Query 005594
Match_columns 689
No_of_seqs 1581 out of 3599
Neff 10.8
Searched_HMMs 29240
Date Tue Mar 26 18:04:09 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005594.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2102-2106//hhsearch_pdb/005594hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gyw_A UDP-N-acetylglucosamine 1.0 1 1 641.9 42.2 371 267-643 10-391 (723)
2 3q3e_A HMW1C-like glycosyltran 1.0 1 1 394.0 22.9 233 438-681 223-463 (631)
3 2vsy_A XCC0866; transferase, g 1.0 1 1 342.4 45.9 386 279-681 2-399 (568)
4 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 330.3 49.8 381 52-446 3-383 (388)
5 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 306.4 48.1 356 47-416 32-387 (388)
6 2gw1_A Mitochondrial precursor 1.0 1 1 305.5 43.3 389 46-443 4-490 (514)
7 3fp2_A TPR repeat-containing p 1.0 1 1 298.3 42.9 387 46-441 23-501 (537)
8 2xpi_A Anaphase-promoting comp 1.0 1 1 295.1 49.4 400 46-459 82-571 (597)
9 2xpi_A Anaphase-promoting comp 1.0 1 1 285.0 48.7 388 47-442 116-590 (597)
10 2y4t_A DNAJ homolog subfamily 1.0 1 1 280.9 45.8 366 42-436 20-415 (450)
No 1
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=1.00 E-value=1 Score=641.94 Aligned_cols=371 Identities=25% Similarity=0.382 Sum_probs=299.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 99997204553129989999999999961999999999999999855998999999999986099998999989999998
Q 005594 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (689)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 346 (689)
.++.++|.++..+|++++|+..|+++++.+|++..++.++|.++..+|++++|+..|+++++++|++..++.++|.++..
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~ 89 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 89 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 99999999999869999999999999986899899999999999986999999999999998099989999999999998
Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 69999999999999810999989999999999982999999999999999299959999999999998399999999999
Q 005594 347 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYE 426 (689)
Q Consensus 347 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 426 (689)
+|++++|++.|+++++++|++..++.++|.++..+|++++|+..|+++++++|++..++.++|.++..+|++++|.+.++
T Consensus 90 ~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~ 169 (723)
T 4gyw_A 90 MQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK 169 (723)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 49999999999999980999899999999999986999999999999997399985777405567774014999999999
Q ss_pred HHHHCCCCCHHHHHH----HHHHHHHCCCCCHHHHHHHHHHHHHHHHH----H-CCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 998409997426742----99994212689907999999999899964----3-02666688889999980898866984
Q 005594 427 QCLKIDPDSRNAGQN----RLLAMNYINEGHDDKLFEAHRDWGKRFMR----L-YSQYTSWDNTKDPERPLVIGYVSPDY 497 (689)
Q Consensus 427 ~al~~~p~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~lriGy~S~d~ 497 (689)
+++++.|+....... ....+.+. ..........++++..... . .++...+.+.+.+++||||||+|+||
T Consensus 170 kal~l~~~~~~~~~l~~~~~~~~l~~~--~~~~~~~aia~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~klrIGyvS~df 247 (723)
T 4gyw_A 170 KLVSIVADQLEKNRLPSVHPHHSMLYP--LSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSDF 247 (723)
T ss_dssp HHHHHHHHHHHTTCCCSSCTTGGGGSC--CCHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCCSSTTTTTCEEEEEEESCS
T ss_pred HHHHHCHHHHHHCCCCCCCHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECHHH
T ss_conf 999967657864347421202454330--488899999999998532111013476445753234665543145641422
Q ss_pred CCCHHHHHHHHHCCCCCCCCEEEEEEECCCC-CCHHHHHHHHHHHHCCCCEEECCCC-CHHHHHHHHHHCCCCEEEECCC
Q ss_conf 3154999878531225899549999717877-9867699999841229963768789-9999999998189748881589
Q 005594 498 FTHSVSYFIEAPLVYHDYQNYKVVVYSAVVK-ADAKTIRFREKVMKKGGIWRDIYGI-DEKKVAAMVREDKIDILVELTG 575 (689)
Q Consensus 498 ~~h~~~~~~~~~~~~~d~~~fev~~y~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~d~idilvdl~g 575 (689)
++|||++|+.+++++||+++|||++|+.++. .|..+.+++..+ ++|+++.++ +|.+++++|++|+|||||||+|
T Consensus 248 ~~H~v~~~~~~~~~~~d~~~fei~~y~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~~~a~~i~~d~iDIlidl~g 323 (723)
T 4gyw_A 248 GNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEA----NHFIDLSQIPCNGKAADRIHQDGIHILVNMNG 323 (723)
T ss_dssp SSSHHHHHHTTHHHHSCTTTEEEEEEESSCCCSCHHHHHHHHHS----SEEEEGGGCCCHHHHHHHHHHTTCSEEEESCS
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHH----CCCCCCCCCCCHHHHHHHHHHCCCEEEEECCC
T ss_conf 14717889999999724574469999768988608999999864----13402012784799999987426506772257
Q ss_pred CCCCCCHHHHCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 88899411210389763771455778889886437861588799553356753426548886545899
Q 005594 576 HTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPS 643 (689)
Q Consensus 576 ~t~~~~~~~~~~r~APvq~~~~G~p~t~g~~~~Dy~i~d~~~~p~~~~~~~~E~l~~lp~~~~~~~~~ 643 (689)
||.++|+.||++|||||||+|||||+|||+++|||+|+|++++|++.+.+|+|||||||+||+|++|.
