RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 005595
(689 letters)
>gnl|CDD|99996 cd04300, GT1_Glycogen_Phosphorylase, This is a family of
oligosaccharide phosphorylases. It includes yeast and
mammalian glycogen phosphorylases, plant starch/glucan
phosphorylase, as well as the maltodextrin
phosphorylases of bacteria. The members of this family
catalyze the breakdown of oligosaccharides into
glucose-1-phosphate units. They are important allosteric
enzymes in carbohydrate metabolism. The allosteric
control mechanisms of yeast and mammalian members of
this family are different from that of bacterial
members. The members of this family belong to the GT-B
structural superfamily of glycoslytransferases, which
have characteristic N- and C-terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two
domains includes the catalytic center and permits a high
degree of flexibility.
Length = 797
Score = 1125 bits (2913), Expect = 0.0
Identities = 382/691 (55%), Positives = 477/691 (69%), Gaps = 21/691 (3%)
Query: 1 MATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSV 60
+ATL LP +GYG+RY YGLFKQKI Q E+ ++WL +PWE+ R DV PVRF G V
Sbjct: 120 LATLGLPGYGYGIRYEYGLFKQKIVDGYQVELPDNWLRYGNPWEIRRPDVAVPVRFGGRV 179
Query: 61 MVNPNGTR---KWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQ 117
+G R +WV GE V AV YD PIPGY T +LRLW A+AS E+F+L FN G
Sbjct: 180 EHYEDGGRLRVRWVDGETVLAVPYDTPIPGYGTNTVNTLRLWSAEAS-EEFDLDAFNRGD 238
Query: 118 YESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWS 177
Y A + +RA+ I VLYP DSTEEGK LRLKQQ+F SASLQD+I RFK K+ S
Sbjct: 239 YIRAVEEKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQDIIRRFK--KTHGPLS 296
Query: 178 EFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKW 237
EFP KVA+QLNDTHP LAIPELMR+L+DEEGL WDEAWDITT+T AYTNHT+LPEALEKW
Sbjct: 297 EFPDKVAIQLNDTHPALAIPELMRILVDEEGLDWDEAWDITTKTFAYTNHTLLPEALEKW 356
Query: 238 SQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCV 297
+ +LLPRH+EII EI++RF+ VR+ E +I M I++ +K VRMA+L +
Sbjct: 357 PVDLFERLLPRHLEIIYEINRRFLEEVRAKYPGDEDRIRRMSIIEEGGEK-QVRMAHLAI 415
Query: 298 VSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKW 357
V +H+VNGVA LHS++LK +F D+ L+P K NKTNGITPRRWL NP LS +IT+
Sbjct: 416 VGSHSVNGVAALHSELLKETVFKDFYELYPEKFNNKTNGITPRRWLLQANPGLSALITET 475
Query: 358 LKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDI 417
+ D WVT+LD L L FAD+ E+ + K A+K+ LA YI + TGV +DP+SLFD+
Sbjct: 476 IGDD-WVTDLDQLKKLEPFADDPAFLKEFRAIKQANKERLAAYIKKTTGVEVDPDSLFDV 534
Query: 418 QVKRIHEYKRQLLNILGAIYRYKKLKEMSPQERKKTTPRTIMIGGKAFATYTNAKRIVKL 477
QVKRIHEYKRQLLN+L I+ Y ++KE PRT + GGKA Y AK I+KL
Sbjct: 535 QVKRIHEYKRQLLNVLHIIHLYNRIKENPN---ADIVPRTFIFGGKAAPGYYMAKLIIKL 591
Query: 478 VNDVGEVVNTDPEVNSYLKVVFVPNYNVSVAELLIPGSELSQHISTAGMEASGTSNMKFS 537
+N V +VVN DP+V LKVVF+PNYNVS+AE +IP ++LS+ ISTAG EASGT NMKF
Sbjct: 592 INAVADVVNNDPDVGDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFM 651
Query: 538 LNGCLIIGTLDGANVEIRQEIGEENFFLFGAVAEQVPKLRKEREDG--LFKPDPRFEEAK 595
LNG L IGTLDGANVEI +E+GEEN F+FG AE+V LR ++ DP
Sbjct: 652 LNGALTIGTLDGANVEIAEEVGEENIFIFGLTAEEVEALRANGYYPADYYEADPELRRVL 711
Query: 596 QFIRSGAFGSYD---YNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDQKK 652
I SG F D + PL+DSL D +LV DF SY++AQ++VD Y+DQ++
Sbjct: 712 DQIASGFFSPGDPGEFRPLVDSLLNG-----NDEYLVLADFESYVDAQEKVDALYRDQEE 766
Query: 653 WLKMSILSTAGSGKFSSDRTIAQYAKEIWNI 683
W + SIL+ A SGKFSSDRTI +YA++IWN+
Sbjct: 767 WARKSILNIARSGKFSSDRTIREYAEDIWNV 797
>gnl|CDD|215868 pfam00343, Phosphorylase, Carbohydrate phosphorylase. The members
of this family catalyze the formation of glucose
1-phosphate from one of the following polyglucoses;
glycogen, starch, glucan or maltodextrin.
