RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 005595
(689 letters)
>d1ygpa_ c.87.1.4 (A:) Glycogen phosphorylase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 876
Score = 769 bits (1987), Expect = 0.0
Identities = 330/707 (46%), Positives = 454/707 (64%), Gaps = 32/707 (4%)
Query: 1 MATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSV 60
MAT +PAWGYGLRY YG+F QKI Q E + WL +PWE+ R++V PV F+G V
Sbjct: 174 MATEGIPAWGYGLRYEYGIFAQKIIDGYQVETPDYWLNSGNPWEIERNEVQIPVTFYGYV 233
Query: 61 MVNPNGTR-----KWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFND 115
G +W+GGE V AVAYD P+PG+KT N +LRLW A+ + +F+L +FN+
Sbjct: 234 DRPEGGKTTLSASQWIGGERVLAVAYDFPVPGFKTSNVNNLRLWQARPT-TEFDLNKFNN 292
Query: 116 GQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQ 175
G Y+++ RA+ I AVLYP D+ +GK LRLKQQ+F C+ASL D++ RFK KS R
Sbjct: 293 GDYKNSVAQQQRAESITAVLYPNDNFAQGKELRLKQQYFWCAASLHDILRRFK--KSKRP 350
Query: 176 WSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALE 235
W+EFP +VA+QLNDTHPTLAI EL R+L+D E L W EAWDI T+T AYTNHTV+ EALE
Sbjct: 351 WTEFPDQVAIQLNDTHPTLAIVELQRVLVDLEKLDWHEAWDIVTKTFAYTNHTVMQEALE 410
Query: 236 KWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANL 295
KW + + LLPRH+EII +I+ F+ V + + I++ N + +RMA L
Sbjct: 411 KWPRRLFGHLLPRHLEIIYDINWFFLEDVAKKFPKDVDLLSRISIIEENSPERQIRMAFL 470
Query: 296 CVVSAHTVNGVAQLHSDILKADLFADYVSLW-PNKLQNKTNGITPRRWLRFCNPELSKII 354
+V +H VNGV +LHS+++K +F D++ + P+K N TNGITPRRWL+ NP L+K+I
Sbjct: 471 AIVGSHKVNGVVELHSELIKTTIFKDFIKFYGPSKFVNVTNGITPRRWLKQANPSLAKLI 530
Query: 355 TKWLK--TDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWR------VTG 406
++ L T++++ ++ L L ++ ++ E +W K+ +K L D I + +
Sbjct: 531 SETLNDPTEEYLLDMAKLTQLEKYVEDKEFLKKWNQVKLNNKIRLVDLIKKENDGVDIIN 590
Query: 407 VTIDPNSLFDIQVKRIHEYKRQLLNILGAIYRYKKLKEMSPQER------KKTTPRTIMI 460
++LFD+QVKRIHEYKRQ LN+ G IYRY +K M +K + +
Sbjct: 591 REYLDDTLFDMQVKRIHEYKRQQLNVFGIIYRYLAMKNMLKNGASIEEVARKYPRKVSIF 650
Query: 461 GGKAFATYTNAKRIVKLVNDVGEVVNTDPEVNSYLKVVFVPNYNVSVAELLIPGSELSQH 520
GGK+ Y AK I+KL+N V ++VN D + LKVVFV +YNVS AE++IP S+LS+H
Sbjct: 651 GGKSAPGYYMAKLIIKLINCVADIVNNDESIEHLLKVVFVADYNVSKAEIIIPASDLSEH 710
Query: 521 ISTAGMEASGTSNMKFSLNGCLIIGTLDGANVEIRQEIGEENFFLFGAVAEQVPKLRKER 580
ISTAG EASGTSNMKF +NG LIIGT+DGANVEI +EIGE+N FLFG ++E V +LR
Sbjct: 711 ISTAGTEASGTSNMKFVMNGGLIIGTVDGANVEITREIGEDNVFLFGNLSENVEELRYNH 770
Query: 581 EDGLFKPDPRFEEAKQFIRSGAFGSYD---YNPLLDSLEGNTGYGRGDYFLVGYDFPSYL 637
+ + +I SG F + + PL+DS++ + GDY+LV DF SYL
Sbjct: 771 QYHPQDLPSSLDSVLSYIESGQFSPENPNEFKPLVDSIKYH-----GDYYLVSDDFESYL 825
Query: 638 EAQDRVDQAYKDQK-KWLKMSILSTAGSGKFSSDRTIAQYAKEIWNI 683
+ VDQ + +Q+ +WLK S+LS A G FSSDR I +Y+ IWN+
Sbjct: 826 ATHELVDQEFHNQRSEWLKKSVLSLANVGFFSSDRCIEEYSDTIWNV 872
>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 824
Score = 752 bits (1943), Expect = 0.0
Identities = 329/698 (47%), Positives = 447/698 (64%), Gaps = 24/698 (3%)
Query: 1 MATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSV 60
MATL L A+GYG+RY +G+F QKI Q E A+DWL +PWE R + PV F+G V
Sbjct: 136 MATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYGRV 195
Query: 61 MVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYES 120