T Consensus 324 ~t~~~r~~i~a~r~APvQv~~lG~p~TtG~~~iDY~i~D~~~~P~~~~~~ysEklirLP~~~~~~d~~ 391 (723)
T 4gyw_A 324 YTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTFFIGDHA 391 (723)
T ss_dssp SBTTCCTHHHHTCCSSEEEECSSCSSCCCCTTCCEEEECTTTSCGGGGGGCSSEEEECSSCSCCCCHH
T ss_pred CCCCCCCHHHHCCCCCCEEEECCCCCCCCCCCCCEEEECCCCCCCHHHHCCEEEEEECCCCCCCCCCC
T ss_conf 77887632565088872355214787778876777986888788003430600013278754037851
No 2
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=1.00 E-value=1 Score=394.02 Aligned_cols=233 Identities=15% Similarity=0.118 Sum_probs=190.3
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH-HHC--CCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCC
Q ss_conf 67429999421268990799999999989996-430--266668888999998089886698431549998785312258
Q 005594 438 AGQNRLLAMNYINEGHDDKLFEAHRDWGKRFM-RLY--SQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHD 514 (689)
Q Consensus 438 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~lriGy~S~d~~~h~~~~~~~~~~~~~d 514 (689)
...+..+.+.|...-+..++.....++.++.. ... ...+....++.+++++||||+|.++++|+|+.++.+++.+ |
T Consensus 223 ~~~~~ym~csy~~~~~kh~iK~~~n~~~~~~l~~~~g~~~~~~~~~~~~~~K~l~ig~ls~f~~~HsV~r~~~~~l~~-d 301 (631)
T 3q3e_A 223 ISHDVYMHCSYDTSVNKHDVKRALNHVIRRHIESEYGWKDRDVAHIGYRNNKPVMVVLLEHFHSAHSIYRTHSTSMIA-A 301 (631)
T ss_dssp GHHHHHHHGGGSCSTTTTHHHHHHHHHHHHHHHHHSCCCCCCCSSCCEETTEEEEEEECSSCCTTSHHHHHHHHHHHH-H
T ss_pred HCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHH-H
T ss_conf 314623660477973158899999999998667645974566677787789717999958655888189999999996-3
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEECCCCC----HHHHHHHHHHCCCCEEEECCCCCCCCCHHHHCCCCC
Q ss_conf 9954999971787798676999998412299637687899----999999998189748881589888994112103897
Q 005594 515 YQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGID----EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPA 590 (689)
Q Consensus 515 ~~~fev~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~d~idilvdl~g~t~~~~~~~~~~r~A 590 (689)
|++|||++|+ ++..|+.| |+ .+++|+++.+++ +++++++|++|+|||||||+|||.+.+..++++|||
T Consensus 302 R~~FEV~~Ys-~~~~D~~t---r~----~~d~f~~l~~~s~~~~~~~ia~~Ir~d~IDILVdL~g~t~~~~i~~aa~RpA 373 (631)
T 3q3e_A 302 REHFYLIGLG-SPSVDQAG---QE----VFDEFHLVAGDNMKQKLEFIRSVCESNGAAIFYMPSIGMDMTTIFASNTRLA 373 (631)
T ss_dssp TTTSEEEEEE-CTTSCHHH---HT----TSSEEEECCCSSHHHHHHHHHHHHHHHTCSEEEESCCSSSHHHHHHTTSCCS
T ss_pred HHCEEEEEEE-CCCCCHHH---HH----CCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCC
T ss_conf 5368999996-89878878---86----0867999978875456999999998659989997999987004788768990
Q ss_pred CEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEEECCCCC
Q ss_conf 637714557788898864378615887995533567534265488865458999999999998888-9977887179888
Q 005594 591 PVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALT-NGFITFGSFNNLA 669 (689)
Q Consensus 591 Pvq~~~~G~p~t~g~~~~Dy~i~d~~~~p~~~~~~~~E~l~~lp~~~~~~~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~ 669 (689)
||||+|||||+|||+++|||+|+|++++| .+.+|+|||+|||+||+||+|+...|.+.+.|.+. +|+|||||||+++
T Consensus 374 PVQvs~lGyp~TTGl~~iDY~i~D~~~~~--~~~~ysEklirLP~~~~~~~p~~~~p~r~~~~lp~~~G~v~Fg~fn~~~ 451 (631)
T 3q3e_A 374 PIQAIALGHPATTHSDFIEYVIVEDDYVG--SEECFSETLLRLPKDALPYVPSALAPEKVDYLLRENPEVVNIGIASTTM 451 (631)
T ss_dssp SEEEEECSSCSCCCCTTCCEEEEEGGGCC--CGGGCSSEEEEECTTSSCCCCCTTCCSSCCCCCCSCCSEEEEEEEECST
T ss_pred HHEEECCCCCCCCCCCCCCEEEECCCCCC--CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
T ss_conf 63375058875457666778996897778--3237600279789986334784347764334577678848999898656
Q ss_pred CCCHHHHHHHHH
Q ss_conf 899889996220
Q 005594 670 KCKTQISFNIGA 681 (689)
Q Consensus 670 k~~~~~~~~w~~ 681 (689)
|++|+++++|.+
T Consensus 452 Ki~p~~l~~War 463 (631)
T 3q3e_A 452 KLNPYFLEALKA 463 (631)
T ss_dssp TCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
T ss_conf 689999999999
