Query 005598
Match_columns 689
No_of_seqs 508 out of 2901
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 01:57:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005598.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005598hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 99.9 5.4E-25 1.2E-29 270.8 32.6 280 402-681 11-313 (2102)
2 KOG0166 Karyopherin (importin) 99.9 2.6E-25 5.5E-30 242.9 23.7 279 403-681 108-394 (514)
3 PLN03200 cellulose synthase-in 99.9 4.6E-24 1E-28 262.7 33.2 279 403-682 445-766 (2102)
4 KOG4224 Armadillo repeat prote 99.9 1.9E-24 4.2E-29 221.6 19.8 280 404-684 126-409 (550)
5 KOG4224 Armadillo repeat prote 99.9 9.9E-24 2.1E-28 216.4 20.4 278 402-681 165-447 (550)
6 KOG0166 Karyopherin (importin) 99.9 5E-22 1.1E-26 217.2 25.0 281 403-683 151-439 (514)
7 COG5064 SRP1 Karyopherin (impo 99.9 8.1E-23 1.8E-27 208.2 15.3 281 403-683 113-401 (526)
8 PF04564 U-box: U-box domain; 99.9 7.7E-23 1.7E-27 170.5 5.3 73 97-169 1-73 (73)
9 COG5064 SRP1 Karyopherin (impo 99.8 2.8E-20 6.1E-25 189.7 16.9 278 403-680 156-443 (526)
10 PF05804 KAP: Kinesin-associat 99.8 2.1E-16 4.6E-21 181.9 29.4 278 402-683 288-652 (708)
11 PF05804 KAP: Kinesin-associat 99.7 1.9E-15 4.1E-20 174.1 28.1 252 420-679 265-519 (708)
12 KOG1048 Neural adherens juncti 99.7 3.5E-16 7.5E-21 176.4 19.9 281 402-683 231-598 (717)
13 KOG2122 Beta-catenin-binding p 99.7 4.1E-16 8.9E-21 181.1 18.0 261 421-682 314-603 (2195)
14 smart00504 Ubox Modified RING 99.7 2.8E-17 6E-22 133.1 5.5 63 100-163 1-63 (63)
15 KOG4199 Uncharacterized conser 99.6 5E-14 1.1E-18 144.5 25.0 275 405-680 146-444 (461)
16 KOG4199 Uncharacterized conser 99.6 1.1E-12 2.4E-17 134.7 27.2 266 413-682 116-405 (461)
17 KOG1048 Neural adherens juncti 99.5 4.2E-13 9.1E-18 151.7 21.1 279 403-683 274-687 (717)
18 PF04826 Arm_2: Armadillo-like 99.5 8.8E-12 1.9E-16 128.5 23.0 191 403-598 11-206 (254)
19 KOG4642 Chaperone-dependent E3 99.4 1.5E-12 3.2E-17 128.6 13.6 159 4-171 96-282 (284)
20 KOG2122 Beta-catenin-binding p 99.4 1.7E-12 3.8E-17 151.6 15.8 223 419-641 366-604 (2195)
21 PF04826 Arm_2: Armadillo-like 99.4 1.4E-11 3.1E-16 127.0 21.0 194 443-640 9-207 (254)
22 PF10508 Proteasom_PSMB: Prote 99.4 1.3E-10 2.9E-15 132.0 28.7 277 403-680 76-366 (503)
23 COG5113 UFD2 Ubiquitin fusion 99.3 7.6E-12 1.6E-16 136.5 11.4 131 7-168 788-922 (929)
24 KOG2042 Ubiquitin fusion degra 99.2 1.7E-11 3.8E-16 142.2 9.9 130 8-168 805-938 (943)
25 KOG1222 Kinesin associated pro 99.2 8.6E-10 1.9E-14 117.9 20.9 275 403-681 303-664 (791)
26 PF10508 Proteasom_PSMB: Prote 99.2 4.6E-09 1E-13 119.4 24.3 273 409-685 43-324 (503)
27 KOG4500 Rho/Rac GTPase guanine 99.1 2.7E-09 5.8E-14 113.1 19.8 279 403-682 86-433 (604)
28 PF15227 zf-C3HC4_4: zinc fing 99.1 3E-11 6.4E-16 89.3 3.1 39 103-141 1-42 (42)
29 cd00020 ARM Armadillo/beta-cat 99.1 1.4E-09 3E-14 98.2 14.1 116 442-557 3-120 (120)
30 PLN03208 E3 ubiquitin-protein 99.1 3.7E-11 8.1E-16 116.4 3.7 61 94-154 12-87 (193)
31 cd00256 VATPase_H VATPase_H, r 99.1 3.1E-08 6.8E-13 108.8 25.3 273 406-678 103-423 (429)
32 cd00020 ARM Armadillo/beta-cat 99.1 3.5E-09 7.5E-14 95.6 15.0 116 564-679 2-119 (120)
33 KOG0168 Putative ubiquitin fus 99.1 3.4E-08 7.4E-13 112.0 25.3 257 403-663 166-438 (1051)
34 TIGR00599 rad18 DNA repair pro 99.0 2.1E-10 4.5E-15 124.0 6.4 69 97-166 23-91 (397)
35 PRK09687 putative lyase; Provi 99.0 2E-08 4.3E-13 105.6 20.6 222 404-676 54-278 (280)
36 PRK09687 putative lyase; Provi 98.9 5.8E-08 1.3E-12 102.2 20.1 223 404-677 23-247 (280)
37 KOG1222 Kinesin associated pro 98.9 1.3E-08 2.7E-13 109.2 14.7 198 459-658 276-474 (791)
38 KOG4500 Rho/Rac GTPase guanine 98.9 6.9E-08 1.5E-12 102.6 19.8 279 399-678 218-517 (604)
39 PF03224 V-ATPase_H_N: V-ATPas 98.9 5.6E-08 1.2E-12 104.1 18.3 230 447-676 56-310 (312)
40 PF03224 V-ATPase_H_N: V-ATPas 98.9 2.3E-07 5E-12 99.4 21.4 219 408-627 62-303 (312)
41 PF11789 zf-Nse: Zinc-finger o 98.8 1.6E-09 3.6E-14 85.3 2.4 44 99-142 10-55 (57)
42 PF13923 zf-C3HC4_2: Zinc fing 98.8 4.4E-09 9.5E-14 76.6 3.0 38 103-141 1-39 (39)
43 KOG0946 ER-Golgi vesicle-tethe 98.8 3.3E-06 7.1E-11 95.8 26.4 258 403-664 21-328 (970)
44 PRK13800 putative oxidoreducta 98.7 1.7E-06 3.6E-11 105.4 25.0 232 403-676 620-895 (897)
45 KOG2759 Vacuolar H+-ATPase V1 98.6 5.7E-06 1.2E-10 88.6 21.9 269 407-678 117-436 (442)
46 PF13445 zf-RING_UBOX: RING-ty 98.6 2E-08 4.3E-13 74.3 2.3 36 103-139 1-43 (43)
47 PRK13800 putative oxidoreducta 98.6 5.9E-06 1.3E-10 100.7 24.6 203 403-635 651-896 (897)
48 KOG4646 Uncharacterized conser 98.6 5.4E-07 1.2E-11 82.2 11.5 121 404-525 16-138 (173)
49 KOG0823 Predicted E3 ubiquitin 98.6 2.6E-08 5.7E-13 98.4 3.0 57 99-155 46-104 (230)
50 KOG2160 Armadillo/beta-catenin 98.6 4.7E-06 1E-10 88.0 19.9 182 499-680 95-283 (342)
51 KOG2160 Armadillo/beta-catenin 98.6 4.9E-06 1.1E-10 87.9 19.4 183 458-640 95-284 (342)
52 PF00097 zf-C3HC4: Zinc finger 98.5 6.5E-08 1.4E-12 71.1 3.3 39 103-141 1-41 (41)
53 PHA02929 N1R/p28-like protein; 98.5 1.6E-07 3.5E-12 95.2 7.0 49 97-146 171-227 (238)
54 PF14835 zf-RING_6: zf-RING of 98.5 3.2E-08 6.9E-13 78.2 1.2 58 100-160 7-65 (65)
55 KOG0287 Postreplication repair 98.5 4.8E-08 1E-12 100.2 2.8 65 99-164 22-86 (442)
56 PF01602 Adaptin_N: Adaptin N 98.5 9.8E-06 2.1E-10 92.8 21.1 253 404-680 79-333 (526)
57 PF13920 zf-C3HC4_3: Zinc fing 98.5 1.1E-07 2.5E-12 73.1 3.4 47 99-146 1-48 (50)
58 KOG0320 Predicted E3 ubiquitin 98.5 7.3E-08 1.6E-12 91.2 2.4 51 101-152 132-184 (187)
59 KOG2973 Uncharacterized conser 98.4 8.3E-05 1.8E-09 76.9 24.4 271 404-680 3-315 (353)
60 KOG0168 Putative ubiquitin fus 98.4 5.8E-06 1.3E-10 94.4 17.5 213 402-619 209-436 (1051)
61 KOG2177 Predicted E3 ubiquitin 98.4 1.5E-07 3.2E-12 99.3 4.6 71 97-170 10-80 (386)
62 cd00256 VATPase_H VATPase_H, r 98.4 4.7E-05 1E-09 84.0 23.8 216 403-619 52-286 (429)
63 PF01602 Adaptin_N: Adaptin N 98.3 5.1E-05 1.1E-09 86.9 22.0 250 403-677 113-366 (526)
64 KOG3678 SARM protein (with ste 98.3 3.1E-05 6.6E-10 83.4 18.2 261 402-680 178-452 (832)
65 COG5432 RAD18 RING-finger-cont 98.3 3.9E-07 8.4E-12 91.9 3.2 65 100-165 25-89 (391)
66 PF13639 zf-RING_2: Ring finge 98.3 3.7E-07 8E-12 68.2 1.9 40 102-142 2-44 (44)
67 cd00162 RING RING-finger (Real 98.3 8.8E-07 1.9E-11 65.6 3.8 44 102-145 1-45 (45)
68 KOG4646 Uncharacterized conser 98.2 6.3E-06 1.4E-10 75.4 9.2 153 526-678 14-168 (173)
69 KOG0317 Predicted E3 ubiquitin 98.2 9.3E-07 2E-11 90.0 3.6 55 96-151 234-289 (293)
70 smart00184 RING Ring finger. E 98.1 2.1E-06 4.5E-11 61.3 3.5 39 103-141 1-39 (39)
71 KOG0289 mRNA splicing factor [ 98.1 8.7E-07 1.9E-11 94.2 1.1 77 101-191 1-78 (506)
72 KOG1293 Proteins containing ar 98.1 0.00013 2.9E-09 81.9 18.0 274 408-681 236-534 (678)
73 KOG2973 Uncharacterized conser 98.1 0.00011 2.3E-09 76.1 15.7 234 449-686 6-279 (353)
74 TIGR00570 cdk7 CDK-activating 98.1 5E-06 1.1E-10 86.8 6.0 65 99-163 2-75 (309)
75 PHA02926 zinc finger-like prot 98.0 3.6E-06 7.8E-11 82.7 3.6 50 97-146 167-230 (242)
76 KOG2171 Karyopherin (importin) 98.0 0.00037 8E-09 83.0 20.6 233 404-639 348-595 (1075)
77 PTZ00429 beta-adaptin; Provisi 98.0 0.00089 1.9E-08 79.2 23.8 258 402-679 66-325 (746)
78 KOG0946 ER-Golgi vesicle-tethe 98.0 0.00092 2E-08 76.5 22.3 247 404-650 61-358 (970)