Length = 712
Score = 1113 bits (2882), Expect = 0.0
Identities = 405/690 (58%), Positives = 495/690 (71%), Gaps = 19/690 (2%)
Query: 1 MATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSV 60
+ATL LPA+GYG+RY YG+F+QKI Q E+ +DWLE +PWE+ R DV +PVRF+G V
Sbjct: 37 LATLGLPAYGYGIRYEYGMFEQKIVDGWQVELPDDWLEYGNPWEIERPDVRYPVRFYGKV 96
Query: 61 MVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYES 120
KW EVV AVAYD PIPGY+T NT +LRLW AKAS E+FNL FNDG Y +
Sbjct: 97 EEKEGRKTKWDDTEVVLAVAYDTPIPGYRTNNTNTLRLWSAKAS-EEFNLADFNDGDYLA 155
Query: 121 AAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFP 180
A + +RA+ I VLYP D+T EGK LRLKQQ+FL SA+LQD+I RFK KS + SEFP
Sbjct: 156 AVEDKNRAENISRVLYPNDNTFEGKELRLKQQYFLVSATLQDIIRRFK--KSHKSLSEFP 213
Query: 181 SKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQA 240
KVA+QLNDTHPTLAIPELMR+L+DEEGL WDEAW+ITT+T AYTNHTVLPEALEKW
Sbjct: 214 DKVAIQLNDTHPTLAIPELMRILIDEEGLSWDEAWEITTKTFAYTNHTVLPEALEKWPVH 273
Query: 241 VMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSA 300
++ KLLPRH++II EI++RF+ +V E K+ M I+D K VRMA+L +V +
Sbjct: 274 LVEKLLPRHLQIIYEINERFLKLVWEKWPGDEDKLRRMSIIDEGAGK-RVRMAHLAIVGS 332
Query: 301 HTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKT 360
H VNGVA LHSD++K DLF D+ LWPNK QNKTNGITPRRWL NP L+ IITK L
Sbjct: 333 HAVNGVAALHSDLVKKDLFPDFHELWPNKFQNKTNGITPRRWLLQANPGLAAIITKSLG- 391
Query: 361 DQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVK 420
D+WVT+L+ L+ L FAD+ EW K A+K+ LA+YI + TGV ++PN+LFD+QVK
Sbjct: 392 DEWVTDLEQLIKLEPFADDPAFIEEWAEIKQANKQRLAEYIEKETGVVVNPNALFDVQVK 451
Query: 421 RIHEYKRQLLNILGAIYRYKKLKEMSPQERKKTTPRTIMIGGKAFATYTNAKRIVKLVND 480
RIHEYKRQLLN+L IYRY ++KE P K PR ++ GGKA Y AKRI+KL+N
Sbjct: 452 RIHEYKRQLLNVLHVIYRYNRIKEDPP---KDVVPRVVIFGGKAAPGYYMAKRIIKLINS 508
Query: 481 VGEVVNTDPEVNSYLKVVFVPNYNVSVAELLIPGSELSQHISTAGMEASGTSNMKFSLNG 540
V +VVN DP V LKVVF+PNY VS+AE +IP S++S+ ISTAG EASGTSNMKF+LNG
Sbjct: 509 VADVVNNDPAVGDKLKVVFLPNYRVSLAEKIIPASDISEQISTAGTEASGTSNMKFALNG 568
Query: 541 CLIIGTLDGANVEIRQEIGEENFFLFGAVAEQVPKLRKE--REDGLFKPDPRFEEAKQFI 598
L IGTLDGANVEI +E+GEEN F+FG AE+V LRK+ R +K DPR + I
Sbjct: 569 ALTIGTLDGANVEIAEEVGEENIFIFGLTAEEVEALRKKGYRSREYYKKDPRLRQVLDQI 628
Query: 599 RSGAFG---SYDYNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDQKKWLK 655
SG F + +LDSL GDY+LV DFPSY++AQ RVD+ YKD++ W K
Sbjct: 629 ISGFFSPEDPDRFRDILDSL------QGGDYYLVFADFPSYVDAQKRVDELYKDREAWTK 682
Query: 656 MSILSTAGSGKFSSDRTIAQYAKEIWNITE 685
SIL+ A SGKFSSDRTI +YAK IW I
Sbjct: 683 KSILNIANSGKFSSDRTIKEYAKRIWGIEP 712
>gnl|CDD|233722 TIGR02093, P_ylase, glycogen/starch/alpha-glucan phosphorylases.
This family consists of phosphorylases. Members use
phosphate to break alpha 1,4 linkages between pairs of
glucose residues at the end of long glucose polymers,
releasing alpha-D-glucose 1-phosphate. The nomenclature
convention is to preface the name according to the
natural substrate, as in glycogen phosphorylase, starch
phosphorylase, maltodextrin phosphorylase, etc. Name
differences among these substrates reflect differences
in patterns of branching with alpha 1,6 linkages.
Members include allosterically regulated and unregulated
forms. A related family, TIGR02094, contains examples
known to act well on particularly small alpha 1,4
glucans, as may be found after import from exogenous
sources [Energy metabolism, Biosynthesis and degradation
of polysaccharides].
