Query 005594
Match_columns 689
No_of_seqs 1649 out of 3599
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 01:55:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005594.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005594hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 4E-119 8E-124 873.8 49.8 655 8-681 78-781 (966)
2 COG3914 Spy Predicted O-linked 100.0 1E-66 2.2E-71 509.6 35.3 383 281-681 46-452 (620)
3 PF13844 Glyco_transf_41: Glyc 100.0 1.6E-57 3.5E-62 452.9 11.6 151 488-642 1-153 (468)
4 KOG4626 O-linked N-acetylgluco 100.0 6.7E-47 1.5E-51 369.5 37.6 401 45-461 45-479 (966)
5 TIGR00990 3a0801s09 mitochondr 100.0 9.6E-36 2.1E-40 326.0 54.0 382 48-437 127-577 (615)
6 TIGR02917 PEP_TPR_lipo putativ 100.0 6.2E-34 1.4E-38 331.5 55.9 404 47-461 464-894 (899)
7 PRK11447 cellulose synthase su 100.0 4.8E-33 1E-37 324.0 51.3 393 53-463 274-736 (1157)
8 PRK11447 cellulose synthase su 100.0 1.5E-32 3.2E-37 319.9 54.0 394 60-462 159-695 (1157)
9 TIGR02917 PEP_TPR_lipo putativ 100.0 2.9E-32 6.4E-37 317.5 55.8 387 50-453 433-819 (899)
10 PRK15174 Vi polysaccharide exp 100.0 1.8E-32 3.9E-37 298.6 50.2 364 46-436 40-408 (656)
11 TIGR00990 3a0801s09 mitochondr 100.0 1.5E-31 3.3E-36 292.9 49.4 364 82-462 127-566 (615)
12 PRK15174 Vi polysaccharide exp 100.0 1.6E-31 3.4E-36 291.2 45.9 366 59-438 16-388 (656)
13 KOG0547 Translocase of outer m 100.0 2.5E-30 5.4E-35 247.6 38.4 380 48-436 115-571 (606)
14 PRK10049 pgaA outer membrane p 100.0 2E-29 4.3E-34 280.9 48.3 409 46-466 13-455 (765)
15 PRK10049 pgaA outer membrane p 100.0 1.2E-29 2.6E-34 282.6 44.7 381 44-439 45-464 (765)
16 PRK09782 bacteriophage N4 rece 100.0 6.4E-28 1.4E-32 268.0 52.6 158 42-203 38-228 (987)
17 KOG2002 TPR-containing nuclear 100.0 4E-29 8.6E-34 258.5 39.2 395 46-447 305-761 (1018)
18 KOG2002 TPR-containing nuclear 100.0 1.4E-27 3E-32 247.2 42.5 386 45-441 161-569 (1018)
19 KOG0548 Molecular co-chaperone 100.0 2.1E-27 4.6E-32 231.6 37.9 389 49-446 3-470 (539)
20 PRK09782 bacteriophage N4 rece 100.0 6.6E-26 1.4E-30 252.0 46.2 358 61-436 355-745 (987)
21 KOG1126 DNA-binding cell divis 100.0 7.3E-27 1.6E-31 233.6 27.9 307 117-437 318-626 (638)
22 KOG0547 Translocase of outer m 100.0 1.2E-25 2.7E-30 215.7 34.7 361 83-459 116-558 (606)
23 KOG1173 Anaphase-promoting com 100.0 2.3E-25 5E-30 218.1 37.0 388 46-441 47-528 (611)
24 KOG1155 Anaphase-promoting com 100.0 8.3E-25 1.8E-29 208.8 39.2 363 51-434 167-539 (559)
25 PRK14574 hmsH outer membrane p 100.0 4E-24 8.6E-29 233.1 49.6 389 46-442 32-490 (822)
26 KOG1155 Anaphase-promoting com 100.0 4.2E-24 9E-29 204.0 42.6 374 47-432 77-496 (559)
27 KOG0624 dsRNA-activated protei 100.0 8.3E-25 1.8E-29 200.7 35.1 323 45-367 35-374 (504)
28 KOG2076 RNA polymerase III tra 100.0 2.2E-24 4.8E-29 222.3 41.2 376 46-428 137-552 (895)
29 KOG1126 DNA-binding cell divis 100.0 6.4E-26 1.4E-30 226.9 27.3 295 95-403 332-626 (638)
30 PRK11788 tetratricopeptide rep 99.9 2.6E-24 5.6E-29 224.4 39.3 308 82-429 35-345 (389)
31 KOG2003 TPR repeat-containing 99.9 6.6E-25 1.4E-29 208.3 29.1 405 47-468 200-690 (840)
32 PRK11788 tetratricopeptide rep 99.9 1E-23 2.3E-28 219.8 40.2 303 46-396 33-346 (389)
33 KOG2003 TPR repeat-containing 99.9 1.1E-23 2.5E-28 199.9 31.9 385 50-442 239-700 (840)
34 KOG0624 dsRNA-activated protei 99.9 2.3E-23 4.9E-28 191.3 32.6 319 78-410 34-383 (504)
35 PRK14574 hmsH outer membrane p 99.9 3E-22 6.6E-27 218.5 46.9 374 52-439 72-521 (822)
36 KOG4162 Predicted calmodulin-b 99.9 3.4E-22 7.4E-27 202.9 39.1 391 46-438 321-790 (799)
37 KOG0495 HAT repeat protein [RN 99.9 1.8E-21 3.8E-26 193.2 41.4 373 49-440 517-889 (913)
38 KOG1173 Anaphase-promoting com 99.9 3.1E-22 6.8E-27 196.3 35.4 352 46-411 139-532 (611)
39 KOG0495 HAT repeat protein [RN 99.9 9.7E-21 2.1E-25 188.0 44.5 380 60-456 418-869 (913)
40 KOG2076 RNA polymerase III tra 99.9 3.8E-21 8.2E-26 198.7 41.8 337 82-432 139-513 (895)
41 KOG1174 Anaphase-promoting com 99.9 5.9E-21 1.3E-25 179.8 36.4 385 42-442 91-511 (564)
42 KOG0548 Molecular co-chaperone 99.9 1.5E-21 3.3E-26 190.9 32.8 361 51-427 39-485 (539)
43 TIGR00540 hemY_coli hemY prote 99.9 8.1E-20 1.8E-24 189.4 38.4 301 120-431 88-399 (409)
44 TIGR00540 hemY_coli hemY prote 99.9 1.3E-19 2.7E-24 188.0 38.4 302 48-396 84-398 (409)
45 PLN03218 maturation of RBCL 1; 99.9 7.4E-18 1.6E-22 189.4 54.7 367 47-431 369-748 (1060)
46 KOG1127 TPR repeat-containing 99.9 2.3E-20 4.9E-25 193.7 30.4 229 61-294 471-699 (1238)
47 PF13429 TPR_15: Tetratricopep 99.9 1.4E-22 3.1E-27 199.9 13.9 262 161-431 12-277 (280)
48 KOG1156 N-terminal acetyltrans 99.9 1.7E-18 3.7E-23 172.8 41.8 376 47-436 6-439 (700)
49 KOG1129 TPR repeat-containing 99.9 6.9E-20 1.5E-24 167.5 29.3 382 51-442 7-469 (478)
50 PRK10747 putative protoheme IX 99.9 5.8E-19 1.3E-23 181.9 39.2 303 119-432 87-391 (398)
51 KOG4162 Predicted calmodulin-b 99.9 4.8E-19 1E-23 180.2 36.3 349 47-402 356-788 (799)
52 KOG1174 Anaphase-promoting com 99.9 6.1E-19 1.3E-23 166.4 34.2 311 88-413 204-516 (564)
53 PLN03081 pentatricopeptide (PP 99.9 3.9E-19 8.5E-24 198.1 37.6 398 46-463 121-553 (697)
54 PLN03218 maturation of RBCL 1; 99.9 3.5E-17 7.6E-22 184.1 52.7 360 55-433 413-785 (1060)
55 PF13429 TPR_15: Tetratricopep 99.9 1.1E-21 2.3E-26 193.6 14.4 263 50-362 10-276 (280)
56 KOG0550 Molecular chaperone (D 99.9 1.5E-20 3.3E-25 177.5 21.1 311 32-397 33-350 (486)
57 PLN03081 pentatricopeptide (PP 99.9 4.1E-18 8.8E-23 190.0 42.9 369 47-434 86-493 (697)
58 PLN03077 Protein ECB2; Provisi 99.9 5.3E-18 1.2E-22 193.8 44.7 387 50-459 255-712 (857)
59 PRK12370 invasion protein regu 99.9 3E-19 6.5E-24 192.2 32.5 249 171-429 275-533 (553)
60 PRK10747 putative protoheme IX 99.9 3.5E-18 7.5E-23 176.2 38.4 295 50-397 86-390 (398)
61 PRK12370 invasion protein regu 99.9 3.9E-19 8.5E-24 191.3 32.7 248 98-362 277-534 (553)
62 KOG1125 TPR repeat-containing 99.9 4E-20 8.6E-25 182.6 21.8 260 161-420 289-560 (579)
63 KOG1129 TPR repeat-containing 99.9 5.2E-20 1.1E-24 168.4 20.5 245 160-412 226-473 (478)
64 KOG1125 TPR repeat-containing 99.9 4E-20 8.6E-25 182.6 20.4 267 46-319 283-561 (579)
65 COG3063 PilF Tfp pilus assembl 99.9 6.1E-19 1.3E-23 154.6 25.3 215 42-261 29-243 (250)
66 COG2956 Predicted N-acetylgluc 99.8 3.1E-17 6.6E-22 150.5 33.3 320 163-501 41-371 (389)
67 PRK11189 lipoprotein NlpI; Pro 99.8 5.7E-18 1.2E-22 167.0 29.0 231 129-374 39-277 (296)
68 KOG1127 TPR repeat-containing 99.8 4.2E-18 9.1E-23 177.1 27.9 378 50-443 401-891 (1238)
69 KOG2376 Signal recognition par 99.8 4.4E-16 9.6E-21 154.1 40.7 391 48-449 12-505 (652)
70 PLN03077 Protein ECB2; Provisi 99.8 1.1E-16 2.4E-21 183.0 41.6 360 46-431 321-720 (857)
71 TIGR02521 type_IV_pilW type IV 99.8 1.3E-17 2.9E-22 160.6 28.6 206 45-255 28-233 (234)
72 PRK11189 lipoprotein NlpI; Pro 99.8 1.7E-17 3.7E-22 163.6 29.7 239 62-346 40-283 (296)
73 KOG1156 N-terminal acetyltrans 99.8 1.2E-16 2.5E-21 159.9 34.7 347 83-439 8-408 (700)
74 COG3063 PilF Tfp pilus assembl 99.8 1.4E-17 3.1E-22 146.1 24.6 205 192-437 36-242 (250)
75 KOG0550 Molecular chaperone (D 99.8 1.7E-18 3.6E-23 163.8 20.2 277 157-434 49-353 (486)
76 KOG1915 Cell cycle control pro 99.8 6.6E-15 1.4E-19 141.8 44.6 392 47-441 72-545 (677)
77 COG2956 Predicted N-acetylgluc 99.8 1.2E-16 2.6E-21 146.7 31.2 299 120-429 39-345 (389)
78 KOG1840 Kinesin light chain [C 99.8 3.7E-17 8.1E-22 166.8 29.2 245 187-431 195-479 (508)
79 TIGR02521 type_IV_pilW type IV 99.8 4.9E-17 1.1E-21 156.6 28.3 202 191-433 31-234 (234)
80 KOG1840 Kinesin light chain [C 99.8 1.1E-16 2.3E-21 163.4 30.3 240 158-397 200-479 (508)
81 PLN02789 farnesyltranstransfer 99.8 7.5E-17 1.6E-21 158.0 26.4 210 201-415 47-268 (320)
82 PLN02789 farnesyltranstransfer 99.8 5.6E-16 1.2E-20 151.9 27.9 210 130-346 51-267 (320)
83 KOG3785 Uncharacterized conser 99.8 1.2E-14 2.6E-19 134.9 33.4 385 56-459 30-449 (557)
84 cd05804 StaR_like StaR_like; a 99.7 8.4E-15 1.8E-19 150.6 35.7 210 78-294 2-214 (355)
85 KOG3785 Uncharacterized conser 99.7 1.6E-14 3.4E-19 134.2 32.6 361 49-427 58-453 (557)
86 KOG1915 Cell cycle control pro 99.7 1.6E-13 3.5E-18 132.4 40.3 349 70-431 61-500 (677)
87 cd05804 StaR_like StaR_like; a 99.7 1.5E-14 3.3E-19 148.8 35.1 309 112-432 2-337 (355)
88 PRK15179 Vi polysaccharide bio 99.7 4.1E-14 8.9E-19 152.3 34.9 161 283-443 69-229 (694)
89 TIGR03302 OM_YfiO outer membra 99.7 5.4E-15 1.2E-19 142.0 23.7 191 42-256 27-234 (235)
90 COG3071 HemY Uncharacterized e 99.7 1.3E-12 2.9E-17 124.3 36.7 298 123-431 91-390 (400)
91 PF12569 NARP1: NMDA receptor- 99.7 9.9E-13 2.2E-17 136.5 38.0 248 48-295 4-334 (517)
92 KOG2376 Signal recognition par 99.7 1E-12 2.3E-17 130.6 35.1 207 84-301 14-259 (652)
93 KOG1130 Predicted G-alpha GTPa 99.7 4.6E-15 1E-19 140.3 17.6 293 122-418 23-371 (639)
94 COG3071 HemY Uncharacterized e 99.6 5.2E-12 1.1E-16 120.4 36.2 297 47-361 83-388 (400)
95 PRK14720 transcript cleavage f 99.6 1.7E-13 3.7E-18 148.2 28.3 290 77-440 26-315 (906)
96 PRK15359 type III secretion sy 99.6 8.6E-15 1.9E-19 127.1 15.1 120 321-443 14-133 (144)
97 PRK04841 transcriptional regul 99.6 3.2E-12 6.9E-17 148.5 41.0 385 51-436 344-765 (903)
98 TIGR03302 OM_YfiO outer membra 99.6 7.4E-14 1.6E-18 134.2 22.3 182 77-279 28-223 (235)
99 PRK15359 type III secretion sy 99.6 1.5E-14 3.2E-19 125.7 15.4 127 286-415 13-139 (144)
100 KOG1130 Predicted G-alpha GTPa 99.6 1.2E-14 2.5E-19 137.7 15.6 270 161-431 21-344 (639)
101 KOG4340 Uncharacterized conser 99.6 3.1E-12 6.7E-17 116.4 29.1 364 55-436 17-448 (459)
102 PF12569 NARP1: NMDA receptor- 99.6 5.9E-12 1.3E-16 130.8 34.7 312 81-397 3-334 (517)
103 PRK10370 formate-dependent nit 99.6 1.3E-13 2.7E-18 126.5 18.6 153 274-437 24-179 (198)
104 KOG3060 Uncharacterized conser 99.6 1E-12 2.2E-17 117.3 22.1 173 277-449 63-238 (289)
105 PRK04841 transcriptional regul 99.6 3.2E-11 6.8E-16 140.2 39.9 348 49-400 375-763 (903)
106 PRK10370 formate-dependent nit 99.5 9.9E-13 2.1E-17 120.6 20.4 124 279-402 52-178 (198)
107 KOG2047 mRNA splicing factor [ 99.5 6E-10 1.3E-14 112.1 40.8 379 48-433 102-581 (835)
108 PRK14720 transcript cleavage f 99.5 3.5E-12 7.5E-17 138.2 26.3 269 44-365 27-308 (906)
109 COG5010 TadD Flp pilus assembl 99.5 2.6E-12 5.6E-17 116.1 20.9 177 244-428 52-228 (257)
110 KOG2047 mRNA splicing factor [ 99.5 3.6E-10 7.9E-15 113.7 37.4 360 64-442 84-553 (835)
111 KOG3060 Uncharacterized conser 99.5 5.2E-11 1.1E-15 106.5 27.9 184 187-377 48-234 (289)
112 KOG1128 Uncharacterized conser 99.5 1.6E-12 3.4E-17 132.6 20.3 226 188-435 395-620 (777)
113 COG5010 TadD Flp pilus assembl 99.5 6.1E-12 1.3E-16 113.8 20.8 181 63-251 48-228 (257)
114 TIGR02552 LcrH_SycD type III s 99.5 1.3E-12 2.7E-17 113.5 15.5 119 321-439 4-122 (135)
115 KOG0553 TPR repeat-containing 99.5 9.1E-13 2E-17 121.3 13.6 115 334-448 81-195 (304)
116 KOG1128 Uncharacterized conser 99.5 5.4E-12 1.2E-16 128.8 19.5 217 160-398 401-617 (777)
117 PRK15179 Vi polysaccharide bio 99.4 2E-11 4.3E-16 131.8 23.4 142 75-223 79-220 (694)
118 TIGR02552 LcrH_SycD type III s 99.4 6.1E-12 1.3E-16 109.2 15.7 119 287-405 4-122 (135)
119 PRK15363 pathogenicity island 99.4 6E-12 1.3E-16 106.4 14.5 105 328-432 28-133 (157)
120 KOG0553 TPR repeat-containing 99.4 3.1E-12 6.8E-17 117.8 13.6 108 46-153 79-186 (304)
121 PF04733 Coatomer_E: Coatomer 99.4 1.2E-11 2.6E-16 120.0 15.4 168 191-368 102-270 (290)
122 PF04733 Coatomer_E: Coatomer 99.4 1.1E-11 2.4E-16 120.3 14.4 259 166-438 10-272 (290)
123 PRK15363 pathogenicity island 99.4 4.1E-11 9E-16 101.3 15.6 107 45-151 32-138 (157)
124 KOG4340 Uncharacterized conser 99.3 1.2E-09 2.6E-14 99.9 22.8 279 127-425 21-333 (459)
125 PRK10866 outer membrane biogen 99.3 1.3E-09 2.8E-14 103.3 24.4 184 44-251 28-238 (243)
126 COG4783 Putative Zn-dependent 99.3 2.4E-09 5.2E-14 105.4 24.1 156 78-257 302-457 (484)
127 COG4783 Putative Zn-dependent 99.3 1E-09 2.2E-14 108.0 21.4 158 297-454 303-460 (484)
128 PLN03088 SGT1, suppressor of 99.2 2.1E-10 4.6E-15 115.8 16.6 109 49-157 3-111 (356)
129 PF13525 YfiO: Outer membrane 99.2 1.9E-09 4.2E-14 99.8 21.2 176 46-245 3-198 (203)
130 KOG3617 WD40 and TPR repeat-co 99.2 3.6E-08 7.8E-13 102.1 31.0 324 60-428 740-1171(1416)
131 PLN03088 SGT1, suppressor of 99.2 3.3E-10 7.1E-15 114.5 16.5 111 305-415 7-117 (356)
132 PRK10866 outer membrane biogen 99.2 5.8E-09 1.3E-13 98.9 23.0 175 80-275 30-228 (243)
133 KOG1941 Acetylcholine receptor 99.2 1.5E-08 3.2E-13 95.4 23.6 280 124-432 51-361 (518)
134 COG3898 Uncharacterized membra 99.1 4.2E-07 9E-12 86.8 32.3 296 122-430 90-391 (531)
135 PF13525 YfiO: Outer membrane 99.1 7.9E-09 1.7E-13 95.8 20.6 175 81-276 4-195 (203)
136 PF14938 SNAP: Soluble NSF att 99.1 4.3E-09 9.4E-14 103.2 19.3 134 281-442 89-236 (282)
137 KOG2053 Mitochondrial inherita 99.1 3E-06 6.5E-11 89.6 40.6 201 50-258 11-259 (932)
138 TIGR02795 tol_pal_ybgF tol-pal 99.1 1.8E-09 3.8E-14 91.4 14.2 105 335-439 3-113 (119)
139 COG4235 Cytochrome c biogenesi 99.1 3.1E-09 6.8E-14 99.2 15.9 123 315-437 137-262 (287)
140 TIGR02795 tol_pal_ybgF tol-pal 99.1 2.3E-09 5.1E-14 90.6 14.2 105 48-152 2-112 (119)
141 KOG1941 Acetylcholine receptor 99.1 1.9E-08 4.2E-13 94.6 20.9 306 119-463 9-356 (518)
142 PF14938 SNAP: Soluble NSF att 99.1 3.3E-09 7.1E-14 104.1 16.5 169 89-259 42-230 (282)
143 COG4785 NlpI Lipoprotein NlpI, 99.1 7.6E-09 1.6E-13 90.3 16.5 105 156-260 64-168 (297)
144 PF13414 TPR_11: TPR repeat; P 99.1 6.9E-10 1.5E-14 83.1 8.6 67 367-433 2-69 (69)
145 CHL00033 ycf3 photosystem I as 99.1 5.6E-09 1.2E-13 94.1 15.7 124 59-182 10-138 (168)
146 KOG1070 rRNA processing protei 99.0 1.6E-07 3.4E-12 103.0 27.9 224 207-434 1440-1666(1710)
147 CHL00033 ycf3 photosystem I as 99.0 6.9E-09 1.5E-13 93.4 15.2 104 335-438 36-156 (168)
148 cd00189 TPR Tetratricopeptide 99.0 3.3E-09 7.2E-14 85.6 12.0 99 336-434 2-100 (100)
149 COG4235 Cytochrome c biogenesi 99.0 8.5E-09 1.8E-13 96.3 15.9 121 281-401 137-260 (287)
150 PRK02603 photosystem I assembl 99.0 9E-09 2E-13 93.0 15.1 119 298-436 33-154 (172)
151 PRK10803 tol-pal system protei 99.0 1.8E-08 3.8E-13 96.1 17.7 107 46-152 140-253 (263)
152 COG4785 NlpI Lipoprotein NlpI, 99.0 9.1E-08 2E-12 83.7 19.6 202 81-295 64-266 (297)
153 PF09976 TPR_21: Tetratricopep 99.0 2.8E-08 6.2E-13 86.8 16.9 117 312-429 23-145 (145)
154 PF13414 TPR_11: TPR repeat; P 99.0 2E-09 4.3E-14 80.6 8.2 67 333-399 2-69 (69)
155 KOG1070 rRNA processing protei 99.0 3.8E-07 8.2E-12 100.2 28.3 224 98-330 1440-1664(1710)
156 PRK10153 DNA-binding transcrip 99.0 2.4E-08 5.3E-13 105.0 18.9 144 294-438 331-489 (517)
157 KOG3081 Vesicle coat complex C 99.0 7.4E-07 1.6E-11 81.0 25.3 168 191-368 108-276 (299)
158 KOG4648 Uncharacterized conser 99.0 3.6E-10 7.7E-15 105.2 4.4 107 51-157 100-206 (536)
159 COG0457 NrfG FOG: TPR repeat [ 99.0 1.7E-06 3.7E-11 83.5 30.8 224 204-434 36-268 (291)
160 cd00189 TPR Tetratricopeptide 99.0 8.1E-09 1.8E-13 83.2 11.9 99 50-148 2-100 (100)
161 COG0457 NrfG FOG: TPR repeat [ 99.0 3.7E-06 8.1E-11 81.0 33.0 228 130-400 37-268 (291)
162 KOG2300 Uncharacterized conser 99.0 2.4E-05 5.3E-10 77.1 37.0 384 48-437 7-520 (629)
163 KOG0543 FKBP-type peptidyl-pro 99.0 2.1E-08 4.5E-13 97.0 15.6 73 370-442 259-331 (397)
164 PF13432 TPR_16: Tetratricopep 99.0 2.9E-09 6.3E-14 78.5 7.8 65 52-116 1-65 (65)
165 PF12895 Apc3: Anaphase-promot 99.0 2.2E-09 4.8E-14 83.8 7.4 82 60-142 1-84 (84)
166 PF13432 TPR_16: Tetratricopep 99.0 3E-09 6.5E-14 78.4 7.6 64 373-436 2-65 (65)
167 PRK02603 photosystem I assembl 98.9 3.4E-08 7.4E-13 89.2 16.0 72 81-152 34-108 (172)
168 COG1729 Uncharacterized protei 98.9 6.9E-08 1.5E-12 89.2 17.5 107 47-153 140-252 (262)
169 KOG3617 WD40 and TPR repeat-co 98.9 1.3E-06 2.9E-11 90.8 28.3 313 49-394 758-1171(1416)
170 PF12895 Apc3: Anaphase-promot 98.9 2.8E-09 6.1E-14 83.2 7.2 81 347-428 2-84 (84)
171 PF09976 TPR_21: Tetratricopep 98.9 5.7E-08 1.2E-12 84.9 16.2 129 48-184 11-145 (145)
172 PRK15331 chaperone protein Sic 98.9 2.2E-08 4.7E-13 85.3 12.8 107 43-150 32-138 (165)
173 PRK11906 transcriptional regul 98.9 1E-07 2.2E-12 94.8 19.0 160 50-216 257-432 (458)
174 PRK11906 transcriptional regul 98.9 1.2E-07 2.5E-12 94.4 19.3 148 304-451 259-421 (458)
175 KOG0543 FKBP-type peptidyl-pro 98.9 3.3E-08 7.1E-13 95.7 14.9 132 48-186 208-355 (397)
176 PRK15331 chaperone protein Sic 98.9 2E-08 4.2E-13 85.6 11.9 100 331-430 34-133 (165)
177 COG4105 ComL DNA uptake lipopr 98.9 8.8E-07 1.9E-11 81.1 22.7 191 44-258 30-237 (254)
178 COG3898 Uncharacterized membra 98.9 1.1E-05 2.4E-10 77.3 30.6 294 51-397 87-392 (531)
179 PRK10803 tol-pal system protei 98.9 6.3E-08 1.4E-12 92.4 15.7 106 334-439 142-254 (263)
180 KOG2300 Uncharacterized conser 98.9 9.2E-05 2E-09 73.2 37.1 348 82-432 7-475 (629)
181 KOG3081 Vesicle coat complex C 98.9 2.1E-06 4.5E-11 78.2 23.6 256 166-437 17-277 (299)
182 PRK10153 DNA-binding transcrip 98.9 1.1E-07 2.4E-12 100.0 18.1 144 75-226 330-488 (517)
183 KOG2471 TPR repeat-containing 98.8 7.5E-06 1.6E-10 80.6 28.3 263 170-433 219-650 (696)
184 KOG4648 Uncharacterized conser 98.8 2.7E-09 5.9E-14 99.4 4.4 241 160-441 100-340 (536)
185 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 1.9E-07 4.2E-12 93.7 16.7 121 305-428 174-294 (395)
186 KOG2471 TPR repeat-containing 98.8 3.3E-06 7.2E-11 83.0 24.1 158 46-203 204-381 (696)
187 KOG1914 mRNA cleavage and poly 98.8 0.00025 5.3E-09 71.4 37.1 371 72-450 10-449 (656)
188 KOG4234 TPR repeat-containing 98.8 8.8E-08 1.9E-12 82.7 11.1 105 337-441 98-207 (271)
189 PF07079 DUF1347: Protein of u 98.8 0.00028 6E-09 69.5 40.3 373 51-428 9-521 (549)
190 PF13512 TPR_18: Tetratricopep 98.8 2.5E-07 5.4E-12 77.2 13.3 108 45-152 7-135 (142)
191 KOG1914 mRNA cleavage and poly 98.7 0.00038 8.1E-09 70.1 42.9 419 41-463 13-497 (656)
192 PF12688 TPR_5: Tetratrico pep 98.7 3.2E-07 7E-12 75.5 13.5 94 302-395 3-102 (120)
193 KOG4234 TPR repeat-containing 98.7 1.9E-07 4.1E-12 80.7 12.5 108 48-155 95-207 (271)
194 PF14559 TPR_19: Tetratricopep 98.7 3.6E-08 7.8E-13 73.5 7.2 67 58-124 1-67 (68)
195 KOG2053 Mitochondrial inherita 98.7 5.2E-05 1.1E-09 80.6 32.6 227 93-333 20-259 (932)
196 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 3.3E-07 7.1E-12 92.0 15.5 115 277-394 180-294 (395)
197 COG4105 ComL DNA uptake lipopr 98.7 8.5E-06 1.8E-10 74.8 22.9 173 81-274 33-219 (254)
198 PF12688 TPR_5: Tetratrico pep 98.7 6.2E-07 1.3E-11 73.8 13.4 96 335-430 2-103 (120)
199 COG1729 Uncharacterized protei 98.7 6.4E-07 1.4E-11 82.9 14.1 105 337-441 144-254 (262)
200 PF14559 TPR_19: Tetratricopep 98.6 1.1E-07 2.3E-12 70.9 7.0 56 348-403 5-60 (68)
201 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 1.8E-07 4E-12 92.9 10.2 68 330-397 71-141 (453)
202 COG4700 Uncharacterized protei 98.6 9.7E-06 2.1E-10 69.6 18.5 148 281-430 71-221 (251)
203 PF13371 TPR_9: Tetratricopept 98.6 3.1E-07 6.8E-12 69.5 8.6 69 55-123 2-70 (73)
204 PF13371 TPR_9: Tetratricopept 98.6 4.2E-07 9.1E-12 68.8 8.7 63 376-438 3-65 (73)
205 KOG4507 Uncharacterized conser 98.6 1.2E-05 2.6E-10 81.0 20.5 105 342-446 615-720 (886)
206 PF13512 TPR_18: Tetratricopep 98.5 3.7E-06 8.1E-11 70.2 14.2 103 336-438 12-135 (142)
207 KOG2796 Uncharacterized conser 98.5 0.00013 2.8E-09 66.5 24.4 227 190-436 68-320 (366)
208 KOG4555 TPR repeat-containing 98.5 7.6E-06 1.6E-10 65.7 14.7 100 49-148 44-147 (175)
209 KOG1586 Protein required for f 98.5 2.1E-05 4.6E-10 70.1 18.8 107 338-444 117-237 (288)
210 KOG2796 Uncharacterized conser 98.5 0.00019 4.1E-09 65.4 25.0 198 194-411 125-332 (366)
211 KOG4555 TPR repeat-containing 98.5 4.6E-06 1E-10 66.9 12.4 98 338-435 47-148 (175)
212 PLN03098 LPA1 LOW PSII ACCUMUL 98.4 2.9E-06 6.2E-11 84.6 13.0 80 32-111 59-141 (453)
213 COG4700 Uncharacterized protei 98.4 9.3E-05 2E-09 63.7 20.1 150 95-253 69-221 (251)
214 KOG1586 Protein required for f 98.4 8.3E-05 1.8E-09 66.5 20.3 141 160-301 77-230 (288)
215 KOG3616 Selective LIM binding 98.4 0.00082 1.8E-08 69.9 29.8 210 194-429 664-909 (1636)
216 PF13424 TPR_12: Tetratricopep 98.4 5.2E-07 1.1E-11 69.3 4.9 64 368-431 5-75 (78)
217 PF06552 TOM20_plant: Plant sp 98.4 3.6E-06 7.7E-11 72.5 10.2 102 316-444 7-122 (186)
218 KOG1258 mRNA processing protei 98.3 0.0051 1.1E-07 63.5 33.1 344 64-423 61-421 (577)
219 PF13424 TPR_12: Tetratricopep 98.3 1.3E-06 2.8E-11 67.0 5.7 74 113-186 2-75 (78)
220 KOG1585 Protein required for f 98.3 0.00015 3.2E-09 65.4 18.8 197 231-460 37-249 (308)
221 KOG3616 Selective LIM binding 98.3 0.0011 2.4E-08 68.9 27.5 216 85-326 664-908 (1636)
222 KOG4642 Chaperone-dependent E3 98.3 2.6E-06 5.7E-11 76.1 7.7 100 46-145 8-107 (284)
223 KOG1585 Protein required for f 98.3 0.00028 6E-09 63.7 19.9 169 158-362 32-218 (308)
224 PF10300 DUF3808: Protein of u 98.2 0.0018 3.9E-08 68.1 29.3 120 314-433 247-378 (468)
225 KOG1258 mRNA processing protei 98.2 0.01 2.2E-07 61.4 40.4 386 51-453 82-492 (577)
226 PF10300 DUF3808: Protein of u 98.2 0.0023 5E-08 67.4 29.5 150 304-454 192-356 (468)
227 KOG4507 Uncharacterized conser 98.2 0.00017 3.6E-09 73.0 19.3 108 306-413 613-721 (886)
228 PF06552 TOM20_plant: Plant sp 98.2 2.2E-05 4.8E-10 67.7 10.7 113 242-377 8-123 (186)
229 PF04184 ST7: ST7 protein; In 98.1 0.00079 1.7E-08 67.6 21.9 189 54-260 174-381 (539)
230 PF08631 SPO22: Meiosis protei 98.1 0.0073 1.6E-07 59.1 28.8 131 126-256 3-152 (278)
231 PF10345 Cohesin_load: Cohesin 98.1 0.031 6.7E-07 61.6 37.1 365 65-432 38-524 (608)
232 PF10345 Cohesin_load: Cohesin 98.1 0.031 6.8E-07 61.5 41.6 409 46-459 57-598 (608)
233 PF02259 FAT: FAT domain; Int 98.1 0.0051 1.1E-07 63.1 28.2 295 55-366 5-341 (352)
234 KOG2610 Uncharacterized conser 98.1 0.00034 7.3E-09 66.1 17.0 158 279-436 116-283 (491)
235 PF05843 Suf: Suppressor of fo 98.1 0.00011 2.3E-09 71.9 14.8 135 302-436 3-141 (280)
236 KOG0545 Aryl-hydrocarbon recep 98.0 9.3E-05 2E-09 66.6 12.5 74 368-441 230-303 (329)
237 PF02259 FAT: FAT domain; Int 98.0 0.0066 1.4E-07 62.2 28.4 260 165-434 6-341 (352)
238 KOG4642 Chaperone-dependent E3 98.0 1.4E-05 3E-10 71.6 6.9 90 307-396 17-106 (284)
239 KOG1550 Extracellular protein 98.0 0.0064 1.4E-07 65.7 28.7 82 349-435 454-542 (552)
240 KOG0545 Aryl-hydrocarbon recep 98.0 0.0001 2.3E-09 66.3 12.1 108 45-152 175-300 (329)
241 PF04184 ST7: ST7 protein; In 98.0 0.0007 1.5E-08 68.0 19.1 105 336-440 261-384 (539)
242 KOG0985 Vesicle coat protein c 98.0 0.025 5.3E-07 61.7 31.1 234 61-320 1088-1374(1666)
243 KOG2610 Uncharacterized conser 98.0 0.0054 1.2E-07 58.2 23.2 166 83-252 104-274 (491)
244 PF13428 TPR_14: Tetratricopep 98.0 2.1E-05 4.6E-10 52.1 5.4 39 371-409 4-42 (44)
245 PF13281 DUF4071: Domain of un 98.0 0.0086 1.9E-07 59.6 25.7 125 190-315 140-274 (374)
246 KOG1550 Extracellular protein 98.0 0.0091 2E-07 64.5 28.4 177 63-254 227-426 (552)
247 PF13428 TPR_14: Tetratricopep 97.9 3E-05 6.6E-10 51.3 5.2 42 335-376 2-43 (44)
248 KOG0985 Vesicle coat protein c 97.9 0.064 1.4E-06 58.7 33.1 63 189-256 1102-1164(1666)
249 KOG0376 Serine-threonine phosp 97.9 2.4E-05 5.3E-10 77.8 6.5 109 48-156 4-112 (476)
250 PF05843 Suf: Suppressor of fo 97.8 0.00059 1.3E-08 66.7 15.4 129 274-402 9-141 (280)
251 PF13431 TPR_17: Tetratricopep 97.8 2.1E-05 4.6E-10 48.4 3.3 32 391-422 2-33 (34)
252 KOG0551 Hsp90 co-chaperone CNS 97.8 0.0002 4.3E-09 67.7 11.1 103 47-149 80-186 (390)
253 KOG0376 Serine-threonine phosp 97.8 2.8E-05 6.1E-10 77.4 5.4 131 303-438 7-137 (476)
254 COG2909 MalT ATP-dependent tra 97.8 0.024 5.1E-07 61.4 27.1 246 46-292 413-685 (894)
255 PF00515 TPR_1: Tetratricopept 97.8 4.9E-05 1.1E-09 47.1 4.5 33 403-435 2-34 (34)
256 PF08631 SPO22: Meiosis protei 97.8 0.049 1.1E-06 53.4 27.5 129 94-222 5-152 (278)
257 KOG0530 Protein farnesyltransf 97.8 0.016 3.4E-07 53.3 21.7 184 47-237 41-233 (318)
258 PF13431 TPR_17: Tetratricopep 97.8 2.8E-05 6E-10 47.8 3.1 32 357-388 2-33 (34)
259 KOG0890 Protein kinase of the 97.8 0.05 1.1E-06 65.1 31.2 107 333-441 1669-1794(2382)
260 COG3118 Thioredoxin domain-con 97.7 0.0019 4.2E-08 60.6 16.3 71 180-250 225-297 (304)
261 KOG0890 Protein kinase of the 97.7 0.029 6.2E-07 67.0 29.0 133 241-375 1645-1796(2382)
262 PF07719 TPR_2: Tetratricopept 97.7 8.2E-05 1.8E-09 46.1 5.0 33 403-435 2-34 (34)
263 PF13281 DUF4071: Domain of un 97.7 0.016 3.4E-07 57.8 22.6 178 81-259 140-339 (374)
264 PRK13184 pknD serine/threonine 97.7 0.11 2.3E-06 58.8 31.3 335 52-395 479-867 (932)
265 KOG0530 Protein farnesyltransf 97.7 0.018 3.9E-07 53.0 20.4 191 97-312 41-233 (318)
266 COG3118 Thioredoxin domain-con 97.7 0.0098 2.1E-07 56.1 19.3 56 51-106 137-192 (304)
267 COG2909 MalT ATP-dependent tra 97.6 0.17 3.7E-06 55.1 35.9 304 82-394 347-685 (894)
268 KOG1308 Hsp70-interacting prot 97.5 0.00012 2.6E-09 69.6 5.4 98 51-148 117-214 (377)
269 PF00515 TPR_1: Tetratricopept 97.5 0.00028 6E-09 43.7 4.8 32 369-400 2-33 (34)
270 KOG0551 Hsp90 co-chaperone CNS 97.5 0.00065 1.4E-08 64.3 9.1 102 336-437 83-188 (390)
271 COG2976 Uncharacterized protei 97.5 0.0096 2.1E-07 52.4 15.4 117 318-435 70-192 (207)
272 COG5107 RNA14 Pre-mRNA 3'-end 97.5 0.15 3.2E-06 50.9 34.0 142 43-186 37-190 (660)
273 PF03704 BTAD: Bacterial trans 97.4 0.0043 9.2E-08 54.2 13.6 95 50-144 8-124 (146)
274 PF07719 TPR_2: Tetratricopept 97.4 0.00041 8.9E-09 42.9 5.1 31 370-400 3-33 (34)
275 PF03704 BTAD: Bacterial trans 97.4 0.0066 1.4E-07 53.0 14.1 62 369-430 63-124 (146)
276 COG5107 RNA14 Pre-mRNA 3'-end 97.4 0.19 4.1E-06 50.2 32.7 143 70-221 30-191 (660)
277 KOG2396 HAT (Half-A-TPR) repea 97.4 0.22 4.7E-06 50.6 37.2 75 47-121 104-179 (568)
278 PF07079 DUF1347: Protein of u 97.3 0.22 4.7E-06 50.0 36.6 338 51-394 48-521 (549)
279 KOG1308 Hsp70-interacting prot 97.3 0.00026 5.6E-09 67.3 4.4 85 313-397 127-211 (377)
280 PF13181 TPR_8: Tetratricopept 97.3 0.00047 1E-08 42.6 4.1 32 403-434 2-33 (34)
281 COG0790 FOG: TPR repeat, SEL1 97.3 0.11 2.4E-06 51.5 23.3 129 281-416 92-236 (292)
282 KOG0128 RNA-binding protein SA 97.3 0.4 8.7E-06 51.8 35.8 369 62-431 93-526 (881)
283 COG2976 Uncharacterized protei 97.2 0.096 2.1E-06 46.3 18.8 120 134-258 70-192 (207)
284 PF08424 NRDE-2: NRDE-2, neces 97.2 0.048 1E-06 54.5 19.6 135 173-330 47-184 (321)
285 COG0790 FOG: TPR repeat, SEL1 97.2 0.29 6.2E-06 48.5 25.1 187 56-257 49-269 (292)
286 PF08424 NRDE-2: NRDE-2, neces 97.1 0.035 7.6E-07 55.5 17.8 114 69-186 6-131 (321)
287 KOG2041 WD40 repeat protein [G 97.1 0.53 1.1E-05 49.7 26.6 80 57-142 672-760 (1189)
288 PRK11619 lytic murein transgly 97.0 0.85 1.8E-05 50.2 33.4 357 48-431 33-436 (644)
289 KOG3824 Huntingtin interacting 97.0 0.0025 5.4E-08 59.6 7.3 78 47-124 115-192 (472)
290 PF04910 Tcf25: Transcriptiona 96.9 0.049 1.1E-06 55.1 16.7 143 292-434 32-225 (360)
291 PF04781 DUF627: Protein of un 96.9 0.0093 2E-07 47.4 8.7 92 54-145 2-107 (111)
292 PF13176 TPR_7: Tetratricopept 96.8 0.0011 2.5E-08 41.4 2.7 27 405-431 2-28 (36)
293 KOG1464 COP9 signalosome, subu 96.8 0.099 2.1E-06 48.4 15.5 196 60-258 39-264 (440)
294 KOG3824 Huntingtin interacting 96.8 0.0052 1.1E-07 57.5 7.6 64 379-442 127-190 (472)
295 PF13181 TPR_8: Tetratricopept 96.7 0.0031 6.8E-08 38.8 4.3 30 370-399 3-32 (34)
296 PF13174 TPR_6: Tetratricopept 96.7 0.003 6.5E-08 38.5 4.0 31 404-434 2-32 (33)
297 PF04910 Tcf25: Transcriptiona 96.7 0.095 2.1E-06 53.0 16.9 74 75-148 33-135 (360)
298 PRK15180 Vi polysaccharide bio 96.7 0.0082 1.8E-07 59.8 8.8 143 311-453 300-442 (831)
299 KOG1463 26S proteasome regulat 96.7 0.67 1.5E-05 44.7 22.5 205 51-256 7-240 (411)
300 PF09613 HrpB1_HrpK: Bacterial 96.6 0.15 3.2E-06 44.0 14.9 99 48-147 10-108 (160)
301 PRK15180 Vi polysaccharide bio 96.6 0.97 2.1E-05 45.7 30.4 134 48-188 289-422 (831)
302 KOG3783 Uncharacterized conser 96.6 0.49 1.1E-05 48.8 20.7 91 99-194 250-340 (546)
303 COG5159 RPN6 26S proteasome re 96.5 0.72 1.6E-05 43.3 22.6 204 52-256 7-237 (421)
304 PF13174 TPR_6: Tetratricopept 96.5 0.0055 1.2E-07 37.3 4.1 30 85-114 3-32 (33)
305 KOG1464 COP9 signalosome, subu 96.4 0.24 5.1E-06 46.0 15.7 195 95-296 40-261 (440)
306 KOG1538 Uncharacterized conser 96.3 0.72 1.6E-05 48.3 20.2 27 48-74 585-611 (1081)
307 PF14561 TPR_20: Tetratricopep 96.3 0.053 1.1E-06 42.2 9.6 67 67-133 7-75 (90)
308 KOG2041 WD40 repeat protein [G 96.3 1.9 4.2E-05 45.8 23.2 137 88-249 740-876 (1189)
309 PF14853 Fis1_TPR_C: Fis1 C-te 96.3 0.013 2.8E-07 40.1 5.2 36 404-439 3-38 (53)
310 KOG2396 HAT (Half-A-TPR) repea 96.2 1.7 3.7E-05 44.4 33.3 261 163-435 288-564 (568)
311 COG3914 Spy Predicted O-linked 96.2 0.21 4.6E-06 51.8 15.7 133 313-445 44-185 (620)
312 PF13176 TPR_7: Tetratricopept 96.2 0.011 2.5E-07 36.8 4.4 28 370-397 1-28 (36)
313 KOG1463 26S proteasome regulat 96.1 1.4 3E-05 42.7 23.5 208 86-295 8-238 (411)
314 PF09613 HrpB1_HrpK: Bacterial 96.1 0.11 2.4E-06 44.7 11.4 97 336-433 12-108 (160)
315 PF14561 TPR_20: Tetratricopep 96.1 0.044 9.5E-07 42.7 8.3 49 387-435 7-55 (90)
316 PF12968 DUF3856: Domain of Un 96.1 0.28 6E-06 39.4 12.4 87 345-431 20-129 (144)
317 PF14853 Fis1_TPR_C: Fis1 C-te 96.1 0.029 6.4E-07 38.3 6.2 36 84-119 3-38 (53)
318 KOG3783 Uncharacterized conser 96.1 2.2 4.7E-05 44.3 26.8 66 370-435 451-524 (546)
319 COG5159 RPN6 26S proteasome re 96.1 1.3 2.9E-05 41.7 20.7 206 86-296 7-236 (421)
320 PRK10941 hypothetical protein; 96.0 0.095 2.1E-06 50.3 11.6 68 338-405 185-252 (269)
321 TIGR02561 HrpB1_HrpK type III 95.9 0.45 9.7E-06 40.3 13.6 86 48-133 10-95 (153)
322 PRK10941 hypothetical protein; 95.9 0.14 3E-06 49.2 12.2 69 194-262 184-252 (269)
323 PF12968 DUF3856: Domain of Un 95.8 0.32 7E-06 39.0 11.6 95 51-145 12-129 (144)
324 COG4976 Predicted methyltransf 95.8 0.019 4.1E-07 51.7 5.5 65 376-440 3-67 (287)
325 PRK11619 lytic murein transgly 95.7 4.2 9.1E-05 44.9 34.9 318 83-430 34-374 (644)
326 PF04781 DUF627: Protein of un 95.7 0.13 2.9E-06 41.0 9.5 103 306-431 2-107 (111)
327 KOG1538 Uncharacterized conser 95.7 2 4.2E-05 45.3 19.9 49 56-109 564-612 (1081)
328 PF09986 DUF2225: Uncharacteri 95.7 0.14 3E-06 47.6 10.9 92 129-220 90-194 (214)
329 COG4649 Uncharacterized protei 95.6 1.3 2.9E-05 38.4 15.8 132 310-442 68-206 (221)
330 smart00028 TPR Tetratricopepti 95.6 0.019 4.1E-07 34.4 3.7 31 404-434 3-33 (34)
331 COG4649 Uncharacterized protei 95.5 1.5 3.3E-05 38.1 16.5 29 191-219 167-195 (221)
332 KOG3364 Membrane protein invol 95.3 0.19 4.1E-06 41.5 9.0 74 367-440 31-109 (149)
333 KOG1839 Uncharacterized protei 95.1 0.18 4E-06 57.3 11.5 162 270-431 936-1128(1236)
334 PF09986 DUF2225: Uncharacteri 95.1 0.23 4.9E-06 46.1 10.4 29 335-363 166-194 (214)
335 TIGR02561 HrpB1_HrpK type III 94.9 0.44 9.5E-06 40.4 10.4 77 342-418 18-94 (153)
336 KOG1310 WD40 repeat protein [G 94.8 0.15 3.3E-06 51.8 8.9 103 47-149 373-478 (758)
337 COG4976 Predicted methyltransf 94.8 0.053 1.1E-06 49.0 5.0 61 91-151 4-64 (287)
338 KOG1310 WD40 repeat protein [G 94.7 0.099 2.1E-06 53.1 7.3 88 348-435 388-478 (758)
339 PF10602 RPN7: 26S proteasome 94.7 0.6 1.3E-05 42.0 11.7 102 83-185 37-141 (177)
340 smart00028 TPR Tetratricopepti 94.7 0.062 1.3E-06 31.9 4.0 29 85-113 4-32 (34)
341 COG1747 Uncharacterized N-term 94.7 6.2 0.00013 40.7 22.3 81 171-254 80-160 (711)
342 KOG4814 Uncharacterized conser 94.6 2.4 5.3E-05 44.6 16.9 99 156-254 353-457 (872)
343 KOG1839 Uncharacterized protei 94.5 0.43 9.4E-06 54.5 12.4 137 46-186 930-1086(1236)
344 KOG3364 Membrane protein invol 94.4 1 2.3E-05 37.3 11.1 73 334-406 32-109 (149)
345 KOG0529 Protein geranylgeranyl 94.4 3.4 7.3E-05 41.4 16.7 173 55-230 35-234 (421)
346 PF10602 RPN7: 26S proteasome 94.3 0.67 1.5E-05 41.6 11.1 65 191-255 36-103 (177)
347 KOG2422 Uncharacterized conser 94.0 6.1 0.00013 41.4 18.1 104 60-163 250-390 (665)
348 PF13374 TPR_10: Tetratricopep 93.7 0.15 3.2E-06 32.8 4.5 29 403-431 3-31 (42)
349 PRK13184 pknD serine/threonine 93.6 17 0.00037 41.8 28.1 135 123-258 482-624 (932)
350 PF04190 DUF410: Protein of un 93.6 7.4 0.00016 37.5 18.2 34 221-254 136-170 (260)
351 KOG2422 Uncharacterized conser 93.4 4.6 0.0001 42.2 16.0 156 170-332 251-451 (665)
352 PF10579 Rapsyn_N: Rapsyn N-te 93.4 0.76 1.6E-05 34.1 7.8 62 48-109 6-70 (80)
353 KOG0529 Protein geranylgeranyl 93.3 8.1 0.00017 38.9 17.1 162 281-442 44-235 (421)
354 PF13374 TPR_10: Tetratricopep 93.0 0.25 5.4E-06 31.8 4.7 29 369-397 3-31 (42)
355 KOG3807 Predicted membrane pro 92.7 10 0.00023 36.7 19.6 145 86-249 188-335 (556)
356 COG5191 Uncharacterized conser 92.7 0.32 7E-06 46.1 6.3 79 44-122 103-182 (435)
357 KOG3807 Predicted membrane pro 92.6 11 0.00023 36.6 18.1 59 51-111 187-245 (556)
358 COG5191 Uncharacterized conser 92.4 0.25 5.5E-06 46.8 5.3 86 323-408 96-182 (435)
359 COG3629 DnrI DNA-binding trans 91.9 4.2 9.1E-05 39.2 12.9 64 82-145 153-216 (280)
360 KOG0128 RNA-binding protein SA 91.8 24 0.00051 39.0 35.6 380 47-428 112-560 (881)
361 PF04053 Coatomer_WDAD: Coatom 91.8 9.2 0.0002 40.0 16.6 164 50-251 263-428 (443)
362 KOG2063 Vacuolar assembly/sort 91.5 28 0.00061 39.5 20.4 113 159-271 506-638 (877)
363 PF11207 DUF2989: Protein of u 91.4 5.4 0.00012 36.1 12.3 73 172-245 121-198 (203)
364 PF04190 DUF410: Protein of un 91.4 14 0.00031 35.6 18.5 65 298-362 88-169 (260)
365 PF09670 Cas_Cas02710: CRISPR- 91.2 6.5 0.00014 40.4 14.5 64 48-111 131-198 (379)
366 COG2912 Uncharacterized conser 91.2 2.1 4.6E-05 40.6 10.0 68 195-262 185-252 (269)
367 PF07720 TPR_3: Tetratricopept 91.0 0.84 1.8E-05 28.3 4.9 31 404-434 3-35 (36)
368 PF00244 14-3-3: 14-3-3 protei 90.8 15 0.00032 34.8 16.7 63 49-111 2-66 (236)
369 PF12862 Apc5: Anaphase-promot 90.8 2.6 5.6E-05 33.2 8.9 61 126-186 8-70 (94)
370 PF15015 NYD-SP12_N: Spermatog 90.7 2.7 5.9E-05 42.0 10.5 91 52-142 180-288 (569)
371 COG2912 Uncharacterized conser 90.5 1.2 2.5E-05 42.3 7.6 68 371-438 184-251 (269)
372 PF15015 NYD-SP12_N: Spermatog 90.0 3.6 7.7E-05 41.2 10.6 96 122-217 182-288 (569)
373 PF04053 Coatomer_WDAD: Coatom 90.0 19 0.00042 37.7 16.9 99 279-394 274-373 (443)
374 COG3629 DnrI DNA-binding trans 89.8 1.7 3.8E-05 41.7 8.3 64 368-431 153-216 (280)
375 KOG2114 Vacuolar assembly/sort 89.8 15 0.00033 40.4 15.8 114 124-249 342-455 (933)
376 COG1747 Uncharacterized N-term 89.8 28 0.0006 36.2 25.6 203 113-332 63-291 (711)
377 PF07721 TPR_4: Tetratricopept 89.3 0.52 1.1E-05 26.7 2.8 22 404-425 3-24 (26)
378 PF04097 Nic96: Nup93/Nic96; 89.2 40 0.00087 37.3 22.0 28 46-73 109-136 (613)
379 PF07721 TPR_4: Tetratricopept 88.9 0.63 1.4E-05 26.3 3.0 23 370-392 3-25 (26)
380 PF11207 DUF2989: Protein of u 88.9 5.8 0.00013 35.9 10.3 71 351-422 123-198 (203)
381 PF10579 Rapsyn_N: Rapsyn N-te 88.8 3.7 8E-05 30.6 7.5 61 84-144 8-71 (80)
382 PF10516 SHNi-TPR: SHNi-TPR; 88.4 0.81 1.8E-05 28.7 3.4 29 403-431 2-30 (38)
383 PF07720 TPR_3: Tetratricopept 88.3 1.7 3.6E-05 27.0 4.7 17 88-104 7-23 (36)
384 KOG2581 26S proteasome regulat 88.1 32 0.00068 34.7 19.2 141 47-190 123-280 (493)
385 PF12862 Apc5: Anaphase-promot 88.0 2.3 5E-05 33.5 6.7 23 235-257 8-30 (94)
386 COG4941 Predicted RNA polymera 87.9 29 0.00062 34.0 16.2 158 280-438 210-401 (415)
387 PF14863 Alkyl_sulf_dimr: Alky 87.4 2 4.3E-05 36.6 6.3 51 47-97 69-119 (141)
388 PF10516 SHNi-TPR: SHNi-TPR; 87.2 1.1 2.4E-05 28.1 3.5 26 337-362 4-29 (38)
389 KOG2063 Vacuolar assembly/sort 87.1 36 0.00078 38.7 17.2 26 85-110 507-532 (877)
390 PF04097 Nic96: Nup93/Nic96; 86.8 24 0.00052 39.0 16.0 22 378-400 515-536 (613)
391 PF12739 TRAPPC-Trs85: ER-Golg 85.8 49 0.0011 34.6 17.4 164 49-221 209-400 (414)
392 KOG1920 IkappaB kinase complex 85.7 78 0.0017 36.9 18.8 24 304-327 1003-1026(1265)
393 PF12739 TRAPPC-Trs85: ER-Golg 85.5 46 0.001 34.7 16.6 54 118-172 210-263 (414)
394 PF11817 Foie-gras_1: Foie gra 85.4 35 0.00076 32.6 15.0 27 160-186 13-39 (247)
395 PF00244 14-3-3: 14-3-3 protei 85.4 25 0.00055 33.3 13.3 28 195-222 5-32 (236)
396 KOG1920 IkappaB kinase complex 84.9 84 0.0018 36.6 22.4 109 302-428 941-1052(1265)
397 smart00299 CLH Clathrin heavy 84.7 24 0.00052 30.1 12.7 47 202-249 18-64 (140)
398 PF04348 LppC: LppC putative l 84.6 1.9 4E-05 46.5 6.0 258 301-567 25-300 (536)
399 COG3947 Response regulator con 84.4 4.4 9.4E-05 38.6 7.4 59 371-429 282-340 (361)
400 KOG4014 Uncharacterized conser 84.1 30 0.00065 30.7 15.9 141 279-436 48-202 (248)
401 KOG4814 Uncharacterized conser 83.8 67 0.0015 34.6 33.0 97 50-146 356-458 (872)
402 TIGR03504 FimV_Cterm FimV C-te 83.7 3.1 6.6E-05 27.2 4.4 25 406-430 3-27 (44)
403 KOG2581 26S proteasome regulat 83.6 53 0.0011 33.2 23.5 199 58-258 40-280 (493)
404 PF10373 EST1_DNA_bind: Est1 D 83.6 4.6 9.9E-05 39.6 8.0 62 319-380 1-62 (278)
405 PF10373 EST1_DNA_bind: Est1 D 83.3 3.7 8.1E-05 40.2 7.3 62 353-414 1-62 (278)
406 COG5536 BET4 Protein prenyltra 83.3 32 0.0007 32.8 12.4 181 49-230 32-232 (328)
407 COG3947 Response regulator con 83.1 5.3 0.00012 38.0 7.4 61 84-144 281-341 (361)
408 KOG0276 Vesicle coat complex C 82.3 19 0.00041 38.2 11.5 132 309-469 646-777 (794)
409 COG4455 ImpE Protein of avirul 82.0 42 0.00091 30.9 13.5 62 55-116 8-69 (273)
410 KOG4014 Uncharacterized conser 81.4 38 0.00083 30.1 13.7 64 189-253 32-101 (248)
411 KOG0546 HSP90 co-chaperone CPR 80.9 2.6 5.6E-05 41.3 4.7 70 370-439 277-346 (372)
412 KOG0276 Vesicle coat complex C 80.3 34 0.00073 36.4 12.5 100 57-185 595-694 (794)
413 COG4455 ImpE Protein of avirul 79.8 16 0.00035 33.4 8.9 59 343-401 10-68 (273)
414 TIGR03504 FimV_Cterm FimV C-te 79.1 4.6 0.0001 26.4 4.0 25 52-76 3-27 (44)
415 PF09670 Cas_Cas02710: CRISPR- 78.8 72 0.0016 32.8 14.8 63 158-220 132-198 (379)
416 COG4941 Predicted RNA polymera 78.7 71 0.0015 31.5 17.2 162 98-262 212-402 (415)
417 KOG0889 Histone acetyltransfer 78.6 2.4E+02 0.0052 37.5 25.8 131 302-432 2738-2884(3550)
418 PF11817 Foie-gras_1: Foie gra 77.3 21 0.00045 34.2 9.9 62 191-252 178-245 (247)
419 smart00386 HAT HAT (Half-A-TPR 77.0 7 0.00015 22.9 4.4 27 63-89 2-28 (33)
420 smart00386 HAT HAT (Half-A-TPR 76.9 6.9 0.00015 22.9 4.4 22 385-406 4-25 (33)
421 KOG0546 HSP90 co-chaperone CPR 76.4 5.9 0.00013 38.9 5.6 84 334-417 275-358 (372)
422 PF10255 Paf67: RNA polymerase 76.2 34 0.00074 35.1 11.3 61 50-110 124-192 (404)
423 PF12854 PPR_1: PPR repeat 75.9 7.8 0.00017 23.5 4.3 25 334-358 7-31 (34)
424 smart00299 CLH Clathrin heavy 74.1 54 0.0012 27.9 15.5 50 56-106 15-64 (140)
425 PF12854 PPR_1: PPR repeat 73.1 9.9 0.00021 23.1 4.2 27 115-141 6-32 (34)
426 TIGR02710 CRISPR-associated pr 72.5 1.2E+02 0.0025 31.0 13.9 58 50-107 132-196 (380)
427 PF09205 DUF1955: Domain of un 70.8 31 0.00066 28.9 7.6 52 345-396 97-148 (161)
428 PF13041 PPR_2: PPR repeat fam 70.4 24 0.00053 23.5 6.2 27 193-219 5-31 (50)
429 PF11846 DUF3366: Domain of un 70.2 18 0.00039 33.1 7.3 49 385-434 128-176 (193)
430 PF13041 PPR_2: PPR repeat fam 69.6 26 0.00056 23.4 6.2 25 337-361 6-30 (50)
431 PF07163 Pex26: Pex26 protein; 69.2 1.1E+02 0.0024 29.4 14.2 131 49-180 36-181 (309)
432 COG5536 BET4 Protein prenyltra 68.9 22 0.00047 33.9 7.2 134 64-198 90-234 (328)
433 cd03811 GT1_WabH_like This fam 68.5 21 0.00046 35.7 8.3 189 489-681 1-213 (353)
434 smart00101 14_3_3 14-3-3 homol 67.5 1.2E+02 0.0025 29.0 17.9 59 50-108 3-65 (244)
435 cd02682 MIT_AAA_Arch MIT: doma 65.7 30 0.00065 25.8 6.1 29 48-76 6-34 (75)
436 PF10255 Paf67: RNA polymerase 64.8 1.8E+02 0.0038 30.1 16.4 60 160-219 125-192 (404)
437 PF14863 Alkyl_sulf_dimr: Alky 64.8 25 0.00055 30.1 6.4 47 371-417 73-119 (141)
438 KOG2114 Vacuolar assembly/sort 64.1 2.5E+02 0.0055 31.6 27.8 64 47-111 333-397 (933)
439 KOG4279 Serine/threonine prote 63.5 77 0.0017 34.8 10.8 119 115-239 200-334 (1226)
440 KOG0889 Histone acetyltransfer 63.4 5E+02 0.011 34.9 22.4 111 334-444 2736-2854(3550)
441 PF07219 HemY_N: HemY protein 63.3 32 0.0007 27.8 6.6 28 50-77 61-88 (108)
442 PF01535 PPR: PPR repeat; Int 62.0 14 0.0003 21.3 3.3 14 378-391 10-23 (31)
443 PF01535 PPR: PPR repeat; Int 62.0 14 0.0003 21.3 3.3 28 404-431 2-29 (31)
444 KOG0687 26S proteasome regulat 60.7 1.8E+02 0.0039 28.8 12.4 29 116-144 104-132 (393)
445 smart00101 14_3_3 14-3-3 homol 60.4 1.6E+02 0.0034 28.1 18.8 56 195-250 5-64 (244)
446 cd02680 MIT_calpain7_2 MIT: do 60.4 15 0.00032 27.3 3.7 15 348-362 20-34 (75)
447 cd03820 GT1_amsD_like This fam 57.3 40 0.00087 33.6 7.9 141 489-636 1-164 (348)
448 COG5187 RPN7 26S proteasome re 57.2 1.9E+02 0.0041 28.0 12.4 103 225-328 115-220 (412)
449 PF13226 DUF4034: Domain of un 56.7 1.3E+02 0.0028 29.2 10.4 102 54-155 6-138 (277)
450 KOG0687 26S proteasome regulat 56.4 2.1E+02 0.0046 28.3 12.7 30 225-254 104-133 (393)
451 PHA02537 M terminase endonucle 56.0 13 0.00029 34.6 3.6 34 402-435 169-211 (230)
452 PF10952 DUF2753: Protein of u 56.0 52 0.0011 27.1 6.3 26 338-363 5-30 (140)
453 KOG0686 COP9 signalosome, subu 55.0 2.5E+02 0.0054 28.7 13.9 137 301-437 151-310 (466)
454 TIGR02710 CRISPR-associated pr 54.8 2.5E+02 0.0055 28.7 13.6 61 122-182 136-196 (380)
455 PRK15490 Vi polysaccharide bio 54.8 1E+02 0.0022 33.4 10.2 81 58-140 18-98 (578)
456 cd02681 MIT_calpain7_1 MIT: do 54.4 22 0.00047 26.6 3.8 16 347-362 19-34 (76)
457 KOG0686 COP9 signalosome, subu 54.3 2.6E+02 0.0056 28.6 13.7 121 131-252 125-256 (466)
458 cd02680 MIT_calpain7_2 MIT: do 54.0 24 0.00051 26.3 3.8 17 170-186 19-35 (75)
459 TIGR00756 PPR pentatricopeptid 53.8 29 0.00064 20.4 3.9 21 374-394 6-26 (35)
460 TIGR00756 PPR pentatricopeptid 53.6 29 0.00062 20.4 3.8 28 404-431 2-29 (35)
461 KOG2280 Vacuolar assembly/sort 53.4 3.6E+02 0.0078 30.0 23.6 104 307-426 691-794 (829)
462 KOG4279 Serine/threonine prote 53.1 91 0.002 34.3 9.3 183 224-435 200-399 (1226)
463 cd02679 MIT_spastin MIT: domai 52.7 29 0.00063 26.2 4.2 14 382-395 22-35 (79)
464 PF06957 COPI_C: Coatomer (COP 52.7 69 0.0015 33.1 8.2 104 48-151 204-335 (422)
465 PRK12798 chemotaxis protein; R 52.5 2.8E+02 0.0061 28.6 21.1 30 191-220 257-286 (421)
466 cd02679 MIT_spastin MIT: domai 51.7 28 0.0006 26.2 4.0 15 348-362 22-36 (79)
467 PHA02537 M terminase endonucle 51.7 25 0.00055 32.8 4.6 94 57-150 92-212 (230)
468 PF10037 MRP-S27: Mitochondria 51.5 3.1E+02 0.0067 28.7 13.9 90 340-431 72-167 (429)
469 KOG4151 Myosin assembly protei 50.6 65 0.0014 35.6 8.0 104 51-154 56-165 (748)
470 PRK15490 Vi polysaccharide bio 50.5 1.6E+02 0.0035 31.9 10.8 79 312-392 20-98 (578)
471 TIGR03362 VI_chp_7 type VI sec 49.3 2.8E+02 0.006 27.5 18.6 157 51-220 102-279 (301)
472 TIGR03362 VI_chp_7 type VI sec 49.2 2.8E+02 0.006 27.5 16.7 147 279-433 112-281 (301)
473 COG3014 Uncharacterized protei 49.0 2.8E+02 0.0062 27.6 13.8 39 223-261 211-249 (449)
474 cd02682 MIT_AAA_Arch MIT: doma 48.5 1.1E+02 0.0024 22.8 6.8 21 164-184 13-33 (75)
475 PF13812 PPR_3: Pentatricopept 48.3 53 0.0011 19.2 4.4 22 373-394 6-27 (34)
476 COG4091 Predicted homoserine d 47.6 56 0.0012 32.4 6.3 95 484-586 14-122 (438)
477 PF08311 Mad3_BUB1_I: Mad3/BUB 47.5 1.7E+02 0.0036 24.5 13.0 43 318-360 81-125 (126)
478 KOG4563 Cell cycle-regulated h 47.3 41 0.00088 33.4 5.3 59 44-102 37-103 (400)
479 cd02681 MIT_calpain7_1 MIT: do 47.2 37 0.0008 25.4 4.0 29 48-76 6-34 (76)
480 PF11846 DUF3366: Domain of un 46.9 67 0.0015 29.3 6.8 49 208-257 128-176 (193)
481 PF04212 MIT: MIT (microtubule 46.5 45 0.00098 24.2 4.5 27 50-76 7-33 (69)
482 PF02670 DXP_reductoisom: 1-de 46.4 40 0.00088 28.3 4.6 82 501-587 9-111 (129)
483 PRK12798 chemotaxis protein; R 45.8 3.6E+02 0.0078 27.8 23.5 199 190-427 111-320 (421)
484 PF03745 DUF309: Domain of unk 45.5 1.1E+02 0.0024 21.8 7.9 58 121-179 4-61 (62)
485 cd02683 MIT_1 MIT: domain cont 45.0 1.3E+02 0.0028 22.5 6.8 29 48-76 6-34 (77)
486 PF04348 LppC: LppC putative l 44.9 7.2 0.00016 42.1 0.0 97 191-291 24-123 (536)
487 KOG4151 Myosin assembly protei 42.7 63 0.0014 35.7 6.5 98 307-404 60-163 (748)
488 PF09205 DUF1955: Domain of un 41.7 2.2E+02 0.0047 24.1 14.0 57 199-255 94-150 (161)
489 KOG2561 Adaptor protein NUB1, 41.6 4.2E+02 0.0091 27.4 11.4 150 256-428 153-327 (568)
490 PF11897 DUF3417: Protein of u 41.4 1.3E+02 0.0027 24.9 6.7 42 460-501 75-116 (118)
491 KOG0292 Vesicle coat complex C 41.2 3.5E+02 0.0075 30.8 11.5 121 49-191 992-1137(1202)
492 KOG4521 Nuclear pore complex, 40.9 6.9E+02 0.015 29.7 14.5 168 82-256 920-1134(1480)
493 cd02683 MIT_1 MIT: domain cont 40.7 1.5E+02 0.0034 22.2 6.6 14 129-142 19-32 (77)
494 PF07219 HemY_N: HemY protein 40.1 1.4E+02 0.003 24.2 6.8 48 84-131 61-108 (108)
495 PF10938 YfdX: YfdX protein; 39.9 2.1E+02 0.0045 25.1 8.2 93 52-144 6-145 (155)
496 KOG4521 Nuclear pore complex, 39.6 7.2E+02 0.016 29.6 14.1 30 191-220 920-949 (1480)
497 cd02684 MIT_2 MIT: domain cont 39.0 51 0.0011 24.6 3.7 34 315-363 2-35 (75)
498 PF06957 COPI_C: Coatomer (COP 38.6 1.8E+02 0.0038 30.2 8.7 29 410-438 308-336 (422)
499 KOG2836 Protein tyrosine phosp 38.4 28 0.0006 28.8 2.4 32 587-629 5-36 (173)
500 PF04212 MIT: MIT (microtubule 38.3 75 0.0016 23.0 4.6 24 407-430 10-33 (69)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-119 Score=873.77 Aligned_cols=655 Identities=37% Similarity=0.537 Sum_probs=607.0
Q ss_pred ccCCCCCCccccccccCCCCCCCCCCCCCcccccccccCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 005594 8 VSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIG 87 (689)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 87 (689)
.....++.+.....+.++...+.....+..+ ....+.-++.+-.+|+++..+|++++|+.+|+.++++.|++.++|.+
T Consensus 78 d~t~~~~llll~ai~~q~~r~d~s~a~~~~a--~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~in 155 (966)
T KOG4626|consen 78 DPTNTERLLLLSAIFFQGSRLDKSSAGSLLA--IRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYIN 155 (966)
T ss_pred CCCcccceeeehhhhhcccchhhhhhhhhhh--hhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhh
Confidence 3445666667777777766655444443332 22334557778889999999999999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHH
Q 005594 88 KGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167 (689)
Q Consensus 88 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~ 167 (689)
+|.++...|+.+.|.++|..+++++|+...+...+|.++..+|+..+|..+|.++++..|...- +|.++|..+
T Consensus 156 la~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAi-------awsnLg~~f 228 (966)
T KOG4626|consen 156 LAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAI-------AWSNLGCVF 228 (966)
T ss_pred HHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceee-------eehhcchHH
Confidence 9999999999999999999999999999999999999999999999999999999999997544 488999999
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005594 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 247 (689)
Q Consensus 168 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 247 (689)
..+|+...|+..|+++++++|...++|++||.+|...+.+++|+.+|.+++...|+++.++-++|.+|..+|..+-|+..
T Consensus 229 ~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~ 308 (966)
T KOG4626|consen 229 NAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDT 308 (966)
T ss_pred hhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005594 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (689)
Q Consensus 248 ~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 327 (689)
|++++++.|+.++++.+++.++..+ |+..+|..+|.+++.+.|.++++.++||.++.++|++++|..+|.+++
T Consensus 309 Ykral~~~P~F~~Ay~NlanALkd~-------G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al 381 (966)
T KOG4626|consen 309 YKRALELQPNFPDAYNNLANALKDK-------GSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKAL 381 (966)
T ss_pred HHHHHhcCCCchHHHhHHHHHHHhc-------cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 9999999999999998888888775 699999999999999999999999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 005594 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407 (689)
Q Consensus 328 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 407 (689)
+..|..+.+..+||.+|.++|++++|+.+|++++++.|..++++.++|..|..+|+.+.|+.+|.+++..+|..++++.+
T Consensus 382 ~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsN 461 (966)
T KOG4626|consen 382 EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSN 461 (966)
T ss_pred hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHhhhccCCCh-----HHHHHHHHHHHH--HHhhh---------
Q 005594 408 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD-----DKLFEAHRDWGK--RFMRL--------- 471 (689)
Q Consensus 408 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~--------- 471 (689)
||.+|...|+..+|++.|+.+++++||.+++..|++.++.++..|.+ +++....++|.. ++...
T Consensus 462 Lasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~sivrdql~~~rlpsvhP~hsm~yp 541 (966)
T KOG4626|consen 462 LASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRDQLEKNRLPSVHPHHSMLYP 541 (966)
T ss_pred HHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHHHHHHHHHHhhhcCCccCcccccccc
Confidence 99999999999999999999999999999999999999999999987 777888888873 33221
Q ss_pred -------------------------ccccccCCCCCCCCCCeEEEEecCCcccchHHHHHHhhccccCCCceEEEEEeCC
Q 005594 472 -------------------------YSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAV 526 (689)
Q Consensus 472 -------------------------~~~~~~~~~~~~~~~~lriG~~S~d~~~h~v~~~~~~~~~~~d~~~fev~~y~~~ 526 (689)
.+++..|.+-+.+++||||||||+||.+||+++||..++.+|||++||||||+.+
T Consensus 542 l~~~~~~aia~k~a~~c~~~~~~~~k~pyth~~~l~~~~~rlrIGYvSsDFgnHp~Shlmqsv~gmHdr~kveVfcYals 621 (966)
T KOG4626|consen 542 LSHILRKAIAAKHANLCLDKVHVLGKPPYTHPDNLKVKEGRLRIGYVSSDFGNHPTSHLMQSVPGMHDRSKVEVFCYALS 621 (966)
T ss_pred cchHHHHHHHHHHhhhhHHHHHhccCCCCCChhhCCCCcCceEEEeecccccCCchHHHhccCcCcCCccceEEEEEEee
Confidence 2346677778888999999999999999999999999999999999999999987
Q ss_pred CCCChHhHHHHHHhhhcCCceEeCCCCCHHHHHHHHHhCCCcEEEecCCCCCCCchhhhccCCCceEEecccCCCCCCCC
Q 005594 527 VKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLP 606 (689)
Q Consensus 527 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~idilvdl~g~t~~~~~~~~a~r~APvq~~~~G~p~t~g~~ 606 (689)
+.++.. ||..+.++++||+|+++++...+|..|++|+|||||+|+|||.|+|.++||+|||||||+|+|||||||++
T Consensus 622 ~~d~t~---fR~kv~~e~ehf~Dls~i~~~kiA~~I~qD~I~ILvnlnGyTkgarneifAlrPAPIQv~wlGyPgTtGa~ 698 (966)
T KOG4626|consen 622 VNDGTN---FRDKVMKEAEHFVDLSQIPCNKIADKIRQDKIHILVNLNGYTKGARNEIFALRPAPIQVMWLGYPGTTGAT 698 (966)
T ss_pred cCCCch---HHHHHHhhccceeehhcCChHHHHHHHhhcCceEEEeccccccccccceeeccCCceeEEeecCCCCCCCc
Confidence 744422 78888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEeecCCCCCccccccCccceeecCCCccccCCCC--------CCCCCCCCCCCCCCCEEEEeCCCCCCCCHHHHHh
Q 005594 607 TIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSP--------EAGPVCPTPALTNGFITFGSFNNLAKCKTQISFN 678 (689)
Q Consensus 607 ~~Dy~i~d~~~~p~~~~~~y~E~l~~lp~~~~~~~~~~--------~~~~~~~~~~~~~~~~~f~~~n~~~k~~~~~~~~ 678 (689)
+|||+|||.++.|++....|+|||++|||||+|+++.+ ..-|+++.++|++|+|||||||+++||+|+|+..
T Consensus 699 ~mDYiITDs~tsPl~~a~~ysEkLv~lPh~ffi~d~~qk~~~~~dpn~kP~r~~y~Lp~d~vvf~~FNqLyKidP~~l~~ 778 (966)
T KOG4626|consen 699 FMDYIITDSVTSPLELAQQYSEKLVYLPHCFFIGDHKQKNQDVLDPNNKPTRSQYGLPEDAVVFCNFNQLYKIDPSTLQM 778 (966)
T ss_pred eeeEEeecccCChHHHHHHHHHHHhhCCceEEecCcccccccccCCCCCCCCCCCCCCCCeEEEeechhhhcCCHHHHHH
Confidence 99999999999999999999999999999999999876 4456778899999999999999999999999999
Q ss_pred hhh
Q 005594 679 IGA 681 (689)
Q Consensus 679 w~~ 681 (689)
|.+
T Consensus 779 W~~ 781 (966)
T KOG4626|consen 779 WAN 781 (966)
T ss_pred HHH
Confidence 987
No 2
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-66 Score=509.60 Aligned_cols=383 Identities=26% Similarity=0.395 Sum_probs=300.2
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005594 281 DINQGVAYYKKALYYNWHYADAMYN--LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358 (689)
Q Consensus 281 ~~~~A~~~~~~al~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 358 (689)
...-++..+...+..++.++..+.. +...+...+....+.......+..+|.+..+..+++......|....+...+.
T Consensus 46 ~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~ 125 (620)
T COG3914 46 LQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADIS 125 (620)
T ss_pred chhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3344555566666677777765433 47777778888888888899999999999999999988887777666655554
Q ss_pred H-HHhcCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594 359 M-ALSIKPNFSQSLNNL------GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (689)
Q Consensus 359 ~-al~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (689)
. +....|++.+....+ +.....+|+..++...++++..+.|.++.+...+......+..+. ..
T Consensus 126 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~~----------~~ 195 (620)
T COG3914 126 EIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSWP----------EE 195 (620)
T ss_pred HHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccch----------hc
Confidence 4 788888887765555 888888888999999999999999988776666655544443333 23
Q ss_pred CCCChhhHhhHHHH-----hhhccCCChHHHHHHHHHHHHHHhhhc---cccccCC-CCCCCCCCeEEEEecCCcccchH
Q 005594 432 DPDSRNAGQNRLLA-----MNYINEGHDDKLFEAHRDWGKRFMRLY---SQYTSWD-NTKDPERPLVIGYVSPDYFTHSV 502 (689)
Q Consensus 432 ~p~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~lriG~~S~d~~~h~v 502 (689)
.|.+-.......+. ..++.+ ++........+....+.... .+++.|. +....++|+||||+|+|++.|+|
T Consensus 196 ~~tnl~~~~~~~~~~~~~~~~~~~d-~p~~~l~~~~q~~~i~~~~~~~~~~~~~~~~~~~~~~~rlRvGylS~dlr~Hav 274 (620)
T COG3914 196 APTNLLSQLALFLGIYGFSLAYLAD-DPLKNLAIANQLLKILSQNAPELVRFPIRDENIKRNGKRLRVGYLSSDLRSHAV 274 (620)
T ss_pred cchHHHHHHHHHhhccccchhhhcc-chhhhHHHHHHHHHHhcccCCCccccccchhhccccccceeEEEeccccccchH
Confidence 33333222222211 122222 12233333444444444222 2334444 23345789999999999999999
Q ss_pred HHHHHhhccccCCCceEEEEEeCC-CCCChHhHHHHHHhhhcCCceEeCCCCCHHHHHHHHHhCCCcEEEecCCCCCCCc
Q 005594 503 SYFIEAPLVYHDYQNYKVVVYSAV-VKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNK 581 (689)
Q Consensus 503 ~~~~~~~~~~~d~~~fev~~y~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~idilvdl~g~t~~~~ 581 (689)
++++.+++++|||++||||+|+.+ ++.|..+.|++..+ .+|.++.+|+|.++|++|+.|+||||||++|||..+|
T Consensus 275 g~l~~~v~e~hDRdkfEvfay~~g~~~~dal~~rI~a~~----~~~~~~~~~dd~e~a~~I~~d~IdILvDl~g~T~d~r 350 (620)
T COG3914 275 GFLLRWVFEYHDRDKFEVFAYSLGPPHTDALQERISAAV----EKWYPIGRMDDAEIANAIRTDGIDILVDLDGHTVDTR 350 (620)
T ss_pred HHHHHHHHHHhchhheEEEEEecCCCCchhHHHHHHHhh----hheeccCCcCHHHHHHHHHhcCCeEEEeccCceeccc
Confidence 999999999999999999999998 66788999999988 6799999999999999999999999999999999999
Q ss_pred hhhhccCCCceEEecccCCCCCCCCcccEEeecCCCCCccccccCccceeecCCCccccCCCCCCCCCCCC-----CCCC
Q 005594 582 LGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPT-----PALT 656 (689)
Q Consensus 582 ~~~~a~r~APvq~~~~G~p~t~g~~~~Dy~i~d~~~~p~~~~~~y~E~l~~lp~~~~~~~~~~~~~~~~~~-----~~~~ 656 (689)
++|||.|||||||||+|||+|||+|.|||||+|++|+||+.|.+|||||||||. ||+|.+.-.++.|+ ++++
T Consensus 351 ~~v~A~RpAPiqvswlGy~aT~g~p~~DY~I~D~y~vPp~ae~yysEkl~RLp~---cy~p~d~~~~v~p~~sR~~lglp 427 (620)
T COG3914 351 CQVFAHRPAPIQVSWLGYPATTGSPNMDYFISDPYTVPPTAEEYYSEKLWRLPQ---CYQPVDGFEPVTPPPSRAQLGLP 427 (620)
T ss_pred hhhhhcCCCceEEeecccccccCCCcceEEeeCceecCchHHHHHHHHHHhccc---ccCCCCCcccCCCCcchhhcCCC
Confidence 999999999999999999999999999999999999999999999999999994 67888776666655 5789
Q ss_pred CCCEEEEeCCCCCCCCHHHHHhhhh
Q 005594 657 NGFITFGSFNNLAKCKTQISFNIGA 681 (689)
Q Consensus 657 ~~~~~f~~~n~~~k~~~~~~~~w~~ 681 (689)
+++||||||||.+||||++|++|.+
T Consensus 428 ~~avVf~c~~n~~K~~pev~~~wmq 452 (620)
T COG3914 428 EDAVVFCCFNNYFKITPEVFALWMQ 452 (620)
T ss_pred CCeEEEEecCCcccCCHHHHHHHHH
Confidence 9999999999999999999999987
No 3
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=100.00 E-value=1.6e-57 Score=452.87 Aligned_cols=151 Identities=44% Similarity=0.801 Sum_probs=125.5
Q ss_pred eEEEEecCCcccchHHHHHHhhccccCCCceEEEEEeCCCCC-ChHhHHHHHHhhhcCCceEeCCCCC-HHHHHHHHHhC
Q 005594 488 LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKA-DAKTIRFREKVMKKGGIWRDIYGID-EKKVAAMVRED 565 (689)
Q Consensus 488 lriG~~S~d~~~h~v~~~~~~~~~~~d~~~fev~~y~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~d 565 (689)
|||||||+||++||+++|+.+++++|||++|||++|+.++.+ +..+++++..+ ++|+++.+++ +.++|++|++|
T Consensus 1 LRIGyvS~Df~~Hpv~~l~~~ll~~hDr~rfev~~Ys~~~~d~~~~~~~~~~~~----~~~~dl~~~~~~~~~A~~Ir~D 76 (468)
T PF13844_consen 1 LRIGYVSSDFRNHPVGHLLQPLLENHDRSRFEVFCYSLGPDDGDTFRQRIRAEA----DHFVDLSGLSDDAEAAQRIRAD 76 (468)
T ss_dssp EEEEEEES-SSSSHHHHHHHHHHHHHHHHTEEEEEEESS---SCHHHHHHHHHS----EEEEEEEE-TTSHHHHHHHHHT
T ss_pred CEEEEECCcchhCHHHHHHHHHHHhcCcccEEEEEEECCCCCCcHHHHHHHHhC----CeEEECccCCcHHHHHHHHHHC
Confidence 799999999999999999999999999999999999988654 45777777765 7999999987 68999999999
Q ss_pred CCcEEEecCCCCCCCchhhhccCCCceEEecccCCCCCCCCcccEEeecCCCCCccccccCccceeecCCCccccCC
Q 005594 566 KIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTP 642 (689)
Q Consensus 566 ~idilvdl~g~t~~~~~~~~a~r~APvq~~~~G~p~t~g~~~~Dy~i~d~~~~p~~~~~~y~E~l~~lp~~~~~~~~ 642 (689)
+|||||||+|||.++|+.|||+|||||||+|||||+|||+++|||+|+|++++|++.+.||+|||+|||++|+|+++
T Consensus 77 ~IDILVDL~GhT~~~R~~ifA~RpAPVQvswlGyp~TtG~~~mDY~ItD~~~~P~~~~~~ysEkLirLP~sy~~~d~ 153 (468)
T PF13844_consen 77 GIDILVDLSGHTAGNRLEIFALRPAPVQVSWLGYPGTTGLPAMDYIITDPVTDPPEAEEHYSEKLIRLPHSYFCNDH 153 (468)
T ss_dssp T-SEEEESSTSSTSSSHHHHHT-SSSEEEEESSSSS---STT--EEEEETTTS-GGGGGG-SSEEEEESS-S----H
T ss_pred CCCEEEeCCCcCCCCHhHHHhcCCcceEEEecCCCcccCCcccCEEEECCCcCCcccccCCccceEEccCceEECCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999854
No 4
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=6.7e-47 Score=369.48 Aligned_cols=401 Identities=28% Similarity=0.431 Sum_probs=372.4
Q ss_pred cCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC----------------------------------HHHHHhHHH
Q 005594 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN----------------------------------VEAHIGKGI 90 (689)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----------------------------------~~~~~~la~ 90 (689)
.......+++|...++.|+|.+|++.+..+-..+|.+ .+++-++|.
T Consensus 45 ~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN 124 (966)
T KOG4626|consen 45 HEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLAN 124 (966)
T ss_pred CccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHH
Confidence 3445568999999999999999999988776665543 567888999
Q ss_pred HHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHc
Q 005594 91 CLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170 (689)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~ 170 (689)
++...|++++|+..|+.++++.|+..++|.++|.++...|+.+.|..+|..+++++|....+ ...+|..+...
T Consensus 125 ~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca-------~s~lgnLlka~ 197 (966)
T KOG4626|consen 125 ILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCA-------RSDLGNLLKAE 197 (966)
T ss_pred HHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhh-------hcchhHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999986555 77888999999
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005594 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250 (689)
Q Consensus 171 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 250 (689)
|+..+|..+|.++++..|..+.+|.+||.++..+|+...|+..|+++++++|...++|+++|.+|...+.++.|+.+|.+
T Consensus 198 Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~r 277 (966)
T KOG4626|consen 198 GRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLR 277 (966)
T ss_pred cccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 005594 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 330 (689)
Q Consensus 251 al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 330 (689)
++.+.|++.. ++.+++.+|..+|..+-|+..|+++++..|..++++.++|.++...|+..+|..+|.+++.+.
T Consensus 278 Al~lrpn~A~-------a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 278 ALNLRPNHAV-------AHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred HHhcCCcchh-------hccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 9999998764 556677777789999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 005594 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410 (689)
Q Consensus 331 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 410 (689)
|..+++.++||.++.++|.+++|...|.++++..|+.+.+..+||.+|.++|++++|+.+|+.++.+.|..++++.++|.
T Consensus 351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGn 430 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGN 430 (966)
T ss_pred CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHhhhccCCChHHHHHHH
Q 005594 411 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAH 461 (689)
Q Consensus 411 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (689)
.|..+|+...|+++|.+|+.++|...+++.|+ +..|-..|+-.+++..+
T Consensus 431 t~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNL--asi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 431 TYKEMGDVSAAIQCYTRAIQINPTFAEAHSNL--ASIYKDSGNIPEAIQSY 479 (966)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhH--HHHhhccCCcHHHHHHH
Confidence 99999999999999999999999999999985 45566667766655443
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=9.6e-36 Score=326.02 Aligned_cols=382 Identities=16% Similarity=0.174 Sum_probs=331.7
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005594 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (689)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (689)
+..+..+|..++..|+|++|+..|+++++..|+ +..+.++|.||..+|++++|++.++++++++|++..+++.+|.++.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 445778999999999999999999999999996 7789999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHH------------------------------HHHHHHH------------------
Q 005594 128 DEGRLVEAAESYHKALSADPSYKPA------------------------------AECLAIV------------------ 159 (689)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~~~~------------------------------~~~~a~~------------------ 159 (689)
.+|++++|+..|..+....+..... ...++..
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 9999999999887766554332211 0001110
Q ss_pred --------HHHhHHHH---HHcCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005594 160 --------LTDLGTSL---KLAGNTQDGIQKYYEALKI---DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225 (689)
Q Consensus 160 --------~~~l~~~~---~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 225 (689)
+..++... ...+++++|+..|++++.. .|....++..+|.++..+|++++|+..++++++.+|...
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~ 365 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT 365 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 01111111 1236899999999999986 477788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 005594 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 305 (689)
Q Consensus 226 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 305 (689)
..+..+|.++...|++++|+..|+++++.+|++...+..++.+ +...|++++|+..|+++++.+|++...+..
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~-------~~~~g~~~~A~~~~~kal~l~P~~~~~~~~ 438 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQL-------HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQ 438 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-------HHHcCCHHHHHHHHHHHHHcCccCHHHHHH
Confidence 9999999999999999999999999999999988766555544 455789999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH------HHHHHHHH-
Q 005594 306 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS------LNNLGVVY- 378 (689)
Q Consensus 306 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~la~~~- 378 (689)
+|.++..+|++++|+..|+++++..|.++.++..+|.++...|++++|++.|++++++.|+.... +...+.++
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999875332 22333333
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 005594 379 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (689)
Q Consensus 379 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (689)
...|++++|+..++++++++|++..++..+|.++..+|++++|+.+|++++++.+...+
T Consensus 519 ~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 44799999999999999999999999999999999999999999999999999887554
No 6
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.2e-34 Score=331.49 Aligned_cols=404 Identities=20% Similarity=0.190 Sum_probs=328.9
Q ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 005594 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (689)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (689)
++..+..+|..+...|++++|+..|+++++.+|++..+++.++.++...|++++|++.|+++++.+|.+..++..++.++
T Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 543 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLY 543 (899)
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 45667778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 005594 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (689)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 206 (689)
...|++++|+..++++++.+|.+... +..++..+...|++++|+..++++++..|.+...+..+|.++...|+
T Consensus 544 ~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 616 (899)
T TIGR02917 544 LRTGNEEEAVAWLEKAAELNPQEIEP-------ALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGD 616 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhCccchhH-------HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 88888888888888888888877654 55667777778888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHH-----------------
Q 005594 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL----------------- 269 (689)
Q Consensus 207 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~----------------- 269 (689)
+++|+..|+++++..|.++..+..+|.++...|++++|+..++++++..|++...+..++.++
T Consensus 617 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 696 (899)
T TIGR02917 617 LNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ 696 (899)
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888766655554443
Q ss_pred ----------HHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 005594 270 ----------TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 339 (689)
Q Consensus 270 ----------~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 339 (689)
..+|.++...|++++|+..|++++...|++ ..+..++.++...|++++|+..++++++.+|++..++..