79 COG5222 Uncharacterized conser 98.0 8.3E-06 1.8E-10 82.7 4.8 67 101-167 275-343 (427)
80 KOG2759 Vacuolar H+-ATPase V1 97.9 0.00082 1.8E-08 72.4 19.9 233 405-639 157-439 (442)
81 KOG1293 Proteins containing ar 97.9 0.00098 2.1E-08 75.2 21.1 248 415-662 388-654 (678)
82 TIGR02270 conserved hypothetic 97.9 0.00098 2.1E-08 73.8 21.0 58 610-682 241-298 (410)
83 KOG2164 Predicted E3 ubiquitin 97.9 7.3E-06 1.6E-10 89.6 3.2 72 97-168 183-262 (513)
84 KOG0212 Uncharacterized conser 97.9 0.00033 7.2E-09 77.5 15.6 234 400-639 204-445 (675)
85 KOG0311 Predicted E3 ubiquitin 97.9 2.9E-06 6.4E-11 88.3 -0.1 66 97-162 40-107 (381)
86 PF14634 zf-RING_5: zinc-RING 97.9 1.2E-05 2.6E-10 60.1 3.1 41 102-143 1-44 (44)
87 KOG2023 Nuclear transport rece 97.8 0.00038 8.2E-09 78.2 15.9 268 400-681 124-464 (885)
88 KOG2171 Karyopherin (importin) 97.8 0.0024 5.1E-08 76.3 23.1 273 401-680 115-418 (1075)
89 PF05536 Neurochondrin: Neuroc 97.8 0.0011 2.4E-08 76.2 20.2 234 403-637 4-260 (543)
90 PTZ00429 beta-adaptin; Provisi 97.8 0.0082 1.8E-07 71.2 27.7 248 403-675 31-280 (746)
91 PF05536 Neurochondrin: Neuroc 97.8 0.00098 2.1E-08 76.6 19.6 231 447-678 6-259 (543)
92 KOG3678 SARM protein (with ste 97.8 0.00036 7.9E-09 75.4 14.4 170 481-653 174-350 (832)
93 KOG0978 E3 ubiquitin ligase in 97.8 1.8E-05 4E-10 90.5 5.0 54 100-153 643-696 (698)
94 KOG2734 Uncharacterized conser 97.8 0.0046 1E-07 66.9 22.5 236 424-661 104-371 (536)
95 COG5574 PEX10 RING-finger-cont 97.8 1E-05 2.3E-10 81.5 2.3 51 99-149 214-265 (271)
96 PF14664 RICTOR_N: Rapamycin-i 97.7 0.003 6.6E-08 69.2 20.1 245 431-678 10-267 (371)
97 PF14664 RICTOR_N: Rapamycin-i 97.7 0.0099 2.2E-07 65.2 23.8 272 403-678 24-362 (371)
98 KOG2734 Uncharacterized conser 97.7 0.012 2.6E-07 63.8 23.0 237 404-640 125-402 (536)
99 KOG4413 26S proteasome regulat 97.6 0.0082 1.8E-07 62.8 20.1 247 404-651 82-345 (524)
100 PF12678 zf-rbx1: RING-H2 zinc 97.6 5.6E-05 1.2E-09 63.0 3.6 44 97-142 17-73 (73)
101 KOG1517 Guanine nucleotide bin 97.6 0.0026 5.7E-08 74.8 18.2 201 443-643 509-737 (1387)
102 KOG4159 Predicted E3 ubiquitin 97.6 4.5E-05 9.7E-10 83.1 3.7 72 94-166 78-154 (398)
103 PF10165 Ric8: Guanine nucleot 97.6 0.0052 1.1E-07 69.1 20.1 261 424-685 1-342 (446)
104 COG5231 VMA13 Vacuolar H+-ATPa 97.6 0.0029 6.3E-08 65.9 16.0 228 453-680 156-428 (432)
105 KOG0297 TNF receptor-associate 97.5 5E-05 1.1E-09 83.6 3.6 67 96-163 17-85 (391)
106 PF00514 Arm: Armadillo/beta-c 97.5 0.00014 3E-09 53.3 4.7 40 435-474 1-40 (41)
107 KOG2660 Locus-specific chromos 97.5 5.4E-05 1.2E-09 78.8 2.7 66 97-163 12-82 (331)
108 COG1413 FOG: HEAT repeat [Ener 97.5 0.0096 2.1E-07 64.2 20.4 184 404-636 43-240 (335)
109 KOG2023 Nuclear transport rece 97.5 0.0034 7.3E-08 70.9 16.6 267 403-681 173-506 (885)
110 PF12348 CLASP_N: CLASP N term 97.4 0.00098 2.1E-08 67.8 10.6 182 413-598 16-207 (228)
111 PF00514 Arm: Armadillo/beta-c 97.4 0.00037 8E-09 51.0 5.2 41 598-638 1-41 (41)
112 PF10165 Ric8: Guanine nucleot 97.4 0.028 6E-07 63.4 22.6 239 403-641 21-340 (446)
113 KOG1789 Endocytosis protein RM 97.3 0.048 1E-06 64.5 23.3 110 405-516 1772-1883(2235)
114 PF12348 CLASP_N: CLASP N term 97.3 0.0024 5.3E-08 64.9 12.1 181 497-681 17-207 (228)
115 TIGR02270 conserved hypothetic 97.3 0.022 4.7E-07 63.3 19.7 151 404-596 54-206 (410)
116 COG5369 Uncharacterized conser 97.3 0.0013 2.9E-08 72.4 9.8 182 479-660 423-617 (743)
117 COG1413 FOG: HEAT repeat [Ener 97.2 0.018 3.9E-07 62.2 18.3 160 446-640 43-211 (335)
118 COG5369 Uncharacterized conser 97.2 0.0026 5.6E-08 70.2 11.0 183 423-605 408-602 (743)
119 KOG0824 Predicted E3 ubiquitin 97.1 0.00022 4.8E-09 73.2 2.5 47 102-148 9-55 (324)
120 PF13646 HEAT_2: HEAT repeats; 97.1 0.0027 5.9E-08 54.1 8.6 86 448-553 1-88 (88)
121 KOG1242 Protein containing ada 97.1 0.048 1E-06 61.8 20.1 268 403-680 133-445 (569)
122 COG5240 SEC21 Vesicle coat com 97.1 0.048 1E-06 61.0 19.5 265 404-682 264-557 (898)
123 KOG0212 Uncharacterized conser 97.1 0.017 3.8E-07 64.3 16.2 236 446-684 167-410 (675)
124 PF13646 HEAT_2: HEAT repeats; 97.0 0.0052 1.1E-07 52.3 9.2 85 489-593 1-88 (88)
125 KOG1002 Nucleotide excision re 96.9 0.00066 1.4E-08 74.1 3.7 51 99-149 535-589 (791)
126 KOG1813 Predicted E3 ubiquitin 96.9 0.00055 1.2E-08 70.2 2.4 58 101-160 242-299 (313)
127 KOG0802 E3 ubiquitin ligase [P 96.8 0.00052 1.1E-08 79.1 1.7 47 98-145 289-340 (543)
128 KOG4413 26S proteasome regulat 96.8 0.082 1.8E-06 55.6 17.2 236 448-685 84-338 (524)
129 KOG1059 Vesicle coat complex A 96.7 0.13 2.8E-06 59.1 19.7 219 401-641 178-404 (877)
130 KOG1241 Karyopherin (importin) 96.7 0.13 2.9E-06 59.4 19.8 274 403-680 128-435 (859)
131 KOG1517 Guanine nucleotide bin 96.7 0.068 1.5E-06 63.5 17.6 198 481-678 506-730 (1387)
132 PF04641 Rtf2: Rtf2 RING-finge 96.6 0.0013 2.9E-08 68.5 3.5 54 97-152 110-167 (260)
133 KOG1242 Protein containing ada 96.6 0.085 1.8E-06 59.8 17.6 242 404-662 216-464 (569)
134 PF12861 zf-Apc11: Anaphase-pr 96.5 0.0024 5.1E-08 54.2 3.2 47 101-147 33-83 (85)
135 COG5243 HRD1 HRD ubiquitin lig 96.5 0.0018 3.9E-08 68.1 3.0 47 98-145 285-344 (491)
136 smart00185 ARM Armadillo/beta- 96.5 0.0062 1.3E-07 43.9 5.1 38 437-474 3-40 (41)
137 KOG0213 Splicing factor 3b, su 96.5 0.24 5.1E-06 57.2 19.6 153 403-557 798-954 (1172)
138 KOG1789 Endocytosis protein RM 96.4 0.51 1.1E-05 56.4 22.4 136 421-557 1742-1883(2235)
139 smart00185 ARM Armadillo/beta- 96.4 0.0069 1.5E-07 43.6 5.0 40 518-557 2-41 (41)
140 PF04063 DUF383: Domain of unk 96.4 0.022 4.8E-07 56.5 10.2 124 539-662 6-158 (192)
141 KOG4628 Predicted E3 ubiquitin 96.4 0.0022 4.7E-08 68.5 3.1 46 101-146 230-278 (348)
142 KOG1824 TATA-binding protein-i 96.4 0.1 2.2E-06 61.5 16.5 263 408-680 9-286 (1233)
143 KOG2979 Protein involved in DN 96.4 0.0031 6.8E-08 63.8 3.9 62 100-161 176-243 (262)
144 KOG1061 Vesicle coat complex A 96.3 0.068 1.5E-06 61.9 14.6 170 403-579 120-290 (734)
145 PF11841 DUF3361: Domain of un 96.3 0.071 1.5E-06 51.0 12.4 120 522-641 5-134 (160)
146 KOG2259 Uncharacterized conser 96.3 0.083 1.8E-06 60.1 14.6 181 448-639 200-440 (823)
147 KOG3039 Uncharacterized conser 96.2 0.0029 6.4E-08 63.1 2.8 54 99-153 220-277 (303)
148 KOG3036 Protein involved in ce 96.2 0.36 7.9E-06 49.1 17.4 178 461-638 94-291 (293)
149 KOG2259 Uncharacterized conser 96.2 0.066 1.4E-06 60.9 13.2 215 405-634 199-471 (823)
150 COG5152 Uncharacterized conser 96.2 0.002 4.3E-08 62.2 1.2 45 101-146 197-241 (259)
151 PF09759 Atx10homo_assoc: Spin 96.1 0.029 6.3E-07 49.7 8.2 66 585-650 3-71 (102)
152 PF04078 Rcd1: Cell differenti 96.1 0.39 8.5E-06 49.6 17.3 190 417-607 8-228 (262)
153 COG5181 HSH155 U2 snRNP splice 96.1 0.26 5.7E-06 55.7 17.0 153 403-557 603-759 (975)
154 KOG1824 TATA-binding protein-i 96.0 0.2 4.4E-06 59.1 16.7 233 402-642 45-290 (1233)
155 KOG1241 Karyopherin (importin) 96.0 0.32 7E-06 56.4 17.9 264 404-680 172-477 (859)
156 KOG3039 Uncharacterized conser 96.0 0.0045 9.7E-08 61.9 2.6 37 97-133 40-76 (303)
157 COG5231 VMA13 Vacuolar H+-ATPa 95.9 0.41 8.9E-06 50.4 16.6 220 417-638 162-428 (432)
158 KOG4367 Predicted Zn-finger pr 95.8 0.0034 7.3E-08 67.1 1.0 34 98-131 2-35 (699)
159 COG5096 Vesicle coat complex, 95.8 0.68 1.5E-05 54.7 19.8 144 402-558 53-196 (757)
160 PF13513 HEAT_EZ: HEAT-like re 95.8 0.027 5.8E-07 43.8 5.9 55 501-555 1-55 (55)