+ + KWV +VV A+ YD P+PGY+ ++RLW AKA DFNL FN G Y
Sbjct: 196 -EHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAP-NDFNLKDFNVGGYIQ 253
Query: 121 AAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSG------R 174
A + A+ I VLYP D+ EGK LRLKQ++F+ +A+LQD+I RFK K G
Sbjct: 254 AVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPVRT 313
Query: 175 QWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEAL 234
+ FP KVA+QLNDTHP+LAIPELMR+L+D E L WD+AW++T +T AYTNHTVLPEAL
Sbjct: 314 NFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVLPEAL 373
Query: 235 EKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMAN 294
E+W ++ LLPRH++II EI++RF+ V + ++ M +++ K + MA+
Sbjct: 374 ERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKRI-NMAH 432
Query: 295 LCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKII 354
LC+ +H VNGVA++HS+ILK +F D+ L P+K QNKTNGITPRRWL CNP L++II
Sbjct: 433 LCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEII 492
Query: 355 TKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSL 414
+ + ++++++LD L L + D+ + K +K A Y+ R V I+PNSL
Sbjct: 493 AERI-GEEYISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSL 551
Query: 415 FDIQVKRIHEYKRQLLNILGAIYRYKKLKEMSPQERKKTTPRTIMIGGKAFATYTNAKRI 474
FD+QVKRIHEYKRQLLN L I Y ++K+ K PRT+MIGGKA Y AK I
Sbjct: 552 FDVQVKRIHEYKRQLLNCLHVITLYNRIKKE---PNKFVVPRTVMIGGKAAPGYHMAKMI 608
Query: 475 VKLVNDVGEVVNTDPEVNSYLKVVFVPNYNVSVAELLIPGSELSQHISTAGMEASGTSNM 534
+KL+ +G+VVN DP V L+V+F+ NY VS+AE +IP ++LS+ ISTAG EASGT NM
Sbjct: 609 IKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNM 668
Query: 535 KFSLNGCLIIGTLDGANVEIRQEIGEENFFLFGAVAEQVPKLRKEREDG--LFKPDPRFE 592
KF LNG L IGT+DGANVE+ +E GEENFF+FG E V +L + + + P
Sbjct: 669 KFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQEYYDRIPELR 728
Query: 593 EAKQFIRSGAFGSYDYN---PLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKD 649
+ + + SG F + +++ L + D F V D+ Y++ Q+RV YK+
Sbjct: 729 QIIEQLSSGFFSPKQPDLFKDIVNMLMHH------DRFKVFADYEEYVKCQERVSALYKN 782
Query: 650 QKKWLKMSILSTAGSGKFSSDRTIAQYAKEIWNITECR 687
++W +M I + A SGKFSSDRTIAQYA+EIW + R
Sbjct: 783 PREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEPSR 820
>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP)
{Escherichia coli [TaxId: 562]}
Length = 796
Score = 731 bits (1888), Expect = 0.0
Identities = 300/688 (43%), Positives = 419/688 (60%), Gaps = 24/688 (3%)
Query: 1 MATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSV 60
MAT+ A GYGL Y+YGLF+Q Q E +DW PW + V G V
Sbjct: 126 MATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRSNYPWFRHNEALDVQVGIGGKV 185
Query: 61 MVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYES 120
+ +W + A+D+P+ GY+ LRLW A A F+L +FNDG +
Sbjct: 186 TKDG----RWEPEFTITGQAWDLPVVGYRNGVAQPLRLWQATH-AHPFDLTKFNDGDFLR 240
Query: 121 AAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFP 180
A Q A+++ VLYP D+ EGK LRL QQ+F C+ S+ D++ R +GR+ E
Sbjct: 241 AEQQGINAEKLTKVLYPNDNAFEGKKLRLMQQYFQCACSVADILRRHH--LAGRKLHELA 298
Query: 181 SKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQA 240
+QLNDTHPT+AIPEL+R+L+DE + WD+AW IT++T AYTNHT++PEALE+W