T Consensus 697 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 775 (899)
T TIGR02917 697 KQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTA 775 (899)
T ss_pred hhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 334556667788888888888888887776 667778888888888888888888888888888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 005594 340 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419 (689)
Q Consensus 340 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 419 (689)
+|.++...|++++|+..|+++++.+|+++.++..++.++...|+ .+|+.+++++++..|+++..+..+|.++...|+++
T Consensus 776 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 854 (899)
T TIGR02917 776 LAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEAD 854 (899)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 88888888888888888888888888888888888888888888 77888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhcCCCChhhHhhHHHHhhhccCCChHHHHHHH
Q 005594 420 LAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAH 461 (689)
Q Consensus 420 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (689)
+|+.+|+++++.+|+++.+..++ +..+...|+.+++.+..
T Consensus 855 ~A~~~~~~a~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~ 894 (899)
T TIGR02917 855 RALPLLRKAVNIAPEAAAIRYHL--ALALLATGRKAEARKEL 894 (899)
T ss_pred HHHHHHHHHHhhCCCChHHHHHH--HHHHHHcCCHHHHHHHH
Confidence 88888888888888877766654 44455566666554443
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=4.8e-33 Score=324.00 Aligned_cols=393 Identities=16% Similarity=0.121 Sum_probs=298.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHH--------------H
Q 005594 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC--------------A 118 (689)
Q Consensus 53 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~ 118 (689)
.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++.. .
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 45888999999999999999999999999999999999999999999999999999999997643 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 005594 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (689)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 198 (689)
...+|.++...|++++|+..|+++++.+|++..+ +..+|.++...|++++|++.|+++++.+|++..++..++
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a-------~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~ 426 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYA-------VLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA 426 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 2355788999999999999999999999998765 777889999999999999999999999999988877777
Q ss_pred HHHH------------------------------------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005594 199 VVYS------------------------------------------ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236 (689)
Q Consensus 199 ~~~~------------------------------------------~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 236 (689)
.++. ..|++++|++.|+++++.+|+++.+++.+|.++.
T Consensus 427 ~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 427 NLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLR 506 (1157)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 6653 3445555555555555555555555555555555
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCC----------HHHHHHH
Q 005594 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY----------ADAMYNL 306 (689)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~----------~~~~~~l 306 (689)
..|++++|+..++++++..|++...+..++.. +...++.++|+..++++....... ......+
T Consensus 507 ~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~-------l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~ 579 (1157)
T PRK11447 507 QAGQRSQADALMRRLAQQKPNDPEQVYAYGLY-------LSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLET 579 (1157)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH-------HHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHH
Confidence 55555555555555555555444333322221 122344555555444432111100 0112234
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 005594 307 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 386 (689)
Q Consensus 307 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 386 (689)
+..+...|++++|+.+++ ..|.++..+..+|.++.+.|++++|+..|+++++.+|+++.++..++.++...|++++
T Consensus 580 a~~l~~~G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~e 655 (1157)
T PRK11447 580 ANRLRDSGKEAEAEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAA 655 (1157)
T ss_pred HHHHHHCCCHHHHHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 455555555555555544 5788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh----HhhHHHHhhhccCCChHHHHHHHH
Q 005594 387 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA----GQNRLLAMNYINEGHDDKLFEAHR 462 (689)
Q Consensus 387 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 462 (689)
|++.++++++..|++..++..+|.++..+|++++|++.|++++...|+++.. ...+..+..+...|+.+++.+.++
T Consensus 656 A~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~ 735 (1157)
T PRK11447 656 ARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYK 735 (1157)
T ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998776542 222233555667787777766555
Q ss_pred H
Q 005594 463 D 463 (689)
Q Consensus 463 ~ 463 (689)
.
T Consensus 736 ~ 736 (1157)
T PRK11447 736 D 736 (1157)
T ss_pred H
Confidence 4
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.5e-32 Score=319.92 Aligned_cols=394 Identities=16% Similarity=0.150 Sum_probs=313.4
Q ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCC--------------------------
Q 005594 60 SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP-------------------------- 113 (689)
Q Consensus 60 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------------------------- 113 (689)
..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++..+
T Consensus 159 ~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l 238 (1157)
T PRK11447 159 LPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAAL 238 (1157)
T ss_pred CCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHH
Confidence 346777777777777777777777777777777777777777777777654321
Q ss_pred --------CCHHH--------------------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHH
Q 005594 114 --------QNACA--------------------HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165 (689)
Q Consensus 114 --------~~~~~--------------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~ 165 (689)
+.... ...+|.++...|++++|+..|+++++.+|++..+ +..+|.
T Consensus 239 ~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a-------~~~Lg~ 311 (1157)
T PRK11447 239 QKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEA-------LGALGQ 311 (1157)
T ss_pred HHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHH
Confidence 11100 0123566667777777777777777777777654 666777
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005594 166 SLKLAGNTQDGIQKYYEALKIDPHYAP--------------AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNM 231 (689)
Q Consensus 166 ~~~~~~~~~~A~~~~~~al~~~~~~~~--------------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 231 (689)
++...|++++|+..|+++++.+|++.. ....+|.++...|++++|+..|+++++.+|++..++..+
T Consensus 312 ~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~L 391 (1157)
T PRK11447 312 AYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGL 391 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 777778888888888888877776532 123446677778888888888888888888888899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHH-----------------------------------HHhhhhh
Q 005594 232 GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL-----------------------------------TDLGTKV 276 (689)
Q Consensus 232 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-----------------------------------~~l~~~~ 276 (689)
|.++...|++++|++.|+++++.+|++...+..++.++ ..++..+
T Consensus 392 g~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~ 471 (1157)
T PRK11447 392 GDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEAL 471 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999999999999999999999999887766555443 2345667
Q ss_pred hhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005594 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 356 (689)
Q Consensus 277 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 356 (689)
...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++.+|+++..++.++..+...+++++|+..
T Consensus 472 ~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~ 551 (1157)
T PRK11447 472 ENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAH 551 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999988888887778888877776
Q ss_pred HHHH----------------------------------------HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005594 357 YQMA----------------------------------------LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396 (689)
Q Consensus 357 ~~~a----------------------------------------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 396 (689)
++++ ++..|.++..+..+|.++.+.|++++|+..|+++++
T Consensus 552 l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~ 631 (1157)
T PRK11447 552 LNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT 631 (1157)
T ss_pred HHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6542 234688888999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHhhhccCCChHHHHHHHH
Q 005594 397 ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 462 (689)
Q Consensus 397 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (689)
.+|+++.++..++.++...|++++|++.++++++..|++..+...+ +..+...|+.+++.+..+
T Consensus 632 ~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~l--a~~~~~~g~~~eA~~~~~ 695 (1157)
T PRK11447 632 REPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRV--ALAWAALGDTAAAQRTFN 695 (1157)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHH--HHHHHhCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999988776553 445556677666554433
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.9e-32 Score=317.46 Aligned_cols=387 Identities=20% Similarity=0.213 Sum_probs=324.1
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 005594 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE 129 (689)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (689)
....++..+...|++++|+..+++.+...|.++..+..+|.++...|++++|+..|+++++.+|++..++..++.++...
T Consensus 433 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 512 (899)
T TIGR02917 433 ADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQE 512 (899)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHC
Confidence 34445556666666666666666666666777777777888888888888888888888888888777788888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 005594 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDT 209 (689)
Q Consensus 130 g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~ 209 (689)
|++++|+..|++++...|.+... +..++.++...|++++|+..+++++..+|.+...+..++.++...|++++
T Consensus 513 g~~~~A~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 585 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTIDPKNLRA-------ILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKK 585 (899)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHH
Confidence 88888888888888777776554 55667777778888888888888888888888888888888888899999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHH
Q 005594 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289 (689)
Q Consensus 210 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 289 (689)
|+..++++++..|.+...+..+|.++...|++++|+..|+++++..|.+...+..+ +.++...|++++|+..+
T Consensus 586 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~ 658 (899)
T TIGR02917 586 ALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLL-------ADAYAVMKNYAKAITSL 658 (899)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH-------HHHHHHcCCHHHHHHHH
Confidence 99998888888888888899999999999999999999999988888876555444 44445567999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 005594 290 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 369 (689)
Q Consensus 290 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 369 (689)
+++++.+|++..++..++.++...|++++|+..++.+.+..|.+...+..+|.++...|++++|++.|++++...|++ .
T Consensus 659 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~ 737 (899)
T TIGR02917 659 KRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-Q 737 (899)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-h
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998887 7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHhhhc
Q 005594 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYI 449 (689)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 449 (689)
.+..++.++...|++++|++.++++++..|++..++..+|.++...|++++|+..|+++++.+|+++.+..++. ..+.
T Consensus 738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~--~~~~ 815 (899)
T TIGR02917 738 NAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLA--WLYL 815 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHH
Confidence 78889999999999999999999999999999999999999999999999999999999999999888776643 3444
Q ss_pred cCCC
Q 005594 450 NEGH 453 (689)
Q Consensus 450 ~~~~ 453 (689)
..++
T Consensus 816 ~~~~ 819 (899)
T TIGR02917 816 ELKD 819 (899)
T ss_pred hcCc
Confidence 4555
No 10
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=1.8e-32 Score=298.62 Aligned_cols=364 Identities=10% Similarity=-0.021 Sum_probs=327.5
Q ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005594 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (689)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (689)
.....+...+..+...|++++|+.+++.++...|+++.+++.+|.+....|++++|+..|+++++.+|+++.++..+|.+
T Consensus 40 ~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~ 119 (656)
T PRK15174 40 GNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASV 119 (656)
T ss_pred ccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 34556778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 005594 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (689)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 205 (689)
+...|++++|+..|+++++++|++... +..++.++...|++++|+..+++++...|++..++..++ .+...|
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~P~~~~a-------~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g 191 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAFSGNSQI-------FALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKS 191 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHH-------HHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcC
Confidence 999999999999999999999998776 667788888999999999999999999999998887765 488999
Q ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHH
Q 005594 206 QYDTALGCYEKAALERP-MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (689)
Q Consensus 206 ~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (689)
++++|+..++++++..| ........++.++...|++++|+..+++++...|++...+..++.++.. .|++++
T Consensus 192 ~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~-------~G~~~e 264 (656)
T PRK15174 192 RLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQ-------SGRSRE 264 (656)
T ss_pred CHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-------cCCchh
Confidence 99999999999998875 3344556678899999999999999999999999987766665555555 567775
Q ss_pred ----HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594 285 ----GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360 (689)
Q Consensus 285 ----A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 360 (689)
|+..++++++.+|++..++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++
T Consensus 265 A~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~a 344 (656)
T PRK15174 265 AKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQL 344 (656)
T ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 005594 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (689)
Q Consensus 361 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (689)
++.+|++...+..+|.++...|++++|+..|+++++.+|++. ...+++|+..|.++++..+...
T Consensus 345 l~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~~~~~~ 408 (656)
T PRK15174 345 AREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQISAVNLPP 408 (656)
T ss_pred HHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHHhcCCcc
Confidence 999999988888889999999999999999999999999864 3455677777877777665543
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.5e-31 Score=292.88 Aligned_cols=364 Identities=20% Similarity=0.179 Sum_probs=308.2
Q ss_pred HHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005594 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161 (689)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~ 161 (689)
...+..+|..++..|++++|+..|+++++..|+ +..+.++|.+|..+|++++|+..++++++++|++..+ +.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a-------~~ 198 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKA-------LN 198 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHH-------HH
Confidence 456778999999999999999999999999996 7789999999999999999999999999999998776 77
Q ss_pred HhHHHHHHcCChHHHHHHHHHHHhhCCC------------------------------CHHHH-----------------
Q 005594 162 DLGTSLKLAGNTQDGIQKYYEALKIDPH------------------------------YAPAY----------------- 194 (689)
Q Consensus 162 ~l~~~~~~~~~~~~A~~~~~~al~~~~~------------------------------~~~~~----------------- 194 (689)
.+|.++...|++++|+..|..+...++. +...+
T Consensus 199 ~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (615)
T TIGR00990 199 RRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPA 278 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchh
Confidence 7888888899999998877655433221 11111
Q ss_pred ----------------HHHHHHH---HHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005594 195 ----------------YNLGVVY---SELMQYDTALGCYEKAALE---RPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252 (689)
Q Consensus 195 ----------------~~la~~~---~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 252 (689)
..++..+ ...+++++|++.|+++++. .|....++..+|.++..+|++++|+..|++++
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 279 GLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1111111 1235799999999999986 47778899999999999999999999999999
Q ss_pred hcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005594 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH 332 (689)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 332 (689)
+++|+....+..++.++ ...|++++|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++++|+
T Consensus 359 ~l~P~~~~~~~~la~~~-------~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~ 431 (615)
T TIGR00990 359 ELDPRVTQSYIKRASMN-------LELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD 431 (615)
T ss_pred HcCCCcHHHHHHHHHHH-------HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc
Confidence 99999876665555554 44679999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH------H
Q 005594 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY------N 406 (689)
Q Consensus 333 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------~ 406 (689)
+...+..+|.++..+|++++|+..|+++++..|+++.++..+|.++...|++++|++.|++++++.|++...+ .
T Consensus 432 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLI 511 (615)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998753322 2
Q ss_pred HHH-HHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHhhhccCCChHHHHHHHH
Q 005594 407 NLG-VLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 462 (689)
Q Consensus 407 ~la-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (689)
..+ .++...|++++|++.++++++++|++..++.. ++..+...|+.+++.+..+
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~--la~~~~~~g~~~eAi~~~e 566 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALIIDPECDIAVAT--MAQLLLQQGDVDEALKLFE 566 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHccCHHHHHHHHH
Confidence 223 33445799999999999999999998876554 4566667777766655443
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=1.6e-31 Score=291.23 Aligned_cols=366 Identities=12% Similarity=0.020 Sum_probs=326.6
Q ss_pred HhCCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Q 005594 59 RSRNKFVDALALYEIVLEK---DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEA 135 (689)
Q Consensus 59 ~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 135 (689)
+++.+++.---++.+.-+. ..++.......+..+...|++++|+..++.++...|+++.+++.+|.+....|++++|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHH
Confidence 3444554444444443332 2344556677788889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005594 136 AESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 215 (689)
Q Consensus 136 ~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 215 (689)
+..++++++.+|++..+ +..+|.++...|++++|+..|+++++.+|++..++..++.++...|++++|+..++
T Consensus 96 ~~~l~~~l~~~P~~~~a-------~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~ 168 (656)
T PRK15174 96 LQVVNKLLAVNVCQPED-------VLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLAR 168 (656)
T ss_pred HHHHHHHHHhCCCChHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 99999999999999887 67788888899999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhh
Q 005594 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295 (689)
Q Consensus 216 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 295 (689)
+++...|++...+..++ .+...|++++|+..++++++..|...... ...++..+...|++++|+..+++++..
T Consensus 169 ~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~------~~~l~~~l~~~g~~~eA~~~~~~al~~ 241 (656)
T PRK15174 169 TQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQES------AGLAVDTLCAVGKYQEAIQTGESALAR 241 (656)
T ss_pred HHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhH------HHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999998887764 48899999999999999998876432211 122344556688999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 005594 296 NWHYADAMYNLGVAYGEMLKFDM----AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 371 (689)
Q Consensus 296 ~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 371 (689)
+|+++.++..+|.++...|++++ |+..|+++++.+|++..++..+|.++...|++++|+..++++++++|+++.++
T Consensus 242 ~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~ 321 (656)
T PRK15174 242 GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVR 321 (656)
T ss_pred CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999999986 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 005594 372 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (689)
Q Consensus 372 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (689)
..+|.++...|++++|+..|++++..+|++...+..+|.++...|++++|+..|+++++.+|++...
T Consensus 322 ~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~ 388 (656)
T PRK15174 322 AMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQ 388 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchh
Confidence 9999999999999999999999999999998888888999999999999999999999999997543
No 13
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-30 Score=247.61 Aligned_cols=380 Identities=18% Similarity=0.174 Sum_probs=319.0
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005594 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (689)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (689)
+..+-.+|+.++.+|+|++|+++|.++++..|+.+..|.+++-||...|++++.++...++++++|+...+++.++..+.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 44566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhc--------------------------------CCCCHHHHHHHHHHHHH-------------
Q 005594 128 DEGRLVEAAESYHKALSA--------------------------------DPSYKPAAECLAIVLTD------------- 162 (689)
Q Consensus 128 ~~g~~~~A~~~~~~al~~--------------------------------~p~~~~~~~~~a~~~~~------------- 162 (689)
..|++++|+....-..-. .|.-+.+.. ++ .++.
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~f-i~-syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATF-IA-SYFGSFHADPKPLFDNK 272 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHH-HH-HHHhhccccccccccCC
Confidence 999999997654322100 011010000 00 0000
Q ss_pred -------hH--HHHHHc---CChHHHHHHHHHHHhhC----CCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594 163 -------LG--TSLKLA---GNTQDGIQKYYEALKID----PHY---------APAYYNLGVVYSELMQYDTALGCYEKA 217 (689)
Q Consensus 163 -------l~--~~~~~~---~~~~~A~~~~~~al~~~----~~~---------~~~~~~la~~~~~~g~~~~A~~~~~~a 217 (689)
+. .-.... ..|.+|...+.+..... ..+ +.++...|..++-.|++-.|...++++
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA 352 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence 00 011111 24555555555544321 112 667788889999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCC
Q 005594 218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW 297 (689)
Q Consensus 218 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 297 (689)
++++|.....|..++.+|...++.++..+.|.++.+++|++++.++..+++++.+ +++++|+.-|++++.++|
T Consensus 353 I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL-------~q~e~A~aDF~Kai~L~p 425 (606)
T KOG0547|consen 353 IKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLL-------QQYEEAIADFQKAISLDP 425 (606)
T ss_pred HhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHH-------HHHHHHHHHHHHHhhcCh
Confidence 9999999999999999999999999999999999999999998888777777765 599999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHH
Q 005594 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN------FSQSL 371 (689)
Q Consensus 298 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~ 371 (689)
++.-.+..++.+.+++++++++...|+.+.+..|..++++...|.++..++++++|++.|.+++++.|. ++..+
T Consensus 426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~pl 505 (606)
T KOG0547|consen 426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPL 505 (606)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 66666
Q ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 005594 372 NNLGVVYTV-QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (689)
Q Consensus 372 ~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (689)
...|.+..+ .+++.+|+.+++++++++|....++..||.+...+|+.++|+++|+++..+.-...
T Consensus 506 V~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~ 571 (606)
T KOG0547|consen 506 VHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTES 571 (606)
T ss_pred hhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHH
Confidence 666555443 68999999999999999999999999999999999999999999999998765443
No 14
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=100.00 E-value=2e-29 Score=280.90 Aligned_cols=409 Identities=15% Similarity=0.092 Sum_probs=338.3
Q ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005594 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (689)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (689)
.+....-....++...|++++|++.+.++...+|....++..+|.++...|++++|+..|+++++.+|.++.++..++.+
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~ 92 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILT 92 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45556666778889999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 005594 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (689)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 205 (689)
+...|++++|+..++++++..|++.. +..+|.++...|++++|+..++++++..|++..++..++.++...+
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~P~~~~--------~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGAPDKAN--------LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNR 164 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHH--------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999866 3445777778899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHhcCCCcHHHHhhHHHHHHH-
Q 005594 206 QYDTALGCYEKAALERPMYA-----EAYCNMGVIYK-----NRGDL---ESAIACYERCLAVSPNFEIAKNNMAIALTD- 271 (689)
Q Consensus 206 ~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~-----~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~- 271 (689)
..++|+..++++.. .|... .....+..+.. ..+++ ++|++.++++++..|.++........+...
T Consensus 165 ~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 165 LSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred ChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 99999999998765 44321 11222222222 22334 789999999997765554433333333332
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHH
Q 005594 272 LGTKVKLEGDINQGVAYYKKALYYNWHYA-DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYKD 346 (689)
Q Consensus 272 l~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~ 346 (689)
++.+ ...+++++|+..|+++++..+..+ .+...+|.++...|++++|+..|+++++.+|.+ ......++.++..
T Consensus 244 l~~L-l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 244 LGAL-LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHH-HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 3323 456899999999999998865432 344557999999999999999999999988765 4567788888999
Q ss_pred cCCHHHHHHHHHHHHhcCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 005594 347 RDNLDKAVECYQMALSIKPN---------------FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (689)
Q Consensus 347 ~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 411 (689)
.|++++|+..++++.+..|. ...++..++.++...|++++|++.+++++...|++..++..+|.+
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l 402 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASV 402 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999988763 235778899999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHhhhccCCChHHHHHHHHHHHH
Q 005594 412 YRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 466 (689)
Q Consensus 412 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (689)
+...|++++|++.++++++++|++..+.... ++.++..++.+++....++...
T Consensus 403 ~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~--a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 403 LQARGWPRAAENELKKAEVLEPRNINLEVEQ--AWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHhcCCHHHHHHHHHHHHhhCCCChHHHHHH--HHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998876654 4466666776666665555443
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=100.00 E-value=1.2e-29 Score=282.59 Aligned_cols=381 Identities=15% Similarity=0.070 Sum_probs=320.6
Q ss_pred ccCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 005594 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (689)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (689)
.+..+..+..+|..+...|++++|+..|+++++.+|.++.++..++.++...|++++|+..++++++.+|+++. +..+|
T Consensus 45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la 123 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALA 123 (765)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Confidence 34556678999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCH-----HHHHHHH
Q 005594 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA-----PAYYNLG 198 (689)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~la 198 (689)
.++...|++++|+..++++++..|++... +..++.++...+..++|+..++++.. .|... .....+.
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~P~~~~~-------~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~ 195 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRAPQTQQY-------PTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELV 195 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887 55567777788999999999987765 54421 1122222
Q ss_pred HHHH-----HcCCH---HHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHh
Q 005594 199 VVYS-----ELMQY---DTALGCYEKAALERPMYAE-------AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263 (689)
Q Consensus 199 ~~~~-----~~g~~---~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 263 (689)
.+.. ..+++ ++|++.++++++..|.++. +.......+...|++++|+..|+++++..+..+..
T Consensus 196 r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-- 273 (765)
T PRK10049 196 RLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-- 273 (765)
T ss_pred HhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH--
Confidence 2222 22345 7899999999976443322 22221223467799999999999999886432221
Q ss_pred hHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-------
Q 005594 264 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH------- 332 (689)
Q Consensus 264 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------- 332 (689)
+...++.++...|++++|+..|+++++.+|.+ ......++.++...|++++|+..++++....|.
T Consensus 274 ----a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~ 349 (765)
T PRK10049 274 ----AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGS 349 (765)
T ss_pred ----HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCC
Confidence 11113556666889999999999999888765 456777888899999999999999999998763
Q ss_pred --------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 005594 333 --------CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 404 (689)
Q Consensus 333 --------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 404 (689)
...++..++.++...|++++|++.+++++...|++..++..+|.++...|++++|++.++++++++|++..+
T Consensus 350 ~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l 429 (765)
T PRK10049 350 PTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINL 429 (765)
T ss_pred CCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHH
Confidence 245778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhH
Q 005594 405 YNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (689)
Q Consensus 405 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (689)
++.+|.++..+|++++|...++++++..|+++.+.
T Consensus 430 ~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 430 EVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999999999999999998653
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.98 E-value=6.4e-28 Score=267.99 Aligned_cols=158 Identities=13% Similarity=0.019 Sum_probs=136.6
Q ss_pred ccccCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 005594 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH 121 (689)
Q Consensus 42 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (689)
....+.+..++..|..+...|++++|+..|+++++.+|+++.+++.++.+|...|++++|+..++++++.+|++...+..
T Consensus 38 ~~~~~~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~ 117 (987)
T PRK09782 38 DYRHFVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERS 117 (987)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH
Confidence 44557888999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH---------------------------------HHHhHHHHH
Q 005594 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV---------------------------------LTDLGTSLK 168 (689)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~---------------------------------~~~l~~~~~ 168 (689)
++.+ +++++|+..|+++++.+|++.+....++.. ...+..+|.
T Consensus 118 La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~ 193 (987)
T PRK09782 118 LAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAI 193 (987)
T ss_pred HHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHH
Confidence 8776 999999999999999999999988777765 122367888
Q ss_pred HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 005594 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (689)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 203 (689)
.++++++|+..+.++++..|.+......++.+|..
T Consensus 194 ~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q 228 (987)
T PRK09782 194 YLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLA 228 (987)
T ss_pred HHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 89999999999999888877665555444444443
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.98 E-value=4e-29 Score=258.51 Aligned_cols=395 Identities=19% Similarity=0.252 Sum_probs=330.3
Q ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-HHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005594 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN-VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (689)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (689)
..++.++.+|+.+..+|+|++|..+|.++++.++++ .-.++.+|..++..|+++.|+.+|+++++..|++.+....+|.
T Consensus 305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~ 384 (1018)
T KOG2002|consen 305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGC 384 (1018)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 457789999999999999999999999999999988 7889999999999999999999999999999999999999999
Q ss_pred HHHHcC----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-------------------------------HHhHHHHHH
Q 005594 125 LYKDEG----RLVEAAESYHKALSADPSYKPAAECLAIVL-------------------------------TDLGTSLKL 169 (689)
Q Consensus 125 ~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~~a~~~-------------------------------~~l~~~~~~ 169 (689)
+|...+ ..+.|..+..++++..|.+.+++..++.++ .++|..++.
T Consensus 385 Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~ 464 (1018)
T KOG2002|consen 385 LYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFR 464 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHH
Confidence 998876 678899999999999999988877776543 456777777
Q ss_pred cCChHHHHHHHHHHHhh-----CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005594 170 AGNTQDGIQKYYEALKI-----DPH-----YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (689)
Q Consensus 170 ~~~~~~A~~~~~~al~~-----~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (689)
.|++.+|...|.+++.. +++ +....+++|.++...++++.|.+.|..+++.+|...+++..+|.+....+
T Consensus 465 ~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~ 544 (1018)
T KOG2002|consen 465 LGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKN 544 (1018)
T ss_pred hcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhcc
Confidence 88888888888877765 111 12347788888888888888888888888888888888888887777777
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHh-----
Q 005594 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--HYADAMYNLGVAYGE----- 312 (689)
Q Consensus 240 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~----- 312 (689)
+..+|...++.++..+..++.++..++ ..+.....+..|.+-|+..++... .++.+...||+++++
T Consensus 545 ~~~ea~~~lk~~l~~d~~np~arsl~G-------~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 545 NLYEASLLLKDALNIDSSNPNARSLLG-------NLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred CcHHHHHHHHHHHhcccCCcHHHHHHH-------HHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccc
Confidence 888888888888888777776655444 344445566667666666554432 345667777777654
Q ss_pred -------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 005594 313 -------MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 385 (689)
Q Consensus 313 -------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 385 (689)
.+.+++|++.|.++++.+|.+..+-+.+|.++...|++.+|..+|.+..+.-.+...+|.++|.||..+|+|.
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~ 697 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYR 697 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999999999999999887788899999999999999999
Q ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHhh
Q 005594 386 AAAEMIEKAIAAN--PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 447 (689)
Q Consensus 386 ~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 447 (689)
.|++.|+.+++.. .++..++..||.++...|.+.+|.+...+++.+.|.++....|+.+.+.
T Consensus 698 ~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~k 761 (1018)
T KOG2002|consen 698 LAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLK 761 (1018)
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHH
Confidence 9999999999874 3668999999999999999999999999999999999999998876544
No 18
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.4e-27 Score=247.19 Aligned_cols=386 Identities=21% Similarity=0.249 Sum_probs=331.0
Q ss_pred cCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-HHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 005594 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN-VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (689)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (689)
+.++-.++..|.+.+.+|+|..|+.+|++++..+|.. ++....+|.|+.++|+.+.|+..|+++++++|.+..++..||
T Consensus 161 p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~ 240 (1018)
T KOG2002|consen 161 PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALG 240 (1018)
T ss_pred CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHH
Confidence 4566778889999999999999999999999988864 567788899999999999999999999999999999998888
Q ss_pred HHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCC---CHHHHHHH
Q 005594 124 ILYKDEG---RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH---YAPAYYNL 197 (689)
Q Consensus 124 ~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~l 197 (689)
.+-.... .+..+...+.++...++.++.+ +..++..++..|+++.+..+...++..... .++.++.+
T Consensus 241 ~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~-------l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~ 313 (1018)
T KOG2002|consen 241 EVDLNFNDSDSYKKGVQLLQRAYKENNENPVA-------LNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQL 313 (1018)
T ss_pred HHHHHccchHHHHHHHHHHHHHHhhcCCCcHH-------HHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 8776654 4677888899999999999887 777888888889999999999988877533 35679999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhh
Q 005594 198 GVVYSELMQYDTALGCYEKAALERPMY-AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276 (689)
Q Consensus 198 a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~ 276 (689)
|.+|..+|++++|..+|.++++.++++ .-.++.+|+++...|+++.|+.+|++.++..|++.+....++..|...+
T Consensus 314 gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~--- 390 (1018)
T KOG2002|consen 314 GRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA--- 390 (1018)
T ss_pred HHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh---
Confidence 999999999999999999999999887 7788899999999999999999999999999999888888777776654
Q ss_pred hhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHcCCHH
Q 005594 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-----NPHCAEACNNLGVIYKDRDNLD 351 (689)
Q Consensus 277 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~ 351 (689)
......++|..++.++++..|.+.++|..++.++....-+.. +..|.+++.. .+--++.++++|..++..|+++
T Consensus 391 ~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~ 469 (1018)
T KOG2002|consen 391 KKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIE 469 (1018)
T ss_pred hhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChH
Confidence 234467889999999999999999999999998876665555 8888888854 3445889999999999999999
Q ss_pred HHHHHHHHHHhc-----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 005594 352 KAVECYQMALSI-----KPNF-----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA 421 (689)
Q Consensus 352 ~A~~~~~~al~~-----~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 421 (689)
+|...|.+|+.. +++. ....+++|.++...++++.|.+.|...++.+|...+++..+|......++..+|
T Consensus 470 ~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea 549 (1018)
T KOG2002|consen 470 KALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEA 549 (1018)
T ss_pred HHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHH
Confidence 999999999876 2222 235889999999999999999999999999999999999999888889999999
Q ss_pred HHHHHHHHhcCCCChhhHhh
Q 005594 422 IDAYEQCLKIDPDSRNAGQN 441 (689)
Q Consensus 422 ~~~~~~al~~~p~~~~~~~~ 441 (689)
...++.++..+..++.++.-
T Consensus 550 ~~~lk~~l~~d~~np~arsl 569 (1018)
T KOG2002|consen 550 SLLLKDALNIDSSNPNARSL 569 (1018)
T ss_pred HHHHHHHHhcccCCcHHHHH
Confidence 99999999999999988764
No 19
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.1e-27 Score=231.56 Aligned_cols=389 Identities=21% Similarity=0.229 Sum_probs=332.1
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 005594 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (689)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (689)
..+...|+..+..|+|+.|+.+|.+++.++|.|...+.+...+|..+|+|++|++.-.+..+++|+.+..|..+|..+..
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG 82 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHH---------HHH-cCC-------hHHHHHHHHHHHhh-----
Q 005594 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS---------LKL-AGN-------TQDGIQKYYEALKI----- 186 (689)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~---------~~~-~~~-------~~~A~~~~~~al~~----- 186 (689)
.|+|++|+..|.+.++.+|++......++.+....... +.. .++ .+.+.....+.+..
T Consensus 83 lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred cccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 99999999999999999999988877776655211000 000 000 00000000001100
Q ss_pred ------------------------------------CCC---------------------CHHHHHHHHHHHHHcCCHHH
Q 005594 187 ------------------------------------DPH---------------------YAPAYYNLGVVYSELMQYDT 209 (689)
Q Consensus 187 ------------------------------------~~~---------------------~~~~~~~la~~~~~~g~~~~ 209 (689)
.|. .......+|...+...++..
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 110 02345678999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHH
Q 005594 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289 (689)
Q Consensus 210 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 289 (689)
|++.|.+++.++ .+...+.+.+-+|...|.+.+.+.....+++...........++.++..+|..+...++++.++.+|
T Consensus 243 a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 243 AIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 999999999999 8889999999999999999999999999998887777777788999999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 005594 290 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 369 (689)
Q Consensus 290 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 369 (689)
++++..... ..+.......++++...+...-++|.-..--...|..++..|+|..|+..|.++++.+|+++.
T Consensus 322 ~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~ 393 (539)
T KOG0548|consen 322 QKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR 393 (539)
T ss_pred HHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH
Confidence 998876554 455666777888888888888888888888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHh
Q 005594 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 446 (689)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 446 (689)
.+.+.|.||.++|.+..|+...+.+++++|+...+|..-|.++..+.+|++|.+.|+++++++|++..+...+.-++
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCV 470 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988876654443
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=6.6e-26 Score=252.01 Aligned_cols=358 Identities=13% Similarity=0.051 Sum_probs=210.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCC------
Q 005594 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGR------ 131 (689)
Q Consensus 61 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~------ 131 (689)
.+.+.+|....+...+..|.+...+..++......|++++|...|+.+....++. ......++.+|...+.
T Consensus 355 ~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 355 TRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred cCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 3555555555555555556666666666666666666666666666666542211 1122244444444332
Q ss_pred -------------------HHH---HHHHHHHHHhcCCC--CHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhC
Q 005594 132 -------------------LVE---AAESYHKALSADPS--YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID 187 (689)
Q Consensus 132 -------------------~~~---A~~~~~~al~~~p~--~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 187 (689)
+.+ +...+.+++...|. +..+ +..+|.++.. ++..+|+..+.+++...
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a-------~~~LG~~l~~-~~~~eAi~a~~~Al~~~ 506 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAA-------WNRLAKCYRD-TLPGVALYAWLQAEQRQ 506 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHH-------HHHHHHHHHh-CCcHHHHHHHHHHHHhC
Confidence 111 22222233333333 3332 5555555554 56666666666666666
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHH
Q 005594 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267 (689)
Q Consensus 188 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 267 (689)
|++. ....+|.++...|++++|+..+++++...|.. ..+..+|.++...|++++|+.+++++++..|........
T Consensus 507 Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~--- 581 (987)
T PRK09782 507 PDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWW--- 581 (987)
T ss_pred CchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHH---
Confidence 6543 24445555566666666666666665554432 345566666666666666666666666666554332221
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 005594 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 347 (689)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 347 (689)
++......|++++|+..++++++.+|+ ...+..+|.++.+.|++++|+..|+++++.+|+++.++.++|.++...
T Consensus 582 ----La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~ 656 (987)
T PRK09782 582 ----LHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDS 656 (987)
T ss_pred ----HHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 122222345666666666666666664 666666666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005594 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427 (689)
Q Consensus 348 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (689)
|++++|+..|+++++++|+++.++.++|.++...|++++|+..|+++++++|+++.+....|.+.....+++.|.+.+++
T Consensus 657 G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r 736 (987)
T PRK09782 657 GDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGR 736 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHhcCCCCh
Q 005594 428 CLKIDPDSR 436 (689)
Q Consensus 428 al~~~p~~~ 436 (689)
...++|+..
T Consensus 737 ~~~~~~~~~ 745 (987)
T PRK09782 737 RWTFSFDSS 745 (987)
T ss_pred HhhcCccch
Confidence 666666654
No 21
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=7.3e-27 Score=233.61 Aligned_cols=307 Identities=20% Similarity=0.278 Sum_probs=276.3
Q ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 005594 117 CAHTHCGILYKD--EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 194 (689)
Q Consensus 117 ~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 194 (689)
..+..+|..|.. +-+..+|+..|++.-...++.. .++.++|..|+.+++|++|.++|+.+-+..|-..+..
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~-------wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~m 390 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTG-------WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGM 390 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCch-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccch
Confidence 345555655544 5567899999999555555543 3488899999999999999999999999999877777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhh
Q 005594 195 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 274 (689)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~ 274 (689)
-....+++.+.+--+---+.+..++.+|+.++.|..+|.+|..+++++.|+++|+++++++|.+.. +|..+|.
T Consensus 391 eiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faY-------ayTLlGh 463 (638)
T KOG1126|consen 391 EIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAY-------AYTLLGH 463 (638)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccch-------hhhhcCC
Confidence 777777887777666666677788999999999999999999999999999999999999998754 4555666
Q ss_pred hhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005594 275 KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 354 (689)
Q Consensus 275 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 354 (689)
-+....+++.|...|++++..+|.+..+|+.+|.+|.++++++.|.-.|++|++++|.+......+|.++.+.|+.++|+
T Consensus 464 E~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL 543 (638)
T KOG1126|consen 464 ESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKAL 543 (638)
T ss_pred hhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHH
Confidence 66778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005594 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (689)
Q Consensus 355 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (689)
.+|++|+.++|.++-..+..|.++...+++++|+..+++.-++.|+...+++.+|++|.++|+.+.|+..|.-|+.++|.
T Consensus 544 ~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 544 QLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Chh
Q 005594 435 SRN 437 (689)
Q Consensus 435 ~~~ 437 (689)
-.+
T Consensus 624 g~~ 626 (638)
T KOG1126|consen 624 GAQ 626 (638)
T ss_pred cch
Confidence 655
No 22
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.2e-25 Score=215.65 Aligned_cols=361 Identities=19% Similarity=0.199 Sum_probs=286.8
Q ss_pred HHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005594 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD 162 (689)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~ 162 (689)
..+-..|.-++..|+|++|+++|.+++++.|+.+..+.+++.||...|++++.++...++++++|+...+ ++.
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KA-------l~R 188 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKA-------LLR 188 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHH-------HHH
Confidence 3456678889999999999999999999999999999999999999999999999999999999998777 555
Q ss_pred hHHHHHHcCChHHHHHHH------------------HHHHhh--------------CCCCH-------------------
Q 005594 163 LGTSLKLAGNTQDGIQKY------------------YEALKI--------------DPHYA------------------- 191 (689)
Q Consensus 163 l~~~~~~~~~~~~A~~~~------------------~~al~~--------------~~~~~------------------- 191 (689)
.+..+...|++.+|+.-. ++.++. .|.-+
T Consensus 189 RA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~ 268 (606)
T KOG0547|consen 189 RASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPL 268 (606)
T ss_pred HHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccc
Confidence 555566666666665432 222211 11110
Q ss_pred --------HHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC----CCC---------HHHHHHHHHHHHHcCCHHHHHHH
Q 005594 192 --------PAYYNLGVVYSELM---QYDTALGCYEKAALER----PMY---------AEAYCNMGVIYKNRGDLESAIAC 247 (689)
Q Consensus 192 --------~~~~~la~~~~~~g---~~~~A~~~~~~al~~~----p~~---------~~~~~~la~~~~~~g~~~~A~~~ 247 (689)
++...-+.-+...+ .|.+|...+.+..... ..+ +.++...|..++-.|++-.|...
T Consensus 269 ~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d 348 (606)
T KOG0547|consen 269 FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQED 348 (606)
T ss_pred ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhh
Confidence 11111111111222 5666666666554321 112 56778888888999999999999
Q ss_pred HHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005594 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (689)
Q Consensus 248 ~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 327 (689)
|++++.++|.+... |..++.+|...++.++....|.++..++|+++++|+..|.+++-++++++|+.-|++++
T Consensus 349 ~~~~I~l~~~~~~l-------yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai 421 (606)
T KOG0547|consen 349 FDAAIKLDPAFNSL-------YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAI 421 (606)
T ss_pred HHHHHhcCcccchH-------HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999987754 45555666668899999999999999999999999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------c
Q 005594 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT------Y 401 (689)
Q Consensus 328 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~ 401 (689)
+++|++...+..++.+.++++++++++..|+.+.+..|+.++++...|.++..++++++|++.|.+++++.|. +
T Consensus 422 ~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~ 501 (606)
T KOG0547|consen 422 SLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVN 501 (606)
T ss_pred hcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 5
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHhhhccCCChHHHHH
Q 005594 402 AEAYNNLGVLY-RDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFE 459 (689)
Q Consensus 402 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (689)
+..+...|.+. .-.+++..|.+.+++|+++||....+...+. ..-+..+..+++++
T Consensus 502 ~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tla--q~~lQ~~~i~eAie 558 (606)
T KOG0547|consen 502 AAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLA--QFELQRGKIDEAIE 558 (606)
T ss_pred chhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHH--HHHHHHhhHHHHHH
Confidence 54444444332 2358999999999999999999988876643 22334444444433
No 23
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.3e-25 Score=218.07 Aligned_cols=388 Identities=21% Similarity=0.241 Sum_probs=327.4
Q ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHH------HHcCCCC----
Q 005594 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA------VKLDPQN---- 115 (689)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~p~~---- 115 (689)
.++...+.+|++++-.|+|..|..+...- +.+..+....+..+.|+....++++|...+.+. +..+|.+
T Consensus 47 ~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~ 125 (611)
T KOG1173|consen 47 NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANT 125 (611)
T ss_pred CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhce
Confidence 67888999999999999999998887765 555667888999999999999999999888733 1112211
Q ss_pred ---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH----------------------
Q 005594 116 ---------------ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI---------------------- 158 (689)
Q Consensus 116 ---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~---------------------- 158 (689)
....+.+|.+|....+.++|...|.+++..++...++...+..
T Consensus 126 l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~ 205 (611)
T KOG1173|consen 126 LELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLT 205 (611)
T ss_pred eccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhh
Confidence 2345677888999999999999999999887776555333222
Q ss_pred ----------------------------------------HHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 005594 159 ----------------------------------------VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (689)
Q Consensus 159 ----------------------------------------~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 198 (689)
++...+..++..+++.+..+..+..++.+|-+...+-..-
T Consensus 206 ~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~i 285 (611)
T KOG1173|consen 206 KEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHI 285 (611)
T ss_pred hhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHH
Confidence 1122445566777888888888888888888776665444
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhh
Q 005594 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (689)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (689)
-++.++|+..+-...-.+.++..|+.+-.|+..|..|...|++.+|.++|.++..++|....+|...+.++..
T Consensus 286 a~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~------- 358 (611)
T KOG1173|consen 286 ACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAG------- 358 (611)
T ss_pred HHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhh-------
Confidence 4888888888888888888888999999999999999999999999999999999999998877766665554
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005594 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358 (689)
Q Consensus 279 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 358 (689)
.+..++|+..|..|-++.|..-.....+|.-|...++++.|.++|.+++.+.|.++.++..+|.+.+..+.|.+|..+|+
T Consensus 359 e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~ 438 (611)
T KOG1173|consen 359 EGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQ 438 (611)
T ss_pred cchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHH
Confidence 67999999999999999999888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcC----CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594 359 MALSIK----PN---FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (689)
Q Consensus 359 ~al~~~----p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (689)
+++..- ++ ....+.+||.++.+++++++|+.++++++.+.|.++.++..+|.+|..+|+++.|+++|.++|.+
T Consensus 439 ~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 439 KALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 999432 11 23468999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHhh
Q 005594 432 DPDSRNAGQN 441 (689)
Q Consensus 432 ~p~~~~~~~~ 441 (689)
+|++..+..-
T Consensus 519 ~p~n~~~~~l 528 (611)
T KOG1173|consen 519 KPDNIFISEL 528 (611)
T ss_pred CCccHHHHHH
Confidence 9999665443
No 24
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.3e-25 Score=208.76 Aligned_cols=363 Identities=17% Similarity=0.156 Sum_probs=234.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHH
Q 005594 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP--QNACAHTHCGILYKD 128 (689)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~ 128 (689)
++..|.++.+.|....|++.|..++...|-+..+|..++.+.... +........-| .+...-..++.++..
T Consensus 167 lYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~-------e~~~~l~~~l~~~~h~M~~~F~~~a~~e 239 (559)
T KOG1155|consen 167 LYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDI-------EILSILVVGLPSDMHWMKKFFLKKAYQE 239 (559)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchH-------HHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence 444555555666666666666666555565555555555543221 11112221122 222233344555555
Q ss_pred cCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 005594 129 EGRLVEAAESYHKALSA-DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207 (689)
Q Consensus 129 ~g~~~~A~~~~~~al~~-~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 207 (689)
..+.++++.-++..... .|.+.-. -...|.+...+.++++|+..|+...+.+|-..+-.-...++++-.++-
T Consensus 240 l~q~~e~~~k~e~l~~~gf~~~~~i-------~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSVGFPNSMYI-------KTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHhccCCccHHH-------HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 55666666666666665 4444332 334455555667777777777777777776655555556666655555
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHH
Q 005594 208 DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287 (689)
Q Consensus 208 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 287 (689)
.+-.-+.+.+.+++.-.++....+|+.|...++.++|+.+|+++++++|+...+|..++. -+...++...|++
T Consensus 313 skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGH-------EyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 313 SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGH-------EYVEMKNTHAAIE 385 (559)
T ss_pred HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhH-------HHHHhcccHHHHH
Confidence 554455555666666666677777777777777777777777777777776555444433 3334567777777
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005594 288 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367 (689)
Q Consensus 288 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 367 (689)
.|++|++++|.+-.+|+.+|..|.-++...=|+-+|+++.+..|.+...|..||.+|.+.++.++|+++|.+++.....+
T Consensus 386 sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte 465 (559)
T KOG1155|consen 386 SYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE 465 (559)
T ss_pred HHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005594 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIA-------ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (689)
Q Consensus 368 ~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (689)
..++..+|.+|.++++.++|..+|++.++ ..|+...+...|+..+.+.+++++|..+..+++.-++.
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETE 539 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch
Confidence 77777777777777777777777777776 24445566666777777777777777777776665443
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.96 E-value=4e-24 Score=233.10 Aligned_cols=389 Identities=13% Similarity=0.013 Sum_probs=273.9
Q ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005594 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (689)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (689)
..++..+..+.+.+++|+++.|+..|+++++.+|.++.....++.++...|+.++|+.++++++...|.....+..+|.+
T Consensus 32 ~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~l 111 (822)
T PRK14574 32 AMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARA 111 (822)
T ss_pred cchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 46778899999999999999999999999999999965555888888999999999999999994445555566666889
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 005594 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (689)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 205 (689)
+..+|++++|++.|+++++.+|+++.. +..++..+...++.++|++.++++...+|..... ..++.++...+
T Consensus 112 y~~~gdyd~Aiely~kaL~~dP~n~~~-------l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~ 183 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKDPTNPDL-------ISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATD 183 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHH-------HHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcc
Confidence 999999999999999999999999776 4566777888899999999999999999986554 66677776778
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH------------------------------------
Q 005594 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE------------------------------------ 249 (689)
Q Consensus 206 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~------------------------------------ 249 (689)
+..+|++.++++++.+|++.+.+..+..++...|-...|.+..+
T Consensus 184 ~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r 263 (822)
T PRK14574 184 RNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETER 263 (822)
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 88789999999999999999988888887777766555554433
Q ss_pred ------------HHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhcCCH
Q 005594 250 ------------RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKF 316 (689)
Q Consensus 250 ------------~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~ 316 (689)
..+...+..+........+....-..+...+++.+++..|+...... +--..+....|..|...++.
T Consensus 264 ~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P 343 (822)
T PRK14574 264 FDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLP 343 (822)
T ss_pred HHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCc
Confidence 22321222111111111111122222334556666666666655443 22334556666666677777
Q ss_pred HHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---------------CCHHHHHHHH
Q 005594 317 DMAIVFYELAFHFNP------HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP---------------NFSQSLNNLG 375 (689)
Q Consensus 317 ~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~~~~~la 375 (689)
++|+.+|++++...+ ........|...+...+++++|..++++..+..| +..++...++
T Consensus 344 ~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a 423 (822)
T PRK14574 344 EKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLV 423 (822)
T ss_pred HHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHH
Confidence 777777766665432 2233345566666666677777666666665322 2234555666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhH
Q 005594 376 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (689)
Q Consensus 376 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (689)
.++...|++.+|++.+++.+...|.+..++..+|.++...|++.+|.+.++.++.++|++..+....
T Consensus 424 ~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~ 490 (822)
T PRK14574 424 QSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQ 490 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHH
Confidence 6666667777777777776666676666666777777777777777777766666666666665544
No 26
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.2e-24 Score=204.02 Aligned_cols=374 Identities=19% Similarity=0.185 Sum_probs=274.7
Q ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHH-------------------HHHHHHHH
Q 005594 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGR-------------------LAFDSFSE 107 (689)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~-------------------~A~~~~~~ 107 (689)
.....+.+|..++..+.|+.|.-.++.... ....+..-.+.+..|..+ ..+..+.+
T Consensus 77 ~~~~~y~laks~fd~kEf~Raa~fL~~~~s-----~k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~ 151 (559)
T KOG1155|consen 77 LEKDIYLLAKSYFDCKEFERAAFFLQNCKS-----KKSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNK 151 (559)
T ss_pred hhcchhhhHhhhhhhHHHHHHHHHHHhcch-----HHHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhh
Confidence 345678899999999999999998887644 222222222222222211 12222222
Q ss_pred HHHc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---------------------
Q 005594 108 AVKL----DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD--------------------- 162 (689)
Q Consensus 108 al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~--------------------- 162 (689)
-++. ...++..++..|.++.+.|....|+..+..++...|-+-.+|..+..+...
T Consensus 152 ~le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 152 PLESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKF 231 (559)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHH
Confidence 2221 234577888999999999999999999999999999988887665543221
Q ss_pred -hHHHHHHcCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005594 163 -LGTSLKLAGNTQDGIQKYYEALKI-DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (689)
Q Consensus 163 -l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 240 (689)
++.++....+.++++.-++..... .|.+...-...|.+.+.+.++++|+..|+...+.+|-..+-.-...+++.-.++
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 223333334445555555554444 455555555555555555555555555555555555444444444444444443
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005594 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 320 (689)
Q Consensus 241 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 320 (689)
-.+-.-..+.+..++.-.++ ...-+|+.|...++.++|+.+|+++++++|....+|..+|.-|..+++...|+
T Consensus 312 ~skLs~LA~~v~~idKyR~E-------TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNIDKYRPE-------TCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred hHHHHHHHHHHHHhccCCcc-------ceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHH
Confidence 33322333333333322221 22335666777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005594 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (689)
Q Consensus 321 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (689)
+.|++|++++|.+-.+|+.+|..|.-++...=|+-+|++|++..|+++..|..||.||.+.++.++|+++|.+++.....
T Consensus 385 ~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 385 ESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005594 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (689)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (689)
+..++..||++|.++++.++|..+|++.++..
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999843
No 27
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.95 E-value=8.3e-25 Score=200.68 Aligned_cols=323 Identities=19% Similarity=0.225 Sum_probs=241.1
Q ss_pred cCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005594 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (689)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (689)
..+++..+++|..++..|++..|+..|..+++.+|++..+++..|.+|+.+|+-.-|+..+.+++++.|+...+....|.
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhch
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHH---HHHHH-----HHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q 005594 125 LYKDEGRLVEAAESYHKALSADPSYKPAA---ECLAI-----VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYN 196 (689)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~~a~-----~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 196 (689)
+++++|++++|...|++++..+|++.... ..++. .+......+...|+...|+......+++.|-++..+..
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~ 194 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQA 194 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHH
Confidence 99999999999999999999999654432 22222 23334556677899999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHH---HHH--H
Q 005594 197 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI---ALT--D 271 (689)
Q Consensus 197 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~~--~ 271 (689)
.+.||...|+...|+..++.+-++..++.+.++.++.+++..|+.+.++...+++++++|++...+..+-. +-. .
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~le 274 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLE 274 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999997643321111 000 0
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 005594 272 LGTKVKLEGDINQGVAYYKKALYYNWHYAD----AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 347 (689)
Q Consensus 272 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 347 (689)
-.......+++.++++..++.++.+|..+. ....+..++...+++.+|+....+++.++|++..++...+..|+..
T Consensus 275 s~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~d 354 (504)
T KOG0624|consen 275 SAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGD 354 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhh
Confidence 011122234444444444444444444221 2222333444444444444444444444444444444444444444
Q ss_pred CCHHHHHHHHHHHHhcCCCC
Q 005594 348 DNLDKAVECYQMALSIKPNF 367 (689)
Q Consensus 348 g~~~~A~~~~~~al~~~p~~ 367 (689)
..|+.|+..|++|.+.++++
T Consensus 355 E~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 355 EMYDDAIHDYEKALELNESN 374 (504)
T ss_pred HHHHHHHHHHHHHHhcCccc
Confidence 44444444444444444443
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.95 E-value=2.2e-24 Score=222.31 Aligned_cols=376 Identities=15% Similarity=0.126 Sum_probs=305.8
Q ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005594 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (689)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (689)
.+...++..|+.++..|++++|..++.++++.+|.++.+|+.+|.+|..+|+.+++...+-.|-.++|++.+.|..++..
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCC-----HHHHHHHHHH
Q 005594 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAYYNLGVV 200 (689)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~ 200 (689)
..++|++++|.-+|.++++.+|.+... ....+.++.+.|+...|...|.+++...|.. .......+..
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~p~n~~~-------~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~ 289 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQANPSNWEL-------IYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHY 289 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcchHH-------HHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999776 6667777888899999999999999999832 2233455778
Q ss_pred HHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHH----------------
Q 005594 201 YSELMQYDTALGCYEKAALER--PMYAEAYCNMGVIYKNRGDLESAIACYERCLAV--SPNFEI---------------- 260 (689)
Q Consensus 201 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~~---------------- 260 (689)
+...++-+.|++.++.++... ....+-+..++.++.....++.|.......... .+++..
T Consensus 290 ~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~ 369 (895)
T KOG2076|consen 290 FITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCE 369 (895)
T ss_pred HHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccccc
Confidence 888888899999999999843 234456778899999999999999887766541 111100
Q ss_pred ----HHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-CH
Q 005594 261 ----AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW-HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-CA 334 (689)
Q Consensus 261 ----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~ 334 (689)
....+-.+...++.+.....+..+++..+..--...+ +.++.+..++.++...|++.+|+.++..+....+. +.
T Consensus 370 ~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~ 449 (895)
T KOG2076|consen 370 VGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNA 449 (895)
T ss_pred CCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccch
Confidence 0111111344555555566666666665544333333 35678999999999999999999999999887654 47
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------HHHH
Q 005594 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---------AEAY 405 (689)
Q Consensus 335 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~ 405 (689)
.+|+.+|.+|..+|.+++|+++|++++...|++.++...|+.++.++|+.++|.+.+++...-++.+ ....
T Consensus 450 ~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~ 529 (895)
T KOG2076|consen 450 FVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRIL 529 (895)
T ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999998876333222 3466
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 005594 406 NNLGVLYRDAGSISLAIDAYEQC 428 (689)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~a 428 (689)
.....++...|+.++=+..-...
T Consensus 530 ~~r~d~l~~~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 530 AHRCDILFQVGKREEFINTASTL 552 (895)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHH
Confidence 78888999999988855544433
No 29
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=6.4e-26 Score=226.91 Aligned_cols=295 Identities=19% Similarity=0.216 Sum_probs=224.4
Q ss_pred hCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChH
Q 005594 95 QNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174 (689)
Q Consensus 95 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~ 174 (689)
+-+..+|+..|++.-...++...++..+|..|+.+++|++|.++|+.+-+..|-..+....+..++..+ .+--
T Consensus 332 ~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL-------q~~v 404 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL-------QDEV 404 (638)
T ss_pred HHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH-------HhhH
Confidence 345567777777755666666677777777777777777777777777777776555433333333332 2222
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 254 (689)
Q Consensus 175 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 254 (689)
+--.+.+..++.+|+.++.|..+|+||.-+++++.|+++|+++++++|....+|..+|.-+....++++|..+|++++..
T Consensus 405 ~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 405 ALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 22233345666778888888888888888888888888888888888887888888888888888888888888888888
Q ss_pred CCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 005594 255 SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA 334 (689)
Q Consensus 255 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 334 (689)
+|.+..+|+.++.+|.. +++++.|.-.|++|++++|.+......+|.++.+.|+.++|+.+|++|+.++|.++
T Consensus 485 ~~rhYnAwYGlG~vy~K-------qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~ 557 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLK-------QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP 557 (638)
T ss_pred CchhhHHHHhhhhheec-------cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc
Confidence 88888888888877766 45788888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 005594 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403 (689)
Q Consensus 335 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 403 (689)
-..+..|.++...+++++|+..+++..++-|+...++..+|.+|.+.|+.+.|+..|.-|..++|.-.+
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 888888888888888888888888888888888888888888888888888888888888888886444
No 30
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=2.6e-24 Score=224.39 Aligned_cols=308 Identities=20% Similarity=0.173 Sum_probs=199.9
Q ss_pred HHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005594 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161 (689)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~ 161 (689)
....+.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+..... .
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---~----- 106 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ---R----- 106 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH---H-----
Confidence 34455566667777777777777777777777777777777777777777777777777666532221110 1
Q ss_pred HhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 005594 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241 (689)
Q Consensus 162 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 241 (689)
..++..+|.+|...|++++|+..|+++++..|.+..++..++.++...|++
T Consensus 107 -----------------------------~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~ 157 (389)
T PRK11788 107 -----------------------------LLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDW 157 (389)
T ss_pred -----------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchH
Confidence 123455555555566666666666666555555555666666666666666
Q ss_pred HHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005594 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV 321 (689)
Q Consensus 242 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 321 (689)
++|++.++++++..|..... ..+..+..++..+...+++++|+..++++++..|+...++..+|.++...|++++|++
T Consensus 158 ~~A~~~~~~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 235 (389)
T PRK11788 158 QKAIDVAERLEKLGGDSLRV--EIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIE 235 (389)
T ss_pred HHHHHHHHHHHHhcCCcchH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 66666666665555443211 1222344455555556666667666766666666667777778888888888888888
Q ss_pred HHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005594 322 FYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (689)
Q Consensus 322 ~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (689)
.++++++.+|.+ ..++..++.++...|++++|+..++++++..|+.... ..++.++.+.|++++|+..++++++..|+
T Consensus 236 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~ 314 (389)
T PRK11788 236 ALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPS 314 (389)
T ss_pred HHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcC
Confidence 888888777665 4556777788888888888888888888877766443 77788888888888888888888888887
Q ss_pred cHHHHHHHHHHHHH--cCCHHHHHHHHHHHH
Q 005594 401 YAEAYNNLGVLYRD--AGSISLAIDAYEQCL 429 (689)
Q Consensus 401 ~~~~~~~la~~~~~--~g~~~~A~~~~~~al 429 (689)
+......++..+.. .|+..+|+..+++.+
T Consensus 315 ~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 315 LRGFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred HHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 76555444433322 446777776666555
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.95 E-value=6.6e-25 Score=208.28 Aligned_cols=405 Identities=19% Similarity=0.221 Sum_probs=309.4
Q ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCC-----HHHH
Q 005594 47 EGKDALSYANILRSRNKFVDALALYEIVLEK--DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN-----ACAH 119 (689)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~ 119 (689)
.-..++.+|..|....-+.+|+..|+-+++. .|+......++|.++++..+|.+|+++|+-++..-|.- ...+
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 4556788999999999999999999887763 57777778889999999999999999999999887752 4567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhC----------C-
Q 005594 120 THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID----------P- 188 (689)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----------~- 188 (689)
.++|..+.+.|+|+.|+..|+.+++..|+...+ +++..+++..|+-++-.+.|.+.+.+. +
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~--------~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ 351 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAA--------LNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEK 351 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHhCccHHhh--------hhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCc
Confidence 888888999999999999999999999986553 455666777788888888888887651 0
Q ss_pred CCH-HHHHHHHHH-----HHHcCCHHHHHHHHHHHHHh-----CCC--------------------CHHHHHHHHHHHHH
Q 005594 189 HYA-PAYYNLGVV-----YSELMQYDTALGCYEKAALE-----RPM--------------------YAEAYCNMGVIYKN 237 (689)
Q Consensus 189 ~~~-~~~~~la~~-----~~~~g~~~~A~~~~~~al~~-----~p~--------------------~~~~~~~la~~~~~ 237 (689)
+++ ..+.+-+.- .+...+-..|.+..-.+.++ .|+ -.+.-.+.+--+.+
T Consensus 352 ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk 431 (840)
T KOG2003|consen 352 DDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLK 431 (840)
T ss_pred CCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHh
Confidence 010 111111100 01111112222222222111 111 11223344455555
Q ss_pred cCCHHHHHHHHH-------------------------------------HHHhcCCCcHHHHhhHHHHHHHhhhhhhhcC
Q 005594 238 RGDLESAIACYE-------------------------------------RCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 280 (689)
Q Consensus 238 ~g~~~~A~~~~~-------------------------------------~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 280 (689)
.|+++.|++.++ .++.++.-++ .++.+.|++.+..|
T Consensus 432 ~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~-------~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 432 NGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNA-------AALTNKGNIAFANG 504 (840)
T ss_pred ccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCH-------HHhhcCCceeeecC
Confidence 555555555544 3333333222 23445566777789
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360 (689)
Q Consensus 281 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 360 (689)
++++|.+.|++++..+....++++++|..+..+|+.++|+.+|-+.-.+--++.++++.++.+|..+.+..+|++++.++
T Consensus 505 d~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 99999999999999888888999999999999999999999999988888888999999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHh
Q 005594 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440 (689)
Q Consensus 361 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 440 (689)
..+-|+++.++..||.+|-+.|+-.+|.+++-......|.+.+...+||..|....-+++|+.+|+++--+.|+. ..+
T Consensus 585 ~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~--~kw 662 (840)
T KOG2003|consen 585 NSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ--SKW 662 (840)
T ss_pred cccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH--HHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999974 456
Q ss_pred hHHHHhhhccCCChHHHHHHHHHHHHHH
Q 005594 441 NRLLAMNYINEGHDDKLFEAHRDWGKRF 468 (689)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (689)
.++.+.++-+.|+...+++.+++..++|
T Consensus 663 qlmiasc~rrsgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 7788888888999999888877665554
No 32
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=1e-23 Score=219.83 Aligned_cols=303 Identities=16% Similarity=0.124 Sum_probs=239.0
Q ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCC----HHHHHH
Q 005594 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN----ACAHTH 121 (689)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~ 121 (689)
......+..|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+.. ..++..
T Consensus 33 ~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 112 (389)
T PRK11788 33 NRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQE 112 (389)
T ss_pred hhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 3456677789999999999999999999999999999999999999999999999999999998854332 356788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCH-----HHHHH
Q 005594 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA-----PAYYN 196 (689)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~ 196 (689)
+|.++...|++++|+..|+++++..|.+... +..++.++...|++++|++.++++++..|.+. ..+..
T Consensus 113 La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~-------~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (389)
T PRK11788 113 LGQDYLKAGLLDRAEELFLQLVDEGDFAEGA-------LQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCE 185 (389)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHcCCcchHHH-------HHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 8999999999999999999999887765543 77888888889999999999998888776642 24567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhh
Q 005594 197 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276 (689)
Q Consensus 197 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~ 276 (689)
+|.++...|++++|+..++++++..|+...++..+|.++...|++++|++.++++++..|.+.
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----------------- 248 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL----------------- 248 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH-----------------
Confidence 788888888888888888888888888888888888888888888888888888777655421
Q ss_pred hhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005594 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 356 (689)
Q Consensus 277 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 356 (689)
..++..++.++...|++++|+..++++++..|+... +..++.++.+.|++++|+..
T Consensus 249 -----------------------~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~ 304 (389)
T PRK11788 249 -----------------------SEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQAL 304 (389)
T ss_pred -----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHH
Confidence 123455667777778888888888888887776644 37788888888888888888
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH
Q 005594 357 YQMALSIKPNFSQSLNNLGVVYTV--QGKMDAAAEMIEKAIA 396 (689)
Q Consensus 357 ~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~ 396 (689)
++++++..|++......++..+.. .|+.++|+..+++.++
T Consensus 305 l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 305 LREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 888888888776555444433322 4477777776665543
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.94 E-value=1.1e-23 Score=199.92 Aligned_cols=385 Identities=17% Similarity=0.183 Sum_probs=325.0
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-----CHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005594 50 DALSYANILRSRNKFVDALALYEIVLEKDSG-----NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (689)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (689)
-.+..|++++++.+|.+|+++|+-++..-|. ...++.++|..+.+.|+|+.|+..|+.+++..|+... -+++..
T Consensus 239 lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a-~~nl~i 317 (840)
T KOG2003|consen 239 LKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIA-ALNLII 317 (840)
T ss_pred eeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHh-hhhhhh
Confidence 3456788999999999999999999998775 2457888999999999999999999999999997554 456778
Q ss_pred HHHHcCCHHHHHHHHHHHHhcC----------CCCHHHHHHHHH------------------------------------
Q 005594 125 LYKDEGRLVEAAESYHKALSAD----------PSYKPAAECLAI------------------------------------ 158 (689)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~----------p~~~~~~~~~a~------------------------------------ 158 (689)
|++..|+-++-.+.|.+.+.+- |.+......+..
T Consensus 318 ~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~ 397 (840)
T KOG2003|consen 318 CAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPD 397 (840)
T ss_pred hheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccc
Confidence 8899999999999999998641 111000000000
Q ss_pred -----------------------HHHHhHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHc--CCHHHHHH
Q 005594 159 -----------------------VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-APAYYNLGVVYSEL--MQYDTALG 212 (689)
Q Consensus 159 -----------------------~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~--g~~~~A~~ 212 (689)
+-.+.+..+.+.|+++.|++.+.-.-+.+... ..+-.+|..+++.+ .++.+|.+
T Consensus 398 fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqq 477 (840)
T KOG2003|consen 398 FAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQ 477 (840)
T ss_pred hhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHH
Confidence 01123456778899999988876554444332 33455666666664 47888999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHH
Q 005594 213 CYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292 (689)
Q Consensus 213 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 292 (689)
+...++.++.-++.++.+.|.+.+..|++++|.+.|++++..+.... .+++++|..+...|+.++|+++|-+.
T Consensus 478 yad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~-------ealfniglt~e~~~~ldeald~f~kl 550 (840)
T KOG2003|consen 478 YADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT-------EALFNIGLTAEALGNLDEALDCFLKL 550 (840)
T ss_pred HHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH-------HHHHHhcccHHHhcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998766544 45666777777788999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 005594 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 372 (689)
Q Consensus 293 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 372 (689)
-.+--++.++++.++.+|..+.+..+|++.+.++..+-|+++.++..+|.+|-+.|+-.+|.+++-......|.+.+..-
T Consensus 551 h~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~ie 630 (840)
T KOG2003|consen 551 HAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIE 630 (840)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHH
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhH
Q 005594 373 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (689)
Q Consensus 373 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (689)
.||..|....-+++|+.+|+++--+.|+.......++.|+.+.|+|++|.+.|+..-...|++.+...-+
T Consensus 631 wl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkfl 700 (840)
T KOG2003|consen 631 WLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFL 700 (840)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998876543
No 34
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.94 E-value=2.3e-23 Score=191.33 Aligned_cols=319 Identities=18% Similarity=0.158 Sum_probs=256.1
Q ss_pred CCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005594 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (689)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a 157 (689)
+|.+++-++.+|..++..|++..|+..|..+++.+|++..+++..|.+|+.+|+-.-|+..+.+++++.|+...+
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~A----- 108 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAA----- 108 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHH-----
Confidence 556788899999999999999999999999999999999999999999999999999999999999999997665
Q ss_pred HHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCH---HHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005594 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA---PAYY------------NLGVVYSELMQYDTALGCYEKAALERP 222 (689)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~------------~la~~~~~~g~~~~A~~~~~~al~~~p 222 (689)
....|.++.++|++++|..-|..+++.+|++. +++. .....++..|+...|+....+++++.|
T Consensus 109 --RiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~ 186 (504)
T KOG0624|consen 109 --RIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP 186 (504)
T ss_pred --HHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc
Confidence 66778888999999999999999999998642 2222 233445667899999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHH
Q 005594 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADA 302 (689)
Q Consensus 223 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 302 (689)
.++..+...+.+|...|+...|+..++.+-++..++.+..+.++..++.+ |+.+.++...+++++++|++-..
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v-------gd~~~sL~~iRECLKldpdHK~C 259 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTV-------GDAENSLKEIRECLKLDPDHKLC 259 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhh-------hhHHHHHHHHHHHHccCcchhhH
Confidence 99999999999999999999999999999999999998888887777775 58999999999999999987643
Q ss_pred HHH------------HHHHHHhcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005594 303 MYN------------LGVAYGEMLKFDMAIVFYELAFHFNPHCAE----ACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366 (689)
Q Consensus 303 ~~~------------la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 366 (689)
+-. -+......++|.++++..++.++.+|..+. ....+..|+...+++.+|++.+.+++..+|+
T Consensus 260 f~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~ 339 (504)
T KOG0624|consen 260 FPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD 339 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch
Confidence 321 123334556666677777777776666432 2334556666667777777777777777777
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 005594 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410 (689)
Q Consensus 367 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 410 (689)
+.+++...+.+|.....|+.|+..|+++.+.++++..+...+-.
T Consensus 340 dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~ 383 (504)
T KOG0624|consen 340 DVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLER 383 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 77777777777777777777777777777777766665554433
No 35
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.94 E-value=3e-22 Score=218.45 Aligned_cols=374 Identities=13% Similarity=0.008 Sum_probs=303.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 005594 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR 131 (689)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 131 (689)
..++.++...|+.++|+..+++++...|.....+..+|.++...|++++|++.|+++++.+|+++.++..++..+...++
T Consensus 72 ~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q 151 (822)
T PRK14574 72 DDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGR 151 (822)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC
Confidence 36778888889999999999999944444555555568899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005594 132 LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 211 (689)
Q Consensus 132 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 211 (689)
.++|++.++++...+|.+... ..++.++...++..+|++.++++++.+|++.+++..+..++...|-...|.
T Consensus 152 ~~eAl~~l~~l~~~dp~~~~~--------l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~ 223 (822)
T PRK14574 152 GGVVLKQATELAERDPTVQNY--------MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPAL 223 (822)
T ss_pred HHHHHHHHHHhcccCcchHHH--------HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 999999999999999984432 223444444677777999999999999999998888877777666554444
Q ss_pred HHH------------------------------------------------HHHHHh---CCCC----HHHHHHHHHHHH
Q 005594 212 GCY------------------------------------------------EKAALE---RPMY----AEAYCNMGVIYK 236 (689)
Q Consensus 212 ~~~------------------------------------------------~~al~~---~p~~----~~~~~~la~~~~ 236 (689)
+.. ++.+.. .|.. ..+....-.++.
T Consensus 224 ~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~ 303 (822)
T PRK14574 224 RLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALL 303 (822)
T ss_pred HHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHH
Confidence 433 333332 2221 123334455677
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHH
Q 005594 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW------HYADAMYNLGVAY 310 (689)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~ 310 (689)
..|++.++++.|+.+......-+. .+....|..|...+++++|+.+|++++...+ ........|...+
T Consensus 304 ~r~r~~~vi~~y~~l~~~~~~~P~------y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 304 VRHQTADLIKEYEAMEAEGYKMPD------YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HhhhHHHHHHHHHHhhhcCCCCCH------HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 889999999999988754422111 1233455566668899999999999987653 2333357788899
Q ss_pred HhcCCHHHHHHHHHHHHhhCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005594 311 GEMLKFDMAIVFYELAFHFNP---------------HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 375 (689)
Q Consensus 311 ~~~g~~~~A~~~~~~al~~~p---------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 375 (689)
...+++++|..++++..+..| +..++...++.++...|++.+|++.+++.+...|.+..++..+|
T Consensus 378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A 457 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALA 457 (822)
T ss_pred HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999999988543 33677888999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhH
Q 005594 376 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (689)
Q Consensus 376 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (689)
.++...|.+.+|+..++.+..++|++..+...+|.++..+|++.+|....+++++..|+++...
T Consensus 458 ~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 458 SIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 9999999999999999999999999999999999999999999999999999999999998654
No 36
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.93 E-value=3.4e-22 Score=202.86 Aligned_cols=391 Identities=15% Similarity=0.130 Sum_probs=320.0
Q ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHH
Q 005594 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--PQNACAHTHCG 123 (689)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la 123 (689)
+++..+-.+...+...|+|+.+.+.|++++...-...+.|+.++.++...|.-..|+..+++.+... |+++..+...+
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 3555566677788889999999999999998877788999999999999999999999999999988 77777666655
Q ss_pred -HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHc-----------CChHHHHHHHHHHHhhCCCCH
Q 005594 124 -ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA-----------GNTQDGIQKYYEALKIDPHYA 191 (689)
Q Consensus 124 -~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~-----------~~~~~A~~~~~~al~~~~~~~ 191 (689)
.|....+..++++.+..+++.... ...-...+..+..+|.+|..+ ....++++.++++++.+|.++
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~--~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLG--GQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhh--hhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 455668999999999999998542 222233444556666655432 235689999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHH-
Q 005594 192 PAYYNLGVVYSELMQYDTALGCYEKAALE-RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL- 269 (689)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~- 269 (689)
.+.+.++.-|..+++.+.|....+++++. ..+++.+|..++.++...+++.+|+...+.++...+++.........+-
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL 558 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh
Confidence 99999999999999999999999999999 5577999999999999999999999999999998887432211111110
Q ss_pred -----------------------------------HHhhhhhhhcCCHHHHHHHHHHHHhh--------C-----C----
Q 005594 270 -----------------------------------TDLGTKVKLEGDINQGVAYYKKALYY--------N-----W---- 297 (689)
Q Consensus 270 -----------------------------------~~l~~~~~~~~~~~~A~~~~~~al~~--------~-----~---- 297 (689)
...+.......+..+|++.++++... . |
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~ 638 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTV 638 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccc
Confidence 01111122233444444444444322 0 1
Q ss_pred ----CC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 005594 298 ----HY-----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS 368 (689)
Q Consensus 298 ----~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 368 (689)
.. ...|...+..+...++.++|..++.++-.++|..+..|+..|.++...|+.++|.+.|..++.++|++.
T Consensus 639 ~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv 718 (799)
T KOG4162|consen 639 LPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV 718 (799)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc
Confidence 11 135778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 005594 369 QSLNNLGVVYTVQGKMDAAAE--MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (689)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (689)
.+...+|.++.+.|+..-|.+ .+..+++++|.+.++|+.+|.++..+|+.++|.++|..++++.+.+|.-
T Consensus 719 ~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~ 790 (799)
T KOG4162|consen 719 PSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVL 790 (799)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcc
Confidence 999999999999999888888 9999999999999999999999999999999999999999999988743
No 37
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.93 E-value=1.8e-21 Score=193.25 Aligned_cols=373 Identities=14% Similarity=0.061 Sum_probs=248.0
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 005594 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (689)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (689)
..|+.-|+.+.+.+.++-|...|..+++..|.....|...+..-...|..++-..+|++++...|.....|...+..+..
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWK 596 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHh
Confidence 34666667777777777777777777777777666666666666666666766777777777777666667767777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 005594 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD 208 (689)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 208 (689)
.|+...|...+.++++.+|++.+. +...-.+.....+++.|..+|.++....|. ..+|+.-+.+...+++.+
T Consensus 597 agdv~~ar~il~~af~~~pnseei-------wlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~e 668 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPNSEEI-------WLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVE 668 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCCcHHH-------HHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHH
Confidence 777777777777777777766554 333334445556677777777776665444 456666666666677777
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHH
Q 005594 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 288 (689)
Q Consensus 209 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 288 (689)
+|+++++++++..|+....|..+|+++.++++.+.|...|...++..|.....|..++ .+..+.|+...|...
T Consensus 669 eA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLa-------kleEk~~~~~rAR~i 741 (913)
T KOG0495|consen 669 EALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLA-------KLEEKDGQLVRARSI 741 (913)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHH-------HHHHHhcchhhHHHH
Confidence 7777777777777777777777777777777777777777777777776665444333 333445566677777
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 005594 289 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS 368 (689)
Q Consensus 289 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 368 (689)
++++.-.+|++...|.....+-.+.|+.+.|.....++++..|++...|..-..+.-.-++-..++. |++....++
T Consensus 742 ldrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~D----ALkkce~dp 817 (913)
T KOG0495|consen 742 LDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSID----ALKKCEHDP 817 (913)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHH----HHHhccCCc
Confidence 7777777777777777777777777777777777777777777766666655555544444444333 333445566
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHh
Q 005594 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440 (689)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 440 (689)
.++...|.++....++++|.++|.++++.+|++.++|..+-..+...|.-++-.+.+.++..-.|.+...|.
T Consensus 818 hVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~ 889 (913)
T KOG0495|consen 818 HVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQ 889 (913)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHH
Confidence 667777777777777777777777777777777777777777777777777777777777777776655544
No 38
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.1e-22 Score=196.27 Aligned_cols=352 Identities=18% Similarity=0.231 Sum_probs=294.6
Q ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhC-----------------CHHHHHHHHHHH
Q 005594 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQN-----------------MGRLAFDSFSEA 108 (689)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-----------------~~~~A~~~~~~a 108 (689)
..+...+..|.++....+.++|...|.+++..++...++...+-...+... ...+-++.+-++
T Consensus 139 ~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel 218 (611)
T KOG1173|consen 139 LESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYEL 218 (611)
T ss_pred chhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHh
Confidence 455667888999999999999999999999999988776655543332211 111111111111
Q ss_pred HH----------cCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHc
Q 005594 109 VK----------LDP--------QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170 (689)
Q Consensus 109 l~----------~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~ 170 (689)
.. ..| ++.......+..++..+++.+..+..+..++.+|-+.... -..+| ++...
T Consensus 219 ~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~------~~~ia-~l~el 291 (611)
T KOG1173|consen 219 KLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCL------PLHIA-CLYEL 291 (611)
T ss_pred hhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchH------HHHHH-HHHHh
Confidence 10 112 3567788889999999999999999999999999887762 33444 67777
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005594 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250 (689)
Q Consensus 171 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 250 (689)
|+..+-...-.+.++..|+.+..|+.+|..|...|++.+|.++|.++..++|....+|...|..+...|..++|+..|..
T Consensus 292 ~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~t 371 (611)
T KOG1173|consen 292 GKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFT 371 (611)
T ss_pred cccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHH
Confidence 88888888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 005594 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 330 (689)
Q Consensus 251 al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 330 (689)
|-++.|........+ |.-+...++++.|.++|.+++.+.|.++-.+..+|.+.+..+.|.+|..+|+.++..-
T Consensus 372 Aarl~~G~hlP~LYl-------gmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~i 444 (611)
T KOG1173|consen 372 AARLMPGCHLPSLYL-------GMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVI 444 (611)
T ss_pred HHHhccCCcchHHHH-------HHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHh
Confidence 999998865544433 4445557899999999999999999999999999999999999999999999999542
Q ss_pred C-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 005594 331 P-------HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403 (689)
Q Consensus 331 p-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 403 (689)
+ .....+.++|.++.+++.+++|+.+|++++.+.|.++.++..+|.+|..+|+++.|++.|.+++.+.|++..
T Consensus 445 k~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 445 KSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred hhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence 1 234568999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred HHHHHHHH
Q 005594 404 AYNNLGVL 411 (689)
Q Consensus 404 ~~~~la~~ 411 (689)
+-..|+.+
T Consensus 525 ~~~lL~~a 532 (611)
T KOG1173|consen 525 ISELLKLA 532 (611)
T ss_pred HHHHHHHH
Confidence 66666543
No 39
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.92 E-value=9.7e-21 Score=188.04 Aligned_cols=380 Identities=13% Similarity=0.050 Sum_probs=315.6
Q ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcC---------------------------
Q 005594 60 SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--------------------------- 112 (689)
Q Consensus 60 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------------------- 112 (689)
+..-|+.|...+.++-+.-|.+..+|..-+..-...|+.+.-.++..+.+..-
T Consensus 418 rLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~T 497 (913)
T KOG0495|consen 418 RLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVIT 497 (913)
T ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhh
Confidence 34567778888888877788888888877777777777777666666655320
Q ss_pred ---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHH
Q 005594 113 ---------------PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGI 177 (689)
Q Consensus 113 ---------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~ 177 (689)
.+.-..|..-+..+.+.+-++-|+..|..+++.+|..... +...+..-..-|..++-.
T Consensus 498 cQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~sl-------Wlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 498 CQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSL-------WLRAAMFEKSHGTRESLE 570 (913)
T ss_pred HHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHH-------HHHHHHHHHhcCcHHHHH
Confidence 0112345555666777777888888888888888877665 444455555568888888
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005594 178 QKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257 (689)
Q Consensus 178 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 257 (689)
.++++++...|.....|...+..+...|+...|...+.++++.+|++-++|+....+.....+++.|..+|.++....|.
T Consensus 571 Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT 650 (913)
T KOG0495|consen 571 ALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT 650 (913)
T ss_pred HHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc
Confidence 89999999999988889999999999999999999999999999999999998888999999999999999999887776
Q ss_pred cHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 005594 258 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 337 (689)
Q Consensus 258 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 337 (689)
. .++..-......+++.++|+.+++++++..|.....|..+|.++.++++.+.|...|...++..|.....|
T Consensus 651 e--------Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLW 722 (913)
T KOG0495|consen 651 E--------RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLW 722 (913)
T ss_pred c--------hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHH
Confidence 3 23444444445578999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----------------
Q 005594 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---------------- 401 (689)
Q Consensus 338 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------- 401 (689)
..++.+-.+.|+.-.|...++++.-.+|.+...|.....+-.+.|+.++|...+.+|++..|++
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence 9999999999999999999999999999999999999999999999999999999999887653
Q ss_pred --------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHhhhccCCChHH
Q 005594 402 --------------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 456 (689)
Q Consensus 402 --------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 456 (689)
+.++...|..+....++++|.++|.++++.+|++.+++... ...++..|..++
T Consensus 803 kTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~f--ykfel~hG~eed 869 (913)
T KOG0495|consen 803 KTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWF--YKFELRHGTEED 869 (913)
T ss_pred chHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHH--HHHHHHhCCHHH
Confidence 44667789999999999999999999999999999998763 333445565444
No 40
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.92 E-value=3.8e-21 Score=198.71 Aligned_cols=337 Identities=15% Similarity=0.131 Sum_probs=275.4
Q ss_pred HHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005594 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161 (689)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~ 161 (689)
...++..|..++..|++++|...+.++++++|.++.+|+.+|.+|.++|+.+++...+-.|-.++|++.+. |.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~-------W~ 211 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYEL-------WK 211 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHH-------HH
Confidence 45677788889999999999999999999999999999999999999999999999999999999999877 66
Q ss_pred HhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHH
Q 005594 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AEAYCNMGVIYK 236 (689)
Q Consensus 162 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~ 236 (689)
.++....++|++.+|.-+|.++++.+|.+....+..+.+|.+.|+...|...|.+++...|.. -......+..+.
T Consensus 212 ~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 212 RLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence 777777888999999999999999999999999999999999999999999999999999832 223345577788
Q ss_pred HcCCHHHHHHHHHHHHhcCCC--cHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhh--CCC--------------
Q 005594 237 NRGDLESAIACYERCLAVSPN--FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY--NWH-------------- 298 (689)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~-------------- 298 (689)
..++-+.|++.++.++....+ ..+... .++.++.+...++.+.......... .++
T Consensus 292 ~~~~~e~a~~~le~~~s~~~~~~~~ed~n-------i~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~ 364 (895)
T KOG2076|consen 292 THNERERAAKALEGALSKEKDEASLEDLN-------ILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEP 364 (895)
T ss_pred HhhHHHHHHHHHHHHHhhccccccccHHH-------HHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccc
Confidence 888889999999999883222 112222 2333444456777777666555431 000
Q ss_pred ------------CHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005594 299 ------------YADA-MYNLGVAYGEMLKFDMAIVFYELAFHFNP-HCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364 (689)
Q Consensus 299 ------------~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 364 (689)
+..+ ...++.+..+.++..+++..+..--...+ +.++.+..++..+...|++.+|+.+|..+....
T Consensus 365 ~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~ 444 (895)
T KOG2076|consen 365 NALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE 444 (895)
T ss_pred cccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc
Confidence 1122 55556666666666666665544333323 458899999999999999999999999998876
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005594 365 PN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (689)
Q Consensus 365 p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (689)
+. +..+|+.+|.||..+|.+++|+++|++++.+.|++.++...|+.++..+|+.++|.+.+++...-+
T Consensus 445 ~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 445 GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 54 467999999999999999999999999999999999999999999999999999999999887433
No 41
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5.9e-21 Score=179.82 Aligned_cols=385 Identities=14% Similarity=0.101 Sum_probs=318.2
Q ss_pred ccccCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcC---------
Q 005594 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--------- 112 (689)
Q Consensus 42 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------- 112 (689)
.....+.+.....+.++...++-+.|+....++.... ..+.....++..+-.-++-.++.-.+...+...
T Consensus 91 ~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~-r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ 169 (564)
T KOG1174|consen 91 YPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL-RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEA 169 (564)
T ss_pred CCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc-cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHH
Confidence 3444678888999999999999999999877654322 234555556665555555445444444444332
Q ss_pred ----------------------CCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHH
Q 005594 113 ----------------------PQNACAH---THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167 (689)
Q Consensus 113 ----------------------p~~~~~~---~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~ 167 (689)
|..+..+ ...+.++....-+..+..++-.-....|++... +..+|.++
T Consensus 170 ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhL-------l~~lak~~ 242 (564)
T KOG1174|consen 170 LLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHL-------MMALGKCL 242 (564)
T ss_pred HHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHH-------HHHHhhhh
Confidence 2222222 223444444445555555666666677777665 78889999
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005594 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 247 (689)
Q Consensus 168 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 247 (689)
+..|++.+|+..|+++.-++|......-..|.++...|++++-.......+........-|+--+...+..++++.|+.+
T Consensus 243 ~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~ 322 (564)
T KOG1174|consen 243 YYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNF 322 (564)
T ss_pred hhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998888888899999999999999999999
Q ss_pred HHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005594 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (689)
Q Consensus 248 ~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 327 (689)
-+++++.+|.+..++...+.++.. .++.++|+-.|+.+..+.|-..+.|..+..+|...|++.+|...-+.++
T Consensus 323 ~eK~I~~~~r~~~alilKG~lL~~-------~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~ 395 (564)
T KOG1174|consen 323 VEKCIDSEPRNHEALILKGRLLIA-------LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTI 395 (564)
T ss_pred HHHHhccCcccchHHHhccHHHHh-------ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 999999999998877666665555 5799999999999999999999999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 005594 328 HFNPHCAEACNNLG-VIYK-DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405 (689)
Q Consensus 328 ~~~p~~~~~~~~la-~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 405 (689)
+..|.++..+..+| .++. .-.--++|.++++++++++|....+-..++.++...|++++++..+++.+...|+ ...+
T Consensus 396 ~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH 474 (564)
T KOG1174|consen 396 RLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLH 474 (564)
T ss_pred HHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHH
Confidence 99999999999997 4443 3345689999999999999999999999999999999999999999999999887 5788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhH
Q 005594 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (689)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (689)
..||.++...+.+++|.++|..|+.++|++..+...+
T Consensus 475 ~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 475 NHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 9999999999999999999999999999998776654
No 42
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.5e-21 Score=190.93 Aligned_cols=361 Identities=19% Similarity=0.186 Sum_probs=295.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 005594 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG 130 (689)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 130 (689)
+-+....+...|+|++|++--.+.++++|+.+..|..+|..++-+|+|++|+..|.+.|+.+|+|...+..++.++....
T Consensus 39 ySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~ 118 (539)
T KOG0548|consen 39 YSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDY 118 (539)
T ss_pred hcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHH
Confidence 44566778899999999999999999999999999999999999999999999999999999999998888887763220
Q ss_pred ---------------------CHHHHHHHHHHHH---hcCCCCHHH----------------------------------
Q 005594 131 ---------------------RLVEAAESYHKAL---SADPSYKPA---------------------------------- 152 (689)
Q Consensus 131 ---------------------~~~~A~~~~~~al---~~~p~~~~~---------------------------------- 152 (689)
++-.....|.+.+ ..+|.+...