Length = 794
Score = 1088 bits (2816), Expect = 0.0
Identities = 380/691 (54%), Positives = 479/691 (69%), Gaps = 21/691 (3%)
Query: 1 MATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSV 60
+ATL LPA GYG+RY YGLFKQKI Q E+ +DWL +PWE+ R D + VRF G V
Sbjct: 117 LATLGLPATGYGIRYEYGLFKQKIVDGWQVELPDDWLRYGNPWEIRRPDRSYEVRFGGRV 176
Query: 61 MVNPNG---TRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQ 117
+ P+ +WV E V A+ YD+P+PGY+T +LRLW A+A E+F+L FN G
Sbjct: 177 ELQPDSDRLRPRWVPAETVLAIPYDVPVPGYRTDTVNTLRLWSAEAP-EEFDLDAFNAGD 235
Query: 118 YESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWS 177
Y A + +RA+ I VLYP DST EGK LRLKQQ+F SASLQD+I R E + S
Sbjct: 236 YYEAVEEKNRAENISRVLYPNDSTYEGKELRLKQQYFFVSASLQDIIRRHLE--THPDLS 293
Query: 178 EFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKW 237
+FP KVA+QLNDTHP LAIPELMRLL+DEEG+ WDEAWDITT+T AYTNHT+LPEALEKW
Sbjct: 294 DFPKKVAIQLNDTHPALAIPELMRLLIDEEGMDWDEAWDITTKTFAYTNHTLLPEALEKW 353
Query: 238 SQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCV 297
+ KLLPRH+EII EI++RF+A + + E+KI M I++ K VRMANL +
Sbjct: 354 PVDLFQKLLPRHLEIIYEINRRFLAELAAKGPGDEAKIRRMSIIEEGQSK-RVRMANLAI 412
Query: 298 VSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKW 357
V +H+VNGVA LH+++LK DL D+ L+P K NKTNGITPRRWLR NP LS ++T+
Sbjct: 413 VGSHSVNGVAALHTELLKEDLLKDFYELYPEKFNNKTNGITPRRWLRLANPGLSALLTET 472
Query: 358 LKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDI 417
+ D W+T+LDLL L +AD++E E+ K A+K+ LA YI TGV +DPNS+FD+
Sbjct: 473 IG-DDWLTDLDLLKKLEPYADDSEFLEEFRQVKQANKQRLAAYIKEHTGVEVDPNSIFDV 531
Query: 418 QVKRIHEYKRQLLNILGAIYRYKKLKEMSPQERKKTTPRTIMIGGKAFATYTNAKRIVKL 477
QVKR+HEYKRQLLN+L IY Y ++KE P++ PRT++ GGKA Y AK I+KL
Sbjct: 532 QVKRLHEYKRQLLNVLHVIYLYNRIKEDPPKDI---VPRTVIFGGKAAPGYHMAKLIIKL 588
Query: 478 VNDVGEVVNTDPEVNSYLKVVFVPNYNVSVAELLIPGSELSQHISTAGMEASGTSNMKFS 537
+N V EVVN DP V LKVVFVPNYNVS+AEL+IP ++LS+ ISTAG EASGT NMKF
Sbjct: 589 INSVAEVVNNDPAVGDKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFM 648
Query: 538 LNGCLIIGTLDGANVEIRQEIGEENFFLFGAVAEQVPKLRKE--REDGLFKPDPRFEEAK 595
LNG L IGTLDGANVEIR+E+G EN F+FG E+V LR++ ++ DP +
Sbjct: 649 LNGALTIGTLDGANVEIREEVGAENIFIFGLTVEEVEALREKGYNPREYYEADPELKRVL 708
Query: 596 QFIRSGAFG---SYDYNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDQKK 652
I SG F + PL DSL + GD F V DF +Y++AQ+RVD Y+DQ +
Sbjct: 709 DLISSGTFSPGDPGLFRPLYDSLLNH-----GDPFFVLADFAAYVDAQERVDALYRDQLE 763
Query: 653 WLKMSILSTAGSGKFSSDRTIAQYAKEIWNI 683
W K SIL+ A SGKFSSDRTI +YAKEIW++
Sbjct: 764 WTKKSILNIANSGKFSSDRTIREYAKEIWHV 794
>gnl|CDD|237881 PRK14985, PRK14985, maltodextrin phosphorylase; Provisional.
Length = 798
Score = 730 bits (1886), Expect = 0.0
Identities = 311/687 (45%), Positives = 430/687 (62%), Gaps = 24/687 (3%)
Query: 1 MATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRF-FGS 59
MAT+ PA GYGL Y+YGLF+Q Q E +DW PW RH+ V+ G
Sbjct: 126 MATVGQPATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRDSYPW--FRHNEALDVQVGIGG 183
Query: 60 VMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYE 119
+ +G +W + A+D+P+ GY+ LRLW A A F+L +FNDG +
Sbjct: 184 KVTKQDGRERWEPAFTITGEAWDLPVVGYRNGVAQPLRLWQAT-HAHPFDLTKFNDGDFL 242
Query: 120 SAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEF 179
A Q A+++ VLYP D+ GK LRL QQ+F C+ S+ D ILR + +GR+ E
Sbjct: 243 RAEQQGIDAEKLTKVLYPNDNHTAGKKLRLMQQYFQCACSVAD-ILR-RHHLAGRKLHEL 300
Query: 180 PSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQ 239
P +QLNDTHPT+AIPEL+R+L+DE L WD+AW IT++T AYTNHT++PEALE W +
Sbjct: 301 PDYEVIQLNDTHPTIAIPELLRVLLDEHQLSWDDAWAITSKTFAYTNHTLMPEALECWDE 360
Query: 240 AVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVS 299
++ LLPRHM+II+EI+ RF +V T + + ++ + VRMANLCVVS
Sbjct: 361 KLVKSLLPRHMQIIKEINTRFKTLVEKTWPGDKKVWAKLAVVHDKQ----VRMANLCVVS 416
Query: 300 AHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLK 359
VNGVA LHSD++ DLF +Y LWPNK N TNGITPRRW++ CNP L+ ++ K LK