Sbjct: 299 DYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALERWDVK 358
Query: 241 VMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSA 300
++ LLPRHM+II EI+ RF +V T E + ++ + V MANLCVV
Sbjct: 359 LVKGLLPRHMQIINEINTRFKTLVEKTWPGDEKVWAKLAVVHDKQ----VHMANLCVVGG 414
Query: 301 HTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKT 360
VNGVA LHSD++ DLF +Y LWPNK N TNGITPRRW++ CNP L+ ++ K L+
Sbjct: 415 FAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKSLQ- 473
Query: 361 DQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVK 420
+W +LD L+ L +FAD+ + + ++ K A+K LA+++ TG+ I+P ++FDIQ+K
Sbjct: 474 KEWANDLDQLINLEKFADDAKFRQQYREIKQANKVRLAEFVKVRTGIEINPQAIFDIQIK 533
Query: 421 RIHEYKRQLLNILGAIYRYKKLKEMSPQERKKTTPRTIMIGGKAFATYTNAKRIVKLVND 480
R+HEYKRQ LN+L + YK+++E +R PR + G KA Y AK I+ +N
Sbjct: 534 RLHEYKRQHLNLLHILALYKEIRENPQADR---VPRVFLFGAKAAPGYYLAKNIIFAINK 590
Query: 481 VGEVVNTDPEVNSYLKVVFVPNYNVSVAELLIPGSELSQHISTAGMEASGTSNMKFSLNG 540
V +V+N DP V LKVVF+P+Y VS AE LIP +++S+ ISTAG EASGT NMK +LNG
Sbjct: 591 VADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNG 650
Query: 541 CLIIGTLDGANVEIRQEIGEENFFLFGAVAEQVPKLRKEREDG--LFKPDPRFEEAKQFI 598
L +GTLDGANVEI +++GEEN F+FG EQV + + D K D + + +
Sbjct: 651 ALTVGTLDGANVEIAEKVGEENIFIFGHTVEQVKAILAKGYDPVKWRKKDKVLDAVLKEL 710
Query: 599 RSGAFG---SYDYNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDQKKWLK 655
SG + + ++ +L S+ G GD +LV DF +Y+EAQ +VD Y+DQ+ W +
Sbjct: 711 ESGKYSDGDKHAFDQMLHSI----GKQGGDPYLVMADFAAYVEAQKQVDVLYRDQEAWTR 766
Query: 656 MSILSTAGSGKFSSDRTIAQYAKEIWNI 683
+IL+TA G FSSDR+I Y IW
Sbjct: 767 AAILNTARCGMFSSDRSIRDYQARIWQA 794
>d1a2za_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate
aminopeptidase) {Archaeon Thermococcus litoralis [TaxId:
2265]}
Length = 220
Score = 30.0 bits (67), Expect = 0.70
Identities = 11/73 (15%), Positives = 24/73 (32%), Gaps = 1/73 (1%)
Query: 601 GAFGSYDYNPLLDSLEGNTGYGRGDYFLVGYDFP-SYLEAQDRVDQAYKDQKKWLKMSIL 659
FG NP + G+ + G P S A + + ++ K + +++
Sbjct: 10 EPFGGDSKNPTEQIAKYFDRKQIGNAMVYGRVLPVSVKRATIELKRYLEEIKPEIVINLG 69
Query: 660 STAGSGKFSSDRT 672
+ +R
Sbjct: 70 LAPTYSNITVERI 82
>d2b0ja1 a.100.1.11 (A:243-344) 5,10-methenyltetrahydromethanopterin
hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii
[TaxId: 2190]}
Length = 102
Score = 27.9 bits (62), Expect = 1.5
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 526 MEASGTSNMKFSLNGCLIIGTLDGANVEIRQEI 558
M+ G +NM+ +L+ ++GT D EI
Sbjct: 55 MKEKGIANMEEALDPAALLGTADSMCFGPLAEI 87
>d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic
enzyme {Human (Homo sapiens) [TaxId: 9606]}
Length = 259
Score = 27.4 bits (61), Expect = 5.8
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 245 LLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPK 286
LLP +E + RF ++ S LE I M I + N K
Sbjct: 33 LLPPKIETQDIQALRFHRNLKKMTSPLEKYIYIMGIQERNEK 74
>d1o0sa2 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent malic
enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}
Length = 294
Score = 27.5 bits (61), Expect = 5.9
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 245 LLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPK 286
LLP E+ R I +R +DL I + D N K