T Consensus 119 ~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~ 198 (539)
T KOG0548|consen 119 AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMA 198 (539)
T ss_pred HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCC
Confidence 0001111122222 112211000
Q ss_pred ---------------------HHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005594 153 ---------------------AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 211 (689)
Q Consensus 153 ---------------------~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 211 (689)
....+.-...+|...+...++..|++.|..++.++ .+...+.+.+-+|+..|.+.+.+
T Consensus 199 ~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~ 277 (539)
T KOG0548|consen 199 EPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECI 277 (539)
T ss_pred CcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhh
Confidence 11123345668999999999999999999999999 88899999999999999999999
Q ss_pred HHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHH
Q 005594 212 GCYEKAALERPMY-------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (689)
Q Consensus 212 ~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (689)
....++++..... ..+...+|..+...++++.|+.+|++++..... .++.......++
T Consensus 278 ~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt---------------~~~ls~lk~~Ek 342 (539)
T KOG0548|consen 278 ELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT---------------PDLLSKLKEAEK 342 (539)
T ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC---------------HHHHHHHHHHHH
Confidence 9999988765432 234445677888889999999999998865544 122223456788
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005594 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364 (689)
Q Consensus 285 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 364 (689)
++...+...-.+|.-.......|..++..|+|..|+..|.+++..+|+++..|.+.|.+|.++|++..|+...+++++++
T Consensus 343 ~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~ 422 (539)
T KOG0548|consen 343 ALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD 422 (539)
T ss_pred HHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 88888888888888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005594 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427 (689)
Q Consensus 365 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (689)
|+....|...|.++..+.+|++|++.|+++++.+|++.++.-.+.++...+.......+.+++
T Consensus 423 p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 423 PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 999999999999999999999999999999999999999999999998876444445555555
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.89 E-value=8.1e-20 Score=189.41 Aligned_cols=301 Identities=12% Similarity=0.003 Sum_probs=233.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCH-HHHHHHH
Q 005594 120 THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA-PAYYNLG 198 (689)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~la 198 (689)
...|.+....|+++.|.+.+.++.+..|+.... +...|......|++++|..++.++.+..|+.. .+....+
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~-------~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a 160 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLN-------LIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIART 160 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHH
Confidence 455667777888888888888887777765443 44556777777888888888888887777764 4555668
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhh
Q 005594 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (689)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (689)
.++...|++++|...+++..+..|+++.++..++.++...|++++|.+.+.+..+....++.....+.. ....+ ...
T Consensus 161 ~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~-~a~~~--~l~ 237 (409)
T TIGR00540 161 RILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQ-KAEIG--LLD 237 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH-HHHHH--HHH
Confidence 888888888888888888888888888888888888888888888888888888764443322211110 11111 111
Q ss_pred cCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH--HHHHHHHHHcCCHHH
Q 005594 279 EGDINQGVAYYKKALYYNW----HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC--NNLGVIYKDRDNLDK 352 (689)
Q Consensus 279 ~~~~~~A~~~~~~al~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~g~~~~ 352 (689)
.+..+++.+.+.++.+..| +++..+..++..+...|++++|.+.++++++..|++.... ..........++.++
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHH
Confidence 2333445556677777666 5899999999999999999999999999999999987532 233333445688999
Q ss_pred HHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594 353 AVECYQMALSIKPNFS--QSLNNLGVVYTVQGKMDAAAEMIE--KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (689)
Q Consensus 353 A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (689)
+++.++++++..|+++ ..+..+|+++.+.|++++|.++|+ ++++..|+... +..+|.++.++|+.++|.++|+++
T Consensus 318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999 889999999999999999999999 67888898655 559999999999999999999998
Q ss_pred Hhc
Q 005594 429 LKI 431 (689)
Q Consensus 429 l~~ 431 (689)
+..
T Consensus 397 l~~ 399 (409)
T TIGR00540 397 LGL 399 (409)
T ss_pred HHH
Confidence 764
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.89 E-value=1.3e-19 Score=187.99 Aligned_cols=302 Identities=12% Similarity=0.009 Sum_probs=189.2
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCH-HHHHHHHHHH
Q 005594 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA-CAHTHCGILY 126 (689)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~ 126 (689)
+...+..|...+..|+++.|.+.+.++.+..|+....+...|.++..+|++++|.+++.++.+..|++. .+....+.++
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence 445566777777777777777777777777776666777777777777777777777777777777664 4555567777
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH----HHHHHHH
Q 005594 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY----NLGVVYS 202 (689)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~----~la~~~~ 202 (689)
...|++++|...++++++..|+++.+ +..++.++...|++++|++.+.+..+....++.... ....-+.
T Consensus 164 l~~~~~~~Al~~l~~l~~~~P~~~~~-------l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l 236 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMAPRHKEV-------LKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLL 236 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777665 555666666777777777777777766443333221 1112223
Q ss_pred HcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhh
Q 005594 203 ELMQYDTALGCYEKAALERP----MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (689)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (689)
..+..+++.+.+.++.+..| +++..+..++..+...|++++|.+.++++++..|++......
T Consensus 237 ~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-------------- 302 (409)
T TIGR00540 237 DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-------------- 302 (409)
T ss_pred HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH--------------
Confidence 33344444556666666655 467777777777777777777777777777777765421100
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHHH
Q 005594 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA--EACNNLGVIYKDRDNLDKAVEC 356 (689)
Q Consensus 279 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~ 356 (689)
..........++.+.+++.++++++.+|+++ ..+..+|.++.+.|++++|.++
T Consensus 303 -------------------------~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~ 357 (409)
T TIGR00540 303 -------------------------LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADA 357 (409)
T ss_pred -------------------------HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHH
Confidence 1111111222344555666666666666666 5556666666666666666666
Q ss_pred HH--HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005594 357 YQ--MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396 (689)
Q Consensus 357 ~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 396 (689)
|+ ++++..|+... +..+|.++.+.|+.++|.+++++++.
T Consensus 358 le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 358 FKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66 35555554433 33666666666666666666666554
No 45
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.89 E-value=7.4e-18 Score=189.45 Aligned_cols=367 Identities=14% Similarity=0.070 Sum_probs=260.1
Q ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--CCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005594 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDS--GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (689)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (689)
+...++..-..+.+.|++++|+++|+++.+.+. .+...+..+...+...|..++|...++.... | +...+..+-.
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~ 445 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMS 445 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHH
Confidence 455677777788899999999999999887653 2333444455566777888888887776543 3 4566777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHH
Q 005594 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVYSE 203 (689)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~ 203 (689)
.+.+.|++++|...++++.+....... .++..+...+.+.|+.++|.+.|+++.+.... +...|..+...|.+
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~------~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADC------KLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 778888888888888887775433211 12556666777778888888888887765432 57777888888888
Q ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCcHHHHhhHHHHHHHhhhhhhh
Q 005594 204 LMQYDTALGCYEKAALER-PMYAEAYCNMGVIYKNRGDLESAIACYERCLAV----SPNFEIAKNNMAIALTDLGTKVKL 278 (689)
Q Consensus 204 ~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~l~~~~~~ 278 (689)
.|++++|++.|+++.+.. ..+...|..+...+.+.|++++|.+.++++... .|+. . ++..+...+.+
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~-v-------TynaLI~ay~k 591 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH-I-------TVGALMKACAN 591 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH-H-------HHHHHHHHHHH
Confidence 888888888888776543 123667778888888888888888888877652 3432 1 23333444555
Q ss_pred cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005594 279 EGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVEC 356 (689)
Q Consensus 279 ~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~ 356 (689)
.|++++|.++|+++.+.. +.+...|..+...|.+.|++++|+.+|+++.+.. ..+...|..+...+.+.|++++|.++
T Consensus 592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l 671 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 678888888888877765 3456677777888888888888888888777652 22356777777778888888888888
Q ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594 357 YQMALSIK-PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (689)
Q Consensus 357 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (689)
++++.+.. +.+..++..+...|.+.|++++|.+.|++..+. .| +...|..+...|.+.|++++|.+.|++..+.
T Consensus 672 ~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 88777653 334667777788888888888888888777653 34 3566777778888888888888888876543
No 46
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.88 E-value=2.3e-20 Score=193.70 Aligned_cols=229 Identities=21% Similarity=0.219 Sum_probs=203.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005594 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH 140 (689)
Q Consensus 61 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 140 (689)
+++...|+..|-+++++++.-+.++..+|..|....+...|.++|.++.++++.+..+....+..|....+++.|....-
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999999866
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005594 141 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220 (689)
Q Consensus 141 ~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 220 (689)
.+-+..|..... ..+...|..+...++...|+..|+.++..+|.+...|..+|.+|...|++..|++.|.++..+
T Consensus 551 ~~~qka~a~~~k-----~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 551 RAAQKAPAFACK-----ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred HHhhhchHHHHH-----hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 665555543222 225568899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHh
Q 005594 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294 (689)
Q Consensus 221 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 294 (689)
+|.+....+..+.+....|+|.+|+..+...+............++.++.+.+..+...|-..+|..++++.++
T Consensus 626 rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie 699 (1238)
T KOG1127|consen 626 RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIE 699 (1238)
T ss_pred CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999888777778888888888888777777776666666666554
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.88 E-value=1.4e-22 Score=199.85 Aligned_cols=262 Identities=21% Similarity=0.197 Sum_probs=122.6
Q ss_pred HHhHHHHHHcCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005594 161 TDLGTSLKLAGNTQDGIQKYYEALKI--DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 238 (689)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 238 (689)
..++.++...|++++|++.+.+.+.. .|++...|..+|.+....+++++|+..|++++..++.++..+..++.+ ...
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 35688888999999999999766544 488899999999999999999999999999999999988888888888 799
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHhcCCH
Q 005594 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--WHYADAMYNLGVAYGEMLKF 316 (689)
Q Consensus 239 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~ 316 (689)
+++++|+.+++++.+..++ +..+. ....++...++++++...++++.... +.++..+..+|.++.+.|+.
T Consensus 91 ~~~~~A~~~~~~~~~~~~~-~~~l~-------~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~ 162 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGD-PRYLL-------SALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP 162 (280)
T ss_dssp -----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH
T ss_pred ccccccccccccccccccc-cchhh-------HHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 9999999999998876644 22222 23334455789999999999977654 67888999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005594 317 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396 (689)
Q Consensus 317 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 396 (689)
++|+..|+++++.+|++..+...++.++...|+++++.+.++...+..|+++..+..+|.++..+|++++|+.+++++++
T Consensus 163 ~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 163 DKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999888899999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594 397 ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (689)
Q Consensus 397 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (689)
.+|+++.++..+|.++...|+.++|..+++++++.
T Consensus 243 ~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 243 LNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HSTT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999998764
No 48
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.88 E-value=1.7e-18 Score=172.83 Aligned_cols=376 Identities=20% Similarity=0.241 Sum_probs=269.1
Q ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 005594 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (689)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (689)
....++..+...+..++|.+.++..+++++..|++++.+...|..+..+|+.++|......+++.++.+...|..+|.++
T Consensus 6 KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 6 KENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 005594 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (689)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 206 (689)
....+|++|+++|+.|+.+.|+|... +..++....+.++++.....-.+.++..|..-..|...+..+...|+
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~~dN~qi-------lrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~ 158 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIEKDNLQI-------LRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE 158 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcHHH-------HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999876 77777777888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC---CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhh
Q 005594 207 YDTALGCYEKAALER---PM-----YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (689)
Q Consensus 207 ~~~A~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (689)
+..|...++...+.. |. ..........+....|..++|++.+..--...-+ . -......+.++..
T Consensus 159 y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D------k-la~~e~ka~l~~k 231 (700)
T KOG1156|consen 159 YKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD------K-LAFEETKADLLMK 231 (700)
T ss_pred HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH------H-HHHhhhHHHHHHH
Confidence 999999888876654 32 2345555667777788888877766553221111 1 1123334566666
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhhCCCC------------------------
Q 005594 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI-VFYELAFHFNPHC------------------------ 333 (689)
Q Consensus 279 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~------------------------ 333 (689)
.+++++|...|...+..+|++...+..+-.++..-.+--+++ ..|...-+..|..
T Consensus 232 l~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL 311 (700)
T KOG1156|consen 232 LGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYL 311 (700)
T ss_pred HhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHH
Confidence 789999999999999999998887777666665333333333 3444333322211
Q ss_pred --------HHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcC------------CCC--HHHHHHHHHHHHHcCCHHHHH
Q 005594 334 --------AEACNNLGVIYKDRDN---LDKAVECYQMALSIK------------PNF--SQSLNNLGVVYTVQGKMDAAA 388 (689)
Q Consensus 334 --------~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~------------p~~--~~~~~~la~~~~~~g~~~~A~ 388 (689)
+.+...+-.+|..-.. .++-+..|...+.-. |.. ...++.++.-+...|+++.|.
T Consensus 312 ~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~ 391 (700)
T KOG1156|consen 312 RPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVAL 391 (700)
T ss_pred HHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHH
Confidence 0000011111100000 001111111111110 111 123455666666777777777
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 005594 389 EMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (689)
Q Consensus 389 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (689)
.+++.|+...|...+.+...|+++...|+.++|..++.++.++|-.|.
T Consensus 392 ~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR 439 (700)
T KOG1156|consen 392 EYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADR 439 (700)
T ss_pred HHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhH
Confidence 777777777777777777777777777777777777777777765543
No 49
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.88 E-value=6.9e-20 Score=167.52 Aligned_cols=382 Identities=18% Similarity=0.145 Sum_probs=292.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhC--------CHHHHHHHHHH-HHHcC--CCC----
Q 005594 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQN--------MGRLAFDSFSE-AVKLD--PQN---- 115 (689)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~-al~~~--p~~---- 115 (689)
-+-+|..+++...|+...+++...++..|++..+|.....++...- +-.+|...++. .+... |..
T Consensus 7 ~~~~a~s~~rrr~~~~ca~lc~~~l~~~~~~q~~W~LKmraLt~~vYvDeld~dd~G~Ae~~ld~n~IA~~aRPGtS~k~ 86 (478)
T KOG1129|consen 7 DYFRAVSLYRRRSYERCAELCNALLQAGHDMEGVWQLKMRALTQRVYVDELDEDDGGEAEEELDFNRIATAARPGTSIKT 86 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHhhheehhhccccccchHHHHhhhhhhccCCCCCCcccC
Confidence 3557889999999999999999999999999999999888875542 22345554432 12111 100
Q ss_pred ---------HH-----------HHHHHHHH-HHHcCCHHHHHHHH--------------------------------HHH
Q 005594 116 ---------AC-----------AHTHCGIL-YKDEGRLVEAAESY--------------------------------HKA 142 (689)
Q Consensus 116 ---------~~-----------~~~~la~~-~~~~g~~~~A~~~~--------------------------------~~a 142 (689)
.. +-...... -.+-|..+.|+..- -.+
T Consensus 87 p~t~~~g~sq~~rp~t~aGrpv~g~~rp~~~S~rpGsm~qA~rt~rta~tar~~~S~sgr~~RlgtaSmaa~~dG~f~nl 166 (478)
T KOG1129|consen 87 PFTPRPGTSQRARPATSAGRPVAGSSRPRLNSSRPGSMAQARRTTRTARTARSLGSRSGRASRLGTASMAAFNDGKFYNL 166 (478)
T ss_pred CCCCCCCCchhhcchhhcCCCCccccCccccCCCCccHHhhccCccccccccccccccchhhhhhhhhhhccCCcceeeh
Confidence 00 00000000 01112222222111 111
Q ss_pred HhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhC---CC-------CHHHHHHHHHHHHHcCCHHHHHH
Q 005594 143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID---PH-------YAPAYYNLGVVYSELMQYDTALG 212 (689)
Q Consensus 143 l~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~-------~~~~~~~la~~~~~~g~~~~A~~ 212 (689)
-.++|........+...++. .+++..++...|-......++.+ |. +......+|.||+.+|.+.+|.+
T Consensus 167 sRLN~tkYa~~p~l~kaLFe--y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~Aek 244 (478)
T KOG1129|consen 167 SRLNPTKYAERPTLVKALFE--YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEK 244 (478)
T ss_pred hhcCchhhccChHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHH
Confidence 22233222222222333332 23455677777776666555442 11 22334579999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHH
Q 005594 213 CYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292 (689)
Q Consensus 213 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 292 (689)
.++.+++..|. ++.+..++.+|.+..+...|+..+.+.++..|.+....... ++++...++.++|.++|+.+
T Consensus 245 qlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~-------ARi~eam~~~~~a~~lYk~v 316 (478)
T KOG1129|consen 245 QLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQ-------ARIHEAMEQQEDALQLYKLV 316 (478)
T ss_pred HHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhh-------HHHHHHHHhHHHHHHHHHHH
Confidence 99999998775 88999999999999999999999999999999987655444 44555567999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHH
Q 005594 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN---FSQ 369 (689)
Q Consensus 293 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~ 369 (689)
++.+|.+.++...+|.-|+..++.+-|+.+|++.+++.-.+++.+.++|.+++..++++-++..|++++....+ ..+
T Consensus 317 lk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaD 396 (478)
T KOG1129|consen 317 LKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAAD 396 (478)
T ss_pred HhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987432 367
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhH
Q 005594 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (689)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (689)
+|+++|.+....|++.-|..+|+-++..++++.+++.+||.+-.+.|+.++|..++..+-.+.|+-.+...|+
T Consensus 397 vWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl 469 (478)
T KOG1129|consen 397 VWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNL 469 (478)
T ss_pred hhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccce
Confidence 9999999999999999999999999999999999999999999999999999999999999999988877764
No 50
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.88 E-value=5.8e-19 Score=181.95 Aligned_cols=303 Identities=11% Similarity=0.002 Sum_probs=233.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHH-HHHHH
Q 005594 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP-AYYNL 197 (689)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~l 197 (689)
.+..|......|++++|.+...+.-+..+. +.. .+...+......|+++.|..++.++.+.+|+... .....
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l------~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~ 159 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVV------NYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITR 159 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHH------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 345566667788888888777765544222 221 1333455557888888888888888888887643 33345
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhh-HHHHHHHhhhhh
Q 005594 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN-MAIALTDLGTKV 276 (689)
Q Consensus 198 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~l~~~~ 276 (689)
+.++...|++++|+..++++.+..|+++.++..++.+|...|++++|++.+.+..+....++..... ...++..+....
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999999999998899999999999999998888888776654433221 112222222222
Q ss_pred hhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005594 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 356 (689)
Q Consensus 277 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 356 (689)
....+.+...+.++......|+++.+...++..+...|+.++|...++++++. +.++......+.+ ..++.+++++.
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~ 316 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKV 316 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHH
Confidence 22344555566666665667889999999999999999999999999999994 4456555555544 44999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005594 357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (689)
Q Consensus 357 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (689)
+++.++.+|+++..+..+|.++...|++++|.++|+++++..|++. .+..++.++.++|+.++|.++|++++.+.
T Consensus 317 ~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 317 LRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999954 46689999999999999999999998864
No 51
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.88 E-value=4.8e-19 Score=180.22 Aligned_cols=349 Identities=16% Similarity=0.091 Sum_probs=291.8
Q ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHH-HHHhCCHHHHHHHHHHHHHcCC-----CCHHH
Q 005594 47 EGKDALSYANILRSRNKFVDALALYEIVLEKD--SGNVEAHIGKGIC-LQMQNMGRLAFDSFSEAVKLDP-----QNACA 118 (689)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p-----~~~~~ 118 (689)
..+.|..++-.+...|.-..|+.++++.+... |.++..+...+.. ....+.+++++.+..+++.... -.+..
T Consensus 356 ~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~ 435 (799)
T KOG4162|consen 356 EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRG 435 (799)
T ss_pred hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhH
Confidence 45778999999999999999999999999988 7777666655554 5567999999999999998431 23567
Q ss_pred HHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhh-
Q 005594 119 HTHCGILYKDEG-----------RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI- 186 (689)
Q Consensus 119 ~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~- 186 (689)
+..+|.+|..+- ...+++..++++++.+|.|+.+ .+.++.-|..+++.+.|+....+++++
T Consensus 436 ~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~-------if~lalq~A~~R~l~sAl~~~~eaL~l~ 508 (799)
T KOG4162|consen 436 YLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV-------IFYLALQYAEQRQLTSALDYAREALALN 508 (799)
T ss_pred HHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH-------HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 778887776432 3578899999999999999876 777888888899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------
Q 005594 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS----------- 255 (689)
Q Consensus 187 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----------- 255 (689)
..+++.+|..++.++...+++.+|+...+.+++..++|.........+-...++.++|+..+...+...
T Consensus 509 ~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~ 588 (799)
T KOG4162|consen 509 RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLD 588 (799)
T ss_pred CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhh
Confidence 556799999999999999999999999999999888866555555555555566666555544433221
Q ss_pred ---------------------------------------------------CCcHHHHhhHHHHHHHhhhhhhhcCCHHH
Q 005594 256 ---------------------------------------------------PNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (689)
Q Consensus 256 ---------------------------------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (689)
|.....+...-..+...+..+...++.++
T Consensus 589 ~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~ 668 (799)
T KOG4162|consen 589 EGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDE 668 (799)
T ss_pred hhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchH
Confidence 11112233334445566777778889999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHh
Q 005594 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE--CYQMALS 362 (689)
Q Consensus 285 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~ 362 (689)
|..++.++-.++|.....++..|..+...|+..+|.+.|..++.++|+++.....+|.++.+.|+..-|.. .+..+++
T Consensus 669 a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr 748 (799)
T KOG4162|consen 669 ARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR 748 (799)
T ss_pred HHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888 9999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 005594 363 IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402 (689)
Q Consensus 363 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 402 (689)
++|.++++|+.+|.++.++|+.++|.++|+.++++.+.+|
T Consensus 749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 9999999999999999999999999999999999987664
No 52
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=6.1e-19 Score=166.39 Aligned_cols=311 Identities=14% Similarity=0.108 Sum_probs=270.7
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHH
Q 005594 88 KGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167 (689)
Q Consensus 88 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~ 167 (689)
++.++.....+..+..++-.-...-|+|...+..+|.+++..|++++|+..|+++..++|.+... .-..|..+
T Consensus 204 ~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~-------MD~Ya~LL 276 (564)
T KOG1174|consen 204 LAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEA-------MDLYAVLL 276 (564)
T ss_pred HHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhh-------HHHHHHHH
Confidence 44444444455556666666677789999999999999999999999999999999999998776 45566777
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005594 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 247 (689)
Q Consensus 168 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 247 (689)
...|++++-.......+..+.....-|+--+...+..+++..|+.+-++++..+|.+..++...|.++...++.++|+-.
T Consensus 277 ~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~Ia 356 (564)
T KOG1174|consen 277 GQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIA 356 (564)
T ss_pred HhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHH
Confidence 78899999999988999888888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHH
Q 005594 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG-VAYG-EMLKFDMAIVFYEL 325 (689)
Q Consensus 248 ~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la-~~~~-~~g~~~~A~~~~~~ 325 (689)
|+.+..+.|.....+..+. ..|...|.+.+|....+.++...|.++.++..+| .++. .-.--++|.+++++
T Consensus 357 FR~Aq~Lap~rL~~Y~GL~-------hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek 429 (564)
T KOG1174|consen 357 FRTAQMLAPYRLEIYRGLF-------HSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEK 429 (564)
T ss_pred HHHHHhcchhhHHHHHHHH-------HHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHh
Confidence 9999999998766555444 4445578999999999999999999999999886 4443 34456899999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 005594 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405 (689)
Q Consensus 326 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 405 (689)
++++.|....+-..++.++...|.++.++..+++.+...|+ ...+..||.++...+.+.+|+++|..++.++|++..+.
T Consensus 430 ~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 430 SLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred hhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 99999999999999999999999999999999999998876 46788999999999999999999999999999988777
Q ss_pred HHHHHHHH
Q 005594 406 NNLGVLYR 413 (689)
Q Consensus 406 ~~la~~~~ 413 (689)
..+-..-.
T Consensus 509 ~Gl~~lEK 516 (564)
T KOG1174|consen 509 RGLRLLEK 516 (564)
T ss_pred HHHHHHHh
Confidence 66655433
No 53
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.87 E-value=3.9e-19 Score=198.14 Aligned_cols=398 Identities=14% Similarity=0.022 Sum_probs=314.4
Q ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005594 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKD-SGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (689)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (689)
.+...+..+...+...++++.|.+++..+.+.. ..+...+..+...|.+.|++++|.+.|++..+ .+...|..+..
T Consensus 121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~~~~t~n~li~ 197 (697)
T PLN03081 121 LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE---RNLASWGTIIG 197 (697)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC---CCeeeHHHHHH
Confidence 456677788888889999999999998887742 22567888888999999999999999988753 35667888889
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHH-----------------------------HHHHHHHHHHHhHHHHHHcCChHH
Q 005594 125 LYKDEGRLVEAAESYHKALSADPSYKP-----------------------------AAECLAIVLTDLGTSLKLAGNTQD 175 (689)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------------------~~~~~a~~~~~l~~~~~~~~~~~~ 175 (689)
.|.+.|++++|+..|+++.+....... ....-..++..+...|.+.|++++
T Consensus 198 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 277 (697)
T PLN03081 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED 277 (697)
T ss_pred HHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHH
Confidence 999999999999999988764321100 000012236667888899999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER-PMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 254 (689)
Q Consensus 176 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 254 (689)
|.+.|++. .+.+..+|..+...|.+.|++++|++.|++..+.. .-+...+..+...+.+.|++++|.+.+..+++.
T Consensus 278 A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~ 354 (697)
T PLN03081 278 ARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT 354 (697)
T ss_pred HHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh
Confidence 99999876 34578899999999999999999999999987653 235678999999999999999999999999887
Q ss_pred CC-CcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CC
Q 005594 255 SP-NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-PH 332 (689)
Q Consensus 255 ~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~ 332 (689)
.. .+. .++..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.|+.++|++.|+++.+.. ..
T Consensus 355 g~~~d~-------~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P 424 (697)
T PLN03081 355 GFPLDI-------VANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP 424 (697)
T ss_pred CCCCCe-------eehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 52 222 2344555666778899999999998754 356789999999999999999999999988753 33
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 005594 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKP--NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410 (689)
Q Consensus 333 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 410 (689)
+...+..+...+.+.|+.++|.++|+...+..+ .+...+..+..+|.+.|++++|.+.+++. ...| +..+|..+..
T Consensus 425 d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~ 502 (697)
T PLN03081 425 NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLT 502 (697)
T ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHH
Confidence 577788888999999999999999999886432 23457888999999999999999998764 2334 3677999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHhhhccCCChHHHHHHHHH
Q 005594 411 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 463 (689)
Q Consensus 411 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (689)
.+...|+.+.|...+++.+++.|++...+. .+.-.|...|..+++.+..+.
T Consensus 503 a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~--~L~~~y~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 503 ACRIHKNLELGRLAAEKLYGMGPEKLNNYV--VLLNLYNSSGRQAEAAKVVET 553 (697)
T ss_pred HHHHcCCcHHHHHHHHHHhCCCCCCCcchH--HHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999999999999776554 344566677777666555443
No 54
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.87 E-value=3.5e-17 Score=184.09 Aligned_cols=360 Identities=13% Similarity=0.045 Sum_probs=299.2
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHH
Q 005594 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP-QNACAHTHCGILYKDEGRLV 133 (689)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~ 133 (689)
...+...|..++|..+++.... | +...+..+-.++...|++++|.+.|+++.+... .+...+..+...|.+.|+.+
T Consensus 413 i~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd 489 (1060)
T PLN03218 413 FKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVD 489 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHH
Confidence 3446678899999999987654 4 567888888899999999999999999988654 36778899999999999999
Q ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHH
Q 005594 134 EAAESYHKALSADPS-YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTAL 211 (689)
Q Consensus 134 ~A~~~~~~al~~~p~-~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~ 211 (689)
+|.+.|+++.+.... +.. .+..+...|.+.|++++|++.|.++.+..- -+...|..+...+.+.|++++|.
T Consensus 490 ~A~~vf~eM~~~Gv~Pdvv-------TynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~ 562 (1060)
T PLN03218 490 AMFEVFHEMVNAGVEANVH-------TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAF 562 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999876432 233 367778888999999999999999876532 24788999999999999999999
Q ss_pred HHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHhhHHHHHHHhhhhhhhcCCHHHHH
Q 005594 212 GCYEKAALE----RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP-NFEIAKNNMAIALTDLGTKVKLEGDINQGV 286 (689)
Q Consensus 212 ~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 286 (689)
+.++++... .| +...+..+...|.+.|++++|.+.|+++.+... .+.. .|..+...+.+.|++++|+
T Consensus 563 ~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~-------tynsLI~ay~k~G~~deAl 634 (1060)
T PLN03218 563 DVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE-------VYTIAVNSCSQKGDWDFAL 634 (1060)
T ss_pred HHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChH-------HHHHHHHHHHhcCCHHHHH
Confidence 999999763 34 467888999999999999999999999988753 2333 3444455556678999999
Q ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005594 287 AYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364 (689)
Q Consensus 287 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 364 (689)
.+|+++.+.. ..+...+..+...+.+.|++++|.++++++.+.. +.+...+..+...|.+.|++++|++.|++..+..
T Consensus 635 ~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g 714 (1060)
T PLN03218 635 SIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK 714 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 9999998763 2246788899999999999999999999999874 4568899999999999999999999999987542
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005594 365 -PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433 (689)
Q Consensus 365 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 433 (689)
..+...|..+...|.+.|++++|++.|+++... .|+ ...+..+...+.+.|++++|.+.+.++++...
T Consensus 715 ~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi 785 (1060)
T PLN03218 715 LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDDADVGLDLLSQAKEDGI 785 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 235678999999999999999999999998765 454 66778888999999999999999999987643
No 55
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.87 E-value=1.1e-21 Score=193.59 Aligned_cols=263 Identities=20% Similarity=0.182 Sum_probs=82.1
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005594 50 DALSYANILRSRNKFVDALALYEIVLEK--DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (689)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (689)
..+.+|..++..|++++|++.+++.+.. .|+++..|..+|.+....+++++|+..|++++..++.++..+..++.+ .
T Consensus 10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 10 EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence 3446677777777777777777655443 366777777777777777777777777777777777777777666666 5
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcC
Q 005594 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID--PHYAPAYYNLGVVYSELM 205 (689)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g 205 (689)
..+++++|+..++++.+..++ +.. +.....++...++++++...++++.... +.++..+..+|.++.+.|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~-~~~-------l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G 160 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERDGD-PRY-------LLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLG 160 (280)
T ss_dssp -------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC
T ss_pred ccccccccccccccccccccc-cch-------hhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC
Confidence 777777777777776655433 222 3334445566677777777776655443 455666677777777777
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHH
Q 005594 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285 (689)
Q Consensus 206 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 285 (689)
+.++|+..++++++.+|++..+...++.++...|+++++.+.++...+..|+
T Consensus 161 ~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~---------------------------- 212 (280)
T PF13429_consen 161 DPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPD---------------------------- 212 (280)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT----------------------------
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC----------------------------
Confidence 7777777777777777777777777777776667666666666555554444
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005594 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 362 (689)
Q Consensus 286 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 362 (689)
++..+..+|.++...|++++|+.+|+++++.+|+++..+..+|.++...|+.++|..+++++++
T Consensus 213 -------------~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 213 -------------DPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -------------SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred -------------HHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3344445555555555555555555555555555555555555555555666666555555543
No 56
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.5e-20 Score=177.47 Aligned_cols=311 Identities=18% Similarity=0.134 Sum_probs=215.9
Q ss_pred CCCCCcccccccccCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHc
Q 005594 32 TSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111 (689)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 111 (689)
...++...........++.....+..++...+|.+|+..+..+++..|+++..|...+.++...+++++|.-..++.+++
T Consensus 33 ~~~~~~~s~~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~ 112 (486)
T KOG0550|consen 33 AATSPEYSFSQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL 112 (486)
T ss_pred hccCccccccchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec
Confidence 33334444444445677888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhC---C
Q 005594 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID---P 188 (689)
Q Consensus 112 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~ 188 (689)
+|.........+.++...++..+|...++. ..+ + ....|+..+++.+..+ |
T Consensus 113 kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~--------~~~-------~-----------~~anal~~~~~~~~s~s~~p 166 (486)
T KOG0550|consen 113 KDGFSKGQLREGQCHLALSDLIEAEEKLKS--------KQA-------Y-----------KAANALPTLEKLAPSHSREP 166 (486)
T ss_pred CCCccccccchhhhhhhhHHHHHHHHHhhh--------hhh-------h-----------HHhhhhhhhhcccccccCCc
Confidence 999999999999999999999999888871 111 0 1223334444443332 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHH
Q 005594 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268 (689)
Q Consensus 189 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 268 (689)
....+....+.|+...|++++|.+.--..+++++.+.++++..|.++...++.+.|+..|++++.++|+.......
T Consensus 167 ac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~---- 242 (486)
T KOG0550|consen 167 ACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSA---- 242 (486)
T ss_pred hhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhH----
Confidence 3445667788999999999999999999999999999999999999999999999999999999999986542211
Q ss_pred HHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHH
Q 005594 269 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIY 344 (689)
Q Consensus 269 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~ 344 (689)
.. .|+-...+..-|.-.++.|++.+|.+.|..++.++|++ +..|.+++.+.
T Consensus 243 ~~-------------------------~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~ 297 (486)
T KOG0550|consen 243 SM-------------------------MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVN 297 (486)
T ss_pred hh-------------------------hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhh
Confidence 00 01111233344444555555555555555555555543 23344444444
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005594 345 KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (689)
Q Consensus 345 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (689)
..+|+..+|+...+.++++++....++...|.|+..+++|++|.+.|+++++.
T Consensus 298 ~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 298 IRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred cccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444444444444444444444444444444444444444444444444444
No 57
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.86 E-value=4.1e-18 Score=190.01 Aligned_cols=369 Identities=14% Similarity=0.031 Sum_probs=294.5
Q ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--CCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHH
Q 005594 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDS--GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL--DPQNACAHTHC 122 (689)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 122 (689)
+...+......+...|++++|+++|+.+....+ -+...+..+..++...++++.|.+.+..+.+. .| +...+..+
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~L 164 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRV 164 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHH
Confidence 444677778889999999999999999876543 36678888889999999999999999988874 34 57788899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH----------------------------HhHHHHHHcCChH
Q 005594 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT----------------------------DLGTSLKLAGNTQ 174 (689)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~----------------------------~l~~~~~~~~~~~ 174 (689)
...|.+.|++++|.+.|+++.+ |+ ...+..+...+. .+...+...|...
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~--~~-~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE--RN-LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC--CC-eeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 9999999999999999998754 22 222222222222 2223445567778
Q ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005594 175 DGIQKYYEALKID-PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253 (689)
Q Consensus 175 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 253 (689)
.+.+.+..+++.. ..+..++..+...|.+.|++++|.+.|++.. +.+..+|..+...|.+.|+.++|++.|++..+
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 8888877776653 3356788899999999999999999998763 45788999999999999999999999999876
Q ss_pred c--CCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 005594 254 V--SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 330 (689)
Q Consensus 254 ~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 330 (689)
. .|+. . ++..+...+...|++++|.+.+..+++.. +.+..++..+...|.+.|++++|.+.|++..+
T Consensus 319 ~g~~pd~-~-------t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-- 388 (697)
T PLN03081 319 SGVSIDQ-F-------TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-- 388 (697)
T ss_pred cCCCCCH-H-------HHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--
Confidence 4 3432 2 34444455556789999999999999876 55677899999999999999999999998754
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHH
Q 005594 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP--TYAEAYNN 407 (689)
Q Consensus 331 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~ 407 (689)
.+...|+.+...|.+.|+.++|++.|++..+.. .-+..++..+...+.+.|+.++|.++|+...+..+ -+...|..
T Consensus 389 -~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~ 467 (697)
T PLN03081 389 -KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC 467 (697)
T ss_pred -CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHh
Confidence 357789999999999999999999999988653 22466788888999999999999999999987532 23567889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005594 408 LGVLYRDAGSISLAIDAYEQCLKIDPD 434 (689)
Q Consensus 408 la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (689)
+..+|.+.|+.++|.+.+++. ...|+
T Consensus 468 li~~l~r~G~~~eA~~~~~~~-~~~p~ 493 (697)
T PLN03081 468 MIELLGREGLLDEAYAMIRRA-PFKPT 493 (697)
T ss_pred HHHHHHhcCCHHHHHHHHHHC-CCCCC
Confidence 999999999999999998875 23444
No 58
>PLN03077 Protein ECB2; Provisional
Probab=99.86 E-value=5.3e-18 Score=193.78 Aligned_cols=387 Identities=15% Similarity=0.076 Sum_probs=256.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCC----------------------------------CHHHHHhHHHHHH
Q 005594 50 DALSYANILRSRNKFVDALALYEIVLEK--DSG----------------------------------NVEAHIGKGICLQ 93 (689)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~----------------------------------~~~~~~~la~~~~ 93 (689)
.|..+...|.+.|++++|+.+|+++.+. .|+ +...+..+...|.
T Consensus 255 s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~ 334 (857)
T PLN03077 255 SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYL 334 (857)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHH
Confidence 3455555666666666666666666543 222 2223333444444
Q ss_pred HhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhHHHHHHcC
Q 005594 94 MQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSAD--PSYKPAAECLAIVLTDLGTSLKLAG 171 (689)
Q Consensus 94 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~l~~~~~~~~ 171 (689)
+.|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|+++.+.. |+... +..+-..+...|
T Consensus 335 k~g~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t--------~~~ll~a~~~~g 403 (857)
T PLN03077 335 SLGSWGEAEKVFSRME---TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT--------IASVLSACACLG 403 (857)
T ss_pred hcCCHHHHHHHHhhCC---CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcee--------HHHHHHHHhccc
Confidence 4444444444444432 1233344445555555555555555555443322 32211 222223344445
Q ss_pred ChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005594 172 NTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250 (689)
Q Consensus 172 ~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 250 (689)
++++|.+.+..+.+... .+..++..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.|+.++|+..|++
T Consensus 404 ~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~ 480 (857)
T PLN03077 404 DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQ 480 (857)
T ss_pred hHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555555555554422 2355667777888888888888888887543 3456788888888889999999999988
Q ss_pred HHhcCCCcHHHHhhHHHHHH----------------------------HhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHH
Q 005594 251 CLAVSPNFEIAKNNMAIALT----------------------------DLGTKVKLEGDINQGVAYYKKALYYNWHYADA 302 (689)
Q Consensus 251 al~~~~~~~~~~~~~~~~~~----------------------------~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 302 (689)
.....+.+...+..+..++. .+-..|.+.|+.++|...|+.. +.+..+
T Consensus 481 m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s 556 (857)
T PLN03077 481 MLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVS 556 (857)
T ss_pred HHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhh
Confidence 87543333333332222222 2235677889999999999876 557788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHH
Q 005594 303 MYNLGVAYGEMLKFDMAIVFYELAFHF--NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP--NFSQSLNNLGVVY 378 (689)
Q Consensus 303 ~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~ 378 (689)
|..+...|...|+.++|++.|+++.+. .|+ ...+..+-..+.+.|+.++|.++|+...+..+ .+...+..+..++
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l 635 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 999999999999999999999998875 344 55666777788999999999999999884432 2357889999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHhhhccCCChHHHH
Q 005594 379 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLF 458 (689)
Q Consensus 379 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (689)
.+.|++++|.+.+++. ...|+ ..+|..|-..+...|+.+.+....+++++++|++...+. +++-.|...|..++..
T Consensus 636 ~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~--ll~n~ya~~g~~~~a~ 711 (857)
T PLN03077 636 GRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYI--LLCNLYADAGKWDEVA 711 (857)
T ss_pred HhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHH--HHHHHHHHCCChHHHH
Confidence 9999999999999875 35565 677888888889999999999999999999999876644 3444566666655544
Q ss_pred H
Q 005594 459 E 459 (689)
Q Consensus 459 ~ 459 (689)
+
T Consensus 712 ~ 712 (857)
T PLN03077 712 R 712 (857)
T ss_pred H
Confidence 3
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.86 E-value=3e-19 Score=192.17 Aligned_cols=249 Identities=12% Similarity=-0.005 Sum_probs=139.5
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 005594 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL---------MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241 (689)
Q Consensus 171 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 241 (689)
+.+++|+..|+++++.+|+++.++..+|.++... +++++|+..++++++++|+++.++..+|.++...|++
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 3456777777777777777777777777666533 2366777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005594 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV 321 (689)
Q Consensus 242 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 321 (689)
++|+..|+++++++|++...+..++.++.. .|++++|+..++++++.+|.++.....++.++...|++++|+.
T Consensus 355 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-------~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~ 427 (553)
T PRK12370 355 IVGSLLFKQANLLSPISADIKYYYGWNLFM-------AGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIR 427 (553)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHH
Confidence 777777777666666655444333333322 3455555555555555555555444444444455555555555
Q ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005594 322 FYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (689)
Q Consensus 322 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (689)
.+++++... |+++..+..+|.++...|++++|+..+++.....|....+...++..|...|+ +|...+++.++....
T Consensus 428 ~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 428 LGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQR 505 (553)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhH
Confidence 555555443 44555555555555555555555555555555555555555555555555542 444444444433222
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005594 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCL 429 (689)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al 429 (689)
...-...+..+|.-.|+.+.+..+ +++.
T Consensus 506 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~ 533 (553)
T PRK12370 506 IDNNPGLLPLVLVAHGEAIAEKMW-NKFK 533 (553)
T ss_pred hhcCchHHHHHHHHHhhhHHHHHH-HHhh
Confidence 221122244455555555554444 4433
No 60
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.86 E-value=3.5e-18 Score=176.17 Aligned_cols=295 Identities=10% Similarity=-0.032 Sum_probs=144.0
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhH-HHHHHHhCCHHHHHHHHHHHHHcCCCCHHH-HHHHHHHHH
Q 005594 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGK-GICLQMQNMGRLAFDSFSEAVKLDPQNACA-HTHCGILYK 127 (689)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~ 127 (689)
..+..|...+..|+|++|.+.+.+.-+..+ ++..++.+ +......|+++.|..++.++.+.+|++..+ ....+.++.
T Consensus 86 ~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l 164 (398)
T PRK10747 86 KQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQL 164 (398)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 344455555555555555555444333222 22222222 333355555555555555555555554322 223355555
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH--------HHHH
Q 005594 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY--------NLGV 199 (689)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--------~la~ 199 (689)
..|++++|...++++.+.+|+++.+ +..++.++...|++++|++.+.+..+....+..... .+..
T Consensus 165 ~~g~~~~Al~~l~~~~~~~P~~~~a-------l~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~ 237 (398)
T PRK10747 165 ARNENHAARHGVDKLLEVAPRHPEV-------LRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMD 237 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555544 333444444455555555555555544433322111 1111
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhc
Q 005594 200 VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279 (689)
Q Consensus 200 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~ 279 (689)
......+-+...+.++...+..|+++.+...++..+...|+.++|.+.++++++..+
T Consensus 238 ~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~----------------------- 294 (398)
T PRK10747 238 QAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY----------------------- 294 (398)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-----------------------
Confidence 111112222222222332233344555555555555555555555555555554322
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005594 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (689)
Q Consensus 280 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 359 (689)
++......+.+ ..++.+++++.+++.++.+|+++..+..+|.++...+++++|.++|++
T Consensus 295 -------------------~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~ 353 (398)
T PRK10747 295 -------------------DERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRA 353 (398)
T ss_pred -------------------CHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 22222222222 235556666666666666666666666666666666666666666666
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005594 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (689)
Q Consensus 360 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (689)
+++..|++.. +..++.++.+.|+.++|.++|++++.+
T Consensus 354 al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 354 ALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666555432 345666666666666666666666554
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=99.86 E-value=3.9e-19 Score=191.26 Aligned_cols=248 Identities=15% Similarity=0.030 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHH
Q 005594 98 GRLAFDSFSEAVKLDPQNACAHTHCGILYKDE---------GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLK 168 (689)
Q Consensus 98 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~ 168 (689)
+++|+..|+++++++|+++.++..+|.++... +++++|+..++++++++|++..+ +..+|.++.
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a-------~~~lg~~~~ 349 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQA-------LGLLGLINT 349 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHH-------HHHHHHHHH
Confidence 34455555555555555544444444443321 12445555555555555554443 333344444
Q ss_pred HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005594 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACY 248 (689)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 248 (689)
..|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.++...|++++|+..+
T Consensus 350 ~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 350 IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555544444434444444445555555555
Q ss_pred HHHHhcC-CCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005594 249 ERCLAVS-PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (689)
Q Consensus 249 ~~al~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 327 (689)
++++... |+++..+..++.++.. .|++++|...+++.....|....+...++..+...| ++|...+++.+
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~-------~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSL-------KGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHh-------CCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 5544442 3344444444444433 235555555555544444444445555555555555 24444444444
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005594 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 362 (689)
Q Consensus 328 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 362 (689)
+..............++.-.|+-+.+..+ +++.+
T Consensus 501 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 501 ESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred HHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 43222222222245555555555555555 44443
No 62
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.86 E-value=4e-20 Score=182.63 Aligned_cols=260 Identities=19% Similarity=0.247 Sum_probs=199.8
Q ss_pred HHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005594 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (689)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 240 (689)
+..|..+.+.|+..+|.-.|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.+++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 45788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHhcCCHHH
Q 005594 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--HYADAMYNLGVAYGEMLKFDM 318 (689)
Q Consensus 241 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~ 318 (689)
-.+|++++.+-+...|........--.-.............+..-.++|-.+....| .++++...||.+|...|+|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999999999887764311100000000000000111234445566666666666 577888888888888888888
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005594 319 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398 (689)
Q Consensus 319 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 398 (689)
|+.+|+.+|...|++...|+.||-.+....+.++|+..|++|+++.|....++++||..+..+|.|++|.++|-.+|.+.
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888775
Q ss_pred CCc----------HHHHHHHHHHHHHcCCHHH
Q 005594 399 PTY----------AEAYNNLGVLYRDAGSISL 420 (689)
Q Consensus 399 p~~----------~~~~~~la~~~~~~g~~~~ 420 (689)
+.. ..+|..|-.++..+++.+-
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~ 560 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDL 560 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchH
Confidence 431 2355555555555555543
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.86 E-value=5.2e-20 Score=168.36 Aligned_cols=245 Identities=19% Similarity=0.268 Sum_probs=225.3
Q ss_pred HHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005594 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (689)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (689)
-..+|.||.+.|.+.+|.+.++.+++..|. ++.+..|+.+|.+..+...|+..+...++..|.+...+..++.++..++
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 356899999999999999999999987665 8899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q 005594 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 319 (689)
Q Consensus 240 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 319 (689)
++++|.++|+.+++..|.+.++...+ +.-|+-.++.+-|+.+|++.+++.-.+++.+.++|.+.+..++++-+
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAci-------a~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACI-------AVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeee-------eeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhh
Confidence 99999999999999999987654433 44445578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005594 320 IVFYELAFHFNP---HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396 (689)
Q Consensus 320 ~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 396 (689)
+..|++++.... ...++|+++|.+....|++..|..+|+-++..++++.+++.+||.+-.+.|+.++|..+++.+-.
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 999999998743 34789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHH
Q 005594 397 ANPTYAEAYNNLGVLY 412 (689)
Q Consensus 397 ~~p~~~~~~~~la~~~ 412 (689)
..|+-.+..++++.+-
T Consensus 458 ~~P~m~E~~~Nl~~~s 473 (478)
T KOG1129|consen 458 VMPDMAEVTTNLQFMS 473 (478)
T ss_pred hCccccccccceeEEe
Confidence 9999888888776543
No 64
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=4e-20 Score=182.63 Aligned_cols=267 Identities=21% Similarity=0.267 Sum_probs=218.0
Q ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005594 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (689)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (689)
.+...-+..|..+++.|+..+|.-+|+.+++.+|.++++|..||.+....++-..|+..++++++++|+|..++..||..
T Consensus 283 ~~~pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVS 362 (579)
T KOG1125|consen 283 IDHPDPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVS 362 (579)
T ss_pred cCCCChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 34556788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH
Q 005594 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP--HYAPAYYNLGVVYSE 203 (689)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~ 203 (689)
|...|.-.+|..++.+.+...|........--...............+..-.+.|..+....| .+++++..||.+|..
T Consensus 363 ytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l 442 (579)
T KOG1125|consen 363 YTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL 442 (579)
T ss_pred HhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc
Confidence 999999999999999999987764221000000000000000111223445566777777777 689999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHH
Q 005594 204 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN 283 (689)
Q Consensus 204 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 283 (689)
.|+|++|+.+|+.|+..+|++...|..||-.+....+.++|+..|++|+++.|.+..++++++..+.++ |.|.
T Consensus 443 s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNl-------G~yk 515 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNL-------GAYK 515 (579)
T ss_pred chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhh-------hhHH
Confidence 999999999999999999999999999999999999999999999999999999998888888877775 5999
Q ss_pred HHHHHHHHHHhhCCCC----------HHHHHHHHHHHHhcCCHHHH
Q 005594 284 QGVAYYKKALYYNWHY----------ADAMYNLGVAYGEMLKFDMA 319 (689)
Q Consensus 284 ~A~~~~~~al~~~~~~----------~~~~~~la~~~~~~g~~~~A 319 (689)
+|.++|-.++.+.+.. ..+|-.|=.++..+++.+.+
T Consensus 516 EA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 516 EAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred HHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 9999999999876541 23555555555555555533
No 65
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.85 E-value=6.1e-19 Score=154.60 Aligned_cols=215 Identities=24% Similarity=0.240 Sum_probs=198.0
Q ss_pred ccccCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 005594 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH 121 (689)
Q Consensus 42 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (689)
.......+..+.+|..|+..|++..|...++++|+.+|++..+|..++.+|...|+.+.|.+.|+++++++|++.+++.+
T Consensus 29 ~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNN 108 (250)
T COG3063 29 TDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNN 108 (250)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhh
Confidence 33445677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 005594 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVY 201 (689)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 201 (689)
.|..++.+|++++|...|++++.. |..... +..+.++|.|..+.|+++.|..+|+++++.+|+.+.....++...
T Consensus 109 YG~FLC~qg~~~eA~q~F~~Al~~-P~Y~~~----s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~ 183 (250)
T COG3063 109 YGAFLCAQGRPEEAMQQFERALAD-PAYGEP----SDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLH 183 (250)
T ss_pred hhHHHHhCCChHHHHHHHHHHHhC-CCCCCc----chhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHH
Confidence 999999999999999999999873 443332 445899999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 005594 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (689)
Q Consensus 202 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 261 (689)
+..|+|..|..++++.....+-..+.+.....+-...|+-+.+-++=.+.-...|...+.
T Consensus 184 ~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 184 YKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 999999999999999998888888999999999999999999999988888889987643
No 66
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.84 E-value=3.1e-17 Score=150.52 Aligned_cols=320 Identities=19% Similarity=0.198 Sum_probs=254.2
Q ss_pred hHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHH
Q 005594 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AEAYCNMGVIYKN 237 (689)
Q Consensus 163 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~ 237 (689)
.|.-+...++.++|+..|..+++.+|...++...||.+|...|..+.|+..-+..++. |+. ..+...+|.-|..
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHH
Confidence 4555666789999999999999999999999999999999999999999998877654 432 4578899999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHh
Q 005594 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY-----ADAMYNLGVAYGE 312 (689)
Q Consensus 238 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~ 312 (689)
.|-++.|...|....+...--. .++..+-.+|....++++|++..++..+..++. +..+..++..+..
T Consensus 120 aGl~DRAE~~f~~L~de~efa~-------~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 120 AGLLDRAEDIFNQLVDEGEFAE-------GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred hhhhhHHHHHHHHHhcchhhhH-------HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 9999999999999876543322 245556667777899999999999999988775 3568889999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 005594 313 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYTVQGKMDAAAEMI 391 (689)
Q Consensus 313 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~ 391 (689)
..+.+.|+..+.++++.+|++..+-..+|.++...|+|++|++.++.+++.+|+. +++...|..+|.++|+.++.+..+
T Consensus 193 ~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 193 SSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred hhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987 678999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHhhhccCCChHHHHHHHHHHHHHHhhh
Q 005594 392 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRL 471 (689)
Q Consensus 392 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (689)
.++.+..++ +++...++..-....-.+.|..++.+-+...|+-...+.-.-+.+.-...|...+.+...+.......+.
T Consensus 273 ~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~ 351 (389)
T COG2956 273 RRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRR 351 (389)
T ss_pred HHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhh
Confidence 999999887 5666777787788888899999999999999986543322212222223333333333333222211111
Q ss_pred ccccccCCCCCCCCCCeEEEEecCCcccch
Q 005594 472 YSQYTSWDNTKDPERPLVIGYVSPDYFTHS 501 (689)
Q Consensus 472 ~~~~~~~~~~~~~~~~lriG~~S~d~~~h~ 501 (689)
.+ +=|.-+.||-+.-|.+|-
T Consensus 352 ~~----------~YRC~~CGF~a~~l~W~C 371 (389)
T COG2956 352 KP----------RYRCQNCGFTAHTLYWHC 371 (389)
T ss_pred cC----------CceecccCCcceeeeeeC
Confidence 11 125567788777777663
No 67
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.83 E-value=5.7e-18 Score=167.05 Aligned_cols=231 Identities=18% Similarity=0.126 Sum_probs=155.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 005594 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD 208 (689)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 208 (689)
.+..+.++..+.+++...+-++.. .+..++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|+++
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~---~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEE---RAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHh---hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHH
Confidence 456778888888888755543332 34558888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHH
Q 005594 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 288 (689)
Q Consensus 209 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 288 (689)
+|+..|+++++++|++..++.++|.++...|++++|++.++++++.+|+++... .+.. +....+++++|+..
T Consensus 116 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~-----~~~~---l~~~~~~~~~A~~~ 187 (296)
T PRK11189 116 AAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRA-----LWLY---LAESKLDPKQAKEN 187 (296)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-----HHHH---HHHccCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999876211 1111 11224567777777
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005594 289 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF-------HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMAL 361 (689)
Q Consensus 289 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 361 (689)
+++.....+.. .+. .+......|+..++ ..++.+. ++.|...++|+++|.++...|++++|+.+|++++
T Consensus 188 l~~~~~~~~~~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al 263 (296)
T PRK11189 188 LKQRYEKLDKE--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLAL 263 (296)
T ss_pred HHHHHhhCCcc--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 76655433221 111 23444444544332 1222222 3334444555555555555555555555555555
Q ss_pred hcCC-CCHHHHHHH
Q 005594 362 SIKP-NFSQSLNNL 374 (689)
Q Consensus 362 ~~~p-~~~~~~~~l 374 (689)
+.+| +..+..+.+
T Consensus 264 ~~~~~~~~e~~~~~ 277 (296)
T PRK11189 264 ANNVYNFVEHRYAL 277 (296)
T ss_pred HhCCchHHHHHHHH
Confidence 5554 333333333
No 68
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.83 E-value=4.2e-18 Score=177.11 Aligned_cols=378 Identities=19% Similarity=0.226 Sum_probs=297.0
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHH--------------------------HHhCCHHHHHH
Q 005594 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICL--------------------------QMQNMGRLAFD 103 (689)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~--------------------------~~~g~~~~A~~ 103 (689)
.....+.+......|.+|...+....... .+-+.+..+..|+ ..+++...|+.
T Consensus 401 n~~akgl~~ie~~~y~Daa~tl~lv~~~s-~nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~ 479 (1238)
T KOG1127|consen 401 NQRAKGLAPIEANVYTDAAITLDLVSSLS-FNDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALALH 479 (1238)
T ss_pred hhhhcchhHHHHhhchHHHHHHHHHHHhh-cCchhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 34555566666677777777776665544 1111111111111 23345788999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHH
Q 005594 104 SFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA 183 (689)
Q Consensus 104 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~a 183 (689)
.|-+++++++.-..++..+|.+|...-+...|.++|.++.++++.+.++ ....+..+....+++.|......+
T Consensus 480 ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaea-------aaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 480 ALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEA-------AAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhh-------HHHHHHHhhccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998777 455666777789999999997766
Q ss_pred HhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 005594 184 LKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (689)
Q Consensus 184 l~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 261 (689)
-+..|.. ...|..+|..|.+.++..+|+..|+.++..+|.+...|..+|.+|...|++..|++.|.++..+.|.+...
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 6666543 34567799999999999999999999999999999999999999999999999999999999999998877
Q ss_pred HhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----
Q 005594 262 KNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY-------ADAMYNLGVAYGEMLKFDMAIVFYELAFHF----- 329 (689)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~----- 329 (689)
.+..+..... .|.+.+|+..+...+...... .+.+..++..+...|-..+|..+++++++.
T Consensus 633 ~fk~A~~ecd-------~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 633 RFKEAVMECD-------NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred HHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 7666665555 468999998888877654332 344555555555555555555555554332
Q ss_pred ------------------------CC-----------------------------------------CCHHHHHHHHHHH
Q 005594 330 ------------------------NP-----------------------------------------HCAEACNNLGVIY 344 (689)
Q Consensus 330 ------------------------~p-----------------------------------------~~~~~~~~la~~~ 344 (689)
.| ..+..|+++|..|
T Consensus 706 ~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 706 IHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINY 785 (1238)
T ss_pred HHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHH
Confidence 00 1134577778777
Q ss_pred HH--------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 005594 345 KD--------RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416 (689)
Q Consensus 345 ~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 416 (689)
+. +.+...|+.++.+++++..++...|..||.+ ...|++.-|..+|-+.+..+|.....|.++|.++....
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~ 864 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQ 864 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecc
Confidence 65 2344689999999999999999999999988 66799999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCChhhHhhHH
Q 005594 417 SISLAIDAYEQCLKIDPDSRNAGQNRL 443 (689)
Q Consensus 417 ~~~~A~~~~~~al~~~p~~~~~~~~~~ 443 (689)
+++-|...|.++..++|.+...|....
T Consensus 865 d~E~A~~af~~~qSLdP~nl~~WlG~A 891 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQSLDPLNLVQWLGEA 891 (1238)
T ss_pred cHHHhhHHHHhhhhcCchhhHHHHHHH
Confidence 999999999999999999988776543
No 69
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=4.4e-16 Score=154.15 Aligned_cols=391 Identities=14% Similarity=0.042 Sum_probs=272.9
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005594 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (689)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (689)
...++..-..+...|+|++|++...+++...|++..+....-.++.+.++|++|+...++-....-.+ ...+..+.|.+
T Consensus 12 ~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Y 90 (652)
T KOG2376|consen 12 LEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHH
Confidence 36788888899999999999999999999999999999999999999999999995554433222122 22378899999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhC--------------------
Q 005594 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID-------------------- 187 (689)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------------------- 187 (689)
+.+..++|+..++ ..++.+... +...+.+++++|+|++|+..|+..++.+
T Consensus 91 rlnk~Dealk~~~---~~~~~~~~l-------l~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~ 160 (652)
T KOG2376|consen 91 RLNKLDEALKTLK---GLDRLDDKL-------LELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQ 160 (652)
T ss_pred HcccHHHHHHHHh---cccccchHH-------HHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhh
Confidence 9999999999998 334444333 4445666777799999999998875432
Q ss_pred ----------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CC-------CHHHHHHHHHHHHHcCCH
Q 005594 188 ----------PH-YAPAYYNLGVVYSELMQYDTALGCYEKAALER--------PM-------YAEAYCNMGVIYKNRGDL 241 (689)
Q Consensus 188 ----------~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~-------~~~~~~~la~~~~~~g~~ 241 (689)
|. ..+.+++.+.++...|+|.+|++.+++++.+. .+ -..+...++.++..+|+.
T Consensus 161 ~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 161 VQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred HHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 11 35678999999999999999999999995431 11 124567889999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHhhHHHHH------------------------------------------HHhhhhhhhc
Q 005594 242 ESAIACYERCLAVSPNFEIAKNNMAIAL------------------------------------------TDLGTKVKLE 279 (689)
Q Consensus 242 ~~A~~~~~~al~~~~~~~~~~~~~~~~~------------------------------------------~~l~~~~~~~ 279 (689)
++|...|...++.++.+.........-+ .+.+.+.+..
T Consensus 241 ~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t 320 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT 320 (652)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998776542211111100 0111111111
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 005594 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQ 358 (689)
Q Consensus 280 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~ 358 (689)
+..+.+.+.....-...|...--.........+...+.+|+.++....+.+|.. ..+...++.+...+|+++.|++.+.
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 111222211111111122222112222333333337888999999998888887 7788889999999999999999998
Q ss_pred HHHhc-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 005594 359 MALSI-------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA-------NPTYAEAYNNLGVLYRDAGSISLAIDA 424 (689)
Q Consensus 359 ~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~ 424 (689)
..+.. ....+.+-..+-..+++.++.+-|...+.+++.- .+.....+..++....+.|+-++|...
T Consensus 401 ~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~ 480 (652)
T KOG2376|consen 401 LFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSL 480 (652)
T ss_pred HHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHH
Confidence 44321 1223444455555677777766666666666653 233344566778888888999999999
Q ss_pred HHHHHhcCCCChhhHhhHHHHhhhc
Q 005594 425 YEQCLKIDPDSRNAGQNRLLAMNYI 449 (689)
Q Consensus 425 ~~~al~~~p~~~~~~~~~~~~~~~~ 449 (689)
+++.++.+|++.++...+..+.+++
T Consensus 481 leel~k~n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 481 LEELVKFNPNDTDLLVQLVTAYARL 505 (652)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHhc
Confidence 9999999999999999888777765
No 70
>PLN03077 Protein ECB2; Provisional
Probab=99.82 E-value=1.1e-16 Score=183.00 Aligned_cols=360 Identities=10% Similarity=0.012 Sum_probs=280.0
Q ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHH
Q 005594 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--PQNACAHTHCG 123 (689)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la 123 (689)
.+...+..+...|.+.|++++|.++|++..+ .+...|..+...|.+.|++++|++.|+++.+.. |+. ..+..+-
T Consensus 321 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~-~t~~~ll 396 (857)
T PLN03077 321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE-ITIASVL 396 (857)
T ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc-eeHHHHH
Confidence 3566778888999999999999999998643 356789999999999999999999999886643 544 3455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 005594 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (689)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 203 (689)
..+...|++++|.+.++.+.+....... .++..+...|.+.|++++|.+.|++..+ .+...|..+...|.+
T Consensus 397 ~a~~~~g~~~~a~~l~~~~~~~g~~~~~------~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~ 467 (857)
T PLN03077 397 SACACLGDLDVGVKLHELAERKGLISYV------VVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRL 467 (857)
T ss_pred HHHhccchHHHHHHHHHHHHHhCCCcch------HHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHH
Confidence 6778888999999988888876543221 2356677778888888888888887543 345678888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHH-----------------------------------HHHHHHHHHHcCCHHHHHHHH
Q 005594 204 LMQYDTALGCYEKAALERPMYAEA-----------------------------------YCNMGVIYKNRGDLESAIACY 248 (689)
Q Consensus 204 ~g~~~~A~~~~~~al~~~p~~~~~-----------------------------------~~~la~~~~~~g~~~~A~~~~ 248 (689)
.|+.++|+..|+++....+.+... ...+...|.+.|+.++|...|
T Consensus 468 ~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f 547 (857)
T PLN03077 468 NNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547 (857)
T ss_pred CCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHH
Confidence 888888888888876532222222 233446777888888888888
Q ss_pred HHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005594 249 ERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH-YADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (689)
Q Consensus 249 ~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 327 (689)
+.. +.+...|. .+...+...|+.++|+++|++..+.... +..++..+...+...|+.++|.++|+.+.
T Consensus 548 ~~~----~~d~~s~n-------~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 548 NSH----EKDVVSWN-------ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred Hhc----CCChhhHH-------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 775 33333443 4444555678999999999998875322 34556667778999999999999999998
Q ss_pred hhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 005594 328 HFN--PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405 (689)
Q Consensus 328 ~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 405 (689)
+.. ..+...|..+..++.+.|++++|.+.+++. ...|+ ..+|..|-..+...|+.+.+....+++++++|++...+
T Consensus 617 ~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y 694 (857)
T PLN03077 617 EKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYY 694 (857)
T ss_pred HHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Confidence 543 234678999999999999999999999885 34554 66788888888889999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594 406 NNLGVLYRDAGSISLAIDAYEQCLKI 431 (689)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al~~ 431 (689)
..++.+|...|++++|.+..+...+.
T Consensus 695 ~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 695 ILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 99999999999999999999887653
No 71
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.82 E-value=1.3e-17 Score=160.56 Aligned_cols=206 Identities=20% Similarity=0.163 Sum_probs=188.8
Q ss_pred cCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005594 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (689)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (689)
...+..++.+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|++.++++++..|.+..++..+|.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 005594 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (689)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 204 (689)
++...|++++|+..+++++...+... ....+..+|.++...|++++|...+.+++..+|.+...+..+|.++...
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 182 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQ-----PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLR 182 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhcccccc-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHc
Confidence 99999999999999999998542211 1223677899999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005594 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (689)
Q Consensus 205 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 255 (689)
|++++|...++++++..|.++..+..++.++...|+.++|..+.+.+....
T Consensus 183 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 183 GQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 999999999999999989889999999999999999999999888776553
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.82 E-value=1.7e-17 Score=163.64 Aligned_cols=239 Identities=18% Similarity=0.167 Sum_probs=161.0
Q ss_pred CCHHHHHHHHHHHHHhCC---C-CHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005594 62 NKFVDALALYEIVLEKDS---G-NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAE 137 (689)
Q Consensus 62 g~~~~A~~~~~~~l~~~p---~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 137 (689)
+..+.++..+.+++...| . .+..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 567788888888886433 2 356788888888888999999988899988888888888888888888888888888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594 138 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217 (689)
Q Consensus 138 ~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 217 (689)
.|+++++++|++..+ +.++|.++...|++++|++.++++++.+|+++.... ...+....+++++|+..+.+.
T Consensus 120 ~~~~Al~l~P~~~~a-------~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 120 AFDSVLELDPTYNYA-------YLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHhCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHHHH
Confidence 888888888887665 666777777778888888888888888887763211 122334566788888888666
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCC
Q 005594 218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW 297 (689)
Q Consensus 218 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 297 (689)
....+.. .+. .+.+....|+..++ ..++.+.+.... ..+..|
T Consensus 192 ~~~~~~~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~----------------------------------~~~l~~ 233 (296)
T PRK11189 192 YEKLDKE--QWG-WNIVEFYLGKISEE-TLMERLKAGATD----------------------------------NTELAE 233 (296)
T ss_pred HhhCCcc--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCC----------------------------------cHHHHH
Confidence 5443221 121 34444555555433 233333322222 222234
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHH
Q 005594 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP-HCAEACNNLGVIYKD 346 (689)
Q Consensus 298 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~ 346 (689)
...++|+.+|.++...|++++|+.+|+++++.+| +..+..+.+..+...
T Consensus 234 ~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 234 RLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALL 283 (296)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 4556677777777777777777777777777775 445555544444443
No 73
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.82 E-value=1.2e-16 Score=159.89 Aligned_cols=347 Identities=14% Similarity=0.114 Sum_probs=265.9
Q ss_pred HHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005594 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD 162 (689)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~ 162 (689)
..++..+.-.+..++|.+.++..+.+++..|++++.+...|..+..+|+-++|......++..++.+.-. |..
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vC-------wHv 80 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVC-------WHV 80 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchh-------HHH
Confidence 4566777777889999999999999999999999999999999999999999999999999998887655 778
Q ss_pred hHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 005594 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242 (689)
Q Consensus 163 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 242 (689)
+|.++....+|++|+++|+.++...|++...+..++.+..++++++-....-.+.++..|..-..|...+..+...|++.
T Consensus 81 ~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~ 160 (700)
T KOG1156|consen 81 LGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYK 160 (700)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC---CCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q 005594 243 SAIACYERCLAVS---PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 319 (689)
Q Consensus 243 ~A~~~~~~al~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 319 (689)
.|...++...+.. |+... .....+......+....|..++|++.+..--...-+........+.++..++++++|
T Consensus 161 ~A~~il~ef~~t~~~~~s~~~--~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA 238 (700)
T KOG1156|consen 161 MALEILEEFEKTQNTSPSKED--YEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEA 238 (700)
T ss_pred HHHHHHHHHHHhhccCCCHHH--HHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhH
Confidence 9999988887765 33222 222333444455666678888888877665443334445666789999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCCH-------------HHHHHHHHHH---HHc-
Q 005594 320 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV-ECYQMALSIKPNFS-------------QSLNNLGVVY---TVQ- 381 (689)
Q Consensus 320 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~-------------~~~~~la~~~---~~~- 381 (689)
...|...+..+|++...+..+-.++.+-.+--+++ ..|...-+..|... +....+..++ .+.
T Consensus 239 ~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 239 VKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 99999999999999998888877775333334444 45554444332210 0000011110 011
Q ss_pred ------------CCHHHHHHHHHHHHHh-----C--------------CCc--HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594 382 ------------GKMDAAAEMIEKAIAA-----N--------------PTY--AEAYNNLGVLYRDAGSISLAIDAYEQC 428 (689)
Q Consensus 382 ------------g~~~~A~~~~~~al~~-----~--------------p~~--~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (689)
.+..+. ..+++.+.. . |-. ...++.++.-+...|+++.|..+...|
T Consensus 319 ~p~vf~dl~SLyk~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A 397 (700)
T KOG1156|consen 319 VPSVFKDLRSLYKDPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA 397 (700)
T ss_pred CCchhhhhHHHHhchhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 111111 133333221 1 111 345678899999999999999999999
Q ss_pred HhcCCCChhhH
Q 005594 429 LKIDPDSRNAG 439 (689)
Q Consensus 429 l~~~p~~~~~~ 439 (689)
+...|.-.+.+
T Consensus 398 IdHTPTliEly 408 (700)
T KOG1156|consen 398 IDHTPTLIELY 408 (700)
T ss_pred hccCchHHHHH
Confidence 99999887665
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.81 E-value=1.4e-17 Score=146.10 Aligned_cols=205 Identities=22% Similarity=0.217 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHH
Q 005594 192 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 271 (689)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 271 (689)
.+...||.-|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|++++++.|+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-------------- 101 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-------------- 101 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC--------------
Confidence 445555666666666666666666666666666666666666666655555555555555555554
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCC
Q 005594 272 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--NPHCAEACNNLGVIYKDRDN 349 (689)
Q Consensus 272 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~ 349 (689)
+.+++++.|..++.+|++++|...|++++.. .+..+..+.++|.|..+.|+
T Consensus 102 ---------------------------~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq 154 (250)
T COG3063 102 ---------------------------NGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ 154 (250)
T ss_pred ---------------------------ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC
Confidence 5555666666666666777777777766654 34556677777777777777
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005594 350 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429 (689)
Q Consensus 350 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 429 (689)
++.|..+|+++++++|+.+.....++...++.|++..|..++++.....+-.++.+.....+-...|+-+.|-.+=.+..
T Consensus 155 ~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 155 FDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred chhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777666666666666777777777777777777777
Q ss_pred hcCCCChh
Q 005594 430 KIDPDSRN 437 (689)
Q Consensus 430 ~~~p~~~~ 437 (689)
...|...+
T Consensus 235 r~fP~s~e 242 (250)
T COG3063 235 RLFPYSEE 242 (250)
T ss_pred HhCCCcHH
Confidence 77776554
No 75
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.7e-18 Score=163.82 Aligned_cols=277 Identities=19% Similarity=0.203 Sum_probs=237.4
Q ss_pred HHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005594 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236 (689)
Q Consensus 157 a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 236 (689)
+.-....|..++...+|.+|+..+..+++..|+++..|.+.+..+...+++++|.-..++.++++|.....+...+.++.
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL 128 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence 33456677778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHH------------hcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 005594 237 NRGDLESAIACYERCL------------AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 304 (689)
Q Consensus 237 ~~g~~~~A~~~~~~al------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 304 (689)
..++..+|.+.++..- .+.|.+... ......-..-+.++...+++++|...--..+++++.+.++++
T Consensus 129 a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~-pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~ 207 (486)
T KOG0550|consen 129 ALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSRE-PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALY 207 (486)
T ss_pred hhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCC-chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHH
Confidence 9998888887665211 011111000 000111122234455578999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----H
Q 005594 305 NLGVAYGEMLKFDMAIVFYELAFHFNPHCA------------EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----S 368 (689)
Q Consensus 305 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~ 368 (689)
..|.++...++.+.|+..|++++.++|+.. +.+..-|.-.++.|++.+|.++|..++.++|++ .
T Consensus 208 vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~na 287 (486)
T KOG0550|consen 208 VRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNA 287 (486)
T ss_pred hcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhH
Confidence 999999999999999999999999998763 456677888999999999999999999999987 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005594 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (689)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (689)
..|.+++.+..++|+..+|+...+.++++++....++...|.++..++++++|++.|+++++...+
T Consensus 288 klY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 288 KLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 478999999999999999999999999999999999999999999999999999999999998776
No 76
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=6.6e-15 Score=141.79 Aligned_cols=392 Identities=15% Similarity=0.093 Sum_probs=306.7
Q ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 005594 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (689)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (689)
+...|+..|+--..++++..|..+|+++|..+..+...|...+.+-++......|...+.+++.+-|.-...|+....+-
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 35667778888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH--------------------------HHHHHhHHHHHHcCChHHHHHHH
Q 005594 127 KDEGRLVEAAESYHKALSADPSYKPAAECLA--------------------------IVLTDLGTSLKLAGNTQDGIQKY 180 (689)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a--------------------------~~~~~l~~~~~~~~~~~~A~~~~ 180 (689)
...|+...|.+.|++.++..|+. .++.... ..+...+..-...|+...|...|
T Consensus 152 E~LgNi~gaRqiferW~~w~P~e-qaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEWEPDE-QAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HHhcccHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 99999999999999999999873 2322211 12344555556677778888888
Q ss_pred HHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHH----------------------------------------
Q 005594 181 YEALKIDPHYA---PAYYNLGVVYSELMQYDTALGCYEKA---------------------------------------- 217 (689)
Q Consensus 181 ~~al~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~a---------------------------------------- 217 (689)
+++++.-.++. ..+...|..-..++.++.|.-+|+-+
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 87776644331 22233333333444444444444433
Q ss_pred ----HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhh---hhhcCCHHHHHHHHH
Q 005594 218 ----ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK---VKLEGDINQGVAYYK 290 (689)
Q Consensus 218 ----l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~A~~~~~ 290 (689)
++.+|.+.++|+..-.+....|+.+.-.+.|++++...|.........-.+|.-+..+ .....+.+.+.+.|+
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3356777888998888888899999999999999988876443322222222222221 124678999999999
Q ss_pred HHHhhCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005594 291 KALYYNWH----YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366 (689)
Q Consensus 291 ~al~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 366 (689)
.++++-|. .+.+|...|.....+.+...|.+.+-.++-..|.+ ........+-.++++++....+|++.++..|.
T Consensus 391 ~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe 469 (677)
T KOG1915|consen 391 ACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPE 469 (677)
T ss_pred HHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH
Confidence 99999886 36789999999999999999999999999999985 44555566777889999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhh
Q 005594 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-A-EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (689)
Q Consensus 367 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (689)
+..+|...|.+-..+|+.+.|...|+-|++...-+ + -.|-.....-...|.++.|...|++.|+..+... ++..
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWis 545 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWIS 545 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHh
Confidence 99999999999999999999999999998875433 2 2344555566779999999999999999998766 4443
No 77
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.81 E-value=1.2e-16 Score=146.70 Aligned_cols=299 Identities=18% Similarity=0.184 Sum_probs=251.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCC-----HHHH
Q 005594 120 THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAY 194 (689)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~ 194 (689)
+..|.-+.-.++.++|+..|..+++.+|+..++ ...+|+.+...|..+.|+..-+..++. |+. ..+.
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~-------~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl 110 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEA-------HLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLAL 110 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHH-------HHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 345666677889999999999999999988776 777889999999999999998877654 443 4578
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhh
Q 005594 195 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 274 (689)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~ 274 (689)
..||.-|...|-++.|...|....+...--..+...+..+|....++++|++.-++..++.++.. ...++..|..++.
T Consensus 111 ~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~--~~eIAqfyCELAq 188 (389)
T COG2956 111 QQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY--RVEIAQFYCELAQ 188 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc--hhHHHHHHHHHHH
Confidence 89999999999999999999999877666678999999999999999999999999999988753 4568899999999
Q ss_pred hhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHH
Q 005594 275 KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKA 353 (689)
Q Consensus 275 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A 353 (689)
.+....+.+.|...++++++.+|+...+-..+|.++...|+|++|++.++.+++.+|+. +++...+..+|.++|+.++.
T Consensus 189 ~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 189 QALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred HHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999987 67888999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--cCCHHHHHHHHHHHH
Q 005594 354 VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD--AGSISLAIDAYEQCL 429 (689)
Q Consensus 354 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al 429 (689)
+..+.++.+..++ +++...++..-....-.+.|..++.+-+...|+--..+..+..-... -|...+.+..++..+
T Consensus 269 ~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 269 LNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 9999999998766 45556677777777788999999999999999854333333322222 233555555555544
No 78
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.80 E-value=3.7e-17 Score=166.77 Aligned_cols=245 Identities=23% Similarity=0.316 Sum_probs=206.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-
Q 005594 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN- 257 (689)
Q Consensus 187 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~- 257 (689)
.|....+...++..|..+|++++|+..++++++. .|.-......+|.+|..++++.+|+..|++++.+...
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 5666777888999999999999999999999987 5555566667999999999999999999999987431
Q ss_pred cHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005594 258 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--------HYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 329 (689)
Q Consensus 258 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 329 (689)
....+...+.++.+++..|...|++++|..++++++++.. .-...+.+++.++..++++++|+.++++++++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 1122335678888999999999999999999999997642 23456888999999999999999999999987
Q ss_pred --------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005594 330 --------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK--------PNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393 (689)
Q Consensus 330 --------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 393 (689)
++.-+..+.++|.+|..+|++++|.++|++++.+. +.....+.++|..|.+.+++.+|...|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 22447789999999999999999999999999874 22355889999999999999999999999
Q ss_pred HHHh-------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594 394 AIAA-------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (689)
Q Consensus 394 al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (689)
+..+ .|+....+.+|+.+|..+|++++|.++.++++..
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 8876 3455678999999999999999999999998853
No 79
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.80 E-value=4.9e-17 Score=156.61 Aligned_cols=202 Identities=26% Similarity=0.293 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHH
Q 005594 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (689)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 270 (689)
...+..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|++.++++++..|.+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------------ 98 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN------------ 98 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------------
Confidence 56677777777777777777777777777777777777777777777777777777776666665554
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcC
Q 005594 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN--PHCAEACNNLGVIYKDRD 348 (689)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g 348 (689)
...+..+|.++...|++++|+..+++++... +.....+..+|.++...|
T Consensus 99 -----------------------------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 149 (234)
T TIGR02521 99 -----------------------------GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAG 149 (234)
T ss_pred -----------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcC
Confidence 4445555666666666666666666666542 344566777777777777
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (689)
Q Consensus 349 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (689)
++++|...++++++.+|++..++..+|.++...|++++|...++++++..|.++..+..++.++...|+.++|..+.+.+
T Consensus 150 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 150 DFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred CHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77778887877777777777777777888888888888888888777777777777777777777888888887777766
Q ss_pred HhcCC
Q 005594 429 LKIDP 433 (689)
Q Consensus 429 l~~~p 433 (689)
....|
T Consensus 230 ~~~~~ 234 (234)
T TIGR02521 230 QKLFP 234 (234)
T ss_pred HhhCc
Confidence 65543
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.79 E-value=1.1e-16 Score=163.41 Aligned_cols=240 Identities=25% Similarity=0.347 Sum_probs=203.6
Q ss_pred HHHHHhHHHHHHcCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Q 005594 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------R 221 (689)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~ 221 (689)
.+...++..|..+|++++|+..++++++. .|.-......+|.+|..++++.+|+..|++++.+ +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34666999999999999999999999988 4555566667999999999999999999999975 4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhC----
Q 005594 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN-FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN---- 296 (689)
Q Consensus 222 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---- 296 (689)
|..+.++.+||.+|...|++++|..++++++++... .......++..+..++.++..++++++|..++++++++.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 455778999999999999999999999999987543 112233456677888888889999999999999998763
Q ss_pred ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Q 005594 297 ----WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN--------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSI- 363 (689)
Q Consensus 297 ----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~- 363 (689)
+..+..+.++|.+|..+|++++|.+++++++.+. +.....+..+|..+.+.+++.+|.+.|.++..+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 2335689999999999999999999999999873 334678899999999999999999999998866
Q ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005594 364 ------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (689)
Q Consensus 364 ------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (689)
.|+....+.+|+.+|..+|++++|+++.++++..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3445668999999999999999999999999854
No 81
>PLN02789 farnesyltranstransferase
Probab=99.79 E-value=7.5e-17 Score=158.02 Aligned_cols=210 Identities=12% Similarity=0.060 Sum_probs=168.6
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhc
Q 005594 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279 (689)
Q Consensus 201 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~ 279 (689)
+...+++++|+..+.++++++|.+..+|...+.++..+| ++++++..++++++.+|++..++...+.++..++.
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~----- 121 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGP----- 121 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCc-----
Confidence 344566777788888888888888888888888877777 56788888888888888877777777666655541
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCH----HH
Q 005594 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR---DNL----DK 352 (689)
Q Consensus 280 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~----~~ 352 (689)
...++++.+++++++.+|++..+|...+.++...|++++|++.+.++++.+|.+..+|+.++.++... |.+ ++
T Consensus 122 ~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 122 DAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHH
Confidence 12366788888888888888899999999999999999999999999999999999999988887765 222 57
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 005594 353 AVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (689)
Q Consensus 353 A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (689)
++++..+++.++|++..+|..++.++.. .++..+|++.+.+++...|++..++..|+.+|...
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 8888889999999999999999999887 45567798999998888899999999999998763
No 82
>PLN02789 farnesyltranstransferase
Probab=99.76 E-value=5.6e-16 Score=151.92 Aligned_cols=210 Identities=11% Similarity=0.020 Sum_probs=126.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-
Q 005594 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG-NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY- 207 (689)
Q Consensus 130 g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~- 207 (689)
++.++|+..+.++++++|++..++.. .+.++...| ++++++..++++++.+|++..+|...+.++...|+.
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~-------R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHF-------RRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHH-------HHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchh
Confidence 34445555555555555555444222 222222333 345555566666666666666666666555555542
Q ss_pred -HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHH
Q 005594 208 -DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286 (689)
Q Consensus 208 -~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 286 (689)
++++.+++++++.+|.+..+|..++.++...|+++++++.+.++++.+|.+..++...+.++..++.........++++
T Consensus 124 ~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 124 ANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 4556666666666666666666666666666666666666666666666666666666555544321100111245677
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 005594 287 AYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (689)
Q Consensus 287 ~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 346 (689)
.+..+++..+|++..+|..++.++.. .++..+|+..+.+++...|.++.++..++.++..
T Consensus 204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 204 KYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 77778888888888888888887776 3445667777777777777777777777777764
No 83
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=1.2e-14 Score=134.93 Aligned_cols=385 Identities=16% Similarity=0.131 Sum_probs=218.1
Q ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCH-HHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Q 005594 56 NILRSRNKFVDALALYEIVLEKDSGNV-EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134 (689)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 134 (689)
.-++.+.+|..|+.+++-.+..+.+.. ..-..+|.|++.+|+|++|+..|+-+.+.+.-+.+.+.+++.+++-.|.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 345678899999999988776544333 5667789999999999999999999888777778899999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005594 135 AAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 214 (689)
Q Consensus 135 A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 214 (689)
|.....++ |+++-... +++.++ .+.++-++-. .|...++ +..+-...++.+.+..-.|++|++.|
T Consensus 110 A~~~~~ka----~k~pL~~R----Llfhla---hklndEk~~~-~fh~~Lq---D~~EdqLSLAsvhYmR~HYQeAIdvY 174 (557)
T KOG3785|consen 110 AKSIAEKA----PKTPLCIR----LLFHLA---HKLNDEKRIL-TFHSSLQ---DTLEDQLSLASVHYMRMHYQEAIDVY 174 (557)
T ss_pred HHHHHhhC----CCChHHHH----HHHHHH---HHhCcHHHHH-HHHHHHh---hhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 98776654 44333211 122221 2223322222 2222221 11233455556666666666666666
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhh-----------hcCCHH
Q 005594 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK-----------LEGDIN 283 (689)
Q Consensus 215 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~ 283 (689)
++.+..+|+....-..++.+|.++.-++-+.+.+.-.++..|++..+....+..++++-.-.. ....+.
T Consensus 175 krvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~ 254 (557)
T KOG3785|consen 175 KRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP 254 (557)
T ss_pred HHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch
Confidence 666666666666666666666666666666666666666666666555544444433211000 000111
Q ss_pred HHHHHHHH----------HHhhCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 005594 284 QGVAYYKK----------ALYYNWH----YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 349 (689)
Q Consensus 284 ~A~~~~~~----------al~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 349 (689)
.+..+++. +++.-|. .+++..++...|..+++..+|+...+ .++|..+.-+...|.++...|+
T Consensus 255 f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQ 331 (557)
T KOG3785|consen 255 FIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQ 331 (557)
T ss_pred hHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhh
Confidence 12111111 1111121 24566677777777777777766554 3466666666666666666665
Q ss_pred HHHHHHHHHHHH---hc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 005594 350 LDKAVECYQMAL---SI------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420 (689)
Q Consensus 350 ~~~A~~~~~~al---~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 420 (689)
--...+.++-|- .+ .-+...-...++.+++-..++++-+.++...-...-++-...+++++++...|++.+
T Consensus 332 e~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~e 411 (557)
T KOG3785|consen 332 ETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVE 411 (557)
T ss_pred hcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHH
Confidence 433333333222 11 111122334455555555666666666665555555555666666666666666666
Q ss_pred HHHHHHHHHhcCCCChhhHhhHHHHhhhccCCChHHHHH
Q 005594 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFE 459 (689)
Q Consensus 421 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (689)
|.+.|-+.-..+-.+. .....+++.+|+..+.++-+|+
T Consensus 412 aEelf~~is~~~ikn~-~~Y~s~LArCyi~nkkP~lAW~ 449 (557)
T KOG3785|consen 412 AEELFIRISGPEIKNK-ILYKSMLARCYIRNKKPQLAWD 449 (557)
T ss_pred HHHHHhhhcChhhhhh-HHHHHHHHHHHHhcCCchHHHH
Confidence 6666655543322222 2222345556665555444433
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.75 E-value=8.4e-15 Score=150.65 Aligned_cols=210 Identities=17% Similarity=0.053 Sum_probs=144.4
Q ss_pred CCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 005594 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAE 154 (689)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 154 (689)
+|+.+.++..+|..+...|+.+++.+.+.++.+..|.+ .+.....+.++...|++++|...++++++.+|++.....
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 68888888888888888888888888888887776644 445667788888888888888888888888888765432
Q ss_pred HHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005594 155 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234 (689)
Q Consensus 155 ~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 234 (689)
. +..+..++ ...+....+.+.+......+|.....+..+|.++..+|++++|+..++++++..|++..++..+|.+
T Consensus 82 ~-~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i 157 (355)
T cd05804 82 L-HLGAFGLG---DFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHV 157 (355)
T ss_pred H-hHHHHHhc---ccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 2 11122221 1234444455444443345666677777888888888888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHh
Q 005594 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294 (689)
Q Consensus 235 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 294 (689)
+...|++++|+..+++++...|..... ....+..++.++...|++++|+..+++++.
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~---~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSML---RGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcch---hHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 888888888888888888877642211 112233334444444555555555555443
No 85
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=1.6e-14 Score=134.22 Aligned_cols=361 Identities=13% Similarity=0.026 Sum_probs=269.4
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 005594 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (689)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (689)
...+..|.+++..|+|++|+..|+-+.+.+..+.+.+.+++.|++-+|.|.+|...-.+ .|+++-....+-.+..+
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k----a~k~pL~~RLlfhlahk 133 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK----APKTPLCIRLLFHLAHK 133 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh----CCCChHHHHHHHHHHHH
Confidence 44567899999999999999999999988777889999999999999999999876655 46777666666666667
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 005594 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD 208 (689)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 208 (689)
.++-++-...-+ .+.-.. +. ...++.+.+..-.|++|++.|.+++..+|+....-..++.||+++.-|+
T Consensus 134 lndEk~~~~fh~-~LqD~~---Ed-------qLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYyd 202 (557)
T KOG3785|consen 134 LNDEKRILTFHS-SLQDTL---ED-------QLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYD 202 (557)
T ss_pred hCcHHHHHHHHH-HHhhhH---HH-------HHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhh
Confidence 777555444333 332111 11 4456666777788999999999999999999888899999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------------------Cc-------HHHHh
Q 005594 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP------------------NF-------EIAKN 263 (689)
Q Consensus 209 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------------------~~-------~~~~~ 263 (689)
-+.+.+.-.+...|++.-+...++....+.=+-..|..-.+....... +. +....
T Consensus 203 vsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~ 282 (557)
T KOG3785|consen 203 VSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMK 282 (557)
T ss_pred hHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHh
Confidence 999999999999999988888887776664332223322222221100 00 11122
Q ss_pred hHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---hhC------CCCH
Q 005594 264 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF---HFN------PHCA 334 (689)
Q Consensus 264 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~------p~~~ 334 (689)
.+..+-.++...|..+++..+|+.+.+. ++|..+.-+...|.+....|+--...+.++-+- .+- -+..
T Consensus 283 ~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTI 359 (557)
T KOG3785|consen 283 HIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTI 359 (557)
T ss_pred hChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccc
Confidence 2233445566677889999999988764 689999999999999999887554444444332 221 2233
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Q 005594 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN-PTYAEAYNNLGVLYR 413 (689)
Q Consensus 335 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 413 (689)
.....++.+++-..++++.+.++...-...-++....++++.++...|++.+|.+.|-+.-... .+.......|++||.
T Consensus 360 pGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi 439 (557)
T KOG3785|consen 360 PGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYI 439 (557)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHH
Confidence 4556778888888999999999998888888889999999999999999999999997765444 233445567999999
Q ss_pred HcCCHHHHHHHHHH
Q 005594 414 DAGSISLAIDAYEQ 427 (689)
Q Consensus 414 ~~g~~~~A~~~~~~ 427 (689)
+.|+.+-|.+.+-+
T Consensus 440 ~nkkP~lAW~~~lk 453 (557)
T KOG3785|consen 440 RNKKPQLAWDMMLK 453 (557)
T ss_pred hcCCchHHHHHHHh
Confidence 99999999887754
No 86
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=1.6e-13 Score=132.36 Aligned_cols=349 Identities=15% Similarity=0.142 Sum_probs=221.6
Q ss_pred HHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005594 70 LYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSY 149 (689)
Q Consensus 70 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 149 (689)
-|+..+..+.-+...|...|.--..++++..|...|+++|..+..+...|...+.+-.+......|...+.+++.+-|.-
T Consensus 61 efEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV 140 (677)
T KOG1915|consen 61 EFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV 140 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH
Confidence 45555666666778899999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005594 150 KPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229 (689)
Q Consensus 150 ~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 229 (689)
... ++....+-...|+...|.+.|++-++..|+ ..+|......-.+.+..+.|...|++-+-.+|+ ...|.