161 KOG0213 Splicing factor 3b, su 95.8 0.27 5.8E-06 56.7 15.7 150 529-680 800-954 (1172)
162 KOG2879 Predicted E3 ubiquitin 95.8 0.0069 1.5E-07 61.7 3.1 49 98-146 237-287 (298)
163 KOG1062 Vesicle coat complex A 95.7 1.1 2.4E-05 52.5 20.6 106 404-516 142-263 (866)
164 KOG1077 Vesicle coat complex A 95.7 2.4 5.1E-05 49.2 22.8 241 424-679 309-586 (938)
165 KOG0826 Predicted E3 ubiquitin 95.7 0.0039 8.4E-08 64.9 0.8 52 97-149 297-349 (357)
166 KOG1061 Vesicle coat complex A 95.6 0.12 2.6E-06 59.9 12.7 243 402-664 47-293 (734)
167 KOG1248 Uncharacterized conser 95.6 0.44 9.5E-06 57.9 17.6 216 456-680 664-898 (1176)
168 KOG1059 Vesicle coat complex A 95.6 0.46 1E-05 54.8 17.0 130 411-557 116-248 (877)
169 KOG1062 Vesicle coat complex A 95.6 0.8 1.7E-05 53.6 19.0 253 405-673 108-407 (866)
170 PF11841 DUF3361: Domain of un 95.5 0.16 3.5E-06 48.7 11.2 118 562-679 4-130 (160)
171 COG5540 RING-finger-containing 95.5 0.011 2.4E-07 60.9 3.2 47 101-147 324-373 (374)
172 PF05004 IFRD: Interferon-rela 95.4 1.1 2.3E-05 48.1 18.5 177 460-639 57-258 (309)
173 COG5215 KAP95 Karyopherin (imp 95.4 1.8 4E-05 48.9 20.2 273 403-681 92-438 (858)
174 KOG3036 Protein involved in ce 95.4 1 2.2E-05 46.0 16.7 146 420-566 95-256 (293)
175 COG5096 Vesicle coat complex, 95.3 0.66 1.4E-05 54.8 17.6 167 413-598 28-196 (757)
176 PF13513 HEAT_EZ: HEAT-like re 95.3 0.031 6.7E-07 43.4 4.8 55 460-514 1-55 (55)
177 KOG4151 Myosin assembly protei 95.3 0.91 2E-05 53.1 18.4 242 436-682 494-743 (748)
178 PF13764 E3_UbLigase_R4: E3 ub 95.3 2.1 4.6E-05 51.3 21.9 238 442-681 113-407 (802)
179 KOG1077 Vesicle coat complex A 94.9 1.4 3E-05 50.9 17.9 105 403-516 110-216 (938)
180 KOG4692 Predicted E3 ubiquitin 94.9 0.034 7.4E-07 58.4 4.9 53 94-147 414-468 (489)
181 KOG0804 Cytoplasmic Zn-finger 94.9 0.009 2E-07 64.7 0.7 43 101-146 176-222 (493)
182 KOG2817 Predicted E3 ubiquitin 94.9 0.018 3.9E-07 61.8 2.9 43 101-143 335-382 (394)
183 PF11698 V-ATPase_H_C: V-ATPas 94.9 0.086 1.9E-06 48.0 6.8 72 403-474 42-114 (119)
184 PF09759 Atx10homo_assoc: Spin 94.7 0.14 3.1E-06 45.4 7.7 64 544-607 2-70 (102)
185 KOG1078 Vesicle coat complex C 94.7 1.3 2.9E-05 51.7 17.1 257 404-680 245-532 (865)
186 PF05004 IFRD: Interferon-rela 94.5 1.7 3.8E-05 46.5 16.9 182 497-680 53-257 (309)
187 KOG3113 Uncharacterized conser 94.4 0.028 6.1E-07 56.6 2.8 50 99-151 110-163 (293)
188 PF04063 DUF383: Domain of unk 94.4 0.22 4.7E-06 49.6 9.0 118 461-578 10-156 (192)
189 PF08569 Mo25: Mo25-like; Int 94.3 1.4 2.9E-05 47.8 15.7 197 403-601 75-287 (335)
190 KOG1060 Vesicle coat complex A 94.3 3.8 8.1E-05 48.2 19.6 207 407-639 38-247 (968)
191 KOG1645 RING-finger-containing 94.2 0.024 5.1E-07 60.8 1.9 62 100-161 4-71 (463)
192 COG5215 KAP95 Karyopherin (imp 94.2 4.1 8.9E-05 46.2 19.0 226 452-685 100-362 (858)
193 PF12755 Vac14_Fab1_bd: Vacuol 94.1 0.31 6.8E-06 42.9 8.6 68 609-679 27-96 (97)
194 COG5181 HSH155 U2 snRNP splice 94.1 0.8 1.7E-05 52.0 13.5 233 448-684 606-874 (975)
195 PF06025 DUF913: Domain of Unk 94.0 5.8 0.00013 43.8 20.0 96 483-578 101-205 (379)
196 PF07814 WAPL: Wings apart-lik 93.7 1.8 3.9E-05 47.5 15.6 246 402-655 19-316 (361)
197 PF02891 zf-MIZ: MIZ/SP-RING z 93.7 0.068 1.5E-06 41.1 3.1 45 100-144 2-50 (50)
198 PF12755 Vac14_Fab1_bd: Vacuol 93.7 0.46 1E-05 41.8 8.8 68 528-596 27-95 (97)
199 KOG4151 Myosin assembly protei 93.7 0.57 1.2E-05 54.8 11.9 193 476-673 493-692 (748)
200 KOG1240 Protein kinase contain 93.6 2.4 5.1E-05 51.9 17.0 265 405-680 426-725 (1431)
201 PF12717 Cnd1: non-SMC mitotic 93.6 3.9 8.4E-05 40.0 16.2 93 417-517 1-93 (178)
202 PF14447 Prok-RING_4: Prokaryo 93.5 0.037 8.1E-07 42.9 1.4 47 100-149 7-53 (55)
203 KOG1785 Tyrosine kinase negati 93.5 0.032 6.8E-07 59.5 1.3 46 102-147 371-417 (563)
204 PF14668 RICTOR_V: Rapamycin-i 93.5 0.35 7.5E-06 40.3 7.1 65 545-609 4-70 (73)
205 PF04078 Rcd1: Cell differenti 93.4 0.93 2E-05 46.9 11.7 145 422-567 68-228 (262)
206 COG5109 Uncharacterized conser 93.4 0.68 1.5E-05 48.3 10.5 42 101-142 337-383 (396)
207 PF12719 Cnd3: Nuclear condens 93.4 7 0.00015 41.6 19.0 167 404-578 26-206 (298)
208 PF08569 Mo25: Mo25-like; Int 93.3 14 0.0003 40.1 21.5 197 442-640 72-285 (335)
209 PF08045 CDC14: Cell division 93.3 0.85 1.8E-05 47.3 11.3 95 584-678 107-205 (257)
210 KOG1788 Uncharacterized conser 93.1 1.7 3.6E-05 52.1 14.2 253 426-684 664-986 (2799)
211 KOG0567 HEAT repeat-containing 93.0 9.1 0.0002 39.7 17.9 60 610-680 219-280 (289)
212 KOG2999 Regulator of Rac1, req 93.0 1.6 3.4E-05 49.2 13.3 153 488-640 84-244 (713)
213 PF12719 Cnd3: Nuclear condens 92.9 2.9 6.2E-05 44.5 15.2 168 446-620 26-208 (298)
214 KOG1248 Uncharacterized conser 92.9 4.9 0.00011 49.2 18.1 218 415-640 665-900 (1176)
215 KOG2274 Predicted importin 9 [ 92.8 2.1 4.6E-05 50.8 14.6 217 457-680 461-689 (1005)
216 KOG4172 Predicted E3 ubiquitin 92.6 0.037 8.1E-07 42.4 0.2 45 101-145 8-53 (62)
217 PF06025 DUF913: Domain of Unk 92.3 3.9 8.5E-05 45.1 15.6 96 405-500 110-209 (379)
218 PF11698 V-ATPase_H_C: V-ATPas 92.2 0.3 6.6E-06 44.5 5.5 70 610-679 44-114 (119)
219 KOG0883 Cyclophilin type, U bo 91.9 0.11 2.4E-06 55.4 2.7 53 100-153 40-92 (518)
220 PF06371 Drf_GBD: Diaphanous G 91.9 2.2 4.9E-05 41.6 12.0 76 562-637 100-186 (187)
221 KOG1060 Vesicle coat complex A 91.6 26 0.00057 41.5 21.2 249 411-679 150-457 (968)
222 KOG1734 Predicted RING-contain 91.6 0.042 9.1E-07 55.8 -0.7 55 99-153 223-288 (328)
223 KOG0825 PHD Zn-finger protein 91.6 0.047 1E-06 62.7 -0.4 47 100-147 123-172 (1134)
224 KOG1240 Protein kinase contain 91.5 5.7 0.00012 48.8 16.3 228 401-639 459-726 (1431)
225 KOG1001 Helicase-like transcri 91.4 0.045 9.8E-07 64.2 -0.9 48 101-149 455-503 (674)
226 PF08324 PUL: PUL domain; Int 91.3 3.2 7E-05 43.2 13.1 183 448-630 65-266 (268)
227 KOG1058 Vesicle coat complex C 91.2 9.1 0.0002 44.9 17.0 133 491-643 321-468 (948)
228 smart00744 RINGv The RING-vari 91.1 0.25 5.4E-06 37.7 3.3 41 102-142 1-49 (49)
229 KOG4653 Uncharacterized conser 91.1 6.6 0.00014 46.7 16.0 215 452-675 733-959 (982)
230 PF14570 zf-RING_4: RING/Ubox 91.0 0.17 3.8E-06 38.3 2.3 43 103-145 1-47 (48)
231 KOG0827 Predicted E3 ubiquitin 91.0 0.13 2.9E-06 54.9 2.2 50 98-149 2-59 (465)
232 KOG3800 Predicted E3 ubiquitin 90.7 0.18 3.8E-06 52.2 2.8 47 102-148 2-53 (300)
233 PF13764 E3_UbLigase_R4: E3 ub 90.7 36 0.00079 41.2 22.2 230 404-638 117-406 (802)
234 KOG2611 Neurochondrin/leucine- 90.6 6.4 0.00014 43.9 14.5 146 491-636 15-180 (698)
235 KOG3665 ZYG-1-like serine/thre 90.6 19 0.00042 43.0 20.0 170 510-679 494-696 (699)
236 KOG0915 Uncharacterized conser 90.6 3.2 6.9E-05 52.0 13.4 233 404-641 818-1071(1702)
237 KOG1039 Predicted E3 ubiquitin 90.3 0.17 3.7E-06 54.5 2.4 49 98-146 159-221 (344)
238 PF08045 CDC14: Cell division 90.1 2.8 6.1E-05 43.5 11.0 94 421-514 108-205 (257)
239 KOG0828 Predicted E3 ubiquitin 90.1 0.16 3.5E-06 55.7 1.9 51 97-147 568-635 (636)
240 KOG2999 Regulator of Rac1, req 90.1 4.4 9.5E-05 45.8 12.9 152 529-680 84-242 (713)
241 PF11701 UNC45-central: Myosin 89.8 0.67 1.5E-05 44.6 5.8 143 489-635 5-156 (157)
242 KOG1832 HIV-1 Vpr-binding prot 89.7 6.4 0.00014 46.8 14.2 121 562-682 594-775 (1516)
243 PF06371 Drf_GBD: Diaphanous G 89.5 2.2 4.7E-05 41.7 9.4 110 404-515 66-186 (187)