No 3
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=1.00 E-value=1 Score=342.43 Aligned_cols=386 Identities=20% Similarity=0.210 Sum_probs=330.5
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 29989999999999961999999999999999855998999999999986099998999989999998699999999999
Q 005594 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358 (689)
Q Consensus 279 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 358 (689)
.+++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+.+++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 86599999999999975999889999999999986999999999999997399989999999999998799999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHCCCCC
Q ss_conf 998109999899999999999829999999999999992999599999999999983---99999999999998409997
Q 005594 359 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA---GSISLAIDAYEQCLKIDPDS 435 (689)
Q Consensus 359 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~ 435 (689)
++++.+|++..++.++|.++...|++++|+..++++++.+|++..++..++.++..+ |++++|.+.++++++.+|++
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 99743999999999999999875889999999999998589988999999999997325121899999999998468766
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH-HHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCC--
Q ss_conf 42674299994212689907999999999899-964302666688889999980898866984315499987853122--
Q 005594 436 RNAGQNRLLAMNYINEGHDDKLFEAHRDWGKR-FMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVY-- 512 (689)
Q Consensus 436 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~lriGy~S~d~~~h~~~~~~~~~~~~-- 512 (689)
...+..+. ..+........+.|..+ +.....+. ..++..+++++||||++++|..|++..++.++++.
T Consensus 162 ~~~~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~rI~~~~~~~~~~g~~~~~~~l~~~L~ 232 (568)
T 2vsy_A 162 VEPFAFLS-------EDASAAEQLACARTRAQAIAASVRPL--APTRVRSKGPLRVGFVSNGFGAHPTGLLTVALFEALQ 232 (568)
T ss_dssp SCHHHHTT-------SCCCHHHHHHHHHHHHHHHHTTCCCC--CCCCCCSSSCEEEEEEESCSSSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHC-------CCCHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCC
T ss_conf 68177727-------99989999999999973147656778--8887789998089998864100708999999986056
Q ss_pred CCCCCEEEEEEECCCC-CCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHCCCCCC
Q ss_conf 5899549999717877-986769999984122996376878999999999981897488815898889941121038976
Q 005594 513 HDYQNYKVVVYSAVVK-ADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAP 591 (689)
Q Consensus 513 ~d~~~fev~~y~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~idilvdl~g~t~~~~~~~~~~r~AP 591 (689)
+++.+|+|++|+.++. .+..+.+++.. . .|+++..++...+.+.|+.+++||++++.+||.++++.+++.|++|
T Consensus 233 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~l~~~i~~~~~Div~~~~~~~~~~~~~~~~~~~~~ 307 (568)
T 2vsy_A 233 RRQPDLQMHLFATSGDDGSTLRTRLAQA----S-TLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEVFALRPAP 307 (568)
T ss_dssp HHCTTEEEEEEESSCCCSCHHHHHHHHT----S-EEEECTTCCHHHHHHHHHHTTCSEEEECSSCTTCSSCHHHHTCCSS
T ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHC----C-EEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCCCCC
T ss_conf 8801289999979998765999998744----7-6997889999999999986899799989887776667787469975
Q ss_pred EEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC-----CCCCCCEEEEECC
Q ss_conf 37714557788898864378615887995533567534265488865458999999999998-----8889977887179
Q 005594 592 VQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTP-----ALTNGFITFGSFN 666 (689)
Q Consensus 592 vq~~~~G~p~t~g~~~~Dy~i~d~~~~p~~~~~~~~E~l~~lp~~~~~~~~~~~~~~~~~~~-----~~~~~~~~f~~~~ 666 (689)
||++|+|||.|+|++.+||+++|.++.|.+....|.|++..+|++ |.|....+++.+.+ +++++.++|++.+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~i~~ipn~---~~~~~~~~~~~~~~~r~~~~~~~~~~v~~~g~ 384 (568)
T 2vsy_A 308 VQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVLRLQGA---FQPSDTSRVVAEPPSRTQCGLPEQGVVLCCFN 384 (568)