T Consensus 141 dql-------WyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wi 211 (677)
T KOG1915|consen 141 DQL-------WYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWI 211 (677)
T ss_pred HHH-------HHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHH
Confidence 665 555555556678888999999998888876 456666666666666777777777776666654 45566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHH----------------------
Q 005594 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA---------------------- 287 (689)
Q Consensus 230 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~---------------------- 287 (689)
..+..-.+.|+..-|...|+++++...++...-. .+...+.....++.++.|..
T Consensus 212 kyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~----lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~ 287 (677)
T KOG1915|consen 212 KYARFEEKHGNVALARSVYERAIEFLGDDEEAEI----LFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYT 287 (677)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 6666666666666666666666655443221110 00111111111111111111
Q ss_pred ----------------------HHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH---------HH
Q 005594 288 ----------------------YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA---------EA 336 (689)
Q Consensus 288 ----------------------~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~ 336 (689)
.|++.+..+|-+.++|+..-.+....|+.+.-.+.|++++...|... ..
T Consensus 288 ~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYL 367 (677)
T KOG1915|consen 288 AFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYL 367 (677)
T ss_pred HHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHH
Confidence 23444444666666666666666666776666677776666554321 11
Q ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHH---------------------------------H
Q 005594 337 CNNLGV-IYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVV---------------------------------Y 378 (689)
Q Consensus 337 ~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~---------------------------------~ 378 (689)
|.+.+. .-....+.+.+.+.|+.++++-|.. +..|...|.. -
T Consensus 368 WinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelE 447 (677)
T KOG1915|consen 368 WINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELE 447 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHH
Confidence 222211 1123445555555555555554432 2233333333 3
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594 379 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (689)
Q Consensus 379 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (689)
.++++++...++|++.++..|.+..+|...|.+-..+|+.+.|...|+-|+..
T Consensus 448 lqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 448 LQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 44555666666666666666666666666666666666666666666666654
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.73 E-value=1.5e-14 Score=148.77 Aligned_cols=309 Identities=15% Similarity=0.076 Sum_probs=229.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 005594 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA 191 (689)
Q Consensus 112 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 191 (689)
+|+.+.++..+|.++...|+.+++...+.++.+..+.+.... ......+..+...|++++|...++++++.+|++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~ 77 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATER----ERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL 77 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 799999999999999999999999999999998888665432 2244567788899999999999999999999998
Q ss_pred HHHHHHHHHHHHcCCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHH
Q 005594 192 PAYYNLGVVYSELMQY----DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267 (689)
Q Consensus 192 ~~~~~la~~~~~~g~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 267 (689)
.++.. +..+...|++ ..+.+.+.......|........+|.++...|++++|+..++++++..|++...+..
T Consensus 78 ~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~--- 153 (355)
T cd05804 78 LALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHA--- 153 (355)
T ss_pred HHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHH---
Confidence 87775 5555555544 444444444335667778888899999999999999999999999999998655444
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHH---
Q 005594 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA----DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH--CAEACN--- 338 (689)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~--- 338 (689)
++.++...|++++|+.++++++...|..+ ..+..++.++...|++++|+..|++++...|. ......
T Consensus 154 ----la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 229 (355)
T cd05804 154 ----VAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAA 229 (355)
T ss_pred ----HHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHH
Confidence 44555557899999999999999877433 34668999999999999999999999876662 222111
Q ss_pred HHHHHHHHcCCHHHHHHH--H-HHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------cHHH
Q 005594 339 NLGVIYKDRDNLDKAVEC--Y-QMALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT---------YAEA 404 (689)
Q Consensus 339 ~la~~~~~~g~~~~A~~~--~-~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~ 404 (689)
.+...+...|....+..+ + .......+. ........+.++...|+.++|...++........ ...+
T Consensus 230 ~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~ 309 (355)
T cd05804 230 SLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGL 309 (355)
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhH
Confidence 222233334433333222 1 111111121 2233346888888999999999999887664322 2456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005594 405 YNNLGVLYRDAGSISLAIDAYEQCLKID 432 (689)
Q Consensus 405 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (689)
....+.++...|++++|.+.+..++.+-
T Consensus 310 ~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 310 PLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999765
No 88
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.71 E-value=4.1e-14 Score=152.31 Aligned_cols=161 Identities=12% Similarity=0.056 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005594 283 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 362 (689)
Q Consensus 283 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 362 (689)
.+++.-........|.+.+++.+||.+....|.+++|...++.++++.|++..++.+++.++.+.+++++|+..+++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 34444444445567889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhH
Q 005594 363 IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (689)
Q Consensus 363 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (689)
.+|+++.+++.+|.++.+.|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+-.....++
T Consensus 149 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 149 GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988776665555
Q ss_pred H
Q 005594 443 L 443 (689)
Q Consensus 443 ~ 443 (689)
+
T Consensus 229 ~ 229 (694)
T PRK15179 229 L 229 (694)
T ss_pred H
Confidence 4
No 89
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.69 E-value=5.4e-15 Score=142.05 Aligned_cols=191 Identities=14% Similarity=0.115 Sum_probs=158.4
Q ss_pred ccccCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH---HHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHH-
Q 005594 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNV---EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC- 117 (689)
Q Consensus 42 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~- 117 (689)
+.....++.++.+|..++..|++++|+..|+++++.+|+++ .+++.+|.++...|++++|+..|+++++..|+++.
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 45567888999999999999999999999999999999876 68899999999999999999999999999998776
Q ss_pred --HHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhC
Q 005594 118 --AHTHCGILYKDE--------GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID 187 (689)
Q Consensus 118 --~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 187 (689)
+++.+|.++... |++++|++.+++++..+|++......+ ..++.... .
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~----~~~~~~~~-------~----------- 164 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK----KRMDYLRN-------R----------- 164 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH----HHHHHHHH-------H-----------
Confidence 789999999876 889999999999999999986653222 11111110 0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005594 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (689)
Q Consensus 188 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 256 (689)
.......+|.++...|++.+|+..++++++..|+ .+.+++.+|.++...|++++|..+++.+....|
T Consensus 165 --~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 165 --LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred --HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 0123457888899999999999999999988665 457899999999999999999998888776655
No 90
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.68 E-value=1.3e-12 Score=124.33 Aligned_cols=298 Identities=14% Similarity=0.058 Sum_probs=203.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Q 005594 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVY 201 (689)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~ 201 (689)
|..-...|+|.+|.+...+.-+..+...-+ +..-+....+.|+.+.+-.++.++-+..++ ...+....+.+.
T Consensus 91 gl~~l~eG~~~qAEkl~~rnae~~e~p~l~-------~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 91 GLLKLFEGDFQQAEKLLRRNAEHGEQPVLA-------YLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHhhhcCcchHHH-------HHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 344455667777777666655554443222 444455556667777777777776666322 345556666777
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH-HHHhhHHHHHHHhhhhhhhcC
Q 005594 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE-IAKNNMAIALTDLGTKVKLEG 280 (689)
Q Consensus 202 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~l~~~~~~~~ 280 (689)
...|++..|.....++++..|.++.+......+|...|++.+...++.+.-+..--+. +....--.++..+-+-....+
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 7777777777777777777777777777777777777777777776666554432211 111111111111111111111
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360 (689)
Q Consensus 281 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 360 (689)
..+.-..+++..-..-..++.....++.-+...|+.++|.+..+.+++..-+.. ....++ ...-++...=++..++.
T Consensus 244 ~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~ 320 (400)
T COG3071 244 GSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKW 320 (400)
T ss_pred cchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHH
Confidence 222222344444444445678888999999999999999999999998865433 222222 24567889999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (689)
Q Consensus 361 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (689)
++..|+++..+..||.++.+.+.|.+|..+|+.+++..|+ ...+..+|.++.++|+..+|.+.+++++.+
T Consensus 321 l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 321 LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887 778899999999999999999999999854
No 91
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.67 E-value=9.9e-13 Score=136.52 Aligned_cols=248 Identities=16% Similarity=0.093 Sum_probs=153.2
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005594 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (689)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (689)
.+.++-.+.++...|++++|++.+++....-.+....+-.+|.++..+|++++|...|...++.+|++...+..+..+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 46678889999999999999999999888888889999999999999999999999999999999999999988888873
Q ss_pred HcC-----CHHHHHHHHHHHHhcCCCCHHHHH------------HHHH-------------HHHHhHHHHHHcCChHHHH
Q 005594 128 DEG-----RLVEAAESYHKALSADPSYKPAAE------------CLAI-------------VLTDLGTSLKLAGNTQDGI 177 (689)
Q Consensus 128 ~~g-----~~~~A~~~~~~al~~~p~~~~~~~------------~~a~-------------~~~~l~~~~~~~~~~~~A~ 177 (689)
... +.+.-...|++.....|....... ..+. ++..+-..|....+..-..
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHH
Confidence 332 456667777777666665321100 0000 0111111111111111111
Q ss_pred HHHHHHHhh---------------CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005594 178 QKYYEALKI---------------DPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (689)
Q Consensus 178 ~~~~~al~~---------------~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 240 (689)
.++...... .|.. ..+++.+++.|...|++++|+++++++++..|..++.+...|.++...|+
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC
Confidence 111111110 0000 12345555555556666666666666666666656666666666666666
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHh------------------------------------hHHHHHHHhhhhhhhcCCHHH
Q 005594 241 LESAIACYERCLAVSPNFEIAKN------------------------------------NMAIALTDLGTKVKLEGDINQ 284 (689)
Q Consensus 241 ~~~A~~~~~~al~~~~~~~~~~~------------------------------------~~~~~~~~l~~~~~~~~~~~~ 284 (689)
+.+|.+.++.+..++..+..... .........|..+.+.|++..
T Consensus 244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 66666655555555443322111 222334556677777888888
Q ss_pred HHHHHHHHHhh
Q 005594 285 GVAYYKKALYY 295 (689)
Q Consensus 285 A~~~~~~al~~ 295 (689)
|+..|..+.+.
T Consensus 324 ALk~~~~v~k~ 334 (517)
T PF12569_consen 324 ALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHH
Confidence 88887777655
No 92
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1e-12 Score=130.62 Aligned_cols=207 Identities=15% Similarity=0.088 Sum_probs=166.0
Q ss_pred HHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 005594 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL 163 (689)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l 163 (689)
.++.--..+...++|++|.+...+++...|++..+....-.++.+.++|++|+...++-......+. ..+..
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~--------~~fEK 85 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS--------FFFEK 85 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch--------hhHHH
Confidence 3444444566789999999999999999999999999999999999999999965554332111111 12577
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------
Q 005594 164 GTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER---------------------- 221 (689)
Q Consensus 164 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------------- 221 (689)
+.|.++.+..++|+..++ ..++.+..+....|++++++|+|++|+..|+..++.+
T Consensus 86 AYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~ 162 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ 162 (652)
T ss_pred HHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH
Confidence 888999999999999998 4566667788899999999999999999999985422
Q ss_pred --------C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHHHHhhHHHHHHHhhhhhhhcCCHHH
Q 005594 222 --------P-MYAEAYCNMGVIYKNRGDLESAIACYERCLAV--------SPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (689)
Q Consensus 222 --------p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (689)
| ++.+.+++.+.++...|+|.+|++.+++++.+ +.+..+....+..+...++.++...|+.++
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 1 24567899999999999999999999999543 233355666777788888888999999999
Q ss_pred HHHHHHHHHhhCCCCHH
Q 005594 285 GVAYYKKALYYNWHYAD 301 (689)
Q Consensus 285 A~~~~~~al~~~~~~~~ 301 (689)
|..+|...++.++.+..
T Consensus 243 a~~iy~~~i~~~~~D~~ 259 (652)
T KOG2376|consen 243 ASSIYVDIIKRNPADEP 259 (652)
T ss_pred HHHHHHHHHHhcCCCch
Confidence 99999999998877653
No 93
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.66 E-value=4.6e-15 Score=140.33 Aligned_cols=293 Identities=22% Similarity=0.274 Sum_probs=189.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhh------CCCCHHHHH
Q 005594 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPHYAPAYY 195 (689)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~ 195 (689)
-|.-++++|+....+..|+.+++...++... +..+|..+|..|+..++|++|+++...-+.+ .-..+..--
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvGTeDl~t---LSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssg 99 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVGTEDLST---LSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSG 99 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhcchHHHH---HHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccc
Confidence 3566778888888888888888887665443 5667888888888888888888875443322 222345566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCC--------------------HHHHHHHHH
Q 005594 196 NLGVVYSELMQYDTALGCYEKAALERP------MYAEAYCNMGVIYKNRGD--------------------LESAIACYE 249 (689)
Q Consensus 196 ~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~ 249 (689)
+||..+.-+|.|++|+.+..+-+.+.. ....+++++|.+|...|+ ++.|.++|.
T Consensus 100 NLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~ 179 (639)
T KOG1130|consen 100 NLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM 179 (639)
T ss_pred cccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH
Confidence 788889999999999888877765432 246788899999888764 233444444
Q ss_pred HHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCCHHHHHHHH
Q 005594 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY------ADAMYNLGVAYGEMLKFDMAIVFY 323 (689)
Q Consensus 250 ~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~ 323 (689)
.-+++..+.. .....+.++-++|+.|...|+++.|+..-+.-+.+.... -.++.++|.++.-.|+++.|+++|
T Consensus 180 eNL~l~~~lg-Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehY 258 (639)
T KOG1130|consen 180 ENLELSEKLG-DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHY 258 (639)
T ss_pred HHHHHHHHhh-hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHH
Confidence 4444433222 223345667777777777788888877776666554332 236667777777777777777777
Q ss_pred HHHHhhC----C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHH
Q 005594 324 ELAFHFN----P--HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN------FSQSLNNLGVVYTVQGKMDAAAEMI 391 (689)
Q Consensus 324 ~~al~~~----p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~ 391 (689)
++.+.+. . ..+...+.+|..|.-..++++|+.++++-+.+..+ ...+++.||..+...|..++|+.+.
T Consensus 259 K~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fa 338 (639)
T KOG1130|consen 259 KLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFA 338 (639)
T ss_pred HHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 7665441 1 12445566777777777777777777766655322 2346666777777777777777666
Q ss_pred HHHHHhC-----CC-cHHHHHHHHHHHHHcCCH
Q 005594 392 EKAIAAN-----PT-YAEAYNNLGVLYRDAGSI 418 (689)
Q Consensus 392 ~~al~~~-----p~-~~~~~~~la~~~~~~g~~ 418 (689)
++.+++. +. ...+..++...-..+|..
T Consensus 339 e~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ 371 (639)
T KOG1130|consen 339 ELHLRSSLEVNDTSGELTARDNLSDLILELGQE 371 (639)
T ss_pred HHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCC
Confidence 6665542 11 233445555555555543
No 94
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.64 E-value=5.2e-12 Score=120.40 Aligned_cols=297 Identities=14% Similarity=0.015 Sum_probs=194.9
Q ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHH
Q 005594 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ-NACAHTHCGIL 125 (689)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 125 (689)
.+......|..-+..|+|.+|.+...+.-+..+....++..-+.+.-++|+++.|-.++.++-+..++ .......++.+
T Consensus 83 ra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarl 162 (400)
T COG3071 83 RARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARL 162 (400)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 35566677888888999999999999988877777788888899999999999999999999998444 45678889999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHH---HHHHHHH--H
Q 005594 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP---AYYNLGV--V 200 (689)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~la~--~ 200 (689)
....|+++.|..-..++++..|.++.. +.....+|...|++.+...++.+.-+..--+.+ -+-+.+. +
T Consensus 163 ll~~~d~~aA~~~v~~ll~~~pr~~~v-------lrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~gl 235 (400)
T COG3071 163 LLNRRDYPAARENVDQLLEMTPRHPEV-------LRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGL 235 (400)
T ss_pred HHhCCCchhHHHHHHHHHHhCcCChHH-------HHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999887 555566777889999999988887765432221 1111111 1
Q ss_pred HHHcCCHHHH---HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhh
Q 005594 201 YSELMQYDTA---LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277 (689)
Q Consensus 201 ~~~~g~~~~A---~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~ 277 (689)
+.+.++-..+ ..+.+..-..-..++.....++.-+...|+.++|.+..+.+++..-+.. +...+-. .
T Consensus 236 L~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-----L~~~~~~-----l 305 (400)
T COG3071 236 LQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-----LCRLIPR-----L 305 (400)
T ss_pred HHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-----HHHHHhh-----c
Confidence 1122222222 2233333333345577777788888888888888888888887654432 1111111 1
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005594 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357 (689)
Q Consensus 278 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 357 (689)
.-++...-++..++.++..|+++..+..+|.++.+.+.|.+|..+++.+++..|+ ...+..+|.++.++|+..+|.+.+
T Consensus 306 ~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r 384 (400)
T COG3071 306 RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVR 384 (400)
T ss_pred CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHH
Confidence 1344445555555555555555555555555555555555555555555544443 334444555555555555555555
Q ss_pred HHHH
Q 005594 358 QMAL 361 (689)
Q Consensus 358 ~~al 361 (689)
++++
T Consensus 385 ~e~L 388 (400)
T COG3071 385 REAL 388 (400)
T ss_pred HHHH
Confidence 5444
No 95
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.63 E-value=1.7e-13 Score=148.16 Aligned_cols=290 Identities=13% Similarity=0.089 Sum_probs=226.1
Q ss_pred hCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 005594 77 KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156 (689)
Q Consensus 77 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 156 (689)
.+|.+..++..+...+...+++++|++.++.+++..|+...+++.+|.++.+.+++.++... .++...+.+
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~------- 96 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN------- 96 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc-------
Confidence 47888999999999999999999999999999999999999999999999999998877766 555554443
Q ss_pred HHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005594 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236 (689)
Q Consensus 157 a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 236 (689)
.++ .+++++...+...+.+..+++.+|.||-++|+.++|...++++++.+|+++.++.++|..|.
T Consensus 97 --------------~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~a 161 (906)
T PRK14720 97 --------------LKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYE 161 (906)
T ss_pred --------------cch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 334 55566666666678888899999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCH
Q 005594 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF 316 (689)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 316 (689)
.. +.++|++++.+++.. +...+++.++.+++.+.+..+|.+.+.+..+-......-.+
T Consensus 162 e~-dL~KA~~m~~KAV~~---------------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~ 219 (906)
T PRK14720 162 EE-DKEKAITYLKKAIYR---------------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREF 219 (906)
T ss_pred Hh-hHHHHHHHHHHHHHH---------------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhcc
Confidence 99 999999999999865 12245889999999999999998877655443332222112
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005594 317 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396 (689)
Q Consensus 317 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 396 (689)
..+ ...+.-+-..|...++|++++.+++.+++.+|.+..+...++.+|. +.|.. ...++..++
T Consensus 220 ~~~--------------~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~ 282 (906)
T PRK14720 220 TRL--------------VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLK 282 (906)
T ss_pred chh--------------HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHH
Confidence 222 3445556677788889999999999999999999999999999887 33333 444444444
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHh
Q 005594 397 ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440 (689)
Q Consensus 397 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 440 (689)
+. .+-....++..|+..|++.+..++.+--.+.
T Consensus 283 ~s-----------~l~~~~~~~~~~i~~fek~i~f~~G~yv~H~ 315 (906)
T PRK14720 283 MS-----------DIGNNRKPVKDCIADFEKNIVFDTGNFVYHR 315 (906)
T ss_pred Hh-----------ccccCCccHHHHHHHHHHHeeecCCCEEEEc
Confidence 32 2222224668889999999988887755443
No 96
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.63 E-value=8.6e-15 Score=127.11 Aligned_cols=120 Identities=14% Similarity=0.164 Sum_probs=76.4
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005594 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (689)
Q Consensus 321 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (689)
..++++++.+|++ +..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|+++++++|+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4455556655553 4455666666666666666666666666666666666666666666666666666666666666
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHH
Q 005594 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 443 (689)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 443 (689)
++.+++++|.++..+|++++|+..|++++++.|+++..+.++.
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~ 133 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQ 133 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 6666666666666666666666666666666666666555443
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.63 E-value=3.2e-12 Score=148.49 Aligned_cols=385 Identities=12% Similarity=-0.014 Sum_probs=274.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHc
Q 005594 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV-KLDPQNACAHTHCGILYKDE 129 (689)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~ 129 (689)
....|..+...|++.+|+..+..+-.. +.-.......+..+...|++..+...+..+- .....++......+.++...
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~ 422 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQ 422 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHC
Confidence 345567788899999988766554111 1112345556777778888887777665431 11123445567778888999
Q ss_pred CCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHH
Q 005594 130 GRLVEAAESYHKALSADPSYK--PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAYYNLGVVYS 202 (689)
Q Consensus 130 g~~~~A~~~~~~al~~~p~~~--~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~ 202 (689)
|++++|...+..+....+... ......+.+...++.++...|++++|...+++++...+.. ..+...+|.++.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 999999999998876533211 0111123445557888899999999999999999854432 235677899999
Q ss_pred HcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH-HHhhHHHHHHHhhhh
Q 005594 203 ELMQYDTALGCYEKAALERPM------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI-AKNNMAIALTDLGTK 275 (689)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~l~~~ 275 (689)
..|++++|...+++++..... ...++..+|.++...|++++|...+++++........ ........+..++.+
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 582 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL 582 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 999999999999999875332 1346678899999999999999999999886432110 001112234456777
Q ss_pred hhhcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHH----HHHHHH
Q 005594 276 VKLEGDINQGVAYYKKALYYNWH-----YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEAC----NNLGVI 343 (689)
Q Consensus 276 ~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~----~~la~~ 343 (689)
+...|++++|...+.+++..... ....+..++.++...|++++|...+.++..+.... .... ......
T Consensus 583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 662 (903)
T PRK04841 583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIY 662 (903)
T ss_pred HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHH
Confidence 77889999999999999875332 24456778999999999999999999997763321 1111 112344
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHH
Q 005594 344 YKDRDNLDKAVECYQMALSIKPNFSQ----SLNNLGVVYTVQGKMDAAAEMIEKAIAANP------TYAEAYNNLGVLYR 413 (689)
Q Consensus 344 ~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~ 413 (689)
+...|+.+.|..++.......+.... .+..++.++...|++++|...+++++.... ....++..+|.++.
T Consensus 663 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~ 742 (903)
T PRK04841 663 WQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYW 742 (903)
T ss_pred HHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 55689999999998776653322221 256889999999999999999999988621 23567889999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCh
Q 005594 414 DAGSISLAIDAYEQCLKIDPDSR 436 (689)
Q Consensus 414 ~~g~~~~A~~~~~~al~~~p~~~ 436 (689)
..|+.++|...+++++++.....
T Consensus 743 ~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 743 QQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HcCCHHHHHHHHHHHHHHhCccc
Confidence 99999999999999999876543
No 98
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.62 E-value=7.4e-14 Score=134.18 Aligned_cols=182 Identities=16% Similarity=0.072 Sum_probs=145.9
Q ss_pred hCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 005594 77 KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAA 153 (689)
Q Consensus 77 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 153 (689)
.++..+..++.+|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..++++++..|++....
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 3455788999999999999999999999999999999876 5789999999999999999999999999999877642
Q ss_pred HHHHHHHHHhHHHHHHc--------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005594 154 ECLAIVLTDLGTSLKLA--------GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225 (689)
Q Consensus 154 ~~~a~~~~~l~~~~~~~--------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 225 (689)
.+++.+|.++... |++++|++.+++++..+|++..++..+..+....+ . ..
T Consensus 108 ----~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~-------------~~ 166 (235)
T TIGR03302 108 ----YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----R-------------LA 166 (235)
T ss_pred ----HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----H-------------HH
Confidence 2356666666654 78999999999999999998766543332221110 0 01
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHhhHHHHHHHhhhhhhhc
Q 005594 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNF---EIAKNNMAIALTDLGTKVKLE 279 (689)
Q Consensus 226 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~l~~~~~~~ 279 (689)
.....+|.++...|++.+|+..++++++..|+. ..++..++.++..+|+.....
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~ 223 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQ 223 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 234578899999999999999999999997764 578889999999988764433
No 99
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.62 E-value=1.5e-14 Score=125.67 Aligned_cols=127 Identities=17% Similarity=0.107 Sum_probs=119.8
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005594 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (689)
Q Consensus 286 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 365 (689)
...++++++.+|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46788899988874 667899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 005594 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (689)
Q Consensus 366 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (689)
+++.+++++|.++...|++++|+..|++++++.|+++..+.+++.+...+
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998876554
No 100
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.62 E-value=1.2e-14 Score=137.68 Aligned_cols=270 Identities=24% Similarity=0.302 Sum_probs=210.9
Q ss_pred HHhHHHHHHcCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHH
Q 005594 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHY----APAYYNLGVVYSELMQYDTALGCYEKAALE------RPMYAEAYCN 230 (689)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~ 230 (689)
..-|.-+.+.|+....+..|+.+++...++ ..+|..||.+|+.+++|++|+++-..-+.+ .-..+...-+
T Consensus 21 alEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgN 100 (639)
T KOG1130|consen 21 ALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGN 100 (639)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccc
Confidence 345677888999999999999999997776 346788999999999999999986543332 2334566778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCC--------------------HHHHHHHHH
Q 005594 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD--------------------INQGVAYYK 290 (689)
Q Consensus 231 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------------~~~A~~~~~ 290 (689)
+|.++.-+|.|++|+.+..+-+.+..... .....+.+++++|.+|...|+ ++.|.++|.
T Consensus 101 LGNtlKv~G~fdeA~~cc~rhLd~areLg-Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~ 179 (639)
T KOG1130|consen 101 LGNTLKVKGAFDEALTCCFRHLDFARELG-DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM 179 (639)
T ss_pred ccchhhhhcccchHHHHHHHHhHHHHHHh-HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH
Confidence 99999999999999999988877654322 233446677777777766553 345666666
Q ss_pred HHHhhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005594 291 KALYYNWHY------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH------CAEACNNLGVIYKDRDNLDKAVECYQ 358 (689)
Q Consensus 291 ~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~ 358 (689)
.-+++.... ..++-++|..|+-+|+|+.|+..-+.-+.+... .-.++.++|.++.-.|+++.|+++|+
T Consensus 180 eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK 259 (639)
T KOG1130|consen 180 ENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYK 259 (639)
T ss_pred HHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence 666554332 346788999999999999999998877766332 24688999999999999999999999
Q ss_pred HHHhcC----C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005594 359 MALSIK----P--NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP------TYAEAYNNLGVLYRDAGSISLAIDAYE 426 (689)
Q Consensus 359 ~al~~~----p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~ 426 (689)
+.+.+. . ..+...+.||..|.-..++++|+.++++-+.+.. ....+++.||..+..+|..++|+.+.+
T Consensus 260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 987652 2 2355788999999999999999999999877632 336789999999999999999999988
Q ss_pred HHHhc
Q 005594 427 QCLKI 431 (689)
Q Consensus 427 ~al~~ 431 (689)
+.+++
T Consensus 340 ~hl~~ 344 (639)
T KOG1130|consen 340 LHLRS 344 (639)
T ss_pred HHHHH
Confidence 88765
No 101
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=3.1e-12 Score=116.44 Aligned_cols=364 Identities=16% Similarity=0.127 Sum_probs=242.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Q 005594 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134 (689)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 134 (689)
...+.+..+|..|++++..-.+.+|.+...+..+|.||+...++..|.++|++.-...|......+..+..+++.+.+.+
T Consensus 17 iy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~AD 96 (459)
T KOG4340|consen 17 VYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYAD 96 (459)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHH
Confidence 34457889999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred HHHHHHHHHhc----------------CCCCH-HH---H-----HHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCC
Q 005594 135 AAESYHKALSA----------------DPSYK-PA---A-----ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189 (689)
Q Consensus 135 A~~~~~~al~~----------------~p~~~-~~---~-----~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 189 (689)
|+.....+... ..++. .. . ..-+....+.|.+.++.|+++.|++-|+.+++...-
T Consensus 97 ALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy 176 (459)
T KOG4340|consen 97 ALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY 176 (459)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCC
Confidence 98876554331 11100 00 0 001223556777788888888999989888888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC-------------------------HHHHHHHHHHHHHcCC
Q 005594 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALE----RPMY-------------------------AEAYCNMGVIYKNRGD 240 (689)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~-------------------------~~~~~~la~~~~~~g~ 240 (689)
++..-++++.++++.++++.|+++....++. .|.. .+++...+-++++.++
T Consensus 177 qpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n 256 (459)
T KOG4340|consen 177 QPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRN 256 (459)
T ss_pred CchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhccc
Confidence 8888888888888888988888887777653 3321 2456666778888888
Q ss_pred HHHHHHHHHHHHhcCCC--cHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHH
Q 005594 241 LESAIACYERCLAVSPN--FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM 318 (689)
Q Consensus 241 ~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~ 318 (689)
++.|.+.+...--.... ++....+++. .+ ..+++.+...-+.-.+.++|--.+...++-.+|.+..-|+-
T Consensus 257 ~eAA~eaLtDmPPRaE~elDPvTLHN~Al--~n------~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~l 328 (459)
T KOG4340|consen 257 YEAAQEALTDMPPRAEEELDPVTLHNQAL--MN------MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDL 328 (459)
T ss_pred HHHHHHHhhcCCCcccccCCchhhhHHHH--hc------ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhH
Confidence 88887765433211111 2222222222 11 13567777777777888888777888888888888877777
Q ss_pred HHHHHHHHHhhCCCC-----HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHHH--c---CCHHH
Q 005594 319 AIVFYELAFHFNPHC-----AEACNNLGVIY-KDRDNLDKAVECYQMALSIKPNFSQSLNNLG-VVYTV--Q---GKMDA 386 (689)
Q Consensus 319 A~~~~~~al~~~p~~-----~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~--~---g~~~~ 386 (689)
|...+-+ +|+. ....+.+-..+ ...-..++|.+-+.+.-+.- .+-+..++ .+... . ....+
T Consensus 329 AADvLAE----n~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l---~~kLRklAi~vQe~r~~~dd~a~R~ 401 (459)
T KOG4340|consen 329 AADVLAE----NAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGML---TEKLRKLAIQVQEARHNRDDEAIRK 401 (459)
T ss_pred HHHHHhh----CcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcccHHHHHH
Confidence 7665533 3332 12222222222 22335555555444332211 11111111 11111 1 11334
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 005594 387 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (689)
Q Consensus 387 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (689)
|++.|++++++. ..+....+++|....++..+.+.|++..+...++.
T Consensus 402 ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd 448 (459)
T KOG4340|consen 402 AVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHD 448 (459)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhcccc
Confidence 555666666552 44677888999999999999999999988776654
No 102
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.60 E-value=5.9e-12 Score=130.82 Aligned_cols=312 Identities=12% Similarity=0.029 Sum_probs=221.2
Q ss_pred CHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005594 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160 (689)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~ 160 (689)
+.+.+.....++...|++++|++.+++....-.+....+...|.++..+|++++|...|...++.+|++...+..+..+.
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 45778889999999999999999999998888999999999999999999999999999999999999988755544433
Q ss_pred HHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005594 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDT-ALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (689)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (689)
.... -....+.+.-...|++.....|...... .+...+..-..+.. +..++...+. ..-|.....+-.+|....
T Consensus 83 g~~~--~~~~~~~~~~~~~y~~l~~~yp~s~~~~-rl~L~~~~g~~F~~~~~~yl~~~l~--KgvPslF~~lk~Ly~d~~ 157 (517)
T PF12569_consen 83 GLQL--QLSDEDVEKLLELYDELAEKYPRSDAPR-RLPLDFLEGDEFKERLDEYLRPQLR--KGVPSLFSNLKPLYKDPE 157 (517)
T ss_pred hhhc--ccccccHHHHHHHHHHHHHhCccccchh-HhhcccCCHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHcChh
Confidence 2111 0112356777888888877777643332 22222222223333 3334444443 345566666666666444
Q ss_pred CHHHHHHHHHHHHhc---CCC----c---HHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 005594 240 DLESAIACYERCLAV---SPN----F---EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 309 (689)
Q Consensus 240 ~~~~A~~~~~~al~~---~~~----~---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 309 (689)
+..-...++...... ... . ......+..+++-++..+...|++++|+++++++++..|..++.+...|.+
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~Kari 237 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 433333333333221 100 0 011122344566677777778899999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C-------HHHHHHHHHHHHH
Q 005594 310 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN--F-------SQSLNNLGVVYTV 380 (689)
Q Consensus 310 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~-------~~~~~~la~~~~~ 380 (689)
+...|++.+|...++.+-.++..+-.+....+..+++.|+.++|.+.+....+.+-+ . .......|.+|.+
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888888888888889999999999888777654421 1 1233456888889
Q ss_pred cCCHHHHHHHHHHHHHh
Q 005594 381 QGKMDAAAEMIEKAIAA 397 (689)
Q Consensus 381 ~g~~~~A~~~~~~al~~ 397 (689)
.|++..|++.|..+.+.
T Consensus 318 ~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLKH 334 (517)
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 99999999888888765
No 103
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.58 E-value=1.3e-13 Score=126.54 Aligned_cols=153 Identities=20% Similarity=0.205 Sum_probs=130.9
Q ss_pred hhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 005594 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA 353 (689)
Q Consensus 274 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 353 (689)
-.|...|+++......++.. +|.. -+...++.++++..++++++.+|++.+.|..+|.++...|++++|
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 34556777777654443221 1110 112367789999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005594 354 VECYQMALSIKPNFSQSLNNLGVVY-TVQGK--MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (689)
Q Consensus 354 ~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (689)
+..|+++++++|+++.++..+|.++ ...|+ +++|.+.++++++.+|++..+++.+|..+...|++++|+.+|+++++
T Consensus 93 ~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 93 LLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999975 67787 59999999999999999999999999999999999999999999999
Q ss_pred cCCCChh
Q 005594 431 IDPDSRN 437 (689)
Q Consensus 431 ~~p~~~~ 437 (689)
++|.+.+
T Consensus 173 l~~~~~~ 179 (198)
T PRK10370 173 LNSPRVN 179 (198)
T ss_pred hCCCCcc
Confidence 9988653
No 104
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=1e-12 Score=117.28 Aligned_cols=173 Identities=17% Similarity=0.123 Sum_probs=161.4
Q ss_pred hhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005594 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 356 (689)
Q Consensus 277 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 356 (689)
...++..-|..++++.....|.+.......|..+...|++++|+++|+..++.+|.+...+...-.+...+|+.-+|++.
T Consensus 63 ld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ 142 (289)
T KOG3060|consen 63 LDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKE 142 (289)
T ss_pred HHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999888899999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCC
Q 005594 357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG---SISLAIDAYEQCLKIDP 433 (689)
Q Consensus 357 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p 433 (689)
+...++..+.+.++|..++.+|...|++++|.-++++.+-+.|.++..+..+|.+++-+| +.+-|.++|.++++++|
T Consensus 143 ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 143 LNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 999999999999999999999999999999999999999999999999999999998877 56789999999999999
Q ss_pred CChhhHhhHHHHhhhc
Q 005594 434 DSRNAGQNRLLAMNYI 449 (689)
Q Consensus 434 ~~~~~~~~~~~~~~~~ 449 (689)
.+..++....++...+
T Consensus 223 ~~~ral~GI~lc~~~l 238 (289)
T KOG3060|consen 223 KNLRALFGIYLCGSAL 238 (289)
T ss_pred HhHHHHHHHHHHHHHH
Confidence 8888888877665554
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.55 E-value=3.2e-11 Score=140.23 Aligned_cols=348 Identities=13% Similarity=-0.019 Sum_probs=255.8
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCC---------CHHH
Q 005594 49 KDALSYANILRSRNKFVDALALYEIVLE-KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---------NACA 118 (689)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~ 118 (689)
..+...+..+...|++..+..+++.+-. ....++......+.++...|++++|...+.++....+. ....
T Consensus 375 ~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~ 454 (903)
T PRK04841 375 DILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEF 454 (903)
T ss_pred HHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHH
Confidence 3445567777788888887777655411 11234455677888889999999999999988764321 1234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCC------CHH
Q 005594 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH------YAP 192 (689)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~ 192 (689)
...++.++...|++++|...+++++...+.... ...+.....+|..+...|++++|...+++++..... ...
T Consensus 455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~ 532 (903)
T PRK04841 455 NALRAQVAINDGDPEEAERLAELALAELPLTWY--YSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALW 532 (903)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence 556788889999999999999999986554322 223344677888999999999999999999876332 134
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhh
Q 005594 193 AYYNLGVVYSELMQYDTALGCYEKAALERPM--------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 264 (689)
Q Consensus 193 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 264 (689)
++..+|.++...|++++|...+++++..... ....+..+|.++...|++++|...+.+++......... .
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~--~ 610 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ--Q 610 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch--H
Confidence 5678899999999999999999999875221 23345678899999999999999999998865432211 1
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCC---HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH---
Q 005594 265 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY---ADAM----YNLGVAYGEMLKFDMAIVFYELAFHFNPHCA--- 334 (689)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--- 334 (689)
....+..++.++...|++++|...+.++....... .... ......+...|+.+.|...+.......+...
T Consensus 611 ~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 690 (903)
T PRK04841 611 QLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFL 690 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhH
Confidence 23455667888888999999999999997653322 1111 1123445568899999999877665332222
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005594 335 -EACNNLGVIYKDRDNLDKAVECYQMALSIKP------NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (689)
Q Consensus 335 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (689)
..+..++.++...|++++|...+++++.... ....++..+|.++...|+.++|...+.+++++...
T Consensus 691 ~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 691 QGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 2256789999999999999999999987632 22457888999999999999999999999998654
No 106
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.54 E-value=9.9e-13 Score=120.62 Aligned_cols=124 Identities=18% Similarity=0.149 Sum_probs=116.5
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q 005594 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY-KDRDN--LDKAVE 355 (689)
Q Consensus 279 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~ 355 (689)
.++.++++..++++++.+|++.+.|..+|.++...|++++|+..|+++++++|+++.++..+|.++ ...|+ +++|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 457789999999999999999999999999999999999999999999999999999999999975 67777 599999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 005594 356 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402 (689)
Q Consensus 356 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 402 (689)
.++++++.+|++..++..+|..+.+.|++++|+.++++++++.|.+.
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 99999999999999999999999999999999999999999988654
No 107
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.53 E-value=6e-10 Score=112.14 Aligned_cols=379 Identities=13% Similarity=0.145 Sum_probs=213.2
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC--CHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005594 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSG--NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (689)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (689)
+..|+...+.+..+|+...-...|.++|..-|- +..+|-..-......+-.+-++..|++.++..|...+ .....
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~e---eyie~ 178 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEARE---EYIEY 178 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHH---HHHHH
Confidence 566778888889999999999999999988763 4455555555566777788899999999999887643 33455
Q ss_pred HHHcCCHHHHHHHHHHHHhcC-------CCCHHHH-------------------------------HHHHHHHHHhHHHH
Q 005594 126 YKDEGRLVEAAESYHKALSAD-------PSYKPAA-------------------------------ECLAIVLTDLGTSL 167 (689)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~-------p~~~~~~-------------------------------~~~a~~~~~l~~~~ 167 (689)
+...++.++|.+.+...+..+ +.+...+ ..++.++..|+..|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 677888888888887766431 1111111 12345677899999
Q ss_pred HHcCChHHHHHHHHHHHhhCCC---CHHHHH-----HHHHHHHHcC-------------CHHHHHHHHHHHH--------
Q 005594 168 KLAGNTQDGIQKYYEALKIDPH---YAPAYY-----NLGVVYSELM-------------QYDTALGCYEKAA-------- 218 (689)
Q Consensus 168 ~~~~~~~~A~~~~~~al~~~~~---~~~~~~-----~la~~~~~~g-------------~~~~A~~~~~~al-------- 218 (689)
.+.|.+++|...|++++..--. ...++. .-..+...++ +.+-....|+..+
T Consensus 259 Ir~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lN 338 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLN 338 (835)
T ss_pred HHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHH
Confidence 9999999999999998875211 111111 0000111111 1222233333332
Q ss_pred ----HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHH
Q 005594 219 ----LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV-SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293 (689)
Q Consensus 219 ----~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 293 (689)
..+|++...|..... ...|+..+-+..|.++++. +|... ....+.++..++..|...|+.+.|..+++++.
T Consensus 339 sVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka--~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKA--VGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccC--CCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 234555544444332 3345555555555555432 33322 22334445555555555566666666666665
Q ss_pred hhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC------------------CCHHHHHHHHHHHHHcCCHH
Q 005594 294 YYNWHY----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP------------------HCAEACNNLGVIYKDRDNLD 351 (689)
Q Consensus 294 ~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------------------~~~~~~~~la~~~~~~g~~~ 351 (689)
+..-.. ..+|..-|..-....+++.|+++++++...-. .+..+|..++......|-++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 544222 34555555555555566666665555543311 12345555555555556666
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHH---HHHcCCHHHHHHHHH
Q 005594 352 KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN--PTYAEAYNNLGVL---YRDAGSISLAIDAYE 426 (689)
Q Consensus 352 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~---~~~~g~~~~A~~~~~ 426 (689)
.-...|++.+.+.--.|....|.|..+....-++++.+.|++.+.+. |...++|...-.. -..-.+.+.|...|+
T Consensus 495 stk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFE 574 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFE 574 (835)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 66666666665555555555555555555555566666666555553 3333333322111 112224555566666
Q ss_pred HHHhcCC
Q 005594 427 QCLKIDP 433 (689)
Q Consensus 427 ~al~~~p 433 (689)
+|++..|
T Consensus 575 qaL~~Cp 581 (835)
T KOG2047|consen 575 QALDGCP 581 (835)
T ss_pred HHHhcCC
Confidence 6665555
No 108
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.52 E-value=3.5e-12 Score=138.17 Aligned_cols=269 Identities=14% Similarity=0.040 Sum_probs=185.6
Q ss_pred ccCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 005594 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (689)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (689)
.+...+.+..++..+...+++++|++.++..++.+|+....++.+|.++++.++++++... .++...+.
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~--------- 95 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQ--------- 95 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccc---------
Confidence 4457888999999999999999999999999999999999999999999999997776655 45444333
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 005594 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (689)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 203 (689)
..++ .+++++...+...+++..+ ++.+|.+|...|+.++|...|+++++.+|+++.++.++|..|..
T Consensus 96 -----~~~~-~~ve~~~~~i~~~~~~k~A-------l~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 96 -----NLKW-AIVEHICDKILLYGENKLA-------LRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE 162 (906)
T ss_pred -----ccch-hHHHHHHHHHHhhhhhhHH-------HHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 3344 4444444444445555444 77788888888888888888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHH-HHHH-----------
Q 005594 204 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI-ALTD----------- 271 (689)
Q Consensus 204 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~----------- 271 (689)
. +.++|++++.+++.. +...+++.++.+++.+.+..+|.+.+....+-. +...
T Consensus 163 ~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~ 227 (906)
T PRK14720 163 E-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLE 227 (906)
T ss_pred h-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHH
Confidence 8 888888888888765 556668888888888888888876654332211 1112
Q ss_pred -hhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 005594 272 -LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 350 (689)
Q Consensus 272 -l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 350 (689)
+-..|...+++++++.+++.+++.+|++..+...++.+|. ++|.. ...++..+++. .+--...++
T Consensus 228 ~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s-----------~l~~~~~~~ 293 (906)
T PRK14720 228 DLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMS-----------DIGNNRKPV 293 (906)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHh-----------ccccCCccH
Confidence 2244555566666666666666666666666666666665 22222 23333333221 000111355
Q ss_pred HHHHHHHHHHHhcCC
Q 005594 351 DKAVECYQMALSIKP 365 (689)
Q Consensus 351 ~~A~~~~~~al~~~p 365 (689)
..|+.-|++-+..++
T Consensus 294 ~~~i~~fek~i~f~~ 308 (906)
T PRK14720 294 KDCIADFEKNIVFDT 308 (906)
T ss_pred HHHHHHHHHHeeecC
Confidence 677777777766543
No 109
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.52 E-value=2.6e-12 Score=116.12 Aligned_cols=177 Identities=23% Similarity=0.217 Sum_probs=136.0
Q ss_pred HHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005594 244 AIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 323 (689)
Q Consensus 244 A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 323 (689)
+...+-.....+|++... ..++..+.. .|+-+.+..+..++...+|.+...+..+|...+..|++.+|+..+
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~-------~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~ 123 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYL-------RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVL 123 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHh-------cccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHH
Confidence 444444444555555443 333333333 345566666666666666777777777888888888888888888
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 005594 324 ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403 (689)
Q Consensus 324 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 403 (689)
+++....|++.++|..+|.+|.+.|++++|...|.+++++.|+.+.+..|+|..+.-.|+++.|..++..+....+.+..
T Consensus 124 rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~ 203 (257)
T COG5010 124 RKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSR 203 (257)
T ss_pred HHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594 404 AYNNLGVLYRDAGSISLAIDAYEQC 428 (689)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~a 428 (689)
+..+|+.+...+|++++|...-.+-
T Consensus 204 v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 204 VRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHHHHhhcCChHHHHhhcccc
Confidence 8888888888888888888765543
No 110
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.51 E-value=3.6e-10 Score=113.65 Aligned_cols=360 Identities=14% Similarity=0.132 Sum_probs=267.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005594 64 FVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ--NACAHTHCGILYKDEGRLVEAAESYHK 141 (689)
Q Consensus 64 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~ 141 (689)
|..--.+|++++-.--+-+.+|......+..+|+...-...|.++|..-|- +..+|-..-......+-.+-++..|++
T Consensus 84 ~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrR 163 (835)
T KOG2047|consen 84 YESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRR 163 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHH
Confidence 444555666666644556788889999999999999999999999998774 455676666777788888999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhh------------------------CCCC-------
Q 005594 142 ALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------------------------DPHY------- 190 (689)
Q Consensus 142 al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~------------------------~~~~------- 190 (689)
.++..|...+.+ ...+...+++++|.+.+...+.. +|+.
T Consensus 164 YLk~~P~~~eey----------ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvd 233 (835)
T KOG2047|consen 164 YLKVAPEAREEY----------IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVD 233 (835)
T ss_pred HHhcCHHHHHHH----------HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHH
Confidence 999999875432 22334456666666666555432 2221
Q ss_pred --------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHH-----HHHHHHHHHcC---------
Q 005594 191 --------------APAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAY-----CNMGVIYKNRG--------- 239 (689)
Q Consensus 191 --------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~-----~~la~~~~~~g--------- 239 (689)
...|..||..|.+.|.+++|...|++++..--. ...++ +.-..+...++
T Consensus 234 aiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ 313 (835)
T KOG2047|consen 234 AIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNE 313 (835)
T ss_pred HHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccCh
Confidence 346788999999999999999999999874221 11111 11111111111
Q ss_pred ----CHHHHHHHHHHH------------HhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhh-CCC----
Q 005594 240 ----DLESAIACYERC------------LAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY-NWH---- 298 (689)
Q Consensus 240 ----~~~~A~~~~~~a------------l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~---- 298 (689)
+.+-....|+.. +..+|++...|.....++ .++..+-+..|.+++.. +|.
T Consensus 314 ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~---------e~~~~~~i~tyteAv~~vdP~ka~G 384 (835)
T KOG2047|consen 314 EDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY---------EGNAAEQINTYTEAVKTVDPKKAVG 384 (835)
T ss_pred hhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhh---------cCChHHHHHHHHHHHHccCcccCCC
Confidence 223333444443 445788877776554443 57889999999988854 554
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------
Q 005594 299 -YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH----CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN------- 366 (689)
Q Consensus 299 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------- 366 (689)
....|..+|..|...|+.+.|...|+++.+..-. -..+|...|..-+...+++.|+++.++|...-..
T Consensus 385 s~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd 464 (835)
T KOG2047|consen 385 SPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYD 464 (835)
T ss_pred ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhc
Confidence 3468999999999999999999999999987532 3788999999999999999999999999865211
Q ss_pred -----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C
Q 005594 367 -----------FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID--P 433 (689)
Q Consensus 367 -----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p 433 (689)
...+|..++......|-++.-...|++.+.+.--.+++..+.|..+....-+++|.+.|++.+.+. |
T Consensus 465 ~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p 544 (835)
T KOG2047|consen 465 NSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWP 544 (835)
T ss_pred CCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCc
Confidence 234788999999999999999999999999988889999999999999999999999999999986 4
Q ss_pred CChhhHhhH
Q 005594 434 DSRNAGQNR 442 (689)
Q Consensus 434 ~~~~~~~~~ 442 (689)
+-.+.|..+
T Consensus 545 ~v~diW~tY 553 (835)
T KOG2047|consen 545 NVYDIWNTY 553 (835)
T ss_pred cHHHHHHHH
Confidence 444444443
No 111
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=5.2e-11 Score=106.48 Aligned_cols=184 Identities=17% Similarity=0.158 Sum_probs=148.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHH
Q 005594 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (689)
Q Consensus 187 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 266 (689)
.++...++-....+....|+.+.|..++++.....|++..+....|..+...|++++|+++|+..++.+|.+...+....
T Consensus 48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKl 127 (289)
T KOG3060|consen 48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKL 127 (289)
T ss_pred CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHH
Confidence 34445666677777888899999999999988888999999999999999999999999999999999998876665444
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 005594 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (689)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 346 (689)
.++.. +|+..+|++.+...++..+.+.++|..++.+|...|+|++|.-+|++.+-+.|.++..+..+|.+++-
T Consensus 128 Ailka-------~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt 200 (289)
T KOG3060|consen 128 AILKA-------QGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYT 200 (289)
T ss_pred HHHHH-------cCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 44433 55777888888888888888888888888888888888888888888888888888888888888777
Q ss_pred cC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005594 347 RD---NLDKAVECYQMALSIKPNFSQSLNNLGVV 377 (689)
Q Consensus 347 ~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~ 377 (689)
+| +++-|.++|.++++++|.+..+++.+-.+
T Consensus 201 ~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 201 QGGAENLELARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred HhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 66 56778888888888888776666555444
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.50 E-value=1.6e-12 Score=132.62 Aligned_cols=226 Identities=19% Similarity=0.169 Sum_probs=191.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHH
Q 005594 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267 (689)
Q Consensus 188 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 267 (689)
|........++.++...|-...|+..+++. ..|-....+|...|+..+|.....+-++.+|+ + .
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d-~-------~ 458 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELEKDPD-P-------R 458 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCc-c-------h
Confidence 334556678899999999999999999884 67778889999999999999999998884443 3 3
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 005594 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 347 (689)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 347 (689)
.|..+|++.....-+++|.++.+.. +..+...+|......++|+++.+.++..++++|-....|+.+|.+..+.
T Consensus 459 lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql 532 (777)
T KOG1128|consen 459 LYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQL 532 (777)
T ss_pred hHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHH
Confidence 4445555444444566666655543 4456777788788889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005594 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427 (689)
Q Consensus 348 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (689)
++++.|.++|..++.++|++.++|++++..|.+.|+..+|...++++++.+-++..+|.|...+..+.|.+++|++.|.+
T Consensus 533 ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred HHhcCCCC
Q 005594 428 CLKIDPDS 435 (689)
Q Consensus 428 al~~~p~~ 435 (689)
.+.+.-+.
T Consensus 613 ll~~~~~~ 620 (777)
T KOG1128|consen 613 LLDLRKKY 620 (777)
T ss_pred HHHhhhhc
Confidence 98775443
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.49 E-value=6.1e-12 Score=113.77 Aligned_cols=181 Identities=17% Similarity=0.141 Sum_probs=167.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKA 142 (689)
Q Consensus 63 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 142 (689)
+...+...+-+....+|++..+ ..++..+...|+-+.+.....++...+|.+...+..+|......|++.+|+..++++
T Consensus 48 q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA 126 (257)
T COG5010 48 QTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKA 126 (257)
T ss_pred hhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3344666666777889999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005594 143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222 (689)
Q Consensus 143 l~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 222 (689)
....|++.+. +..+|.+|.+.|++++|...|.+++++.|..+.+..++|..+.-.|+++.|..++..+....+
T Consensus 127 ~~l~p~d~~~-------~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 127 ARLAPTDWEA-------WNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred hccCCCChhh-------hhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 9999999887 778888899999999999999999999999999999999999999999999999999999989
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594 223 MYAEAYCNMGVIYKNRGDLESAIACYERC 251 (689)
Q Consensus 223 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a 251 (689)
.+..+..+++.+....|++++|.....+-
T Consensus 200 ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 200 ADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred CchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 89999999999999999999998876553
No 114
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.48 E-value=1.3e-12 Score=113.50 Aligned_cols=119 Identities=14% Similarity=0.147 Sum_probs=102.7
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005594 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (689)
Q Consensus 321 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (689)
+.+++++..+|++......+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+++++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhH
Q 005594 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (689)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (689)
++..++.+|.++...|++++|+..|+++++++|++....
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 888888889999889999999999999998888876543
No 115
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=9.1e-13 Score=121.28 Aligned_cols=115 Identities=29% Similarity=0.462 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005594 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413 (689)
Q Consensus 334 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 413 (689)
++-+..-|.-+.+.++|.+|+..|.+|++++|.++..|.+.+.+|.++|+++.|++.++.++.++|.+..+|..||.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 34456678888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHhhh
Q 005594 414 DAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNY 448 (689)
Q Consensus 414 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 448 (689)
.+|++++|++.|+++|+++|++...+.++-.+..-
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~ 195 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQK 195 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999887776554443
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.45 E-value=5.4e-12 Score=128.78 Aligned_cols=217 Identities=18% Similarity=0.141 Sum_probs=193.2
Q ss_pred HHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005594 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (689)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (689)
-..++..+...|-...|+..|++ ...|-....||...|+..+|..+..+-++ .|.++..|..+|.+.....
T Consensus 401 q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChH
Confidence 34577888888999999999988 46778889999999999999999999998 6777889999998888877
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q 005594 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 319 (689)
Q Consensus 240 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 319 (689)
-|++|.++.+..- +.+...+|......++++++.+.++..++++|-....|+.+|.+..+.++++.|
T Consensus 472 ~yEkawElsn~~s-------------arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 472 LYEKAWELSNYIS-------------ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred HHHHHHHHhhhhh-------------HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 7777777766532 223344555556678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005594 320 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398 (689)
Q Consensus 320 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 398 (689)
.+.|..++..+|++.++|++++..|...++..+|...++++++.+-++..+|.|.-.+....|.+++|++.+.+.+.+.
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998874
No 117
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.43 E-value=2e-11 Score=131.80 Aligned_cols=142 Identities=8% Similarity=-0.037 Sum_probs=89.5
Q ss_pred HHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 005594 75 LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAE 154 (689)
Q Consensus 75 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 154 (689)
....|+++++++.+|.+....|.+++|...++.+++..|++..++..++.++.+.+++++|+..+++++..+|++...
T Consensus 79 ~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~-- 156 (694)
T PRK15179 79 VRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSARE-- 156 (694)
T ss_pred HHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHH--
Confidence 334566666666666666666666666666666666666666666666666666666666666666666666666554
Q ss_pred HHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005594 155 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM 223 (689)
Q Consensus 155 ~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 223 (689)
+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+
T Consensus 157 -----~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 157 -----ILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred -----HHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 4445555555566666666666666666666666666666666666666666666666665443
No 118
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.42 E-value=6.1e-12 Score=109.18 Aligned_cols=119 Identities=16% Similarity=0.228 Sum_probs=113.8
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005594 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366 (689)
Q Consensus 287 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 366 (689)
+.+++++..+|++......+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+++++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 005594 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405 (689)
Q Consensus 367 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 405 (689)
++..++.+|.++...|++++|+..++++++++|++....
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 999999999999999999999999999999999876643
No 119
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.42 E-value=6e-12 Score=106.37 Aligned_cols=105 Identities=12% Similarity=0.047 Sum_probs=78.4
Q ss_pred hhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 005594 328 HFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 406 (689)
Q Consensus 328 ~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 406 (689)
.+. ++..+..+.+|..+...|++++|...|+.+..++|.+...|++||.++..+|++++|+..|.+++.++|+++..++
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 344 5556667777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005594 407 NLGVLYRDAGSISLAIDAYEQCLKID 432 (689)
Q Consensus 407 ~la~~~~~~g~~~~A~~~~~~al~~~ 432 (689)
++|.++...|+.+.|++.|+.++...
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 77777777777777777777777665
No 120
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.41 E-value=3.1e-12 Score=117.78 Aligned_cols=108 Identities=22% Similarity=0.254 Sum_probs=103.5
Q ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005594 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (689)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (689)
..++.+-..|..+++.++|++|+..|.++|+++|.++..|.+++.+|.++|.++.|++.++.++.++|....+|..+|.+
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A 158 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLA 158 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 34677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 005594 126 YKDEGRLVEAAESYHKALSADPSYKPAA 153 (689)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~ 153 (689)
|..+|++++|++.|+++++++|++...+
T Consensus 159 ~~~~gk~~~A~~aykKaLeldP~Ne~~K 186 (304)
T KOG0553|consen 159 YLALGKYEEAIEAYKKALELDPDNESYK 186 (304)
T ss_pred HHccCcHHHHHHHHHhhhccCCCcHHHH
Confidence 9999999999999999999999998653
No 121
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.37 E-value=1.2e-11 Score=120.01 Aligned_cols=168 Identities=14% Similarity=0.028 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHH
Q 005594 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (689)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 270 (689)
.......|.++...|++++|++.+.+. .+.+.......++..+++++.|.+.++.+.+.+.+.. ...++.++.
T Consensus 102 ~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~--l~qLa~awv 174 (290)
T PF04733_consen 102 EIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSI--LTQLAEAWV 174 (290)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHH--HHHHHHHHH
Confidence 344556667777788888888877653 5567777788888888999999888888877766543 333444443
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 005594 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 350 (689)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 350 (689)
.+.. ..+.+.+|..+|++..+..+.++..+..++.++..+|++++|...+++++..+|.++.++.+++.+....|+.
T Consensus 175 ~l~~---g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 175 NLAT---GGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHH---TTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHh---CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 3220 0234555555555555554555555555555555555555555555555555555555555555555555554
Q ss_pred -HHHHHHHHHHHhcCCCCH
Q 005594 351 -DKAVECYQMALSIKPNFS 368 (689)
Q Consensus 351 -~~A~~~~~~al~~~p~~~ 368 (689)
+.+.+++.+....+|+++
T Consensus 252 ~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 252 TEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp CHHHHHHHHHCHHHTTTSH
T ss_pred hhHHHHHHHHHHHhCCCCh
Confidence 334444444444455443
No 122
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.36 E-value=1.1e-11 Score=120.34 Aligned_cols=259 Identities=18% Similarity=0.096 Sum_probs=190.6
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 005594 166 SLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244 (689)
Q Consensus 166 ~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 244 (689)
.++..|+|..++...+ ....++. ..+....+.+++..+|+++..+.-+... .+....+...++..+...++.+.+
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~---~~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS---SSPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT---SSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC---CChhHHHHHHHHHHHhCccchHHH
Confidence 3456799999997766 2233332 3556778899999999998776555432 233345566677766665677777
Q ss_pred HHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005594 245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE 324 (689)
Q Consensus 245 ~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 324 (689)
+..++..+......... .+....+.++...|++++|++.+.+. .+.+.......++..+++++.|.+.++
T Consensus 86 l~~l~~~~~~~~~~~~~-----~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 86 LEELKELLADQAGESNE-----IVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp HHHHHHCCCTS---CHH-----HHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHhccccccH-----HHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77666554332221111 12233445566689999999888764 567888889999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 005594 325 LAFHFNPHCAEACNNLGVIYKDRD--NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402 (689)
Q Consensus 325 ~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 402 (689)
.+.+.+.+..-.....+++....| ++.+|...|++..+..+..+..+..++.++..+|++++|.+.++++++.+|+++
T Consensus 156 ~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~ 235 (290)
T PF04733_consen 156 NMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP 235 (290)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence 999888887766666677776666 699999999998888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCChhh
Q 005594 403 EAYNNLGVLYRDAGSI-SLAIDAYEQCLKIDPDSRNA 438 (689)
Q Consensus 403 ~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~ 438 (689)
+++.+++.+...+|+. +.+.+++.+....+|+++-.
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 9999999999999998 66778888888899997644
No 123
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.35 E-value=4.1e-11 Score=101.32 Aligned_cols=107 Identities=15% Similarity=0.104 Sum_probs=100.9
Q ss_pred cCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005594 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (689)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (689)
+.+-+.++..|..++..|++++|.++|+-+...+|.+...|+++|.++..+|++++|+..|.+++.++|+++..+.++|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 005594 125 LYKDEGRLVEAAESYHKALSADPSYKP 151 (689)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 151 (689)
+++..|+.+.|.+.|+.++......++
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhccChh
Confidence 999999999999999999998744433
No 124
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=1.2e-09 Score=99.91 Aligned_cols=279 Identities=19% Similarity=0.166 Sum_probs=213.3
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 005594 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (689)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 206 (689)
.+..+|.+|++++..-.+.+|.+... +..+|.+|+...++..|..+|++.-...|......+..+..+++.+.
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAg-------LSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i 93 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAG-------LSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI 93 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc
Confidence 56778999999999888888877655 67788899999999999999999999999988888888999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHH
Q 005594 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286 (689)
Q Consensus 207 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 286 (689)
+.+|+...........-.......-+-+.+..+++..+....++.-.. +. +....+.|-+..+.|++++|+
T Consensus 94 ~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e--n~-------Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 94 YADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE--NE-------ADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCC--Cc-------cchhccchheeeccccHHHHH
Confidence 999998887765432222344555566677777777777666553211 11 334556677777789999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCC----------------C---------HHHH
Q 005594 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF----NPH----------------C---------AEAC 337 (689)
Q Consensus 287 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~----------------~---------~~~~ 337 (689)
+-|+.+++...-.+-.-++++.++++.++++.|+++..+.++. +|. + .+++
T Consensus 165 qkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 9999999998888889999999999999999999988887764 232 1 3556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 005594 338 NNLGVIYKDRDNLDKAVECYQMALSIKPN-----FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412 (689)
Q Consensus 338 ~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 412 (689)
+..+.++++.|+++.|.+.+. .+.|. ++..+.+++..- ..+++.+...-++-.+.++|--.+...++-.+|
T Consensus 245 NLKaAIeyq~~n~eAA~eaLt---DmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLlly 320 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALT---DMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLY 320 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhh---cCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 677888889999988877653 33332 355777776543 346677777788888888997788888999999
Q ss_pred HHcCCHHHHHHHH
Q 005594 413 RDAGSISLAIDAY 425 (689)
Q Consensus 413 ~~~g~~~~A~~~~ 425 (689)
.+..-++-|...+
T Consensus 321 CKNeyf~lAADvL 333 (459)
T KOG4340|consen 321 CKNEYFDLAADVL 333 (459)
T ss_pred hhhHHHhHHHHHH
Confidence 9888777777654
No 125
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.30 E-value=1.3e-09 Score=103.28 Aligned_cols=184 Identities=11% Similarity=0.035 Sum_probs=139.0
Q ss_pred ccCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHH---HHhHHHHHHHhCCHHHHHHHHHHHHHcCCCC---HH
Q 005594 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEA---HIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---AC 117 (689)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~ 117 (689)
...+++.++..|..++..|+|++|+..|++++...|..+.+ .+.+|.++++.+++++|+..+++.++.+|++ +.
T Consensus 28 ~~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~ 107 (243)
T PRK10866 28 PDNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 107 (243)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence 34678889999999999999999999999999999987654 5899999999999999999999999998876 45
Q ss_pred HHHHHHHHHHHcC---------------C---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHH
Q 005594 118 AHTHCGILYKDEG---------------R---LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQK 179 (689)
Q Consensus 118 ~~~~la~~~~~~g---------------~---~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~ 179 (689)
+++.+|.++...+ + ..+|+..|++.++..|++.-+... ... +..
T Consensus 108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A----~~r--------------l~~ 169 (243)
T PRK10866 108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDA----TKR--------------LVF 169 (243)
T ss_pred HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHH----HHH--------------HHH
Confidence 7888888764443 1 357889999999999987543111 000 111
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594 180 YYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERC 251 (689)
Q Consensus 180 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a 251 (689)
++..+ ..--+..|..|.+.|.|..|+.-++.+++..|+. .+++..++..|..+|..++|.+.....
T Consensus 170 l~~~l------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 170 LKDRL------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHH------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 11111 2233466777888888888888888888877654 567777888888888888887765543
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.26 E-value=2.4e-09 Score=105.41 Aligned_cols=156 Identities=23% Similarity=0.238 Sum_probs=138.8
Q ss_pred CCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005594 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (689)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a 157 (689)
+|....+++..+..++..|++++|+..++..++..|+|+..+...+.++...++.++|.+.+++++...|.....
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l----- 376 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLL----- 376 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHH-----
Confidence 377888999999999999999999999999999999999999999999999999999999999999999997554
Q ss_pred HHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005594 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237 (689)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 237 (689)
..++|..+.+.|++.+|+..++..+..+|+++..|..|+..|..+|+-.+|... .+..+..
T Consensus 377 --~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~ 437 (484)
T COG4783 377 --QLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYAL 437 (484)
T ss_pred --HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHh
Confidence 667788888889999999999999999999999999999999999987776544 4556777
Q ss_pred cCCHHHHHHHHHHHHhcCCC
Q 005594 238 RGDLESAIACYERCLAVSPN 257 (689)
Q Consensus 238 ~g~~~~A~~~~~~al~~~~~ 257 (689)
.|++++|+..+..+.+...-
T Consensus 438 ~G~~~~A~~~l~~A~~~~~~ 457 (484)
T COG4783 438 AGRLEQAIIFLMRASQQVKL 457 (484)
T ss_pred CCCHHHHHHHHHHHHHhccC
Confidence 89999999999998877643
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.26 E-value=1e-09 Score=108.02 Aligned_cols=158 Identities=17% Similarity=0.150 Sum_probs=145.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 005594 297 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 376 (689)
Q Consensus 297 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 376 (689)
|....+++..+..++..|++++|+..++..+...|+|+..+...+.++.+.++.++|.+.+++++.++|+.+....++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHhhhccCCCh
Q 005594 377 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD 454 (689)
Q Consensus 377 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 454 (689)
+|.+.|++.+|+..++..+..+|+++..|..|+..|..+|+..+|...+.+...+.-+-..+......+......+..
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~ 460 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVKLGFP 460 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhccCCcH
Confidence 999999999999999999999999999999999999999999999999999999888877777666555555544443
No 128
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.24 E-value=2.1e-10 Score=115.82 Aligned_cols=109 Identities=20% Similarity=0.131 Sum_probs=103.1
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 005594 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (689)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (689)
..+...|..++..|+|++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++++|+++.+++.+|.++..
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005594 129 EGRLVEAAESYHKALSADPSYKPAAECLA 157 (689)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~~~~~~a 157 (689)
+|++++|+..|+++++++|++......+.
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999999999999988754433
No 129
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.23 E-value=1.9e-09 Score=99.84 Aligned_cols=176 Identities=16% Similarity=0.169 Sum_probs=126.4
Q ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCH---HHH
Q 005594 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CAH 119 (689)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~ 119 (689)
.+++.++..|..++..|+|.+|+..|++++...|.+ ..+.+.+|.+++..|++++|+..+++.++..|+++ .++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 467889999999999999999999999999998875 57899999999999999999999999999999864 578
Q ss_pred HHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCC
Q 005594 120 THCGILYKDEG-----------RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP 188 (689)
Q Consensus 120 ~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 188 (689)
+.+|.++.... ...+|+..|+..++..|++.-+.. |...+..+-+
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~---------------------A~~~l~~l~~--- 138 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEE---------------------AKKRLAELRN--- 138 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHH---------------------HHHHHHHHHH---
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHH---------------------HHHHHHHHHH---
Confidence 88888876543 345899999999999999764421 1111111100
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHH
Q 005594 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA---EAYCNMGVIYKNRGDLESAI 245 (689)
Q Consensus 189 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~ 245 (689)
.-..--+.+|..|.+.|.+..|+..++.+++..|+.. +++..++..+..+|..+.|.
T Consensus 139 ~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 139 RLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 0123345567778888888888888888888777753 46777777788888777443
No 130
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.22 E-value=3.6e-08 Score=102.07 Aligned_cols=324 Identities=17% Similarity=0.184 Sum_probs=213.0
Q ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHH------------HHHHHcCCCCHHHHHHHHHHHH
Q 005594 60 SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF------------SEAVKLDPQNACAHTHCGILYK 127 (689)
Q Consensus 60 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~------------~~al~~~p~~~~~~~~la~~~~ 127 (689)
..|+.+.|.+..+-+ .+...|-++|....+..+.+-|.-++ +++.+ +|+ +.-...+.+..
T Consensus 740 tiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~--e~eakvAvLAi 811 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGE--EDEAKVAVLAI 811 (1416)
T ss_pred EeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCc--chhhHHHHHHH
Confidence 458888887776654 23357777777777776666555443 33322 333 23344567778
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 005594 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207 (689)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 207 (689)
+.|..++|...|++.-. +-.+-..|...|.+++|.+.-+.-=.+ .--..|++.+..+...++.
T Consensus 812 eLgMlEeA~~lYr~ckR---------------~DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di 874 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKR---------------YDLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDI 874 (1416)
T ss_pred HHhhHHHHHHHHHHHHH---------------HHHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccH
Confidence 88999999999988754 334556677889999988876542221 1245788889999999999
Q ss_pred HHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHH
Q 005594 208 DTALGCYEKA----------ALERP----------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267 (689)
Q Consensus 208 ~~A~~~~~~a----------l~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 267 (689)
+.|+++|+++ +..+| .+...|...|..+...|+.+.|+.+|..+-.
T Consensus 875 ~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-------------- 940 (1416)
T KOG3617|consen 875 EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-------------- 940 (1416)
T ss_pred HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------------
Confidence 9999999886 22233 3456778889999999999999999887643
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCC--------
Q 005594 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF------NPHC-------- 333 (689)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~-------- 333 (689)
++.+-++...+|+.++|-.+.++. .+..+.+.+|..|...|++.+|+..|.++-.. ...+
T Consensus 941 -~fs~VrI~C~qGk~~kAa~iA~es-----gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~n 1014 (1416)
T KOG3617|consen 941 -YFSMVRIKCIQGKTDKAARIAEES-----GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLAN 1014 (1416)
T ss_pred -hhhheeeEeeccCchHHHHHHHhc-----ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 344455555667777776665543 45567777888888888888888777765432 1111
Q ss_pred ------HHHHHHHHHHHHHcC-CHHHHHHHHHHH------Hh-----------------cCC-CCHHHHHHHHHHHHHcC
Q 005594 334 ------AEACNNLGVIYKDRD-NLDKAVECYQMA------LS-----------------IKP-NFSQSLNNLGVVYTVQG 382 (689)
Q Consensus 334 ------~~~~~~la~~~~~~g-~~~~A~~~~~~a------l~-----------------~~p-~~~~~~~~la~~~~~~g 382 (689)
+.-....+..|...| +...|..+|.+| ++ ++| .++..+..-+..+....
T Consensus 1015 lal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~ 1094 (1416)
T KOG3617|consen 1015 LALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQ 1094 (1416)
T ss_pred HHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHH
Confidence 111122233444444 445555444332 21 123 45778888888888889
Q ss_pred CHHHHHHHHHH------HHHh----------------CCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594 383 KMDAAAEMIEK------AIAA----------------NPT---------YAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (689)
Q Consensus 383 ~~~~A~~~~~~------al~~----------------~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (689)
+|++|...+-. |+.+ .|. ...++..+|.++.++|.|..|-+-|.+|
T Consensus 1095 qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1095 QYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 99998876544 3433 111 1357888999999999999998887765
No 131
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.22 E-value=3.3e-10 Score=114.48 Aligned_cols=111 Identities=15% Similarity=0.149 Sum_probs=66.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 005594 305 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 384 (689)
Q Consensus 305 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 384 (689)
..|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++.++|+++.+++.+|.++..+|++
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 34555555566666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 005594 385 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (689)
Q Consensus 385 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (689)
++|+..|+++++++|++..+...++.+...+
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 6666666666666666655555555554433
No 132
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.20 E-value=5.8e-09 Score=98.91 Aligned_cols=175 Identities=13% Similarity=0.055 Sum_probs=133.1
Q ss_pred CCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 005594 80 GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA---HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156 (689)
Q Consensus 80 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 156 (689)
.++..++..|..++..|++++|++.|++++...|..+.+ .+.+|.++++.+++++|+..+++.++.+|+++..
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~---- 105 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI---- 105 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch----
Confidence 367788999999999999999999999999999988655 4899999999999999999999999999998775
Q ss_pred HHHHHHhHHHHHHcC------------------ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005594 157 AIVLTDLGTSLKLAG------------------NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218 (689)
Q Consensus 157 a~~~~~l~~~~~~~~------------------~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 218 (689)
..+++.+|.++...+ ...+|+..|++.++..|++..+ .+|...+..+
T Consensus 106 ~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l- 170 (243)
T PRK10866 106 DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFL- 170 (243)
T ss_pred HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHH-
Confidence 445666666543332 1356778888888888886432 1111111111
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---HHHhhHHHHHHHhhhh
Q 005594 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIALTDLGTK 275 (689)
Q Consensus 219 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~l~~~ 275 (689)
......--+..|..|.+.|.+..|+.-++.+++..|+.+ ++...+..++..+|..
T Consensus 171 --~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~ 228 (243)
T PRK10866 171 --KDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLN 228 (243)
T ss_pred --HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCCh
Confidence 111133345789999999999999999999999988754 5666777788777753
No 133
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.17 E-value=1.5e-08 Score=95.38 Aligned_cols=280 Identities=14% Similarity=0.128 Sum_probs=163.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCC-----HHHHHHHH
Q 005594 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAYYNLG 198 (689)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la 198 (689)
.+...+|.+++++..--..+....+..+. ..+-.++.+++..+....++.+++.+-...+.+.... ..+...++
T Consensus 51 ~a~s~~g~y~~mL~~a~sqi~~a~~~~ds-~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~ 129 (518)
T KOG1941|consen 51 TAHSEMGRYKEMLKFAVSQIDTARELEDS-DFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMG 129 (518)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHH
Confidence 44445555555544433333222211111 1123446777777777888888888888777663322 35677799
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---HHHhhHHHHH
Q 005594 199 VVYSELMQYDTALGCYEKAALERPMY------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIAL 269 (689)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~ 269 (689)
..+..++.++++++.|+++++...++ ..++..+|..+....++++|.-+..++.++..... ........++
T Consensus 130 ~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~l 209 (518)
T KOG1941|consen 130 NAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSL 209 (518)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHH
Confidence 99999999999999999999874332 35788899999999999999999999987754321 1222234445
Q ss_pred HHhhhhhhhcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 005594 270 TDLGTKVKLEGDINQGVAYYKKALYYNW------HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 343 (689)
Q Consensus 270 ~~l~~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 343 (689)
+.++..+..+|..-.|.++.+++.++.- .....+..+|.+|...|+.+.|..-|+++...... +-..+|
T Consensus 210 yhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~---~gdrmg-- 284 (518)
T KOG1941|consen 210 YHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMAS---LGDRMG-- 284 (518)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh---hhhhHH--
Confidence 5555555566666666666666554421 12234444555555555555555555554432110 000011
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHhCCCc------HHHHHHHHHHH
Q 005594 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM-----DAAAEMIEKAIAANPTY------AEAYNNLGVLY 412 (689)
Q Consensus 344 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-----~~A~~~~~~al~~~p~~------~~~~~~la~~~ 412 (689)
..+++...+.++....-. -.|++.-++++++.... ...+..++.+|
T Consensus 285 -----------------------qv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iY 341 (518)
T KOG1941|consen 285 -----------------------QVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIY 341 (518)
T ss_pred -----------------------HHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 112333333333332222 23666666666553221 35677788888
Q ss_pred HHcCCHHHHHHHHHHHHhcC
Q 005594 413 RDAGSISLAIDAYEQCLKID 432 (689)
Q Consensus 413 ~~~g~~~~A~~~~~~al~~~ 432 (689)
..+|..++=...+.++-+..
T Consensus 342 rs~gl~d~~~~h~~ra~~~~ 361 (518)
T KOG1941|consen 342 RSKGLQDELRAHVVRAHECV 361 (518)
T ss_pred HhccchhHHHHHHHHHHHHH
Confidence 88887777777777665543
No 134
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=99.15 E-value=4.2e-07 Score=86.78 Aligned_cols=296 Identities=19% Similarity=0.108 Sum_probs=188.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHH
Q 005594 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-APAYYNLGVV 200 (689)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~ 200 (689)
.|.+....|+-..|.+.-.++-++-..+.+... ...-+......|+++.|.+.|+.++. +|+. .-.+..|-.-
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssDqepLI-----hlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyle 163 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSDQEPLI-----HLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLE 163 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhccchHHH-----HHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHH
Confidence 456666788889999988888765555554422 23334555667999999999998875 3332 2222223333
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH-HHHhhHHHHHHHhhhhhhhc
Q 005594 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE-IAKNNMAIALTDLGTKVKLE 279 (689)
Q Consensus 201 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 279 (689)
...+|..+.|..+-+++....|..+.++...-...+..|+++.|+++.+......--.. .+....+..+...+ .....
T Consensus 164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA-~s~ld 242 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA-MSLLD 242 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH-HHHhc
Confidence 45789999999999999999999999888888889999999999999887654321111 11111111111111 11113
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005594 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (689)
Q Consensus 280 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 359 (689)
.+...|.....+++++.|+....-..-+..++..|+..++-.+++.+.+..|.-. ++.+|....--+.++.-+++
T Consensus 243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~-----ia~lY~~ar~gdta~dRlkR 317 (531)
T COG3898 243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD-----IALLYVRARSGDTALDRLKR 317 (531)
T ss_pred CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH-----HHHHHHHhcCCCcHHHHHHH
Confidence 4566777777777777777777777777777777777777777777777666421 22233322222233333333
Q ss_pred ---HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh
Q 005594 360 ---ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA-GSISLAIDAYEQCLK 430 (689)
Q Consensus 360 ---al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~ 430 (689)
...+.|++.+....++..-+..|++..|..--+.+....|. ..++..|+.+-... |+-.+...++-++++
T Consensus 318 a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 318 AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 33456777777777777777777777777777777666665 44556666665554 777777776666664
No 135
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.14 E-value=7.9e-09 Score=95.79 Aligned_cols=175 Identities=23% Similarity=0.210 Sum_probs=124.5
Q ss_pred CHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005594 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (689)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a 157 (689)
++..++..|..++..|++.+|++.|++++...|.. ..+.+.+|.+++..|++++|+..+++.++..|+++.. .
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~----~ 79 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA----D 79 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH----H
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch----h
Confidence 56789999999999999999999999999998875 5789999999999999999999999999999998754 3
Q ss_pred HHHHHhHHHHHHc-----------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 005594 158 IVLTDLGTSLKLA-----------GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226 (689)
Q Consensus 158 ~~~~~l~~~~~~~-----------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 226 (689)
.+++.+|.++... +...+|+..|+..+...|++..+- +|...+..+-+ ....
T Consensus 80 ~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~--------------~A~~~l~~l~~---~la~ 142 (203)
T PF13525_consen 80 YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE--------------EAKKRLAELRN---RLAE 142 (203)
T ss_dssp HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH--------------HHHHHHHHHHH---HHHH
T ss_pred hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH--------------HHHHHHHHHHH---HHHH
Confidence 3455555554432 334577778888887777754322 11111111110 1133
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---HHHhhHHHHHHHhhhhh
Q 005594 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIALTDLGTKV 276 (689)
Q Consensus 227 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~l~~~~ 276 (689)
--+.+|..|.+.|.+..|+..++.+++..|+.. .+...+..++..+|...
T Consensus 143 ~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 143 HELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 456789999999999999999999999999865 45666777788877543
No 136
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.13 E-value=4.3e-09 Score=103.22 Aligned_cols=134 Identities=22% Similarity=0.315 Sum_probs=90.3
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHH
Q 005594 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR-DNLDKAVECYQM 359 (689)
Q Consensus 281 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~ 359 (689)
++++|+.++++++ .+|...|++..|- ..+..+|.+|... |++++|+++|++
T Consensus 89 ~~~~Ai~~~~~A~--------------~~y~~~G~~~~aA--------------~~~~~lA~~ye~~~~d~e~Ai~~Y~~ 140 (282)
T PF14938_consen 89 DPDEAIECYEKAI--------------EIYREAGRFSQAA--------------KCLKELAEIYEEQLGDYEKAIEYYQK 140 (282)
T ss_dssp THHHHHHHHHHHH--------------HHHHHCT-HHHHH--------------HHHHHHHHHHCCTT--HHHHHHHHHH
T ss_pred CHHHHHHHHHHHH--------------HHHHhcCcHHHHH--------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5666666666554 3445555555553 3444567777777 788888888888
Q ss_pred HHhcCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 005594 360 ALSIKPN--F----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-------AEAYNNLGVLYRDAGSISLAIDAYE 426 (689)
Q Consensus 360 al~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~ 426 (689)
|+++... . ...+..+|.++...|+|++|++.|++.....-++ ...+...+.++...|+...|...++
T Consensus 141 A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~ 220 (282)
T PF14938_consen 141 AAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALE 220 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8776321 1 3467788888999999999999999888753221 2355677888999999999999999
Q ss_pred HHHhcCCCChhhHhhH
Q 005594 427 QCLKIDPDSRNAGQNR 442 (689)
Q Consensus 427 ~al~~~p~~~~~~~~~ 442 (689)
+....+|......-..
T Consensus 221 ~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 221 RYCSQDPSFASSREYK 236 (282)
T ss_dssp HHGTTSTTSTTSHHHH
T ss_pred HHHhhCCCCCCcHHHH
Confidence 9999999876655443
No 137
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.13 E-value=3e-06 Score=89.63 Aligned_cols=201 Identities=18% Similarity=0.101 Sum_probs=138.0
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 005594 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE 129 (689)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (689)
..++-..-....+++.+|++.+.+.++..|+..-+....|.++.++|+.++|..+++..-...+++...+-.+-.+|..+
T Consensus 11 rr~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~ 90 (932)
T KOG2053|consen 11 RRLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDL 90 (932)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHH
Confidence 34444555678899999999999999999999999999999999999999999888877777888888999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH-------------
Q 005594 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYN------------- 196 (689)
Q Consensus 130 g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~------------- 196 (689)
+++++|..+|++++..+|+ .+. +..+-.+|.+.++|.+-.+.--+..+..|+.+..+..
T Consensus 91 ~~~d~~~~~Ye~~~~~~P~-eel-------l~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~ 162 (932)
T KOG2053|consen 91 GKLDEAVHLYERANQKYPS-EEL-------LYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSEN 162 (932)
T ss_pred hhhhHHHHHHHHHHhhCCc-HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCc
Confidence 9999999999999999999 444 2223333333333333222222222222322211111
Q ss_pred ---------------------------------HHHHHHHcCCHHHHHHHHHHH-HH-hCCCCHHHHHHHHHHHHHcCCH
Q 005594 197 ---------------------------------LGVVYSELMQYDTALGCYEKA-AL-ERPMYAEAYCNMGVIYKNRGDL 241 (689)
Q Consensus 197 ---------------------------------la~~~~~~g~~~~A~~~~~~a-l~-~~p~~~~~~~~la~~~~~~g~~ 241 (689)
.-.++..+|++++|.+.+..- .+ ..+.+..........+...+++
T Consensus 163 ~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w 242 (932)
T KOG2053|consen 163 ELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRW 242 (932)
T ss_pred ccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcCh
Confidence 113344566777777777332 22 2333444444556666777777
Q ss_pred HHHHHHHHHHHhcCCCc
Q 005594 242 ESAIACYERCLAVSPNF 258 (689)
Q Consensus 242 ~~A~~~~~~al~~~~~~ 258 (689)
.+-.+...+++...+++
T Consensus 243 ~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 243 QELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHHHHHHhCCcc
Confidence 77777777777777765
No 138
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.12 E-value=1.8e-09 Score=91.36 Aligned_cols=105 Identities=24% Similarity=0.303 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHH
Q 005594 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNL 408 (689)
Q Consensus 335 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 408 (689)
+.++.+|..+...|++++|++.|+++++.+|++ ..+++.+|.++...|++++|+..+++++...|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 466777777777888888888888887777665 4577778888888888888888888888877764 5677888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhhH
Q 005594 409 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (689)
Q Consensus 409 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (689)
|.++..+|++++|..+++++++..|++..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 8888888888888888888888888776543
No 139
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=3.1e-09 Score=99.19 Aligned_cols=123 Identities=22% Similarity=0.256 Sum_probs=107.2
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHH
Q 005594 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG---KMDAAAEMI 391 (689)
Q Consensus 315 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~ 391 (689)
+.+.-+.-++.-+..+|++.+-|..||.+|..+|++..|...|.+++++.|++++.+..+|.++..+. ...++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 35566677778888899999999999999999999999999999999999999999999998877643 467889999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 005594 392 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (689)
Q Consensus 392 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (689)
++++.++|++..+.+.||..++..|++.+|...++..++..|.+..
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999999999999999999999999887654
No 140
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.10 E-value=2.3e-09 Score=90.59 Aligned_cols=105 Identities=19% Similarity=0.193 Sum_probs=97.5
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCC---HHHHHH
Q 005594 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTH 121 (689)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 121 (689)
++.++.+|..+...|++++|++.|+++++.+|++ ..+++.+|.++...|++++|+..|++++..+|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 5678999999999999999999999999998876 5789999999999999999999999999998875 678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 005594 122 CGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (689)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 152 (689)
+|.++...|++++|+..++++++..|++..+
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 9999999999999999999999999997654
No 141
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.10 E-value=1.9e-08 Score=94.61 Aligned_cols=306 Identities=16% Similarity=0.166 Sum_probs=181.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhh----CCC--CHH
Q 005594 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI----DPH--YAP 192 (689)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~~~--~~~ 192 (689)
....|.-++...++++|+..+.+.+..-.+...- -..+-.+......+|.+++++..--..+.. +.. ..+
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~R----f~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e 84 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGR----FRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE 84 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHH----HHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666777777777777776543322111 112333444455556666655543322222 111 245
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHH
Q 005594 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267 (689)
Q Consensus 193 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 267 (689)
++.+++..+....++.+++.+-+..+...... ......++.++..++.++++++.|+++++...+..+....
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LE--- 161 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLE--- 161 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceee---
Confidence 66777777777777777777766666543222 2455556777777777777777777776654433222111
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----C------HHHH
Q 005594 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH----C------AEAC 337 (689)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~------~~~~ 337 (689)
-.++..+|.++....++++|..+..++.++... + ..++
T Consensus 162 --------------------------------lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~l 209 (518)
T KOG1941|consen 162 --------------------------------LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSL 209 (518)
T ss_pred --------------------------------eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHH
Confidence 134555566666666666666666665554211 1 3356
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHH
Q 005594 338 NNLGVIYKDRDNLDKAVECYQMALSIK------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT------YAEAY 405 (689)
Q Consensus 338 ~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~ 405 (689)
+.++..+..+|..-.|.++.+++.++. +-.......+|.+|...|+.+.|..-|+++...... ..+++
T Consensus 210 yhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al 289 (518)
T KOG1941|consen 210 YHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEAL 289 (518)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 677777888888888888888877662 223456777888888888888888888888765321 24566
Q ss_pred HHHHHHHHHcCCHHH-----HHHHHHHHHhcCCC----ChhhHhhHHHHhhhccCCChHHHHHHHHH
Q 005594 406 NNLGVLYRDAGSISL-----AIDAYEQCLKIDPD----SRNAGQNRLLAMNYINEGHDDKLFEAHRD 463 (689)
Q Consensus 406 ~~la~~~~~~g~~~~-----A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (689)
...++++....-..+ |++.-++++++... ......+..++..|-..|..++.-+..++
T Consensus 290 ~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~r 356 (518)
T KOG1941|consen 290 DGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVR 356 (518)
T ss_pred HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 667777766555555 88888888776443 23334455667777666666655444333
No 142
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.09 E-value=3.3e-09 Score=104.07 Aligned_cols=169 Identities=21% Similarity=0.232 Sum_probs=122.7
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHcCC--C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005594 89 GICLQMQNMGRLAFDSFSEAVKLDP--Q----NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD 162 (689)
Q Consensus 89 a~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~ 162 (689)
|.+|...+++++|.+.|.++....- + -...+...+.++.+. ++++|+.+|++++.+.-.... ....+.++..
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~-~~~aA~~~~~ 119 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGR-FSQAAKCLKE 119 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence 5666777777777777777765421 1 133455556666555 999999999999887443322 2234777889
Q ss_pred hHHHHHHc-CChHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----C---HHHH
Q 005594 163 LGTSLKLA-GNTQDGIQKYYEALKIDPH------YAPAYYNLGVVYSELMQYDTALGCYEKAALERPM----Y---AEAY 228 (689)
Q Consensus 163 l~~~~~~~-~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~---~~~~ 228 (689)
+|.++... |++++|+++|+++++.... ....+..+|.++...|+|++|++.|++.....-+ . ...+
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 99999998 9999999999999987322 1456788999999999999999999999875322 1 2355
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 005594 229 CNMGVIYKNRGDLESAIACYERCLAVSPNFE 259 (689)
Q Consensus 229 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 259 (689)
+..+.+++..|+...|...+++....+|...