244 PF11793 FANCL_C: FANCL C-term 89.3 0.12 2.5E-06 42.7 0.1 48 100-147 2-67 (70)
245 KOG1820 Microtubule-associated 89.3 8.6 0.00019 46.4 15.5 187 404-597 253-443 (815)
246 PF12717 Cnd1: non-SMC mitotic 89.2 12 0.00027 36.4 14.5 92 500-598 1-93 (178)
247 PF14500 MMS19_N: Dos2-interac 88.4 29 0.00062 36.3 17.2 216 408-640 3-239 (262)
248 KOG3161 Predicted E3 ubiquitin 88.4 0.25 5.5E-06 55.9 2.0 60 99-161 10-77 (861)
249 PF08324 PUL: PUL domain; Int 88.2 2.9 6.2E-05 43.6 9.7 169 506-674 82-268 (268)
250 KOG1943 Beta-tubulin folding c 88.2 36 0.00078 41.8 19.3 244 402-666 339-597 (1133)
251 KOG2025 Chromosome condensatio 88.0 17 0.00036 42.6 15.9 105 446-554 85-190 (892)
252 KOG2274 Predicted importin 9 [ 87.7 31 0.00068 41.5 18.2 221 415-642 461-693 (1005)
253 KOG2114 Vacuolar assembly/sort 87.7 2.5 5.4E-05 49.9 9.4 39 101-143 841-880 (933)
254 KOG4653 Uncharacterized conser 87.5 23 0.00051 42.3 17.0 186 403-597 726-918 (982)
255 KOG0567 HEAT repeat-containing 87.5 32 0.0007 35.8 16.2 195 403-638 66-280 (289)
256 COG5175 MOT2 Transcriptional r 87.2 0.44 9.4E-06 50.1 2.7 50 99-149 14-67 (480)
257 COG5627 MMS21 DNA repair prote 87.1 0.48 1E-05 47.4 2.9 63 101-163 190-258 (275)
258 PF05918 API5: Apoptosis inhib 86.7 44 0.00096 38.7 18.6 132 404-553 23-158 (556)
259 KOG1991 Nuclear transport rece 86.1 58 0.0013 39.7 19.4 216 421-641 435-674 (1010)
260 KOG2611 Neurochondrin/leucine- 86.0 58 0.0013 36.7 18.0 186 451-638 16-225 (698)
261 KOG2032 Uncharacterized conser 85.8 68 0.0015 36.3 19.8 261 402-680 256-531 (533)
262 PF12460 MMS19_C: RNAPII trans 85.4 22 0.00047 39.8 15.4 187 403-599 188-396 (415)
263 KOG0301 Phospholipase A2-activ 85.1 23 0.0005 41.2 15.0 160 454-620 552-727 (745)
264 COG5219 Uncharacterized conser 85.1 0.41 9E-06 56.4 1.5 46 101-146 1470-1523(1525)
265 PF05918 API5: Apoptosis inhib 85.1 15 0.00033 42.3 13.9 97 403-512 58-158 (556)
266 KOG0301 Phospholipase A2-activ 84.9 20 0.00043 41.7 14.4 165 409-578 549-725 (745)
267 KOG1493 Anaphase-promoting com 84.9 0.22 4.7E-06 41.1 -0.6 49 98-146 29-81 (84)
268 COG5194 APC11 Component of SCF 84.8 0.69 1.5E-05 38.6 2.2 44 102-146 33-81 (88)
269 KOG0915 Uncharacterized conser 83.8 89 0.0019 40.0 20.1 213 404-620 956-1183(1702)
270 PF02985 HEAT: HEAT repeat; I 83.8 2.3 5E-05 28.8 4.2 29 611-639 2-30 (31)
271 PF02985 HEAT: HEAT repeat; I 83.6 1.9 4.1E-05 29.3 3.7 29 447-475 1-29 (31)
272 KOG0211 Protein phosphatase 2A 83.4 19 0.00042 43.2 14.2 263 405-677 356-622 (759)
273 PF14668 RICTOR_V: Rapamycin-i 83.3 6.2 0.00013 32.9 7.3 66 585-651 4-70 (73)
274 KOG4464 Signaling protein RIC- 83.2 37 0.0008 37.4 14.8 82 417-498 110-198 (532)
275 COG5209 RCD1 Uncharacterized p 83.0 11 0.00024 38.1 10.2 144 421-565 117-276 (315)
276 PF12460 MMS19_C: RNAPII trans 82.6 40 0.00086 37.7 15.9 128 529-659 272-414 (415)
277 KOG2062 26S proteasome regulat 82.6 26 0.00056 41.3 14.2 132 446-597 519-653 (929)
278 KOG2062 26S proteasome regulat 82.4 65 0.0014 38.2 17.2 151 494-666 526-680 (929)
279 KOG4535 HEAT and armadillo rep 82.2 2.2 4.7E-05 47.4 5.4 176 462-638 407-603 (728)
280 KOG4535 HEAT and armadillo rep 82.2 2 4.4E-05 47.6 5.2 173 503-677 407-600 (728)
281 KOG4265 Predicted E3 ubiquitin 82.2 0.87 1.9E-05 48.7 2.3 47 100-147 290-337 (349)
282 COG5209 RCD1 Uncharacterized p 82.2 11 0.00025 38.1 9.9 145 462-606 116-277 (315)
283 COG5240 SEC21 Vesicle coat com 81.5 99 0.0022 35.7 17.8 106 405-517 224-333 (898)
284 KOG0396 Uncharacterized conser 81.3 0.68 1.5E-05 49.5 1.2 49 100-148 330-381 (389)
285 PF11707 Npa1: Ribosome 60S bi 81.2 60 0.0013 35.1 16.2 157 404-560 56-240 (330)
286 PF06416 DUF1076: Protein of u 81.1 1 2.3E-05 40.0 2.1 58 93-151 32-96 (113)
287 PF12031 DUF3518: Domain of un 81.1 3.2 6.9E-05 42.4 5.8 81 542-622 138-229 (257)
288 PF04641 Rtf2: Rtf2 RING-finge 80.9 1.7 3.7E-05 45.4 4.0 37 99-135 33-70 (260)
289 KOG4185 Predicted E3 ubiquitin 80.8 1.3 2.9E-05 47.0 3.2 52 112-163 21-77 (296)
290 KOG3665 ZYG-1-like serine/thre 80.6 28 0.00062 41.6 14.4 191 427-634 494-693 (699)
291 KOG0414 Chromosome condensatio 80.3 16 0.00034 45.1 11.9 140 404-557 919-1064(1251)
292 PF11707 Npa1: Ribosome 60S bi 79.8 95 0.0021 33.5 20.0 153 448-600 58-240 (330)
293 PF07814 WAPL: Wings apart-lik 79.6 1E+02 0.0022 33.8 17.7 226 448-680 23-296 (361)
294 KOG1571 Predicted E3 ubiquitin 79.4 0.9 2E-05 48.6 1.3 49 94-146 299-347 (355)
295 KOG1566 Conserved protein Mo25 78.6 96 0.0021 33.2 15.7 198 403-600 78-289 (342)
296 KOG0211 Protein phosphatase 2A 78.3 46 0.00099 40.1 15.0 157 414-578 247-407 (759)
297 cd03561 VHS VHS domain family; 78.0 13 0.00029 34.5 8.6 72 403-474 36-111 (133)
298 cd03569 VHS_Hrs_Vps27p VHS dom 77.9 11 0.00023 35.7 8.0 72 403-474 40-113 (142)
299 PF11701 UNC45-central: Myosin 77.6 16 0.00034 35.0 9.3 140 530-675 5-154 (157)
300 KOG1243 Protein kinase [Genera 77.5 39 0.00084 39.7 13.6 252 407-675 257-510 (690)
301 PF12530 DUF3730: Protein of u 76.6 94 0.002 31.8 18.6 131 412-556 9-150 (234)
302 PF12031 DUF3518: Domain of un 76.6 8.2 0.00018 39.6 7.1 86 584-669 140-234 (257)
303 KOG2956 CLIP-associating prote 76.4 1.2E+02 0.0026 34.2 16.3 185 403-596 285-476 (516)
304 KOG2137 Protein kinase [Signal 76.1 19 0.00042 42.2 10.8 134 486-627 388-526 (700)
305 PRK14707 hypothetical protein; 76.0 2.9E+02 0.0063 37.1 21.5 237 405-643 374-618 (2710)
306 PF10367 Vps39_2: Vacuolar sor 76.0 4.4 9.6E-05 35.7 4.6 36 93-128 71-108 (109)
307 KOG2930 SCF ubiquitin ligase, 75.9 2 4.2E-05 37.7 2.1 27 117-144 80-106 (114)
308 KOG2933 Uncharacterized conser 75.8 15 0.00034 38.9 9.1 143 402-555 86-232 (334)
309 KOG4275 Predicted E3 ubiquitin 75.7 0.91 2E-05 47.0 0.1 40 99-145 299-341 (350)
310 KOG2933 Uncharacterized conser 75.7 18 0.00038 38.5 9.4 135 530-676 90-230 (334)
311 KOG4362 Transcriptional regula 75.7 1.2 2.5E-05 51.9 1.0 64 100-163 21-86 (684)
312 KOG2025 Chromosome condensatio 74.5 44 0.00094 39.4 12.8 107 487-600 85-193 (892)
313 PRK14707 hypothetical protein; 74.3 2.4E+02 0.0051 37.9 19.8 253 404-660 205-467 (2710)
314 cd03568 VHS_STAM VHS domain fa 74.2 16 0.00034 34.6 8.1 72 403-474 36-109 (144)
315 PF05883 Baculo_RING: Baculovi 74.1 2.9 6.4E-05 38.8 3.0 52 100-152 26-86 (134)
316 KOG1820 Microtubule-associated 74.0 46 0.00099 40.4 13.6 174 497-677 263-440 (815)
317 smart00638 LPD_N Lipoprotein N 73.6 79 0.0017 36.8 15.5 129 528-674 393-539 (574)
318 cd03561 VHS VHS domain family; 73.2 16 0.00035 33.9 7.8 74 610-683 38-115 (133)
319 cd03567 VHS_GGA VHS domain fam 73.2 19 0.0004 34.0 8.2 72 403-474 37-115 (139)
320 KOG1058 Vesicle coat complex C 73.1 1E+02 0.0022 36.7 15.3 135 407-557 23-163 (948)
321 PF10363 DUF2435: Protein of u 72.8 11 0.00025 32.7 6.2 70 404-475 3-72 (92)
322 KOG1788 Uncharacterized conser 72.0 85 0.0019 38.7 14.5 80 560-639 899-983 (2799)
323 KOG0298 DEAD box-containing he 71.9 1.3 2.8E-05 54.4 0.2 43 99-142 1152-1195(1394)
324 cd03568 VHS_STAM VHS domain fa 71.6 13 0.00029 35.2 6.9 72 610-681 38-111 (144)
325 PF08167 RIX1: rRNA processing 70.7 40 0.00087 32.5 10.2 108 403-514 24-141 (165)
326 KOG0414 Chromosome condensatio 70.7 38 0.00082 42.0 11.7 137 529-679 920-1063(1251)
327 KOG1814 Predicted E3 ubiquitin 70.6 4.6 9.9E-05 44.0 3.8 59 99-161 183-251 (445)
328 PF14666 RICTOR_M: Rapamycin-i 70.4 1.2E+02 0.0026 31.0 14.0 129 541-679 77-224 (226)