Sbjct: 417 GFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKTLK 476
Query: 360 TDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQV 419
+ W +LD L+ L ++AD+ + ++ K A+K LA+++ + TG+ I+P ++FD+Q+
Sbjct: 477 KE-WANDLDQLINLEKYADDAAFRQQYREIKQANKVRLAEFVKQRTGIEINPQAIFDVQI 535
Query: 420 KRIHEYKRQLLNILGAIYRYKKLKEMSPQERKKTTPRTIMIGGKAFATYTNAKRIVKLVN 479
KR+HEYKRQ LN+L + YK+++E +PQ PR + G KA Y AK I+ +N
Sbjct: 536 KRLHEYKRQHLNLLHILALYKEIRE-NPQ--ADRVPRVFLFGAKAAPGYYLAKNIIFAIN 592
Query: 480 DVGEVVNTDPEVNSYLKVVFVPNYNVSVAELLIPGSELSQHISTAGMEASGTSNMKFSLN 539
V EV+N DP V LKVVF+P+Y VS AELLIP +++S+ ISTAG EASGT NMK +LN
Sbjct: 593 KVAEVINNDPLVGDKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALN 652
Query: 540 GCLIIGTLDGANVEIRQEIGEENFFLFGAVAEQVPKLRKERED--GLFKPDPRFEEAKQF 597
G L +GTLDGANVEI +++GEEN F+FG EQV L + D K D + +
Sbjct: 653 GALTVGTLDGANVEIAEQVGEENIFIFGHTVEQVKALLAKGYDPVKWRKKDKVLDAVLKE 712
Query: 598 IRSGAFGSYD---YNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDQKKWL 654
+ SG + D ++ +L SL+ GD +LV DF +Y+EAQ +VD Y+DQ+ W
Sbjct: 713 LESGKYSDGDKHAFDQMLHSLKQG-----GDPYLVLADFAAYVEAQKQVDALYRDQEAWT 767
Query: 655 KMSILSTAGSGKFSSDRTIAQYAKEIW 681
+ +IL+TA G FSSDR+I Y IW
Sbjct: 768 RAAILNTARCGMFSSDRSIRDYQARIW 794
>gnl|CDD|223136 COG0058, GlgP, Glucan phosphorylase [Carbohydrate transport and
metabolism].
Length = 750
Score = 694 bits (1794), Expect = 0.0
Identities = 296/687 (43%), Positives = 396/687 (57%), Gaps = 70/687 (10%)
Query: 1 MATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSV 60
A L LP GYGLRYRYG F+Q Q E+ ++WL+ +PWE +R
Sbjct: 128 AADLGLPLTGYGLRYRYGYFRQSDVDGWQVELPDEWLKYGNPWEFLRDA----------- 176
Query: 61 MVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYES 120
+ V YD+P+PGY ++LRLW A+ L FN G+ ++
Sbjct: 177 ----------------EGVPYDVPVPGYDN-RVVTLRLWQAQVGRVPLYLLDFNVGENKN 219
Query: 121 AAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFP 180
A+ I VLYPGDS E LRLKQ++FL SA +QD++ R
Sbjct: 220 ------DARNITRVLYPGDSKE----LRLKQEYFLGSAGVQDILARGH--LEHHDLDVLA 267
Query: 181 SKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQA 240
LNDTHP LAIPELMRLL+DEEGL WDEAW+I +T YTNHT LPEALE W
Sbjct: 268 DH----LNDTHPALAIPELMRLLIDEEGLSWDEAWEIVRKTFVYTNHTPLPEALETWPVE 323
Query: 241 VMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSA 300
+ KLLPRH++II EI+ RF+ VR L I ++ V MA L +V +
Sbjct: 324 LFKKLLPRHLQIIYEINARFLPEVRLL--YLGDLIRRGSPIEE------VNMAVLALVGS 375
Query: 301 HTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKT 360
H+VNGV++LHS++ K FAD+ L+P K+ N TNGITPRRWL NP L+ ++ + +
Sbjct: 376 HSVNGVSKLHSELSKKMWFADFHGLYPEKINNVTNGITPRRWLAPANPGLADLLDEKIG- 434
Query: 361 DQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVK 420
D+W+ +LD+L L FAD+ + K +KK LA+ I TG+ +DPN+LFD Q +
Sbjct: 435 DEWLNDLDILDELLWFADDKAFRELIAEIKRENKKRLAEEIADRTGIEVDPNALFDGQAR 494
Query: 421 RIHEYKRQLLNILGAIYRYKKLKEMSPQERKKTTPRTIMI-GGKAFATYTNAKRIVKLVN 479
RIHEYKRQLLN+L Y+ LKE PR +I GKA AK I+KL+N
Sbjct: 495 RIHEYKRQLLNLLDIERLYRILKE-------DWVPRVQIIFAGKAHPADYAAKEIIKLIN 547
Query: 480 DVGEVVNTDPEVNSYLKVVFVPNYNVSVAELLIPGSELSQHISTAGMEASGTSNMKFSLN 539
DV +V+N + LKVVF+PNY+VS+AELLIP +++ + I TAG EASGTSNMK +LN
Sbjct: 548 DVADVIN------NKLKVVFLPNYDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALN 601
Query: 540 GCLIIGTLDGANVEIRQEIGEENFFLFGAVAEQVPKLRKERED---GLFKPDPRFEEAKQ 596
G L +GTLDGANVEI + +G EN ++FG E+V LR + D ++ + +
Sbjct: 602 GALTLGTLDGANVEIYEHVGGENGWIFGETVEEVDALRADGYDPNALYYELENEVKPVLD 661
Query: 597 FIRSGAFGSYDYNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDQKKWLKM 656
I G F + + ++ D +V YDF +Y+ AQ+ VD Y+DQ+ W K
Sbjct: 662 EIIDGRFSPGWKSRFKNLIDSLLPKFGTDRMMVLYDFKAYVPAQEEVDALYRDQEAWTKK 721
Query: 657 SILSTAGSGKFSSDRTIAQYAKEIWNI 683
+IL+ A SG FSSDRTI +YA EIW+I
Sbjct: 722 AILNIANSGLFSSDRTIREYAGEIWHI 748
>gnl|CDD|184948 PRK14986, PRK14986, glycogen phosphorylase; Provisional.