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 6778899999999999999999999988654
No 143
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.09 E-value=7.6e-09 Score=90.34 Aligned_cols=105 Identities=20% Similarity=0.232 Sum_probs=96.7
Q ss_pred HHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005594 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235 (689)
Q Consensus 156 ~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 235 (689)
.+..++..|..|-..|-+.-|.--|.+++.+.|+.+++++.+|..+...|+++.|.+.|+..++++|..-.+..+.|..+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 35567788888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcHH
Q 005594 236 KNRGDLESAIACYERCLAVSPNFEI 260 (689)
Q Consensus 236 ~~~g~~~~A~~~~~~al~~~~~~~~ 260 (689)
.-.|++.-|.+.+.+..+.+|+++-
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred eecCchHhhHHHHHHHHhcCCCChH
Confidence 9999999999999999999998874
No 144
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.08 E-value=6.9e-10 Score=83.09 Aligned_cols=67 Identities=43% Similarity=0.691 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 005594 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG-SISLAIDAYEQCLKIDP 433 (689)
Q Consensus 367 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 433 (689)
++.++..+|.++...|++++|+..|+++++++|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45677777777777777777777777777777777777777777777777 67777777777777776
No 145
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.07 E-value=5.6e-09 Score=94.05 Aligned_cols=124 Identities=18% Similarity=0.218 Sum_probs=102.3
Q ss_pred HhCCCHHHHHHHHHHHHHhCCCC--HHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHH
Q 005594 59 RSRNKFVDALALYEIVLEKDSGN--VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLV 133 (689)
Q Consensus 59 ~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~ 133 (689)
+-.++|..+...+...++.++.+ ...++.+|.++...|++++|+..|++++.+.|+. +.++..+|.++...|+++
T Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~ 89 (168)
T CHL00033 10 FIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHT 89 (168)
T ss_pred ccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHH
Confidence 44556777888887776666554 5678999999999999999999999999887653 458999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHH
Q 005594 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182 (689)
Q Consensus 134 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~ 182 (689)
+|+..+++++.+.|.....+..++.++..+|..+...|+++.|+..+.+
T Consensus 90 eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 90 KALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 9999999999999999998888888888888888788887755544433
No 146
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.04 E-value=1.6e-07 Score=103.04 Aligned_cols=224 Identities=16% Similarity=0.117 Sum_probs=189.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHhhHHHHHHHhhhhhhhcCCHHHH
Q 005594 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV-SPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285 (689)
Q Consensus 207 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 285 (689)
-.+..+.|++.+..+|+..-.|........+.++.++|.+..++++.. ++...+-..++-.+|.++-..| |.-+..
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl 1516 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESL 1516 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHH
Confidence 334566778888888998888888888888899999999999998864 4555555555555666554443 456667
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005594 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (689)
Q Consensus 286 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 365 (689)
.+.|+++.+... ....+..|..+|...+++++|.++|+..++........|..++..++.+++-+.|...+++|++.-|
T Consensus 1517 ~kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP 1595 (1710)
T KOG1070|consen 1517 KKVFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP 1595 (1710)
T ss_pred HHHHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc
Confidence 777888776543 2457888999999999999999999999999888899999999999999999999999999999988
Q ss_pred C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005594 366 N--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (689)
Q Consensus 366 ~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (689)
. +.+.....|.+-++.|+.+.+...|+-.+...|...+.|.-+...-.+.|+.+.++..|++++.+.=.
T Consensus 1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 8 77888999999999999999999999999999999999999999999999999999999999987543
No 147
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.04 E-value=6.9e-09 Score=93.45 Aligned_cols=104 Identities=22% Similarity=0.325 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 005594 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (689)
Q Consensus 335 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 411 (689)
..++.+|.++...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+..+++++.++|.....+.++|.+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 344555555555555555555555555444332 23455555555555555555555555555555555555555555
Q ss_pred HH-------HcCCHH-------HHHHHHHHHHhcCCCChhh
Q 005594 412 YR-------DAGSIS-------LAIDAYEQCLKIDPDSRNA 438 (689)
Q Consensus 412 ~~-------~~g~~~-------~A~~~~~~al~~~p~~~~~ 438 (689)
+. .+|+++ +|+.+|++++..+|++...
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~ 156 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIE 156 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHH
Confidence 54 445544 6666777788888876543
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.04 E-value=3.3e-09 Score=85.55 Aligned_cols=99 Identities=38% Similarity=0.623 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 005594 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (689)
Q Consensus 336 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (689)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|++.+++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 45667777777788888888888888777777777778888888888888888888888888877777888888888888
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 005594 416 GSISLAIDAYEQCLKIDPD 434 (689)
Q Consensus 416 g~~~~A~~~~~~al~~~p~ 434 (689)
|++++|...++++++.+|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 8888888888888777763
No 149
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=8.5e-09 Score=96.34 Aligned_cols=121 Identities=21% Similarity=0.143 Sum_probs=113.7
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHH
Q 005594 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD---NLDKAVECY 357 (689)
Q Consensus 281 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~ 357 (689)
..+..+.-++..+..+|++.+-|..||.+|..+|+++.|...|.+++++.|++++.+..+|.++..+. ...++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 57777888899999999999999999999999999999999999999999999999999999887654 568899999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 005594 358 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 401 (689)
Q Consensus 358 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 401 (689)
+++++++|.+..+...||..+++.|++.+|...++..++..|.+
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999998765
No 150
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.02 E-value=9e-09 Score=92.99 Aligned_cols=119 Identities=26% Similarity=0.398 Sum_probs=95.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 005594 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 374 (689)
Q Consensus 298 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 374 (689)
.....++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+.+++++++..|++...+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 345577888888888888888888888888776553 46788888888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 005594 375 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (689)
Q Consensus 375 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (689)
|.++...|+...+...+++++. .+++|+++++++++++|++.
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchhH
Confidence 8888888887777766665542 26788899999999998874
No 151
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.02 E-value=1.8e-08 Score=96.15 Aligned_cols=107 Identities=20% Similarity=0.203 Sum_probs=97.9
Q ss_pred CchhhHHHHHHHH-HhCCCHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCC---CHHH
Q 005594 46 FEGKDALSYANIL-RSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---NACA 118 (689)
Q Consensus 46 ~~~~~~~~~a~~~-~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~ 118 (689)
.+....+..|..+ +..|+|++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|+++++..|+ .+++
T Consensus 140 ~~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 140 GDANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 4567888888887 67899999999999999999997 589999999999999999999999999998887 4788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 005594 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (689)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 152 (689)
++.+|.++...|++++|...|+++++..|+...+
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 9999999999999999999999999999997654
No 152
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.00 E-value=9.1e-08 Score=83.75 Aligned_cols=202 Identities=18% Similarity=0.196 Sum_probs=134.7
Q ss_pred CHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005594 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160 (689)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~ 160 (689)
.+..++..|..|-..|-..-|.-.|.+++.+.|+-+.++..+|..+...|+++.|.+.|...++++|.+.-+ .
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya-------~ 136 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA-------H 136 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHH-------H
Confidence 356778888888888989999999999999999999999999999999999999999999999999987665 5
Q ss_pred HHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHcC
Q 005594 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE-KAALERPMYAEAYCNMGVIYKNRG 239 (689)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~-~al~~~p~~~~~~~~la~~~~~~g 239 (689)
.+.|..++.-|++.-|.+-+.+-.+.+|+++---..+- +-...-+..+|...+. ++...+ +....|...... .|
T Consensus 137 lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY-l~E~k~dP~~A~tnL~qR~~~~d-~e~WG~~iV~~y---Lg 211 (297)
T COG4785 137 LNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLY-LNEQKLDPKQAKTNLKQRAEKSD-KEQWGWNIVEFY---LG 211 (297)
T ss_pred hccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHH-HHHhhCCHHHHHHHHHHHHHhcc-HhhhhHHHHHHH---Hh
Confidence 56666677778999999988888888888764322221 1123345666655444 333332 222233222222 22
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhh
Q 005594 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295 (689)
Q Consensus 240 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 295 (689)
+..+ ...++++..-..++...-..+..+++-+|+.+...|+.++|...|+-++..
T Consensus 212 kiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 212 KISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 2221 233444444444544444455566666666666666666666666666544
No 153
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.00 E-value=2.8e-08 Score=86.80 Aligned_cols=117 Identities=23% Similarity=0.188 Sum_probs=95.2
Q ss_pred hcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHH
Q 005594 312 EMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMD 385 (689)
Q Consensus 312 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~ 385 (689)
..++...+...++..++.+|+. ..+.+.+|.++...|++++|+..|++++...|+. ..+...++.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 5778888888888888888887 5667788889999999999999999998877554 347788899999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005594 386 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429 (689)
Q Consensus 386 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 429 (689)
+|+..++. +...+-.+.++..+|.++...|++++|+..|++++
T Consensus 103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99998866 33344456788889999999999999999998875
No 154
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.99 E-value=2e-09 Score=80.57 Aligned_cols=67 Identities=36% Similarity=0.602 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 005594 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG-KMDAAAEMIEKAIAANP 399 (689)
Q Consensus 333 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 399 (689)
++..|..+|.++...|++++|+.+|+++++++|+++.++.++|.++..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45667777777777777777777777777777777777777777777777 57777777777777665
No 155
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.99 E-value=3.8e-07 Score=100.18 Aligned_cols=224 Identities=12% Similarity=0.032 Sum_probs=179.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhHHHHHHcCChHHH
Q 005594 98 GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSA-DPSYKPAAECLAIVLTDLGTSLKLAGNTQDG 176 (689)
Q Consensus 98 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A 176 (689)
-.+..+.|++.+..+|+....|..+...+.+.++.++|.+..++++.. ++...+-..++-.++.++ ...-|.-+.-
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNl---En~yG~eesl 1516 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNL---ENAYGTEESL 1516 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhH---HHhhCcHHHH
Confidence 344567788999999999999999999999999999999999999974 555444443333334444 3344667777
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005594 177 IQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (689)
Q Consensus 177 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 256 (689)
.+.|+++.+.. +...++..|..+|...+++++|.++++..++...+....|..++..++++++-+.|...+.+|++.-|
T Consensus 1517 ~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP 1595 (1710)
T KOG1070|consen 1517 KKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP 1595 (1710)
T ss_pred HHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc
Confidence 88888888753 33567889999999999999999999999999888899999999999999999999999999999998
Q ss_pred CcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 005594 257 NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 330 (689)
Q Consensus 257 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 330 (689)
.... .......+.+.++.|+.+.+..+|+..+..+|...+.|.-+...-.+.|+.+.+..+|++++.+.
T Consensus 1596 k~eH-----v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1596 KQEH-----VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hhhh-----HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 8321 12334445555667788888888888888888888888888888888888888888888887763
No 156
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.99 E-value=2.4e-08 Score=104.98 Aligned_cols=144 Identities=22% Similarity=0.192 Sum_probs=119.1
Q ss_pred hhCCCCHHHH--HHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHH
Q 005594 294 YYNWHYADAM--YNLGVAYGEMLK---FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD--------NLDKAVECYQMA 360 (689)
Q Consensus 294 ~~~~~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~a 360 (689)
...|.+..+| +..|.-+...+. ..+|+.+|+++++++|+++.++..++.++.... +..++.+..+++
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3345565554 445655555444 789999999999999999999998888775542 345666777776
Q ss_pred Hhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 005594 361 LSI--KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (689)
Q Consensus 361 l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (689)
+.+ +|.++.++..+|..+...|++++|...+++++.++|+ ..+|..+|.++...|+.++|++.|++|+.++|.++..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 664 7777889999999999999999999999999999994 8899999999999999999999999999999998853
No 157
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=7.4e-07 Score=81.01 Aligned_cols=168 Identities=14% Similarity=0.040 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHH
Q 005594 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (689)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 270 (689)
......-|.++...+++++|++...+. .+.++...-..++.++.+.+-|.+.++++.+++.+. ....++.+|.
T Consensus 108 ~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--tLtQLA~awv 180 (299)
T KOG3081|consen 108 LIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--TLTQLAQAWV 180 (299)
T ss_pred HHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHHH
Confidence 345555677888888999988887763 345666666778888888999999988888776543 4445666666
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 005594 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 350 (689)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 350 (689)
.++. ..+.+.+|.-+|++.-+..+..+..+...+.+...+|+|++|...++.++..++++++.+.++..+-...|..
T Consensus 181 ~la~---ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 181 KLAT---GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred HHhc---cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence 6542 1334667777777776666666667777777777777777777777777777777777777776666666665
Q ss_pred HHHHH-HHHHHHhcCCCCH
Q 005594 351 DKAVE-CYQMALSIKPNFS 368 (689)
Q Consensus 351 ~~A~~-~~~~al~~~p~~~ 368 (689)
.++.. .+.+....+|+++
T Consensus 258 ~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 258 AEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred hHHHHHHHHHHHhcCCcch
Confidence 44443 3344444455543
No 158
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.98 E-value=3.6e-10 Score=105.19 Aligned_cols=107 Identities=19% Similarity=0.159 Sum_probs=100.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 005594 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG 130 (689)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 130 (689)
+-+.|+.|+++|+|++|+++|.+.+..+|.|+..+.+.+.+|++...+..|...+..++.++.....+|...+..-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005594 131 RLVEAAESYHKALSADPSYKPAAECLA 157 (689)
Q Consensus 131 ~~~~A~~~~~~al~~~p~~~~~~~~~a 157 (689)
+..+|.+.++.++++.|++.+....++
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a 206 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLA 206 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHH
Confidence 999999999999999999877544433
No 159
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.98 E-value=1.7e-06 Score=83.46 Aligned_cols=224 Identities=31% Similarity=0.410 Sum_probs=165.1
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCcHHHHhhHHHHHHHhhhhhhhc
Q 005594 204 LMQYDTALGCYEKAALERPM--YAEAYCNMGVIYKNRGDLESAIACYERCLA--VSPNFEIAKNNMAIALTDLGTKVKLE 279 (689)
Q Consensus 204 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~l~~~~~~~ 279 (689)
.+.+..+...+...+...+. ........+..+...+++..+...+...+. ..+... ..+...+......
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 108 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLA-------EALLNLGLLLEAL 108 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchH-------HHHHHHHHHHHHH
Confidence 34555555666666555554 355666666666777777777776666665 333332 2333334444444
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHH
Q 005594 280 GDINQGVAYYKKALYYNWHYADAMYNLGV-AYGEMLKFDMAIVFYELAFHFNP---HCAEACNNLGVIYKDRDNLDKAVE 355 (689)
Q Consensus 280 ~~~~~A~~~~~~al~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~ 355 (689)
+++.+++..+..++...+.........+. ++...|+++.|...+++++...| .........+..+...+++++|+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 188 (291)
T COG0457 109 GKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALE 188 (291)
T ss_pred hhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHH
Confidence 56777777777777666655444445555 78889999999999999888666 356666777777888889999999
Q ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005594 356 CYQMALSIKPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (689)
Q Consensus 356 ~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (689)
.+.+++...+. ....+..++..+...+++++|...+..++...|.....+..++..+...++.+++...+.+++...|.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 189 LLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999999888 68889999999999999999999999999999887777888888888778899999999999999987
No 160
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.98 E-value=8.1e-09 Score=83.22 Aligned_cols=99 Identities=31% Similarity=0.432 Sum_probs=94.1
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 005594 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE 129 (689)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (689)
.++.+|..+...|++++|+..++++++..|.+..++..+|.++...+++++|++.+++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 005594 130 GRLVEAAESYHKALSADPS 148 (689)
Q Consensus 130 g~~~~A~~~~~~al~~~p~ 148 (689)
|++++|...+.++++..|.
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999987763
No 161
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.97 E-value=3.7e-06 Score=81.00 Aligned_cols=228 Identities=32% Similarity=0.454 Sum_probs=119.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCH
Q 005594 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK--IDPHYAPAYYNLGVVYSELMQY 207 (689)
Q Consensus 130 g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~g~~ 207 (689)
+.+..+...+...+...+.. .........+..+...+.+..+...+...+. ..+.....+...+..+...+++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (291)
T COG0457 37 GELAEALELLEEALELLPNS-----DLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKY 111 (291)
T ss_pred hhHHHHHHHHHHHHhcCccc-----cchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhH
Confidence 44444445555544444432 0011134444555555666666666655554 4555566666666666666666
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHH
Q 005594 208 DTALGCYEKAALERPMYAEAYCNMGV-IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286 (689)
Q Consensus 208 ~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 286 (689)
..++..+.+++...+.........+. ++...|++++|...+.+++...|. ..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----~~----------------------- 164 (291)
T COG0457 112 EEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPE----LN----------------------- 164 (291)
T ss_pred HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----cc-----------------------
Confidence 66666666666655554344444444 566666666666666666554432 00
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005594 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-CAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (689)
Q Consensus 287 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 365 (689)
.........+..+...++++.|+..+.+++...+. ....+..++..+...+++++|+..+.+++...|
T Consensus 165 -----------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 233 (291)
T COG0457 165 -----------ELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDP 233 (291)
T ss_pred -----------chHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCc
Confidence 11222222333344445555555555555555555 455555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005594 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (689)
Q Consensus 366 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (689)
.....+..++..+...+.++++...+.+++...|.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 234 DNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 54445555555555445566666666666655554
No 162
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=2.4e-05 Score=77.12 Aligned_cols=384 Identities=13% Similarity=0.068 Sum_probs=226.9
Q ss_pred hhhHHHHHHHHHhCC--CHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHH-HhCCHHHHHHHHHHHHHcCC---CC---
Q 005594 48 GKDALSYANILRSRN--KFVDALALYEIVLEKDSGN---VEAHIGKGICLQ-MQNMGRLAFDSFSEAVKLDP---QN--- 115 (689)
Q Consensus 48 ~~~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p---~~--- 115 (689)
+..++.+|+.+...| +...++++++..+...|.+ +.....+|.+++ ...+.+.|...++++..+.. ..
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv 86 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV 86 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence 456778888888888 8888888888888776653 345666666644 56788888888888876532 22
Q ss_pred -HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHH----------
Q 005594 116 -ACAHTHCGILYKDEG-RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA---------- 183 (689)
Q Consensus 116 -~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~a---------- 183 (689)
..+...++.+|.... .+..|...+++++++..+.+-. -...+..++....-..++..|++.+.--
T Consensus 87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~w---sckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ 163 (629)
T KOG2300|consen 87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYW---SCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFP 163 (629)
T ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchh---hHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhH
Confidence 345666777777766 7788888888888877665532 1334566666666667777666653211
Q ss_pred ---------------------------------Hhh---CCCCH----HHHHHHHH-HHHHcCCHHHHHHHHHHHHH---
Q 005594 184 ---------------------------------LKI---DPHYA----PAYYNLGV-VYSELMQYDTALGCYEKAAL--- 219 (689)
Q Consensus 184 ---------------------------------l~~---~~~~~----~~~~~la~-~~~~~g~~~~A~~~~~~al~--- 219 (689)
.+. +|.+- ..+..+-. .|...|+...+...+++.-+
T Consensus 164 ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siq 243 (629)
T KOG2300|consen 164 YLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQ 243 (629)
T ss_pred HHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHh
Confidence 110 11110 11111211 23344555555555443321
Q ss_pred -hCCC------------CH-----------HHHHHHHH--HHHHcCCHHHHHHHHHHHHhcCCCcH-------HHHhhHH
Q 005594 220 -ERPM------------YA-----------EAYCNMGV--IYKNRGDLESAIACYERCLAVSPNFE-------IAKNNMA 266 (689)
Q Consensus 220 -~~p~------------~~-----------~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~~~ 266 (689)
+.+. .+ .++..+-. .-...|-+++|.++-++++....+.. .......
T Consensus 244 tist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km 323 (629)
T KOG2300|consen 244 TISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKM 323 (629)
T ss_pred ccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 1110 00 01111111 11234566777777777665422211 1111112
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHhhC---CC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-C--
Q 005594 267 IALTDLGTKVKLEGDINQGVAYYKKALYYN---WH-------YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-C-- 333 (689)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~-- 333 (689)
..+..+..+..-.|++.+|++....+.+.. |. .+.+...+|......+.++.|...|..+.+.... +
T Consensus 324 ~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~ 403 (629)
T KOG2300|consen 324 ILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQ 403 (629)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHH
Confidence 223334444455788888887777666543 33 2345667777777888888888888888776433 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---
Q 005594 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT--- 400 (689)
Q Consensus 334 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--- 400 (689)
+....++|.+|...|+-+.--+.++. +.|.+ ..+++..|...+.++++.||...+.+.++....
T Consensus 404 a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~ 480 (629)
T KOG2300|consen 404 AFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDL 480 (629)
T ss_pred HHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhH
Confidence 33456778888887765544433333 33332 235666777778888888888888888877521
Q ss_pred ---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 005594 401 ---YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (689)
Q Consensus 401 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (689)
.+..+..|+.+....|+..++.+..+-++++....++
T Consensus 481 ~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~D 520 (629)
T KOG2300|consen 481 NRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPD 520 (629)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCC
Confidence 1334566788888888888888888877776544443
No 163
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=2.1e-08 Score=97.05 Aligned_cols=73 Identities=23% Similarity=0.335 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhH
Q 005594 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (689)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (689)
++.|++.|+.+++++.+|+....++|+++|+|..+++..|.++..+|+++.|+..|+++++++|+|..+...+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el 331 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAEL 331 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 4555666666666666666666666666666666666666666666666666666666666666665554443
No 164
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.96 E-value=2.9e-09 Score=78.48 Aligned_cols=65 Identities=29% Similarity=0.366 Sum_probs=49.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCH
Q 005594 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA 116 (689)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (689)
+.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35677778888888888888888888888888888888888888888888888888887777764
No 165
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.96 E-value=2.2e-09 Score=83.79 Aligned_cols=82 Identities=26% Similarity=0.306 Sum_probs=73.5
Q ss_pred hCCCHHHHHHHHHHHHHhCCC--CHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005594 60 SRNKFVDALALYEIVLEKDSG--NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAE 137 (689)
Q Consensus 60 ~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 137 (689)
.+|+|++|+..++++++.+|. +...++.+|.|+++.|++++|+..+++ .+.++.+....+.+|.++..+|++++|++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 466788899999999999999999999 88888888999999999999999999999
Q ss_pred HHHHH
Q 005594 138 SYHKA 142 (689)
Q Consensus 138 ~~~~a 142 (689)
.++++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 166
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.95 E-value=3e-09 Score=78.40 Aligned_cols=64 Identities=31% Similarity=0.490 Sum_probs=43.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 005594 373 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (689)
Q Consensus 373 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (689)
.+|..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4566666777777777777777777777777777777777777777777777777777777653
No 167
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.95 E-value=3.4e-08 Score=89.22 Aligned_cols=72 Identities=26% Similarity=0.381 Sum_probs=44.0
Q ss_pred CHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 005594 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (689)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 152 (689)
...+++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..+++++...|.+...
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 108 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSA 108 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH
Confidence 44456666666666666666666666666554432 3456666666666666666666666666666665554
No 168
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.94 E-value=6.9e-08 Score=89.23 Aligned_cols=107 Identities=19% Similarity=0.127 Sum_probs=99.2
Q ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCC---HHHHH
Q 005594 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHT 120 (689)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 120 (689)
+++..+..|..++..|+|.+|...|...++..|++ +.+++.||.+++.+|++++|...|..+.+..|++ +++++
T Consensus 140 ~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 140 PATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 45669999999999999999999999999999985 5899999999999999999999999999987764 68899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 005594 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAA 153 (689)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 153 (689)
.+|.+...+|+.++|...|+++++..|+...+.
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 999999999999999999999999999987763
No 169
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=1.3e-06 Score=90.82 Aligned_cols=313 Identities=17% Similarity=0.167 Sum_probs=192.3
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHH------------HHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCH
Q 005594 49 KDALSYANILRSRNKFVDALALYE------------IVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA 116 (689)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~------------~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (689)
..|-.+|.+..+..+.+-|.-++- ++.+ +|+ +.-...|.....+|..++|+.+|++.-+.
T Consensus 758 ~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~--e~eakvAvLAieLgMlEeA~~lYr~ckR~----- 829 (1416)
T KOG3617|consen 758 SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGE--EDEAKVAVLAIELGMLEEALILYRQCKRY----- 829 (1416)
T ss_pred HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCc--chhhHHHHHHHHHhhHHHHHHHHHHHHHH-----
Confidence 346677888877777776665543 3222 333 33344566677899999999999987553
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHH----------Hhh
Q 005594 117 CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA----------LKI 186 (689)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~a----------l~~ 186 (689)
-.+-..|...|.+++|.+..+.-=.+. +-..|++.+..+...++.+.|+++|+++ +..
T Consensus 830 ---DLlNKlyQs~g~w~eA~eiAE~~DRiH---------Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e 897 (1416)
T KOG3617|consen 830 ---DLLNKLYQSQGMWSEAFEIAETKDRIH---------LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKE 897 (1416)
T ss_pred ---HHHHHHHHhcccHHHHHHHHhhcccee---------hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHh
Confidence 355667888888888887765432222 2233777788888888888888888764 222
Q ss_pred CCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------------hCCCCHHHHHHHHHHH
Q 005594 187 DPH----------YAPAYYNLGVVYSELMQYDTALGCYEKAAL---------------------ERPMYAEAYCNMGVIY 235 (689)
Q Consensus 187 ~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~---------------------~~p~~~~~~~~la~~~ 235 (689)
+|. +...|...|..+...|+.+.|+.+|..+-. ....+..+.+.+|..|
T Consensus 898 ~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~Y 977 (1416)
T KOG3617|consen 898 YPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMY 977 (1416)
T ss_pred ChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHh
Confidence 332 355667778888899999999999988743 2345667889999999
Q ss_pred HHcCCHHHHHHHHHHHHhc------CCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 005594 236 KNRGDLESAIACYERCLAV------SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 309 (689)
Q Consensus 236 ~~~g~~~~A~~~~~~al~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 309 (689)
...|+..+|+..|.++-.. ...+... ..+...... ....+.-.|..+|++.- .....-..+
T Consensus 978 En~g~v~~Av~FfTrAqafsnAIRlcKEnd~~-d~L~nlal~-----s~~~d~v~aArYyEe~g-------~~~~~AVmL 1044 (1416)
T KOG3617|consen 978 ENDGDVVKAVKFFTRAQAFSNAIRLCKENDMK-DRLANLALM-----SGGSDLVSAARYYEELG-------GYAHKAVML 1044 (1416)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-HHHHHHHhh-----cCchhHHHHHHHHHHcc-------hhhhHHHHH
Confidence 9999999999998876432 2221100 011110000 01123333333443321 011112234
Q ss_pred HHhcCCHHHHHHHHHH-----HH-----hhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH------HHhcC--------
Q 005594 310 YGEMLKFDMAIVFYEL-----AF-----HFNP-HCAEACNNLGVIYKDRDNLDKAVECYQM------ALSIK-------- 364 (689)
Q Consensus 310 ~~~~g~~~~A~~~~~~-----al-----~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~------al~~~-------- 364 (689)
|.+.|.+.+|+++--+ ++ .+++ .++..+..-+..+....+|++|..++-. |+.+.
T Consensus 1045 YHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vt 1124 (1416)
T KOG3617|consen 1045 YHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVT 1124 (1416)
T ss_pred HHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchh
Confidence 4445555555543211 11 1233 3577777777888888888888765443 33331
Q ss_pred --------CCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594 365 --------PNF---------SQSLNNLGVVYTVQGKMDAAAEMIEKA 394 (689)
Q Consensus 365 --------p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~a 394 (689)
|.. ..++..+|.++.++|.|..|-+-|.+|
T Consensus 1125 ee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1125 EEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 111 237788999999999998887777665
No 170
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.93 E-value=2.8e-09 Score=83.18 Aligned_cols=81 Identities=28% Similarity=0.420 Sum_probs=54.3
Q ss_pred cCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 005594 347 RDNLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 424 (689)
Q Consensus 347 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 424 (689)
+|++++|+.+++++++..|. +...++.+|.++++.|++++|+..+++ .+.++.+....+.+|.++..+|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777777777664 344566667777777777777777777 666666666666777777777777777777
Q ss_pred HHHH
Q 005594 425 YEQC 428 (689)
Q Consensus 425 ~~~a 428 (689)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 7654
No 171
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.93 E-value=5.7e-08 Score=84.90 Aligned_cols=129 Identities=16% Similarity=0.057 Sum_probs=106.3
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCC---HHHHHH
Q 005594 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTH 121 (689)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 121 (689)
+...+..+......++...+...++++++.+|+. ..+.+.+|.+++..|++++|...|++++...|+. ..+.+.
T Consensus 11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 11 ASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 4556777777778999999999999999999988 5678889999999999999999999999987654 457888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHH
Q 005594 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184 (689)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al 184 (689)
++.++...|++++|+..++.. . +... .+.+...+|.++...|++++|+..|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~-~--~~~~-----~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQI-P--DEAF-----KALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhc-c--Ccch-----HHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999999999999999999662 1 1111 13346678889999999999999988764
No 172
>PRK15331 chaperone protein SicA; Provisional
Probab=98.93 E-value=2.2e-08 Score=85.28 Aligned_cols=107 Identities=11% Similarity=0.028 Sum_probs=99.4
Q ss_pred cccCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 005594 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (689)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (689)
.....-+..+..|..++.+|++++|..+|+-+...+|.+++.++.+|.|+..+++|++|+..|..+..++++++...+..
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 34456778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 005594 123 GILYKDEGRLVEAAESYHKALSADPSYK 150 (689)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~p~~~ 150 (689)
|.|+...|+.++|+..|+.++. .|.+.
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence 9999999999999999999998 45533
No 173
>PRK11906 transcriptional regulator; Provisional
Probab=98.92 E-value=1e-07 Score=94.83 Aligned_cols=160 Identities=9% Similarity=0.008 Sum_probs=106.1
Q ss_pred hHHHHHHHHHhCC---CHHHHHHHHHHHH---HhCCCCHHHHHhHHHHHHHh---------CCHHHHHHHHHHHHHcCCC
Q 005594 50 DALSYANILRSRN---KFVDALALYEIVL---EKDSGNVEAHIGKGICLQMQ---------NMGRLAFDSFSEAVKLDPQ 114 (689)
Q Consensus 50 ~~~~~a~~~~~~g---~~~~A~~~~~~~l---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~ 114 (689)
.++..|...+..+ ..+.|+.+|.+++ +.+|..+.++..++.|++.. .+..+|.+..+++++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 4566777766655 3567778888888 77888888888888887654 1345667777777777777
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 005594 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 194 (689)
Q Consensus 115 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 194 (689)
++.++..+|.++...++++.|...|++++.++|+...+ ++..|......|+.++|.+.++++++++|....+-
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~-------~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASL-------YYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHH-------HHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 77777777777777777777777777777777776554 55556666666777777777777777777654333
Q ss_pred HHHHHH-HHHcCCHHHHHHHHHH
Q 005594 195 YNLGVV-YSELMQYDTALGCYEK 216 (689)
Q Consensus 195 ~~la~~-~~~~g~~~~A~~~~~~ 216 (689)
...-.+ .+-....++|++.|-+
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 410 VIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHcCCchhhhHHHHhh
Confidence 322222 3334455556555544
No 174
>PRK11906 transcriptional regulator; Provisional
Probab=98.91 E-value=1.2e-07 Score=94.43 Aligned_cols=148 Identities=15% Similarity=0.098 Sum_probs=120.6
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCH
Q 005594 304 YNLGVAYGEMLK---FDMAIVFYELAF---HFNPHCAEACNNLGVIYKDR---------DNLDKAVECYQMALSIKPNFS 368 (689)
Q Consensus 304 ~~la~~~~~~g~---~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~ 368 (689)
+..|......+. .+.|+.+|.+++ .++|+.+.++..++.++... ....+|.+..+++++++|.++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 445555544443 467888888888 88888888888888887654 245678899999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHhhh
Q 005594 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNY 448 (689)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 448 (689)
.++..+|.++...++++.|...|++++.++|+.+.+++..|.+....|+.++|.+.++++++++|....+..-.+..-.|
T Consensus 339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~ 418 (458)
T PRK11906 339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMY 418 (458)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999876665443333244
Q ss_pred ccC
Q 005594 449 INE 451 (689)
Q Consensus 449 ~~~ 451 (689)
...
T Consensus 419 ~~~ 421 (458)
T PRK11906 419 VPN 421 (458)
T ss_pred cCC
Confidence 433
No 175
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=3.3e-08 Score=95.70 Aligned_cols=132 Identities=21% Similarity=0.213 Sum_probs=106.2
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC----C-----------HHHHHhHHHHHHHhCCHHHHHHHHHHHHHcC
Q 005594 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSG----N-----------VEAHIGKGICLQMQNMGRLAFDSFSEAVKLD 112 (689)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 112 (689)
+...-..|+.+++.|+|..|...|++++..-.. + ..++.+++.|+.++++|.+|+..+.++|..+
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 344566789999999999999999998875321 1 2478899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCCh-HHHHHHHHHHHhh
Q 005594 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT-QDGIQKYYEALKI 186 (689)
Q Consensus 113 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~-~~A~~~~~~al~~ 186 (689)
|+|..+++..|.++...|+++.|+..|++++++.|+|..+...+..+ ..+...+ +...+.|..++..
T Consensus 288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l-------~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKL-------KQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999998774443332 2222222 3335566666654
No 176
>PRK15331 chaperone protein SicA; Provisional
Probab=98.91 E-value=2e-08 Score=85.57 Aligned_cols=100 Identities=10% Similarity=0.024 Sum_probs=64.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 005594 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410 (689)
Q Consensus 331 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 410 (689)
++..+..+..|.-++..|++++|...|+-....+|.+++.+..||.++..++++++|+..|..+..++++++...+..|.
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq 113 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence 33445555666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 005594 411 LYRDAGSISLAIDAYEQCLK 430 (689)
Q Consensus 411 ~~~~~g~~~~A~~~~~~al~ 430 (689)
|+..+|+.++|+.+|+.+++
T Consensus 114 C~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 66666666666666666665
No 177
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.89 E-value=8.8e-07 Score=81.15 Aligned_cols=191 Identities=16% Similarity=0.141 Sum_probs=136.9
Q ss_pred ccCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCH---H
Q 005594 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---C 117 (689)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~ 117 (689)
....+..++..|...++.|+|++|++.|+++....|.+ ..+.+.++.++++.+++++|+..+++.+++.|.++ .
T Consensus 30 ~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY 109 (254)
T COG4105 30 YNLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADY 109 (254)
T ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhH
Confidence 34578899999999999999999999999999988865 47899999999999999999999999999998765 4
Q ss_pred HHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCC
Q 005594 118 AHTHCGILYKDE--------GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189 (689)
Q Consensus 118 ~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 189 (689)
+++..|.+++.. .-..+|+..|+..+...|++.-+.... .=+..+...+
T Consensus 110 ~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~------------------~~i~~~~d~L----- 166 (254)
T COG4105 110 AYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAK------------------ARIVKLNDAL----- 166 (254)
T ss_pred HHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHH------------------HHHHHHHHHH-----
Confidence 677777776642 234567888889999999865331111 1111111111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 005594 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258 (689)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 258 (689)
+.--..+|..|.+.|.+-.|+..++.+++..|+. .+++..+..+|..+|-.++|.+.-.-.-...|++
T Consensus 167 -A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 167 -AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred -HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 2223456777777777777777777777765543 4566667777777777777766554444444444
No 178
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.89 E-value=1.1e-05 Score=77.31 Aligned_cols=294 Identities=15% Similarity=0.043 Sum_probs=187.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC--HHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHH
Q 005594 51 ALSYANILRSRNKFVDALALYEIVLEKDSGN--VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN-ACAHTHCGILYK 127 (689)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~ 127 (689)
-+..|.+....|+-..|.+.-.+.-+.-..+ +-++..-++.-+..|+++.|.+-|+.++. +|.. ...+..+-.-..
T Consensus 87 ALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAq 165 (531)
T COG3898 87 ALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQ 165 (531)
T ss_pred HHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHH
Confidence 3445666677788899998888876543333 44566667788889999999999998774 3322 122333333445
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhC---CCC-----HHHHHHHHH
Q 005594 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID---PHY-----APAYYNLGV 199 (689)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~-----~~~~~~la~ 199 (689)
..|..+.|+.+-+.+-...|...-+. ...-......|+++.|+++.+...... ++. ...+...+.
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~-------~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAA-------RATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHH-------HHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 68999999999999999999876653 223334566799999999987765442 221 111222222
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhc
Q 005594 200 VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279 (689)
Q Consensus 200 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~ 279 (689)
... ..+...|...-.++.++.|+....-..-+..+++.|+..++-.+++.+.+..|.-. ++..|... +.
T Consensus 239 s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~-----ia~lY~~a-----r~ 307 (531)
T COG3898 239 SLL-DADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD-----IALLYVRA-----RS 307 (531)
T ss_pred HHh-cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH-----HHHHHHHh-----cC
Confidence 222 23577788888888888888888888888888888888888888888888777532 12222211 11
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005594 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (689)
Q Consensus 280 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 359 (689)
|+ .++.-+++ .++...+.|++.+.....+..-+..|++..|..--+.
T Consensus 308 gd--ta~dRlkR-------------------------------a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aea 354 (531)
T COG3898 308 GD--TALDRLKR-------------------------------AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEA 354 (531)
T ss_pred CC--cHHHHHHH-------------------------------HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 11 11111111 2223344566666666666666666777777666666
Q ss_pred HHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Q 005594 360 ALSIKPNFSQSLNNLGVVYTVQ-GKMDAAAEMIEKAIAA 397 (689)
Q Consensus 360 al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 397 (689)
+....|.. .++..|+.+-... |+-.+...++-++++-
T Consensus 355 a~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 355 AAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 66666653 3445556655543 7777777777777764
No 179
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.88 E-value=6.3e-08 Score=92.39 Aligned_cols=106 Identities=25% Similarity=0.343 Sum_probs=83.8
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHH
Q 005594 334 AEACNNLGVIY-KDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYN 406 (689)
Q Consensus 334 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 406 (689)
....+..+..+ .+.|++++|+..|++.++..|+. +.+++.+|.+|+..|++++|+..|+++++..|++ +++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 45555566554 55688888888888888888877 4688888888888888888888888888877764 67888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhH
Q 005594 407 NLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (689)
Q Consensus 407 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (689)
.+|.++..+|++++|...|+++++..|+...+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 888888888888888888888888888876543
No 180
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=9.2e-05 Score=73.19 Aligned_cols=348 Identities=11% Similarity=0.033 Sum_probs=207.4
Q ss_pred HHHHHhHHHHHHHhC--CHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 005594 82 VEAHIGKGICLQMQN--MGRLAFDSFSEAVKLDPQN---ACAHTHCGILYK-DEGRLVEAAESYHKALSADPSYKPAAEC 155 (689)
Q Consensus 82 ~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~ 155 (689)
..++..+|..+...| +...++++++..+...|.. +.....+|.+++ ...+.+.|...++++..+...-+..+..
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv 86 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV 86 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence 356778888888888 8899999999999887764 445677776654 5789999999999998776554444444
Q ss_pred HHHHHHHhHHHHHHcC-ChHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HH
Q 005594 156 LAIVLTDLGTSLKLAG-NTQDGIQKYYEALKIDPHYA----PAYYNLGVVYSELMQYDTALGCYEKAALERPMY----AE 226 (689)
Q Consensus 156 ~a~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~ 226 (689)
.-.....++.++.... .+..+...+.+++++....+ ...+.+++++.-..++..|++.+.--.+....- ..
T Consensus 87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr 166 (629)
T KOG2300|consen 87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLR 166 (629)
T ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHH
Confidence 4455666777777766 88999999999999977654 456788999999999999988854322111100 11
Q ss_pred HHHHH--HHHHHHcCCHHH---HHHHHHHHHhcCCCcHHHHhhHHHHHHHh-----------------------------
Q 005594 227 AYCNM--GVIYKNRGDLES---AIACYERCLAVSPNFEIAKNNMAIALTDL----------------------------- 272 (689)
Q Consensus 227 ~~~~l--a~~~~~~g~~~~---A~~~~~~al~~~~~~~~~~~~~~~~~~~l----------------------------- 272 (689)
..+.+ +.++...-+..+ +.....+..+....++.-...+-..|..+
T Consensus 167 ~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtis 246 (629)
T KOG2300|consen 167 MLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTIS 246 (629)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccC
Confidence 11111 122222222222 22222222222111111111110111000
Q ss_pred -----------------------------------hhhhhhcCCHHHHHHHHHHHHhhCCC------CH--------HHH
Q 005594 273 -----------------------------------GTKVKLEGDINQGVAYYKKALYYNWH------YA--------DAM 303 (689)
Q Consensus 273 -----------------------------------~~~~~~~~~~~~A~~~~~~al~~~~~------~~--------~~~ 303 (689)
-..-...|-+++|.++-++++....+ .. ..+
T Consensus 247 t~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~L 326 (629)
T KOG2300|consen 247 TSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILL 326 (629)
T ss_pred CCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 00011234555666665555543211 11 123
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhh---CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHH
Q 005594 304 YNLGVAYGEMLKFDMAIVFYELAFHF---NPH-------CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQS 370 (689)
Q Consensus 304 ~~la~~~~~~g~~~~A~~~~~~al~~---~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~ 370 (689)
-.+..+-.-.|++.+|++....+.+. .|. .+.+...+|.....-+.++.|...|..|.++.... +-+
T Consensus 327 E~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~ 406 (629)
T KOG2300|consen 327 EHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFC 406 (629)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34455556677777777777666554 233 24556667777777778888888888887764322 234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005594 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----------AEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (689)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (689)
..++|..|.+.|+-+.-.+.++ .+.|.+ ..+++..|...+.++++.||...+++.++..
T Consensus 407 nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 407 NLNLAISYLRIGDAEDLYKALD---LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHhHHHHHHHhccHHHHHHHHH---hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 5677888888766544333333 234432 3466777777888888888888888888775
No 181
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=2.1e-06 Score=78.20 Aligned_cols=256 Identities=16% Similarity=0.099 Sum_probs=169.4
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005594 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI 245 (689)
Q Consensus 166 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 245 (689)
-++..|+|..++..-++.-... ...+....+.+.|..+|++...+.-....- .....+...++.....-++.++-+
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~~ 92 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSIL 92 (299)
T ss_pred HHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHHH
Confidence 3445588888877766654433 667777788888888888776555443321 122344455555555555555555
Q ss_pred HHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005594 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325 (689)
Q Consensus 246 ~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 325 (689)
.-+.+.+........ ......-+.++...+++++|+...... .+.++...-..++.++.+++-|.+.+++
T Consensus 93 ~~l~E~~a~~~~~sn-----~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 93 ASLYELVADSTDGSN-----LIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHhhccchh-----HHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443332221111 112223345556678888888877663 2445666666778888888888888888
Q ss_pred HHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 005594 326 AFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 401 (689)
Q Consensus 326 al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 401 (689)
+.+++.+. .+..||..+.+ .+++.+|.-+|+..-+..|..+..+..++.+...+|++++|...++.++..++++
T Consensus 163 mq~ided~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 163 MQQIDEDA--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD 240 (299)
T ss_pred HHccchHH--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence 88776553 33334444332 3468888888888888778888888888888999999999999999999988888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCCCChh
Q 005594 402 AEAYNNLGVLYRDAGSISLAID-AYEQCLKIDPDSRN 437 (689)
Q Consensus 402 ~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~~ 437 (689)
++++.++-.+-...|...++.+ ...+....+|+++.
T Consensus 241 petL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 241 PETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 9988888888888887766554 44555566777653
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.86 E-value=1.1e-07 Score=100.03 Aligned_cols=144 Identities=16% Similarity=0.062 Sum_probs=108.8
Q ss_pred HHhCCCCHHH--HHhHHHHHHHhCC---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHH
Q 005594 75 LEKDSGNVEA--HIGKGICLQMQNM---GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG--------RLVEAAESYHK 141 (689)
Q Consensus 75 l~~~p~~~~~--~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~ 141 (689)
...-|.+..+ ++..|..+...++ ..+|+.+|+++++++|++..++..++.++.... +..++....++
T Consensus 330 ~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 330 QQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred hccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3455666554 4556666665544 678999999999999999888888877765432 34556666667
Q ss_pred HHhc--CCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005594 142 ALSA--DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219 (689)
Q Consensus 142 al~~--~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 219 (689)
++.+ ++.++.. +..+|......|++++|...+++++.++| +..++..+|.++...|++++|++.|++++.
T Consensus 410 a~al~~~~~~~~~-------~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 410 IVALPELNVLPRI-------YEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hhhcccCcCChHH-------HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6664 4444433 55566667777999999999999999998 478999999999999999999999999999
Q ss_pred hCCCCHH
Q 005594 220 ERPMYAE 226 (689)
Q Consensus 220 ~~p~~~~ 226 (689)
++|.++.
T Consensus 482 L~P~~pt 488 (517)
T PRK10153 482 LRPGENT 488 (517)
T ss_pred cCCCCch
Confidence 9998775
No 183
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=7.5e-06 Score=80.62 Aligned_cols=263 Identities=14% Similarity=0.103 Sum_probs=183.4
Q ss_pred cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHcCC
Q 005594 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA-ALERPM--------YAEAYCNMGVIYKNRGD 240 (689)
Q Consensus 170 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~~~~~~la~~~~~~g~ 240 (689)
..+...+..-.+.+.....+.+.+....++.++..|++.+|.+.+... +...+. ..-.|.++|.++++.|.
T Consensus 219 ~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~ 298 (696)
T KOG2471|consen 219 TRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGC 298 (696)
T ss_pred HHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhh
Confidence 334444444444444445566788888899999999999999988664 222222 22356899999999999
Q ss_pred HHHHHHHHHHHHhc-----------CCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 005594 241 LESAIACYERCLAV-----------SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 309 (689)
Q Consensus 241 ~~~A~~~~~~al~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 309 (689)
|.-+..+|.++++. .|...........++++.|..+...|++-.|.++|.++....-.++..|..++.+
T Consensus 299 y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEc 378 (696)
T KOG2471|consen 299 YQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAEC 378 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 99999999999961 1111122223345677888888889999999999999999999999999999988
Q ss_pred HHhcCC-------------------------------------------------HHHHHHHHHHHHhhC----------
Q 005594 310 YGEMLK-------------------------------------------------FDMAIVFYELAFHFN---------- 330 (689)
Q Consensus 310 ~~~~g~-------------------------------------------------~~~A~~~~~~al~~~---------- 330 (689)
.+...+ .+-|.-+++.++-+-
T Consensus 379 Cima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~ 458 (696)
T KOG2471|consen 379 CIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSIL 458 (696)
T ss_pred HHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhh
Confidence 753211 133455555554321
Q ss_pred -----------------------------------C-CC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594 331 -----------------------------------P-HC-----------AEACNNLGVIYKDRDNLDKAVECYQMALSI 363 (689)
Q Consensus 331 -----------------------------------p-~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 363 (689)
| .. ..++.+.+.+-..+|+.-.|+..-.+.++.
T Consensus 459 ~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~ 538 (696)
T KOG2471|consen 459 SVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQL 538 (696)
T ss_pred hhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhh
Confidence 0 00 124456677778899999999999988876
Q ss_pred CCCCHHHHHHHHHHH-----HHcCCHHHHHHHHHHHH------H-----------------hCCC----------c----
Q 005594 364 KPNFSQSLNNLGVVY-----TVQGKMDAAAEMIEKAI------A-----------------ANPT----------Y---- 401 (689)
Q Consensus 364 ~p~~~~~~~~la~~~-----~~~g~~~~A~~~~~~al------~-----------------~~p~----------~---- 401 (689)
|+...++..||.+| ..+.+..+|...+.--+ . ++|. .
T Consensus 539 -~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~A 617 (696)
T KOG2471|consen 539 -ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEA 617 (696)
T ss_pred -hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHH
Confidence 55566666666655 45677777776665411 0 0110 0
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005594 402 -AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433 (689)
Q Consensus 402 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 433 (689)
...+++||.++.-+|++++|..++..+..+-+
T Consensus 618 r~v~~~nLa~a~alq~~~dqAk~ll~~aatl~h 650 (696)
T KOG2471|consen 618 RGVLFANLAAALALQGHHDQAKSLLTHAATLLH 650 (696)
T ss_pred hHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhh
Confidence 23678999999999999999999999999888
No 184
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.83 E-value=2.7e-09 Score=99.44 Aligned_cols=241 Identities=15% Similarity=0.060 Sum_probs=175.1
Q ss_pred HHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005594 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (689)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (689)
+...|+.|+.+|.|++|+.+|.+++..+|.++..+.+.+.+|++++++..|...++.++.++.....+|...+.+-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q 005594 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 319 (689)
Q Consensus 240 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 319 (689)
...+|.+.++.++.+.|++.+....++. +. ...++. -+.+..|. +-.|
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~----i~-------Sl~E~~----I~~KsT~G-----------------~~~A 227 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLAR----IN-------SLRERK----IATKSTPG-----------------FTPA 227 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHH----hc-------chHhhh----HHhhcCCC-----------------CCcc
Confidence 9999999999999999997654433222 11 111110 01111111 1122
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005594 320 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399 (689)
Q Consensus 320 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 399 (689)
.+-..+++.+ -.-|..+...|.++.++.++.+-+....++...-.+ +..+.+..++++|+...-+++..+|
T Consensus 228 ~Q~~~Q~l~~--------K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~ 298 (536)
T KOG4648|consen 228 RQGMIQILPI--------KKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKP 298 (536)
T ss_pred ccchhhhccc--------cCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCC
Confidence 2222222211 112455556677777777776666554444433333 5666777778888888888877777
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhh
Q 005594 400 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (689)
Q Consensus 400 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (689)
.........+.+-.-.|...++...++.++.+.|.+..+...
T Consensus 299 s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~ 340 (536)
T KOG4648|consen 299 TPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKET 340 (536)
T ss_pred CcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccchhh
Confidence 766666666666667778888889999999999988766544
No 185
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.80 E-value=1.9e-07 Score=93.71 Aligned_cols=121 Identities=23% Similarity=0.239 Sum_probs=108.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 005594 305 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 384 (689)
Q Consensus 305 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 384 (689)
.+-..+...++++.|+..+++..+.+|+ +...++.++...++..+|++.+.++++..|.+...+...+..+...+++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 3455566678899999999999888865 5667899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594 385 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (689)
Q Consensus 385 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (689)
+.|++..+++++..|++...|+.|+.+|..+|++++|+..+..+
T Consensus 251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999776643
No 186
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=3.3e-06 Score=83.04 Aligned_cols=158 Identities=12% Similarity=0.055 Sum_probs=124.7
Q ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHH-HHcCCC--------CH
Q 005594 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA-VKLDPQ--------NA 116 (689)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~ 116 (689)
...+........+++..+...+....+.++....+.+.+++..+..++..|++.+|.+.+... +...|. .-
T Consensus 204 ~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~c 283 (696)
T KOG2471|consen 204 LKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSC 283 (696)
T ss_pred cchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhh
Confidence 344455566677788888888988888888888889999999999999999999999987643 222222 23
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------CC--CCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHh
Q 005594 117 CAHTHCGILYKDEGRLVEAAESYHKALSA---------DP--SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185 (689)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p--~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~ 185 (689)
.+|.++|.++++.|.|.-+..+|.++++. .| ...-....-..++++.|..+...|+.-.|.++|.++..
T Consensus 284 if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~ 363 (696)
T KOG2471|consen 284 IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH 363 (696)
T ss_pred eeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence 35688999999999999999999999961 11 11111222345689999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHH
Q 005594 186 IDPHYAPAYYNLGVVYSE 203 (689)
Q Consensus 186 ~~~~~~~~~~~la~~~~~ 203 (689)
....++..|..++.+...
T Consensus 364 vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 364 VFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHhcCcHHHHHHHHHHHH
Confidence 999999999999988764
No 187
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.78 E-value=0.00025 Score=71.37 Aligned_cols=371 Identities=15% Similarity=0.053 Sum_probs=185.2
Q ss_pred HHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 005594 72 EIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151 (689)
Q Consensus 72 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 151 (689)
++-++.+|.+.++|+.+..-+..+ -+++..+.|++.+...|..+.+|...........+|+.-..+|.+++..--+ .+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lD 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LD 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-Hh
Confidence 555677777777777777766555 7777777777777777777777777777777777777777777777653222 22
Q ss_pred HHHHHHHHHHHhHHHHHHcCChHHHH----HHHHHHHh---hCCCCHHHHHHHHHHHH---------HcCCHHHHHHHHH
Q 005594 152 AAECLAIVLTDLGTSLKLAGNTQDGI----QKYYEALK---IDPHYAPAYYNLGVVYS---------ELMQYDTALGCYE 215 (689)
Q Consensus 152 ~~~~~a~~~~~l~~~~~~~~~~~~A~----~~~~~al~---~~~~~~~~~~~la~~~~---------~~g~~~~A~~~~~ 215 (689)
.|.. | +..+-...++...+. +.|+-++. .++.....|...+..+. ++.+.+.-.+.|+
T Consensus 88 LW~l----Y--l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYq 161 (656)
T KOG1914|consen 88 LWKL----Y--LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQ 161 (656)
T ss_pred HHHH----H--HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHH
Confidence 2111 1 111111222222222 22222222 24444555554443322 2335556667777
Q ss_pred HHHHhCCCCHHH-H-------------HHHHHHHHHcCCHHHHHHHHHHHHhcC-----------CCcHHHHhhHHHHHH
Q 005594 216 KAALERPMYAEA-Y-------------CNMGVIYKNRGDLESAIACYERCLAVS-----------PNFEIAKNNMAIALT 270 (689)
Q Consensus 216 ~al~~~p~~~~~-~-------------~~la~~~~~~g~~~~A~~~~~~al~~~-----------~~~~~~~~~~~~~~~ 270 (689)
+++..--.+.+- | ...-.+-.....|..|...+++...+. |.....-......+.
T Consensus 162 ral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~ 241 (656)
T KOG1914|consen 162 RALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWK 241 (656)
T ss_pred HHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHH
Confidence 776543222211 1 111112223344556666666554331 111111111111111
Q ss_pred Hhhhhhh------hcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHh
Q 005594 271 DLGTKVK------LEGD--INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK--------------FDMAIVFYELAFH 328 (689)
Q Consensus 271 ~l~~~~~------~~~~--~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~ 328 (689)
++-.... ..+. -....-.+++++..-+-.+++|+..+..+...++ -+++..+|++++.
T Consensus 242 n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~ 321 (656)
T KOG1914|consen 242 NWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIE 321 (656)
T ss_pred HHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 1111100 0111 1223345666776667777777766665555555 6777788887776
Q ss_pred hC-CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 005594 329 FN-PHCAEACNNLGVIYKDRD---NLDKAVECYQMALSIKPNFSQ-SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403 (689)
Q Consensus 329 ~~-p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 403 (689)
.- ..+...++.++..-...- +++.....+++++.+...++. ++..+-..-.+..-.+.|...|.++-+..-....
T Consensus 322 ~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hh 401 (656)
T KOG1914|consen 322 GLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHH 401 (656)
T ss_pred HHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcch
Confidence 42 223344444444333222 255666667776665433322 3444444444444556666666666554332222
Q ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHhhhcc
Q 005594 404 AYNNLGVL-YRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN 450 (689)
Q Consensus 404 ~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 450 (689)
++..-|.+ |.-.++.+-|...|+-.++..++.+.....++.-+.++.
T Consensus 402 VfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lN 449 (656)
T KOG1914|consen 402 VFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLN 449 (656)
T ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC
Confidence 22222222 344566666666666666666666665555444444443
No 188
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=8.8e-08 Score=82.72 Aligned_cols=105 Identities=27% Similarity=0.314 Sum_probs=91.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 005594 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ-----SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (689)
Q Consensus 337 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 411 (689)
+-.-|.-++..|+|++|..-|..|+.+.|..+. .+.+.|.++.+++.++.|+....++++++|.+..++...|.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 334567778888899999999999888887643 678889999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHhh
Q 005594 412 YRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (689)
Q Consensus 412 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (689)
|.++.++++|++.|++.++.+|....++..
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRREAREA 207 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence 999999999999999999999998877654
No 189
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.77 E-value=0.00028 Score=69.53 Aligned_cols=373 Identities=14% Similarity=0.047 Sum_probs=207.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH-----HHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005594 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNV-----EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (689)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (689)
+...|..+.+++++.+|.++|.++.+...+++ +.+.++-...+-+++.+.-...+...-+..|..+....-.|..
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~ 88 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALV 88 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 44578889999999999999999988655543 3444444445566777777777777777888888888889999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHH------HHHHHHHH--HHhHHHHHHcCChHHHHHHHHHHHhhC-C----CCHH
Q 005594 126 YKDEGRLVEAAESYHKALSADPSYKPA------AECLAIVL--TDLGTSLKLAGNTQDGIQKYYEALKID-P----HYAP 192 (689)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~~a~~~--~~l~~~~~~~~~~~~A~~~~~~al~~~-~----~~~~ 192 (689)
.++.+.+.+|++.+......-...... .......+ ...+.++...|.+.++...+++.+..- + -+.+
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 999999999999987776542222111 11111111 235778889999999999999887652 1 2333
Q ss_pred HHH----HHHHHHHH----cCCHHHHHHHHHHHH-------Hh--------CCCC---------------------HHHH
Q 005594 193 AYY----NLGVVYSE----LMQYDTALGCYEKAA-------LE--------RPMY---------------------AEAY 228 (689)
Q Consensus 193 ~~~----~la~~~~~----~g~~~~A~~~~~~al-------~~--------~p~~---------------------~~~~ 228 (689)
.+. .+|+.|+- ....+-+..+|+.++ .. .|.. ..++
T Consensus 169 ~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l 248 (549)
T PF07079_consen 169 MYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQIL 248 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHH
Confidence 333 34444431 122222233333221 10 1110 0111
Q ss_pred HHHHHHHH--------------HcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHh
Q 005594 229 CNMGVIYK--------------NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294 (689)
Q Consensus 229 ~~la~~~~--------------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 294 (689)
.+..+-|. -..+.+++....+..... +.......+...+..+-....++++..+|.+++.-...
T Consensus 249 ~~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce~ia~~--~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 249 ENWENFYVHPNYDLVIEPLKQQFMSDPEQVGHFCEAIASS--KIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHhhccCCchhHHHHHHHHHHhcChHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 11100000 011223333332222211 11112222222222222233345566666666655555
Q ss_pred hCCCCHH-----------------------------------------------HHHHHHHHHHhcCC-HHHHHHHHHHH
Q 005594 295 YNWHYAD-----------------------------------------------AMYNLGVAYGEMLK-FDMAIVFYELA 326 (689)
Q Consensus 295 ~~~~~~~-----------------------------------------------~~~~la~~~~~~g~-~~~A~~~~~~a 326 (689)
.+|+... -+..-|.-+.+.|. -++|+..++.+
T Consensus 327 ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~i 406 (549)
T PF07079_consen 327 LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLI 406 (549)
T ss_pred cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 5554321 12223344445554 66777777777
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhc---------CC---CCHHHHHHH--HHHHHHcCCHHHHHHH
Q 005594 327 FHFNPHCAEACNNLGVIYKDRDNLDKAVE--CYQMALSI---------KP---NFSQSLNNL--GVVYTVQGKMDAAAEM 390 (689)
Q Consensus 327 l~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~---------~p---~~~~~~~~l--a~~~~~~g~~~~A~~~ 390 (689)
++..+.+.+..+..-... ...|.+|+. .+-+.+++ .| .+.+.-+.| |..++.+|++.++.-+
T Consensus 407 l~ft~yD~ec~n~v~~fv--Kq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~y 484 (549)
T PF07079_consen 407 LQFTNYDIECENIVFLFV--KQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLY 484 (549)
T ss_pred HHhccccHHHHHHHHHHH--HHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 777666654332221111 112222221 11111111 11 223333444 3446779999999988
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594 391 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (689)
Q Consensus 391 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (689)
-.=..++.| ++.++..+|.++....+|++|..++...
T Consensus 485 s~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 485 SSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 888888999 7999999999999999999999988753
No 190
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.76 E-value=2.5e-07 Score=77.18 Aligned_cols=108 Identities=13% Similarity=0.148 Sum_probs=97.1
Q ss_pred cCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCH---HH
Q 005594 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CA 118 (689)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~ 118 (689)
...+..++..|...++.|+|.+|++.|+.+....|.. ..+.+.++.+|+..+++++|+..+++.++++|.++ .+
T Consensus 7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 3567889999999999999999999999999988864 57899999999999999999999999999999875 57
Q ss_pred HHHHHHHHHHcCC---------------HHHHHHHHHHHHhcCCCCHHH
Q 005594 119 HTHCGILYKDEGR---------------LVEAAESYHKALSADPSYKPA 152 (689)
Q Consensus 119 ~~~la~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~ 152 (689)
++..|.++..+.. ..+|...|++.++..|++.-+
T Consensus 87 ~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 87 YYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 8899999888876 889999999999999997654
No 191
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.75 E-value=0.00038 Score=70.09 Aligned_cols=419 Identities=13% Similarity=0.060 Sum_probs=266.8
Q ss_pred cccccCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHH
Q 005594 41 STLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120 (689)
Q Consensus 41 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (689)
....+.+.+.|..+.+.+-.+ .+++....|++.+...|..+.+|.......+..++|+.-..+|.++|..--+ .+.|.
T Consensus 13 ie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lDLW~ 90 (656)
T KOG1914|consen 13 IEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LDLWK 90 (656)
T ss_pred HhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-HhHHH
Confidence 345568899999999988777 9999999999999999999999999999999999999999999999875332 44443
Q ss_pred H-HHHHHHHcCCHHHHHHHHHHH----Hh---cCCCCHHHHHHHHHHHHH---hHHHHHHcCChHHHHHHHHHHHhhCCC
Q 005594 121 H-CGILYKDEGRLVEAAESYHKA----LS---ADPSYKPAAECLAIVLTD---LGTSLKLAGNTQDGIQKYYEALKIDPH 189 (689)
Q Consensus 121 ~-la~~~~~~g~~~~A~~~~~~a----l~---~~p~~~~~~~~~a~~~~~---l~~~~~~~~~~~~A~~~~~~al~~~~~ 189 (689)
. +..+-...|+...+....-++ +. .++.....|......+.. .|. +..+.+.+.-.+.|++++...-.
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk-~ee~QRI~~vRriYqral~tPm~ 169 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGK-YEENQRITAVRRIYQRALVTPMH 169 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHccccccc-HHHHHHHHHHHHHHHHHhcCccc
Confidence 2 333444455544443333333 32 344444443333222211 222 22334667777888888875433
Q ss_pred CHHHHHH------------HH--HHHHHcCCHHHHHHHHHHHHHh-------CCC-----C------HHHHHHHHHHHHH
Q 005594 190 YAPAYYN------------LG--VVYSELMQYDTALGCYEKAALE-------RPM-----Y------AEAYCNMGVIYKN 237 (689)
Q Consensus 190 ~~~~~~~------------la--~~~~~~g~~~~A~~~~~~al~~-------~p~-----~------~~~~~~la~~~~~ 237 (689)
+.+-+.+ .| .+-.....|..|...+++.... +|. . .+.|.++...-..
T Consensus 170 nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEks 249 (656)
T KOG1914|consen 170 NLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKS 249 (656)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhc
Confidence 3322111 11 1122334566676666665432 111 1 1233333322211
Q ss_pred c------CC--HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCC-------HHHHHHHHHHHHhhCCC-CHH
Q 005594 238 R------GD--LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD-------INQGVAYYKKALYYNWH-YAD 301 (689)
Q Consensus 238 ~------g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~al~~~~~-~~~ 301 (689)
. |. ...-.-.+++++..-+-.++.|+..+..+...+.++...|+ .+++..+|++++..... +..
T Consensus 250 NpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~ 329 (656)
T KOG1914|consen 250 NPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKL 329 (656)
T ss_pred CCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11 12233467788888888888888888888887777766665 45667777777654322 333
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005594 302 AMYNLGVAYGEML---KFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 377 (689)
Q Consensus 302 ~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 377 (689)
.++.++..-...- +++.--..+++++.+...+ .-++..+-..-.+..-.+.|...|.++-+.......++..-|.+
T Consensus 330 Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~m 409 (656)
T KOG1914|consen 330 LYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALM 409 (656)
T ss_pred HHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHH
Confidence 4444444333333 3677778888888764333 34556666666677778889999999987654444444444443
Q ss_pred -HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHhhHHHHhhhccCCCh
Q 005594 378 -YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI--DPDSRNAGQNRLLAMNYINEGHD 454 (689)
Q Consensus 378 -~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~ 454 (689)
|...++.+-|...|+-.++..++.+..-......+...++-..|...|++++.- .|+...-.+..++..- ..-|+-
T Consensus 410 Ey~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yE-S~vGdL 488 (656)
T KOG1914|consen 410 EYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYE-SNVGDL 488 (656)
T ss_pred HHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHH-HhcccH
Confidence 456899999999999999999999999999999999999999999999999987 5555444444443322 134555
Q ss_pred HHHHHHHHH
Q 005594 455 DKLFEAHRD 463 (689)
Q Consensus 455 ~~~~~~~~~ 463 (689)
....+.-++
T Consensus 489 ~si~~lekR 497 (656)
T KOG1914|consen 489 NSILKLEKR 497 (656)
T ss_pred HHHHHHHHH
Confidence 555544443
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.75 E-value=3.2e-07 Score=75.50 Aligned_cols=94 Identities=21% Similarity=0.193 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHH
Q 005594 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN---FSQSLNNLG 375 (689)
Q Consensus 302 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la 375 (689)
+++.+|.++-..|+.++|+..|++++....+. ..++..+|..+...|++++|+..+++++...|+ +..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 44555555666666666666666665543222 345555666666666666666666666555555 444555555
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 005594 376 VVYTVQGKMDAAAEMIEKAI 395 (689)
Q Consensus 376 ~~~~~~g~~~~A~~~~~~al 395 (689)
.++...|++++|+..+-.++
T Consensus 83 l~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 55556666666655555444
No 193
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=1.9e-07 Score=80.67 Aligned_cols=108 Identities=23% Similarity=0.240 Sum_probs=97.1
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH-----HHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 005594 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNV-----EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (689)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (689)
++.+-..|+.++..|+|++|..-|..+|...|... ..+.+.|.++++++.++.|++.+.++++++|.+..++...
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 34455678899999999999999999999988743 4677899999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 005594 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155 (689)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 155 (689)
+.+|.++..+++|+..|+++++.+|....+...
T Consensus 175 Aeayek~ek~eealeDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALEDYKKILESDPSRREAREA 207 (271)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence 999999999999999999999999998766443
No 194
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.74 E-value=3.6e-08 Score=73.46 Aligned_cols=67 Identities=22% Similarity=0.253 Sum_probs=55.8
Q ss_pred HHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005594 58 LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (689)
Q Consensus 58 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (689)
++..|++++|+..|+++++.+|++.++++.+|.++...|++++|...+++++..+|+++..+..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3577888888888888888888888888888888888888888888888888888888777766654
No 195
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.74 E-value=5.2e-05 Score=80.62 Aligned_cols=227 Identities=11% Similarity=-0.015 Sum_probs=167.7
Q ss_pred HHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCC
Q 005594 93 QMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172 (689)
Q Consensus 93 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~ 172 (689)
...+++.+|+....+.++..|+...+....|..+.++|+.++|..+++..-...+++... +..+-.+|..+++
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~t-------Lq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLT-------LQFLQNVYRDLGK 92 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHH-------HHHHHHHHHHHhh
Confidence 457889999999999999999999999999999999999999998887766666665444 5667778888999
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHH---------
Q 005594 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN-RGDLE--------- 242 (689)
Q Consensus 173 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~--------- 242 (689)
.++|..+|++++..+|+ .+..+.+-.+|.+.+.|.+-.+.--+..+..|..+........+..+ ....+
T Consensus 93 ~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 93 LDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred hhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 99999999999999999 88888999999999999887777777777888876654444444333 32222
Q ss_pred HHHHHHHHHHhcC-CCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHH-Hhh-CCCCHHHHHHHHHHHHhcCCHHHH
Q 005594 243 SAIACYERCLAVS-PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA-LYY-NWHYADAMYNLGVAYGEMLKFDMA 319 (689)
Q Consensus 243 ~A~~~~~~al~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-l~~-~~~~~~~~~~la~~~~~~g~~~~A 319 (689)
-|....++.++.. +-.. .+..... -.+...++.+++|.+.+..- .+. .+.+..........+...+++.+-
T Consensus 172 LA~~m~~~~l~~~gk~~s-----~aE~~Ly-l~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l 245 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIES-----EAEIILY-LLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQEL 245 (932)
T ss_pred HHHHHHHHHhccCCccch-----HHHHHHH-HHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHH
Confidence 3455566666555 1111 1111111 12334477899999998433 333 344445555667788888999999
Q ss_pred HHHHHHHHhhCCCC
Q 005594 320 IVFYELAFHFNPHC 333 (689)
Q Consensus 320 ~~~~~~al~~~p~~ 333 (689)
.+...+++...+++
T Consensus 246 ~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 246 FELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHHHhCCcc
Confidence 99999999998887
No 196
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.72 E-value=3.3e-07 Score=92.04 Aligned_cols=115 Identities=17% Similarity=0.147 Sum_probs=107.0
Q ss_pred hhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005594 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 356 (689)
Q Consensus 277 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 356 (689)
...++++.|+..+++..+.+|+ +...++.++...++..+|++.+.++++..|.+...+...+..+...++++.|+++
T Consensus 180 ~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~i 256 (395)
T PF09295_consen 180 SLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEI 256 (395)
T ss_pred hhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3467899999999999988865 6677899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594 357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 394 (689)
Q Consensus 357 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 394 (689)
.++++++.|++...|..|+.+|...|++++|+..++.+
T Consensus 257 Ak~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 257 AKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999877754
No 197
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.71 E-value=8.5e-06 Score=74.81 Aligned_cols=173 Identities=17% Similarity=0.109 Sum_probs=127.3
Q ss_pred CHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005594 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (689)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a 157 (689)
.+..++..|...++.|++++|++.|+.+...+|.. ..+...++..+++.+++++|+...++-+.+.|.++++..
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY--- 109 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADY--- 109 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhH---
Confidence 46789999999999999999999999999998865 568899999999999999999999999999999887633
Q ss_pred HHHHHhHHHHHHc--------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005594 158 IVLTDLGTSLKLA--------GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229 (689)
Q Consensus 158 ~~~~~l~~~~~~~--------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 229 (689)
+++..|.++... .-..+|+..|+..++..|++.-+-..... +..+... ...--.
T Consensus 110 -~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~-----------i~~~~d~------LA~~Em 171 (254)
T COG4105 110 -AYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR-----------IVKLNDA------LAGHEM 171 (254)
T ss_pred -HHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH-----------HHHHHHH------HHHHHH
Confidence 355555554332 22356677777777777775332211111 1111111 123345
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---HHHhhHHHHHHHhhh
Q 005594 230 NMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIALTDLGT 274 (689)
Q Consensus 230 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~l~~ 274 (689)
.+|..|.+.|.+..|+.-++.+++..|+.. +++..+..++..+|.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl 219 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGL 219 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCC
Confidence 678999999999999999999999887754 455566677777764
No 198
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.68 E-value=6.2e-07 Score=73.83 Aligned_cols=96 Identities=20% Similarity=0.191 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHH
Q 005594 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT---YAEAYNNL 408 (689)
Q Consensus 335 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l 408 (689)
.+++.+|.++-..|+.++|+.+|++++...... ..++..+|..+..+|++++|+..+++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 578899999999999999999999999975444 558999999999999999999999999999888 77888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 005594 409 GVLYRDAGSISLAIDAYEQCLK 430 (689)
Q Consensus 409 a~~~~~~g~~~~A~~~~~~al~ 430 (689)
+.++...|+.++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988775
No 199
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.65 E-value=6.4e-07 Score=82.93 Aligned_cols=105 Identities=21% Similarity=0.245 Sum_probs=91.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHH
Q 005594 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNLGV 410 (689)
Q Consensus 337 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 410 (689)
.++.|.-+++.|+|.+|...|..-++..|+. +.++++||.+++.+|++++|...|..+++..|++ +++++.||.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 6777777888889999999999999888876 5689999999999999999999999999887765 688999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHhh
Q 005594 411 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (689)
Q Consensus 411 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (689)
+..++|+.++|...|+++++..|+...+...
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999999999999999999998776544
No 200
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.63 E-value=1.1e-07 Score=70.90 Aligned_cols=56 Identities=29% Similarity=0.460 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 005594 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403 (689)
Q Consensus 348 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 403 (689)
|++++|++.|++++..+|++..++..+|.++.+.|++++|...+++++..+|+++.
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 60 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPE 60 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHH
Confidence 33444444444444444444444444444444444444444444444444443333
No 201
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.62 E-value=1.8e-07 Score=92.92 Aligned_cols=68 Identities=21% Similarity=0.305 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005594 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS---LNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (689)
Q Consensus 330 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (689)
+|+++..++++|.+|...|++++|+..|+++++++|++.++ ++++|.+|..+|++++|+.++++++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45555556666666666666666666666666665555533 555555555555555555555555554
No 202
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.60 E-value=9.7e-06 Score=69.56 Aligned_cols=148 Identities=18% Similarity=0.161 Sum_probs=123.2
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005594 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH-FNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (689)
Q Consensus 281 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 359 (689)
+.+....-..+.+...|. ..-.+.+|..+.+.|++.+|...|++++. +..+++..+..++...+..+++..|...+++
T Consensus 71 dP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 71 DPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred ChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 444444444555555554 34467899999999999999999999986 4678889999999999999999999999999
Q ss_pred HHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005594 360 ALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (689)
Q Consensus 360 al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (689)
..+.+|. .++....+|.++...|++.+|...|+.++...|+ +++....+..+.++|+..+|...+....+
T Consensus 150 l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 150 LMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 9998876 4678888999999999999999999999999987 77888889999999999988877766543
No 203
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.59 E-value=3.1e-07 Score=69.46 Aligned_cols=69 Identities=22% Similarity=0.322 Sum_probs=50.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 005594 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (689)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (689)
..+++..++|++|++.+++++..+|+++..+..+|.++...|++++|+..|+++++..|+++.+....+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 456677777777777777777777777777777777777777777777777777777777766554443
No 204
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.56 E-value=4.2e-07 Score=68.76 Aligned_cols=63 Identities=24% Similarity=0.399 Sum_probs=34.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 005594 376 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (689)
Q Consensus 376 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (689)
.+|...+++++|++++++++.++|+++..+..+|.++..+|++++|.+.++++++..|+++.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 345555555555555555555555555555555555555555555555555555555555444
No 205
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.55 E-value=1.2e-05 Score=80.97 Aligned_cols=105 Identities=25% Similarity=0.319 Sum_probs=92.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 005594 342 VIYKDRDNLDKAVECYQMALSIKPNFSQ-SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420 (689)
Q Consensus 342 ~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 420 (689)
......|+...|+.++..|+...|.... ...+|+.++.+.|...+|-..+.+++.+....+-.++.+|..+..+.+.+.
T Consensus 615 lywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 615 LYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred ceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 3344579999999999999999887644 678999999999999999999999999998888999999999999999999
Q ss_pred HHHHHHHHHhcCCCChhhHhhHHHHh
Q 005594 421 AIDAYEQCLKIDPDSRNAGQNRLLAM 446 (689)
Q Consensus 421 A~~~~~~al~~~p~~~~~~~~~~~~~ 446 (689)
|++.|++|++++|+++.....+.+..
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 99999999999999988776654443
No 206
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.54 E-value=3.7e-06 Score=70.22 Aligned_cols=103 Identities=21% Similarity=0.231 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHH
Q 005594 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA---EAYNNLG 409 (689)
Q Consensus 336 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la 409 (689)
.++.-|...++.|+|++|++.|+......|.. ..+.+.++.+|++.+++++|+..+++.++++|+++ -+++..|
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 33444444444444444444444444443332 23444444444444444444444444444444432 2344444
Q ss_pred HHHHHcCC---------------HHHHHHHHHHHHhcCCCChhh
Q 005594 410 VLYRDAGS---------------ISLAIDAYEQCLKIDPDSRNA 438 (689)
Q Consensus 410 ~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~ 438 (689)
.++..+.. ..+|...|++.++..|++.-+
T Consensus 92 L~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 92 LSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 44444433 668888899999998887654
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=0.00013 Score=66.47 Aligned_cols=227 Identities=14% Similarity=0.128 Sum_probs=164.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------CCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005594 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALER-------------PMY------AEAYCNMGVIYKNRGDLESAIACYER 250 (689)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------p~~------~~~~~~la~~~~~~g~~~~A~~~~~~ 250 (689)
....|...-.++.++...++|..-++..-+.+ |+. .......|.+....|+..+.+.-+..
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 34555666666777777777776665543332 111 12334456667777777777666555
Q ss_pred HHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 005594 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 330 (689)
Q Consensus 251 al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 330 (689)
....-.+ +-.........+..++.+++-+ ..+.+.+..++...|+|.-....+.+.++.+
T Consensus 148 L~~~V~~--------------ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~ 207 (366)
T KOG2796|consen 148 LKTVVSK--------------ILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYY 207 (366)
T ss_pred HHHHHHH--------------HHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhC
Confidence 4322111 1111111223355666666654 3567788888999999999999999999987
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 005594 331 -PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403 (689)
Q Consensus 331 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 403 (689)
|..+.....+|.+..+.|+.+.|..++++.-+.. .....+..+.+.++.-.+++.+|...+.+.+..+|.++.
T Consensus 208 ~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~ 287 (366)
T KOG2796|consen 208 PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV 287 (366)
T ss_pred CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchh
Confidence 6678888899999999999999999998654332 223446778888888899999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 005594 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (689)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (689)
+..+.|.|+.-.|+..+|++..+.+++..|...
T Consensus 288 a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 288 ANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 999999999999999999999999999999754
No 208
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.52 E-value=7.6e-06 Score=65.67 Aligned_cols=100 Identities=20% Similarity=0.215 Sum_probs=85.9
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCC----HHHHHHHHH
Q 005594 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN----ACAHTHCGI 124 (689)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~ 124 (689)
..+-..|..+...|+.+.|++.|.+++...|.++.+|.+.+..+..+|+.++|++.+++++++.... -.++...|.
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGL 123 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 4455678888889999999999999999999999999999999999999999999999999886543 346788899
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC
Q 005594 125 LYKDEGRLVEAAESYHKALSADPS 148 (689)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~ 148 (689)
+|...|+.+.|...|+.+-++...
T Consensus 124 lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHhCchHHHHHhHHHHHHhCCH
Confidence 999999999999999988877654
No 209
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=2.1e-05 Score=70.14 Aligned_cols=107 Identities=15% Similarity=0.200 Sum_probs=74.3
Q ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-------H
Q 005594 338 NNLGVIYKDR-DNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA-------E 403 (689)
Q Consensus 338 ~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~ 403 (689)
..+|.+|... .++++|+.+|+++-+..... ...+...+..-...++|.+|+..|++.....-++. .
T Consensus 117 ~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kd 196 (288)
T KOG1586|consen 117 IEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKD 196 (288)
T ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHH
Confidence 3455555544 67777777777776553322 22555666666778888888888888877654442 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHH
Q 005594 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 444 (689)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 444 (689)
.++.-|.|+.-..+.-.+...+++..+++|...+.+--.++
T Consensus 197 yflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckfl 237 (288)
T KOG1586|consen 197 YFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFL 237 (288)
T ss_pred HHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHH
Confidence 45566778888888888999999999999998877655433
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=0.00019 Score=65.43 Aligned_cols=198 Identities=14% Similarity=0.097 Sum_probs=147.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhh
Q 005594 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273 (689)
Q Consensus 194 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~ 273 (689)
...-|.+....|+..+.+.-+...... -..+..........+..++.+++-+ ..+.+.+.
T Consensus 125 R~lhAe~~~~lgnpqesLdRl~~L~~~-------V~~ii~~~e~~~~~ESsv~lW~KRl-------------~~Vmy~~~ 184 (366)
T KOG2796|consen 125 RILHAELQQYLGNPQESLDRLHKLKTV-------VSKILANLEQGLAEESSIRLWRKRL-------------GRVMYSMA 184 (366)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHH-------HHHHHHHHHhccchhhHHHHHHHHH-------------HHHHHHHH
Confidence 344566677788888777766655321 1122233333334456666666543 22333344
Q ss_pred hhhhhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHH
Q 005594 274 TKVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN------PHCAEACNNLGVIYKD 346 (689)
Q Consensus 274 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~ 346 (689)
.++.-.+.+.-....+.+.++.+ |..+.....+|.+..+.|+.+.|..++++.-+.. .....+..+.+.++.-
T Consensus 185 ~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg 264 (366)
T KOG2796|consen 185 NCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLG 264 (366)
T ss_pred HHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheec
Confidence 44455778999999999999988 6678889999999999999999999999655432 2345677888899999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHH
Q 005594 347 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA---EAYNNLGVL 411 (689)
Q Consensus 347 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~ 411 (689)
.+++.+|...+.+.+..+|.++.+.++.|.|+.-.|+..+|++.++.+++..|... ...++|-.+
T Consensus 265 ~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tm 332 (366)
T KOG2796|consen 265 QNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTM 332 (366)
T ss_pred ccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999742 344444443
No 211
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.47 E-value=4.6e-06 Score=66.88 Aligned_cols=98 Identities=22% Similarity=0.336 Sum_probs=78.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHH
Q 005594 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----AEAYNNLGVLYR 413 (689)
Q Consensus 338 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~ 413 (689)
-..|..+...|+.+.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|++.+++++++.... ..++...|.+|.
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 3456667777888888888888888888888888888888888888888888888888875443 356778888888
Q ss_pred HcCCHHHHHHHHHHHHhcCCCC
Q 005594 414 DAGSISLAIDAYEQCLKIDPDS 435 (689)
Q Consensus 414 ~~g~~~~A~~~~~~al~~~p~~ 435 (689)
.+|+-+.|...|+.+-++-...
T Consensus 127 l~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HhCchHHHHHhHHHHHHhCCHH
Confidence 8888888888888888876543
No 212
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.43 E-value=2.9e-06 Score=84.59 Aligned_cols=80 Identities=30% Similarity=0.344 Sum_probs=67.9
Q ss_pred CCCCCcccccccccCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHH---HHhHHHHHHHhCCHHHHHHHHHHH
Q 005594 32 TSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEA---HIGKGICLQMQNMGRLAFDSFSEA 108 (689)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~a 108 (689)
+++++........+..+..++.+|..++..|+|++|+..|+++++++|++.++ ++++|.+|..+|++++|+..++++
T Consensus 59 ~~~~~~~~~~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 59 PSSSPAKDGSEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CCCCCCCCCccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33344444555667788999999999999999999999999999999998854 999999999999999999999999
Q ss_pred HHc
Q 005594 109 VKL 111 (689)
Q Consensus 109 l~~ 111 (689)
++.
T Consensus 139 Lel 141 (453)
T PLN03098 139 LRD 141 (453)
T ss_pred HHh
Confidence 987
No 213
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.43 E-value=9.3e-05 Score=63.70 Aligned_cols=150 Identities=17% Similarity=0.139 Sum_probs=98.3
Q ss_pred hCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhHHHHHHcCCh
Q 005594 95 QNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSA-DPSYKPAAECLAIVLTDLGTSLKLAGNT 173 (689)
Q Consensus 95 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~a~~~~~l~~~~~~~~~~ 173 (689)
.=+.+.......+.+...|.. .-.+.+|..+.+.|++.+|...|++++.- ...+.. ++..+++..+..+++
T Consensus 69 ~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a-------~lLglA~Aqfa~~~~ 140 (251)
T COG4700 69 KLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAA-------MLLGLAQAQFAIQEF 140 (251)
T ss_pred hcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHH-------HHHHHHHHHHhhccH
Confidence 334455555555555555543 23556777777777777777777777653 233332 255566666666777
Q ss_pred HHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594 174 QDGIQKYYEALKIDPH--YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 251 (689)
Q Consensus 174 ~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 251 (689)
..|...+++..+.+|. .++....+|..+..+|++.+|...|+.++...|+ +.+....+..+.++|+.++|...+...
T Consensus 141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 7777777777777664 4566677778888888888888888888877765 566666777777788777766655554
Q ss_pred Hh
Q 005594 252 LA 253 (689)
Q Consensus 252 l~ 253 (689)
.+
T Consensus 220 ~d 221 (251)
T COG4700 220 VD 221 (251)
T ss_pred HH
Confidence 43
No 214
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=8.3e-05 Score=66.50 Aligned_cols=141 Identities=14% Similarity=0.116 Sum_probs=100.3
Q ss_pred HHHhHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC------CHH
Q 005594 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSEL-MQYDTALGCYEKAALERPM------YAE 226 (689)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~------~~~ 226 (689)
|...+.+|.+ .+.++|+.++++++++..+. +..+..+|.+|..- .++++|+.+|+++-+.... .-.
T Consensus 77 YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANK 155 (288)
T KOG1586|consen 77 YVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANK 155 (288)
T ss_pred HHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHH
Confidence 4444444433 47777777777777664443 23345778888765 8899999999998765332 234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHH
Q 005594 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD 301 (689)
Q Consensus 227 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 301 (689)
.+...+..-...++|.+|+..|++.....-++....+..-..++.-|.++....+.-.+...+++..+.+|...+
T Consensus 156 C~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 156 CLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 566677778889999999999999988777776666666666677777777777887888888888888887543
No 215
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.40 E-value=0.00082 Score=69.86 Aligned_cols=210 Identities=13% Similarity=0.145 Sum_probs=107.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH------HHh----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 005594 194 YYNLGVVYSELMQYDTALGCYEKA------ALE----RPMY-AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (689)
Q Consensus 194 ~~~la~~~~~~g~~~~A~~~~~~a------l~~----~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 262 (689)
|-..|.+|.+..++++|+++|++. +++ .|.. ...-...|.-+...|+++.|+..|-++-.+
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~-------- 735 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCL-------- 735 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhH--------
Confidence 344455666666667777666542 222 1211 122233456666667777777666554211
Q ss_pred hhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 005594 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 342 (689)
Q Consensus 263 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 342 (689)
...-......+++.+|+.+++....... ....|-.++.-|...|+|+.|.++|.++- .......
T Consensus 736 -------~kaieaai~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~ 799 (1636)
T KOG3616|consen 736 -------IKAIEAAIGAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAID 799 (1636)
T ss_pred -------HHHHHHHhhhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHH
Confidence 1111111123455555555554332211 12234456666777777777777776542 2223344
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHH-------------HHHHHHH------HH----hC
Q 005594 343 IYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYTVQGKMDAA-------------AEMIEKA------IA----AN 398 (689)
Q Consensus 343 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A-------------~~~~~~a------l~----~~ 398 (689)
.|-+.|++++|.+.-++... |.. ...|...+.-+.+.|++.+| +..|++. +. ..
T Consensus 800 my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 800 MYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhC
Confidence 55566666666665554432 222 22333344444444444443 3333331 11 12
Q ss_pred CCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005594 399 PTY-AEAYNNLGVLYRDAGSISLAIDAYEQCL 429 (689)
Q Consensus 399 p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al 429 (689)
|+. .+.+..+|.-|...|+..+|...|-++-
T Consensus 878 ~d~l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 878 GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred hhhhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 322 4577788888999999998888877654
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.37 E-value=5.2e-07 Score=69.25 Aligned_cols=64 Identities=36% Similarity=0.540 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAA---N----PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (689)
Q Consensus 368 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (689)
..++.++|.+|..+|++++|+++|++++++ . |....++.++|.++..+|++++|++++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345556666666666666666666666544 1 112445666777777777777777777776654
No 217
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.37 E-value=3.6e-06 Score=72.54 Aligned_cols=102 Identities=21% Similarity=0.261 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005594 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL---DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 392 (689)
Q Consensus 316 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 392 (689)
|+.|.+.++.....+|.+++.+++-|.++..+.++ .++.+ .+++|+.-|+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~---------------------------miedAisK~e 59 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKK---------------------------MIEDAISKFE 59 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHH---------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHH---------------------------HHHHHHHHHH
Confidence 45566666666666666666666666665544322 11111 1334444555
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCChhhHhhHHH
Q 005594 393 KAIAANPTYAEAYNNLGVLYRDAG-----------SISLAIDAYEQCLKIDPDSRNAGQNRLL 444 (689)
Q Consensus 393 ~al~~~p~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~~~~ 444 (689)
+++.++|+..++++.+|.+|..++ .+++|..+|++|...+|++...+..+-+
T Consensus 60 eAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 60 EALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM 122 (186)
T ss_dssp HHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 555555655555555555555443 3678999999999999999877665433
No 218
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.32 E-value=0.0051 Score=63.48 Aligned_cols=344 Identities=9% Similarity=-0.057 Sum_probs=203.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHH
Q 005594 64 FVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY-KDEGRLVEAAESYHKA 142 (689)
Q Consensus 64 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~a 142 (689)
.+.+...|...|...|--...|...|..-.+.|..+.+.+.|++++.--|-+...|..+-... ...|+.+.-...|++|
T Consensus 61 ~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A 140 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERA 140 (577)
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 355666677777778877778888888888888888888888888888887777665544333 3456667777777777
Q ss_pred HhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHH
Q 005594 143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL------MQYDTALGCYEK 216 (689)
Q Consensus 143 l~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~ 216 (689)
......+... ...+-..-.....++++..-...|++.++..-.....++..-.-+.+. ...+++...-..
T Consensus 141 ~~~vG~dF~S----~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~ 216 (577)
T KOG1258|consen 141 KSYVGLDFLS----DPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSD 216 (577)
T ss_pred HHhcccchhc----cHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhh
Confidence 7765544322 112333334445566777777777777765333222222221111111 111221111111
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhh
Q 005594 217 AALERPMYAEAYCNMGVIYKNRGDLESAI-ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295 (689)
Q Consensus 217 al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 295 (689)
.... ......+...+-. ...+......+........+.......-.++.......+.+..++..+..