329 KOG1967 DNA repair/transcripti 69.6 14 0.00031 44.3 7.9 145 446-591 867-1018(1030)
330 PF14225 MOR2-PAG1_C: Cell mor 69.4 84 0.0018 32.9 12.9 177 403-597 63-254 (262)
331 PF05605 zf-Di19: Drought indu 68.7 13 0.00027 28.9 5.1 33 99-143 1-39 (54)
332 PLN02189 cellulose synthase 68.7 3.3 7.1E-05 50.5 2.5 46 101-146 35-87 (1040)
333 smart00288 VHS Domain present 68.7 25 0.00054 32.7 8.0 72 403-474 36-110 (133)
334 cd03569 VHS_Hrs_Vps27p VHS dom 68.0 22 0.00048 33.5 7.6 73 610-682 42-116 (142)
335 PF14500 MMS19_N: Dos2-interac 67.4 1.6E+02 0.0036 30.7 16.9 216 450-680 3-237 (262)
336 PF08167 RIX1: rRNA processing 67.4 38 0.00082 32.7 9.3 108 447-557 26-143 (165)
337 COG1592 Rubrerythrin [Energy p 67.3 18 0.0004 35.0 6.9 26 100-145 134-159 (166)
338 PF01347 Vitellogenin_N: Lipop 67.3 42 0.0009 39.4 11.5 162 488-673 396-582 (618)
339 KOG2032 Uncharacterized conser 67.2 80 0.0017 35.7 12.5 160 445-605 253-423 (533)
340 PF08506 Cse1: Cse1; InterPro 67.1 2E+02 0.0044 31.6 17.4 144 526-675 208-370 (370)
341 PRK06266 transcription initiat 66.8 1.3E+02 0.0027 29.7 12.8 56 97-168 114-170 (178)
342 PLN02195 cellulose synthase A 66.5 5 0.00011 48.7 3.4 47 102-148 8-61 (977)
343 PF05290 Baculo_IE-1: Baculovi 66.2 16 0.00036 33.8 5.9 51 98-148 78-134 (140)
344 PF14726 RTTN_N: Rotatin, an a 66.1 57 0.0012 28.8 9.2 67 567-633 28-95 (98)
345 cd03567 VHS_GGA VHS domain fam 66.0 22 0.00048 33.5 7.0 71 610-680 39-116 (139)
346 KOG3002 Zn finger protein [Gen 64.9 6.4 0.00014 41.9 3.6 60 97-163 45-105 (299)
347 PF01726 LexA_DNA_bind: LexA D 64.8 19 0.00042 29.2 5.6 45 3-52 8-52 (65)
348 KOG1967 DNA repair/transcripti 64.4 18 0.00039 43.6 7.2 114 396-510 901-1018(1030)
349 PF12530 DUF3730: Protein of u 62.5 1.9E+02 0.0041 29.6 17.8 135 448-596 2-150 (234)
350 PRK12495 hypothetical protein; 62.5 17 0.00037 36.5 5.8 32 97-147 39-70 (226)
351 KOG2956 CLIP-associating prote 61.5 2.8E+02 0.0062 31.4 16.1 142 489-638 331-477 (516)
352 PLN02436 cellulose synthase A 61.1 5.5 0.00012 48.7 2.5 46 101-146 37-89 (1094)
353 COG5218 YCG1 Chromosome conden 60.9 32 0.00069 39.6 8.1 101 446-550 91-192 (885)
354 COG5116 RPN2 26S proteasome re 60.7 76 0.0016 36.5 10.9 97 487-597 551-650 (926)
355 KOG4739 Uncharacterized protei 60.7 3 6.6E-05 42.4 0.2 40 111-153 15-55 (233)
356 COG5116 RPN2 26S proteasome re 60.4 60 0.0013 37.3 10.0 99 526-638 549-650 (926)
357 KOG1243 Protein kinase [Genera 60.2 28 0.0006 40.8 7.7 181 404-594 330-512 (690)
358 COG5656 SXM1 Importin, protein 58.9 3.9E+02 0.0085 32.1 17.9 230 446-680 460-711 (970)
359 smart00288 VHS Domain present 58.7 46 0.00099 30.9 7.8 72 610-681 38-112 (133)
360 PF00790 VHS: VHS domain; Int 58.4 23 0.0005 33.2 5.8 72 610-681 43-119 (140)
361 KOG1943 Beta-tubulin folding c 58.3 3.1E+02 0.0067 34.2 16.0 217 446-681 341-574 (1133)
362 PF14726 RTTN_N: Rotatin, an a 58.3 51 0.0011 29.1 7.4 73 397-470 23-95 (98)
363 PF00790 VHS: VHS domain; Int 58.1 25 0.00054 32.9 6.0 72 403-474 41-117 (140)
364 KOG2034 Vacuolar sorting prote 58.1 19 0.00041 43.2 6.0 37 97-133 814-852 (911)
365 KOG1078 Vesicle coat complex C 58.1 3.3E+02 0.0071 32.8 15.7 64 611-679 247-310 (865)
366 cd03572 ENTH_epsin_related ENT 57.7 34 0.00074 31.5 6.5 72 610-681 39-120 (122)
367 KOG1020 Sister chromatid cohes 57.3 1.9E+02 0.0042 37.2 14.4 107 446-559 816-923 (1692)
368 COG2176 PolC DNA polymerase II 56.9 9.2 0.0002 47.1 3.4 43 94-148 908-952 (1444)
369 PLN02638 cellulose synthase A 56.6 7.1 0.00015 47.9 2.4 46 101-146 18-70 (1079)
370 PF10272 Tmpp129: Putative tra 56.2 7.8 0.00017 42.2 2.4 35 115-149 303-354 (358)
371 KOG2137 Protein kinase [Signal 56.1 1.4E+02 0.0031 35.3 12.5 129 527-664 388-521 (700)
372 PF01347 Vitellogenin_N: Lipop 55.6 2.2E+02 0.0047 33.4 14.7 128 448-592 433-584 (618)
373 KOG1940 Zn-finger protein [Gen 54.9 9.4 0.0002 40.0 2.7 43 100-143 158-204 (276)
374 KOG2038 CAATT-binding transcri 52.9 3.4E+02 0.0074 32.6 14.7 102 528-638 304-409 (988)
375 PF14353 CpXC: CpXC protein 52.8 11 0.00024 34.7 2.5 48 100-147 1-50 (128)
376 COG5218 YCG1 Chromosome conden 52.8 1.9E+02 0.0042 33.6 12.4 100 527-630 90-191 (885)
377 COG5220 TFB3 Cdk activating ki 52.5 4.4 9.5E-05 40.9 -0.2 46 100-145 10-63 (314)
378 PF11865 DUF3385: Domain of un 52.5 97 0.0021 29.8 9.1 144 404-555 10-155 (160)
379 COG1675 TFA1 Transcription ini 52.3 61 0.0013 31.8 7.6 54 97-166 110-164 (176)
380 PF10363 DUF2435: Protein of u 52.0 61 0.0013 28.2 6.9 69 573-642 7-76 (92)
381 KOG1949 Uncharacterized conser 50.8 1.8E+02 0.0039 34.5 12.0 144 490-639 177-332 (1005)
382 TIGR00373 conserved hypothetic 50.4 38 0.00083 32.6 5.9 36 97-148 106-141 (158)
383 KOG1941 Acetylcholine receptor 50.3 7.7 0.00017 41.9 1.2 44 99-142 364-412 (518)
384 KOG4464 Signaling protein RIC- 49.9 1.3E+02 0.0028 33.4 10.2 130 490-619 48-197 (532)
385 PF07191 zinc-ribbons_6: zinc- 49.7 2 4.3E-05 35.3 -2.5 42 100-147 1-42 (70)
386 KOG1991 Nuclear transport rece 49.6 1.8E+02 0.004 35.7 12.3 111 487-600 410-535 (1010)
387 smart00531 TFIIE Transcription 49.5 34 0.00074 32.4 5.4 39 98-148 97-136 (147)
388 PLN02915 cellulose synthase A 49.5 11 0.00023 46.3 2.4 46 101-146 16-68 (1044)
389 PRK11088 rrmA 23S rRNA methylt 46.5 9.5 0.00021 39.9 1.2 27 100-126 2-31 (272)
390 smart00638 LPD_N Lipoprotein N 46.4 4.2E+02 0.0091 30.8 15.0 101 447-557 394-509 (574)
391 cd00350 rubredoxin_like Rubred 45.7 16 0.00034 25.4 1.8 11 134-144 16-26 (33)
392 PHA02862 5L protein; Provision 44.7 19 0.00041 33.9 2.7 46 102-148 4-55 (156)
393 KOG0825 PHD Zn-finger protein 44.6 16 0.00036 42.9 2.7 49 94-142 90-150 (1134)
394 KOG1020 Sister chromatid cohes 43.6 2.9E+02 0.0063 35.8 13.0 106 528-641 816-924 (1692)
395 KOG0392 SNF2 family DNA-depend 43.4 7.7E+02 0.017 31.7 16.2 231 403-640 76-327 (1549)
396 PHA02825 LAP/PHD finger-like p 42.7 24 0.00052 33.8 3.1 48 99-147 7-60 (162)
397 PF06012 DUF908: Domain of Unk 42.6 1E+02 0.0022 33.3 8.5 61 503-563 238-303 (329)
398 PF11865 DUF3385: Domain of un 42.5 1.9E+02 0.0041 27.8 9.4 143 487-636 10-155 (160)
399 cd08050 TAF6 TATA Binding Prot 41.6 1.7E+02 0.0036 32.0 9.9 103 404-516 178-297 (343)
400 COG5098 Chromosome condensatio 41.1 2.4E+02 0.0051 33.6 11.0 106 530-640 301-417 (1128)
401 PLN02400 cellulose synthase 40.8 13 0.00029 45.7 1.4 46 101-146 37-89 (1085)
402 KOG0314 Predicted E3 ubiquitin 40.3 13 0.00029 41.4 1.2 69 95-165 214-286 (448)
403 KOG4718 Non-SMC (structural ma 39.4 18 0.00039 36.1 1.8 46 101-147 182-228 (235)
404 PF04499 SAPS: SIT4 phosphatas 39.0 3.4E+02 0.0075 31.0 12.2 111 568-681 20-150 (475)
405 COG3813 Uncharacterized protei 38.6 28 0.00061 28.6 2.5 38 117-157 26-63 (84)
406 COG5098 Chromosome condensatio 38.4 1.6E+02 0.0036 34.8 9.3 107 448-559 301-417 (1128)
407 PF06685 DUF1186: Protein of u 38.3 4.8E+02 0.01 27.1 12.1 73 566-649 70-153 (249)
408 cd00197 VHS_ENTH_ANTH VHS, ENT 38.1 1.5E+02 0.0032 26.4 7.6 70 610-679 38-114 (115)
409 cd00729 rubredoxin_SM Rubredox 36.5 25 0.00055 24.6 1.7 10 135-144 18-27 (34)
410 PF10521 DUF2454: Protein of u 36.3 3.5E+02 0.0076 28.4 11.2 69 446-514 119-201 (282)
411 COG5242 TFB4 RNA polymerase II 36.1 17 0.00036 36.6 1.0 15 100-114 260-274 (296)
412 COG5656 SXM1 Importin, protein 35.7 8.7E+02 0.019 29.4 16.6 118 445-564 407-535 (970)