Length = 815
Score = 678 bits (1750), Expect = 0.0
Identities = 310/695 (44%), Positives = 447/695 (64%), Gaps = 25/695 (3%)
Query: 1 MATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSV 60
+ATL LP GYG+RY YG+FKQ I Q+E + WLE +PWE RH+ + VRF G +
Sbjct: 137 LATLGLPGRGYGIRYDYGMFKQNIVNGRQKESPDYWLEYGNPWEFKRHNTRYKVRFGGRI 196
Query: 61 MVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYES 120
TR W+ E + AVAYD IPGY T T +LRLW A+AS+E NL +FN G Y +
Sbjct: 197 QQEGKKTR-WIETEEILAVAYDQIIPGYDTDATNTLRLWSAQASSE-INLGKFNQGDYFA 254
Query: 121 AAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFP 180
A + + ++ + VLYP DST G+ LRL+Q++FL SA++QD++ R + + +
Sbjct: 255 AVEDKNHSENVSRVLYPDDSTYSGRELRLRQEYFLVSATVQDILSR--HYQLHKTYDNLA 312
Query: 181 SKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQA 240
K+A+ LNDTHP L+IPELMRLL+DE WD+A+++ + +YTNHT++ EALE W
Sbjct: 313 DKIAIHLNDTHPVLSIPELMRLLIDEHKFSWDDAFEVCCQVFSYTNHTLMSEALETWPVD 372
Query: 241 VMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILD-NNPKKPVVRMANLCVVS 299
++ K+LPRH++II EI+ F+ ++ + + I+D +N ++ VRMA L VV
Sbjct: 373 MLGKILPRHLQIIFEINDYFLKTLQEQYPNDTDLLGRASIIDESNGRR--VRMAWLAVVV 430
Query: 300 AHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLK 359
+H VNGV++LHS+++ LFAD+ ++P + N TNG+TPRRWL NP LS ++ + +
Sbjct: 431 SHKVNGVSELHSNLMVQSLFADFAKIFPGRFCNVTNGVTPRRWLALANPSLSAVLDEHIG 490
Query: 360 TDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQV 419
W T+L L L+Q D + AK+ +KK LA+YI + V ++P +LFD+Q+
Sbjct: 491 R-TWRTDLSQLSELKQHCDYPMVNHAVRQAKLENKKRLAEYIAQQLNVVVNPKALFDVQI 549
Query: 420 KRIHEYKRQLLNILGAIYRYKKLKEMSPQERKKTTPRTIMIGGKAFATYTNAKRIVKLVN 479
KRIHEYKRQL+N+L I RY ++K + PR + GKA + Y AK I+ L+N
Sbjct: 550 KRIHEYKRQLMNVLHVITRYNRIKADPDAKW---VPRVNIFAGKAASAYYMAKHIIHLIN 606
Query: 480 DVGEVVNTDPEVNSYLKVVFVPNYNVSVAELLIPGSELSQHISTAGMEASGTSNMKFSLN 539
DV +V+N DP++ LKVVF+PNY+VS+A+L+IP ++LS+ IS AG EASGTSNMKF+LN
Sbjct: 607 DVAKVINNDPQIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALN 666
Query: 540 GCLIIGTLDGANVEIRQEIGEENFFLFGAVAEQVPKLRKE----REDGLFKPDPRFEEAK 595
G L IGTLDGANVE+ + +GEEN F+FG AE+V LR++ RE ++ D +
Sbjct: 667 GALTIGTLDGANVEMLEHVGEENIFIFGNTAEEVEALRRQGYKPRE--YYEKDEELHQVL 724
Query: 596 QFIRSGAFGSYD---YNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDQKK 652
I SG F + Y L+DSL GD++ V D+ SY++ QD+VD+ Y++Q++
Sbjct: 725 TQIGSGVFSPEEPGRYRDLVDSL-----INFGDHYQVLADYRSYVDCQDKVDELYRNQEE 779
Query: 653 WLKMSILSTAGSGKFSSDRTIAQYAKEIWNITECR 687
W + ++L+ A G FSSDRTI +YA EIW+I R
Sbjct: 780 WTRKAMLNIANMGYFSSDRTIKEYADEIWHIDPVR 814
>gnl|CDD|233723 TIGR02094, more_P_ylases, alpha-glucan phosphorylases. This family
consists of known phosphorylases, and homologs believed
to share the function of using inorganic phosphate to
cleave an alpha 1,4 linkage between the terminal glucose
residue and the rest of the polymer (maltodextrin,
glycogen, etc.). The name of the glucose storage polymer
substrate, and therefore the name of this enzyme,
depends on the chain lengths and branching patterns. A
number of the members of this family have been shown to
operate on small maltodextrins, as may be obtained by
utilization of exogenous sources. This family represents
a distinct clade from the related family modeled by
TIGR02093/pfam00343.