T Consensus 217 ~~~~------------~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~Ikr 284 (577)
T KOG1258|consen 217 VAER------------SKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKR 284 (577)
T ss_pred HHhh------------hhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccc
Confidence 1100 0000000000000 01111111111111111111112211222222233444444455544432
Q ss_pred -----CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCC
Q 005594 296 -----NWH---YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI-KPN 366 (689)
Q Consensus 296 -----~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~ 366 (689)
.|. ....|..........|+++.....|++++--.....+.|...+......|+.+-|...+.++.+. .|.
T Consensus 285 pYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~ 364 (577)
T KOG1258|consen 285 PYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKK 364 (577)
T ss_pred cccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCC
Confidence 122 23456677777788889999999999988888888888888888888888888888888888776 456
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 005594 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 423 (689)
Q Consensus 367 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 423 (689)
.+.+...-+..-...|++..|...+++..+..|+...+-........++|+.+.+..
T Consensus 365 ~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 365 TPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred CcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 677777777777888899999999999888888888888888888888888888874
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.30 E-value=1.3e-06 Score=66.99 Aligned_cols=74 Identities=28% Similarity=0.407 Sum_probs=56.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhh
Q 005594 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (689)
Q Consensus 113 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 186 (689)
|+-..++..+|.+|..+|++++|+.+|++++++.....+.....+.++.++|.++...|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34456889999999999999999999999998733333333445777888888888888888888888888764
No 220
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.00015 Score=65.39 Aligned_cols=197 Identities=22% Similarity=0.183 Sum_probs=104.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 005594 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY 310 (689)
Q Consensus 231 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 310 (689)
-+..|...+++++|...+.++.+-..++. .++.-+..+...+.+......+.++..+++++. ..|
T Consensus 37 AAvafRnAk~feKakdcLlkA~~~yEnnr-slfhAAKayEqaamLake~~klsEvvdl~eKAs--------------~lY 101 (308)
T KOG1585|consen 37 AAVAFRNAKKFEKAKDCLLKASKGYENNR-SLFHAAKAYEQAAMLAKELSKLSEVVDLYEKAS--------------ELY 101 (308)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--------------HHH
Confidence 34455555556666655555554433322 222333444444444444456666666666654 345
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCH
Q 005594 311 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKM 384 (689)
Q Consensus 311 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~ 384 (689)
.+.|..+-|-..++++-+. .+..+.++|+++|++++.+-.+. .+.+...+.++.+..++
T Consensus 102 ~E~GspdtAAmaleKAak~---------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKA---------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HHhCCcchHHHHHHHHHHH---------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 5555555555555554332 22345666666666666553222 23455566677777777
Q ss_pred HHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCChhhHhhHHHHhhhccCCCh
Q 005594 385 DAAAEMIEKAIAA------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI----DPDSRNAGQNRLLAMNYINEGHD 454 (689)
Q Consensus 385 ~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~~~~ 454 (689)
++|-..+.+-... .++....+.....+|....+|..|..+|+...++ .|++..+..+++- ....|+.
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~---ayd~gD~ 243 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT---AYDEGDI 243 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH---HhccCCH
Confidence 7776666554332 2333444555556666666788888888776654 3444444444432 2355666
Q ss_pred HHHHHH
Q 005594 455 DKLFEA 460 (689)
Q Consensus 455 ~~~~~~ 460 (689)
++..+.
T Consensus 244 E~~~kv 249 (308)
T KOG1585|consen 244 EEIKKV 249 (308)
T ss_pred HHHHHH
Confidence 554443
No 221
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.29 E-value=0.0011 Score=68.94 Aligned_cols=216 Identities=15% Similarity=0.106 Sum_probs=112.5
Q ss_pred HHhHHHHHHHhCCHHHHHHHHHHH------HHc----CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 005594 85 HIGKGICLQMQNMGRLAFDSFSEA------VKL----DPQNA-CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAA 153 (689)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~a------l~~----~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 153 (689)
|-.-|.++.+..++++|+++|++. +++ .|... ..-..-|.-+...|+++.|+..|-.+-.
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~--------- 734 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC--------- 734 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------
Confidence 334455555566666677666542 222 12211 1222335566677778877777755421
Q ss_pred HHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005594 154 ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233 (689)
Q Consensus 154 ~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 233 (689)
+...........+|.+|+..++....... ....|-.++.-|...|+++.|.++|.++ ........
T Consensus 735 ------~~kaieaai~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ae~lf~e~--------~~~~dai~ 799 (1636)
T KOG3616|consen 735 ------LIKAIEAAIGAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEIAEELFTEA--------DLFKDAID 799 (1636)
T ss_pred ------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHHHHHHHHhc--------chhHHHHH
Confidence 22222233344677777777665443322 2334556777788888888888888764 22233445
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHH-HHhhHHHHHHHh------hhhhhhcCCHHHHHHHHHHHH----------hhC
Q 005594 234 IYKNRGDLESAIACYERCLAVSPNFEI-AKNNMAIALTDL------GTKVKLEGDINQGVAYYKKAL----------YYN 296 (689)
Q Consensus 234 ~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~l------~~~~~~~~~~~~A~~~~~~al----------~~~ 296 (689)
+|-+.|++++|.++-+++.. |.... .+...+.-+-.. ..+|...|.+++|+..|++.- +..
T Consensus 800 my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 800 MYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhC
Confidence 67777888888777666532 22111 111111111111 112233444555555554421 112
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005594 297 WHY-ADAMYNLGVAYGEMLKFDMAIVFYELA 326 (689)
Q Consensus 297 ~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a 326 (689)
++. .+....+|.-+...|+...|...|-++
T Consensus 878 ~d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 878 GDHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred hhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 222 245666777777777777777766554
No 222
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=2.6e-06 Score=76.09 Aligned_cols=100 Identities=16% Similarity=0.126 Sum_probs=95.0
Q ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005594 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (689)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (689)
..+..+-+.|+.++....|..|+..|.+++.++|..+..+.+.+.|+++..+++.+.....++++++|+.....+.+|.+
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~ 87 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW 87 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence 45667888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhc
Q 005594 126 YKDEGRLVEAAESYHKALSA 145 (689)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~ 145 (689)
......+++|+..+.++..+
T Consensus 88 ~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 88 LLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHhhccccHHHHHHHHHHHH
Confidence 99999999999999999664
No 223
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.00028 Score=63.67 Aligned_cols=169 Identities=16% Similarity=0.132 Sum_probs=79.9
Q ss_pred HHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005594 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNM 231 (689)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 231 (689)
..+..-+..+...+++++|..++.++.+-..++ +.++-..+.+......+.++..+++++.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs------------- 98 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKAS------------- 98 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------------
Confidence 334445555566666777776666666443332 1222333333344444444444444442
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCC------HHHHHH
Q 005594 232 GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY------ADAMYN 305 (689)
Q Consensus 232 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~ 305 (689)
..|...|..+.|-..++++-+.-. ..++++|+++|++++...... .+.+..
T Consensus 99 -~lY~E~GspdtAAmaleKAak~le----------------------nv~Pd~AlqlYqralavve~~dr~~ma~el~gk 155 (308)
T KOG1585|consen 99 -ELYVECGSPDTAAMALEKAAKALE----------------------NVKPDDALQLYQRALAVVEEDDRDQMAFELYGK 155 (308)
T ss_pred -HHHHHhCCcchHHHHHHHHHHHhh----------------------cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 334445555555554444433211 235666666666665543222 123444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005594 306 LGVAYGEMLKFDMAIVFYELAFHF------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 362 (689)
Q Consensus 306 la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 362 (689)
.++++....++++|-..+.+-... .++....+.....+++...+|..|..+++...+
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~q 218 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQ 218 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhc
Confidence 555566666666655555443221 122223333333444444455555555555443
No 224
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.24 E-value=0.0018 Score=68.14 Aligned_cols=120 Identities=16% Similarity=0.108 Sum_probs=76.6
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHH
Q 005594 314 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAE 389 (689)
Q Consensus 314 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~ 389 (689)
...+.|.+.++...+..|+..-.++..|.++...|+.++|++.|++++.....- .-.++.+++++..+.+|++|.+
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 345566666666666666666666666666666666666666666665432222 2256677777777777777777
Q ss_pred HHHHHHHhCCCc-HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhcCC
Q 005594 390 MIEKAIAANPTY-AEAYNNLGVLYRDAGSI-------SLAIDAYEQCLKIDP 433 (689)
Q Consensus 390 ~~~~al~~~p~~-~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~p 433 (689)
++.+..+.+.-. .-..+..|.++...|+. ++|.++|+++-.+..
T Consensus 327 ~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 327 YFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 777777754432 33445567777777777 777777777765544
No 225
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.23 E-value=0.01 Score=61.38 Aligned_cols=386 Identities=11% Similarity=-0.011 Sum_probs=236.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHH-HHhCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHH
Q 005594 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICL-QMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILY 126 (689)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~ 126 (689)
|...|..-.+.|..+.+.+.|++.+.--|-+.+.|..+-... -..|+.+.-...|++|......+ ...|-..-...
T Consensus 82 W~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~e 161 (577)
T KOG1258|consen 82 WKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFE 161 (577)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHH
Confidence 344677777889999999999999999998888777654443 35577888888899998876543 45677777777
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 005594 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (689)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 206 (689)
..++++..-...|++.++.--.... ..+...-.. .. .+...-+...+++.++...... . ......+.
T Consensus 162 n~qks~k~v~~iyeRileiP~~~~~------~~f~~f~~~-l~-~~~~~~l~~~d~~~~l~~~~~~---~--~~~~~~~~ 228 (577)
T KOG1258|consen 162 NGQKSWKRVANIYERILEIPLHQLN------RHFDRFKQL-LN-QNEEKILLSIDELIQLRSDVAE---R--SKITHSQE 228 (577)
T ss_pred hccccHHHHHHHHHHHHhhhhhHhH------HHHHHHHHH-Hh-cCChhhhcCHHHHHHHhhhHHh---h--hhcccccC
Confidence 7888999999999998875322111 111111110 01 1111111111222111110000 0 00000001
Q ss_pred HHHHHH-HHHHHHHhCCCCHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcHHHHhhHHHHHHHhh
Q 005594 207 YDTALG-CYEKAALERPMYAEAY-------CNMGVIYKNRGDLESAIACYERCLAV-----SPNFEIAKNNMAIALTDLG 273 (689)
Q Consensus 207 ~~~A~~-~~~~al~~~p~~~~~~-------~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~l~ 273 (689)
..+-.+ .........+...... ...=.++.......+.+..++..++. .|-+..-. ..+....
T Consensus 229 ~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql----~nw~~yL 304 (577)
T KOG1258|consen 229 PLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQL----KNWRYYL 304 (577)
T ss_pred hhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHH----HHHHHHh
Confidence 111111 1111111111111111 11112333334445555556655543 22221111 1122223
Q ss_pred hhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHH
Q 005594 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-NPHCAEACNNLGVIYKDRDNLDK 352 (689)
Q Consensus 274 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~ 352 (689)
......|+++...-.+++++--.....+.|...+......|+.+-|...+.++.++ .+..+.+...-+.+....|++..
T Consensus 305 df~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~ 384 (577)
T KOG1258|consen 305 DFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDD 384 (577)
T ss_pred hhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHH
Confidence 33445789999999999999888888899999999999999999999999998887 46778888888889999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHhC--CCc-HHHHHHHHHH-HHHcCCHHHHHHHH
Q 005594 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE---MIEKAIAAN--PTY-AEAYNNLGVL-YRDAGSISLAIDAY 425 (689)
Q Consensus 353 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~---~~~~al~~~--p~~-~~~~~~la~~-~~~~g~~~~A~~~~ 425 (689)
|...+++..+..|+..++-........++|+.+.+.. ++.....-. +.- ...+...++. +.-.++.+.|...+
T Consensus 385 A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l 464 (577)
T KOG1258|consen 385 AKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIIL 464 (577)
T ss_pred HHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999998889998888888888888999988884 332222211 111 2334444443 44578899999999
Q ss_pred HHHHhcCCCChhhHhhHHHHhhhccCCC
Q 005594 426 EQCLKIDPDSRNAGQNRLLAMNYINEGH 453 (689)
Q Consensus 426 ~~al~~~p~~~~~~~~~~~~~~~~~~~~ 453 (689)
.++++..|++...+....-...+...+.
T Consensus 465 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 492 (577)
T KOG1258|consen 465 LEANDILPDCKVLYLELIRFELIQPSGR 492 (577)
T ss_pred HHhhhcCCccHHHHHHHHHHHHhCCcch
Confidence 9999999999877766544333333333
No 226
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.22 E-value=0.0023 Score=67.36 Aligned_cols=150 Identities=18% Similarity=0.066 Sum_probs=111.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHH------HHHHHHHHH----HcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 005594 304 YNLGVAYGEMLKFDMAIVFYELAFHFNPHC-AEA------CNNLGVIYK----DRDNLDKAVECYQMALSIKPNFSQSLN 372 (689)
Q Consensus 304 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~------~~~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~ 372 (689)
..+..+..-.|+-+.+++.+.++.+...-. +.+ |+.....+. .....+.|.+.++...+..|+..-.+.
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~ 271 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLF 271 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 334444455677777777777776632111 111 111111111 345789999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHhhh
Q 005594 373 NLGVVYTVQGKMDAAAEMIEKAIAANPTY----AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNY 448 (689)
Q Consensus 373 ~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 448 (689)
..|+++...|+.++|++.|++++....+. .-.++.++.++..+++|++|.++|.+..+.+.- ..+...++.+.++
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~ 350 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHHHH
Confidence 99999999999999999999988543332 346789999999999999999999999996655 5677777888888
Q ss_pred ccCCCh
Q 005594 449 INEGHD 454 (689)
Q Consensus 449 ~~~~~~ 454 (689)
...++.
T Consensus 351 ~~l~~~ 356 (468)
T PF10300_consen 351 LMLGRE 356 (468)
T ss_pred Hhhccc
Confidence 877766
No 227
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.21 E-value=0.00017 Score=73.03 Aligned_cols=108 Identities=19% Similarity=0.184 Sum_probs=95.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 005594 306 LGVAYGEMLKFDMAIVFYELAFHFNPHCA-EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 384 (689)
Q Consensus 306 la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 384 (689)
.|..+...|+...|+.++..++...|... ....+++.++.+.|....|-..+.+++.+....+-.++.+|.++..+.+.
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i 692 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNI 692 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhh
Confidence 34445668999999999999999988654 45789999999999999999999999999988899999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005594 385 DAAAEMIEKAIAANPTYAEAYNNLGVLYR 413 (689)
Q Consensus 385 ~~A~~~~~~al~~~p~~~~~~~~la~~~~ 413 (689)
+.|++.++++++++|+++.....|-.+-.
T Consensus 693 ~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 693 SGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999999999988777766544
No 228
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.16 E-value=2.2e-05 Score=67.75 Aligned_cols=113 Identities=26% Similarity=0.270 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhh---hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHH
Q 005594 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK---LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM 318 (689)
Q Consensus 242 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~ 318 (689)
+.|.+.++.....+|.+.+.+.+-+.++..++.... ...-+++|+.-|++++.++|+..++++.+|.++...+...
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~- 86 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT- 86 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc-
Confidence 444444444455555555555544555444443321 2234677888888889999999999999998887665311
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005594 319 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 377 (689)
Q Consensus 319 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 377 (689)
|+.. .....|++|..+|++|...+|++......|..+
T Consensus 87 ------------~d~~----------~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 87 ------------PDTA----------EAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp --------------HH----------HHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred ------------CChH----------HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 0000 001124566666777777777666555554443
No 229
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.12 E-value=0.00079 Score=67.62 Aligned_cols=189 Identities=16% Similarity=0.095 Sum_probs=107.7
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q 005594 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLV 133 (689)
Q Consensus 54 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 133 (689)
..+..-+..+.++-++.-+++++++|+.+.+|..++.-. .....+|.++|+++++...... .........|..-
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~l----g~s~~~~~~g~~~ 247 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASL----GKSQFLQHHGHFW 247 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhh----chhhhhhcccchh
Confidence 334445667777777777777777777777777766532 2335667777777665432111 0000011111110
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHH
Q 005594 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH--YAPAYYNLGVVYSELMQYDTAL 211 (689)
Q Consensus 134 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~ 211 (689)
+ .......+. +..+-..++.+..+.|+.++|++.++..++..|. +..++.+|..++..++.|.++.
T Consensus 248 e-------~~~~Rdt~~-----~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q 315 (539)
T PF04184_consen 248 E-------AWHRRDTNV-----LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQ 315 (539)
T ss_pred h-------hhhccccch-----hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHH
Confidence 0 110001111 1223456777888888888888888888877664 4567888888888888888888
Q ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHc-CC---------------HHHHHHHHHHHHhcCCCcHH
Q 005594 212 GCYEKAALE-RPMYAEAYCNMGVIYKNR-GD---------------LESAIACYERCLAVSPNFEI 260 (689)
Q Consensus 212 ~~~~~al~~-~p~~~~~~~~la~~~~~~-g~---------------~~~A~~~~~~al~~~~~~~~ 260 (689)
..+.+--++ -|+.+...+..+.+..+. ++ -..|++.+.++++.+|.-+.
T Consensus 316 ~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 316 ALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 888775433 245555555554443221 11 12355667777777776543
No 230
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=98.11 E-value=0.0073 Score=59.14 Aligned_cols=131 Identities=21% Similarity=0.087 Sum_probs=103.3
Q ss_pred HHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhHHHHHHcC-ChHHHHHHHHHHHhh----CC---C-------
Q 005594 126 YKDEGRLVEAAESYHKALSAD-PSYKPAAECLAIVLTDLGTSLKLAG-NTQDGIQKYYEALKI----DP---H------- 189 (689)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~l~~~~~~~~-~~~~A~~~~~~al~~----~~---~------- 189 (689)
...+|+++.|..++.|+-... ..++.....++.++++.|......+ +++.|...++++.+. .. .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 356899999999999997766 6667777889999999999999999 999999999999887 21 1
Q ss_pred CHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005594 190 YAPAYYNLGVVYSELMQYD---TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (689)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 256 (689)
...++..++.+|...+.++ +|...++.+-...|+.+..+...-.+..+.++.+++.+.+.+++...+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 1346677888888877755 455566666666788788876666677778899999999999887654
No 231
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.08 E-value=0.031 Score=61.56 Aligned_cols=365 Identities=14% Similarity=0.063 Sum_probs=213.1
Q ss_pred HHHHHHHHHHHHhCCC----CHHHHHhHHHHHH-HhCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCCHH
Q 005594 65 VDALALYEIVLEKDSG----NVEAHIGKGICLQ-MQNMGRLAFDSFSEAVKLDPQN------ACAHTHCGILYKDEGRLV 133 (689)
Q Consensus 65 ~~A~~~~~~~l~~~p~----~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~ 133 (689)
..|+.+++-+++..+- .+.+.+.+|.+++ ...++++|..++++++.+...+ ..+...++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 4567777777743221 3467888999987 7899999999999998776432 234556788888888777
Q ss_pred HHHHHHHHHHhcCCCCHHH-HHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhC--CCCHHH----HHHHHHHHHHcCC
Q 005594 134 EAAESYHKALSADPSYKPA-AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID--PHYAPA----YYNLGVVYSELMQ 206 (689)
Q Consensus 134 ~A~~~~~~al~~~p~~~~~-~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~----~~~la~~~~~~g~ 206 (689)
|...+++.++........ +...-+ +.. .......+++..|++.++...... ..++.+ ....+.+....+.
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~fr-ll~-~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~ 194 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFR-LLK-IQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS 194 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHH-HHH-HHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 999999998876552221 111111 111 122222379999999999988764 344332 2334566677787
Q ss_pred HHHHHHHHHHHHHhCC----------CCHHHHHHHHH--HHHHcCCHHHHHHHHHHH---HhcCCCcH------------
Q 005594 207 YDTALGCYEKAALERP----------MYAEAYCNMGV--IYKNRGDLESAIACYERC---LAVSPNFE------------ 259 (689)
Q Consensus 207 ~~~A~~~~~~al~~~p----------~~~~~~~~la~--~~~~~g~~~~A~~~~~~a---l~~~~~~~------------ 259 (689)
.+++++.++++..... ....++..+-. ++...|++..+...+++. ++...+..
T Consensus 195 ~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~ 274 (608)
T PF10345_consen 195 PDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIP 274 (608)
T ss_pred chhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEE
Confidence 8888888888744211 12334444433 345667766666554443 22211110
Q ss_pred --------------------HHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCC-------C-------------
Q 005594 260 --------------------IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH-------Y------------- 299 (689)
Q Consensus 260 --------------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-------~------------- 299 (689)
......+.+|.--|......+..++|.++++++++.-.+ .
T Consensus 275 l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~ 354 (608)
T PF10345_consen 275 LNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQ 354 (608)
T ss_pred eecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHH
Confidence 001112333333344455556666777777777643111 0
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CC------CHHHHHHHHHHHHHcCCHHHHHHHHH------
Q 005594 300 ------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFN---PH------CAEACNNLGVIYKDRDNLDKAVECYQ------ 358 (689)
Q Consensus 300 ------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~------~~~~~~~la~~~~~~g~~~~A~~~~~------ 358 (689)
.......+....-.+++.+|....+.+.... |. .+..++..|..+...|+.+.|+..|.
T Consensus 355 ~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~ 434 (608)
T PF10345_consen 355 WLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLL 434 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhh
Confidence 0134556777788899999998888777652 22 36778889999999999999999998
Q ss_pred --HHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCC---CcH-----HHHHHHHHHHH--HcCCHHHHH
Q 005594 359 --MALSIKPNFS---QSLNNLGVVYTVQGKMDAAAEMIEKAIA-ANP---TYA-----EAYNNLGVLYR--DAGSISLAI 422 (689)
Q Consensus 359 --~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p---~~~-----~~~~~la~~~~--~~g~~~~A~ 422 (689)
.+....+... -+..++..++...+........+.+.++ ++| +.. .++..+-.++. ..-...++.
T Consensus 435 ~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k 514 (608)
T PF10345_consen 435 CEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAK 514 (608)
T ss_pred hhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHH
Confidence 3333333332 2556677777765553332212222322 222 111 12222222221 222335788
Q ss_pred HHHHHHHhcC
Q 005594 423 DAYEQCLKID 432 (689)
Q Consensus 423 ~~~~~al~~~ 432 (689)
..+.++++..
T Consensus 515 ~~l~~~L~~~ 524 (608)
T PF10345_consen 515 RHLQEALKMA 524 (608)
T ss_pred HHHHHHHHHH
Confidence 8888877765
No 232
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.08 E-value=0.031 Score=61.52 Aligned_cols=409 Identities=15% Similarity=0.055 Sum_probs=240.8
Q ss_pred CchhhHHHHHHHHH-hCCCHHHHHHHHHHHHHhCCC--CH----HHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCC---C
Q 005594 46 FEGKDALSYANILR-SRNKFVDALALYEIVLEKDSG--NV----EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---N 115 (689)
Q Consensus 46 ~~~~~~~~~a~~~~-~~g~~~~A~~~~~~~l~~~p~--~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~ 115 (689)
.++...+++|.+++ ...+++.|...+++++..... -. .+.+.++.++.+.+... |+..+++.++.... .
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~ 135 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHS 135 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCch
Confidence 56788999999998 678999999999999877533 22 34556788888887766 99999999886443 2
Q ss_pred HH-HHHHH--HHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCC--
Q 005594 116 AC-AHTHC--GILYKDEGRLVEAAESYHKALSADP--SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP-- 188 (689)
Q Consensus 116 ~~-~~~~l--a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-- 188 (689)
.. ..+.+ ...+...+++..|++.++....... .+... ...+....+.+....+..+++++.++++.....
T Consensus 136 ~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~---~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~ 212 (608)
T PF10345_consen 136 AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV---FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSL 212 (608)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH---HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhc
Confidence 21 12222 3333334799999999999988753 33332 223344445666777888888888887744311
Q ss_pred ----C----CHHHHHHHHH--HHHHcCCHHHHHHHHHHHH---Hh---CC---C---C----------------------
Q 005594 189 ----H----YAPAYYNLGV--VYSELMQYDTALGCYEKAA---LE---RP---M---Y---------------------- 224 (689)
Q Consensus 189 ----~----~~~~~~~la~--~~~~~g~~~~A~~~~~~al---~~---~p---~---~---------------------- 224 (689)
+ ...++..+-. ++...|+++.+...+++.- +. .+ . +
T Consensus 213 q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~ 292 (608)
T PF10345_consen 213 QLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFS 292 (608)
T ss_pred ccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEe
Confidence 1 2334443333 4556777777766655542 11 11 0 0
Q ss_pred --------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH-----------------HHH--hhHHHHHHHhhhhhh
Q 005594 225 --------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE-----------------IAK--NNMAIALTDLGTKVK 277 (689)
Q Consensus 225 --------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----------------~~~--~~~~~~~~~l~~~~~ 277 (689)
.-++..-|......+..++|.++++++++.-.+.. ..+ .....++..++....
T Consensus 293 wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~ 372 (608)
T PF10345_consen 293 WLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNF 372 (608)
T ss_pred ecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 11233345566677777788888888876422111 011 112233444555666
Q ss_pred hcCCHHHHHHHHHHHHhhC---CC------CHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhhCCCC---HHHH
Q 005594 278 LEGDINQGVAYYKKALYYN---WH------YADAMYNLGVAYGEMLKFDMAIVFYE--------LAFHFNPHC---AEAC 337 (689)
Q Consensus 278 ~~~~~~~A~~~~~~al~~~---~~------~~~~~~~la~~~~~~g~~~~A~~~~~--------~al~~~p~~---~~~~ 337 (689)
..+++.++....+.+.... |. .+..++..|..+...|+.+.|...|. .+....+.+ .-+.
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~ 452 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA 452 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence 7889999988888777553 22 36678999999999999999999998 333333333 2344
Q ss_pred HHHHHHHHHcCCHHH----HHHHHHHHHhcCCCCHH-----HHHHHHHHHH--HcCCHHHHHHHHHHHHHhC-C--Cc--
Q 005594 338 NNLGVIYKDRDNLDK----AVECYQMALSIKPNFSQ-----SLNNLGVVYT--VQGKMDAAAEMIEKAIAAN-P--TY-- 401 (689)
Q Consensus 338 ~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~-----~~~~la~~~~--~~g~~~~A~~~~~~al~~~-p--~~-- 401 (689)
.++..++...+.-.. +.+.+++.-....+.+. ++..+-.++. ..-...++...+.++++.. . ++
T Consensus 453 LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~ 532 (608)
T PF10345_consen 453 LNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQ 532 (608)
T ss_pred HHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccch
Confidence 566666665554333 33444332222112222 2222222221 1223447777777776654 1 11
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhhHhhH----HHHhhhccCCChHHHHH
Q 005594 402 --AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS---RNAGQNR----LLAMNYINEGHDDKLFE 459 (689)
Q Consensus 402 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~----~~~~~~~~~~~~~~~~~ 459 (689)
.-++..++..+. .|+..+......++..+.... ....+.. ++...+...|+.+++-.
T Consensus 533 l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~ 598 (608)
T PF10345_consen 533 LLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEE 598 (608)
T ss_pred HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 234555666666 788888777777777654444 4333321 22233455666655443
No 233
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=98.06 E-value=0.0051 Score=63.11 Aligned_cols=295 Identities=15% Similarity=0.072 Sum_probs=152.8
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCC--------CCHHHHHHHHHH
Q 005594 55 ANILRSRNKFVDALALYEIVLEKDS-GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP--------QNACAHTHCGIL 125 (689)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~ 125 (689)
+++..+.|+++. +.+.+...+ +..+..+..+......++++++....+++...-- ......+..-..
T Consensus 5 ~eaaWrl~~Wd~----l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~ 80 (352)
T PF02259_consen 5 AEAAWRLGDWDL----LEEYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVK 80 (352)
T ss_pred HHHHHhcCChhh----HHHHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 566778888888 333333322 2346677777777788999998888888765421 111111111111
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChH--HHHHHHHHHHhh----CCCCHHHHHHHHH
Q 005594 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ--DGIQKYYEALKI----DPHYAPAYYNLGV 199 (689)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~--~A~~~~~~al~~----~~~~~~~~~~la~ 199 (689)
+....+.+++..+....... ......+...|...-.. ...+++ +-+-.++..+-. .......+...+.
T Consensus 81 lq~L~Elee~~~~~~~~~~~----~~~~~~l~~~W~~Rl~~--~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~ 154 (352)
T PF02259_consen 81 LQQLVELEEIIELKSNLSQN----PQDLKSLLKRWRSRLPN--MQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAK 154 (352)
T ss_pred HhHHHHHHHHHHHHHhhccc----HHHHHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 11222333333333211100 11111111112111100 011111 111111222211 3455778899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhh
Q 005594 200 VYSELMQYDTALGCYEKAALERP----MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275 (689)
Q Consensus 200 ~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~ 275 (689)
+..+.|+++.|...+.++....+ ..+.+.+..+.++...|+..+|+..++..+.............. ....+..
T Consensus 155 ~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~--~~~~~~~ 232 (352)
T PF02259_consen 155 LARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA--ELKSGLL 232 (352)
T ss_pred HHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH--HHhhccc
Confidence 99999999999999999887642 25678888899999999999999999988872211100000000 0000000
Q ss_pred hhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-
Q 005594 276 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM------LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD- 348 (689)
Q Consensus 276 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g- 348 (689)
+.............. ......++..+|...... +..++++..|.++.+.+|....+|..+|..+...-
T Consensus 233 ~~~~~~~~~~~~~~~-----~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~ 307 (352)
T PF02259_consen 233 ESLEVISSTNLDKES-----KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLE 307 (352)
T ss_pred cccccccccchhhhh-----HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHH
Confidence 000000000000000 000124455555555555 66777777777777777777667766666554321
Q ss_pred ----------------CHHHHHHHHHHHHhcCCC
Q 005594 349 ----------------NLDKAVECYQMALSIKPN 366 (689)
Q Consensus 349 ----------------~~~~A~~~~~~al~~~p~ 366 (689)
-...|+..|-+++...+.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 308 SDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred hhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 124588899999998877
No 234
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=0.00034 Score=66.07 Aligned_cols=158 Identities=13% Similarity=-0.005 Sum_probs=109.9
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCC---HHHHHHHHHHHHHcCCHHHHH
Q 005594 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-NPHC---AEACNNLGVIYKDRDNLDKAV 354 (689)
Q Consensus 279 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~g~~~~A~ 354 (689)
.|+..+|...+++.++..|.+.-++..--.+++.+|+.+.-...+++.+.. +++. ..+.-.++..+...|-|++|.
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 567777777777777777777777777777777777777777777777766 5554 444556666777788888888
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHH-
Q 005594 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----AEAYNNLGVLYRDAGSISLAIDAYEQCL- 429 (689)
Q Consensus 355 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al- 429 (689)
+.-++++++++.+..+...++.++...|+++++.+...+.-..-... ..-|...+.++...+.++.|++.|.+-+
T Consensus 196 k~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei~ 275 (491)
T KOG2610|consen 196 KQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREIW 275 (491)
T ss_pred HHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHHH
Confidence 88888888888888888888888888888888887776643322111 1124456677777788888888886543
Q ss_pred -hcCCCCh
Q 005594 430 -KIDPDSR 436 (689)
Q Consensus 430 -~~~p~~~ 436 (689)
++..++.
T Consensus 276 k~l~k~Da 283 (491)
T KOG2610|consen 276 KRLEKDDA 283 (491)
T ss_pred HHhhccch
Confidence 3444444
No 235
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.06 E-value=0.00011 Score=71.88 Aligned_cols=135 Identities=9% Similarity=0.041 Sum_probs=105.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005594 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD-RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380 (689)
Q Consensus 302 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 380 (689)
+|..+.....+.+..+.|..+|.++.+..+....+|...|.+... .++.+.|...|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 455666666677778888888888886666678888888888666 4555569999999999888888888888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 005594 381 QGKMDAAAEMIEKAIAANPTYA---EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (689)
Q Consensus 381 ~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (689)
.|+.+.|...|++++..-+... .+|......-...|+.+......+++.+..|++.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999888766544 5788888888899999999999999999988843
No 236
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=9.3e-05 Score=66.60 Aligned_cols=74 Identities=14% Similarity=0.082 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhh
Q 005594 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (689)
Q Consensus 368 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (689)
...+.+++.|+...|++-++++.....+...|.+..+++..|.+....=+.++|...|.++|+++|.-..+...
T Consensus 230 tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsr 303 (329)
T KOG0545|consen 230 TPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSR 303 (329)
T ss_pred hHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHH
Confidence 34788999999999999999999999999999999999999999999999999999999999999987766554
No 237
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=98.03 E-value=0.0066 Score=62.24 Aligned_cols=260 Identities=12% Similarity=0.079 Sum_probs=149.3
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHH
Q 005594 165 TSLKLAGNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALER--------PMYAEAYCNMGVIY 235 (689)
Q Consensus 165 ~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~ 235 (689)
.+....|+++.-. +.+...+ +..+..+..+......++++++..+++++...- +......+..-.-+
T Consensus 6 eaaWrl~~Wd~l~----~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~l 81 (352)
T PF02259_consen 6 EAAWRLGDWDLLE----EYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKL 81 (352)
T ss_pred HHHHhcCChhhHH----HHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 4455678888733 3332222 233566666666778899999999888886531 11111111111222
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHH--HHHHHHHHHHhh----CCCCHHHHHHHHHH
Q 005594 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN--QGVAYYKKALYY----NWHYADAMYNLGVA 309 (689)
Q Consensus 236 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~al~~----~~~~~~~~~~la~~ 309 (689)
....+.+++..+....... ......+...+...-. ....+++ +-+-.++..+-. .......+...+.+
T Consensus 82 q~L~Elee~~~~~~~~~~~----~~~~~~l~~~W~~Rl~--~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~ 155 (352)
T PF02259_consen 82 QQLVELEEIIELKSNLSQN----PQDLKSLLKRWRSRLP--NMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKL 155 (352)
T ss_pred hHHHHHHHHHHHHHhhccc----HHHHHHHHHHHHHHHH--HhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 2233334444433221100 1111111111111000 0011111 111112222211 33456788899999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CC-C-----------------
Q 005594 310 YGEMLKFDMAIVFYELAFHFNP----HCAEACNNLGVIYKDRDNLDKAVECYQMALSI-KP-N----------------- 366 (689)
Q Consensus 310 ~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p-~----------------- 366 (689)
..+.|+++.|...+.++....+ ..+.+....+.++...|+..+|+..++..++. .. .
T Consensus 156 aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (352)
T PF02259_consen 156 ARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESL 235 (352)
T ss_pred HHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccccc
Confidence 9999999999999999887652 24678888899999999999999988888771 10 0
Q ss_pred ---------------CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH-------
Q 005594 367 ---------------FSQSLNNLGVVYTVQ------GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI------- 418 (689)
Q Consensus 367 ---------------~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~------- 418 (689)
...++..+|...... +..++++..|+++++.+|+...+|+.+|..+...=+.
T Consensus 236 ~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~ 315 (352)
T PF02259_consen 236 EVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEE 315 (352)
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 023555666666666 7788888899999999888888888888776553211
Q ss_pred ----------HHHHHHHHHHHhcCCC
Q 005594 419 ----------SLAIDAYEQCLKIDPD 434 (689)
Q Consensus 419 ----------~~A~~~~~~al~~~p~ 434 (689)
..|+..|-+++.+.++
T Consensus 316 ~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 316 SSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 2366666666666665
No 238
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=1.4e-05 Score=71.58 Aligned_cols=90 Identities=22% Similarity=0.226 Sum_probs=45.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 005594 307 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 386 (689)
Q Consensus 307 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 386 (689)
|..++...+|+.|+..|.+++.++|..+..+.+.+.++++.++++.+.....+++++.|+....++.+|..+.....+++
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 33444444455555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHH
Q 005594 387 AAEMIEKAIA 396 (689)
Q Consensus 387 A~~~~~~al~ 396 (689)
|+..++++..
T Consensus 97 aI~~Lqra~s 106 (284)
T KOG4642|consen 97 AIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHH
Confidence 5555555533
No 239
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.02 E-value=0.0064 Score=65.71 Aligned_cols=82 Identities=24% Similarity=0.302 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---CCHHHH
Q 005594 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ----GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA---GSISLA 421 (689)
Q Consensus 349 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A 421 (689)
+...+...+.++.. ..+..+...+|.+|..- .+++.|...|.++.... +...+++|.++..- .....|
T Consensus 454 ~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a 528 (552)
T KOG1550|consen 454 TLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLA 528 (552)
T ss_pred chhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHH
Confidence 44555555555543 35567777777777653 35888888888887766 77888888887651 126788
Q ss_pred HHHHHHHHhcCCCC
Q 005594 422 IDAYEQCLKIDPDS 435 (689)
Q Consensus 422 ~~~~~~al~~~p~~ 435 (689)
..+|.++.+.+.+.
T Consensus 529 ~~~~~~~~~~~~~~ 542 (552)
T KOG1550|consen 529 KRYYDQASEEDSRA 542 (552)
T ss_pred HHHHHHHHhcCchh
Confidence 88888887766553
No 240
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=0.0001 Score=66.27 Aligned_cols=108 Identities=18% Similarity=0.092 Sum_probs=95.3
Q ss_pred cCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCCC----------HHHHHhHHHHHHHhCCHHHHHHHHH
Q 005594 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEK--------DSGN----------VEAHIGKGICLQMQNMGRLAFDSFS 106 (689)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~ 106 (689)
-.....+-..|+.++..|+|.+|...|+.++.. .|.. ...+.+++.|++..|+|-++++...
T Consensus 175 mkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~s 254 (329)
T KOG0545|consen 175 MKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCS 254 (329)
T ss_pred hhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHH
Confidence 345667888999999999999999999988642 4444 3477889999999999999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 005594 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (689)
Q Consensus 107 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 152 (689)
.++..+|.|..+++..|......-+.++|...|.++++++|.-...
T Consensus 255 eiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 255 EILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 9999999999999999999999999999999999999999985543
No 241
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.01 E-value=0.0007 Score=68.00 Aligned_cols=105 Identities=16% Similarity=0.122 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHH
Q 005594 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA-NPTYAEAYNNLGVLY 412 (689)
Q Consensus 336 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~ 412 (689)
+...+|.+..+.|+.++|++.++..++..|. +..+..+|..++..++.+.++...+.+.-+. -|..+...+.-+.+.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 4455677777777777777777777766554 3446677777777777777777776665333 244555555444433
Q ss_pred HH-------------cC---CHHHHHHHHHHHHhcCCCChhhHh
Q 005594 413 RD-------------AG---SISLAIDAYEQCLKIDPDSRNAGQ 440 (689)
Q Consensus 413 ~~-------------~g---~~~~A~~~~~~al~~~p~~~~~~~ 440 (689)
.+ .| --..|.+.+.+|++.||.-+....
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 22 11 123478999999999999876543
No 242
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.025 Score=61.71 Aligned_cols=234 Identities=14% Similarity=0.063 Sum_probs=140.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005594 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH 140 (689)
Q Consensus 61 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 140 (689)
-++.+.|.+..+++ +.+..|..+|.+.+..|...+|++.|-++ +++..+........+.|.|++-+.++.
T Consensus 1088 i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~ 1157 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLL 1157 (1666)
T ss_pred hhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 35666666666554 34567777777777777777777777554 456666666777777777777777766
Q ss_pred HHHhcCCCC-HHH--HHHHHHH-----------------HHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 005594 141 KALSADPSY-KPA--AECLAIV-----------------LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVV 200 (689)
Q Consensus 141 ~al~~~p~~-~~~--~~~~a~~-----------------~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 200 (689)
-+-+...+. .+. ...++.. ....|.-++..+.|+.|.-+|.. ..-|..++..
T Consensus 1158 MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~T 1229 (1666)
T KOG0985|consen 1158 MARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLAST 1229 (1666)
T ss_pred HHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHH
Confidence 554432211 111 1111100 22355666666777777666643 3456778888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC-------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005594 201 YSELMQYDTALGCYEKAALERP-------------------------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (689)
Q Consensus 201 ~~~~g~~~~A~~~~~~al~~~p-------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 255 (689)
+..+|+|..|....+++-.... -+++-+-.+...|...|-+++-+..++.++.+.
T Consensus 1230 LV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE 1309 (1666)
T KOG0985|consen 1230 LVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE 1309 (1666)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh
Confidence 8889999999888888733210 023445567778888999999999999998877
Q ss_pred CCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHhcCCHHHHH
Q 005594 256 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--------WHYADAMYNLGVAYGEMLKFDMAI 320 (689)
Q Consensus 256 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~g~~~~A~ 320 (689)
..+......++..|... ++++-.+.++-....- -+....|..+.-+|.+-..|+.|.
T Consensus 1310 RAHMgmfTELaiLYsky--------kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1310 RAHMGMFTELAILYSKY--------KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 66555555555554432 3444443333221110 012345666666666666666553
No 243
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=0.0054 Score=58.23 Aligned_cols=166 Identities=14% Similarity=0.046 Sum_probs=134.4
Q ss_pred HHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHH
Q 005594 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSA-DPSYKPAAECLAIVLT 161 (689)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~a~~~~ 161 (689)
+-....+.+....|+..+|-..+++.++..|.+..++..--..++.+|+...-...+++++.. +++.+-.. -+.-
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~s----Yv~G 179 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYS----YVHG 179 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHH----HHHH
Confidence 344455666778899999999999999999999999888888999999999999999999877 66654321 1233
Q ss_pred HhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHH
Q 005594 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY----AEAYCNMGVIYKN 237 (689)
Q Consensus 162 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~ 237 (689)
.++-.+...|-+++|.+.-.+++++++.+..+...++.++...+++.++.+...+.-..-... ..-|...+..+..
T Consensus 180 myaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE 259 (491)
T KOG2610|consen 180 MYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIE 259 (491)
T ss_pred HHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhc
Confidence 455667788999999999999999999999999999999999999999999988754332211 2235566888889
Q ss_pred cCCHHHHHHHHHHHH
Q 005594 238 RGDLESAIACYERCL 252 (689)
Q Consensus 238 ~g~~~~A~~~~~~al 252 (689)
.+.|+.|+++|.+-+
T Consensus 260 ~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 260 GAEYEKALEIYDREI 274 (491)
T ss_pred ccchhHHHHHHHHHH
Confidence 999999999998754
No 244
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.96 E-value=2.1e-05 Score=52.08 Aligned_cols=39 Identities=28% Similarity=0.452 Sum_probs=17.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 005594 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 409 (689)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 409 (689)
+..+|.+|...|++++|++.|+++++.+|+++.++..+|
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 344444444444444444444444444444444444443
No 245
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.96 E-value=0.0086 Score=59.62 Aligned_cols=125 Identities=13% Similarity=0.065 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHH-HhcCCCcHHH
Q 005594 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALE----RPMYAEAYCNMGVIYKN---RGDLESAIACYERC-LAVSPNFEIA 261 (689)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~a-l~~~~~~~~~ 261 (689)
++++..++-..|....+|+.-+++.+.+-.. -++...+...+|.++.+ .|+.++|+..+..+ ....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4567778888899999999999999887666 45567788889999999 99999999999994 4555667777
Q ss_pred HhhHHHHHHHhhhh--hhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 005594 262 KNNMAIALTDLGTK--VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315 (689)
Q Consensus 262 ~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 315 (689)
+...+.+|..+-.. .......++|+..|.++.+.+|+. ..-.+++.++...|.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGH 274 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCC
Confidence 77777777665332 122334677777777777777533 333444445555554
No 246
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.96 E-value=0.0091 Score=64.54 Aligned_cols=177 Identities=23% Similarity=0.234 Sum_probs=121.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHh-----CCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHcC--
Q 005594 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQ-----NMGRLAFDSFSEAVKL-----DPQNACAHTHCGILYKDEG-- 130 (689)
Q Consensus 63 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g-- 130 (689)
+..+|.++++.+.+. .+..+...+|.++..- .|.+.|+.+|+.+.+. .-.++.+.+.+|.+|.+..
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 356788888887665 5778888889888755 5889999999998771 1125567788888888743
Q ss_pred ---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcC---ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-
Q 005594 131 ---RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG---NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE- 203 (689)
Q Consensus 131 ---~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~- 203 (689)
+.+.|..+|.++-.....+ + .+.+|.++.... +...|.++|..+.+ -.+..+.+.++.+|..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~~--a-------~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G 373 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNPD--A-------QYLLGVLYETGTKERDYRRAFEYYSLAAK--AGHILAIYRLALCYELG 373 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCch--H-------HHHHHHHHHcCCccccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhC
Confidence 6777888888887765443 2 334455444433 56788888888765 3457778888888764
Q ss_pred ---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc
Q 005594 204 ---LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR-GDLESAIACYERCLAV 254 (689)
Q Consensus 204 ---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 254 (689)
..+...|..++.++.+.. .+.+...++..+... +.++.+.-.+....+.
T Consensus 374 ~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 374 LGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAEL 426 (552)
T ss_pred CCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence 357788888888888776 345555555544433 6666666555554433
No 247
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.89 E-value=3e-05 Score=51.35 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 005594 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 376 (689)
Q Consensus 335 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 376 (689)
.++..+|..|...|++++|++.|+++++.+|+++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 355566666666666666666666666666666666666553
No 248
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.064 Score=58.69 Aligned_cols=63 Identities=13% Similarity=0.039 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005594 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (689)
Q Consensus 189 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 256 (689)
+.+.+|..+|.+..+.|...+|++.|-++ +++..|.....+..+.|.|++-++++.-+-+...
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR 1164 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc
Confidence 45789999999999999999999999775 6788888999999999999999999988876543
No 249
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.88 E-value=2.4e-05 Score=77.77 Aligned_cols=109 Identities=18% Similarity=0.120 Sum_probs=101.3
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005594 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (689)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (689)
++.+-..|..++..+.|+.|+..|.++++++|+.+..+-..+.++++.+++..|+..+.++++.+|....+|+..|....
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence 34556678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 005594 128 DEGRLVEAAESYHKALSADPSYKPAAECL 156 (689)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 156 (689)
..+++.+|...|++...+.|+.+.+...+
T Consensus 84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred hHHHHHHHHHHHHHhhhcCcCcHHHHHHH
Confidence 99999999999999999999998874443
No 250
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.83 E-value=0.00059 Score=66.74 Aligned_cols=129 Identities=10% Similarity=0.021 Sum_probs=107.1
Q ss_pred hhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 005594 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE-MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 352 (689)
Q Consensus 274 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 352 (689)
+...+.+..+.|...|.++.+..+....+|...|.+... .++.+.|..+|+.+++..|.+...|......+...++.+.
T Consensus 9 ~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~ 88 (280)
T PF05843_consen 9 RFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINN 88 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHH
Confidence 333445569999999999997666778999999999777 5566669999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 005594 353 AVECYQMALSIKPNFS---QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402 (689)
Q Consensus 353 A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 402 (689)
|..+|++++..-+... .+|......-.+.|+.+...++.+++.+..|+..
T Consensus 89 aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 89 ARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999998866654 5888888888899999999999999999988743
No 251
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.82 E-value=2.1e-05 Score=48.37 Aligned_cols=32 Identities=53% Similarity=0.701 Sum_probs=18.8
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 005594 391 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 422 (689)
Q Consensus 391 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 422 (689)
|+++++++|+++.+|++||.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555566666666666666666666655554
No 252
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.0002 Score=67.67 Aligned_cols=103 Identities=19% Similarity=0.165 Sum_probs=93.0
Q ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC----CHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 005594 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSG----NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (689)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (689)
.++.+-..|+.|++.++|..|+..|.+.|+..-. ++..|.+.+.|.+..|+|..|+..+.+++..+|.+..+++.-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 4667788999999999999999999999997544 456889999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005594 123 GILYKDEGRLVEAAESYHKALSADPSY 149 (689)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~p~~ 149 (689)
+.|++.+.++++|..+++..+.++.+.
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 999999999999999999987765543
No 253
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.80 E-value=2.8e-05 Score=77.36 Aligned_cols=131 Identities=16% Similarity=0.230 Sum_probs=99.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 005594 303 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382 (689)
Q Consensus 303 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 382 (689)
.-.-+...+..+.|+.|+..|.++++++|+++..+.+.+..+.+.+++..|+.-+.++++.+|....+|+..|.+....+
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 44556667777888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 005594 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (689)
Q Consensus 383 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (689)
++.+|...|++...+.|+++.+...+..+-... ...-|++++-..++++..
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~v-----s~~~fe~ai~~~~~d~~s 137 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECNKIV-----SEEKFEKAILTPEGDKKS 137 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHH-----HHHhhhhcccCCccCCcc
Confidence 888888888888888888887777666654332 334456666555544433
No 254
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.79 E-value=0.024 Score=61.42 Aligned_cols=246 Identities=15% Similarity=0.027 Sum_probs=161.5
Q ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC---------CHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCC-
Q 005594 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSG---------NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN- 115 (689)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 115 (689)
..++-.+..|.......++.+|..+..++...-+. ..+..-..|.+....|+.++|++..+.++..-|.+
T Consensus 413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence 34666778899999999999999999988765433 13455667888899999999999999999987764
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCCh--HHHHHHHHHHH----h
Q 005594 116 ----ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT--QDGIQKYYEAL----K 185 (689)
Q Consensus 116 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~--~~A~~~~~~al----~ 185 (689)
..++..+|.+..-.|++++|..+..++.+....... +.....+....+.++..+|+. .+....+...- .
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~-~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~ 571 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDV-YHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLE 571 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 446778889999999999999999998887544322 222334455567777778833 33333333222 2
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC--CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 005594 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE----RPM--YAE-AYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258 (689)
Q Consensus 186 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~--~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 258 (689)
..|.........+.++...-+++.+.....+.++. .|. ... .++.++.+....|+.++|...+.+......+.
T Consensus 572 q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 572 QKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred hcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 23333333334444444444466666666665553 222 222 23588999999999999999999887765443
Q ss_pred HHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHH
Q 005594 259 EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292 (689)
Q Consensus 259 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 292 (689)
.......+.++.........+|+..++.....+.
T Consensus 652 ~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 652 QYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred CCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 2222233333333334445577777777766653
No 255
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.78 E-value=4.9e-05 Score=47.13 Aligned_cols=33 Identities=42% Similarity=0.753 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005594 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (689)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (689)
.+|+++|.++..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 467777777777777777777777777777763
No 256
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.76 E-value=0.049 Score=53.36 Aligned_cols=129 Identities=12% Similarity=-0.023 Sum_probs=83.7
Q ss_pred HhCCHHHHHHHHHHHHHcC----CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhc-------CCCCHHHHHHHH
Q 005594 94 MQNMGRLAFDSFSEAVKLD----PQN----ACAHTHCGILYKDEG-RLVEAAESYHKALSA-------DPSYKPAAECLA 157 (689)
Q Consensus 94 ~~g~~~~A~~~~~~al~~~----p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~-------~p~~~~~~~~~a 157 (689)
+.|+.+.|..++.++-... |+. ...+++.|......+ ++++|..+++++.++ .....+......
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 4455555555555544322 111 234455566666666 777777777766655 233445555667
Q ss_pred HHHHHhHHHHHHcCChH---HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005594 158 IVLTDLGTSLKLAGNTQ---DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222 (689)
Q Consensus 158 ~~~~~l~~~~~~~~~~~---~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 222 (689)
.++..++.++...+..+ +|...++.+-...|+.+..+...-.+....++.+++.+.+.+++..-+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 77888888888877654 455566666666788888886666666668999999999999987644
No 257
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.016 Score=53.33 Aligned_cols=184 Identities=16% Similarity=0.113 Sum_probs=140.3
Q ss_pred chhhHHHHHHHHHhC-CCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhC-CHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005594 47 EGKDALSYANILRSR-NKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQN-MGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (689)
Q Consensus 47 ~~~~~~~~a~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (689)
+-+..+...++.+.. ..-..|+++...++..+|.+...|...-.++..++ +..+-++++.++++.+|+|..+|...-.
T Consensus 41 ~fr~~m~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ 120 (318)
T KOG0530|consen 41 DFRDVMDYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRV 120 (318)
T ss_pred hHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHH
Confidence 344555555554444 45689999999999999999988888777776554 6788899999999999999999999999
Q ss_pred HHHHcCCHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 005594 125 LYKDEGRLV-EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (689)
Q Consensus 125 ~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 203 (689)
+....|+.. .-++..+.++..+.++-.++.. .-.+....+.++.-+.+..+.++.+-.+-.+|...-.+...
T Consensus 121 ive~l~d~s~rELef~~~~l~~DaKNYHaWsh-------RqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~ 193 (318)
T KOG0530|consen 121 IVELLGDPSFRELEFTKLMLDDDAKNYHAWSH-------RQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITN 193 (318)
T ss_pred HHHHhcCcccchHHHHHHHHhccccchhhhHH-------HHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEe
Confidence 999999888 8889999999988888777443 33444455779999999999998877666666543222211
Q ss_pred -c-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005594 204 -L-----MQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237 (689)
Q Consensus 204 -~-----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 237 (689)
. -..+.-+.+..+.+...|++..+|..|.-++..
T Consensus 194 ~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 194 TKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred ccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 1 123455677788889999999999998888775
No 258
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.76 E-value=2.8e-05 Score=47.84 Aligned_cols=32 Identities=34% Similarity=0.615 Sum_probs=19.5
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005594 357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 388 (689)
Q Consensus 357 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 388 (689)
|+++++++|+++.+++++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45566666666666666666666666666554
No 259
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.76 E-value=0.05 Score=65.10 Aligned_cols=107 Identities=13% Similarity=0.140 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC----------c
Q 005594 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN-PT----------Y 401 (689)
Q Consensus 333 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~----------~ 401 (689)
..+.|...|.+....|+++.|..++-+|.+.. -+++....|..+...|+...|+..+++.++.+ |+ .
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~ 1746 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQS 1746 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchh
Confidence 46778888888888888888888877777665 56777788888888888888888888887652 22 1
Q ss_pred ------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCCCChhhHhh
Q 005594 402 ------AEAYNNLGVLYRDAGSI--SLAIDAYEQCLKIDPDSRNAGQN 441 (689)
Q Consensus 402 ------~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~ 441 (689)
..+...++......|++ +.-+.+|..+.++.|...+-+..
T Consensus 1747 ~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~ 1794 (2382)
T KOG0890|consen 1747 VNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYH 1794 (2382)
T ss_pred hhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceee
Confidence 12344444555555553 34556777788888755544433
No 260
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.0019 Score=60.64 Aligned_cols=71 Identities=17% Similarity=0.126 Sum_probs=48.0
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005594 180 YYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP--MYAEAYCNMGVIYKNRGDLESAIACYER 250 (689)
Q Consensus 180 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~ 250 (689)
+++.+..+|++.++.+.++..+...|+.++|.+.+-..++.+. .+..+...+-.++...|.-+.+...+++
T Consensus 225 l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 225 LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 3445566788888888888888888888888888877777643 3455666666677666654444444444
No 261
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.75 E-value=0.029 Score=67.04 Aligned_cols=133 Identities=13% Similarity=0.132 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005594 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 320 (689)
Q Consensus 241 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 320 (689)
..+-+-.+++++-..-.++.....++.++...+++....|.++.|...+-++.+.. -+.+....|..+...|+-..|+
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al 1722 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNAL 1722 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHH
Confidence 44444455554433222223344566777777777777777777777777666555 4567777777777777777777
Q ss_pred HHHHHHHhhC-CC----------C------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCCCCHHHHHHHH
Q 005594 321 VFYELAFHFN-PH----------C------AEACNNLGVIYKDRDNL--DKAVECYQMALSIKPNFSQSLNNLG 375 (689)
Q Consensus 321 ~~~~~al~~~-p~----------~------~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la 375 (689)
..+++.++.+ |+ . ..+...++......+++ ..-+++|..+.+..|.....++.+|
T Consensus 1723 ~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1723 SVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred HHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 7777777552 21 0 11222333333334432 3345666666666666555555555
No 262
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.73 E-value=8.2e-05 Score=46.12 Aligned_cols=33 Identities=36% Similarity=0.668 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005594 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (689)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (689)
.+++.+|.++..+|++++|+++|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 567777777777777777777777777777764
No 263
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.68 E-value=0.016 Score=57.78 Aligned_cols=178 Identities=12% Similarity=0.000 Sum_probs=128.4
Q ss_pred CHHHHHhHHHHHHHhCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHH-HhcCCCCHHH
Q 005594 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKL----DPQNACAHTHCGILYKD---EGRLVEAAESYHKA-LSADPSYKPA 152 (689)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~a-l~~~p~~~~~ 152 (689)
+++....+-.+|....+|+.-+++.+..-.. -++.+.+.+.+|.++.+ .|+.++|+..+..+ ....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4567777888899999999999988877666 45567788888999988 99999999999994 4556667777
Q ss_pred HHHHHHHHHHhHHH--HHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------Hh--
Q 005594 153 AECLAIVLTDLGTS--LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA--------LE-- 220 (689)
Q Consensus 153 ~~~~a~~~~~l~~~--~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~-- 220 (689)
.-..+.++..+-.. .......++|+..|.++.+.+|+ ...-.+++.++...|.-.+...-+++.. +.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 66667776665332 12234589999999999999965 3444566667777665443332222221 11
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 005594 221 --RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259 (689)
Q Consensus 221 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 259 (689)
.-.+...+-.++.+..-.|++++|.+.++++++..|..-
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 123455566777888889999999999999999987643
No 264
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=97.67 E-value=0.11 Score=58.79 Aligned_cols=335 Identities=13% Similarity=0.002 Sum_probs=178.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHHHh----C---CHHHHHHHHHHHHHcCCCCHHHHHH
Q 005594 52 LSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQ----N---MGRLAFDSFSEAVKLDPQNACAHTH 121 (689)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~ 121 (689)
+..-..++..+.|++|+..|+++-...|.. .++.+..|...+.+ | .+++|+..|++. .-.|.-|--|..
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 557 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLG 557 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHh
Confidence 344567788899999999999999998864 46888888887654 2 466777777664 345667778889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHH--------
Q 005594 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA-------- 193 (689)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-------- 193 (689)
.|.+|.++|++++-++++.-+++..|+.+......-.+.+.+-.+..... ..|....--++..-|.....
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHR--REALVFMLLALWIAPEKISSREEEKFLE 635 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 99999999999999999999999999988765554444444433333221 22222222222222221100
Q ss_pred ---------------------HHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005594 194 ---------------------YYN--LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250 (689)
Q Consensus 194 ---------------------~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 250 (689)
... --.+.+..|..---.+.++++....+ ..+..+.-.+...+|+++-+.+....
T Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (932)
T PRK13184 636 ILYHKQQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDLRD--YRALADIFYVACDLGNWEFFSQFSDI 713 (932)
T ss_pred HHHhhccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhccc--HHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 000 00111223333333445555555443 25555666666777887765554443
Q ss_pred HHhc-----CCCcHH--HHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHhcCCHH---HH
Q 005594 251 CLAV-----SPNFEI--AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD-AMYNLGVAYGEMLKFD---MA 319 (689)
Q Consensus 251 al~~-----~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~g~~~---~A 319 (689)
.-+. .|.+.. ....+...+..+. .......++++.+.+.. ..|.... +....+.-....++-+ .+
T Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (932)
T PRK13184 714 LAEVSDEITFTESIVEQKVEELMFFLKGLE-ALSNKEDYEKAFKHLDN---TDPTLILYAFDLFAIQALLDEEGESIIQL 789 (932)
T ss_pred HHHHhhhccchHHHHhhhHHHHHHHHHHHH-HHHccccHHHHHhhhhh---CCHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 3211 122111 1111111122221 11223455555543332 2222221 1122222222223322 22
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005594 320 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMAL--SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395 (689)
Q Consensus 320 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 395 (689)
++.+.+...-..............|.-..++++|-+.+..-- ....+...+....|.-+...++-+-|...|..+.
T Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (932)
T PRK13184 790 LQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCR 867 (932)
T ss_pred HHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhcc
Confidence 222222221111223334455566666777777777763321 1123345566666766666777777777776665
No 265
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.018 Score=53.00 Aligned_cols=191 Identities=14% Similarity=0.098 Sum_probs=125.0
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHH
Q 005594 97 MGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDG 176 (689)
Q Consensus 97 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A 176 (689)
+|.++..+|+.++..+.. -..|+..-+.++.++|.+-..+...-.++..+. .+..+-
T Consensus 41 ~fr~~m~YfRAI~~~~E~-----------------S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~------~dL~~E 97 (318)
T KOG0530|consen 41 DFRDVMDYFRAIIAKNEK-----------------SPRALQLTEDAIRLNPANYTVWQYRRVILRHLM------SDLNKE 97 (318)
T ss_pred hHHHHHHHHHHHHhcccc-----------------CHHHHHHHHHHHHhCcccchHHHHHHHHHHHhH------HHHHHH
Confidence 455556665555544433 345556666677777777776665555554443 346667
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005594 177 IQKYYEALKIDPHYAPAYYNLGVVYSELMQYD-TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (689)
Q Consensus 177 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 255 (689)
++++.+.++.+|++-.+|...-.+....|++. .-++..+.++..+..+..+|...--+...-+.++.-+.+..+.++.+
T Consensus 98 l~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~D 177 (318)
T KOG0530|consen 98 LEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEED 177 (318)
T ss_pred HHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 77888888888888888888877777888777 77788888888888888888888888888888888888888888776
Q ss_pred CCcHHHHhhHHHHHHH-hhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 005594 256 PNFEIAKNNMAIALTD-LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 312 (689)
Q Consensus 256 ~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 312 (689)
-.+..++...-.+... .| .......+.-+.+..+.+...|++..+|..|.-++..
T Consensus 178 i~NNSAWN~Ryfvi~~~~~--~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 178 IRNNSAWNQRYFVITNTKG--VISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred hhccchhheeeEEEEeccC--CccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 6555444432111111 00 0001123444566667777777777777777666664
No 266
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.0098 Score=56.07 Aligned_cols=56 Identities=25% Similarity=0.207 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHH
Q 005594 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106 (689)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 106 (689)
.+..+......|++.+|...|+.++...|++.++...++.|+...|+.+.|...+.
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~ 192 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILA 192 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHH
Confidence 34444455555555555555555555555555555555555555555555554443
No 267
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.60 E-value=0.17 Score=55.10 Aligned_cols=304 Identities=15% Similarity=0.040 Sum_probs=174.3
Q ss_pred HHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005594 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA-CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160 (689)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~ 160 (689)
.+.+..-+.-+...|...+|++..-.+ .+|... ......+.-+...++.. .+..+++.-|... ........
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~ls----ll~~~~~~lP~~~--l~~~P~Lv 418 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELS----LLLAWLKALPAEL--LASTPRLV 418 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchH----HHHHHHHhCCHHH--HhhCchHH
Confidence 455556666666777777777654332 122211 11222233333333322 2222222223211 11111223
Q ss_pred HHhHHHHHHcCChHHHHHHHHHHHhhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HH
Q 005594 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPH---------YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AE 226 (689)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~ 226 (689)
...+.......++.+|..+..++...-+. ..+..-..|.+....|+.++|++..+.++..-|.+ ..
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 34556667788999999888887655333 13445566888889999999999999999886654 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHH--HHHHHHH----HhhCCCCH
Q 005594 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG--VAYYKKA----LYYNWHYA 300 (689)
Q Consensus 227 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A--~~~~~~a----l~~~~~~~ 300 (689)
++..+|.+..-.|++++|..+...+.+....... +..-..+....+.+...+|+...+ ...+... +...|.+.
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~-~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~ 577 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDV-YHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHE 577 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccch
Confidence 6788899999999999999999998887544332 222233444455566666733222 2222222 22233333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCC--HH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----H
Q 005594 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHF----NPHC--AE-ACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-----S 368 (689)
Q Consensus 301 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~--~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~ 368 (689)
-.....+.++...-+++.+.......++. .|.. .. .+..++.+....|++++|...+.+...+-.+. .
T Consensus 578 f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~ 657 (894)
T COG2909 578 FLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDY 657 (894)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchH
Confidence 33333344443333366666666555554 2222 22 23488999999999999999988877653222 1
Q ss_pred HH--HHHHHHHHHHcCCHHHHHHHHHHH
Q 005594 369 QS--LNNLGVVYTVQGKMDAAAEMIEKA 394 (689)
Q Consensus 369 ~~--~~~la~~~~~~g~~~~A~~~~~~a 394 (689)
.+ ..........+|+..+|.....+.
T Consensus 658 ~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 658 LAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 11 122222334578999988888774
No 268
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.55 E-value=0.00012 Score=69.55 Aligned_cols=98 Identities=16% Similarity=0.096 Sum_probs=91.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 005594 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG 130 (689)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 130 (689)
.-..|...+..|.+++|++.|..+++++|.....+...+.+++++++...|+..+..+++++|+....+-..+.....+|
T Consensus 117 ~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg 196 (377)
T KOG1308|consen 117 KKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLG 196 (377)
T ss_pred HHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhh
Confidence 34467778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCC
Q 005594 131 RLVEAAESYHKALSADPS 148 (689)
Q Consensus 131 ~~~~A~~~~~~al~~~p~ 148 (689)
++++|...+..+.+++-+
T Consensus 197 ~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 197 NWEEAAHDLALACKLDYD 214 (377)
T ss_pred chHHHHHHHHHHHhcccc
Confidence 999999999999987654
No 269
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.48 E-value=0.00028 Score=43.66 Aligned_cols=32 Identities=28% Similarity=0.500 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005594 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (689)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (689)
.+|+++|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 270
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00065 Score=64.30 Aligned_cols=102 Identities=21% Similarity=0.194 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 005594 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (689)
Q Consensus 336 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 411 (689)
.+-.-|.-|++.++|..|+..|.+.++..-.+ ...|.+.+-+....|+|..|+....+++.++|.+..+++.-+.|
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 34445666666666777777777666654333 33566666666777777777777777777777777777777777
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCChh
Q 005594 412 YRDAGSISLAIDAYEQCLKIDPDSRN 437 (689)
Q Consensus 412 ~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (689)
+..+.++.+|..+.+..++++-+...
T Consensus 163 ~~eLe~~~~a~nw~ee~~~~d~e~K~ 188 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEGLQIDDEAKK 188 (390)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 77777777777776666666555443
No 271
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.45 E-value=0.0096 Score=52.40 Aligned_cols=117 Identities=24% Similarity=0.146 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q 005594 318 MAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMI 391 (689)
Q Consensus 318 ~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~ 391 (689)
+.....++....++.+ ..+...++..+...+++++|+..++.++....+. .-+-.+|+.+...+|.+++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4444445555555444 2345678888999999999999999998654332 336778999999999999999988
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005594 392 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (689)
Q Consensus 392 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (689)
....... =.+......|.++...|+.++|+..|+++++.+++.
T Consensus 150 ~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 150 DTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred hcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 7643221 013345678999999999999999999999998554
No 272
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.45 E-value=0.15 Score=50.88 Aligned_cols=142 Identities=12% Similarity=-0.044 Sum_probs=82.9
Q ss_pred cccCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 005594 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (689)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (689)
..+.+.-.++.+.+.+-.+|.+++-.+.|++...-.|--+.+|...-..-+..+++..-..+|.+++...-+ ...|...
T Consensus 37 dNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~-ldLW~lY 115 (660)
T COG5107 37 DNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN-LDLWMLY 115 (660)
T ss_pred cCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-HhHHHHH
Confidence 345567788899999999999999999999988877777777766666566677888888888888865432 3444332
Q ss_pred HHHHHHcC---------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---hHHHHHHcCChHHHHHHHHHHHhh
Q 005594 123 GILYKDEG---------RLVEAAESYHKALSADPSYKPAAECLAIVLTD---LGTSLKLAGNTQDGIQKYYEALKI 186 (689)
Q Consensus 123 a~~~~~~g---------~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~---l~~~~~~~~~~~~A~~~~~~al~~ 186 (689)
-..-.+.+ ..-+|.+..-...-.+|.....|......+.. ++. ...+.+.+.-...|.+++..
T Consensus 116 l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~k-wEeQqrid~iR~~Y~ral~t 190 (660)
T COG5107 116 LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGK-WEEQQRIDKIRNGYMRALQT 190 (660)
T ss_pred HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhcccccc-HHHHHHHHHHHHHHHHHHcC
Confidence 22222211 12233333323333456655554443332211 111 12334455555666666654
No 273
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.44 E-value=0.0043 Score=54.21 Aligned_cols=95 Identities=20% Similarity=0.120 Sum_probs=75.8
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC----------------------HHHHHhHHHHHHHhCCHHHHHHHHHH
Q 005594 50 DALSYANILRSRNKFVDALALYEIVLEKDSGN----------------------VEAHIGKGICLQMQNMGRLAFDSFSE 107 (689)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~~ 107 (689)
.+...|......|+...++..+++++...... ..+...++..+...|++++|+..+++
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 44556777788999999999999999874221 13555677788889999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005594 108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALS 144 (689)
Q Consensus 108 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 144 (689)
++..+|.+..++..+..++...|+..+|+..|++..+
T Consensus 88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988754
No 274
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.43 E-value=0.00041 Score=42.88 Aligned_cols=31 Identities=32% Similarity=0.502 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005594 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (689)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (689)
++..+|.++..+|++++|+++|+++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4445555555555555555555555555554
No 275
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.37 E-value=0.0066 Score=52.99 Aligned_cols=62 Identities=24% Similarity=0.360 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005594 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (689)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (689)
.+...++..+...|++++|+..+++++..+|.+..++..+..+|...|+..+|++.|+++.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35667788888999999999999999999999999999999999999999999999988754
No 276
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.37 E-value=0.19 Score=50.18 Aligned_cols=143 Identities=9% Similarity=-0.004 Sum_probs=94.4
Q ss_pred HHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005594 70 LYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSY 149 (689)
Q Consensus 70 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 149 (689)
-++.-++.+|++...|+.+..-+..++.+++-.+.+++...-.|--+.+|...-.--...+++......|.+++...-+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~- 108 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN- 108 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-
Confidence 3455578899999999999999999999999999999999888888888876666566677888888888888865433
Q ss_pred HHHHHHHHHHHHHhHHHHHHc------C----ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH---------HcCCHHHH
Q 005594 150 KPAAECLAIVLTDLGTSLKLA------G----NTQDGIQKYYEALKIDPHYAPAYYNLGVVYS---------ELMQYDTA 210 (689)
Q Consensus 150 ~~~~~~~a~~~~~l~~~~~~~------~----~~~~A~~~~~~al~~~~~~~~~~~~la~~~~---------~~g~~~~A 210 (689)
.+.|.. |. .|.+. | ..-+|.+..-...-.+|.....|...+..+. ++.+.+.-
T Consensus 109 ldLW~l----Yl----~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~i 180 (660)
T COG5107 109 LDLWML----YL----EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKI 180 (660)
T ss_pred HhHHHH----HH----HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHH
Confidence 222211 11 11111 1 1122333222233346777677776665543 33455666
Q ss_pred HHHHHHHHHhC
Q 005594 211 LGCYEKAALER 221 (689)
Q Consensus 211 ~~~~~~al~~~ 221 (689)
...|.+++...
T Consensus 181 R~~Y~ral~tP 191 (660)
T COG5107 181 RNGYMRALQTP 191 (660)
T ss_pred HHHHHHHHcCc
Confidence 67778877643
No 277
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.36 E-value=0.22 Score=50.60 Aligned_cols=75 Identities=16% Similarity=0.182 Sum_probs=44.0
Q ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCC-HHHHHHHHHHHHHcCCCCHHHHHH
Q 005594 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNM-GRLAFDSFSEAVKLDPQNACAHTH 121 (689)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~ 121 (689)
+..-|........+.+.+.+--.+|.+++..+|++++.|..-|.-.+..+. .+.|...|.++++.+|+++..|..
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKE 179 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHH
Confidence 444455555555555556666666666666666666666666655555443 566666666666666666655543
No 278
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.33 E-value=0.22 Score=49.97 Aligned_cols=338 Identities=12% Similarity=-0.006 Sum_probs=179.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCC---------------
Q 005594 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN--------------- 115 (689)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--------------- 115 (689)
+..+....+-.++.+.-...+-..-+..|..+......|...++.+++.+|++.+....+.-...
T Consensus 48 l~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~d 127 (549)
T PF07079_consen 48 LGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSD 127 (549)
T ss_pred HhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhH
Confidence 33333344555666666666666666788888888889999999999999999988776542111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHhHHHHHH----cCChHHHHHHHHHH---
Q 005594 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPS-----YKPAAECLAIVLTDLGTSLKL----AGNTQDGIQKYYEA--- 183 (689)
Q Consensus 116 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~a~~~~~l~~~~~~----~~~~~~A~~~~~~a--- 183 (689)
...-...+.++...|++.++...+++.+..--. +.+.+... ...+|+.|.. ....+-+..+|+.+
T Consensus 128 f~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~---vlmlsrSYfLEl~e~~s~dl~pdyYemilfY 204 (549)
T PF07079_consen 128 FFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA---VLMLSRSYFLELKESMSSDLYPDYYEMILFY 204 (549)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH---HHHHhHHHHHHHHHhcccccChHHHHHHHHH
Confidence 112234578899999999999999988764222 22221111 1122222221 11111111111111
Q ss_pred ----Hhh------------------------CCCC-----HHHHHHHHHHHH--------------HcCCHHHHHHHHHH
Q 005594 184 ----LKI------------------------DPHY-----APAYYNLGVVYS--------------ELMQYDTALGCYEK 216 (689)
Q Consensus 184 ----l~~------------------------~~~~-----~~~~~~la~~~~--------------~~g~~~~A~~~~~~ 216 (689)
-.. -|.. ..++.+..+.|. -..+.+++....+.
T Consensus 205 ~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce~ 284 (549)
T PF07079_consen 205 LKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMSDPEQVGHFCEA 284 (549)
T ss_pred HHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhcChHHHHHHHHH
Confidence 100 1110 011111100000 00122222222222
Q ss_pred HHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH------------------------------
Q 005594 217 AALE-----RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA------------------------------ 261 (689)
Q Consensus 217 al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------------------------ 261 (689)
.... ...-....-.+-....+.++...|.+++.-...++|+....
T Consensus 285 ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~l 364 (549)
T PF07079_consen 285 IASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNL 364 (549)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHH
Confidence 2111 00111122222233445667777777776666666653211
Q ss_pred ----------HhhHHHHHHHhhhhhhhcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHh
Q 005594 262 ----------KNNMAIALTDLGTKVKLEGD-INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV--FYELAFH 328 (689)
Q Consensus 262 ----------~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~ 328 (689)
...++..+...+.-+-..|. -++|+..++.+++..+.+.......-.. -...|.+|+. .+.+.+.
T Consensus 365 we~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~f--vKq~Y~qaLs~~~~~rLlk 442 (549)
T PF07079_consen 365 WEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLF--VKQAYKQALSMHAIPRLLK 442 (549)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHH--HHHHHHHHHhhhhHHHHHH
Confidence 11111122222333334444 7888888888888887776433221111 1111222221 1222222
Q ss_pred h---------CC---CCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594 329 F---------NP---HCAEACNNLG--VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 394 (689)
Q Consensus 329 ~---------~p---~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 394 (689)
+ .| .+.+.-+.++ ..++.+|+|.++.-+-.=..++.| .+.++..+|.++....+|++|..++...
T Consensus 443 Le~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 443 LEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 1 11 2344444454 457789999999988888888999 8999999999999999999999998754
No 279
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.30 E-value=0.00026 Score=67.34 Aligned_cols=85 Identities=20% Similarity=0.256 Sum_probs=42.7
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005594 313 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 392 (689)
Q Consensus 313 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 392 (689)
.|.++.|++.+..++.++|.....+...+.++.++++...|+.-+..+++++|+...-+-..+.....+|++++|...+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555544444444444444555555555555
Q ss_pred HHHHh
Q 005594 393 KAIAA 397 (689)
Q Consensus 393 ~al~~ 397 (689)
.+.++
T Consensus 207 ~a~kl 211 (377)
T KOG1308|consen 207 LACKL 211 (377)
T ss_pred HHHhc
Confidence 54444
No 280
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.27 E-value=0.00047 Score=42.60 Aligned_cols=32 Identities=41% Similarity=0.817 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005594 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (689)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (689)
.+++.+|.+|..+|++++|..+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46777777777788888888888877777774
No 281
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.27 E-value=0.11 Score=51.48 Aligned_cols=129 Identities=27% Similarity=0.326 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcC-------
Q 005594 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRD------- 348 (689)
Q Consensus 281 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g------- 348 (689)
+..+|..+|+.+. ....+.+.+.+|.++.. ..+..+|..+|+++.+..... ......++..+..-.
T Consensus 92 ~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~ 169 (292)
T COG0790 92 DKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAY 169 (292)
T ss_pred cHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccH
Confidence 3455555555222 23344555556665555 336666666666666654333 234555666555431
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 005594 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416 (689)
Q Consensus 349 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 416 (689)
+...|...|.++-... ++.+...+|.+|.. ..++.+|..+|+++.+... ....+.++ ++...|
T Consensus 170 ~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 170 DDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 2347888888877664 67788888887765 3478899999999888766 77888888 666555
No 282
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.27 E-value=0.4 Score=51.80 Aligned_cols=369 Identities=13% Similarity=-0.016 Sum_probs=211.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH---HcCCHHHHHHH
Q 005594 62 NKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK---DEGRLVEAAES 138 (689)
Q Consensus 62 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~ 138 (689)
+.-++=+.-++.-+..++.+...+..|-.++...|++++-...-.++.++.|..+..|.....-.. ..++-.++...
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence 444555666677777888888899999999999999998888888888888888888766553322 34778888999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCC-------CHHHHHHHHHHHHHcCCHHHHH
Q 005594 139 YHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-------YAPAYYNLGVVYSELMQYDTAL 211 (689)
Q Consensus 139 ~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-------~~~~~~~la~~~~~~g~~~~A~ 211 (689)
|++++.-. .....|...+......+..+...++++.-...|.+++..-.. ..+.+...-..|...-..++-+
T Consensus 173 ~ekal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~ 251 (881)
T KOG0128|consen 173 FEKALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVI 251 (881)
T ss_pred HHHHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99998643 345556666666666666667778899999999998875222 2344555556666666667777
Q ss_pred HHHHHHHHhCCCC---HHHHHHHH---HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHH
Q 005594 212 GCYEKAALERPMY---AEAYCNMG---VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285 (689)
Q Consensus 212 ~~~~~al~~~p~~---~~~~~~la---~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 285 (689)
.++...+...-+. ...+.... .......+++.|..-+.+.+.............-..+...-+.....|....-
T Consensus 252 a~~~~el~~~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri 331 (881)
T KOG0128|consen 252 ALFVRELKQPLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRI 331 (881)
T ss_pred HHHHHHHhccchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHH
Confidence 8887777654211 11111111 11223445566655554444333222222222222333333444556777777
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCCCHHH----------------------------
Q 005594 286 VAYYKKALYYNWHYADAMYNLGVAYGE-MLKFDMAIVFYELAFHFNPHCAEA---------------------------- 336 (689)
Q Consensus 286 ~~~~~~al~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~---------------------------- 336 (689)
...+++++...+.+...|...+...-. ++-.+.+...+.+++...|-....
T Consensus 332 ~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~ 411 (881)
T KOG0128|consen 332 QLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSM 411 (881)
T ss_pred HHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHH
Confidence 777777776666666666555543311 111111111111111111111000
Q ss_pred ---HHHHHHHHH-HcC-------------CHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Q 005594 337 ---CNNLGVIYK-DRD-------------NLDKAVECYQMALSI-KPNFSQSLNNLGVVYTV-QGKMDAAAEMIEKAIAA 397 (689)
Q Consensus 337 ---~~~la~~~~-~~g-------------~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 397 (689)
+.+....+. ..+ .+..|..+|...... -......+...|.+... +++.+.|..+.+..+..
T Consensus 412 ~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty 491 (881)
T KOG0128|consen 412 TVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTY 491 (881)
T ss_pred HHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccC
Confidence 111111111 111 223333333333322 11123344455555443 56778888777777666
Q ss_pred CCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594 398 NPTYAE-AYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (689)
Q Consensus 398 ~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (689)
...... .|.....+-...|+...++..+++|+..
T Consensus 492 ~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~ 526 (881)
T KOG0128|consen 492 GGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQ 526 (881)
T ss_pred CcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhc
Confidence 555444 7888888888889999999988888764
No 283
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.22 E-value=0.096 Score=46.35 Aligned_cols=120 Identities=22% Similarity=0.136 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHH
Q 005594 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTA 210 (689)
Q Consensus 134 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A 210 (689)
+.....++....++.+.-+ ......++..+...+++++|+..++.++....+. ..+-.+++.+...+|++++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya----~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYA----VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHH----HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4445555555555554433 2235567888888999999999999888654432 44567889999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 005594 211 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258 (689)
Q Consensus 211 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 258 (689)
+..+...... .-.+......|.++...|+-++|...|++++...++.
T Consensus 146 L~~L~t~~~~-~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 146 LKTLDTIKEE-SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHhccccc-cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 9988764321 1123446678999999999999999999999887543
No 284
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.20 E-value=0.048 Score=54.54 Aligned_cols=135 Identities=12% Similarity=0.091 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHH
Q 005594 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN---RGDLESAIACYE 249 (689)
Q Consensus 173 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~ 249 (689)
.+.-+.+|++|++.+|++...+..+-.+..+..+.++..+-+++++..+|++...|...-..... .-.++.....|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 45678899999999999999999988899999999999999999999999998888766554443 335778888888
Q ss_pred HHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005594 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 329 (689)
Q Consensus 250 ~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 329 (689)
+++..-....... . ......... -.. ...++..+.....+.|..+.|+..++..+++
T Consensus 127 ~~l~~L~~~~~~~----------~---~~~~~~~~~---e~~-------~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 127 KCLRALSRRRSGR----------M---TSHPDLPEL---EEF-------MLYVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHHHhhccc----------c---ccccchhhH---HHH-------HHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 8876422211000 0 000000000 000 1245566777788888888888888888887
Q ss_pred C
Q 005594 330 N 330 (689)
Q Consensus 330 ~ 330 (689)
+
T Consensus 184 n 184 (321)
T PF08424_consen 184 N 184 (321)
T ss_pred H
Confidence 4
No 285
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.18 E-value=0.29 Score=48.54 Aligned_cols=187 Identities=22% Similarity=0.220 Sum_probs=135.7
Q ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHh----CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---
Q 005594 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQ----NMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD--- 128 (689)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--- 128 (689)
......+++..|...+.++-.. .+......++.++... .+..+|...|+.+. ...++.+.+.+|.+|..
T Consensus 49 ~~~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~g 124 (292)
T COG0790 49 AGSAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRG 124 (292)
T ss_pred ccccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCC
Confidence 3344678899999999988663 3347788888887654 36788999999544 45678899999999987
Q ss_pred -cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHc-------CChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 005594 129 -EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA-------GNTQDGIQKYYEALKIDPHYAPAYYNLGVV 200 (689)
Q Consensus 129 -~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~-------~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 200 (689)
..+..+|..+|+++.+...... +.....++..+..- .+...|...|.++-... +..+...+|.+
T Consensus 125 v~~d~~~A~~~~~~Aa~~g~~~a------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~ 196 (292)
T COG0790 125 VPLDLVKALKYYEKAAKLGNVEA------ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRM 196 (292)
T ss_pred cccCHHHHHHHHHHHHHcCChhH------HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHH
Confidence 4599999999999998754432 11133344443332 13347888888887765 78889999988
Q ss_pred HHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHhcCCC
Q 005594 201 YSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG---------------DLESAIACYERCLAVSPN 257 (689)
Q Consensus 201 ~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------------~~~~A~~~~~~al~~~~~ 257 (689)
|.. ..++.+|..+|.++.+... ....+.++ ++...| +...|...+..+....+.
T Consensus 197 y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 197 YEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred HHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 865 4589999999999998766 78888888 666655 666677777666655443
No 286
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.12 E-value=0.035 Score=55.51 Aligned_cols=114 Identities=11% Similarity=-0.030 Sum_probs=84.2
Q ss_pred HHHHHHHHhCCCCHHHHHhHHHHHHHhCC------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005594 69 ALYEIVLEKDSGNVEAHIGKGICLQMQNM------------GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAA 136 (689)
Q Consensus 69 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 136 (689)
..|++.++.+|.+.++|..+....-..-. .+.-+.+|++|++.+|++...+..+-.+..+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45778888999999999988876544422 456778999999999999999988888888888999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhh
Q 005594 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (689)
Q Consensus 137 ~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 186 (689)
+.+++++..+|++...|..+.. .-......-.++.....|.+++..
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~----~~q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLD----FRQSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHH----HHHHHhccCcHHHHHHHHHHHHHH
Confidence 9999999999998877654322 111112233566666666666643
No 287
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.08 E-value=0.53 Score=49.72 Aligned_cols=80 Identities=14% Similarity=0.009 Sum_probs=49.0
Q ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCH---------HHHHHHHHHHH
Q 005594 57 ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---------CAHTHCGILYK 127 (689)
Q Consensus 57 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~la~~~~ 127 (689)
.+...=..++|+++. +.+| ++..|..+|......-.++-|...|-+.-.. +.-. .--...+.+-.
T Consensus 672 ~Lve~vgledA~qfi----EdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~ 745 (1189)
T KOG2041|consen 672 NLVEAVGLEDAIQFI----EDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISA 745 (1189)
T ss_pred HHHHHhchHHHHHHH----hcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhh
Confidence 344444567777664 4455 6789999999888888888888877765321 1110 00123344555
Q ss_pred HcCCHHHHHHHHHHH
Q 005594 128 DEGRLVEAAESYHKA 142 (689)
Q Consensus 128 ~~g~~~~A~~~~~~a 142 (689)
--|++++|.+.|-.+
T Consensus 746 ~~g~feeaek~yld~ 760 (1189)
T KOG2041|consen 746 FYGEFEEAEKLYLDA 760 (1189)
T ss_pred hhcchhHhhhhhhcc
Confidence 567888887777543
No 288
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.97 E-value=0.85 Score=50.17 Aligned_cols=357 Identities=7% Similarity=-0.101 Sum_probs=173.8
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005594 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (689)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (689)
.+..+..|...+..|++.++..+..++ ...|- ..+..........+. .....+...++.+|+.+..-........
T Consensus 33 ~r~~f~~A~~a~~~g~~~~~~~~~~~l-~d~pL--~~yl~y~~L~~~l~~--~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~ 107 (644)
T PRK11619 33 QRQRYQQIKQAWDNRQMDVVEQLMPTL-KDYPL--YPYLEYRQLTQDLMN--QPAVQVTNFIRANPTLPPARSLQSRFVN 107 (644)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhc-cCCCc--HhHHHHHHHHhcccc--CCHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence 467899999999999999987776653 33332 222222222222221 1223556667778887766555544433
Q ss_pred ---HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 005594 128 ---DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (689)
Q Consensus 128 ---~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 204 (689)
+.+++..-+.++ ...|.+... ....+......|+.++|.....++-......+.....+-..+.+.
T Consensus 108 ~La~~~~w~~~~~~~----~~~p~~~~~-------~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~ 176 (644)
T PRK11619 108 ELARREDWRGLLAFS----PEKPKPVEA-------RCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQS 176 (644)
T ss_pred HHHHccCHHHHHHhc----CCCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHc
Confidence 344555444422 123554443 233444556668877777666666544443344443333333333
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH-----------HHHH-cCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHh
Q 005594 205 MQYDTALGCYEKAALERPMYAEAYCNMGV-----------IYKN-RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 272 (689)
Q Consensus 205 g~~~~A~~~~~~al~~~p~~~~~~~~la~-----------~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 272 (689)
|......-.-+--+....++......+.. .... ..+...+...+ ...+............+..+
T Consensus 177 g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~----~~~~~~~~~~~~~~~~l~Rl 252 (644)
T PRK11619 177 GKQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFA----RTTGPTDFTRQMAAVAFASV 252 (644)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHh----hccCCChhhHHHHHHHHHHH
Confidence 33322221111111111111111111111 1110 11111111111 11111110111111222222
Q ss_pred hhhhhhcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 005594 273 GTKVKLEGDINQGVAYYKKALYYNWHYA----DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348 (689)
Q Consensus 273 ~~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 348 (689)
...+.+.|...+.+......-+. .+...+|.-....+...+|...+..+..... +....-....+....+
T Consensus 253 -----ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~~~ 326 (644)
T PRK11619 253 -----ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALGTG 326 (644)
T ss_pred -----HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHHcc
Confidence 35577888888876644443332 2333444433333335666666665543322 2233333334445778
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----------------------H----
Q 005594 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----------------------A---- 402 (689)
Q Consensus 349 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~---- 402 (689)
+++.+...+...-....+.....+.+|..+...|+.++|...|+++... .+. .
T Consensus 327 dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~-~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~ 405 (644)
T PRK11619 327 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ-RGFYPMVAAQRLGEEYPLKIDKAPKPDSAL 405 (644)
T ss_pred CHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC-CCcHHHHHHHHcCCCCCCCCCCCCchhhhh
Confidence 8887777777654434455677888888888888888888888887431 110 0
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594 403 --EAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (689)
Q Consensus 403 --~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (689)
......+..+...|+..+|...+..++..
T Consensus 406 ~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~ 436 (644)
T PRK11619 406 TQGPEMARVRELMYWNMDNTARSEWANLVAS 436 (644)
T ss_pred ccChHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 01233445566667777777776666654
No 289
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.97 E-value=0.0025 Score=59.61 Aligned_cols=78 Identities=26% Similarity=0.210 Sum_probs=62.7
Q ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005594 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (689)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (689)
++...+..|......|+.++|..+|+.++...|.+++++..+|......++.-+|-.+|-+++.++|.+.+++.+.+.