413 PLN03086 PRLI-interacting fact 35.7 36 0.00079 39.4 3.7 52 95-146 448-515 (567)
414 PRK00420 hypothetical protein; 35.5 24 0.00053 31.9 1.9 30 101-148 24-53 (112)
415 PF06012 DUF908: Domain of Unk 34.9 1.9E+02 0.0041 31.2 9.0 74 544-617 238-324 (329)
416 KOG1812 Predicted E3 ubiquitin 34.3 44 0.00096 37.0 4.1 66 100-166 146-225 (384)
417 COG4530 Uncharacterized protei 33.9 28 0.0006 31.1 1.9 30 99-128 8-42 (129)
418 cd03565 VHS_Tom1 VHS domain fa 33.4 2.2E+02 0.0048 26.7 8.1 73 610-682 39-117 (141)
419 PLN03076 ARF guanine nucleotid 33.1 1.4E+03 0.03 30.9 18.6 103 409-515 1142-1252(1780)
420 KOG0883 Cyclophilin type, U bo 33.0 21 0.00046 38.7 1.3 33 98-130 99-135 (518)
421 PF04388 Hamartin: Hamartin pr 32.5 4.9E+02 0.011 31.2 12.6 133 446-597 4-140 (668)
422 PF12726 SEN1_N: SEN1 N termin 32.5 3E+02 0.0066 33.2 11.1 156 528-684 441-612 (727)
423 cd00730 rubredoxin Rubredoxin; 32.4 21 0.00044 27.5 0.7 13 96-108 30-42 (50)
424 COG5236 Uncharacterized conser 32.1 33 0.00072 36.6 2.5 46 98-144 59-106 (493)
425 KOG1087 Cytosolic sorting prot 32.0 1.1E+02 0.0024 34.8 6.7 71 610-680 39-112 (470)
426 PF04821 TIMELESS: Timeless pr 31.7 4.9E+02 0.011 27.1 11.2 143 480-640 33-210 (266)
427 PF14446 Prok-RING_1: Prokaryo 31.6 38 0.00083 26.5 2.1 27 100-126 5-35 (54)
428 PF14631 FancD2: Fanconi anaem 31.5 1.1E+03 0.024 31.0 16.2 136 487-628 431-573 (1426)
429 PF03854 zf-P11: P-11 zinc fin 31.5 21 0.00045 27.1 0.6 33 115-148 16-48 (50)
430 KOG3899 Uncharacterized conser 31.1 24 0.00053 36.8 1.3 29 121-149 328-368 (381)
431 cd00197 VHS_ENTH_ANTH VHS, ENT 30.4 2.7E+02 0.006 24.7 8.0 71 403-473 36-113 (115)
432 PF06676 DUF1178: Protein of u 30.3 22 0.00047 33.9 0.7 23 117-144 9-41 (148)
433 PF14663 RasGEF_N_2: Rapamycin 30.3 1.6E+02 0.0034 26.7 6.3 39 447-485 9-47 (115)
434 PHA00733 hypothetical protein 30.1 95 0.0021 28.7 4.9 53 99-170 72-126 (128)
435 PF14569 zf-UDP: Zinc-binding 30.0 46 0.00099 28.0 2.4 47 101-147 10-63 (80)
436 PF00301 Rubredoxin: Rubredoxi 29.7 22 0.00048 26.9 0.5 13 96-108 30-42 (47)
437 PF12906 RINGv: RING-variant d 29.6 32 0.0007 25.9 1.4 29 113-141 13-47 (47)
438 cd03565 VHS_Tom1 VHS domain fa 29.5 3.1E+02 0.0068 25.7 8.4 72 403-474 37-114 (141)
439 KOG1566 Conserved protein Mo25 29.0 7.6E+02 0.017 26.7 17.3 200 481-681 73-287 (342)
440 PF10521 DUF2454: Protein of u 28.0 4.7E+02 0.01 27.5 10.4 72 403-474 118-202 (282)
441 PF08389 Xpo1: Exportin 1-like 27.0 3.6E+02 0.0078 24.4 8.5 106 402-511 24-148 (148)
442 PF12231 Rif1_N: Rap1-interact 26.9 8.6E+02 0.019 26.7 12.6 178 496-679 2-203 (372)
443 PLN03205 ATR interacting prote 26.8 1.2E+02 0.0026 33.4 5.6 109 573-682 327-448 (652)
444 COG3364 Zn-ribbon containing p 26.8 32 0.00069 30.3 1.1 24 116-144 6-29 (112)
445 KOG1832 HIV-1 Vpr-binding prot 26.6 3.4E+02 0.0075 33.2 9.5 117 541-661 366-490 (1516)
446 PF07800 DUF1644: Protein of u 26.6 29 0.00063 33.2 0.8 20 99-118 1-20 (162)
447 KOG1949 Uncharacterized conser 26.5 1.2E+03 0.026 28.1 14.8 65 449-514 177-247 (1005)
448 PF09162 Tap-RNA_bind: Tap, RN 26.3 39 0.00084 29.2 1.5 24 114-140 10-33 (88)
449 PF06844 DUF1244: Protein of u 26.2 38 0.00083 27.4 1.3 12 122-133 12-23 (68)
450 PF09845 DUF2072: Zn-ribbon co 26.1 33 0.00072 31.8 1.1 24 116-144 5-28 (131)
451 PF01603 B56: Protein phosphat 25.9 5.3E+02 0.012 28.8 10.9 231 447-682 134-372 (409)
452 PF08216 CTNNBL: Catenin-beta- 25.6 65 0.0014 29.0 2.8 40 423-463 65-104 (108)
453 PF13251 DUF4042: Domain of un 25.6 6.6E+02 0.014 24.8 10.7 137 420-557 2-174 (182)
454 KOG2199 Signal transducing ada 25.4 2.2E+02 0.0048 31.4 7.2 71 610-680 46-118 (462)
455 KOG2487 RNA polymerase II tran 25.4 25 0.00054 36.5 0.2 34 100-154 273-308 (314)
456 PF12830 Nipped-B_C: Sister ch 25.2 3.6E+02 0.0078 26.5 8.4 67 402-473 6-72 (187)
457 PF08746 zf-RING-like: RING-li 24.7 80 0.0017 23.3 2.7 39 103-141 1-43 (43)
458 PF12726 SEN1_N: SEN1 N termin 24.6 4.8E+02 0.01 31.5 10.9 56 461-516 496-553 (727)
459 PF04821 TIMELESS: Timeless pr 24.6 8.1E+02 0.018 25.5 13.2 124 404-558 13-150 (266)
460 KOG1848 Uncharacterized conser 24.6 1.7E+02 0.0037 37.3 6.8 174 487-668 840-1033(1610)
461 PF14311 DUF4379: Domain of un 24.5 40 0.00086 26.1 1.2 23 117-141 33-55 (55)
462 PF01365 RYDR_ITPR: RIH domain 24.4 3E+02 0.0065 27.3 7.8 97 563-662 37-153 (207)
463 KOG2462 C2H2-type Zn-finger pr 24.1 43 0.00092 35.0 1.6 55 94-148 155-228 (279)
464 PRK13908 putative recombinatio 24.1 1.3E+02 0.0028 30.0 4.7 38 97-134 135-183 (204)
465 KOG2005 26S proteasome regulat 23.5 1.3E+03 0.029 27.6 15.4 73 402-476 46-126 (878)
466 PHA03096 p28-like protein; Pro 23.5 48 0.001 35.1 1.9 44 101-144 179-232 (284)
467 PF04423 Rad50_zn_hook: Rad50 23.0 24 0.00051 27.3 -0.4 12 137-148 22-33 (54)
468 cd08050 TAF6 TATA Binding Prot 23.0 3.9E+02 0.0084 29.1 8.9 96 500-595 230-338 (343)
469 TIGR00627 tfb4 transcription f 23.0 53 0.0011 34.7 2.1 12 101-112 256-267 (279)
470 PF14205 Cys_rich_KTR: Cystein 23.0 57 0.0012 25.5 1.6 33 101-144 5-37 (55)
471 PF07923 N1221: N1221-like pro 22.9 1.6E+02 0.0034 31.3 5.7 55 402-456 58-126 (293)
472 PF08216 CTNNBL: Catenin-beta- 22.6 97 0.0021 27.9 3.3 42 463-504 63-104 (108)
473 KOG4642 Chaperone-dependent E3 22.4 17 0.00038 37.3 -1.6 64 93-158 18-81 (284)
474 PF10915 DUF2709: Protein of u 22.1 74 0.0016 31.3 2.7 37 100-145 87-123 (238)
475 TIGR01206 lysW lysine biosynth 21.9 49 0.0011 25.9 1.2 35 100-149 2-36 (54)
476 KOG1791 Uncharacterized conser 21.5 1.3E+03 0.029 30.3 13.5 116 564-679 1535-1659(1758)
477 PF08389 Xpo1: Exportin 1-like 21.4 3.7E+02 0.008 24.3 7.4 61 611-675 84-148 (148)
478 PF09723 Zn-ribbon_8: Zinc rib 21.2 22 0.00048 26.1 -0.8 25 117-143 10-34 (42)
479 KOG2549 Transcription initiati 20.8 1.1E+03 0.024 27.4 11.8 97 542-638 261-370 (576)
480 KOG3842 Adaptor protein Pellin 20.6 90 0.002 33.1 3.1 52 97-148 338-416 (429)
481 KOG2549 Transcription initiati 20.5 1.3E+03 0.029 26.8 12.3 79 500-578 260-348 (576)
482 PRK00448 polC DNA polymerase I 20.2 75 0.0016 41.2 3.0 42 94-147 902-945 (1437)
483 TIGR03847 conserved hypothetic 20.1 1E+02 0.0022 30.1 3.1 22 131-152 152-174 (177)
484 KOG1815 Predicted E3 ubiquitin 20.1 68 0.0015 36.2 2.4 36 98-133 68-104 (444)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.94 E-value=5.4e-25 Score=270.84 Aligned_cols=280 Identities=24% Similarity=0.292 Sum_probs=250.4
Q ss_pred hhhHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccCcccHHHHHh-cCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc
Q 005598 402 IETQVRKLVEDLKST--SLDTQREATAELRLLAKHNMDNRMVIAN-CGAINILVDMLHSSETKIQENAVTALLNLSINDN 478 (689)
Q Consensus 402 ~~~~V~~Lv~~L~s~--~~~~q~~Al~~L~~La~~s~~nr~~i~~-~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~ 478 (689)
....+..|++.|+++ +++.|..|+..|+.|++.++++|..+.+ .|+||.|+.+|.+.+..++++|+.+|.+|+.+++
T Consensus 11 ~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~ 90 (2102)
T PLN03200 11 TLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEED 90 (2102)
T ss_pred hHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHH
Confidence 357889999999976 7889999999999999999999999997 6999999999999999999999999999999999
Q ss_pred cHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccC---chhHHHH-HhhCChHHHHHhhcCCC---HHHHHHHHHH