T ss_dssp EEEEESSSSSCCCCTTCCEEEECTTTSCTTTGGGCSSEEEECSSC---SCCCCTTCCCCCCCCTGGGTCCTTSCEEEECC
T ss_pred EEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEECCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECC
T ss_conf 157653677465887752998798768865556881106717876---77997777888898732248999977999688
Q ss_pred CCCCCCHHHHHHHHH
Q ss_conf 888899889996220
Q 005594 667 NLAKCKTQISFNIGA 681 (689)
Q Consensus 667 ~~~k~~~~~~~~w~~ 681 (689)
...|..+..+++|.+
T Consensus 385 ~~~K~~~~li~a~~~ 399 (568)
T 2vsy_A 385 NSYKLNPQSMARMLA 399 (568)
T ss_dssp CGGGCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH
T ss_conf 414699899999999
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=330.29 Aligned_cols=381 Identities=27% Similarity=0.381 Sum_probs=363.3
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999999679999999999999970999778899578999992897999999999997099978899999999998399
Q 005594 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR 131 (689)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 131 (689)
+.+|..++..|++++|+..++++++.+|++..++..++.++...|++++|...++++++.+|.++.++..+|.++...|+
T Consensus 3 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
T ss_conf 55799998779999999999999984978899999999999986899999999999976197866999999999987799
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 89999999999963999978788999999976799998099599999999999629999898999999999819989999
Q 005594 132 LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 211 (689)
Q Consensus 132 ~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 211 (689)
+++|+..|+++++..|++... +..+|.++...|++++|+..++++++.+|+...++..+|.++...|++++|+
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 155 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDG-------YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAK 155 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 999999999998749653999-------9999999998589999999999999759896899999999999846899999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999998399989989999999998599999999999999509991899965999999720455312998999999999
Q 005594 212 GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 291 (689)
Q Consensus 212 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 291 (689)
..++++++..|.+..++..+|.++...|++++|+..++++++..|+....+..+ |.++...+++++|+..+++
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------g~~~~~~~~~~~A~~~~~~ 228 (388)
T 1w3b_A 156 ACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINL-------GNVLKEARIFDRAVAAYLR 228 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH-------HHHHHTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHH-------HHHHHHCCCHHHHHHHHHH
T ss_conf 999999872989789999999999985999999999999985598867999999-------9999985789999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 99619999999999999998559989999999999860999989999899999986999999999999981099998999
Q 005594 292 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 371 (689)
Q Consensus 292 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 371 (689)
++...|++..++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++..|.+..++
T Consensus 229 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 308 (388)
T 1w3b_A 229 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSL 308 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 98529687899999999999868899999999999864999889999999999986997999999999986494449999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 999999998299999999999999929995999999999999839999999999999840999742674299994
Q 005594 372 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 446 (689)
Q Consensus 372 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~~~ 446 (689)
..+|.++...|++++|+..++++++..|++..++..+|.++...|++++|+..|+++++++|++..++.++....
T Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~ 383 (388)
T 1w3b_A 309 NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 999999998489999999999998609873999977999999868889999999999861999789998599999
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=306.39 Aligned_cols=356 Identities=26% Similarity=0.388 Sum_probs=180.9
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 51659999999996799999999999999709997788995789999928979999999999970999788999999999
Q 005594 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (689)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (689)
+...+..++..+...|++++|...++++++.+|.++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++
T Consensus 32 ~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 111 (388)
T 1w3b_A 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAAL 111 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 89999999999998689999999999997619786699999999998779999999999999874965399999999999
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf 98399899999999999639999787889999999767999980995999999999996299998989999999998199
Q 005594 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (689)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 206 (689)
...|++++|+..++++++..|+.... +..+|.++...|++++|+..|++++...|.+..++..+|.++...|+
T Consensus 112 ~~~g~~~~A~~~~~~al~~~p~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 184 (388)
T 1w3b_A 112 VAAGDMEGAVQAYVSALQYNPDLYCV-------RSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 184 (388)
T ss_dssp HHHSCSSHHHHHHHHHHHHCTTCTHH-------HHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 98589999999999999759896899-------99999999984689999999999987298978999999999998599
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 89999999999983999899899999999985999999999999995099918999659999997204553129989999
Q 005594 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286 (689)
Q Consensus 207 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 286 (689)
+++|+..++++++.+|+...++..+|.++...|++++|+..+++++...|++...+..++.+ +...|++++|+
T Consensus 185 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~-------~~~~g~~~~A~ 257 (388)
T 1w3b_A 185 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV-------YYEQGLIDLAI 257 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHH-------HHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH-------HHHCCCHHHHH
T ss_conf 99999999999855988679999999999985789999999999985296878999999999-------99868899999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999996199999999999999985599899999999998609999899998999999869999999999999810999
Q 005594 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366 (689)
Q Consensus 287 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 366 (689)
..+++++...|.++.++..+|.++...|++++|+..++++++..|.+...+..+|.++...|++++|+..++++++..|+
T Consensus 258 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 337 (388)
T 1w3b_A 258 DTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337 (388)
T ss_dssp HHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
T ss_conf 99999986499988999999999998699799999999998649444999999999999848999999999999860987
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 98999999999998299999999999999929995999999999999839
Q 005594 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416 (689)
Q Consensus 367 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 416 (689)
+..++..+|.++...|++++|+..++++++.+|++..++.++|.++..+|
T Consensus 338 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 338 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 39999779999998688899999999998619997899985999998745
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=305.48 Aligned_cols=389 Identities=16% Similarity=0.114 Sum_probs=355.4
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 75165999999999679999999999999970999778899578999992897999999999997099978899999999
Q 005594 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (689)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (689)
..++.++.+|..++..|+|++|+..|+++++.+| ++.++..+|.++...|++++|+..++++++.+|++..++..+|.+
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 4579999987899986027899999999985592-278998688999988549999999987760693789999988899
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHH-------------------------------------------------
Q ss_conf 9983998999999999996399997878899-------------------------------------------------
Q 005594 126 YKDEGRLVEAAESYHKALSADPSYKPAAECL------------------------------------------------- 156 (689)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~------------------------------------------------- 156 (689)
+...|++++|+..|++++...|.+.......
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHH
T ss_conf 99876688899999999955987511378999999999999999999998999987665126772467886344786158
Q ss_pred -----------------------HHHHHHHHHHHHH---CCCHHHHHHHHHHHHH-----H--C-------CCCHHHHHH
Q ss_conf -----------------------9999976799998---0995999999999996-----2--9-------999898999
Q 005594 157 -----------------------AIVLTDLGTSLKL---AGNTQDGIQKYYEALK-----I--D-------PHYAPAYYN 196 (689)
Q Consensus 157 -----------------------a~~~~~l~~~~~~---~~~~~~A~~~~~~al~-----~--~-------~~~~~~~~~ 196 (689)
...+...|..+.. .|++++|+..+++++. . . |....++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf 99999862587888887259958889999899998762332299999999999988665422381001148278999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999981998999999999998399989989999999998599999999999999509991899965999999720455
Q 005594 197 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276 (689)
Q Consensus 197 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~ 276 (689)
+|.++...|++++|+..++++++..|. ..++..+|.++...|++++|+..+++++...|.+...+..++. ++
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~-------~~ 314 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQ-------MN 314 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHH-------HH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH-------HH
T ss_conf 999999878999999999999863864-8999999999998888999999999986138677899999999-------99
Q ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 31299899999999999619999999999999998559989999999999860999989999899999986999999999
Q 005594 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 356 (689)
Q Consensus 277 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 356 (689)
...|++++|+..+++++...|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 98077999999999998738502899999999999868999999999999987546778999999999878899999999
Q ss_pred HHHHHHCCCCCHH------HHHHHHHHHHH---CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9999810999989------99999999998---29999999999999992999599999999999983999999999999
Q 005594 357 YQMALSIKPNFSQ------SLNNLGVVYTV---QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427 (689)
Q Consensus 357 ~~~al~~~p~~~~------~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (689)
++++++..|.+.. ++..+|.++.. .|++++|+..+++++...|++..++..+|.++...|++++|...|++
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 99999761233217899999999999986633258889999999999875855589999999999982579999999999
Q ss_pred HHHCCCCCHHHHHHHH
Q ss_conf 9840999742674299
Q 005594 428 CLKIDPDSRNAGQNRL 443 (689)
Q Consensus 428 al~~~p~~~~a~~~~~ 443 (689)
+++++|++..++..+.