T Consensus 115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 115 EAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 344556667777888888888888888888888888888888888888888888888888888888888887766654
No 290
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.91 E-value=0.049 Score=55.08 Aligned_cols=143 Identities=17% Similarity=0.049 Sum_probs=99.6
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------------C------------CCC---HHHHHHHHH
Q 005594 292 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--------------N------------PHC---AEACNNLGV 342 (689)
Q Consensus 292 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~------------p~~---~~~~~~la~ 342 (689)
.++.+|-+.+++..++.++..+|+.+.|.+.+++++-. + +.| -.+++....
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 34668889999999999999999999998888888632 1 112 234455666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHc
Q 005594 343 IYKDRDNLDKAVECYQMALSIKPN-FSQ-SLNNLGVVYTVQGKMDAAAEMIEKAIAANP-----TYAEAYNNLGVLYRDA 415 (689)
Q Consensus 343 ~~~~~g~~~~A~~~~~~al~~~p~-~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~ 415 (689)
.+.+.|-+..|.++.+-.+.++|. ++- +++.+-....+.++++--++.++....... .-+...+..+.++...
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l 191 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRL 191 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHh
Confidence 777888888888888888888887 654 444444455566777766666666544211 1234566777777777
Q ss_pred CCH---------------HHHHHHHHHHHhcCCC
Q 005594 416 GSI---------------SLAIDAYEQCLKIDPD 434 (689)
Q Consensus 416 g~~---------------~~A~~~~~~al~~~p~ 434 (689)
++. ++|...+.+|+...|.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 192 EKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred cCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 777 7788888888777765
No 291
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.87 E-value=0.0093 Score=47.41 Aligned_cols=92 Identities=18% Similarity=0.152 Sum_probs=76.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCH---HHHHhHHHHHHHhCC-----------HHHHHHHHHHHHHcCCCCHHHH
Q 005594 54 YANILRSRNKFVDALALYEIVLEKDSGNV---EAHIGKGICLQMQNM-----------GRLAFDSFSEAVKLDPQNACAH 119 (689)
Q Consensus 54 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~ 119 (689)
+|..++.+|++-+|+++.+..+...+++. ..+...|.++..+.. .-.+++.|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57889999999999999999999888765 566777888765542 2358899999999999998889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594 120 THCGILYKDEGRLVEAAESYHKALSA 145 (689)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~al~~ 145 (689)
+.+|.-+.....|+++....++++.+
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 99988877777888888888888765
No 292
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.81 E-value=0.0011 Score=41.40 Aligned_cols=27 Identities=48% Similarity=0.797 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594 405 YNNLGVLYRDAGSISLAIDAYEQCLKI 431 (689)
Q Consensus 405 ~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (689)
+.+||.+|..+|++++|+++|++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556666677777777777777664433
No 293
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.76 E-value=0.099 Score=48.40 Aligned_cols=196 Identities=13% Similarity=-0.001 Sum_probs=121.4
Q ss_pred hCCCHHHHHHHHHHHHHhCCCCH----HHHHhHHHHHHHhCCHHHHHHHHHHHHHcC-----CCC-HHHHHHHHHHHHHc
Q 005594 60 SRNKFVDALALYEIVLEKDSGNV----EAHIGKGICLQMQNMGRLAFDSFSEAVKLD-----PQN-ACAHTHCGILYKDE 129 (689)
Q Consensus 60 ~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~-~~~~~~la~~~~~~ 129 (689)
...+.++|+.-|+++++..+... .++-.+..+.++++++++-.+.|.+.+..- .+. ......+-..-...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 34589999999999999988754 477788889999999999999998877531 111 11111111111223
Q ss_pred CCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCC------------CCHHHHH
Q 005594 130 GRLVEAAESYHKALSA--DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP------------HYAPAYY 195 (689)
Q Consensus 130 g~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~------------~~~~~~~ 195 (689)
.+.+--.+.|+..+.. +..+...|+ ..-..+|.+++..+++.+-.+.+.+.-.... .-.++|.
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWF---KTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYA 195 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWF---KTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYA 195 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeee---eccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHh
Confidence 3333334444443332 111111111 1134577778877888777766666543311 1245555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 005594 196 NLGVVYSELMQYDTALGCYEKAALERPMY--AEAYC----NMGVIYKNRGDLESAIACYERCLAVSPNF 258 (689)
Q Consensus 196 ~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~~~~ 258 (689)
.-...|..+++..+-...|++++.+...- +...- .=|..+.+.|++++|-..|-++++.....
T Consensus 196 lEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEs 264 (440)
T KOG1464|consen 196 LEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDES 264 (440)
T ss_pred hHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccccc
Confidence 66678888888888889999998765332 22221 12456788899999999998888765543
No 294
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.75 E-value=0.0052 Score=57.53 Aligned_cols=64 Identities=28% Similarity=0.386 Sum_probs=40.4
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhH
Q 005594 379 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (689)
Q Consensus 379 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (689)
.+.|+.++|...|+.++.+.|++++++..+|......++.-+|-++|-+|+.++|.+.++..|+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR 190 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNR 190 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhh
Confidence 4456666666666666666666666666666666666666666666666666666666655554
No 295
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.74 E-value=0.0031 Score=38.81 Aligned_cols=30 Identities=40% Similarity=0.639 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005594 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399 (689)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 399 (689)
++..+|.++..+|++++|+++|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344455555555555555555555555444
No 296
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.70 E-value=0.003 Score=38.54 Aligned_cols=31 Identities=29% Similarity=0.415 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005594 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (689)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (689)
+++.+|.++...|++++|++.|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4566666666666666666666666666665
No 297
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.70 E-value=0.095 Score=53.04 Aligned_cols=74 Identities=20% Similarity=0.092 Sum_probs=52.2
Q ss_pred HHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHc--------------CC------------CC---HHHHHHHHHH
Q 005594 75 LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL--------------DP------------QN---ACAHTHCGIL 125 (689)
Q Consensus 75 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~p------------~~---~~~~~~la~~ 125 (689)
+..+|-+.+++..++.++..+|+.+.|.+.+++++-. ++ .| ..+++.....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 5678999999999999999999999999999888632 11 11 1233444555
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC
Q 005594 126 YKDEGRLVEAAESYHKALSADPS 148 (689)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~ 148 (689)
+.+.|-+..|.++.+-.+.++|.
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~ 135 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPD 135 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCC
Confidence 66666666666666666666666
No 298
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.69 E-value=0.0082 Score=59.75 Aligned_cols=143 Identities=12% Similarity=0.011 Sum_probs=104.3
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005594 311 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 390 (689)
Q Consensus 311 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 390 (689)
...|+.-.|-.-+..++...|.++......+.+...+|.|+.+...+..+-..-.....+...+-.-...+|++++|...
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 34577777777777778888888887777888888888888888777665554444444555555666778888888888
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHhhhccCCC
Q 005594 391 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 453 (689)
Q Consensus 391 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 453 (689)
.+-.+...-+++++..--+..-..+|-+++|..++++.+.++|....-+.|.+....|..+|+
T Consensus 380 a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 380 AEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceeccCcc
Confidence 877777666667766666666677788888888888888888877777777666666666664
No 299
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.67 Score=44.72 Aligned_cols=205 Identities=14% Similarity=0.039 Sum_probs=129.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCC--------HHHHHhHHHHHHHhCCHHHHHHHHHHHH---HcCCC--C
Q 005594 51 ALSYANILRSRNKFVDALALYEIVLEK--DSGN--------VEAHIGKGICLQMQNMGRLAFDSFSEAV---KLDPQ--N 115 (689)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~--~ 115 (689)
.++.++.....+++++++..+.+++.. .|.+ ......+|..+...|+.++-.......- ..-+. .
T Consensus 7 ~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kaka 86 (411)
T KOG1463|consen 7 LLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKA 86 (411)
T ss_pred HHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHH
Confidence 477888888899999999999999884 2222 2467889999999999887655554432 21111 1
Q ss_pred HHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhh----C--C
Q 005594 116 ACAHTHCGIL-YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI----D--P 188 (689)
Q Consensus 116 ~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~--~ 188 (689)
......+-.. ....+..+.-+..+..+++........ +..-.+-..+...|...++|.+|+......+.. + +
T Consensus 87 aKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRt-FLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~ 165 (411)
T KOG1463|consen 87 AKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRT-FLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKI 165 (411)
T ss_pred HHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 1122222222 222334445555565555543332221 112223456778889999999999988776643 2 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005594 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALER-----PMY--AEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (689)
Q Consensus 189 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 256 (689)
.-.+++..-...|+...+..+|...+..|-... |.. +..-..-|.++....+|..|..+|-++++-..
T Consensus 166 lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~ 240 (411)
T KOG1463|consen 166 LLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFD 240 (411)
T ss_pred ceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHcccc
Confidence 235667777888999999999988887775431 211 12223335666677899999999999987643
No 300
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.64 E-value=0.15 Score=44.05 Aligned_cols=99 Identities=12% Similarity=-0.039 Sum_probs=81.5
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005594 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (689)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (689)
...++.........++.+++..++..+--..|+.++.-..-|..+...|++.+|+..|+.+.+..|..+.+--.++.|+.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 45678888888899999999999999888999999999999999999999999999999998888988988888899998
Q ss_pred HcCCHHHHHHHHHHHHhcCC
Q 005594 128 DEGRLVEAAESYHKALSADP 147 (689)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p 147 (689)
..|+.+= ..+-.++++..+
T Consensus 90 ~~~D~~W-r~~A~evle~~~ 108 (160)
T PF09613_consen 90 ALGDPSW-RRYADEVLESGA 108 (160)
T ss_pred HcCChHH-HHHHHHHHhcCC
Confidence 8887542 222334444443
No 301
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.60 E-value=0.97 Score=45.67 Aligned_cols=134 Identities=11% Similarity=0.004 Sum_probs=89.2
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005594 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (689)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (689)
++....-.......|+.-.|-+-+..++...|.++......+.+...+|+|+.+...+..+-..-.....+...+-....
T Consensus 289 ~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~ 368 (831)
T PRK15180 289 IREITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLH 368 (831)
T ss_pred hhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhh
Confidence 33444445556788999999999999999999999999999999999999999998887665544333444555555566
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCC
Q 005594 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP 188 (689)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 188 (689)
..|++++|....+-.+...-++++. +...+......|-++++...+++.+.++|
T Consensus 369 ~l~r~~~a~s~a~~~l~~eie~~ei-------~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 369 GLARWREALSTAEMMLSNEIEDEEV-------LTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred chhhHHHHHHHHHHHhccccCChhh-------eeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 6777777776666665544444332 22222233344556666666666665544
No 302
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.49 Score=48.79 Aligned_cols=91 Identities=7% Similarity=-0.080 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHH
Q 005594 99 RLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQ 178 (689)
Q Consensus 99 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~ 178 (689)
+...+.+.......|+++......+..+...|+.+.|+..++..++ ..........++.++.++.-+.+|..|-.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~-----~~~kQ~~~l~~fE~aw~~v~~~~~~~aad 324 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP-----IRMKQVKSLMVFERAWLSVGQHQYSRAAD 324 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555555667788887777888888888887777777777665 22233344456677777777777888877
Q ss_pred HHHHHHhhCCCCHHHH
Q 005594 179 KYYEALKIDPHYAPAY 194 (689)
Q Consensus 179 ~~~~al~~~~~~~~~~ 194 (689)
.+....+.+.-.--.|
T Consensus 325 ~~~~L~desdWS~a~Y 340 (546)
T KOG3783|consen 325 SFDLLRDESDWSHAFY 340 (546)
T ss_pred HHHHHHhhhhhhHHHH
Confidence 7777766544433333
No 303
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.72 Score=43.35 Aligned_cols=204 Identities=13% Similarity=0.009 Sum_probs=129.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCC--------CCHHHHHhHHHHHHHhCCHHHHHHHHHH---HHHc--CCCCHHH
Q 005594 52 LSYANILRSRNKFVDALALYEIVLEKDS--------GNVEAHIGKGICLQMQNMGRLAFDSFSE---AVKL--DPQNACA 118 (689)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~---al~~--~p~~~~~ 118 (689)
+++|+.....+++++|+..|.+++.... +...+...++..|...|++..--+.... +... .|.....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 7789999999999999999999987621 1235778899999999987654333322 2221 1222222
Q ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhh------CCCCH
Q 005594 119 HTHCGILY-KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPHYA 191 (689)
Q Consensus 119 ~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~~~~~ 191 (689)
...+...+ .....++.-+..+...++........ ...-.+-..+...++..|+|.+|+......+.. .+.-.
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~-fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li 165 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRK-FLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLI 165 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCcccee
Confidence 22222211 12345555566666555543322211 111223445677889999999999988776643 34456
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005594 192 PAYYNLGVVYSELMQYDTALGCYEKAALE-----RPMYAE--AYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (689)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 256 (689)
.++..-..+|....+..++...+..+-.. .|.... .-..-|...+...+|..|..+|-++++-..
T Consensus 166 ~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft 237 (421)
T COG5159 166 TVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFT 237 (421)
T ss_pred ehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccc
Confidence 67777888999999988888877766443 232222 223335566777899999999999887543
No 304
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.47 E-value=0.0055 Score=37.34 Aligned_cols=30 Identities=17% Similarity=0.112 Sum_probs=13.8
Q ss_pred HHhHHHHHHHhCCHHHHHHHHHHHHHcCCC
Q 005594 85 HIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114 (689)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 114 (689)
++.+|.++...|++++|++.|+++++..|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444444444444444444444444444443
No 305
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.42 E-value=0.24 Score=46.00 Aligned_cols=195 Identities=16% Similarity=0.154 Sum_probs=117.5
Q ss_pred hCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHhHH
Q 005594 95 QNMGRLAFDSFSEAVKLDPQN----ACAHTHCGILYKDEGRLVEAAESYHKALSADP-----SYKPAAECLAIVLTDLGT 165 (689)
Q Consensus 95 ~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~~a~~~~~l~~ 165 (689)
..+.++|+..|++++++.+.. ..++..+..+++++|++++-.+.|.+.+..-. +..+-. ...+-.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKs------IN~IlD 113 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKS------INSILD 113 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHH------HHHHHH
Confidence 348899999999999998865 34777888999999999999999988875311 111100 000101
Q ss_pred HHHHcCChHHHHHHHHHHHhh--CCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------CCHHH
Q 005594 166 SLKLAGNTQDGIQKYYEALKI--DPHYAP----AYYNLGVVYSELMQYDTALGCYEKAALERP------------MYAEA 227 (689)
Q Consensus 166 ~~~~~~~~~~A~~~~~~al~~--~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p------------~~~~~ 227 (689)
.-....+.+--...|+..++. +..+.. .-..+|.+|+..+.|.+-.+.+++.-.... ...++
T Consensus 114 yiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEi 193 (440)
T KOG1464|consen 114 YISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEI 193 (440)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhh
Confidence 111122222223333333322 122222 334689999999998888777777644211 12345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhC
Q 005594 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 296 (689)
Q Consensus 228 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 296 (689)
|..-.++|..+.+..+-...|++++.+...-+.. ..++.+..--|..+.+.|++++|-.-|-++.+..
T Consensus 194 YAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 194 YALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred HhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 5555667777777777778888887765432221 1233444444666777778888877776666543
No 306
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.34 E-value=0.72 Score=48.33 Aligned_cols=27 Identities=22% Similarity=0.006 Sum_probs=15.6
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 005594 48 GKDALSYANILRSRNKFVDALALYEIV 74 (689)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~ 74 (689)
-..|-.+|+..+..=+++-|.+.|.++
T Consensus 585 ~~DW~~LA~~ALeAL~f~~ARkAY~rV 611 (1081)
T KOG1538|consen 585 DTDWRELAMEALEALDFETARKAYIRV 611 (1081)
T ss_pred cchHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 344555666666666666666665554
No 307
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.31 E-value=0.053 Score=42.25 Aligned_cols=67 Identities=18% Similarity=0.120 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHcCCHH
Q 005594 67 ALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN--ACAHTHCGILYKDEGRLV 133 (689)
Q Consensus 67 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~ 133 (689)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..+...+-.++...|.-+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 3566778888899999999999999999999999999999888887754 444455555555555443
No 308
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.30 E-value=1.9 Score=45.76 Aligned_cols=137 Identities=13% Similarity=0.015 Sum_probs=63.1
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHH
Q 005594 88 KGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167 (689)
Q Consensus 88 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~ 167 (689)
.+.+-.--|++++|.+.|-.+-+.+ ....++.+.|++-...+.++..-. ......+..++.++|..+
T Consensus 740 ~aei~~~~g~feeaek~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~-----d~dD~~~e~A~r~ig~~f 806 (1189)
T KOG2041|consen 740 RAEISAFYGEFEEAEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGS-----DDDDEGKEDAFRNIGETF 806 (1189)
T ss_pred hHhHhhhhcchhHhhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCC-----CcchHHHHHHHHHHHHHH
Confidence 3444444566666666664432211 112334445555544444432111 011112334455566666
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005594 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 247 (689)
Q Consensus 168 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 247 (689)
.....+++|.++|.+.-. .-++..+++...++++-..+.+ .-|++...+-.+|..+...|.-++|.+.
T Consensus 807 a~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~LE~la~----~Lpe~s~llp~~a~mf~svGMC~qAV~a 874 (1189)
T KOG2041|consen 807 AEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGELEVLAR----TLPEDSELLPVMADMFTSVGMCDQAVEA 874 (1189)
T ss_pred HHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhHHHHHH----hcCcccchHHHHHHHHHhhchHHHHHHH
Confidence 666666666666654321 1234445555555544333222 2244455555555555555555555554
Q ss_pred HH
Q 005594 248 YE 249 (689)
Q Consensus 248 ~~ 249 (689)
|-
T Consensus 875 ~L 876 (1189)
T KOG2041|consen 875 YL 876 (1189)
T ss_pred HH
Confidence 43
No 309
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.26 E-value=0.013 Score=40.06 Aligned_cols=36 Identities=25% Similarity=0.282 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhH
Q 005594 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (689)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (689)
.++.+|..+.++|+|++|..+.+.+|+++|++..+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 456677777777777777777777777777776654
No 310
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.22 E-value=1.7 Score=44.44 Aligned_cols=261 Identities=8% Similarity=-0.010 Sum_probs=140.6
Q ss_pred hHHHHHHcCChHHHHHHHHHHHhhCCCCHHH--HHHHHHHHHH--cC-CHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Q 005594 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPA--YYNLGVVYSE--LM-QYDTALGCYEKAALE---RPMYAEAYCNMGVI 234 (689)
Q Consensus 163 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~la~~~~~--~g-~~~~A~~~~~~al~~---~p~~~~~~~~la~~ 234 (689)
.........+-+.....|+.+++.-+...-- +...-.-... .| ....-...++++.+. .+..+.-+..+..+
T Consensus 288 ~~~~~~~~~k~s~~~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~ 367 (568)
T KOG2396|consen 288 QAKAVEVGSKESRCCAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLC 367 (568)
T ss_pred hhhchhcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 4444444445555667777777665553322 2222222211 12 344556666666554 45566677777777
Q ss_pred HHHcCCHHHH-HHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 005594 235 YKNRGDLESA-IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM 313 (689)
Q Consensus 235 ~~~~g~~~~A-~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 313 (689)
+.......++ .......+. ++...+.......... +.+++--.......++..+.+...-...... .
T Consensus 368 ~~t~~~~r~~a~~l~~e~f~---~s~k~~~~kl~~~~~s------~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~---~ 435 (568)
T KOG2396|consen 368 LNTLNEAREVAVKLTTELFR---DSGKMWQLKLQVLIES------KSDFQMLFEELFNHLRKQVCSELLISWASAS---E 435 (568)
T ss_pred HhccchHhHHHHHhhHHHhc---chHHHHHHHHHHHHhh------cchhHHHHHHHHHHHHHHhcchhHHHHHHHh---h
Confidence 7666554433 333333333 3333333322222210 1122111111111222222221111111111 2
Q ss_pred CC-HHHHHH--HHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--cCCHHHH
Q 005594 314 LK-FDMAIV--FYELAFHF-NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV--QGKMDAA 387 (689)
Q Consensus 314 g~-~~~A~~--~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A 387 (689)
++ ....+. .+..+... .++....-..+-..+.+.|-+.+|...|.+...+.|-....+..+..+-.. .-+...+
T Consensus 436 ~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~ 515 (568)
T KOG2396|consen 436 GDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANI 515 (568)
T ss_pred ccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHH
Confidence 22 222211 12222222 344455555666777888889999999999888888777766665554332 2247788
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC
Q 005594 388 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI-DPDS 435 (689)
Q Consensus 388 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~ 435 (689)
.++|+.++.....+++.|...-..-..+|..+.+-..|.+|++. +|..
T Consensus 516 r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~~ 564 (568)
T KOG2396|consen 516 REYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAMKTLQGES 564 (568)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHHHhhChhh
Confidence 89999999988889999998888888999999999999998864 4443
No 311
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.21 Score=51.78 Aligned_cols=133 Identities=20% Similarity=0.145 Sum_probs=108.0
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005594 313 MLKFDMAIVFYELAFHFNPHCAEACNN--LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 390 (689)
Q Consensus 313 ~g~~~~A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 390 (689)
.+....++..+...+.+++.+++.+.. +...+...+....+...+..++..+|++..+..+|+......|....+...
T Consensus 44 ~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~ 123 (620)
T COG3914 44 EGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALAD 123 (620)
T ss_pred cCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHH
Confidence 344444677777777788888877544 477777888888999999999999999999999999998888877776666
Q ss_pred HHH-HHHhCCCcHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHH
Q 005594 391 IEK-AIAANPTYAEAYNNL------GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445 (689)
Q Consensus 391 ~~~-al~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 445 (689)
+.. +....|.+.+....+ +.....+|+..++....+++..+.|+++.....++.+
T Consensus 124 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 124 ISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 555 888889887766555 8999999999999999999999999998877776555
No 312
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.18 E-value=0.011 Score=36.82 Aligned_cols=28 Identities=46% Similarity=0.693 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005594 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (689)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (689)
++.+||.+|...|++++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4667888888888888888888885543
No 313
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=1.4 Score=42.66 Aligned_cols=208 Identities=17% Similarity=0.103 Sum_probs=119.5
Q ss_pred HhHHHHHHHhCCHHHHHHHHHHHHHc--CCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 005594 86 IGKGICLQMQNMGRLAFDSFSEAVKL--DPQN--------ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155 (689)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 155 (689)
...+......++.++++..+...+.. .|.+ ......+|..+.+.|+.++-....+..-........+.
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kak-- 85 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAK-- 85 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHH--
Confidence 44555666677788999999988874 2221 24568899999999998876666554432211111110
Q ss_pred HHHHHHHhHHH-HHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC
Q 005594 156 LAIVLTDLGTS-LKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSELMQYDTALGCYEKAALE------RP 222 (689)
Q Consensus 156 ~a~~~~~l~~~-~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p 222 (689)
.+.+...+-.. ....+..+.-+..+...++..... ...-..+..+|...++|.+|+......+.. .+
T Consensus 86 aaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~ 165 (411)
T KOG1463|consen 86 AAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKI 165 (411)
T ss_pred HHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 01111112111 122233444455555554432211 123346788899999999999888777542 22
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhh
Q 005594 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295 (689)
Q Consensus 223 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 295 (689)
.-.+++..-..+|....+..+|...+..+-.....-.-.....+.+-..-|.++....+|..|..+|-++++-
T Consensus 166 lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEg 238 (411)
T KOG1463|consen 166 LLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEG 238 (411)
T ss_pred ceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHcc
Confidence 3355666667788888888888888777654322111111122333344455566667777777777777654
No 314
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.14 E-value=0.11 Score=44.72 Aligned_cols=97 Identities=15% Similarity=0.109 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 005594 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (689)
Q Consensus 336 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (689)
.+..+..+-...++.+++...+...--+.|+.++.-..-|+++...|++.+|+..++.+.+..|..+.+--.++.|+..+
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 44455555666677777777777777778888888888888888888888888888887777777777777777887777
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 005594 416 GSISLAIDAYEQCLKIDP 433 (689)
Q Consensus 416 g~~~~A~~~~~~al~~~p 433 (689)
|+.+ =..+-.++++..+
T Consensus 92 ~D~~-Wr~~A~evle~~~ 108 (160)
T PF09613_consen 92 GDPS-WRRYADEVLESGA 108 (160)
T ss_pred CChH-HHHHHHHHHhcCC
Confidence 7753 2233344555444
No 315
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.12 E-value=0.044 Score=42.70 Aligned_cols=49 Identities=29% Similarity=0.295 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005594 387 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (689)
Q Consensus 387 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (689)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.++++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 3556777888888888888888888888888888888888888888776
No 316
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.11 E-value=0.28 Score=39.41 Aligned_cols=87 Identities=11% Similarity=0.148 Sum_probs=57.9
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCcH---
Q 005594 345 KDRDNLDKAVECYQMALSIKPNF------------SQSLNNLGVVYTVQGKMDAAAEMIEKAIA-------ANPTYA--- 402 (689)
Q Consensus 345 ~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~--- 402 (689)
+..|-|++|...++++++....- .-++..|+..+..+|+|++++...++++. ++.+..
T Consensus 20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklW 99 (144)
T PF12968_consen 20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLW 99 (144)
T ss_dssp HHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhH
Confidence 44567777777777777653221 23566677778888888877776666664 344433
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594 403 -EAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (689)
Q Consensus 403 -~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (689)
.+.++.+..+..+|+.++|+..|+++-++
T Consensus 100 IaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 100 IAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 35567888899999999999999988664
No 317
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.08 E-value=0.029 Score=38.31 Aligned_cols=36 Identities=14% Similarity=-0.022 Sum_probs=17.8
Q ss_pred HHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHH
Q 005594 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAH 119 (689)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 119 (689)
.++.+|..+++.|+|++|..+.+.+++..|+|..+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 344555555555555555555555555555554443
No 318
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.08 E-value=2.2 Score=44.26 Aligned_cols=66 Identities=18% Similarity=0.197 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC----cHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCC
Q 005594 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAA---NPT----YAEAYNNLGVLYRDAGS-ISLAIDAYEQCLKIDPDS 435 (689)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~----~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~ 435 (689)
-+..+|.++..+|+...|..+|+..++. ..+ .|-+++.+|.++..+|. ..++..++.+|-+...++
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 4667899999999999999999988854 111 26799999999999999 999999999999877654
No 319
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=1.3 Score=41.67 Aligned_cols=206 Identities=11% Similarity=-0.002 Sum_probs=117.7
Q ss_pred HhHHHHHHHhCCHHHHHHHHHHHHHcCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH---HhcCCCCHHHHH
Q 005594 86 IGKGICLQMQNMGRLAFDSFSEAVKLDP--------QNACAHTHCGILYKDEGRLVEAAESYHKA---LSADPSYKPAAE 154 (689)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~a---l~~~p~~~~~~~ 154 (689)
..++.-..+.+++++|+..|.+.+...- ....+...++.+|...|++..-.+..... .........
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~--- 83 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKI--- 83 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhH---
Confidence 5567778889999999999999997622 12346788999999999876544433322 211111000
Q ss_pred HHHHHHHHhHH-HHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------C
Q 005594 155 CLAIVLTDLGT-SLKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSELMQYDTALGCYEKAALE------R 221 (689)
Q Consensus 155 ~~a~~~~~l~~-~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~ 221 (689)
..+...+-. .-.....++.-+..+...++..... ...-..+..++++.|+|.+|+......+.. .
T Consensus 84 --~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK 161 (421)
T COG5159 84 --TKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDK 161 (421)
T ss_pred --HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCc
Confidence 111111111 1112234444555554444432111 123345677888999999999888776542 3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhC
Q 005594 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 296 (689)
Q Consensus 222 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 296 (689)
+.....+..-..+|....+..++...+..+-.....-.-.....+..-..-|..+....++..|..+|-++++-.
T Consensus 162 ~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 162 INLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred cceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcc
Confidence 445566777778888888877777776665433211100011123333344555566677777877777776543
No 320
>PRK10941 hypothetical protein; Provisional
Probab=95.98 E-value=0.095 Score=50.29 Aligned_cols=68 Identities=12% Similarity=0.185 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 005594 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405 (689)
Q Consensus 338 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 405 (689)
.++-.++.+.++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|...++..++..|+++.+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 34444455555555555555555555555555555555555555555555555555555555544433
No 321
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.91 E-value=0.45 Score=40.33 Aligned_cols=86 Identities=10% Similarity=-0.042 Sum_probs=72.1
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005594 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (689)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (689)
...++.........++.+++..++..+--..|+.++.-..-|..+...|++.+|+..|+...+..+..+...-.++.|+.
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 34566677777778999999999988888889999999999999999999999999999988888777888888888888
Q ss_pred HcCCHH
Q 005594 128 DEGRLV 133 (689)
Q Consensus 128 ~~g~~~ 133 (689)
.+|+.+
T Consensus 90 al~Dp~ 95 (153)
T TIGR02561 90 AKGDAE 95 (153)
T ss_pred hcCChH
Confidence 888754
No 322
>PRK10941 hypothetical protein; Provisional
Probab=95.88 E-value=0.14 Score=49.23 Aligned_cols=69 Identities=19% Similarity=0.110 Sum_probs=43.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 005594 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (689)
Q Consensus 194 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 262 (689)
..++-.+|.+.++++.|+.+.+.++...|+++.-+...|.+|.++|.+..|...++..++..|+++.+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 344555666666666666666666666666666666666666666666666666666666666655443
No 323
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.81 E-value=0.32 Score=39.03 Aligned_cols=95 Identities=20% Similarity=0.133 Sum_probs=71.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCC------------CHHHHHhHHHHHHHhCCHHHHHHHHHHHHH-------c
Q 005594 51 ALSYANILRSRNKFVDALALYEIVLEKDSG------------NVEAHIGKGICLQMQNMGRLAFDSFSEAVK-------L 111 (689)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~ 111 (689)
.+..|...+..|-|++|...++++++.... +.-++..++.++..+|+|++++....++|. +
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL 91 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL 91 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence 355677788899999999999999886322 235677889999999999998888877775 3
Q ss_pred CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594 112 DPQNA----CAHTHCGILYKDEGRLVEAAESYHKALSA 145 (689)
Q Consensus 112 ~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~ 145 (689)
+.+.. .+-+..+..+...|+.++|+..|+.+-+.
T Consensus 92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 44443 34567788899999999999999988653
No 324
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.80 E-value=0.019 Score=51.70 Aligned_cols=65 Identities=29% Similarity=0.527 Sum_probs=58.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHh
Q 005594 376 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440 (689)
Q Consensus 376 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 440 (689)
....+.++.+.|.+.|.+++++.|+....|+.+|....+.|+++.|.+.|++.++++|++.....
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa 67 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAA 67 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchh
Confidence 34567789999999999999999999999999999999999999999999999999999865443
No 325
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.75 E-value=4.2 Score=44.90 Aligned_cols=318 Identities=12% Similarity=-0.027 Sum_probs=178.5
Q ss_pred HHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005594 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD 162 (689)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~ 162 (689)
...+.-+.-....|++..+.....+ +.-.|- ..+.....+....+.. ....+...++.+|+.+.........+..
T Consensus 34 r~~f~~A~~a~~~g~~~~~~~~~~~-l~d~pL--~~yl~y~~L~~~l~~~--~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~ 108 (644)
T PRK11619 34 RQRYQQIKQAWDNRQMDVVEQLMPT-LKDYPL--YPYLEYRQLTQDLMNQ--PAVQVTNFIRANPTLPPARSLQSRFVNE 108 (644)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHh-ccCCCc--HhHHHHHHHHhccccC--CHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 4567777788888998887665544 333332 2222222222222221 1224555666778777665444443433
Q ss_pred hHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH------------
Q 005594 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCN------------ 230 (689)
Q Consensus 163 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~------------ 230 (689)
++ ..+++..-+..+ ...|.+.......+......|+.++|.....++.......+.....
T Consensus 109 La----~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt 180 (644)
T PRK11619 109 LA----RREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQD 180 (644)
T ss_pred HH----HccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCC
Confidence 33 356776666533 2347788888888899999999988888777775544333333333
Q ss_pred ------HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCC-HHHH
Q 005594 231 ------MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY-ADAM 303 (689)
Q Consensus 231 ------la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~ 303 (689)
........|+...|......+ +... ..++..+..+ ..+...+...+.. ..+.. ....
T Consensus 181 ~~d~w~R~~~al~~~~~~lA~~l~~~l----~~~~---~~~a~a~~al------~~~p~~~~~~~~~---~~~~~~~~~~ 244 (644)
T PRK11619 181 PLAYLERIRLAMKAGNTGLVTYLAKQL----PADY---QTIASALIKL------QNDPNTVETFART---TGPTDFTRQM 244 (644)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhc----ChhH---HHHHHHHHHH------HHCHHHHHHHhhc---cCCChhhHHH
Confidence 333344445554444333322 1110 0111122111 1122222222111 11121 1222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005594 304 YNLGVAYGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 379 (689)
Q Consensus 304 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 379 (689)
..++..-....+.+.|...+.+......-+ ..++..+|.-....+...+|..++..+.... .+.+.......+..
T Consensus 245 ~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al 323 (644)
T PRK11619 245 AAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMAL 323 (644)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHH
Confidence 333444445667788888888765544332 2334455544444433678888887765433 23344444445556
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005594 380 VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (689)
Q Consensus 380 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (689)
..++++.....+...-....+.....+.+|..+..+|+.++|..+|+++..
T Consensus 324 ~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 324 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 889999888888776444445678999999999999999999999999854
No 326
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.75 E-value=0.13 Score=40.99 Aligned_cols=103 Identities=13% Similarity=0.011 Sum_probs=58.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 005594 306 LGVAYGEMLKFDMAIVFYELAFHFNPHCA---EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382 (689)
Q Consensus 306 la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 382 (689)
++.-++..|++-+|+++.+..+..++++. ..+..-|.++.++ +.+.+..+...-+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~l------------A~~ten~d~k~~y---------- 59 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKL------------AKKTENPDVKFRY---------- 59 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHH------------HHhccCchHHHHH----------
Confidence 34556677777777777777776665554 3333344443322 2222211111111
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (689)
Q Consensus 383 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (689)
.-.+++.+.++..+.|..+..++.+|.-+.....|+++..--+++|.+
T Consensus 60 -Ll~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 60 -LLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred -HHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 224667777777777777777777777666666666776666666654
No 327
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.70 E-value=2 Score=45.31 Aligned_cols=49 Identities=8% Similarity=-0.115 Sum_probs=29.4
Q ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHH
Q 005594 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV 109 (689)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 109 (689)
..+...|.+++|...----+. ..-|..+|...+..=+++-|.+.|.++-
T Consensus 564 ~q~Ieag~f~ea~~iaclgVv-----~~DW~~LA~~ALeAL~f~~ARkAY~rVR 612 (1081)
T KOG1538|consen 564 YQYIERGLFKEAYQIACLGVT-----DTDWRELAMEALEALDFETARKAYIRVR 612 (1081)
T ss_pred hhhhhccchhhhhccccccee-----cchHHHHHHHHHhhhhhHHHHHHHHHHh
Confidence 456778888887664221111 1235566666666667777777777653
No 328
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.65 E-value=0.14 Score=47.55 Aligned_cols=92 Identities=25% Similarity=0.238 Sum_probs=48.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHH-------HHHHHHHHHhhCCC------CHHHHH
Q 005594 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD-------GIQKYYEALKIDPH------YAPAYY 195 (689)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~-------A~~~~~~al~~~~~------~~~~~~ 195 (689)
...+++|++.|.-++-...-.......+|.++..++.+|...|+.+. |++.|++++..... ...+.+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 44566666666655532111111111356667777777777777443 33344444333211 134555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Q 005594 196 NLGVVYSELMQYDTALGCYEKAALE 220 (689)
Q Consensus 196 ~la~~~~~~g~~~~A~~~~~~al~~ 220 (689)
.+|.+..+.|++++|.++|.+++..
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 6666666666666666666666654
No 329
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.64 E-value=1.3 Score=38.42 Aligned_cols=132 Identities=15% Similarity=0.112 Sum_probs=95.4
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C--HHHHHHHHHHHHHcCC
Q 005594 310 YGEMLKFDMAIVFYELAFHFNPHC--AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN--F--SQSLNNLGVVYTVQGK 383 (689)
Q Consensus 310 ~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~--~~~~~~la~~~~~~g~ 383 (689)
+...++.++|+..|...-+..-.. ..+.+..+.+..+.|+...|+..|..+-.-.|. - ..+...-+.++...|-
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 456678889998888877664433 445677888999999999999999987665432 1 2245566777888898
Q ss_pred HHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhH
Q 005594 384 MDAAAEMIEKAI-AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (689)
Q Consensus 384 ~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (689)
|++-....+..- ..+|-...+...||..-.+.|++.+|...|.+... +...+....++
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqR 206 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQR 206 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHH
Confidence 888766655432 22455567888899999999999999999999887 44444444443
No 330
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.63 E-value=0.019 Score=34.38 Aligned_cols=31 Identities=39% Similarity=0.673 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005594 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (689)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (689)
++..+|.++..+|++++|..+|+++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4566777777777777777777777776664
No 331
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.48 E-value=1.5 Score=38.08 Aligned_cols=29 Identities=17% Similarity=0.127 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005594 191 APAYYNLGVVYSELMQYDTALGCYEKAAL 219 (689)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 219 (689)
..+.-.||..-++.|++.+|.+.|..+..
T Consensus 167 ~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 167 HSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 33444455555555555555555554433
No 332
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.27 E-value=0.19 Score=41.47 Aligned_cols=74 Identities=20% Similarity=0.195 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH-hCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHh
Q 005594 367 FSQSLNNLGVVYTVQG---KMDAAAEMIEKAIA-ANPTY-AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440 (689)
Q Consensus 367 ~~~~~~~la~~~~~~g---~~~~A~~~~~~al~-~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 440 (689)
..+..+++++++.... +..+.+.+++..++ -.|+. -+..+.|+..+.+.|+|++++.+.+..++..|+|..+..
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 3557788888887754 46678888888886 44433 567888999999999999999999999999999887643
No 333
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=95.12 E-value=0.18 Score=57.33 Aligned_cols=162 Identities=20% Similarity=0.190 Sum_probs=124.1
Q ss_pred HHhhhhhhhcCCHHHHHH------HHH-HHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCCH
Q 005594 270 TDLGTKVKLEGDINQGVA------YYK-KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--------NPHCA 334 (689)
Q Consensus 270 ~~l~~~~~~~~~~~~A~~------~~~-~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~ 334 (689)
...|......+.+.++.+ ++. ..-.+.|.....+..++.++...+++++|+..-.++.-+ .|+..
T Consensus 936 ~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~ 1015 (1236)
T KOG1839|consen 936 PEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTK 1015 (1236)
T ss_pred hhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHH
Confidence 334444445666776666 444 223456778889999999999999999999988877654 35567
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------
Q 005594 335 EACNNLGVIYKDRDNLDKAVECYQMALSI--------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP------- 399 (689)
Q Consensus 335 ~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------- 399 (689)
..+.+++...+..++...|+..+.++..+ .|.-.....+++.++...++++.|+.+++.|+..+.
T Consensus 1016 ~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~ 1095 (1236)
T KOG1839|consen 1016 LAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKE 1095 (1236)
T ss_pred HHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccc
Confidence 78889999999999999999999988765 355555778899999999999999999999998632
Q ss_pred -CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594 400 -TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (689)
Q Consensus 400 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (689)
.....+..+++.+..++++..|....+....+
T Consensus 1096 l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1096 LETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred hhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 23456777888888888888888777766554
No 334
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.07 E-value=0.23 Score=46.09 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594 335 EACNNLGVIYKDRDNLDKAVECYQMALSI 363 (689)
Q Consensus 335 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 363 (689)
.+.+.+|.+..+.|++++|.++|.+++..
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 45555666666666666666666666554
No 335
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.89 E-value=0.44 Score=40.36 Aligned_cols=77 Identities=13% Similarity=0.124 Sum_probs=50.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 005594 342 VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 418 (689)
Q Consensus 342 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 418 (689)
..-...++.+++...+...--+.|+.++.-..-|+++...|++.+|+..++...+..+..+-..-.++.|+..+|+.
T Consensus 18 ~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 18 MYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 33344566666666666666666777666666677777777777777777766666666666666666666666664
No 336
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.82 E-value=0.15 Score=51.85 Aligned_cols=103 Identities=15% Similarity=0.064 Sum_probs=88.6
Q ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHh---CCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 005594 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQ---NMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (689)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (689)
..+.....|.-.+..+....|+..|.+++...|.....+...+.++++. |+.-.|+.....+++++|....+++.++
T Consensus 373 ~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la 452 (758)
T KOG1310|consen 373 NIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLA 452 (758)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHH
Confidence 3455555666666667789999999999999999999999999988876 4667788889999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005594 124 ILYKDEGRLVEAAESYHKALSADPSY 149 (689)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~ 149 (689)
.++...+++.+|+.+...+....|.+
T Consensus 453 ~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 453 RALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 99999999999999998888888854
No 337
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.77 E-value=0.053 Score=48.97 Aligned_cols=61 Identities=23% Similarity=0.317 Sum_probs=43.7
Q ss_pred HHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 005594 91 CLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151 (689)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 151 (689)
...+.++.+.|.+.|.+++.+.|.....|+.+|....+.|+++.|.+.|++.++++|.+..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 3445667777777777777777777777777777777777777777777777777776543
No 338
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.71 E-value=0.099 Score=53.14 Aligned_cols=88 Identities=17% Similarity=0.100 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 005594 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV---QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 424 (689)
Q Consensus 348 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 424 (689)
+....|+..|.+++...|.....+.+.+.++.+ .|+.-.|+.....+++++|....+++.|+.++..++++.+|+++
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~ 467 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSC 467 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhh
Confidence 345566677777777777777777776666665 34555666666667777777777777777777777777777777
Q ss_pred HHHHHhcCCCC
Q 005594 425 YEQCLKIDPDS 435 (689)
Q Consensus 425 ~~~al~~~p~~ 435 (689)
...+....|.+
T Consensus 468 ~~alq~~~Ptd 478 (758)
T KOG1310|consen 468 HWALQMSFPTD 478 (758)
T ss_pred HHHHhhcCchh
Confidence 76666666644
No 339
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.69 E-value=0.6 Score=41.96 Aligned_cols=102 Identities=11% Similarity=-0.109 Sum_probs=72.0
Q ss_pred HHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005594 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159 (689)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~ 159 (689)
.++..+|..|.+.|+.++|++.|.++...... ..+.++.+..+....+++.....+..++-..-.. ...+.....+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~-~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK-GGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-cchHHHHHHH
Confidence 57889999999999999999999998775433 2456778888888999999999998888665333 1113333333
Q ss_pred HHHhHHHHHHcCChHHHHHHHHHHHh
Q 005594 160 LTDLGTSLKLAGNTQDGIQKYYEALK 185 (689)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~al~ 185 (689)
-...|..+...++|.+|.+.|-.+..
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCc
Confidence 44455555666777777776655543
No 340
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.66 E-value=0.062 Score=31.92 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=12.6
Q ss_pred HHhHHHHHHHhCCHHHHHHHHHHHHHcCC
Q 005594 85 HIGKGICLQMQNMGRLAFDSFSEAVKLDP 113 (689)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 113 (689)
+..+|.++...+++++|+..++++++.+|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 33444444444444444444444444333
No 341
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=94.65 E-value=6.2 Score=40.67 Aligned_cols=81 Identities=12% Similarity=-0.016 Sum_probs=63.2
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005594 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250 (689)
Q Consensus 171 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 250 (689)
-++.-....+.+++... ++-.+++.++.+|.+. ..++-....++.++.+-++...-..++..|.+ ++.+++..+|.+
T Consensus 80 ~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~K 156 (711)
T COG1747 80 HKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGK 156 (711)
T ss_pred hHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHH
Confidence 34444556667777654 4567888999999888 66777888999999888888888888888877 888999999999
Q ss_pred HHhc
Q 005594 251 CLAV 254 (689)
Q Consensus 251 al~~ 254 (689)
++..
T Consensus 157 a~yr 160 (711)
T COG1747 157 ALYR 160 (711)
T ss_pred HHHH
Confidence 8764
No 342
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.60 E-value=2.4 Score=44.64 Aligned_cols=99 Identities=20% Similarity=0.130 Sum_probs=85.9
Q ss_pred HHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005594 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229 (689)
Q Consensus 156 ~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 229 (689)
+-.++.+.+.-.++..+|..+++.|...+..-|.+ +.....++.||..+.+.+.|.++++.|-+.+|.++-...
T Consensus 353 iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~ 432 (872)
T KOG4814|consen 353 IHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQL 432 (872)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHH
Confidence 33456677788888999999999999998876654 556788999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594 230 NMGVIYKNRGDLESAIACYERCLAV 254 (689)
Q Consensus 230 ~la~~~~~~g~~~~A~~~~~~al~~ 254 (689)
.+..+....+.-++|+.+..+....
T Consensus 433 ~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 433 LMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhh
Confidence 9999999999999999998887655
No 343
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=94.50 E-value=0.43 Score=54.49 Aligned_cols=137 Identities=16% Similarity=0.068 Sum_probs=95.1
Q ss_pred CchhhHHHHHHHHHhCCCHHHHHH------HHHHH-HHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHc-------
Q 005594 46 FEGKDALSYANILRSRNKFVDALA------LYEIV-LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL------- 111 (689)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~------~~~~~-l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------- 111 (689)
.+++...+.++.....|.+.+|.+ ++... -...|.....+..++..+...+++++|+..-.++.-+
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 456778889999999999998888 55532 2347788899999999999999999999988877643
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHh
Q 005594 112 -DPQNACAHTHCGILYKDEGRLVEAAESYHKALSA-----DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185 (689)
Q Consensus 112 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~ 185 (689)
.|+....+..++...+..++...|...+.++..+ .|..+.. +.+..+++.++...++++.|+++.+.+++
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~----a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPT----ALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCch----hhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 2445667778888888888888888877777653 2222221 22234444444455556666666655554
Q ss_pred h
Q 005594 186 I 186 (689)
Q Consensus 186 ~ 186 (689)
.
T Consensus 1086 ~ 1086 (1236)
T KOG1839|consen 1086 K 1086 (1236)
T ss_pred H
Confidence 3
No 344
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.38 E-value=1 Score=37.29 Aligned_cols=73 Identities=12% Similarity=0.149 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHh-cCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 005594 334 AEACNNLGVIYKDRD---NLDKAVECYQMALS-IKPNF-SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 406 (689)
Q Consensus 334 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~-~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 406 (689)
....+++++++.... +..+.+.+++..++ -.|.. -+..+.|+..+++.++|++++.+.+..++..|++.++..
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 344555555555443 34455666666664 33322 345666666666777777777777777776666655543
No 345
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.36 E-value=3.4 Score=41.41 Aligned_cols=173 Identities=14% Similarity=0.112 Sum_probs=112.6
Q ss_pred HHHHHhCCCH-HHHHHHHHHHHHhCCCCHHHHHhHHHHHHH------------hCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 005594 55 ANILRSRNKF-VDALALYEIVLEKDSGNVEAHIGKGICLQM------------QNMGRLAFDSFSEAVKLDPQNACAHTH 121 (689)
Q Consensus 55 a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~------------~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (689)
-......|.| .++++.=.+.++.+|+....|...-.++.. +.-.++-+.+...+++.+|++..+|+.
T Consensus 35 i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~h 114 (421)
T KOG0529|consen 35 IQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHH 114 (421)
T ss_pred HHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHH
Confidence 3334445555 567778888888899877666654444322 224566677888888899999999999
Q ss_pred HHHHHHHcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 005594 122 CGILYKDEGR--LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGV 199 (689)
Q Consensus 122 la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 199 (689)
+..++.+.+. +..-++..+++++.+|.+..++...-.+ .+..........+-+++..+++..++.+..+|.....
T Consensus 115 R~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV---~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~ 191 (421)
T KOG0529|consen 115 RKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFV---VEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSL 191 (421)
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHH---HHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHH
Confidence 9988887663 5778888899999998887776532211 1112222233566677788888888888888887766
Q ss_pred HHHH------cCC------HHHHHHHHHHHHHhCCCCHHHHHH
Q 005594 200 VYSE------LMQ------YDTALGCYEKAALERPMYAEAYCN 230 (689)
Q Consensus 200 ~~~~------~g~------~~~A~~~~~~al~~~p~~~~~~~~ 230 (689)
++.. .|+ ...-++....++-.+|++..+|+.
T Consensus 192 lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 192 LLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred HHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 6552 221 222334444555567777666655
No 346
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.28 E-value=0.67 Score=41.63 Aligned_cols=65 Identities=17% Similarity=0.097 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005594 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (689)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 255 (689)
..++..+|..|.+.|+.++|++.|.++.+.... ..+.++.+..+....+++.....+..++-...
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 356677888888888888888888887665432 24566777777778888888888777776543
No 347
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.97 E-value=6.1 Score=41.37 Aligned_cols=104 Identities=17% Similarity=0.084 Sum_probs=74.2
Q ss_pred hCCCHHHHHHHHHHHHHh------------CCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHc----------------
Q 005594 60 SRNKFVDALALYEIVLEK------------DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL---------------- 111 (689)
Q Consensus 60 ~~g~~~~A~~~~~~~l~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------------- 111 (689)
....|++|...|.-+... .|-+.+.+..++.+...+|+.+-|....++++=.
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 345677888877776654 4667889999999999999999888888887631
Q ss_pred -----CCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHh
Q 005594 112 -----DPQNAC---AHTHCGILYKDEGRLVEAAESYHKALSADPS-YKPAAECLAIVLTDL 163 (689)
Q Consensus 112 -----~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~l 163 (689)
.|.|-. +++..-..+.+.|-+..|.++.+-.++++|. ++-....+...+...
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALr 390 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALR 390 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHH
Confidence 223332 2333445566789999999999999999998 665544444434333
No 348
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.75 E-value=0.15 Score=32.85 Aligned_cols=29 Identities=38% Similarity=0.554 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (689)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (689)
.++.++|.+|..+|++++|..++++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45677778888888888888887777764
No 349
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=93.62 E-value=17 Score=41.82 Aligned_cols=135 Identities=14% Similarity=0.067 Sum_probs=88.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH---HHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 005594 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAEC---LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGV 199 (689)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~---~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 199 (689)
-.++...+.|++|+..|++.....|...+.+.. .+..+...+........+.+|+..|++.- -.|.-+--|...|.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 560 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKAL 560 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHH
Confidence 356777889999999999999999886655433 22223332222222235777888877643 35666777889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCc
Q 005594 200 VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR-----GDLESAIACYERCLAVSPNF 258 (689)
Q Consensus 200 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~ 258 (689)
+|..+|++++-++++.-+++..|..+..-...-.+-.++ .+...|....--++...|..
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEK 624 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 999999999999999999999888765433332222221 12234444444555555543
No 350
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=93.56 E-value=7.4 Score=37.52 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhc
Q 005594 221 RPMYAEAYCNMGV-IYKNRGDLESAIACYERCLAV 254 (689)
Q Consensus 221 ~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~ 254 (689)
.|...+.+...+. .|...++...|...+....+.
T Consensus 136 ~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 136 YPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp SS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4444555554443 466778888888877666654
No 351
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.37 E-value=4.6 Score=42.23 Aligned_cols=156 Identities=10% Similarity=0.045 Sum_probs=97.8
Q ss_pred cCChHHHHHHHHHHHhh------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------
Q 005594 170 AGNTQDGIQKYYEALKI------------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE----------------- 220 (689)
Q Consensus 170 ~~~~~~A~~~~~~al~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------------- 220 (689)
...|++|...|.-+... .|-+.+.+..++.+...+|+.+-|....++++=.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 35577888877776654 5667889999999999999999988888887521
Q ss_pred ----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHH
Q 005594 221 ----RPMYA---EAYCNMGVIYKNRGDLESAIACYERCLAVSPN-FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292 (689)
Q Consensus 221 ----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 292 (689)
.|.+- .+++..-..+.+.|-+..|.++.+-.++++|. ++.....+...|...+ .+|+=-++.++..
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALra------reYqwiI~~~~~~ 404 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRA------REYQWIIELSNEP 404 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHH------HhHHHHHHHHHHH
Confidence 12222 23344455667889999999999999999998 7765555544444433 3444444444433
Q ss_pred H-----hhCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCC
Q 005594 293 L-----YYNWHYADAMYNLGVAYGEMLK---FDMAIVFYELAFHFNPH 332 (689)
Q Consensus 293 l-----~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~ 332 (689)
- ...|+.+ .-..++..|..... -..|...+.+|+...|.
T Consensus 405 e~~n~l~~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 405 ENMNKLSQLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HhhccHhhcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 2 1223221 22233444444333 44566666666666553
No 352
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.37 E-value=0.76 Score=34.08 Aligned_cols=62 Identities=15% Similarity=-0.026 Sum_probs=43.8
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHh---HHHHHHHhCCHHHHHHHHHHHH
Q 005594 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIG---KGICLQMQNMGRLAFDSFSEAV 109 (689)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~---la~~~~~~g~~~~A~~~~~~al 109 (689)
+...++.|..++.+.+.++|+..++++++..++..+.+.. +..++...|+|.+.+++..+-+
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888888888887776654444 4455667777777776654443
No 353
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.30 E-value=8.1 Score=38.86 Aligned_cols=162 Identities=13% Similarity=0.126 Sum_probs=116.4
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH------------hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 005594 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYG------------EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348 (689)
Q Consensus 281 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~------------~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 348 (689)
..+++++.-.+.+..+|+...+|...-.++. +..-.++-+.+...+++.+|++..+|+....++.+.+
T Consensus 44 yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p 123 (421)
T KOG0529|consen 44 YDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNP 123 (421)
T ss_pred cchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCC
Confidence 3456677777777778877665544322221 2224566777888899999999999999999998776
Q ss_pred --CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH------cC
Q 005594 349 --NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG----KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD------AG 416 (689)
Q Consensus 349 --~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~------~g 416 (689)
++..=++..+++++.+|.+..+|...=.+..... ...+=+++..+++..++.+..+|.....++.. .|
T Consensus 124 ~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g 203 (421)
T KOG0529|consen 124 HSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADG 203 (421)
T ss_pred CchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccC
Confidence 4688889999999999998887766555554432 35667888889999899998888888777662 23
Q ss_pred C------HHHHHHHHHHHHhcCCCChhhHhhH
Q 005594 417 S------ISLAIDAYEQCLKIDPDSRNAGQNR 442 (689)
Q Consensus 417 ~------~~~A~~~~~~al~~~p~~~~~~~~~ 442 (689)
+ ...-++.-..|+-.+|++..++...
T Consensus 204 ~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~ 235 (421)
T KOG0529|consen 204 NFMPKELLQSELEMVHSAIFTDPEDQSCWFYH 235 (421)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCccccceeeeh
Confidence 1 2334556667777899998887653
No 354
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.03 E-value=0.25 Score=31.75 Aligned_cols=29 Identities=38% Similarity=0.657 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005594 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (689)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (689)
.++.++|.+|..+|++++|+.++++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45677777777777777777777777665
No 355
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=92.65 E-value=10 Score=36.70 Aligned_cols=145 Identities=12% Similarity=0.015 Sum_probs=86.9
Q ss_pred HhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHH
Q 005594 86 IGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165 (689)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~ 165 (689)
+.+-....+..+..+-++....+++++|....++..++.-- ..-..+|.+.++++++..... ++...
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~-----------yr~sq 254 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETI-----------YRQSQ 254 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHH-----------HhhHH
Confidence 34445556667778888888899999999998888877543 334678888888888754321 11111
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHH
Q 005594 166 SLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY--AEAYCNMGVIYKNRGDLE 242 (689)
Q Consensus 166 ~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~ 242 (689)
.....|...+|. .+.+.+ ...+...++.|..++|+..+|++.++...+..|-. ..++-++-..+....-|.
T Consensus 255 q~qh~~~~~da~------~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYA 328 (556)
T KOG3807|consen 255 QCQHQSPQHEAQ------LRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYA 328 (556)
T ss_pred HHhhhccchhhh------hhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222222221 111111 12334578899999999999999999988877632 233444555555554444
Q ss_pred HHHHHHH
Q 005594 243 SAIACYE 249 (689)
Q Consensus 243 ~A~~~~~ 249 (689)
+....+-
T Consensus 329 DvqavLa 335 (556)
T KOG3807|consen 329 DVQAVLA 335 (556)
T ss_pred HHHHHHH
Confidence 4444333
No 356
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=92.65 E-value=0.32 Score=46.15 Aligned_cols=79 Identities=13% Similarity=0.035 Sum_probs=63.0
Q ss_pred ccCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHh-HHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 005594 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIG-KGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (689)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (689)
...++..|...+....+.|-|.+--.+|.++++.+|.+++.|.. .+.-+...++.+.+...|.++++.+|+++..|...
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 34567778888888888888888888888888888888888877 55557777888888888888888888888777544
No 357
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=92.58 E-value=11 Score=36.64 Aligned_cols=59 Identities=12% Similarity=-0.138 Sum_probs=45.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHc
Q 005594 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111 (689)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 111 (689)
-.+.-+...+..+..+-++....+++++|+-+.++..++.-- ..-..+|.+.|+++++.
T Consensus 187 e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 187 EDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKA 245 (556)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHH
Confidence 344555566777888889999999999999999999887653 33466788888888764
No 358
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=92.41 E-value=0.25 Score=46.84 Aligned_cols=86 Identities=6% Similarity=-0.020 Sum_probs=52.8
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 005594 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNN-LGVVYTVQGKMDAAAEMIEKAIAANPTY 401 (689)
Q Consensus 323 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~ 401 (689)
|.++....++++..|...+....+.|.+.+--..|.++++.+|.+.+.|.. .+.-+...++.+.+...+.+++.++|++
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 334444456666666666666666666666666666666666666666654 3334555666666666666666666666
Q ss_pred HHHHHHH
Q 005594 402 AEAYNNL 408 (689)
Q Consensus 402 ~~~~~~l 408 (689)
+..|...
T Consensus 176 p~iw~ey 182 (435)
T COG5191 176 PRIWIEY 182 (435)
T ss_pred chHHHHH
Confidence 6655443
No 359
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.88 E-value=4.2 Score=39.15 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=52.5
Q ss_pred HHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSA 145 (689)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 145 (689)
..++..++..+...|+++.++..+++.+..+|.+-..|..+-..|...|+...|+..|++.-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4566777888888888888888888888888888888888888888888888888888877653
No 360
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=91.82 E-value=24 Score=38.99 Aligned_cols=380 Identities=13% Similarity=0.010 Sum_probs=207.0
Q ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHH---HhCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 005594 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQ---MQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (689)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (689)
+....+.+-..+...|++++-...-.++.+..|..+..|..-..-.. ..++-.++...|++++.- -+++..|...+
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~d-y~~v~iw~e~~ 190 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGD-YNSVPIWEEVV 190 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcc-cccchHHHHHH
Confidence 34455667778888898888777777777778888777766554433 336778888999999863 34444554444
Q ss_pred HHH-------HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHH---
Q 005594 124 ILY-------KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA--- 193 (689)
Q Consensus 124 ~~~-------~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--- 193 (689)
... ...++++.-...|.+++..-.....--..+..++...-..+...-..++-+.++...+... .+.++
T Consensus 191 ~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D~~~~~~ 269 (881)
T KOG0128|consen 191 NYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-LDEDTRGW 269 (881)
T ss_pred HHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-chhhhhHH
Confidence 433 4456788888899999875443332222334445556666666666677777777777654 22111
Q ss_pred -HHHHH---HHHHHcCCHHHHHHHHHHH-------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 005594 194 -YYNLG---VVYSELMQYDTALGCYEKA-------ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (689)
Q Consensus 194 -~~~la---~~~~~~g~~~~A~~~~~~a-------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 262 (689)
+.... .......+++.|.+-+.+. +...+.....|..+.......|+.-.-...+++++...+.+...|
T Consensus 270 ~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~w 349 (881)
T KOG0128|consen 270 DLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALW 349 (881)
T ss_pred HHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHH
Confidence 11111 1112334455555443333 333444445566666666677777777777777776666555544
Q ss_pred hhHHHHHHH---hhh----hhh-hcCCHHHHHHHHHHHH---hhCCCC-----------HH---HHHHHHHHH-HhcC--
Q 005594 263 NNMAIALTD---LGT----KVK-LEGDINQGVAYYKKAL---YYNWHY-----------AD---AMYNLGVAY-GEML-- 314 (689)
Q Consensus 263 ~~~~~~~~~---l~~----~~~-~~~~~~~A~~~~~~al---~~~~~~-----------~~---~~~~la~~~-~~~g-- 314 (689)
...+..+.. +.. .+. ..+...-...++++++ +.+... .. .+.+....+ ...+
T Consensus 350 i~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~ 429 (881)
T KOG0128|consen 350 IGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNI 429 (881)
T ss_pred hhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 443322110 000 000 0011111111111111 111000 00 011111111 1111
Q ss_pred ----C-------HHHHHHHHHHHHhh-CCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHH
Q 005594 315 ----K-------FDMAIVFYELAFHF-NPHCAEACNNLGVIYK-DRDNLDKAVECYQMALSIKPNFSQ-SLNNLGVVYTV 380 (689)
Q Consensus 315 ----~-------~~~A~~~~~~al~~-~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~ 380 (689)
+ |..|...+...... -......+...|.+.. .+++.+.+..+....+........ .|.....+-..
T Consensus 430 ~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~ 509 (881)
T KOG0128|consen 430 IDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLERE 509 (881)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHH
Confidence 2 33344444333332 1122344555555544 456788888888877776555544 78888888888
Q ss_pred cCCHHHHHHHHHHHHHh--CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594 381 QGKMDAAAEMIEKAIAA--NPTY-AEAYNNLGVLYRDAGSISLAIDAYEQC 428 (689)
Q Consensus 381 ~g~~~~A~~~~~~al~~--~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (689)
.|+...+..++++++.. +|++ ..++..+-......|.++.....-.+.
T Consensus 510 ~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~~ 560 (881)
T KOG0128|consen 510 YGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCPEKV 560 (881)
T ss_pred hCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhHHhh
Confidence 89999999988888765 3432 345555666666777777766555443
No 361
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.82 E-value=9.2 Score=40.05 Aligned_cols=164 Identities=15% Similarity=0.037 Sum_probs=93.1
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHH--HHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005594 50 DALSYANILRSRNKFVDALALYE--IVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (689)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~--~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (689)
.-.-.-+....+|+++++.++.+ +.+..-| ..-....+..+.++|.++.|+...+ ++...+ .+..
T Consensus 263 ~~~~~fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rF---eLAl 329 (443)
T PF04053_consen 263 LSELEFKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT--------DPDHRF---ELAL 329 (443)
T ss_dssp HHHHHHHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHH---HHHH
T ss_pred HHHHHHHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHh---HHHH
Confidence 33445556678899999888775 2222222 3445666777778888888776542 344433 3456
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 005594 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207 (689)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 207 (689)
+.|+++.|.+..++. ++.. .|..+|.....+|+++-|.++|+++- -+..|..+|...|+.
T Consensus 330 ~lg~L~~A~~~a~~~-----~~~~-------~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~ 389 (443)
T PF04053_consen 330 QLGNLDIALEIAKEL-----DDPE-------KWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDR 389 (443)
T ss_dssp HCT-HHHHHHHCCCC-----STHH-------HHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-H
T ss_pred hcCCHHHHHHHHHhc-----CcHH-------HHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCH
Confidence 788888887765432 2233 38888888889999999999888753 244566677778887
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594 208 DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 251 (689)
Q Consensus 208 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 251 (689)
+.-.+..+.+...... ...-.++...|+.++.++.+.+.
T Consensus 390 ~~L~kl~~~a~~~~~~-----n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 390 EKLSKLAKIAEERGDI-----NIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHHHHTT-H-----HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCH-----HHHHHHHHHcCCHHHHHHHHHHc
Confidence 6666666555443321 12223445557777766666553
No 362
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.50 E-value=28 Score=39.47 Aligned_cols=113 Identities=10% Similarity=-0.010 Sum_probs=66.4
Q ss_pred HHHHhHHHHHHcCChHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHH------
Q 005594 159 VLTDLGTSLKLAGNTQDGIQKYYEALKID----PHYAPAYYNLGVVYSELMQY--DTALGCYEKAALERPMYAE------ 226 (689)
Q Consensus 159 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~------ 226 (689)
-+..|+..|...|+.++|++.+.+..... +.....+-..-..+...+.- +-..++..-.++.+|....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 36678888999999999999999888733 33344444444445555544 5555555555555553211
Q ss_pred -------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHhhHHHHHHH
Q 005594 227 -------AYCNMGVIYKNRGDLESAIACYERCLAVSPN-FEIAKNNMAIALTD 271 (689)
Q Consensus 227 -------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~ 271 (689)
.-.....-+......+-++.+++.++..... ....+..+...|..
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 0011122345667778888888888877655 33333444444433
No 363
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.42 E-value=5.4 Score=36.07 Aligned_cols=73 Identities=15% Similarity=0.197 Sum_probs=56.9
Q ss_pred ChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHH
Q 005594 172 NTQDGIQKYYEALKI-DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM----YAEAYCNMGVIYKNRGDLESAI 245 (689)
Q Consensus 172 ~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~ 245 (689)
.-++|...|.++-.. .-++++..+.+|..|. ..+.++++..+.++++..+. +++.+..|+.++..+|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 446777777665433 2246888888888776 67899999999999987543 5899999999999999998874
No 364
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=91.41 E-value=14 Score=35.61 Aligned_cols=65 Identities=18% Similarity=0.004 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHH----------------HhhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHH
Q 005594 298 HYADAMYNLGVAYGEMLKFDMAIVFYELA----------------FHFNPHCAEACNNLGV-IYKDRDNLDKAVECYQMA 360 (689)
Q Consensus 298 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a----------------l~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~a 360 (689)
.+++.+..+|..+.+.|++.+|..+|-.. .+-.|.....+...+. .|...++...|...+...
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f 167 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTF 167 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 36778888888888888888887766321 1113444444444333 344556666666555444
Q ss_pred Hh
Q 005594 361 LS 362 (689)
Q Consensus 361 l~ 362 (689)
++
T Consensus 168 ~~ 169 (260)
T PF04190_consen 168 TS 169 (260)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 365
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=91.18 E-value=6.5 Score=40.36 Aligned_cols=64 Identities=19% Similarity=0.121 Sum_probs=48.2
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHH--HHHhH--HHHHHHhCCHHHHHHHHHHHHHc
Q 005594 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVE--AHIGK--GICLQMQNMGRLAFDSFSEAVKL 111 (689)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~l--a~~~~~~g~~~~A~~~~~~al~~ 111 (689)
+...+..+..++..++|..|.++++.+...-|.+.. .+..+ |.-+....++++|.+.+++.+..
T Consensus 131 ~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 131 GDREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345677899999999999999999999886344333 44444 34456778899999999988765
No 366
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=91.17 E-value=2.1 Score=40.55 Aligned_cols=68 Identities=22% Similarity=0.214 Sum_probs=46.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 005594 195 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (689)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 262 (689)
.++=..+...++++.|..+.++.+..+|.++.-+.-.|.+|.++|.+.-|++.++..++..|+.+.+.
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~ 252 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE 252 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence 34445566667777777777777777777777777777777777777777777777777777665443
No 367
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=90.96 E-value=0.84 Score=28.29 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHH--HHHHHhcCCC
Q 005594 404 AYNNLGVLYRDAGSISLAIDA--YEQCLKIDPD 434 (689)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~--~~~al~~~p~ 434 (689)
.++.+|..+..+|++++|++. |+-+..++|.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 455566666666666666666 3355555554
No 368
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=90.84 E-value=15 Score=34.83 Aligned_cols=63 Identities=10% Similarity=0.169 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHH-HhCCHHHHHHHHHHHHHc
Q 005594 49 KDALSYANILRSRNKFVDALALYEIVLEKDSG-NVEAHIGKGICLQ-MQNMGRLAFDSFSEAVKL 111 (689)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 111 (689)
+.++.+|+...+.|+|++.+..+++++..++. +.+-...++.+|- ..|....+...+......
T Consensus 2 e~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~ 66 (236)
T PF00244_consen 2 EELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQK 66 (236)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhh
Confidence 45788899999999999999999999998775 4455666666653 234555555555554443
No 369
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.80 E-value=2.6 Score=33.22 Aligned_cols=61 Identities=20% Similarity=0.279 Sum_probs=37.3
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhh
Q 005594 126 YKDEGRLVEAAESYHKALSADPSYKPAA--ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (689)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 186 (689)
..+.|++.+|++.+.+.+.......... ..+...+..++.+....|++++|+..+++++++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3567788888777777766543322211 123334556666677777777777777777665
No 370
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=90.70 E-value=2.7 Score=41.99 Aligned_cols=91 Identities=20% Similarity=0.174 Sum_probs=73.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhC--------CC-----CH-----HHHHhHHHHHHHhCCHHHHHHHHHHHHHcCC
Q 005594 52 LSYANILRSRNKFVDALALYEIVLEKD--------SG-----NV-----EAHIGKGICLQMQNMGRLAFDSFSEAVKLDP 113 (689)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~--------p~-----~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 113 (689)
+.-|...+++++|..|.--|..+|+.. |. +. .+--.+..||+.+++.+-|+....+.+.++|
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP 259 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP 259 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence 445667888888888888888888752 11 11 2344688999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594 114 QNACAHTHCGILYKDEGRLVEAAESYHKA 142 (689)
Q Consensus 114 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a 142 (689)
....-+...|.++..+.+|.+|...+--+
T Consensus 260 ~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 260 SYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987765543
No 371
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=90.53 E-value=1.2 Score=42.27 Aligned_cols=68 Identities=21% Similarity=0.304 Sum_probs=48.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 005594 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (689)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (689)
..++-..+...++++.|..+.++.+.++|+++.-+.-.|.+|.++|-+.-|++.++..++..|+++.+
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a 251 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence 34445556667777777777777777777777777777777777777777777777777777776654
No 372
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=90.00 E-value=3.6 Score=41.19 Aligned_cols=96 Identities=16% Similarity=0.143 Sum_probs=66.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCC-----------CCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 005594 122 CGILYKDEGRLVEAAESYHKALSADP-----------SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190 (689)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p-----------~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 190 (689)
-|...+++++|..|..-|..++++.. ...+....-..+-..+..||...++.+-|+....+.+.++|..
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~ 261 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY 261 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence 34566777777777777777776522 2222222333445667788888888888888888888888888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594 191 APAYYNLGVVYSELMQYDTALGCYEKA 217 (689)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~a 217 (689)
..-+...|.++..+.+|.+|.+.+--+
T Consensus 262 frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 262 FRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888877655443
No 373
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=89.95 E-value=19 Score=37.70 Aligned_cols=99 Identities=19% Similarity=0.151 Sum_probs=47.6
Q ss_pred cCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005594 279 EGDINQGVAYYKKALYYNWHY-ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357 (689)
Q Consensus 279 ~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 357 (689)
.++++++....+.. ++-|.- ......++..+.+.|..+.|+..-+ ++...+.|+ .+.|+.+.|.+..
T Consensus 274 ~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rFeLA---l~lg~L~~A~~~a 341 (443)
T PF04053_consen 274 RGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVT--------DPDHRFELA---LQLGNLDIALEIA 341 (443)
T ss_dssp TT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHHHHH---HHCT-HHHHHHHC
T ss_pred cCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHhHHH---HhcCCHHHHHHHH
Confidence 45666655554311 111211 2335556666667777766665432 233333333 4556666665533
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594 358 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 394 (689)
Q Consensus 358 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 394 (689)
+ ..+++..|..||.....+|+++-|.++|+++
T Consensus 342 ~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 342 K-----ELDDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp C-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred H-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 2 2235566677777777777777776666654
No 374
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.79 E-value=1.7 Score=41.68 Aligned_cols=64 Identities=33% Similarity=0.364 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (689)
Q Consensus 368 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (689)
..++..++..+...|+++.++..+++.+..+|-+..+|..+-..|...|+...|+..|++.-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4466778888888889999999999999999998899999999999999999999998888765
No 375
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.77 E-value=15 Score=40.44 Aligned_cols=114 Identities=11% Similarity=0.020 Sum_probs=70.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 005594 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (689)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 203 (689)
.++.+...|+-|+...+.- ..+.+ .++.+....|..++..|++++|...|-+.+..-.. +.+ ..-+..
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~----~~d~d---~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~-s~V----i~kfLd 409 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQ----HLDED---TLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP-SEV----IKKFLD 409 (933)
T ss_pred HHHHHhhhHHHHHHHHHhc----CCCHH---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh-HHH----HHHhcC
Confidence 4455666677776655431 11122 24666888899999999999999999888765221 111 112233
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005594 204 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249 (689)
Q Consensus 204 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 249 (689)
..+..+-..+++...+..-.+.+--..|-.+|.++++.++-.+..+
T Consensus 410 aq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~ 455 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFIS 455 (933)
T ss_pred HHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHh
Confidence 4445555566666666655555666677788888888776555443
No 376
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.75 E-value=28 Score=36.23 Aligned_cols=203 Identities=13% Similarity=0.046 Sum_probs=123.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHH
Q 005594 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP 192 (689)
Q Consensus 113 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 192 (689)
|-+-..+..+-.++.......-....+.+++....+ ..+ +..++.+|... ..++-...+++..+.+-++..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~-kma-------l~el~q~y~en-~n~~l~~lWer~ve~dfnDvv 133 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGES-KMA-------LLELLQCYKEN-GNEQLYSLWERLVEYDFNDVV 133 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcch-HHH-------HHHHHHHHHhc-CchhhHHHHHHHHHhcchhHH
Confidence 334444555555555555566666777777776554 222 67777888777 667778888888888888888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C--CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHH
Q 005594 193 AYYNLGVVYSELMQYDTALGCYEKAALER-P--MY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (689)
Q Consensus 193 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-p--~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 266 (689)
.-..|+..|.+ ++.+++..+|.+++... | .+ .+.|..+-. .--.+.+.-+....+.-...... ...
T Consensus 134 ~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~-----~~~ 205 (711)
T COG1747 134 IGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEG-----RGS 205 (711)
T ss_pred HHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccc-----hHH
Confidence 77888887776 88899999999987542 1 11 122222211 11222333333332222211110 111
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh--------------------cCCHHHHHHHHHHH
Q 005594 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE--------------------MLKFDMAIVFYELA 326 (689)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--------------------~g~~~~A~~~~~~a 326 (689)
.++..+-..|....++.+|++.+...++.+..+..+..++...+.. -.++.+++.-|++.
T Consensus 206 Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~ 285 (711)
T COG1747 206 VLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKL 285 (711)
T ss_pred HHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHH
Confidence 2233334556667899999999999999888877666665555444 44567777777777
Q ss_pred HhhCCC
Q 005594 327 FHFNPH 332 (689)
Q Consensus 327 l~~~p~ 332 (689)
+..+..
T Consensus 286 m~f~eG 291 (711)
T COG1747 286 MHFDEG 291 (711)
T ss_pred heeccC
Confidence 666443
No 377
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.33 E-value=0.52 Score=26.67 Aligned_cols=22 Identities=18% Similarity=-0.053 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 005594 404 AYNNLGVLYRDAGSISLAIDAY 425 (689)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~ 425 (689)
+...+|.++..+|+.++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3444555555555555555444
No 378
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.21 E-value=40 Score=37.32 Aligned_cols=28 Identities=11% Similarity=0.097 Sum_probs=22.4
Q ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHH
Q 005594 46 FEGKDALSYANILRSRNKFVDALALYEI 73 (689)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 73 (689)
.+....+.....+++.|.+++|.++..+
T Consensus 109 ~~~~p~Wa~Iyy~LR~G~~~~A~~~~~~ 136 (613)
T PF04097_consen 109 VNGDPIWALIYYCLRCGDYDEALEVANE 136 (613)
T ss_dssp ETTEEHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred CCCCccHHHHHHHHhcCCHHHHHHHHHH
Confidence 3566688889999999999999999843
No 379
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.88 E-value=0.63 Score=26.31 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 005594 370 SLNNLGVVYTVQGKMDAAAEMIE 392 (689)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~ 392 (689)
+...+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34455555555555555555443
No 380
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.87 E-value=5.8 Score=35.89 Aligned_cols=71 Identities=13% Similarity=0.195 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHHH
Q 005594 351 DKAVECYQMALSI-KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT----YAEAYNNLGVLYRDAGSISLAI 422 (689)
Q Consensus 351 ~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~ 422 (689)
++|...|-++-.. .-++++..+.+|..|. ..+.++|+..+.+++++.+. +++++..|+.++..+|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4455444433221 1134555666665554 44566666666666665332 3666666666666666666653
No 381
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=88.79 E-value=3.7 Score=30.58 Aligned_cols=61 Identities=20% Similarity=0.152 Sum_probs=46.9
Q ss_pred HHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHH---HHHHHcCCHHHHHHHHHHHHh
Q 005594 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG---ILYKDEGRLVEAAESYHKALS 144 (689)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la---~~~~~~g~~~~A~~~~~~al~ 144 (689)
-....|.-++..++.++|+..++++++..++.+.-+..+| .+|...|++.+.+++..+-+.
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677889999999999999999888776555554 677889999988887655444
No 382
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=88.40 E-value=0.81 Score=28.72 Aligned_cols=29 Identities=31% Similarity=0.583 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (689)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (689)
+++..||.+-...++|++|++-|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35667777777777777777777777765
No 383
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=88.29 E-value=1.7 Score=26.99 Aligned_cols=17 Identities=6% Similarity=-0.201 Sum_probs=6.0
Q ss_pred HHHHHHHhCCHHHHHHH
Q 005594 88 KGICLQMQNMGRLAFDS 104 (689)
Q Consensus 88 la~~~~~~g~~~~A~~~ 104 (689)
+|..+..+|++++|+..
T Consensus 7 ~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 7 LAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 33333333333333333
No 384
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=88.06 E-value=32 Score=34.71 Aligned_cols=141 Identities=13% Similarity=0.049 Sum_probs=98.5
Q ss_pred chhhHHHH--HHHHHhCCCHHHHHHHHHHHHHhCC-C--------CHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcC---
Q 005594 47 EGKDALSY--ANILRSRNKFVDALALYEIVLEKDS-G--------NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--- 112 (689)
Q Consensus 47 ~~~~~~~~--a~~~~~~g~~~~A~~~~~~~l~~~p-~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 112 (689)
+.+.++.+ ...+..++++.+|..+-+..+..-. . .+..|+.+..++...|+...-...+...+...
T Consensus 123 Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLr 202 (493)
T KOG2581|consen 123 EIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLR 202 (493)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhc
Confidence 34444443 3344567899999998887765311 1 24577888888888888777666666555431
Q ss_pred --CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCC
Q 005594 113 --PQ-NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189 (689)
Q Consensus 113 --p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 189 (689)
.. .......+-..|...+.|+.|.....+.. .|+.... ...+..++.+|.+..-+++|..|.+++-+++...|.
T Consensus 203 hd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~sn-ne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 203 HDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASN-NEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--Ccccccc-HHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 11 23345556678888999999998887764 3433222 245777888999999999999999999999999997
Q ss_pred C
Q 005594 190 Y 190 (689)
Q Consensus 190 ~ 190 (689)
+
T Consensus 280 ~ 280 (493)
T KOG2581|consen 280 H 280 (493)
T ss_pred h
Confidence 4
No 385
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=87.98 E-value=2.3 Score=33.51 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=16.7
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC
Q 005594 235 YKNRGDLESAIACYERCLAVSPN 257 (689)
Q Consensus 235 ~~~~g~~~~A~~~~~~al~~~~~ 257 (689)
..+.|++.+|++.+.+.++....
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~ 30 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQ 30 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhh
Confidence 45678888888888887765443
No 386
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=87.89 E-value=29 Score=34.05 Aligned_cols=158 Identities=12% Similarity=0.072 Sum_probs=107.8
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC--------------------------CHHHHHHHHHHHHhhC-CC
Q 005594 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML--------------------------KFDMAIVFYELAFHFN-PH 332 (689)
Q Consensus 280 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g--------------------------~~~~A~~~~~~al~~~-p~ 332 (689)
+--++|+.+-+-...+.|..++++-.++.+.++.. -.+++...+.+++... |.
T Consensus 210 ~Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pG 289 (415)
T COG4941 210 DLCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPG 289 (415)
T ss_pred hHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCC
Confidence 34578888888888889999988877777665432 1467777777777654 33
Q ss_pred CHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHH
Q 005594 333 CAEACNNLGVIYKD-----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPTYAEAY 405 (689)
Q Consensus 333 ~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 405 (689)
-....-.++.++.. .-++..-..+|.-...+.|+ +.+-.|.+....+..-...++...+..... -..+.-.+
T Consensus 290 PYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h 368 (415)
T COG4941 290 PYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYH 368 (415)
T ss_pred hHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccH
Confidence 33333344444433 23566666677666666654 455556666666666677777777665544 22344567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 005594 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (689)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (689)
...|..+.++|+.++|...|++++.+.++..+.
T Consensus 369 ~~RadlL~rLgr~~eAr~aydrAi~La~~~aer 401 (415)
T COG4941 369 AARADLLARLGRVEEARAAYDRAIALARNAAER 401 (415)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHhcCChHHH
Confidence 778999999999999999999999999886654
No 387
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=87.37 E-value=2 Score=36.65 Aligned_cols=51 Identities=20% Similarity=0.120 Sum_probs=40.7
Q ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCC
Q 005594 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNM 97 (689)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 97 (689)
..+..+..|+..+..|+|.-|..+.+.++..+|++.++...++.++.++|.
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 467788888889999999999999999999999998888888888877664
No 388
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=87.16 E-value=1.1 Score=28.12 Aligned_cols=26 Identities=35% Similarity=0.561 Sum_probs=12.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005594 337 CNNLGVIYKDRDNLDKAVECYQMALS 362 (689)
Q Consensus 337 ~~~la~~~~~~g~~~~A~~~~~~al~ 362 (689)
+..+|.+-...++|++|+.-|+++++
T Consensus 4 ~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 4 YDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444444444444444444444444
No 389
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.08 E-value=36 Score=38.67 Aligned_cols=26 Identities=12% Similarity=-0.042 Sum_probs=15.7
Q ss_pred HHhHHHHHHHhCCHHHHHHHHHHHHH
Q 005594 85 HIGKGICLQMQNMGRLAFDSFSEAVK 110 (689)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~ 110 (689)
+..|+..|...|+.++|++.+.+...
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 34455666666666666666666554
No 390
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.75 E-value=24 Score=38.99 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=10.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC
Q 005594 378 YTVQGKMDAAAEMIEKAIAANPT 400 (689)
Q Consensus 378 ~~~~g~~~~A~~~~~~al~~~p~ 400 (689)
++..|++++|++.+++. .+-|.
T Consensus 515 ~~~~g~~~~AL~~i~~L-~liP~ 536 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKL-DLIPL 536 (613)
T ss_dssp HHHTT-HHHHHHHHHHT-T-S-S
T ss_pred HHHcCCHHHHHHHHHhC-CCCCC
Confidence 34566777776666553 24443
No 391
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=85.81 E-value=49 Score=34.60 Aligned_cols=164 Identities=18% Similarity=0.153 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC------HHHHHhHHHHHHHhCCH-------HHHHHHHHHHHHc----
Q 005594 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGN------VEAHIGKGICLQMQNMG-------RLAFDSFSEAVKL---- 111 (689)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~---- 111 (689)
.....+|..++-.|+|+-|...|+.+.+-.-++ +.+.-..|.+++..+.. ++...+++.++..
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~ 288 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS 288 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence 346678999999999999999999887643322 12334455555555532 2333444443321
Q ss_pred -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhHHHH--HHcCChHHHHHHH
Q 005594 112 -------DPQNACAHTHCGILYKDEGRLVEAAESYHKALSA--DPSYKPAAECLAIVLTDLGTSL--KLAGNTQDGIQKY 180 (689)
Q Consensus 112 -------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~l~~~~--~~~~~~~~A~~~~ 180 (689)
......+....+.++...|.+.+|...+-+.... ..+... ..-+.++...+.++ ........-...+
T Consensus 289 ~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~--~~~alllE~~a~~~~~~~~~~~~~~~~r~ 366 (414)
T PF12739_consen 289 ALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRP--FGSALLLEQAAYCYASLRSNRPSPGLTRF 366 (414)
T ss_pred hccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhh--HhhHHHHHHHHHhhcccccCCCCccchhh
Confidence 1122345566677788888888887777666554 222110 00233344444444 1110000000000
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005594 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 221 (689)
Q Consensus 181 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 221 (689)
+ +.+--+..-|.-|...|+...|+.+|.+++...
T Consensus 367 R-------K~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY 400 (414)
T PF12739_consen 367 R-------KYAFHMVLAGHRYSKAGQKKHALRCYKQALQVY 400 (414)
T ss_pred H-------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 0 012223334566777777777777777776653
No 392
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=85.73 E-value=78 Score=36.85 Aligned_cols=24 Identities=17% Similarity=-0.166 Sum_probs=14.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 005594 304 YNLGVAYGEMLKFDMAIVFYELAF 327 (689)
Q Consensus 304 ~~la~~~~~~g~~~~A~~~~~~al 327 (689)
..|+..+..++++-+|-+.....+
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHh
Confidence 455556666666666666555443
No 393
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=85.49 E-value=46 Score=34.75 Aligned_cols=54 Identities=17% Similarity=-0.073 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCC
Q 005594 118 AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172 (689)
Q Consensus 118 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~ 172 (689)
....+|.+++..++|+-|...|+.+.+-.. +..++..++.+....|.+....+.
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~-~Dkaw~~~A~~~Em~alsl~~~~~ 263 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFK-NDKAWKYLAGAQEMAALSLLMQGQ 263 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHh-hchhHHHHHhHHHHHHHHHHhcCC
Confidence 456789999999999999999998877443 345566666666666666665553
No 394
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=85.44 E-value=35 Score=32.64 Aligned_cols=27 Identities=0% Similarity=0.070 Sum_probs=19.6
Q ss_pred HHHhHHHHHHcCChHHHHHHHHHHHhh
Q 005594 160 LTDLGTSLKLAGNTQDGIQKYYEALKI 186 (689)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~al~~ 186 (689)
-+.+..+++..|+..+|+..+++=+..
T Consensus 13 ~~ki~rl~l~~~~~~~Av~q~~~H~~~ 39 (247)
T PF11817_consen 13 AFKICRLYLWLNQPTEAVRQFRAHIDR 39 (247)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 455667777888888888888765544
No 395
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=85.41 E-value=25 Score=33.29 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=15.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005594 195 YNLGVVYSELMQYDTALGCYEKAALERP 222 (689)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~p 222 (689)
..++.+..+.|+|++.+.++++++..++
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~ 32 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNP 32 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCC
Confidence 4455555555555555555555555544
No 396
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=84.94 E-value=84 Score=36.58 Aligned_cols=109 Identities=17% Similarity=0.103 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH---HHHHHHH
Q 005594 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL---NNLGVVY 378 (689)
Q Consensus 302 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~la~~~ 378 (689)
.+...|..+...+.+++|.-.|+++=+. -.--.+|...|++.+|+....+. .+...+.. ..|+.-+
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl--------ekAl~a~~~~~dWr~~l~~a~ql---~~~~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGKL--------EKALKAYKECGDWREALSLAAQL---SEGKDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhccH--------HHHHHHHHHhccHHHHHHHHHhh---cCCHHHHHHHHHHHHHHH
Confidence 3444455555555555555444443110 00111223335555555444332 23333333 5667777
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594 379 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (689)
Q Consensus 379 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (689)
..++++-+|-+.....+.. |. + .-..|.+...|++|+.....+
T Consensus 1010 ~e~~kh~eAa~il~e~~sd-~~--~----av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSD-PE--E----AVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHcccchhHHHHHHHHhcC-HH--H----HHHHHhhHhHHHHHHHHHHhc
Confidence 7888888887777665432 21 1 123344555667776655444
No 397
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=84.67 E-value=24 Score=30.09 Aligned_cols=47 Identities=9% Similarity=0.018 Sum_probs=26.3
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005594 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249 (689)
Q Consensus 202 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 249 (689)
...+.....+.+++.++..++.++..+..+..+|.+.+ ..+.+..++
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~ 64 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLD 64 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHH
Confidence 34456666666666666665555666666666665432 333344433
No 398
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=84.61 E-value=1.9 Score=46.52 Aligned_cols=258 Identities=13% Similarity=0.078 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH--HhcCCC-CHHHHHHH
Q 005594 301 DAMYNLGVAYGEMLKFDMAIVFYELAFH--FNPH-CAEACNNLGVIYKDRDNLDKAVECYQMA--LSIKPN-FSQSLNNL 374 (689)
Q Consensus 301 ~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a--l~~~p~-~~~~~~~l 374 (689)
.....-+..+...|++..|...+.+.-. +.+. ........+.+....|++++|+..+... ..+.+. ....+...