Q 005598 479 NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI---EDNKIKI-GRSGAIGPLVDLLGNGT---PRGKKDAATA 551 (689)
Q Consensus 479 ~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~---~~~k~~I-~~~g~I~~Lv~LL~~~~---~~v~~~Al~a 551 (689)
++..|+..|++++|+.+|++++.+.+++|+++|++|+.. +.++..| +..|+++.|+++|++++ ..++..++.+
T Consensus 91 nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~A 170 (2102)
T PLN03200 91 LRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGA 170 (2102)
T ss_pred HHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999986 4456554 45799999999999874 2355677899
Q ss_pred HHhhhhchHHHHH-HHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCC-chhHHHHHhcCcHHHHHHHhccC-CHHHHH
Q 005598 552 LFNLSIYHENKAR-IVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI-PDGRVAIGQENGIPVLVEVVELG-SARGKE 627 (689)
Q Consensus 552 L~nLs~~~~n~~~-lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~-~e~r~~i~~~g~v~~Lv~lL~s~-s~~~~e 627 (689)
|+||+.+.+++.. ++++|+|+.|+.+| +.+..++..|+.+|.+++.+ ++++..+++.|+|+.|+++|.++ ++.+++
T Consensus 171 L~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE 250 (2102)
T PLN03200 171 LRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRA 250 (2102)
T ss_pred HHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHH
Confidence 9999999998865 58999999999999 56778889999999998875 67899999999999999999875 569999
Q ss_pred HHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCC---------HHHHHHHHHHHHHhhcC
Q 005598 628 NAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGT---------PRAKEKAQALLSYFRNQ 681 (689)
Q Consensus 628 ~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~---------~~vr~~A~~lL~~L~~~ 681 (689)
+|+++|.+||.++.+++..+++.|+++.|+.++...+ ...++.|.|+|.+|.+.
T Consensus 251 ~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg 313 (2102)
T PLN03200 251 EAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG 313 (2102)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999998654 34589999999998763
No 2
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.6e-25 Score=242.88 Aligned_cols=279 Identities=23% Similarity=0.289 Sum_probs=251.4
Q ss_pred hhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-CccH
Q 005598 403 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 480 (689)
Q Consensus 403 ~~~V~~Lv~~L~-s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~-~~~k 480 (689)
.+.|+.+|+.|. ..++..|..|+++|.++|.++.+....++++|++|.|+.+|.+++..++++|+|+|+|++.+ +..|
T Consensus 108 ~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~R 187 (514)
T KOG0166|consen 108 SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCR 187 (514)
T ss_pred cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHH
Confidence 489999999997 55699999999999999999999999999999999999999999999999999999999866 6789
Q ss_pred HHHHHcCCHHHHHHHHcCCCH-HHHHHHHHHHHhcccCchhHHHHHh-hCChHHHHHhhcCCCHHHHHHHHHHHHhhhh-
Q 005598 481 SAIANANAIEPLIHVLQTGSP-EARENAAATLFSLSVIEDNKIKIGR-SGAIGPLVDLLGNGTPRGKKDAATALFNLSI- 557 (689)
Q Consensus 481 ~~i~~~g~l~~Lv~lL~s~~~-~~~~~Aa~aL~nLs~~~~~k~~I~~-~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~- 557 (689)
..+.+.|++++|+.++...+. ....+++|+|.||+...+....+.. ..+++.|..+|.+.+..+...|+|||.+|+.
T Consensus 188 d~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg 267 (514)
T KOG0166|consen 188 DYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG 267 (514)
T ss_pred HHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 999999999999999987764 7889999999999987655444443 4789999999999999999999999999997
Q ss_pred chHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchh-HHHHHhcCcHHHHHHHhc-cCCHHHHHHHHHHHH
Q 005598 558 YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDG-RVAIGQENGIPVLVEVVE-LGSARGKENAAAALL 634 (689)
Q Consensus 558 ~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~-r~~i~~~g~v~~Lv~lL~-s~s~~~~e~Av~aL~ 634 (689)
.++..+.+++.|+++.|+++| +.+..++..|+.++.|++...+. .+.+++.|+++.|..+|. +.....+..|+++|.
T Consensus 268 ~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iS 347 (514)
T KOG0166|consen 268 SNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTIS 347 (514)
T ss_pred ChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHH
Confidence 456677788999999999999 67778889999999999986555 677889999999999998 456668999999999
Q ss_pred HHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 005598 635 QLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 681 (689)
Q Consensus 635 ~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~~ 681 (689)
|++.++.++.+.++..|.+|.|+.+++.+.-++|+.|+|++.++...
T Consensus 348 NItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 348 NITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred HhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999987643
No 3
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.93 E-value=4.6e-24 Score=262.69 Aligned_cols=279 Identities=23% Similarity=0.322 Sum_probs=245.6
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHH-
Q 005598 403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS- 481 (689)
Q Consensus 403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~- 481 (689)
.+.++.|+++|++++...|..|++.|++++..+++++..+.+.|+||.|+.+|.+++.+++++|+|+|.||+.+..+..
T Consensus 445 ~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~ 524 (2102)
T PLN03200 445 REGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRA 524 (2102)
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4578999999999999999999999999999888999999999999999999999999999999999999998765544
Q ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhH-------------------------------------HH-
Q 005598 482 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK-------------------------------------IK- 523 (689)
Q Consensus 482 ~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k-------------------------------------~~- 523 (689)
.+.+.|++++|+++|++++.+.+..|+++|++|+...+.. ..
T Consensus 525 iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g 604 (2102)
T PLN03200 525 CVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREG 604 (2102)
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHh
Confidence 4557899999999999999999999999999996322110 01
Q ss_pred HHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhc-hHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC--Cc
Q 005598 524 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT--IP 599 (689)
Q Consensus 524 I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~-~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~--~~ 599 (689)
....|+++.|+++|++++..+++.|+++|.+++.. ++++..++..|+++.|+.+| ..+.++...|+++|.+|+. ..
T Consensus 605 ~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~ 684 (2102)
T PLN03200 605 SAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKE 684 (2102)
T ss_pred hhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCH
Confidence 11348999999999999999999999999999984 46678899999999999999 5677888999999999996 33
Q ss_pred hhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 005598 600 DGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 679 (689)
Q Consensus 600 e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~ 679 (689)
..+..+++.|+++.|+++|...+..+++.|+.+|.+++...+ .+..+...|+++.|+.++++|+++.|+.|+++|..|.