T Consensus 475 a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 475 SADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHHCSSHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHH
T ss_conf 9876614688999999
No 7
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=298.31 Aligned_cols=387 Identities=16% Similarity=0.154 Sum_probs=344.7
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 75165999999999679999999999999970999778899578999992897999999999997099978899999999
Q 005594 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (689)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (689)
..++.++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|++..++..+|.+
T Consensus 23 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 102 (537)
T 3fp2_A 23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 88999999999999864299999999999863899848999999999986899999999999986098628999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCHHHHHH--------------------------------------------------
Q ss_conf 998399899999999999639999787889--------------------------------------------------
Q 005594 126 YKDEGRLVEAAESYHKALSADPSYKPAAEC-------------------------------------------------- 155 (689)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------------------------------------------------- 155 (689)
+...|++++|+..++ ++...|+.......
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHCCCHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHH
T ss_conf 998389999999999-9864878785889999987789889999999997474545434506757999997447499999
Q ss_pred --------------HHHHHHHH-----HHHHHHCCCHHHHHHHHHHHHHHCCCCHH-------HHHHHHHHHHHCCCHHH
Q ss_conf --------------99999976-----79999809959999999999962999989-------89999999998199899
Q 005594 156 --------------LAIVLTDL-----GTSLKLAGNTQDGIQKYYEALKIDPHYAP-------AYYNLGVVYSELMQYDT 209 (689)
Q Consensus 156 --------------~a~~~~~l-----~~~~~~~~~~~~A~~~~~~al~~~~~~~~-------~~~~la~~~~~~g~~~~ 209 (689)
+...+..+ +......+++++|+..++++++..|.+.. ++..+|.++...|++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 87632564617899999998788764020688887999999999999987877404459999999999999875455789
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 99999999983999899899999999985999999999999995099918999659999997204553129989999999
Q 005594 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289 (689)
Q Consensus 210 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 289 (689)
|+..++++++..|. ...+..+|.++...|++++|+..+++++...|.+...+..++.+ +...+++++|+..+
T Consensus 262 A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 262 AQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQM-------YFILQDYKNAKEDF 333 (537)
T ss_dssp HHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH-------HHHCCCHHHHHHHH
T ss_conf 99999999866987-46999999999980379999999999754599987999999999-------98668999999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH
Q ss_conf 99996199999999999999985599899999999998609999899998999999869999999999999810999989
Q 005594 290 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 369 (689)
Q Consensus 290 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 369 (689)
++++...|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|++..
T Consensus 334 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 334 QKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHH
T ss_conf 99998599977999999999998477999999999998739998599999999998837889999999999870976244
Q ss_pred ------HHHHHHHHHHHC----------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf ------999999999982----------9999999999999992999599999999999983999999999999984099
Q 005594 370 ------SLNNLGVVYTVQ----------GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433 (689)
Q Consensus 370 ------~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 433 (689)
.+..+|.++... |++++|+..++++++..|++..++..+|.++..+|++++|+..|+++++++|
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 68889999988999999764010022475799999999999974999789999999999985149999999999998689
Q ss_pred CCHHHHHH
Q ss_conf 97426742
Q 005594 434 DSRNAGQN 441 (689)
Q Consensus 434 ~~~~a~~~ 441 (689)
+.......
T Consensus 494 ~~~~~~~~ 501 (537)
T 3fp2_A 494 TMDEKLQA 501 (537)
T ss_dssp -CHHHHHH
T ss_pred CCHHHHHH
T ss_conf 93888888
No 8
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=295.08 Aligned_cols=400 Identities=16% Similarity=0.077 Sum_probs=233.9
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 75165999999999679999999999999970999778899578999992897999999999997099978899999999
Q 005594 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (689)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (689)
.....+..++..+...|++++|+..|++++...|+. ..+..++.++...|++++|+..+++++.. |.++.++..++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCHHHHHHHHHH
T ss_conf 899999999999987458347999999999608993-57999999999747699999999987335-4565089999999
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCHHH------------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH-
Q ss_conf 998399899999999999639999787------------8899999997679999809959999999999962999989-
Q 005594 126 YKDEGRLVEAAESYHKALSADPSYKPA------------AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP- 192 (689)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~~------------~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~- 192 (689)
|...|++++|+..|++ ..|..... ......++..+|..+...|++++|+..|+++++.+|.+..