Length = 601
Score = 109 bits (274), Expect = 6e-25
Identities = 120/573 (20%), Positives = 216/573 (37%), Gaps = 122/573 (21%)
Query: 4 LNLPAWGYGLRYRYGLFKQKITKQG-QEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMV 62
L LP GL Y+ G F+Q++ + G Q+E + + P E V
Sbjct: 35 LGLPLVAVGLLYKQGYFRQRLDEDGWQQEAYPNNDFESLPIEKVLDT------------- 81
Query: 63 NPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAA 122
G+ ++ + I G + ++W + L D +
Sbjct: 82 ---------DGKWLKI---SVRIRG----RDVYAKVWRVQVGRVPLYLL---DTNIPENS 122
Query: 123 QLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSK 182
+ + I LY GD +R+ Q+ L ++ +
Sbjct: 123 EDD---RWITGRLYGGDKE-----MRIAQEIVLGIGGVR-ALRALGIDPDV--------- 164
Query: 183 VAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVM 242
LN+ H E +R L+ +GL ++EAW+ ++ +T HT +P + + + +M
Sbjct: 165 --YHLNEGHAAFVTLERIRELI-AQGLSFEEAWEAVRKSSLFTTHTPVPAGHDVFPEDLM 221
Query: 243 WK-LLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAH 301
K + ++ +A+ R D M L + +
Sbjct: 222 RKYFGDYAANLGLPREQ-LLALGRENPDD----------------PEPFNMTVLALRLSR 264
Query: 302 TVNGVAQLHSDILKADLFADYVSLWPNKLQNK------TNGITPRRWLRFCNPELSKIIT 355
NGV++LH ++ ++ L+P + + TNG+ W PEL +
Sbjct: 265 IANGVSKLHGEV-SRKMWQF---LYPGYEEEEVPIGYVTNGVHNPTW---VAPELRDLYE 317
Query: 356 KWLKTD--QWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGV------ 407
++L + + + + +L + D EL WE + K L DYI R
Sbjct: 318 RYLGENWRELLADEELWEAIDDIPDE-EL---WE-VHLKLKARLIDYIRRRLRERWLRRG 372
Query: 408 -----------TIDPNSLFDIQVKRIHEYKRQLLNILGAIYRYKKLKEMSPQERKKTTPR 456
+DP+ L +R YKR L I + R ++ ++ ER P
Sbjct: 373 ADAAILMATDRFLDPDVLTIGFARRFATYKRADL-IFRDLERLARI--LNNPER----PV 425
Query: 457 TIMIGGKAFATYTNAKRIVKLVNDVGEVVNTDPEVNSYLKVVFVPNYNVSVAELLIPGSE 516
I+ GKA K I++ + + + PE ++VF+ NY++++A L+ G +
Sbjct: 426 QIVFAGKAHPADGEGKEIIQRIVEFSK----RPEFRG--RIVFLENYDINLARYLVSGVD 479
Query: 517 LSQHISTAGMEASGTSNMKFSLNGCLIIGTLDG 549
+ + +EASGTS MK ++NG L + LDG
Sbjct: 480 VWLNNPRRPLEASGTSGMKAAMNGVLNLSILDG 512
>gnl|CDD|99995 cd04299, GT1_Glycogen_Phosphorylase_like, This family is most
closely related to the oligosaccharide phosphorylase
domain family and other unidentified sequences.
Oligosaccharide phosphorylase catalyzes the breakdown of
oligosaccharides into glucose-1-phosphate units. They
are important allosteric enzymes in carbohydrate
metabolism. The members of this family are found in
bacteria and Archaea.
Length = 778
Score = 98.0 bits (245), Expect = 4e-21
Identities = 134/592 (22%), Positives = 225/592 (38%), Gaps = 158/592 (26%)
Query: 4 LNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDV-------VFPVRF 56
L LP G GL YR G F+Q++ G W+ + V + PVR
Sbjct: 122 LGLPLVGVGLLYRQGYFRQRLDADG--------------WQQETYPVNDFEQLPLEPVR- 166
Query: 57 FGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDG 116
+ +G V + +PG T+ R+W A+ L +
Sbjct: 167 ------DADGEPVRV----------SVELPGR----TVYARVWKAQVGRVPLYLLDTDIP 206
Query: 117 QYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSG--- 173
+ + I LY GD R++Q+ L G
Sbjct: 207 ENSPDDR------GITDRLYGGDQE-----TRIQQEILL-----------------GIGG 238
Query: 174 ----RQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTV 229
R P+ +N+ H E +R LM E GL +DEA + + +T HT
Sbjct: 239 VRALRALGIKPT--VYHMNEGHAAFLGLERIRELMAEGGLSFDEALEAVRASTVFTTHTP 296
Query: 230 LPEALEKWSQAVMWKLL---PRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPK 286
+P +++ ++ + R + + + RF+A+ R D
Sbjct: 297 VPAGHDRFPPDLVERYFGPYARELGLSRD---RFLALGRENPGD---------------D 338
Query: 287 KPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWP------NKLQNKTNGITPR 340
MA L + A NGV++LH ++ ++FA LWP + + TNG+
Sbjct: 339 PEPFNMAVLALRLAQRANGVSRLHGEV-SREMFAG---LWPGFPVEEVPIGHVTNGVHVP 394
Query: 341 RWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADNT---ELQAEWESAKMASKKHL 397
W+ PE+ ++ ++L W L + D+ EL WE + ++ L
Sbjct: 395 TWV---APEMRELYDRYL-GGDW-RERPTDPELWEAVDDIPDEEL---WE-VRQQLRRRL 445
Query: 398 ADYI-------WRVTGVT----------IDPNSL---FDIQVKRIHEYKRQLLNILGAIY 437
+++ W G + +DPN L F +R YKR L +L
Sbjct: 446 IEFVRRRLRRQWLRRGASAEEIGEADDVLDPNVLTIGF---ARRFATYKRATL-LLRDPE 501
Query: 438 RYKKLKEMSPQERKKTTPRTIMIGGKAFATYTNAKRIVKLVNDVGEVVNTDPEVNSYLKV 497
R K+L ++ ER P + GKA K +++ + + PE ++
Sbjct: 502 RLKRL--LNDPER----PVQFIFAGKAHPADEPGKELIQEIVEFSR----RPEFRG--RI 549
Query: 498 VFVPNYNVSVAELLIPGSELSQHISTAGMEASGTSNMKFSLNGCLIIGTLDG 549
VF+ +Y++++A L+ G ++ + +EASGTS MK +LNG L + LDG
Sbjct: 550 VFLEDYDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDG 601
>gnl|CDD|223265 COG0187, GyrB, Type IIA topoisomerase (DNA gyrase/topo II,
topoisomerase IV), B subunit [DNA replication,
recombination, and repair].