Sbjct: 66 LLPPAFMTQEQQAYRVITKLREQPNDLARYIQLDGLQDRNEK 107
>d1oy2a_ b.55.1.2 (A:) Shc adaptor protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 191
Score = 26.9 bits (59), Expect = 6.0
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 4/47 (8%)
Query: 33 AEDWLEKFSPWEVVRHDVVFPVRFFGSVMVN--PNGTRKWVGGEVVQ 77
WL +V+ V + VR+ G V V +V +
Sbjct: 19 TRGWLH--PNDKVMGPGVSYLVRYMGCVEVLQSMRALDFNTRTQVTR 63
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 137
Score = 26.5 bits (58), Expect = 6.3
Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 14/107 (13%)
Query: 476 KLVNDVGEVVNTDPEVNSYLKVV--------------FVPNYNVSVAELLIPGSELSQHI 521
+LVN+V ++ N D KV+ + + + +L I +L + +
Sbjct: 27 ELVNEVAKIENKDEIFKEIDKVIDEALKIKNKEDFGKLMTKNHELLKKLNISTPKLDRIV 86
Query: 522 STAGMEASGTSNMKFSLNGCLIIGTLDGANVEIRQEIGEENFFLFGA 568
G GC+II + E+ +E+ +E+ +F
Sbjct: 87 DIGNRFGFGAKLTGAGGGGCVIILVNEEKEKELLKELNKEDVRIFNC 133
>d1h6da2 d.81.1.5 (A:213-374) Glucose-fructose oxidoreductase
{Zymomonas mobilis [TaxId: 542]}
Length = 162
Score = 26.9 bits (58), Expect = 6.4
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 588 DPRFEEAKQFIRSGAFG 604
DP A + IR G
Sbjct: 1 DPMNRAAVKLIRENQLG 17
>d1auga_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate
aminopeptidase) {Bacillus amyloliquefaciens [TaxId:
1390]}
Length = 210
Score = 26.9 bits (59), Expect = 7.1
Identities = 12/72 (16%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Query: 601 GAFGSYDYNPLLDSLEGNTGYGRGDYFLVGYDFP-SYLEAQDRVDQAYKDQKKWLKMSIL 659
FG NP ++++ G G +V P + ++ + +A K + + + +
Sbjct: 11 DPFGGETVNPSWEAVKRLNGAAEGPASIVSEQVPTVFYKSLAVLREAIKKHQPDIIICVG 70
Query: 660 STAGSGKFSSDR 671
G + + +R
Sbjct: 71 QAGGRMQITPER 82
>d1iofa_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate
aminopeptidase) {Archaeon Pyrococcus furiosus [TaxId:
2261]}
Length = 208
Score = 26.6 bits (58), Expect = 8.5
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Query: 601 GAFGSYDYNPLLDSLEGNTGYGRGDYFLVGYDFP-SYLEAQDRVDQAYKDQKKWLKMSIL 659
FG NP + G GD + G P + +A++ +++ ++ K + + +
Sbjct: 9 EPFGGEKINPTERIAKDLDGIKIGDAQVFGRVLPVVFGKAKEVLEKTLEEIKPDIAIHVG 68
Query: 660 STAGSGKFSSDR 671
G S +R
Sbjct: 69 LAPGRSAISIER 80
>d1d4oa_ c.31.1.4 (A:) Transhydrogenase domain III (dIII) {Cow (Bos
taurus) [TaxId: 9913]}
Length = 177
Score = 26.3 bits (58), Expect = 9.2
Identities = 8/52 (15%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 482 GEVVNTDPEVNSYL-----KVVFVPNYNVSVAELLIPGSELSQHISTAGMEA 528
G + + + ++ P Y + A+ P ++L + +S G +
Sbjct: 1 GTHTEINLDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKMLSEQGKKV 52
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.407
Gapped
Lambda K H
0.267 0.0580 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,660,802
Number of extensions: 128395
Number of successful extensions: 365
Number of sequences better than 10.0: 1
Number of HSP's gapped: 338
Number of HSP's successfully gapped: 17
Length of query: 689
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 597
Effective length of database: 1,144,436
Effective search space: 683228292
Effective search space used: 683228292
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.7 bits)