T Consensus 160 ~~~~g~~~~A~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 236 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGE---TNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA 236 (597)
T ss_dssp HHHTTCHHHHHHHHCS---SCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHHHC---CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHH
T ss_conf 9988669999999842---4886322323433432112351258999998899998399899999999999729325699
Q ss_pred ----------------------------------------------------------------------HHHHHHHHHH
Q ss_conf ----------------------------------------------------------------------8999999999
Q 005594 193 ----------------------------------------------------------------------AYYNLGVVYS 202 (689)
Q Consensus 193 ----------------------------------------------------------------------~~~~la~~~~ 202 (689)
.+..++..+.
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 99999850346156789998657742344308899999999999980731399999999876438830999999999999
Q ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 81998999999999998399989989999999998599999999999999509991899965999999720455312998
Q 005594 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 282 (689)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 282 (689)
..|++++|+..++++++..|.+..++..++.++...|++++|+..+++++...|.+...+.. ++..+...|++
T Consensus 317 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~g~~ 389 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLA-------VGIYYLCVNKI 389 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHH-------HHHHHHHTTCH
T ss_pred HHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHH-------HHHHHHHHCCH
T ss_conf 84689999999999997295537999999999998277779999999998518354799999-------99999983569
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999999999619999999999999998559989999999999860999989999899999986999999999999981
Q 005594 283 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 362 (689)
Q Consensus 283 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 362 (689)
++|+..++++++..|.+..++..++.++...|++++|+..++++++..|.+...+..++.++...|++++|+..|+++++
T Consensus 390 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 390 SEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999998729777899999999999757779999999999986813438999999999985799999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 09999899999999999829999999999999992------9995-9999999999998399999999999998409997
Q 005594 363 IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------NPTY-AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (689)
Q Consensus 363 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (689)
..|.++.++..++.++...|++++|+..++++++. +|+. ..++..+|.++...|++++|+..++++++++|++
T Consensus 470 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 549 (597)
T 2xpi_A 470 LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND 549 (597)
T ss_dssp HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC
T ss_pred HCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
T ss_conf 48887679999999999818999999999999985323454535499999999999998047999999999999738997
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 426742999942126899079999
Q 005594 436 RNAGQNRLLAMNYINEGHDDKLFE 459 (689)
Q Consensus 436 ~~a~~~~~~~~~~~~~~~~~~~~~ 459 (689)
..++.. ++..+...|+.+++.+
T Consensus 550 ~~~~~~--l~~~~~~~g~~~~A~~ 571 (597)
T 2xpi_A 550 ANVHTA--IALVYLHKKIPGLAIT 571 (597)
T ss_dssp HHHHHH--HHHHHHHTTCHHHHHH
T ss_pred HHHHHH--HHHHHHHHCCHHHHHH
T ss_conf 389999--9999998178999999
No 9
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=285.03 Aligned_cols=388 Identities=18% Similarity=0.181 Sum_probs=352.0
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC--------------
Q ss_conf 516599999999967999999999999997099977889957899999289799999999999709--------------
Q 005594 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD-------------- 112 (689)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------- 112 (689)
+...+..++..+...|++++|+..|++++.. |.++.++..++.+|...|++++|+..|++.....
T Consensus 116 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (597)
T 2xpi_A 116 NPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDG 194 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCS
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 9357999999999747699999999987335-456508999999999886699999998424886322323433432112
Q ss_pred --CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHH----------------------------------
Q ss_conf --99788999999999983998999999999996399997878899----------------------------------
Q 005594 113 --PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL---------------------------------- 156 (689)
Q Consensus 113 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---------------------------------- 156 (689)
+.+..++..+|.++...|++++|+..|+++++.+|.+...+..+
T Consensus 195 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 274 (597)
T 2xpi_A 195 GIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSL 274 (597)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 35125899999889999839989999999999972932569999999850346156789998657742344308899999
Q ss_pred ------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf ------------------------------99999767999980995999999999996299998989999999998199
Q 005594 157 ------------------------------AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (689)
Q Consensus 157 ------------------------------a~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 206 (689)
..++..++..+...|++++|+..|+++++..|.+..++..++.++...|+
T Consensus 275 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 354 (597)
T 2xpi_A 275 YMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGE 354 (597)
T ss_dssp HHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
T ss_conf 99999998073139999999987643883099999999999984689999999999997295537999999999998277
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 89999999999983999899899999999985999999999999995099918999659999997204553129989999
Q 005594 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286 (689)
Q Consensus 207 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 286 (689)
+++|+..++++++..|.+...+..++.++...|++++|+..|+++++..|.+...+..++..+. ..|++++|+
T Consensus 355 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~A~ 427 (597)
T 2xpi_A 355 KNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFA-------IEGEHDQAI 427 (597)
T ss_dssp HHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-------HHTCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-------HCCCHHHHH
T ss_conf 7799999999985183547999999999998356999999999998729777899999999999-------757779999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---
Q ss_conf 99999996199999999999999985599899999999998609999899998999999869999999999999810---
Q 005594 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI--- 363 (689)
Q Consensus 287 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 363 (689)
..+++++...|.+...+..++.++...|++++|+..++++++..|.++..+..+|.++...|++++|+..|+++++.