Length = 635
Score = 32.9 bits (76), Expect = 0.74
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 16/79 (20%)
Query: 414 LFDIQVKRIHEY------KRQLLNILGA-----IYRYKKLKEMSPQERKKTT--PRTIMI 460
L+ ++ + Y +LL LG I RYK L EM+P + +TT P T
Sbjct: 534 LYKVKKGKKTFYAYDDEELEKLLERLGKKKGYEIQRYKGLGEMNPDQLWETTMDPETRR- 592
Query: 461 GGKAFATYTNAKRIVKLVN 479
T +A ++ +
Sbjct: 593 --LLQVTIEDADEADEIFS 609
>gnl|CDD|227441 COG5110, RPN1, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 881
Score = 31.8 bits (72), Expect = 1.7
Identities = 34/187 (18%), Positives = 61/187 (32%), Gaps = 29/187 (15%)
Query: 334 TNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMAS 393
T P ++LR +L +I KWL+ ++ D+L L
Sbjct: 83 TAVPKPLKFLRPNYLDLLEIYDKWLEGNKKRWLADILSALCMVYSEN------------G 130
Query: 394 KKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNILGAIYRYKKLKEMSPQERKKT 453
K Y R+ G ID HEY R L + + + + +
Sbjct: 131 KHKSLAY--RLEGNIIDLKEWG-------HEYVRHLAGEIAEVKNDQNEMDAPSFADTRD 181
Query: 454 TPRTIMIGGKAFATYTNAKRIVKLVNDVGEVVNTDP--EVNSYLKVVFVPNYNVSVAELL 511
I+ F + + L+ +VG + + ++Y +V Y LL
Sbjct: 182 LGLEIV---PFFLKHNAEFDAIDLLVEVGGIEKVLDFVDTHNYNRVCL---YLEDCVPLL 235
Query: 512 IPGSELS 518
P +++
Sbjct: 236 PPPEDVA 242
>gnl|CDD|223945 COG1013, PorB, Pyruvate:ferredoxin oxidoreductase and related
2-oxoacid:ferredoxin oxidoreductases, beta subunit
[Energy production and conversion].
Length = 294
Score = 30.7 bits (70), Expect = 2.7
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 591 FEEAKQFIRSGAFGSYDYNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDQ 650
EEAK + +G + Y Y P E G + Y YLE ++R K
Sbjct: 217 IEEAKLAVETGYWPLYRYEPGKAEEEKGKDIPIGIF----YPVEEYLEYEERFKHLTKSN 272
Query: 651 KKWLK 655
+ ++
Sbjct: 273 PELIQ 277
>gnl|CDD|226112 COG3584, COG3584, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 109
Score = 28.9 bits (65), Expect = 2.9
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 475 VKLVNDVG-EVVNTDPEVNSYLKVVFVPNYNVSVAE 509
+ L + G +V+ DP V V+VP Y V+VAE
Sbjct: 41 IDLRRNPGYKVIAVDPSVIPLGSRVYVPGYGVAVAE 76
>gnl|CDD|190562 pfam03201, HMD, H2-forming N5,N10-methylene-tetrahydromethanopterin
dehydrogenase.
Length = 98
Score = 28.5 bits (64), Expect = 3.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 523 TAGMEASGTSNMKFSLNGCLIIGTLDGANVEIRQEI 558
+ ME SG M+ +L+ ++G+ D N QEI
Sbjct: 52 ASLMETSGIDGMEEALDPEALLGSADSMNFGELQEI 87
>gnl|CDD|218748 pfam05787, DUF839, Bacterial protein of unknown function (DUF839).
This family consists of several bacterial proteins of
unknown function that contain a predicted beta-propeller
repeats.
Length = 515
Score = 30.2 bits (68), Expect = 4.3
Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 30/158 (18%)
Query: 455 PRTIMIGGKAFATYTNAKRIVKLV-------NDVGEVVNTDPEVNSYLKV-----VFVPN 502
P T GG+ + TN + K+ N G++V DP + +F+
Sbjct: 350 PVTGFGGGEVYFVLTNNGKRSKIDSANPRAKNGYGQIVRYDPATRDHTATKFTWDLFLVA 409
Query: 503 YNVSVAELLIPGSELSQHISTAGMEASGTSNMKFSLNGCLIIGTLDGANVEIRQEIGEEN 562
+ + A++ G ++AG + N+ F G L I T DG
Sbjct: 410 GDPTDAKVFSAG-------TSAGNDFESPDNITFDPAGRLWICT-DGNGS---------- 451
Query: 563 FFLFGAVAEQVPKLRKEREDGLFKPDPRFEEAKQFIRS 600
R + +G+ P E K F+
Sbjct: 452 TLGVTPEGNVYNLARNDGNNGMLTEGPIRGEVKLFLTG 489
>gnl|CDD|173922 cd02171, G3P_Cytidylyltransferase, glycerol-3-phosphate
cytidylyltransferase. Glycerol-3-phosphate
cytidylyltransferase,(CDP-glycerol pyrophosphorylase).