T Consensus 25 ~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~ 104 (536)
T PF04348_consen 25 QLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLR 104 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHH
Confidence 4556667788888888888888887662 2332 2455566778888888888888888641 111111 13355567
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHhhhcc-CCC
Q 005594 375 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN-EGH 453 (689)
Q Consensus 375 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~ 453 (689)
+.++...|++-+|...+-..-.+-++......+.-.+...+...... .+++ ...+++......+-++..+-. ..+
T Consensus 105 A~a~~~~~~~l~Aa~~~i~l~~lL~d~~~~~~N~~~iW~~L~~l~~~--~L~~--~~~~~~~~l~GWl~La~i~~~~~~~ 180 (536)
T PF04348_consen 105 AQAYEQQGDPLAAARERIALDPLLPDPQERQENQDQIWQALSQLPPE--QLQQ--LRRASEPDLQGWLELALIYRQYQQD 180 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhcCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHcCCHH--HHHh--hhcCCCHHHHHHHHHHHHHHhccCC
Confidence 77888888887777665544433221111111111111111111111 1111 111122222111112222211 233
Q ss_pred hHHHHHHHHHHHHHHhhhccc--ccc-CCC--CCCCCCCeEEEEe---cCCcccchHHHHHHhhcccc---CCCceEEEE
Q 005594 454 DDKLFEAHRDWGKRFMRLYSQ--YTS-WDN--TKDPERPLVIGYV---SPDYFTHSVSYFIEAPLVYH---DYQNYKVVV 522 (689)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~--~~~-~~~--~~~~~~~lriG~~---S~d~~~h~v~~~~~~~~~~~---d~~~fev~~ 522 (689)
..........|..++...... .|. ... ...+..+-+|+.+ |+.|....- -...+++..+ ...+.+|.+
T Consensus 181 p~~l~~al~~Wq~~yP~HPA~~~lP~~l~~~~~~~~~~~~~IavLLPlsG~~a~~~~-aI~~G~~aA~~~~~~~~~~l~~ 259 (536)
T PF04348_consen 181 PAQLKQALNQWQQRYPNHPAAQYLPAALQQLLALQPAPPQRIAVLLPLSGRLARAGQ-AIRDGFLAAYYADADSRPELRF 259 (536)
T ss_dssp -----------------------------------------EEEEE--SSTTHHHHH-HHHHHHHHHH---TT--S-EEE
T ss_pred HHHHHHHHHHHHHhCcCCcccccCCHHHHHHHhhccCCccCEEEEeCCCCchhHHHH-HHHHHHHHhhcccccCCCceEE
Confidence 445555566777765432110 010 000 0112233456655 776664322 2234555555 456788888
Q ss_pred EeCCCCCChHhHHHHHHhhhcCCceEeCCCCCHHHHHHHHHhCCC
Q 005594 523 YSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKI 567 (689)
Q Consensus 523 y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~i 567 (689)
|.+... ++...+++.+...++ .-|.++.-+++.+.+....+
T Consensus 260 ~Dt~~~--~~~~~~~~a~~~ga~--~ViGPL~k~~V~~l~~~~~~ 300 (536)
T PF04348_consen 260 YDTNAD--SADALYQQAVADGAD--FVIGPLLKSNVEALAQLPQL 300 (536)
T ss_dssp EETTTS---HHHHHHHHHHTT----EEE---SHHHHHHHHH-GG-
T ss_pred ecCCCC--CHHHHHHHHHHcCCC--EEEcCCCHHHHHHHHhcCcc
Confidence 875432 333344443332222 23455665555555555544
No 399
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.36 E-value=4.4 Score=38.59 Aligned_cols=59 Identities=22% Similarity=0.311 Sum_probs=43.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005594 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429 (689)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 429 (689)
+...+..|...|.+.+|+++.++++.++|-+.+.+..+-.++..+|+--.|...|++.-
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34456667777888888888888888888777778888888888888777777776553
No 400
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=84.06 E-value=30 Score=30.69 Aligned_cols=141 Identities=16% Similarity=0.168 Sum_probs=77.5
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----C
Q 005594 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYG-----EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR-----D 348 (689)
Q Consensus 279 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g 348 (689)
++++++|...|+.--..+. .+...+.+|..+. ..++...|++.+..+-. .+.+.+...+|.++..- +
T Consensus 48 ~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~ 124 (248)
T KOG4014|consen 48 QKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKA 124 (248)
T ss_pred HHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccC
Confidence 3566777766665443322 3344444444333 23457777777777665 34566666666666532 2
Q ss_pred --CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHH
Q 005594 349 --NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT--YAEAYNNLGVLYRDAGSISLAIDA 424 (689)
Q Consensus 349 --~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~ 424 (689)
+.++|.+++.++-.+ ++..+.+.|...+..-. ++ +....|. .+. ..+..+.-..+.+.|.++
T Consensus 125 dpd~~Ka~~y~traCdl--~~~~aCf~LS~m~~~g~--~k-------~~t~ap~~g~p~---~~~~~~~~~kDMdka~qf 190 (248)
T KOG4014|consen 125 DPDSEKAERYMTRACDL--EDGEACFLLSTMYMGGK--EK-------FKTNAPGEGKPL---DRAELGSLSKDMDKALQF 190 (248)
T ss_pred CCCcHHHHHHHHHhccC--CCchHHHHHHHHHhccc--hh-------hcccCCCCCCCc---chhhhhhhhHhHHHHHHH
Confidence 367788888887665 34555566655554321 11 1112331 111 122334445677888888
Q ss_pred HHHHHhcCCCCh
Q 005594 425 YEQCLKIDPDSR 436 (689)
Q Consensus 425 ~~~al~~~p~~~ 436 (689)
--+|.+++--..
T Consensus 191 a~kACel~~~~a 202 (248)
T KOG4014|consen 191 AIKACELDIPQA 202 (248)
T ss_pred HHHHHhcCChHH
Confidence 888887754333
No 401
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.80 E-value=67 Score=34.56 Aligned_cols=97 Identities=18% Similarity=0.174 Sum_probs=85.5
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC------HHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 005594 50 DALSYANILRSRNKFVDALALYEIVLEKDSGN------VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (689)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (689)
.+...|..+++..+|..++++|...+.--|.+ +.....++.||+.+.+.+.|.+++++|-+.+|.++-.....-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 45678889999999999999999999876654 356778899999999999999999999999999999988888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcC
Q 005594 124 ILYKDEGRLVEAAESYHKALSAD 146 (689)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~ 146 (689)
.+....|+-++|+.+..+.....
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhhh
Confidence 99999999999999988876653
No 402
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.74 E-value=3.1 Score=27.19 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=15.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 005594 406 NNLGVLYRDAGSISLAIDAYEQCLK 430 (689)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al~ 430 (689)
+.||.+|..+|+.+.|.+.+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4566666666666666666666663
No 403
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=83.60 E-value=53 Score=33.20 Aligned_cols=199 Identities=18% Similarity=0.055 Sum_probs=121.7
Q ss_pred HHhCCCHHHHHHHHHHHHHhCCC-----CHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcC-----------C------C-
Q 005594 58 LRSRNKFVDALALYEIVLEKDSG-----NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD-----------P------Q- 114 (689)
Q Consensus 58 ~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----------p------~- 114 (689)
....|-+.+--...-++++.-|. +...++.+...++-.|. ++...+.+.+-.. | .
T Consensus 40 ~i~kg~~tke~r~I~R~lr~l~~~r~kln~~vL~~~v~~~~~~~s--e~~~~~l~fv~~~~~~~~p~~~~s~~t~~a~~~ 117 (493)
T KOG2581|consen 40 QIDKGVYTKEPRFILRALRLLPSTRRKLNGAVLYKLVSSLLSSGS--EAMDRLLRFVPAFDKNIKPLDTDSPNTQSALKR 117 (493)
T ss_pred HHhccccccchHHHHHHHHhhhhhHhhhhHHHHHHHHHHHcCCch--HHHHHHHhhcccccccCCccccccccccccccc
Confidence 35566555555555666665553 34455555555544442 5555554443210 1 0
Q ss_pred -----CHHHHHHH-H-HHHHHcCCHHHHHHHHHHHHhc-CCCC-HHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHh
Q 005594 115 -----NACAHTHC-G-ILYKDEGRLVEAAESYHKALSA-DPSY-KPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185 (689)
Q Consensus 115 -----~~~~~~~l-a-~~~~~~g~~~~A~~~~~~al~~-~p~~-~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~ 185 (689)
...++..+ + ..+..+.++++|.+.-+..+.. .-.+ ......-+.+|+-+...+...++...-...+...+.
T Consensus 118 k~~~~Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lr 197 (493)
T KOG2581|consen 118 KPLPAEIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLR 197 (493)
T ss_pred CCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 12333332 2 3334568899998887766542 1111 222233456677778888888886666555554443
Q ss_pred h-----CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005594 186 I-----DP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALE----RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (689)
Q Consensus 186 ~-----~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 255 (689)
. +. ..+...+.+-..|...+.|+.|.....+..-- +...+...+.+|.+..-+++|..|.+++-+++...
T Consensus 198 tAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 198 TATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred HhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence 3 22 22445566778888899999999888776411 11335678889999999999999999999999999
Q ss_pred CCc
Q 005594 256 PNF 258 (689)
Q Consensus 256 ~~~ 258 (689)
|++
T Consensus 278 pq~ 280 (493)
T KOG2581|consen 278 PQH 280 (493)
T ss_pred cch
Confidence 974
No 404
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=83.57 E-value=4.6 Score=39.56 Aligned_cols=62 Identities=23% Similarity=0.314 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005594 319 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380 (689)
Q Consensus 319 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 380 (689)
|..+|.+|..+.|++...++.+|.++...|+.=.|+-+|-+++-.....+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 45666666666666666677777666666666666666666665544445566666666655
No 405
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=83.35 E-value=3.7 Score=40.18 Aligned_cols=62 Identities=24% Similarity=0.330 Sum_probs=52.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 005594 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414 (689)
Q Consensus 353 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 414 (689)
|+.+|.+|..+.|++...++.+|.+....|+.-+|+-+|-+++....-.+.+..+|..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999987755558888999888888
No 406
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=83.34 E-value=32 Score=32.78 Aligned_cols=181 Identities=13% Similarity=0.028 Sum_probs=110.0
Q ss_pred hhHHHHHHHHHhCCCH-HHHHHHHHHHHHhCCCCHHHHHhHHHHHHH--------hCCHHHHHHHHHHHHHcCCCCHHHH
Q 005594 49 KDALSYANILRSRNKF-VDALALYEIVLEKDSGNVEAHIGKGICLQM--------QNMGRLAFDSFSEAVKLDPQNACAH 119 (689)
Q Consensus 49 ~~~~~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~ 119 (689)
..+....+...+.++| ..|++.-...+..+|.....+...-.+... ..-.+.-++.+..+++-+|.+...|
T Consensus 32 ~~l~gr~~a~r~kkeys~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW 111 (328)
T COG5536 32 HPLMGRFRAKRRKKEYSVRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIW 111 (328)
T ss_pred chHHHHHHHHHhhhhcCHHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhh
Confidence 3445556666666665 578888888888888776666655554433 1234556778888899999999988
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 005594 120 THCGILYKDE--GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 197 (689)
Q Consensus 120 ~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 197 (689)
...-.++... .++..-....++.++.++.+...+...-.++.. +........+..-.++-..++..++.+..+|...
T Consensus 112 ~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~-ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r 190 (328)
T COG5536 112 HHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRT-IEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHR 190 (328)
T ss_pred HHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeec-chhhccchhHHHHHHhHHHHHhhCCCChHHHHHH
Confidence 8887777664 567777888888898888876654322111111 2222223344444556666777788887777665
Q ss_pred ---HHHHHHcCC------HHHHHHHHHHHHHhCCCCHHHHHH
Q 005594 198 ---GVVYSELMQ------YDTALGCYEKAALERPMYAEAYCN 230 (689)
Q Consensus 198 ---a~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~ 230 (689)
-......|+ +++-+++.-.++-.+|++..+|..
T Consensus 191 ~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y 232 (328)
T COG5536 191 YIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGY 232 (328)
T ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhH
Confidence 222223333 233344444444455665555543
No 407
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.12 E-value=5.3 Score=38.02 Aligned_cols=61 Identities=13% Similarity=0.030 Sum_probs=50.9
Q ss_pred HHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005594 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALS 144 (689)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 144 (689)
.+...+..|...|.+.+|+++.++++..+|-+...+..+-.++...|+--.+.+.|++.-+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4455677788889999999999999999999888999999999999998888887776644
No 408
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.31 E-value=19 Score=38.18 Aligned_cols=132 Identities=17% Similarity=0.219 Sum_probs=73.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005594 309 AYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 388 (689)
Q Consensus 309 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 388 (689)
+..+.|+++.|.++..++ ++..-|..||.+....+++..|.+++.++.... .|-.++...|+-+.-.
T Consensus 646 lal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~--------~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDLG--------SLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcchh--------hhhhhhhhcCChhHHH
Confidence 445677888777665543 456778888888888888888888888875431 1222233333333222
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHHHhhhccCCChHHHHHHHHHHHHHH
Q 005594 389 EMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRF 468 (689)
Q Consensus 389 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (689)
..-..+-+....+ .--.+|...|+++++++.+.+.-++ |+ .-+++..|+. .+.-+....|...+
T Consensus 713 ~la~~~~~~g~~N-----~AF~~~~l~g~~~~C~~lLi~t~r~-pe------Aal~ArtYlp----s~vs~iv~~wk~~l 776 (794)
T KOG0276|consen 713 VLASLAKKQGKNN-----LAFLAYFLSGDYEECLELLISTQRL-PE------AALFARTYLP----SQVSRIVELWKEDL 776 (794)
T ss_pred HHHHHHHhhcccc-----hHHHHHHHcCCHHHHHHHHHhcCcC-cH------HHHHHhhhCh----HHHHHHHHHHHHHh
Confidence 2221111111111 1124677889999888877654322 22 2345666653 34444455666555
Q ss_pred h
Q 005594 469 M 469 (689)
Q Consensus 469 ~ 469 (689)
.
T Consensus 777 ~ 777 (794)
T KOG0276|consen 777 S 777 (794)
T ss_pred h
Confidence 4
No 409
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.99 E-value=42 Score=30.87 Aligned_cols=62 Identities=18% Similarity=0.095 Sum_probs=56.2
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCH
Q 005594 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA 116 (689)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (689)
...+++.+..++|+...+.-++.+|.+......+-..+.-.|+|++|...++-+-++.|+..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 45678889999999999999999999999999999999999999999999999999988753
No 410
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=81.42 E-value=38 Score=30.05 Aligned_cols=64 Identities=16% Similarity=0.189 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHh
Q 005594 189 HYAPAYYNLGVVYSE-LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN-----RGDLESAIACYERCLA 253 (689)
Q Consensus 189 ~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~ 253 (689)
..++....||..+.- +.++++|.+.|+.--..+ ..+...+.+|..+.. .++...|++.++.+-.
T Consensus 32 K~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~ 101 (248)
T KOG4014|consen 32 KRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD 101 (248)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc
Confidence 345555555554432 345555555555433322 223444444443322 2345555555555544
No 411
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=80.91 E-value=2.6 Score=41.27 Aligned_cols=70 Identities=14% Similarity=0.104 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhH
Q 005594 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (689)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (689)
...+++.+-.+.+.+..|+..-..++..++....+++..+..+....++++|++.++.+....|++....
T Consensus 277 ~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~ 346 (372)
T KOG0546|consen 277 IRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIE 346 (372)
T ss_pred cccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHH
Confidence 3344555555566666665555555555555556666666666666666666666666666666655443
No 412
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.27 E-value=34 Score=36.41 Aligned_cols=100 Identities=20% Similarity=0.098 Sum_probs=51.1
Q ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005594 57 ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAA 136 (689)
Q Consensus 57 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 136 (689)
.+.-.|+++.|...+-.+ | .+.....+..+..+|-.++|++ +.++.. ..-.+..+.|+++.|.
T Consensus 595 t~vmrrd~~~a~~vLp~I----~--k~~rt~va~Fle~~g~~e~AL~-------~s~D~d----~rFelal~lgrl~iA~ 657 (794)
T KOG0276|consen 595 TLVLRRDLEVADGVLPTI----P--KEIRTKVAHFLESQGMKEQALE-------LSTDPD----QRFELALKLGRLDIAF 657 (794)
T ss_pred HHhhhccccccccccccC----c--hhhhhhHHhHhhhccchHhhhh-------cCCChh----hhhhhhhhcCcHHHHH
Confidence 445556666665543332 2 2234444555555555544443 322211 1123345666777666
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHh
Q 005594 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185 (689)
Q Consensus 137 ~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~ 185 (689)
+...++- +..- |..||......+++..|.+++.++..
T Consensus 658 ~la~e~~-----s~~K-------w~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 658 DLAVEAN-----SEVK-------WRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred HHHHhhc-----chHH-------HHHHHHHHhhcccchhHHHHHHhhcc
Confidence 6544431 1111 56666667777777777777766543
No 413
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.80 E-value=16 Score=33.40 Aligned_cols=59 Identities=19% Similarity=0.174 Sum_probs=42.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 005594 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 401 (689)
Q Consensus 343 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 401 (689)
-+.+.+...+|+...+.-++.+|.+......+-.++.-.|+|++|...++-+-++.|++
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 34556677777777777777777777777777777777777777777777777777764
No 414
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.10 E-value=4.6 Score=26.38 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=18.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH
Q 005594 52 LSYANILRSRNKFVDALALYEIVLE 76 (689)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~ 76 (689)
+.+|..|...|+++.|..++++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5567777777777777777777774
No 415
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=78.82 E-value=72 Score=32.84 Aligned_cols=63 Identities=17% Similarity=-0.003 Sum_probs=37.7
Q ss_pred HHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCH--HHHHHH--HHHHHHcCCHHHHHHHHHHHHHh
Q 005594 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA--PAYYNL--GVVYSELMQYDTALGCYEKAALE 220 (689)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~l--a~~~~~~g~~~~A~~~~~~al~~ 220 (689)
......+..++..++|..|.+.+..+...-|... ..+..+ |..+...-++.+|.+.+++.+..
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3345556666777888888888877776423222 233333 33345566777777777776554
No 416
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=78.69 E-value=71 Score=31.49 Aligned_cols=162 Identities=15% Similarity=0.037 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc--------------------------CCHHHHHHHHHHHHhcCC-CCH
Q 005594 98 GRLAFDSFSEAVKLDPQNACAHTHCGILYKDE--------------------------GRLVEAAESYHKALSADP-SYK 150 (689)
Q Consensus 98 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------------------------g~~~~A~~~~~~al~~~p-~~~ 150 (689)
-++|+..-.-...+-|..++++-.++.+.++. +-.+++...+.+++.... .-.
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPY 291 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPY 291 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChH
Confidence 35777777777788888888877776665532 225667777777766543 211
Q ss_pred HHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHH
Q 005594 151 PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--RPMYAEAY 228 (689)
Q Consensus 151 ~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 228 (689)
.....++.++. .+ .....-+|..-..+|.-.....|+ +.+-.|.+....+..-...++...+.+... -......+
T Consensus 292 qlqAAIaa~HA-~a-~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h 368 (415)
T COG4941 292 QLQAAIAALHA-RA-RRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYH 368 (415)
T ss_pred HHHHHHHHHHH-hh-cccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccH
Confidence 11111111111 11 112234666666666666666655 555566677777766777778777776654 23344566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 005594 229 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (689)
Q Consensus 229 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 262 (689)
...|..+.+.|+.++|...|++++.+.++..+..
T Consensus 369 ~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~ 402 (415)
T COG4941 369 AARADLLARLGRVEEARAAYDRAIALARNAAERA 402 (415)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHH
Confidence 7789999999999999999999999988766543
No 417
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=78.61 E-value=2.4e+02 Score=37.53 Aligned_cols=131 Identities=12% Similarity=0.141 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHH---HHHHHHHHcC-CHHHHHHHHHHHHh-c--CCCCHHHHHH
Q 005594 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC-AEACN---NLGVIYKDRD-NLDKAVECYQMALS-I--KPNFSQSLNN 373 (689)
Q Consensus 302 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~---~la~~~~~~g-~~~~A~~~~~~al~-~--~p~~~~~~~~ 373 (689)
+....|.+..+.|-++.++..+.+...+..-. .++.. .-+.+|.... ....++++.+..-- . +...++.+..
T Consensus 2738 ~in~fakvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~l 2817 (3550)
T KOG0889|consen 2738 AINRFAKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTL 2817 (3550)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHh
Confidence 34445555556666666666665555442211 11111 1222333222 33333333322110 0 1122456667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCC----HHHHHHHHHHHHhcC
Q 005594 374 LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD----AGS----ISLAIDAYEQCLKID 432 (689)
Q Consensus 374 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~----~~~A~~~~~~al~~~ 432 (689)
.|....+.|+.++|-+.|..|++++...+.+|..-|..... .+. -..|+.+|-+|....
T Consensus 2818 kG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~ 2884 (3550)
T KOG0889|consen 2818 KGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLY 2884 (3550)
T ss_pred hhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccc
Confidence 77778888888888888888888877777777766654432 222 234555555555443
No 418
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=77.34 E-value=21 Score=34.20 Aligned_cols=62 Identities=24% Similarity=0.186 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005594 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPM------YAEAYCNMGVIYKNRGDLESAIACYERCL 252 (689)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al 252 (689)
......+|..|+..|++++|+++|+.+...... ...+...+..++...|+.+..+.+.-+++
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 344567788888888888888888887654321 24566677788888888887777665544
No 419
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=77.00 E-value=7 Score=22.89 Aligned_cols=27 Identities=30% Similarity=0.281 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHhHH
Q 005594 63 KFVDALALYEIVLEKDSGNVEAHIGKG 89 (689)
Q Consensus 63 ~~~~A~~~~~~~l~~~p~~~~~~~~la 89 (689)
+.+.|..+|++++...|.++..|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 445555555555555555555544443
No 420
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=76.89 E-value=6.9 Score=22.92 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHhCCCcHHHHH
Q 005594 385 DAAAEMIEKAIAANPTYAEAYN 406 (689)
Q Consensus 385 ~~A~~~~~~al~~~p~~~~~~~ 406 (689)
+.|...|++++...|.+..+|.
T Consensus 4 ~~~r~i~e~~l~~~~~~~~~W~ 25 (33)
T smart00386 4 ERARKIYERALEKFPKSVELWL 25 (33)
T ss_pred HHHHHHHHHHHHHCCCChHHHH
Confidence 3333444444444443333333
No 421
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=76.37 E-value=5.9 Score=38.93 Aligned_cols=84 Identities=17% Similarity=0.073 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005594 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413 (689)
Q Consensus 334 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 413 (689)
.....+++.+-.+.+.+..|+..-..++..+++...+++..+..+....++++|++.++.+....|++..+...+..+-.
T Consensus 275 ~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~ 354 (372)
T KOG0546|consen 275 FSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ 354 (372)
T ss_pred cccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence 34455577777788888888877777777777777888888888888888888888888888888888776666555544
Q ss_pred HcCC
Q 005594 414 DAGS 417 (689)
Q Consensus 414 ~~g~ 417 (689)
...+
T Consensus 355 ~~~~ 358 (372)
T KOG0546|consen 355 KKKQ 358 (372)
T ss_pred HHHH
Confidence 4433
No 422
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=76.19 E-value=34 Score=35.10 Aligned_cols=61 Identities=15% Similarity=0.104 Sum_probs=48.8
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHH-------h-CCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHH
Q 005594 50 DALSYANILRSRNKFVDALALYEIVLE-------K-DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVK 110 (689)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~-------~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 110 (689)
.++.+.+++.-.|+|..|++.++.+-- . -+-+...++..|.+|+.+++|.+|++.|..++-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678889999999999999876411 1 223567889999999999999999999998874
No 423
>PF12854 PPR_1: PPR repeat
Probab=75.92 E-value=7.8 Score=23.53 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Q 005594 334 AEACNNLGVIYKDRDNLDKAVECYQ 358 (689)
Q Consensus 334 ~~~~~~la~~~~~~g~~~~A~~~~~ 358 (689)
...|..+...+.+.|+.++|.+.++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3444455555555555555555544
No 424
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=74.12 E-value=54 Score=27.86 Aligned_cols=50 Identities=12% Similarity=0.088 Sum_probs=33.7
Q ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHH
Q 005594 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106 (689)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 106 (689)
..+...+.....+.+++.++..++.++..+..+...|.+. +..+.++.++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 15 ELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 3445567788888888888887777777777777777654 3344555544
No 425
>PF12854 PPR_1: PPR repeat
Probab=73.14 E-value=9.9 Score=23.08 Aligned_cols=27 Identities=22% Similarity=0.178 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005594 115 NACAHTHCGILYKDEGRLVEAAESYHK 141 (689)
Q Consensus 115 ~~~~~~~la~~~~~~g~~~~A~~~~~~ 141 (689)
+...|..+...+.+.|+.++|.+.+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 344566666666666666666666654
No 426
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=72.51 E-value=1.2e+02 Score=31.02 Aligned_cols=58 Identities=19% Similarity=0.050 Sum_probs=42.2
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-----CHHHHHhHHHHH--HHhCCHHHHHHHHHH
Q 005594 50 DALSYANILRSRNKFVDALALYEIVLEKDSG-----NVEAHIGKGICL--QMQNMGRLAFDSFSE 107 (689)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~~--~~~g~~~~A~~~~~~ 107 (689)
.....+..++..++|..|.+.|++++...+. ....+..++.+| ...-++++|.+.+++
T Consensus 132 ~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 132 TEQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 3444677899999999999999999987542 233444454444 566788899998875
No 427
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=70.80 E-value=31 Score=28.90 Aligned_cols=52 Identities=15% Similarity=0.167 Sum_probs=21.4
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005594 345 KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396 (689)
Q Consensus 345 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 396 (689)
..+|+-++-.+.+....+-+..+++.+..+|.+|.+.|+..+|-+.+.+|-+
T Consensus 97 v~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 97 VKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3444444444444444433334445555555555555555555555554443
No 428
>PF13041 PPR_2: PPR repeat family
Probab=70.43 E-value=24 Score=23.49 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005594 193 AYYNLGVVYSELMQYDTALGCYEKAAL 219 (689)
Q Consensus 193 ~~~~la~~~~~~g~~~~A~~~~~~al~ 219 (689)
.|..+-..+.+.|++++|.++|++..+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 444445555555555555555555544
No 429
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=70.17 E-value=18 Score=33.09 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005594 385 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (689)
Q Consensus 385 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (689)
+..++..++.++..|+ +.++.+++.++...|+.++|.+..+++..+.|.
T Consensus 128 ~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 128 EAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4445566666666775 778888888888888888888888888888883
No 430
>PF13041 PPR_2: PPR repeat family
Probab=69.56 E-value=26 Score=23.36 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=10.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 005594 337 CNNLGVIYKDRDNLDKAVECYQMAL 361 (689)
Q Consensus 337 ~~~la~~~~~~g~~~~A~~~~~~al 361 (689)
|..+-..+.+.|++++|.+.|++..
T Consensus 6 yn~li~~~~~~~~~~~a~~l~~~M~ 30 (50)
T PF13041_consen 6 YNTLISGYCKAGKFEEALKLFKEMK 30 (50)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3333334444444444444444433
No 431
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=69.16 E-value=1.1e+02 Score=29.42 Aligned_cols=131 Identities=18% Similarity=0.064 Sum_probs=76.7
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC----------HHHHH---hH-HHHHHHhCCHHHHHHHHHHHHHcCCC
Q 005594 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGN----------VEAHI---GK-GICLQMQNMGRLAFDSFSEAVKLDPQ 114 (689)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----------~~~~~---~l-a~~~~~~g~~~~A~~~~~~al~~~p~ 114 (689)
.-+-..|+.+.-..||..|+..+++.++.-..+ .+... .. ..++..++++.+++...-+..+.-.+
T Consensus 36 ~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEk 115 (309)
T PF07163_consen 36 SLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEK 115 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCccc
Confidence 345556788888999999999999998753111 11111 11 24567788888888776666543323
Q ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHH
Q 005594 115 N-ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180 (689)
Q Consensus 115 ~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~ 180 (689)
- +.++-.-...|.+.+++....+.-...+. +|+|......-+.+-..+-.++.=.|.+++|.+..
T Consensus 116 lPpkIleLCILLysKv~Ep~amlev~~~WL~-~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 116 LPPKILELCILLYSKVQEPAAMLEVASAWLQ-DPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-CcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 2 34455555667788888888777776665 34443321111111122333444456666666554
No 432
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=68.91 E-value=22 Score=33.88 Aligned_cols=134 Identities=11% Similarity=0.052 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHh--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH------HHcCCHHHH
Q 005594 64 FVDALALYEIVLEKDSGNVEAHIGKGICLQMQ--NMGRLAFDSFSEAVKLDPQNACAHTHCGILY------KDEGRLVEA 135 (689)
Q Consensus 64 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~------~~~g~~~~A 135 (689)
.+.-+..+..+++.+|.+...|...-.++... .++..-+...++.++.++.|...|...-.+. .....+.+-
T Consensus 90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e 169 (328)
T COG5536 90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHE 169 (328)
T ss_pred hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHH
Confidence 35556778888899999999998887777655 5677888888999999999988776554444 334445555
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHH---HHHhHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 005594 136 AESYHKALSADPSYKPAAECLAIV---LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (689)
Q Consensus 136 ~~~~~~al~~~p~~~~~~~~~a~~---~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 198 (689)
.++-..++..++.+..++...... ..+.|..-.+ .-+++-+++.-..+-.+|++..+|..+-
T Consensus 170 ~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visq-k~l~~eL~~i~~~if~~p~~~S~w~y~r 234 (328)
T COG5536 170 LEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQ-KYLEKELEYIFDKIFTDPDNQSVWGYLR 234 (328)
T ss_pred HHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchH-HHHHHHHHHHHhhhhcCccccchhhHHH
Confidence 666677888899998887665222 2222211111 1245556666667777898888776543
No 433
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=68.50 E-value=21 Score=35.67 Aligned_cols=189 Identities=10% Similarity=-0.052 Sum_probs=90.9
Q ss_pred EEEEecCCcccchHHHHHHhhccccCCCceEEEEEeCCCCCChHhHHHHHH--hh-hcCCceEeCCCCCHHHHHHHHHhC
Q 005594 489 VIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREK--VM-KKGGIWRDIYGIDEKKVAAMVRED 565 (689)
Q Consensus 489 riG~~S~d~~~h~v~~~~~~~~~~~d~~~fev~~y~~~~~~d~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~i~~d 565 (689)
||.++++.+...-+...+..+.+.+....++|.++................ .. ................+.+.|+..
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSNVKLIPVRVLKLKSLRDLLAILRLRRLLRKE 80 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccchhhhceeeeecccccchhHHHHHHHHHHhc
Confidence 466777776544444555566666666778888887654332211100000 00 000000111112345788999999
Q ss_pred CCcEEEecCCCCCCCchhhhccC-CCceEEecccCCCCCCC-------------CcccEEeecCCCCCccccccCc---c
Q 005594 566 KIDILVELTGHTANNKLGMMACQ-PAPVQVTWIGYPNTTGL-------------PTIDYRITDSLADPPETKQKHV---E 628 (689)
Q Consensus 566 ~idilvdl~g~t~~~~~~~~a~r-~APvq~~~~G~p~t~g~-------------~~~Dy~i~d~~~~p~~~~~~y~---E 628 (689)
++||++-... ....-+..+..+ -.|+-+..-+.+..... ...|.+|+-....-......|. +
T Consensus 81 ~~dii~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~ 159 (353)
T cd03811 81 KPDVVISHLT-TTPNVLALLAARLGTKLIVWEHNSLSLELKRKLRLLLLIRKLYRRADKIVAVSEGVKEDLLKLLGIPPD 159 (353)
T ss_pred CCCEEEEcCc-cchhHHHHHHhhcCCceEEEEcCcchhhhccchhHHHHHHhhccccceEEEeccchhhhHHHhhcCCcc
Confidence 9999997766 232233333322 24555544444322221 3456666533222222333343 6
Q ss_pred ceeecCCCccccCCCCCCCCCCCC--CCCCCCCEEEEeCCCC--CCCCHHHHHhhhh
Q 005594 629 ELIRLPECFLCYTPSPEAGPVCPT--PALTNGFITFGSFNNL--AKCKTQISFNIGA 681 (689)
Q Consensus 629 ~l~~lp~~~~~~~~~~~~~~~~~~--~~~~~~~~~f~~~n~~--~k~~~~~~~~w~~ 681 (689)
++..+|+..- +....+..... ....++.++|+++.+. .|-.+..++.|..
T Consensus 160 ~~~vi~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~ 213 (353)
T cd03811 160 KIEVIYNPID---IEEIRALAEEPLELGIPPDGPVILAVGRLSPQKGFDTLIRAFAL 213 (353)
T ss_pred ccEEecCCcC---hhhcCcccchhhhcCCCCCceEEEEEecchhhcChHHHHHHHHH
Confidence 7777776531 11111111110 1223455556666654 4666777777765
No 434
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=67.52 E-value=1.2e+02 Score=28.95 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=45.0
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHh-CC--CCHHHHHhHHHHHHH-hCCHHHHHHHHHHH
Q 005594 50 DALSYANILRSRNKFVDALALYEIVLEK-DS--GNVEAHIGKGICLQM-QNMGRLAFDSFSEA 108 (689)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~p--~~~~~~~~la~~~~~-~g~~~~A~~~~~~a 108 (689)
.++.+|...-+.++|++.+...+++++. +| -+.+-...+..+|-. .|....+...+...
T Consensus 3 ~~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~si 65 (244)
T smart00101 3 ENVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSI 65 (244)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHH
Confidence 5677899999999999999999999886 44 356667777777753 46677777777653
No 435
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=65.72 E-value=30 Score=25.75 Aligned_cols=29 Identities=17% Similarity=0.149 Sum_probs=20.1
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005594 48 GKDALSYANILRSRNKFVDALALYEIVLE 76 (689)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 76 (689)
+..+...|..+-..|++++|+.+|+++++
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44566677777777877777777766554
No 436
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=64.85 E-value=1.8e+02 Score=30.11 Aligned_cols=60 Identities=22% Similarity=0.310 Sum_probs=45.2
Q ss_pred HHHhHHHHHHcCChHHHHHHHHHHH--------hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005594 160 LTDLGTSLKLAGNTQDGIQKYYEAL--------KIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219 (689)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~al--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 219 (689)
+..+.+++...|+|..|++.++..- ...+-+...++.+|-+|..+++|.+|++.|...+-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888899999998876431 11223466788899999999999999999988764
No 437
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=64.83 E-value=25 Score=30.05 Aligned_cols=47 Identities=19% Similarity=0.186 Sum_probs=26.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 005594 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 417 (689)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 417 (689)
....+.-.+..|++.-|.++.+.++..+|++.++...++.++..+|.
T Consensus 73 vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 73 VLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 33444445555666666666666666666666666666666655543
No 438
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.12 E-value=2.5e+02 Score=31.63 Aligned_cols=64 Identities=23% Similarity=0.161 Sum_probs=47.7
Q ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-HHHHHhHHHHHHHhCCHHHHHHHHHHHHHc
Q 005594 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGN-VEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111 (689)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 111 (689)
....+-..-.+++++.-|+-|+.+.+.- ..+++. .+.+...|.-++..|++++|...|-+.+..
T Consensus 333 ~ek~le~kL~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 333 IEKDLETKLDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred eeccHHHHHHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 3445556677888888999999887653 223332 357778899999999999999999988764
No 439
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=63.49 E-value=77 Score=34.78 Aligned_cols=119 Identities=14% Similarity=0.174 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH------HHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhC-
Q 005594 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA------AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID- 187 (689)
Q Consensus 115 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~- 187 (689)
.++.-.++-..|....+|+.-++..+..-+ -|+..+. .+.++.++.. --+-|+-++|+...-.+++..
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~-iP~t~~vve~~nv~f~YaFALNR----RNr~GDRakAL~~~l~lve~eg 274 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKR-IPDTLKVVETHNVRFHYAFALNR----RNRPGDRAKALNTVLPLVEKEG 274 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHh-CcchhhhhccCceEEEeeehhcc----cCCCccHHHHHHHHHHHHHhcC
Confidence 456667777788888888888777766543 3432111 0001111111 123477888888888777764
Q ss_pred CCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005594 188 PHYAPAYYNLGVVYSE---------LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (689)
Q Consensus 188 ~~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (689)
+-.++.+..-|++|.. .+..+.|+++|+++.+..|.... -.+++.++...|
T Consensus 275 ~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~s-GIN~atLL~aaG 334 (1226)
T KOG4279|consen 275 PVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYS-GINLATLLRAAG 334 (1226)
T ss_pred CCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhc-cccHHHHHHHhh
Confidence 3345666666666643 35667889999999988886432 234555555444
No 440
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=63.43 E-value=5e+02 Score=34.89 Aligned_cols=111 Identities=15% Similarity=0.150 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHH---HHHHHHHHcC-CHHHHHHHHHHHHHh---CCCcHHHH
Q 005594 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-SQSLN---NLGVVYTVQG-KMDAAAEMIEKAIAA---NPTYAEAY 405 (689)
Q Consensus 334 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~---~la~~~~~~g-~~~~A~~~~~~al~~---~p~~~~~~ 405 (689)
+.+.+..|.+..+.|-++-++..+.+...+..-. .++.. .-+.+|.... ....+++..+..--. +...++.+
T Consensus 2736 A~~in~fakvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff 2815 (3550)
T KOG0889|consen 2736 AWAINRFAKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFF 2815 (3550)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHH
Confidence 3445566666677777777777777766653221 12222 2233343332 334444443322111 12235677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHhhHHH
Q 005594 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 444 (689)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 444 (689)
...|....+.|+.++|-+.|..|++++-.-..+|..+..
T Consensus 2816 ~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~ 2854 (3550)
T KOG0889|consen 2816 TLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGK 2854 (3550)
T ss_pred HhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 888999999999999999999999998887777766543
No 441
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=63.33 E-value=32 Score=27.85 Aligned_cols=28 Identities=21% Similarity=0.096 Sum_probs=13.8
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 005594 50 DALSYANILRSRNKFVDALALYEIVLEK 77 (689)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 77 (689)
..+..|...+..|++.+|.+.+.++-+.
T Consensus 61 ~al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 61 RALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3444444555555555555555555443
No 442
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=62.03 E-value=14 Score=21.29 Aligned_cols=14 Identities=29% Similarity=0.582 Sum_probs=5.2
Q ss_pred HHHcCCHHHHHHHH
Q 005594 378 YTVQGKMDAAAEMI 391 (689)
Q Consensus 378 ~~~~g~~~~A~~~~ 391 (689)
|.+.|++++|.+.+
T Consensus 10 ~~~~~~~~~a~~~~ 23 (31)
T PF01535_consen 10 YCKMGQFEEALEVF 23 (31)
T ss_pred HHccchHHHHHHHH
Confidence 33333333333333
No 443
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=61.96 E-value=14 Score=21.29 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594 404 AYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (689)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (689)
+|..+-..|.+.|++++|.+.|++..+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3667888999999999999999987653
No 444
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=60.67 E-value=1.8e+02 Score=28.75 Aligned_cols=29 Identities=21% Similarity=0.102 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005594 116 ACAHTHCGILYKDEGRLVEAAESYHKALS 144 (689)
Q Consensus 116 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 144 (689)
.+++...+..|.+.|+-+.|.+.+.+..+
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ 132 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYE 132 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34555555555555555555555554443
No 445
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=60.40 E-value=1.6e+02 Score=28.06 Aligned_cols=56 Identities=18% Similarity=0.207 Sum_probs=32.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CC--CCHHHHHHHHHHHHH-cCCHHHHHHHHHH
Q 005594 195 YNLGVVYSELMQYDTALGCYEKAALE-RP--MYAEAYCNMGVIYKN-RGDLESAIACYER 250 (689)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~-~p--~~~~~~~~la~~~~~-~g~~~~A~~~~~~ 250 (689)
..++.+..+.++|++.+.+.+++++. ++ -+.+-...++.+|.. .|....+...+..
T Consensus 5 v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~s 64 (244)
T smart00101 5 VYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISS 64 (244)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhH
Confidence 44566666777777777777777665 32 344455555555543 3555555555544
No 446
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=60.36 E-value=15 Score=27.34 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=8.6
Q ss_pred CCHHHHHHHHHHHHh
Q 005594 348 DNLDKAVECYQMALS 362 (689)
Q Consensus 348 g~~~~A~~~~~~al~ 362 (689)
|++++|+.+|..+++
T Consensus 20 gny~eA~~lY~~ale 34 (75)
T cd02680 20 GNAEEAIELYTEAVE 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555555554
No 447
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=57.29 E-value=40 Score=33.57 Aligned_cols=141 Identities=11% Similarity=0.072 Sum_probs=67.6
Q ss_pred EEEEecCCcc-cchHHHHHHhhccccCCCceEEEEEeCCCCCChHhHHHHHHhhhcCCceEeC----------CCCCHHH
Q 005594 489 VIGYVSPDYF-THSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDI----------YGIDEKK 557 (689)
Q Consensus 489 riG~~S~d~~-~h~v~~~~~~~~~~~d~~~fev~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 557 (689)
||.++++.+. .--+...+..+.+.+.+..++|++++........ ......+ .++.+ .......
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 74 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGEPPF-YELDPKI-----KVIDLGDKRDSKLLARFKKLRR 74 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCCCCCc-cccCCcc-----ceeecccccccchhccccchHH
Confidence 4666766666 2223333444555555566888888665432010 0001100 11111 1223467
Q ss_pred HHHHHHhCCCcEEEecCCCCCCCchhhhccCCCceEEecccCCCCCC------------CCcccEEeecCCCCCcccccc
Q 005594 558 VAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTG------------LPTIDYRITDSLADPPETKQK 625 (689)
Q Consensus 558 ~~~~i~~d~idilvdl~g~t~~~~~~~~a~r~APvq~~~~G~p~t~g------------~~~~Dy~i~d~~~~p~~~~~~ 625 (689)
+.+.|+..++|+++-..++ ...-+..+..+..|+-+..-+.+.... +...|.+++.....-......
T Consensus 75 ~~~~l~~~~~d~i~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~ 153 (348)
T cd03820 75 LRKLLKNNKPDVVISFLTS-LLTFLASLGLKIVKLIVSEHNSPDAYKKRLRRLLLRRLLYRRADAVVVLTEEDRALYYKK 153 (348)
T ss_pred HHHhhcccCCCEEEEcCch-HHHHHHHHhhccccEEEecCCCccchhhhhHHHHHHHHHHhcCCEEEEeCHHHHHHhhcc
Confidence 8889999999999977766 111222222222254333333332222 345676665432221122334
Q ss_pred CccceeecCCC
Q 005594 626 HVEELIRLPEC 636 (689)
Q Consensus 626 y~E~l~~lp~~ 636 (689)
+..++..+|+.
T Consensus 154 ~~~~~~vi~~~ 164 (348)
T cd03820 154 FNKNVVVIPNP 164 (348)
T ss_pred CCCCeEEecCC
Confidence 45667777764
No 448
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=57.24 E-value=1.9e+02 Score=27.99 Aligned_cols=103 Identities=12% Similarity=0.050 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCH---H
Q 005594 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA---D 301 (689)
Q Consensus 225 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~---~ 301 (689)
.+++.++|..|.+.++.+.+.+.+.+.++..-... .....-.+-..+|.++..+.-.++.++..+..++...+.. .
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg-~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTG-LKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc-cchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 45667777777777777777776666554322111 0111112223344444333344444444444444332211 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005594 302 AMYNLGVAYGEMLKFDMAIVFYELAFH 328 (689)
Q Consensus 302 ~~~~la~~~~~~g~~~~A~~~~~~al~ 328 (689)
.-...|.......++.+|-.++...+.
T Consensus 194 yK~Y~Gi~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 194 YKVYKGIFKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 122233344444455555555544443
No 449
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=56.69 E-value=1.3e+02 Score=29.17 Aligned_cols=102 Identities=17% Similarity=0.070 Sum_probs=67.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCC--CHHHHHhHHHHH---HHhCC----HHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005594 54 YANILRSRNKFVDALALYEIVLEKDSG--NVEAHIGKGICL---QMQNM----GRLAFDSFSEAVKLDPQNACAHTHCGI 124 (689)
Q Consensus 54 ~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~---~~~g~----~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (689)
..+.++..++|++=-..+.+..+...+ ..+..+..+... +.... ...-.+.++.-++..|++..++..+|.
T Consensus 6 ~ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~ 85 (277)
T PF13226_consen 6 DIRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGM 85 (277)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHH
Confidence 567788999999999999988764332 112112222111 11111 124667778888899999999888887
Q ss_pred HHHHcC----------------------CHHHHHHHHHHHHhcCCCCHHHHHH
Q 005594 125 LYKDEG----------------------RLVEAAESYHKALSADPSYKPAAEC 155 (689)
Q Consensus 125 ~~~~~g----------------------~~~~A~~~~~~al~~~p~~~~~~~~ 155 (689)
.+.... -.+.|...+.+++.++|....+...
T Consensus 86 ~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~ 138 (277)
T PF13226_consen 86 YWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIG 138 (277)
T ss_pred HHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Confidence 765421 2567888899999999998776443
No 450
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=56.44 E-value=2.1e+02 Score=28.27 Aligned_cols=30 Identities=23% Similarity=0.269 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594 225 AEAYCNMGVIYKNRGDLESAIACYERCLAV 254 (689)
Q Consensus 225 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 254 (689)
.+++.+.+..|.+.|+-+.|.+.+.+..+.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~k 133 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEK 133 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 567788888888888888888887776654
No 451
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=56.04 E-value=13 Score=34.61 Aligned_cols=34 Identities=24% Similarity=0.466 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHH---------HcCCHHHHHHHHHHHHhcCCCC
Q 005594 402 AEAYNNLGVLYR---------DAGSISLAIDAYEQCLKIDPDS 435 (689)
Q Consensus 402 ~~~~~~la~~~~---------~~g~~~~A~~~~~~al~~~p~~ 435 (689)
+..+...|..+. ..++...|+.++++|++++|+-
T Consensus 169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 345566677663 4568889999999999999874
No 452
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=56.01 E-value=52 Score=27.07 Aligned_cols=26 Identities=23% Similarity=0.155 Sum_probs=14.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594 338 NNLGVIYKDRDNLDKAVECYQMALSI 363 (689)
Q Consensus 338 ~~la~~~~~~g~~~~A~~~~~~al~~ 363 (689)
..+|....+.+++-.++-.|++|+.+
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~ 30 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSL 30 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 44555555566666666666665543
No 453
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.02 E-value=2.5e+02 Score=28.72 Aligned_cols=137 Identities=20% Similarity=0.197 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------CCHH
Q 005594 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH---CAEACNNLGVIYKDRDNLDKAVECYQMALSIKP--------NFSQ 369 (689)
Q Consensus 301 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~ 369 (689)
.++..+|.-|...|+++.|++.|.++-..... ....+.++-.+-...|+|..-..+..++.+.-. -.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 35667888888888888888888886554333 245666777777778888777777777665410 0122
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHH-HH---HcCCHHHHHHHHHHHHhcCCCChh
Q 005594 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAA--------NPTYAEAYNNLGVL-YR---DAGSISLAIDAYEQCLKIDPDSRN 437 (689)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~-~~---~~g~~~~A~~~~~~al~~~p~~~~ 437 (689)
+...-|.+.+.+++|+.|.+++-.+..- .|.+..++..|.-+ -+ .+...-..-..|+..+++.|.-.+
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr~ 310 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQLRE 310 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHHHH
Confidence 4445555666667888888887655332 34444444333211 01 111112233567777777776543
No 454
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=54.81 E-value=2.5e+02 Score=28.71 Aligned_cols=61 Identities=7% Similarity=-0.186 Sum_probs=40.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHH
Q 005594 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182 (689)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~ 182 (689)
.+..+++.++|..|...|+.+....++...............|..+...-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4557888999999999999999875542221111111122234445667889999999986
No 455
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=54.77 E-value=1e+02 Score=33.36 Aligned_cols=81 Identities=17% Similarity=0.143 Sum_probs=66.6
Q ss_pred HHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005594 58 LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAE 137 (689)
Q Consensus 58 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 137 (689)
+.+....+.+....+.-+..........+..+..+-..+..++|-.+|++.+..+|+ ..++..+.-+.+.|-...|..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 95 (578)
T PRK15490 18 LKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQL 95 (578)
T ss_pred HHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHH
Confidence 345566777877777766666666777888888899999999999999999999988 677888888999999988888
Q ss_pred HHH
Q 005594 138 SYH 140 (689)
Q Consensus 138 ~~~ 140 (689)
.++
T Consensus 96 ~~~ 98 (578)
T PRK15490 96 ILK 98 (578)
T ss_pred HHH
Confidence 887
No 456
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=54.43 E-value=22 Score=26.63 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=8.6
Q ss_pred cCCHHHHHHHHHHHHh
Q 005594 347 RDNLDKAVECYQMALS 362 (689)
Q Consensus 347 ~g~~~~A~~~~~~al~ 362 (689)
.|+|++|+.+|..+++
T Consensus 19 ~g~y~eA~~~Y~~aie 34 (76)
T cd02681 19 EGRYSEAVFYYKEAAQ 34 (76)
T ss_pred ccCHHHHHHHHHHHHH
Confidence 4555555555555544
No 457
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.33 E-value=2.6e+02 Score=28.64 Aligned_cols=121 Identities=19% Similarity=0.154 Sum_probs=78.3
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCH
Q 005594 131 RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP---HYAPAYYNLGVVYSELMQY 207 (689)
Q Consensus 131 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~g~~ 207 (689)
+...-.+.++.=++...++.. ....-..+..+|.-|...|+++.|++.|.++-..-. .....+.++-.+-...|+|
T Consensus 125 ~a~~~le~L~~eLk~yK~n~i-KEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw 203 (466)
T KOG0686|consen 125 KAVLKLEKLDNELKSYKDNLI-KESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNW 203 (466)
T ss_pred HHHHHHHHHHHHHHHhhcchh-hHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcch
Confidence 333333444444444333321 222344578899999999999999999998654422 2356677888888889999
Q ss_pred HHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005594 208 DTALGCYEKAALERP--------MYAEAYCNMGVIYKNRGDLESAIACYERCL 252 (689)
Q Consensus 208 ~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al 252 (689)
..-..+..++...-. -.+.+...-|.+...+++|..|.++|-.+.
T Consensus 204 ~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 204 GHVLSYISKAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 888888877765410 112344555666677778888888876653
No 458
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=53.98 E-value=24 Score=26.31 Aligned_cols=17 Identities=35% Similarity=0.722 Sum_probs=13.8
Q ss_pred cCChHHHHHHHHHHHhh
Q 005594 170 AGNTQDGIQKYYEALKI 186 (689)
Q Consensus 170 ~~~~~~A~~~~~~al~~ 186 (689)
.|++++|+.+|..+++.
T Consensus 19 ~gny~eA~~lY~~ale~ 35 (75)
T cd02680 19 KGNAEEAIELYTEAVEL 35 (75)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 38889999999888764
No 459
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=53.82 E-value=29 Score=20.36 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=9.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 005594 374 LGVVYTVQGKMDAAAEMIEKA 394 (689)
Q Consensus 374 la~~~~~~g~~~~A~~~~~~a 394 (689)
+-..|.+.|++++|.+.|++.
T Consensus 6 li~~~~~~~~~~~a~~~~~~M 26 (35)
T TIGR00756 6 LIDGLCKAGRVEEALELFKEM 26 (35)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 333444444444444444443
No 460
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=53.61 E-value=29 Score=20.41 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594 404 AYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (689)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (689)
.|..+-..|.+.|++++|.+.|++..+.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 3567778899999999999999988653
No 461
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.36 E-value=3.6e+02 Score=30.05 Aligned_cols=104 Identities=11% Similarity=-0.105 Sum_probs=60.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 005594 307 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 386 (689)
Q Consensus 307 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 386 (689)
..-+...|+..+|.++-++. .-.+-..|......+...+++++-.++-+. . ..|--+.=.-.+..+.|+.++
T Consensus 691 v~~li~~g~~k~a~ql~~~F---kipdKr~~wLk~~aLa~~~kweeLekfAks---k--ksPIGy~PFVe~c~~~~n~~E 762 (829)
T KOG2280|consen 691 VTTLILIGQNKRAEQLKSDF---KIPDKRLWWLKLTALADIKKWEELEKFAKS---K--KSPIGYLPFVEACLKQGNKDE 762 (829)
T ss_pred HHHHHHccchHHHHHHHHhc---CCcchhhHHHHHHHHHhhhhHHHHHHHHhc---c--CCCCCchhHHHHHHhcccHHH
Confidence 33445567766666654432 122344555566666677777665544322 1 113344445566777888888
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005594 387 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYE 426 (689)
Q Consensus 387 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 426 (689)
|.+++-+.- +.. .....|.+.|++.+|.+.--
T Consensus 763 A~KYiprv~----~l~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 763 AKKYIPRVG----GLQ----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HhhhhhccC----ChH----HHHHHHHHhccHHHHHHHHH
Confidence 888776652 222 55677777888888776543
No 462
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=53.08 E-value=91 Score=34.27 Aligned_cols=183 Identities=20% Similarity=0.210 Sum_probs=94.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH------HHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhC-
Q 005594 224 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI------AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN- 296 (689)
Q Consensus 224 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~- 296 (689)
.++...++-..|....+|+.-+++.+..-.+ |+... ..+.++.++.+. ...|+-++|+...-.+++..
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRR----Nr~GDRakAL~~~l~lve~eg 274 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRR----NRPGDRAKALNTVLPLVEKEG 274 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhccc----CCCccHHHHHHHHHHHHHhcC
Confidence 4677778888888888998888777665443 42111 111122222221 23577888888777777654
Q ss_pred CCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCC
Q 005594 297 WHYADAMYNLGVAYGE---------MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN-LDKAVECYQMALSIKPN 366 (689)
Q Consensus 297 ~~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~ 366 (689)
+-.++.+...|.+|.. .+..+.|++.|+++.+..|... .-.+++.++...|+ ++...+.-.
T Consensus 275 ~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~-sGIN~atLL~aaG~~Fens~Elq~-------- 345 (1226)
T KOG4279|consen 275 PVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY-SGINLATLLRAAGEHFENSLELQQ-------- 345 (1226)
T ss_pred CCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh-ccccHHHHHHHhhhhccchHHHHH--------
Confidence 3345566666666543 2345566777777776666421 12234444443332 222222111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005594 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (689)
Q Consensus 367 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (689)
+-..|+.++.+.|..++-.++++-+. ++ .+-.-.+++.+|++.-++..++.|-.
T Consensus 346 ---IgmkLn~LlgrKG~leklq~YWdV~~---------y~---~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 346 ---IGMKLNSLLGRKGALEKLQEYWDVAT---------YF---EASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred ---HHHHHHHHhhccchHHHHHHHHhHHH---------hh---hhhhhccCHHHHHHHHHHHhccCCce
Confidence 11223334444444444333333221 10 11223567777888777777777754
No 463
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=52.75 E-value=29 Score=26.15 Aligned_cols=14 Identities=21% Similarity=0.342 Sum_probs=6.7
Q ss_pred CCHHHHHHHHHHHH
Q 005594 382 GKMDAAAEMIEKAI 395 (689)
Q Consensus 382 g~~~~A~~~~~~al 395 (689)
|+.++|+.+|++++
T Consensus 22 g~~e~Al~~Y~~gi 35 (79)
T cd02679 22 GDKEQALAHYRKGL 35 (79)
T ss_pred CCHHHHHHHHHHHH
Confidence 44444544444443
No 464
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=52.75 E-value=69 Score=33.14 Aligned_cols=104 Identities=18% Similarity=0.137 Sum_probs=56.3
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC----C---H-H--HHH------hHHHHHH-HhCC-----HHHHHHHH
Q 005594 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSG----N---V-E--AHI------GKGICLQ-MQNM-----GRLAFDSF 105 (689)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~---~-~--~~~------~la~~~~-~~g~-----~~~A~~~~ 105 (689)
....++.|..++..|+|.+|+..|+.+|..-|- + . + -+. .+|.... .... .++....+
T Consensus 204 L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~l 283 (422)
T PF06957_consen 204 LEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNL 283 (422)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHH
Confidence 445788999999999999999999999875221 1 1 1 111 1222211 1111 11222222
Q ss_pred HHHH-----HcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 005594 106 SEAV-----KLDPQNAC-AHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151 (689)
Q Consensus 106 ~~al-----~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 151 (689)
+-+. ++.|.+.. ++..--...++.++|..|....++.+++.|....
T Consensus 284 ELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~ 335 (422)
T PF06957_consen 284 ELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEV 335 (422)
T ss_dssp HHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHH
Confidence 2221 12222221 2222234556789999999999999999887543
No 465
>PRK12798 chemotaxis protein; Reviewed
Probab=52.45 E-value=2.8e+02 Score=28.56 Aligned_cols=30 Identities=13% Similarity=-0.109 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005594 191 APAYYNLGVVYSELMQYDTALGCYEKAALE 220 (689)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 220 (689)
...|..++..-...|+.+-|.-.-++++.+
T Consensus 257 ~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L 286 (421)
T PRK12798 257 RELYLRIARAALIDGKTELARFASERALKL 286 (421)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 344555555555555555555555555544
No 466
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=51.70 E-value=28 Score=26.25 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=8.3
Q ss_pred CCHHHHHHHHHHHHh
Q 005594 348 DNLDKAVECYQMALS 362 (689)
Q Consensus 348 g~~~~A~~~~~~al~ 362 (689)
|+.++|+.+|++++.
T Consensus 22 g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 22 GDKEQALAHYRKGLR 36 (79)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555544
No 467
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=51.66 E-value=25 Score=32.83 Aligned_cols=94 Identities=17% Similarity=0.109 Sum_probs=55.6
Q ss_pred HHHhCCCHHHHHHHHHHHHHhC---CCC---------HHHHHhHHHHHHHhCCHHH--HHHHHHHHHHc--CCCC--HHH
Q 005594 57 ILRSRNKFVDALALYEIVLEKD---SGN---------VEAHIGKGICLQMQNMGRL--AFDSFSEAVKL--DPQN--ACA 118 (689)
Q Consensus 57 ~~~~~g~~~~A~~~~~~~l~~~---p~~---------~~~~~~la~~~~~~g~~~~--A~~~~~~al~~--~p~~--~~~ 118 (689)
-++..|+|+.|+++.+-+++.+ |++ ++-...-+......|+.-+ -...+..+... -|+. ...
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl 171 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKL 171 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHH
Confidence 3467799999999999999864 332 1222233334444454211 11222222211 1333 334
Q ss_pred HHHHHHHHH---------HcCCHHHHHHHHHHHHhcCCCCH
Q 005594 119 HTHCGILYK---------DEGRLVEAAESYHKALSADPSYK 150 (689)
Q Consensus 119 ~~~la~~~~---------~~g~~~~A~~~~~~al~~~p~~~ 150 (689)
+...|..+. ..++...|+.+++++++++|+..
T Consensus 172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence 556667663 45688899999999999998843
No 468
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=51.52 E-value=3.1e+02 Score=28.71 Aligned_cols=90 Identities=16% Similarity=0.133 Sum_probs=60.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH
Q 005594 340 LGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYR 413 (689)
Q Consensus 340 la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~ 413 (689)
.........+.+++..++-+.-.. |+. +.....+.+.+.+.|..++++..++.=+.. .|++ -....|-..+.
T Consensus 72 fvn~~~~~~~~d~~~~~L~k~R~s-~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~-~s~n~Lmd~fl 149 (429)
T PF10037_consen 72 FVNNVESKDDLDEVEDVLYKFRHS-PNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN-FSFNLLMDHFL 149 (429)
T ss_pred HHhhcCCHhHHHHHHHHHHHHHcC-cccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh-hhHHHHHHHHh
Confidence 333334444566677666654332 222 234457777889999999999998876553 5664 34556677889
Q ss_pred HcCCHHHHHHHHHHHHhc
Q 005594 414 DAGSISLAIDAYEQCLKI 431 (689)
Q Consensus 414 ~~g~~~~A~~~~~~al~~ 431 (689)
+.|++..|.+........
T Consensus 150 ~~~~~~~A~~V~~~~~lQ 167 (429)
T PF10037_consen 150 KKGNYKSAAKVATEMMLQ 167 (429)
T ss_pred hcccHHHHHHHHHHHHHh
Confidence 999999999988776543
No 469
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=50.63 E-value=65 Score=35.58 Aligned_cols=104 Identities=16% Similarity=0.110 Sum_probs=83.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCC----CHHHHHhHHHHHHH--hCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005594 51 ALSYANILRSRNKFVDALALYEIVLEKDSG----NVEAHIGKGICLQM--QNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (689)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (689)
....++.+++.+++..|.--|..++..-|. ........+.++.. .|++.+++.-..-++...|....++...+.
T Consensus 56 ~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~ 135 (748)
T KOG4151|consen 56 LKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRAR 135 (748)
T ss_pred HHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhh
Confidence 445677788888999987778777777663 23445556666654 468999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 005594 125 LYKDEGRLVEAAESYHKALSADPSYKPAAE 154 (689)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 154 (689)
+|...+.++-|++...-.....|.+..+..
T Consensus 136 ~y~al~k~d~a~rdl~i~~~~~p~~~~~~e 165 (748)
T KOG4151|consen 136 KYEALNKLDLAVRDLRIVEKMDPSNVSASE 165 (748)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Confidence 999999999999998888888998866543
No 470
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=50.46 E-value=1.6e+02 Score=31.90 Aligned_cols=79 Identities=10% Similarity=0.112 Sum_probs=48.7
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005594 312 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 391 (689)
Q Consensus 312 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 391 (689)
+....+.+....+.-+.-........+..+..+...++.++|-.+|++.+..+|+ +.+...+.-+.+.|-...|...+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 97 (578)
T PRK15490 20 QEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLIL 97 (578)
T ss_pred HHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHH
Confidence 3444555555555544444444555566666666667777777777777776666 55566666666666666666666
Q ss_pred H
Q 005594 392 E 392 (689)
Q Consensus 392 ~ 392 (689)
+
T Consensus 98 ~ 98 (578)
T PRK15490 98 K 98 (578)
T ss_pred H
Confidence 5
No 471
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=49.30 E-value=2.8e+02 Score=27.49 Aligned_cols=157 Identities=11% Similarity=0.021 Sum_probs=92.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhCCHHHHHHHHHHHH----HcCCCCHHHHHHHHHHH
Q 005594 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV----KLDPQNACAHTHCGILY 126 (689)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al----~~~p~~~~~~~~la~~~ 126 (689)
.+..-+..+.++++.+.++..++.+..+|--.+.++..+.++.++| ++.+.+.....+ +.-|.-... .
T Consensus 102 ~~~~~~~~~~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~~L-------~ 173 (301)
T TIGR03362 102 RVADYQELLAQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLLEL-------K 173 (301)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChhhc-------c
Confidence 3344444458889999999999999999998999999999999999 455555544433 333321110 0
Q ss_pred HHcCC---HHHHHHHHHHHHh-----------cCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHH-h-hCCC-
Q 005594 127 KDEGR---LVEAAESYHKALS-----------ADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL-K-IDPH- 189 (689)
Q Consensus 127 ~~~g~---~~~A~~~~~~al~-----------~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al-~-~~~~- 189 (689)
+..|. -++....+..... ..+...+. . ....-+......+..+.|+..++..+ . ..|.
T Consensus 174 F~DGtPFad~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~ 248 (301)
T TIGR03362 174 FSDGTPFADDETRAWLAQHATRSNAASVAPVAEVGEESDW-E----ELREEARALAAEGGLEAALQRLQQRLAQAREPRE 248 (301)
T ss_pred cCCCCCCCCHHHHHHHHhcccccccccccccccCcccccH-H----HHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHH
Confidence 01110 0011111111000 00100111 0 02233455566788889999888742 2 3333
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005594 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALE 220 (689)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 220 (689)
.......++.++...|.++-|...|+.+.+.
T Consensus 249 rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 249 RFHWRLLLARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455677788889999999999999888654
No 472
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=49.18 E-value=2.8e+02 Score=27.48 Aligned_cols=147 Identities=13% Similarity=0.000 Sum_probs=91.4
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hCCCCHHHHHHHHHHHHHcCC---HH
Q 005594 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH----FNPHCAEACNNLGVIYKDRDN---LD 351 (689)
Q Consensus 279 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~g~---~~ 351 (689)
.+++.+.++..++.+..+|--.+..+..+.++.++|. +.+.......+. .-|.-... .+..|- -+
T Consensus 112 ~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG~-~~~a~aI~~el~~fL~RlP~L~~L-------~F~DGtPFad~ 183 (301)
T TIGR03362 112 QADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLGY-AAVAQAIRDELAAFLERLPGLLEL-------KFSDGTPFADD 183 (301)
T ss_pred CCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhCcChhhc-------ccCCCCCCCCH
Confidence 5677889999999999899888999999999999994 555554444332 23321111 111110 01
Q ss_pred HHHHHHHHHHh-----------cCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHc
Q 005594 352 KAVECYQMALS-----------IKP--NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNLGVLYRDA 415 (689)
Q Consensus 352 ~A~~~~~~al~-----------~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~ 415 (689)
+-..++..... ..+ ........-+..+...+..++|+..++..+...++- ......+++++...
T Consensus 184 ~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~ 263 (301)
T TIGR03362 184 ETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQA 263 (301)
T ss_pred HHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHc
Confidence 11222211100 001 112223344667788899999999999866543322 34556788999999
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 005594 416 GSISLAIDAYEQCLKIDP 433 (689)
Q Consensus 416 g~~~~A~~~~~~al~~~p 433 (689)
|.++-|...|++..+.-.
T Consensus 264 g~~~lA~~ll~~L~~~~~ 281 (301)
T TIGR03362 264 GKAELAQQLYAALDQQIQ 281 (301)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999999999998877543
No 473
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.99 E-value=2.8e+02 Score=27.57 Aligned_cols=39 Identities=13% Similarity=0.225 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 005594 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (689)
Q Consensus 223 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 261 (689)
.++.+-+..+..+.-.+++.++...+.+..-+.|+....
T Consensus 211 ~npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd~~~~ 249 (449)
T COG3014 211 LNPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQDQSPF 249 (449)
T ss_pred chHHHHHHHHHhcccCccHhHHHHHHHHHhccCchhhHH
Confidence 346666677777788888899999999888888875443
No 474
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=48.51 E-value=1.1e+02 Score=22.78 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=10.3
Q ss_pred HHHHHHcCChHHHHHHHHHHH
Q 005594 164 GTSLKLAGNTQDGIQKYYEAL 184 (689)
Q Consensus 164 ~~~~~~~~~~~~A~~~~~~al 184 (689)
+.-+-..|++++|+.+|++++
T Consensus 13 AVe~D~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 13 AVKAEKEGNAEDAITNYKKAI 33 (75)
T ss_pred HHHHHhcCCHHHHHHHHHHHH
Confidence 333344455555555554443
No 475
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=48.32 E-value=53 Score=19.23 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=9.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 005594 373 NLGVVYTVQGKMDAAAEMIEKA 394 (689)
Q Consensus 373 ~la~~~~~~g~~~~A~~~~~~a 394 (689)
.+..++.+.|+++.|...++..
T Consensus 6 ~ll~a~~~~g~~~~a~~~~~~M 27 (34)
T PF13812_consen 6 ALLRACAKAGDPDAALQLFDEM 27 (34)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3344444444444444444443
No 476
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=47.57 E-value=56 Score=32.42 Aligned_cols=95 Identities=17% Similarity=0.237 Sum_probs=52.1
Q ss_pred CCCCeEEEEecCCcccchHHHHHHhhccccCCCceEEEEEeCCCCCChHhHHHHHHhhhcCCceEeC---CCCCH-----
Q 005594 484 PERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDI---YGIDE----- 555 (689)
Q Consensus 484 ~~~~lriG~~S~d~~~h~v~~~~~~~~~~~d~~~fev~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~----- 555 (689)
.++++|||.+.+.+...-+..-+. .-..+|+.+.+... -|.....+++..-.. ++-++. +.+.+
T Consensus 14 ~G~PiRVGlIGAG~mG~~ivtQi~------~m~Gm~vvaisd~~-~~~ak~A~~~ag~~~-~~~~e~~~~s~~a~Ai~aG 85 (438)
T COG4091 14 EGKPIRVGLIGAGEMGTGIVTQIA------SMPGMEVVAISDRN-LDAAKRAYDRAGGPK-IEAVEADDASKMADAIEAG 85 (438)
T ss_pred cCCceEEEEecccccchHHHHHHh------hcCCceEEEEeccc-chHHHHHHHHhcCCc-ccccccchhhHHHHHHhcC
Confidence 478999999988877654332111 22568999887543 233333333211000 011111 11111
Q ss_pred -----HHHHHHHHhCCCcEEEecCCCCC-CCchhhhc
Q 005594 556 -----KKVAAMVREDKIDILVELTGHTA-NNKLGMMA 586 (689)
Q Consensus 556 -----~~~~~~i~~d~idilvdl~g~t~-~~~~~~~a 586 (689)
++.-..|..|.||+.||-.|+.. |.+..+-|
T Consensus 86 Ki~vT~D~~~i~~~~~IdvIIdATG~p~vGA~~~l~A 122 (438)
T COG4091 86 KIAVTDDAELIIANDLIDVIIDATGVPEVGAKIALEA 122 (438)
T ss_pred cEEEecchhhhhcCCcceEEEEcCCCcchhhHhHHHH
Confidence 23556788999999999999754 44554443
No 477
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=47.51 E-value=1.7e+02 Score=24.50 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594 318 MAIVFYELAFHF--NPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360 (689)
Q Consensus 318 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 360 (689)
.+.+.|+.+... ....+..|...|..+...|++++|.+.|+++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 444444444432 2333445555555555555555555555443
No 478
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=47.31 E-value=41 Score=33.45 Aligned_cols=59 Identities=14% Similarity=-0.029 Sum_probs=45.1
Q ss_pred ccCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--------CCHHHHHhHHHHHHHhCCHHHHH
Q 005594 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDS--------GNVEAHIGKGICLQMQNMGRLAF 102 (689)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~ 102 (689)
.......++..|+..+.++++++|...|..+..+.. ++.++++.+|..++..++.+..+
T Consensus 37 ~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 37 KEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred HHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445678899999999999999999999999887532 24567777777777777665544
No 479
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=47.25 E-value=37 Score=25.38 Aligned_cols=29 Identities=10% Similarity=0.130 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005594 48 GKDALSYANILRSRNKFVDALALYEIVLE 76 (689)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 76 (689)
+-.+...|..+-..|+|++|+.+|..+++
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34556666667777777777777776655
No 480
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=46.87 E-value=67 Score=29.25 Aligned_cols=49 Identities=20% Similarity=0.241 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005594 208 DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257 (689)
Q Consensus 208 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 257 (689)
+..++..++.++..|+ +..+..++.++...|+.++|....+++....|.
T Consensus 128 ~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 128 EAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 3445555666666664 778888888888888888888888888888884
No 481
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=46.50 E-value=45 Score=24.22 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=17.0
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005594 50 DALSYANILRSRNKFVDALALYEIVLE 76 (689)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~ 76 (689)
.++..|..+-..|++++|+.+|.++++
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455566666666777766666666554
No 482
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=46.40 E-value=40 Score=28.27 Aligned_cols=82 Identities=20% Similarity=0.126 Sum_probs=47.0
Q ss_pred hHHHHHHhhccccCCCceEEEEEeCCCCCChHhHHHHHHhhhcCCceEeCCC---------------------CCHHHHH
Q 005594 501 SVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYG---------------------IDEKKVA 559 (689)
Q Consensus 501 ~v~~~~~~~~~~~d~~~fev~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~ 559 (689)
++|.-...+++.| +++|+|++.+.+..-+.+.+..+. +...++-+.+ ..++.+.
T Consensus 9 SIG~qtLdVi~~~-~d~f~v~~Lsa~~n~~~L~~q~~~----f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~~~l~ 83 (129)
T PF02670_consen 9 SIGTQTLDVIRKH-PDKFEVVALSAGSNIEKLAEQARE----FKPKYVVIADEEAYEELKKALPSKGPGIEVLSGPEGLE 83 (129)
T ss_dssp HHHHHHHHHHHHC-TTTEEEEEEEESSTHHHHHHHHHH----HT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESHHHHH
T ss_pred HHHHHHHHHHHhC-CCceEEEEEEcCCCHHHHHHHHHH----hCCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeChHHHH
Confidence 5666666777776 678999988765444433332222 1123333321 1345577
Q ss_pred HHHHhCCCcEEEecCCCCCCCchhhhcc
Q 005594 560 AMVREDKIDILVELTGHTANNKLGMMAC 587 (689)
Q Consensus 560 ~~i~~d~idilvdl~g~t~~~~~~~~a~ 587 (689)
+.+...++|++|.....+.|-++.+.|.
T Consensus 84 ~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai 111 (129)
T PF02670_consen 84 ELAEEPEVDIVVNAIVGFAGLKPTLAAI 111 (129)
T ss_dssp HHHTHTT-SEEEE--SSGGGHHHHHHHH
T ss_pred HHhcCCCCCEEEEeCcccchHHHHHHHH
Confidence 7888899999998777766666555443
No 483
>PRK12798 chemotaxis protein; Reviewed
Probab=45.79 E-value=3.6e+02 Score=27.84 Aligned_cols=199 Identities=14% Similarity=0.012 Sum_probs=97.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHH
Q 005594 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALE-RPMYAEAYCNMGV-IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267 (689)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 267 (689)
+.+.-..-|..-+-.|+-.++.+.+...-.. .|.....+..|.. ......+..+|+..|+.+--..|....--
T Consensus 111 ~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEE----- 185 (421)
T PRK12798 111 NFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEE----- 185 (421)
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHH-----
Confidence 3444455566666677777777776654221 1222223333322 23445567777777777766666532100
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHH
Q 005594 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE---ACNNLGVIY 344 (689)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~ 344 (689)
.++..-..+..+.|+.+++..+-.+.+.....++. .+.......
T Consensus 186 ---------------------------------AALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~ 232 (421)
T PRK12798 186 ---------------------------------AALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLV 232 (421)
T ss_pred ---------------------------------HHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence 11222222334455555555554444444333322 222222222
Q ss_pred HHcCCHHHHHHHHHHHHhc-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCH
Q 005594 345 KDRDNLDKAVECYQMALSI-KPNF-SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT----YAEAYNNLGVLYRDAGSI 418 (689)
Q Consensus 345 ~~~g~~~~A~~~~~~al~~-~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~ 418 (689)
.+.++-.. .+.+...+.. +|.. ..+|..++..-...|+.+-|.-.-++++.+... ...+...-+....-..++
T Consensus 233 ~~~~d~~~-~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~ 311 (421)
T PRK12798 233 VRLDDEIR-DARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDA 311 (421)
T ss_pred Hhcccccc-HHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccH
Confidence 22221111 1223344433 3332 456777777777778888887777777777432 233333334444445566
Q ss_pred HHHHHHHHH
Q 005594 419 SLAIDAYEQ 427 (689)
Q Consensus 419 ~~A~~~~~~ 427 (689)
++|++.+.+
T Consensus 312 ~~al~~L~~ 320 (421)
T PRK12798 312 ESALEELSQ 320 (421)
T ss_pred HHHHHHHhc
Confidence 666665543
No 484
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=45.51 E-value=1.1e+02 Score=21.80 Aligned_cols=58 Identities=17% Similarity=0.139 Sum_probs=37.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHH
Q 005594 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQK 179 (689)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~ 179 (689)
..+..+...|+|=+|-+.++.+-...+.. ......+.+....|....+.|+...|...
T Consensus 4 ~~~~~l~n~g~f~EaHEvlE~~W~~~~~~-~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 4 EEGIELFNAGDFFEAHEVLEELWKAAPGP-ERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCCT-CC-HHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHcCCCHHHhHHHHHHHHHHCCcc-hHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 34566777888888888888887655544 44444455555566666777777776654
No 485
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=44.97 E-value=1.3e+02 Score=22.54 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=21.3
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005594 48 GKDALSYANILRSRNKFVDALALYEIVLE 76 (689)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 76 (689)
+-.++..|..+-..|+|++|+.+|.++++
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45567777777778888888887777665
No 486
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=44.89 E-value=7.2 Score=42.12 Aligned_cols=97 Identities=11% Similarity=-0.053 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHH
Q 005594 191 APAYYNLGVVYSELMQYDTALGCYEKAAL--ERP-MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267 (689)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 267 (689)
...+..-+..+...|++..|...+.+.-. +.+ .........+.+....|++++|+..+... ....- .......
T Consensus 24 ~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~-~~~~l---~~~~~~~ 99 (536)
T PF04348_consen 24 AQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQ-DLWQL---PPEQQAR 99 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccC-CcccC---CHHHHHH
Confidence 44556667788888888888888887652 222 23455566778888888888888887641 11110 0111122
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHH
Q 005594 268 ALTDLGTKVKLEGDINQGVAYYKK 291 (689)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~ 291 (689)
.+...+.++...|++-+|...+-.
T Consensus 100 ~~~l~A~a~~~~~~~l~Aa~~~i~ 123 (536)
T PF04348_consen 100 YHQLRAQAYEQQGDPLAAARERIA 123 (536)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Confidence 333445555555666555554433
No 487
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=42.71 E-value=63 Score=35.70 Aligned_cols=98 Identities=21% Similarity=0.267 Sum_probs=53.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005594 307 GVAYGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYKD--RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380 (689)
Q Consensus 307 a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 380 (689)
+..+++.+++..|.--|..++.+-|.+ .....+.+.++.. .|++.+++.-..-++...|....++...+.+|..
T Consensus 60 ~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~a 139 (748)
T KOG4151|consen 60 GNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEA 139 (748)
T ss_pred hhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHH
Confidence 555555566666655555555554422 2333344444433 3456666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHH
Q 005594 381 QGKMDAAAEMIEKAIAANPTYAEA 404 (689)
Q Consensus 381 ~g~~~~A~~~~~~al~~~p~~~~~ 404 (689)
.++++-|++.+.-.....|.+..+
T Consensus 140 l~k~d~a~rdl~i~~~~~p~~~~~ 163 (748)
T KOG4151|consen 140 LNKLDLAVRDLRIVEKMDPSNVSA 163 (748)
T ss_pred HHHHHHHHHHHHHHhcCCCCcchH
Confidence 666666666555555555555433
No 488
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=41.72 E-value=2.2e+02 Score=24.14 Aligned_cols=57 Identities=12% Similarity=0.105 Sum_probs=40.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005594 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (689)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 255 (689)
.+...+|+-++-.+.+....+....+++.+..+|.+|.+.|+..++.+.+.+|-+..
T Consensus 94 d~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 345677787887788888776666789999999999999999999999999987653
No 489
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.58 E-value=4.2e+02 Score=27.43 Aligned_cols=150 Identities=17% Similarity=0.038 Sum_probs=0.0
Q ss_pred CCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 005594 256 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 335 (689)
Q Consensus 256 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 335 (689)
|.....-..++..+...+........|.+|+.++-.+- +--..+-.+.++.-.+.+.
T Consensus 153 ppsE~kAlmmglg~hekaRa~m~re~y~eAl~~LleAD-----------------------e~F~~Cd~klLe~VDNyal 209 (568)
T KOG2561|consen 153 PPSEQKALMMGLGLHEKARAAMEREMYSEALLVLLEAD-----------------------ESFSLCDSKLLELVDNYAL 209 (568)
T ss_pred ChhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh-----------------------HHHHhhhHHHHHhhcchhh
Q ss_pred HHHHHHHHHHHcC----------CHHHHHHHHHHHHhcC---------CCCHH------HHHHHHHHHHHcCCHHHHHHH
Q 005594 336 ACNNLGVIYKDRD----------NLDKAVECYQMALSIK---------PNFSQ------SLNNLGVVYTVQGKMDAAAEM 390 (689)
Q Consensus 336 ~~~~la~~~~~~g----------~~~~A~~~~~~al~~~---------p~~~~------~~~~la~~~~~~g~~~~A~~~ 390 (689)
....+.+||+.+. +...|.+.|.++.-.+ +..++ .+..-|.+.+.+|+-++|.++
T Consensus 210 lnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~ 289 (568)
T KOG2561|consen 210 LNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEA 289 (568)
T ss_pred hhcchhheehhhcccccCChHHHHHHHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHH
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005594 391 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (689)
Q Consensus 391 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (689)
++.+...--...-....+..+...-=...+|.-.++.+
T Consensus 290 le~a~~~l~elki~d~~lsllv~mGfeesdaRlaLRsc 327 (568)
T KOG2561|consen 290 LESAHAKLLELKINDETLSLLVGMGFEESDARLALRSC 327 (568)
T ss_pred HHHHHHHHHHeeccchHHHHHHHcCCCchHHHHHHHhc
No 490
>PF11897 DUF3417: Protein of unknown function (DUF3417); InterPro: IPR024517 This domain of unknown function is found at the N terminus of members of the glycogen phosphorylase family.
Probab=41.40 E-value=1.3e+02 Score=24.92 Aligned_cols=42 Identities=21% Similarity=0.214 Sum_probs=25.1
Q ss_pred HHHHHHHHHhhhccccccCCCCCCCCCCeEEEEecCCcccch
Q 005594 460 AHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHS 501 (689)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lriG~~S~d~~~h~ 501 (689)
..+.....+..-....+.|-..+.....-.|+|+|..|.-|-
T Consensus 75 ~~~~v~~~f~~Ym~~~~~W~~~~~~~~~~~IAYFSmEfGlhe 116 (118)
T PF11897_consen 75 RYDRVYARFEEYMSQKPTWFQEPGDTPNPPIAYFSMEFGLHE 116 (118)
T ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCCCEEEEcccccccc
Confidence 333344444443333355655533345678999999998874
No 491
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.20 E-value=3.5e+02 Score=30.82 Aligned_cols=121 Identities=17% Similarity=0.164 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHh----------CCCCHHHHHhHHHHH------------HHhCCHHHH--HHH
Q 005594 49 KDALSYANILRSRNKFVDALALYEIVLEK----------DSGNVEAHIGKGICL------------QMQNMGRLA--FDS 104 (689)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----------~p~~~~~~~~la~~~------------~~~g~~~~A--~~~ 104 (689)
...++.|..+...|++.+|++.|+.++-. +...+..+...+.-| +.....+.+ +..
T Consensus 992 ~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAa 1071 (1202)
T KOG0292|consen 992 NKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAA 1071 (1202)
T ss_pred HHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHH
Q ss_pred HHHHHHcCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHH
Q 005594 105 FSEAVKLDPQNACAHTHCG-ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA 183 (689)
Q Consensus 105 ~~~al~~~p~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~a 183 (689)
|-.-..+.|-+...-...| ..+++.+++..|.....+.+++.|. +...+.......+
T Consensus 1072 YFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~----------------------~~~A~q~rki~~a 1129 (1202)
T KOG0292|consen 1072 YFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPS----------------------PPVAEQARKIKQA 1129 (1202)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC----------------------ChHHHHHHHHHHH
Q ss_pred HhhCCCCH
Q 005594 184 LKIDPHYA 191 (689)
Q Consensus 184 l~~~~~~~ 191 (689)
-+.+|.+.
T Consensus 1130 ~eknp~Da 1137 (1202)
T KOG0292|consen 1130 AEKNPTDA 1137 (1202)
T ss_pred hhcCcccc
No 492
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.91 E-value=6.9e+02 Score=29.70 Aligned_cols=168 Identities=16% Similarity=0.104 Sum_probs=96.3
Q ss_pred HHHHHhHHHHHHHhCCHHHHHHHHHHHHHcCCC-------------------------C----HHHHHHHHHHHHHcCCH
Q 005594 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ-------------------------N----ACAHTHCGILYKDEGRL 132 (689)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------------------------~----~~~~~~la~~~~~~g~~ 132 (689)
....+.+|.+|...|+..+|+.+|.++..-... . ...|...-+++..-+-.
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~ 999 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHA 999 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccH
Confidence 456677888888999999999999888753110 0 12333444556667777
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHH
Q 005594 133 VEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDT 209 (689)
Q Consensus 133 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~ 209 (689)
+.+.+...+|++.-|++... .+.+...+-+-....|.+.+|...+- .+|+. ...+..+-.++++.|+++.
T Consensus 1000 E~vcQlA~~AIe~l~dd~ps---~a~~~t~vFnhhldlgh~~qAy~ai~----~npdserrrdcLRqlvivLfecg~l~~ 1072 (1480)
T KOG4521|consen 1000 EEVCQLAVKAIENLPDDNPS---VALISTTVFNHHLDLGHWFQAYKAIL----RNPDSERRRDCLRQLVIVLFECGELEA 1072 (1480)
T ss_pred HHHHHHHHHHHHhCCCcchh---HHHHHHHHHHhhhchhhHHHHHHHHH----cCCcHHHHHHHHHHHHHHHHhccchHH
Confidence 77777777777765554433 23334444455566677777765432 34542 2345556666677666543
Q ss_pred ------------HHH-HHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCC
Q 005594 210 ------------ALG-CYEKAALERPMY-AEAYCNMGVIYKNRGDLESAIA-CYERCLAVSP 256 (689)
Q Consensus 210 ------------A~~-~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~~ 256 (689)
-.. +++.+-...|.. ...|..|--.+...+++.+|-. .|+.+..+..
T Consensus 1073 L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~s 1134 (1480)
T KOG4521|consen 1073 LATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLES 1134 (1480)
T ss_pred HhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhcc
Confidence 222 333333333322 2334444445566777776654 4566655543
No 493
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=40.72 E-value=1.5e+02 Score=22.16 Aligned_cols=14 Identities=43% Similarity=0.693 Sum_probs=5.9
Q ss_pred cCCHHHHHHHHHHH
Q 005594 129 EGRLVEAAESYHKA 142 (689)
Q Consensus 129 ~g~~~~A~~~~~~a 142 (689)
.|++++|+.+|.++
T Consensus 19 ~g~y~eAl~~Y~~a 32 (77)
T cd02683 19 EGRFQEALVCYQEG 32 (77)
T ss_pred hccHHHHHHHHHHH
Confidence 44444444444333
No 494
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=40.07 E-value=1.4e+02 Score=24.17 Aligned_cols=48 Identities=13% Similarity=0.073 Sum_probs=29.2
Q ss_pred HHHhHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 005594 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR 131 (689)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 131 (689)
.....|...+..|++..|.+.+.++-+..+...-.+..-+.....+||
T Consensus 61 ~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 61 RALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 344556666677777777777777766654444455544555555543
No 495
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=39.89 E-value=2.1e+02 Score=25.05 Aligned_cols=93 Identities=22% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHh-------CCCCH--------------------------------HHHHhHHHHH
Q 005594 52 LSYANILRSRNKFVDALALYEIVLEK-------DSGNV--------------------------------EAHIGKGICL 92 (689)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~~-------~p~~~--------------------------------~~~~~la~~~ 92 (689)
...|+..+..|+.++|...+.++... +|... ......+.-.
T Consensus 6 i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~~ 85 (155)
T PF10938_consen 6 IQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANEL 85 (155)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHHH
Q ss_pred HHhCCHHHHHHHHHHHHH--------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005594 93 QMQNMGRLAFDSFSEAVK--------LDPQNACAHTHCGILYKDEGRLVEAAESYHKALS 144 (689)
Q Consensus 93 ~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 144 (689)
++.|+.+.|.+.++.+-. +-=.....-...+..+...|++.+|...+..++.
T Consensus 86 l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 86 LKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
No 496
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.59 E-value=7.2e+02 Score=29.55 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005594 191 APAYYNLGVVYSELMQYDTALGCYEKAALE 220 (689)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 220 (689)
+...+.+|.+|...|+..+|+.+|.++..-
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg 949 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSG 949 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhc
Confidence 445667888889999999999999888653
No 497
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=39.03 E-value=51 Score=24.59 Aligned_cols=34 Identities=21% Similarity=0.226 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005594 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 363 (689)
Q Consensus 315 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 363 (689)
..++|+.+..++++.+.. |++++|+.+|..+++.
T Consensus 2 ~l~~Ai~lv~~Av~~D~~---------------g~y~eA~~lY~~ale~ 35 (75)
T cd02684 2 SLEKAIALVVQAVKKDQR---------------GDAAAALSLYCSALQY 35 (75)
T ss_pred cHHHHHHHHHHHHHHHHh---------------ccHHHHHHHHHHHHHH
No 498
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=38.60 E-value=1.8e+02 Score=30.25 Aligned_cols=29 Identities=14% Similarity=0.075 Sum_probs=22.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 005594 410 VLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (689)
Q Consensus 410 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (689)
...++.++|..|..+-++.|++.|....+
T Consensus 308 ~~~~K~KNf~tAa~FArRLLel~p~~~~a 336 (422)
T PF06957_consen 308 SQAFKLKNFITAASFARRLLELNPSPEVA 336 (422)
T ss_dssp HHCCCTTBHHHHHHHHHHHHCT--SCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHcCCCHHHH
Confidence 45567899999999999999999876544
No 499
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=38.43 E-value=28 Score=28.82 Aligned_cols=32 Identities=31% Similarity=0.617 Sum_probs=22.3
Q ss_pred cCCCceEEecccCCCCCCCCcccEEeecCCCCCccccccCccc
Q 005594 587 CQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEE 629 (689)
Q Consensus 587 ~r~APvq~~~~G~p~t~g~~~~Dy~i~d~~~~p~~~~~~y~E~ 629 (689)
.||||+-++| ..|-++|+|....- .=.+|.|.
T Consensus 5 nrPAPveIsy---------~~MrFLIThnPtna--Tln~fieE 36 (173)
T KOG2836|consen 5 NRPAPVEISY---------KNMRFLITHNPTNA--TLNKFIEE 36 (173)
T ss_pred cCCCCeeeec---------cceEEEEecCCCch--hHHHHHHH
Confidence 4999999999 46889999874432 23345543
No 500
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=38.32 E-value=75 Score=23.04 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=16.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 005594 407 NLGVLYRDAGSISLAIDAYEQCLK 430 (689)
Q Consensus 407 ~la~~~~~~g~~~~A~~~~~~al~ 430 (689)
..|.-....|++++|+.+|.++++
T Consensus 10 ~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 10 KKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334445567788888888777765
Done!