T Consensus 428 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 507 (597)
T 2xpi_A 428 SAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507 (597)
T ss_dssp HHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
T ss_conf 99999998681343899999999998579999999999999848887679999999999818999999999999985323
Q ss_pred ---CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf ---9999-899999999999829999999999999992999599999999999983999999999999984099974267
Q 005594 364 ---KPNF-SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (689)
Q Consensus 364 ---~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 439 (689)
.|+. ..++..+|.++...|++++|+..++++++..|++..++..++.+|...|++++|...|+++++++|++..++
T Consensus 508 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 587 (597)
T 2xpi_A 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMAS 587 (597)
T ss_dssp SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 45453549999999999999804799999999999973899738999999999981789999999999972088874899
Q ss_pred HHH
Q ss_conf 429
Q 005594 440 QNR 442 (689)
Q Consensus 440 ~~~ 442 (689)
..+
T Consensus 588 ~~l 590 (597)
T 2xpi_A 588 DLL 590 (597)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=280.90 Aligned_cols=366 Identities=17% Similarity=0.196 Sum_probs=302.5
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 22367516599999999967999999999999997099977889957899999289799999999999709997889999
Q 005594 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH 121 (689)
Q Consensus 42 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (689)
...+.++..++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|++..++..
T Consensus 20 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 99 (450)
T 2y4t_A 20 FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQ 99 (450)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 65378999999999999987999999999999998497168999999999998799799999999998449874899999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCH---HHHHHHHHH-----HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 99999983998999999999996399997---878899999-----9976799998099599999999999629999898
Q 005594 122 CGILYKDEGRLVEAAESYHKALSADPSYK---PAAECLAIV-----LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 193 (689)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~a~~-----~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 193 (689)
+|.++...|++++|+..|+++++..|.+. ..+..++.+ +..+|..+...|++++|+..+++++...|.+..+
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 179 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAEL 179 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 99999986999999999999972499970168899999999999999999999998689999999999999868897699
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999999981998999999999998399989989999999998599999999999999509991899965999999720
Q 005594 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273 (689)
Q Consensus 194 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~ 273 (689)
+..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|+....+..+..+.
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~---- 255 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK---- 255 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH----
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH----
T ss_conf 9999999987799999999999999868898799999999999759999999999999875998089999999999----
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCC
Q ss_conf 4553129989999999999961999999999999999855998999999999986099998----999989999998699
Q 005594 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA----EACNNLGVIYKDRDN 349 (689)
Q Consensus 274 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~ 349 (689)
.......+|.++...|++++|+..++++++..|.+. ..+..+|.++...|+
T Consensus 256 -------------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~ 310 (450)
T 2y4t_A 256 -------------------------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEK 310 (450)
T ss_dssp -------------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTC
T ss_pred -------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf -------------------------9999999999998717999999999999850873368999999999999998788
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH------------HHHCC-
Q ss_conf 99999999999810999989999999999982999999999999999299959999999999------------99839-
Q 005594 350 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL------------YRDAG- 416 (689)
Q Consensus 350 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~------------~~~~g- 416 (689)
+++|+..++++++..|++..++..+|.++...|++++|+..+++++++.|++..++..++.+ |..+|
T Consensus 311 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~ 390 (450)
T 2y4t_A 311 PVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGV 390 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCS
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCC
T ss_conf 99999999999884845489999999999870379999999999988593529999999999998643350569998189
Q ss_pred ----CHHHHHHHHHH-HHHCCCCCH
Q ss_conf ----99999999999-984099974
Q 005594 417 ----SISLAIDAYEQ-CLKIDPDSR 436 (689)
Q Consensus 417 ----~~~~A~~~~~~-al~~~p~~~ 436 (689)
+.+++.+.|++ +++..|++.
T Consensus 391 ~~~~~~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 391 KRNAKKQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp STTCCTTHHHHHHHHHHHHSCGGGC
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 8668989999999999997598979
Done!