Glycerol-3-phosphate cytidyltransferase acts in pathways
of teichoic acid biosynthesis. Teichoic acids are
substituted polymers, linked by phosphodiester bonds, of
glycerol, ribitol, etc. An example is poly(glycerol
phosphate), the major teichoic acid of the Bacillus
subtilis cell wall. Most, but not all, species encoding
proteins in this family are Gram-positive bacteria. A
closely related protein assigned a different function
experimentally is a human ethanolamine-phosphate
cytidylyltransferase.
Length = 129
Score = 29.0 bits (65), Expect = 4.3
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 461 GGKAFATYTNAKRIVKLVNDVGEVVNTDPEVNSYLKVVFVPNYNVSV 507
G KA Y I++ + V V+ PE N K+ + YNV V
Sbjct: 45 GKKAVIPYEQRAEILESIRYVDLVI---PETNWEQKIEDIKKYNVDV 88
>gnl|CDD|215600 PLN03141, PLN03141, 3-epi-6-deoxocathasterone 23-monooxygenase;
Provisional.
Length = 452
Score = 30.1 bits (68), Expect = 4.8
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 484 VVNTDPEVNSYL----KVVFVPNYNVSVAELL 511
+V+TD EVN + FVP Y S+ EL+
Sbjct: 58 IVSTDAEVNKVVLQSDGNAFVPAYPKSLTELM 89
>gnl|CDD|99959 cd01635, Glycosyltransferase_GTB_type, Glycosyltransferases
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. The acceptor molecule can be a lipid,
a protein, a heterocyclic compound, or another
carbohydrate residue. The structures of the formed
glycoconjugates are extremely diverse, reflecting a wide
range of biological functions. The members of this
family share a common GTB topology, one of the two
protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility.
Length = 229
Score = 29.5 bits (66), Expect = 5.5
Identities = 26/149 (17%), Positives = 43/149 (28%), Gaps = 28/149 (18%)
Query: 418 QVKRIHEYKRQLLNILGAIYRYKKLKEMSPQERKKTTPRTIMIGGKAFATYTNAKRIVKL 477
V R+ K + I + LKE R I G + L
Sbjct: 109 FVGRLAPEK----GLDDLIEAFALLKE-----RGPDLKLVIAGDGPEREYLEELLAALLL 159
Query: 478 VNDVGEVVNTDPEVNSYLKVVFVPNYNVSVAELLIPGSELSQHISTAGMEASGTSNMKFS 537
++ V + DPE + LL+ +++ + + E G ++
Sbjct: 160 LDRVIFLGGLDPE---------------ELLALLLAAADVF--VLPSLREGFGLVVLEAM 202
Query: 538 LNGCLIIGTLDGANVEIRQEIGEENFFLF 566
G +I T G EI L
Sbjct: 203 ACGLPVIATDVGGPPEI--VEDGLTGLLV 229
>gnl|CDD|235501 PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed.
Length = 631
Score = 29.3 bits (67), Expect = 7.4
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 436 IYRYKKLKEMSPQERKKTT--PRTI 458
I R+K L EM+P + +TT P T
Sbjct: 565 IQRFKGLGEMNPDQLWETTMDPETR 589
>gnl|CDD|237720 PRK14463, PRK14463, ribosomal RNA large subunit methyltransferase
N; Provisional.
Length = 349
Score = 29.0 bits (65), Expect = 8.8
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 450 RKKTTPRTIMIGGKAFATYTNAKRIVKLVNDVGEVVNTDP 489
R+K T +MI G + +AKR+V+L++D+ VN P
Sbjct: 248 RRKITIEYVMIRG-LNDSLEDAKRLVRLLSDIPSKVNLIP 286
>gnl|CDD|225225 COG2350, COG2350, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 92
Score = 27.3 bits (61), Expect = 8.9
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 626 YFLVGYDFPSYLEAQDRVDQAYKDQKKWLKMS-ILSTAG 663
Y +V D+P+ LE + V A+ + K L L T+G
Sbjct: 3 YAIVALDYPNPLEKRLAVRPAHLARLKQLYAEGRLLTSG 41
>gnl|CDD|214659 smart00433, TOP2c, TopoisomeraseII. Eukaryotic DNA topoisomerase
II, GyrB, ParE.
Length = 594
Score = 29.1 bits (66), Expect = 9.1
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 424 EYKRQLLNILG-----AIYRYKKLKEMSPQERKKTT--PRTIMI 460
EY++ L G I RYK L EM+ + +TT P +
Sbjct: 516 EYEKWLEKTEGNKSKYEIQRYKGLGEMNADQLWETTMDPERRTL 559
>gnl|CDD|215444 PLN02830, PLN02830, UDP-sugar pyrophosphorylase.
Length = 615
Score = 29.3 bits (66), Expect = 9.1
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 490 EVNSYLKVVFVPNYNVSVAEL---LIPGS-ELSQHISTAGMEASGTSNMKFSLNGCLIIG 545
EV ++V P + ++ +EL + PGS ++SQ ST +E + SL+G L++
Sbjct: 497 EVEVGPRIVLKPAFALTFSELKKKVAPGSVKISQR-STLVLEGADIVIENLSLDGALVVR 555
Query: 546 TLDGANVEIR 555
+ GA V +
Sbjct: 556 AVPGAEVTVG 565
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.407
Gapped
Lambda K H
0.267 0.0803 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 35,763,421
Number of extensions: 3526389
Number of successful extensions: 2983
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2926
Number of HSP's successfully gapped: 38
Length of query: 689
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 585
Effective length of database: 6,324,786
Effective search space: 3699999810
Effective search space used: 3699999810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.5 bits)