T Consensus 685 ~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e-~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~ 763 (2102)
T PLN03200 685 NRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE-VAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLL 763 (2102)
T ss_pred HHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch-HHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 446678899999999999999999999999999999999887 6677778999999999999999999999999887776
Q ss_pred cCc
Q 005598 680 NQR 682 (689)
Q Consensus 680 ~~~ 682 (689)
++.
T Consensus 764 ~~~ 766 (2102)
T PLN03200 764 KHF 766 (2102)
T ss_pred hCC
Confidence 554
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.9e-24 Score=221.63 Aligned_cols=280 Identities=24% Similarity=0.361 Sum_probs=257.6
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 005598 404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 483 (689)
Q Consensus 404 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i 483 (689)
..+..|+..+.+...++|..++.+|.+|+.. ..+|..++..|++..|.++-++.+..+|.++..+|.|+....++|..+
T Consensus 126 ~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~L 204 (550)
T KOG4224|consen 126 LGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVL 204 (550)
T ss_pred cChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhh
Confidence 3456666667677778999999999999986 589999999999999999888899999999999999999999999999
Q ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhC--ChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHH
Q 005598 484 ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSG--AIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN 561 (689)
Q Consensus 484 ~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g--~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n 561 (689)
+.+|++|.|+.+|++++.++++++..+|.+++.+...|..+++.+ .++.||+++++++++++..|..||.||+...+-
T Consensus 205 V~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Y 284 (550)
T KOG4224|consen 205 VHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEY 284 (550)
T ss_pred hccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchh
Confidence 999999999999999999999999999999999999999999886 999999999999999999999999999999999
Q ss_pred HHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccC-CHHHHHHHHHHHHHHhhC
Q 005598 562 KARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG-SARGKENAAAALLQLCTN 639 (689)
Q Consensus 562 ~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~-s~~~~e~Av~aL~~L~~~ 639 (689)
+..++++|.+|.++++| ++..+..-..+.++.||+.++-+...|+++|++.+||.+|..+ +++.+-+|+.+|++|+..
T Consensus 285 q~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAas 364 (550)
T KOG4224|consen 285 QREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAAS 364 (550)
T ss_pred hhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhh
Confidence 99999999999999999 5667778888999999999999999999999999999999876 567999999999999999
Q ss_pred CHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCcCC
Q 005598 640 SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHG 684 (689)
Q Consensus 640 ~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~~~~~ 684 (689)
++.++..+.+.|++++|..|+..+.-.++.....++..|.=....
T Consensus 365 se~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~ 409 (550)
T KOG4224|consen 365 SEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDND 409 (550)
T ss_pred hhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999988998888888777644433
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=9.9e-24 Score=216.43 Aligned_cols=278 Identities=24% Similarity=0.336 Sum_probs=257.4
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHH
Q 005598 402 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 481 (689)
Q Consensus 402 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~ 481 (689)
..+.+..|.++-++.+..+|..+...|.+++. +.+||+.++.+|++|.|+.++.+.+..+|+.++.++.|++.+..+|+
T Consensus 165 ~sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk 243 (550)
T KOG4224|consen 165 RSGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARK 243 (550)
T ss_pred hccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHH
Confidence 34667778887788899999999999999988 66999999999999999999999999999999999999999999999
Q ss_pred HHHHcC--CHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhch
Q 005598 482 AIANAN--AIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH 559 (689)
Q Consensus 482 ~i~~~g--~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~ 559 (689)
.+++.+ .++.|+.++.++++.++..|..+|.+|+.+.+++..|++.|.+|.+|++|+++......+.+.++.|++..+
T Consensus 244 ~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihp 323 (550)
T KOG4224|consen 244 ILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHP 323 (550)
T ss_pred HHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccccc
Confidence 999987 999999999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred HHHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHH
Q 005598 560 ENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQL 636 (689)
Q Consensus 560 ~n~~~lv~~G~v~~Lv~LL--~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L 636 (689)
-|...++++|.+..|+.+| .++.+++..|..+|+||+. ...++..+.+.|+++.+.+++..+.-.++.....++..|
T Consensus 324 lNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~L 403 (550)
T KOG4224|consen 324 LNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQL 403 (550)
T ss_pred CcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 9999999999999999999 3556789999999999998 566789999999999999999999999999988888888
Q ss_pred hhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 005598 637 CTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 681 (689)
Q Consensus 637 ~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~~ 681 (689)
+.++. .+..+.+.|.++.|+.+..+.+.+++.+|+.+|-+|...
T Consensus 404 al~d~-~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 404 ALNDN-DKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred Hhccc-cHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence 87765 678888999999999999999999999999999888754
No 6
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=5e-22 Score=217.22 Aligned_cols=281 Identities=23% Similarity=0.287 Sum_probs=245.5
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCH-HHHHHHHHHHHHhhcCCccHH
Q 005598 403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSET-KIQENAVTALLNLSINDNNKS 481 (689)
Q Consensus 403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~-~v~~~Al~aL~nLs~~~~~k~ 481 (689)
.+.|+.++.++.+++.+++.+|+++|.+++.+++..|..+..+|+++.|+.++...+. .+..++.|+|.|||.+.+...
T Consensus 151 agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P 230 (514)
T KOG0166|consen 151 AGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSP 230 (514)
T ss_pred CCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCC
Confidence 3678899999999999999999999999999999999999999999999999988765 678999999999997754333
Q ss_pred HHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchh-HHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhch
Q 005598 482 AIA-NANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDN-KIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH 559 (689)
Q Consensus 482 ~i~-~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~-k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~ 559 (689)
.+. -...++.|.++|.+.+.++...|+|+|.+|+....- -..+.+.|+++.|+++|.+....++..|++++.|++...
T Consensus 231 ~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~ 310 (514)
T KOG0166|consen 231 PFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGS 310 (514)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeecc
Confidence 332 346899999999999999999999999999975444 445567899999999999999999999999999998855
Q ss_pred -HHHHHHHHhCcHHHHHHhcC--CChHHHHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHH
Q 005598 560 -ENKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQ 635 (689)
Q Consensus 560 -~n~~~lv~~G~v~~Lv~LL~--~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~ 635 (689)
...+.++..|+++.|..+|. +...++..|+|++.|++. +.+..++++++|.+|.|+.+|.+++.+.+..|++++.|
T Consensus 311 d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN 390 (514)
T KOG0166|consen 311 DEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISN 390 (514)
T ss_pred HHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHh
Confidence 45567789999999999993 445588999999999988 55678999999999999999999999999999999999
Q ss_pred HhhCC-HhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCcC
Q 005598 636 LCTNS-SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRH 683 (689)
Q Consensus 636 L~~~~-~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~~~~ 683 (689)
++..+ ++....+++.|+|++|+.+|...+.++...+...|.++-...+
T Consensus 391 ~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e 439 (514)
T KOG0166|consen 391 LTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGE 439 (514)
T ss_pred hcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHH
Confidence 98875 5777888999999999999988888888888888888766443
No 7
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.89 E-value=8.1e-23 Score=208.18 Aligned_cols=281 Identities=22% Similarity=0.233 Sum_probs=243.8
Q ss_pred hhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-CccH
Q 005598 403 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 480 (689)
Q Consensus 403 ~~~V~~Lv~~L~-s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~-~~~k 480 (689)
.+.|+.++++|. ....-.|.+|++.|.+++.+.......++++|++|.++++|.+.+.+|+++++|+|+|++-+ +..|
T Consensus 113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~R 192 (526)
T COG5064 113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCR 192 (526)
T ss_pred ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHH
Confidence 368899999995 45556788999999999998877777788999999999999999999999999999999866 6678
Q ss_pred HHHHHcCCHHHHHHHHcCCC--HHHHHHHHHHHHhcccCchhHHHHH-hhCChHHHHHhhcCCCHHHHHHHHHHHHhhhh
Q 005598 481 SAIANANAIEPLIHVLQTGS--PEARENAAATLFSLSVIEDNKIKIG-RSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 557 (689)
Q Consensus 481 ~~i~~~g~l~~Lv~lL~s~~--~~~~~~Aa~aL~nLs~~~~~k~~I~-~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~ 557 (689)
..+.+.|++.+++.+|.+.. ..+..++.|+|.||+.-......-. -..+++.|.+|+.+.++++...|+|||..|+.
T Consensus 193 D~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsD 272 (526)
T COG5064 193 DYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSD 272 (526)
T ss_pred HHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc
Confidence 89999999999999998764 4788999999999997433221111 12568999999999999999999999999998
Q ss_pred ch-HHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchh-HHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHH
Q 005598 558 YH-ENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDG-RVAIGQENGIPVLVEVVELGSARGKENAAAALL 634 (689)
Q Consensus 558 ~~-~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~-r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~ 634 (689)
.+ +..+.+++.|+...|+++| +++..+...|+..++|+....+. .+.+++.|+++.+..+|.+..+.++..||+++.
T Consensus 273 g~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiS 352 (526)
T COG5064 273 GPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTIS 352 (526)
T ss_pred CcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeec
Confidence 55 5567788999999999999 67777889999999999986555 567789999999999999988899999999999
Q ss_pred HHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCcC
Q 005598 635 QLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRH 683 (689)
Q Consensus 635 ~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~~~~ 683 (689)
|+..++.++.+.+++.+.+|+|+.+|..-.-++|+.|.|++.+......
T Consensus 353 NITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~ 401 (526)
T COG5064 353 NITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGL 401 (526)
T ss_pred ccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 9999999999999999999999999999999999999998887765443
No 8
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.87 E-value=7.7e-23 Score=170.46 Aligned_cols=73 Identities=47% Similarity=0.862 Sum_probs=64.4
Q ss_pred CCCccccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCCccHHHHHHHHHHHHHcCC
Q 005598 97 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNV 169 (689)
Q Consensus 97 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~~ 169 (689)
||++|+||||+++|+|||++++||||||.+|++|+..++.+||+|+++++..+|+||..||+.|++|+.+|.+
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~~ 73 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENKK 73 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCTC
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHccC
Confidence 6999999999999999999999999999999999999778899999999999999999999999999999864
No 9
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.84 E-value=2.8e-20 Score=189.75 Aligned_cols=278 Identities=22% Similarity=0.247 Sum_probs=240.7
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCC--HHHHHHHHHHHHHhhcCCccH
Q 005598 403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSE--TKIQENAVTALLNLSINDNNK 480 (689)
Q Consensus 403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~--~~v~~~Al~aL~nLs~~~~~k 480 (689)
.+.|+.++.+|.+.+.+++.+++++|.+++.+++..|..+.+.|++..|+.+|.++- ..+..++.|.|.||+...+..
T Consensus 156 ~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~ 235 (526)
T COG5064 156 AGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPP 235 (526)
T ss_pred CCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCC
Confidence 368999999999999999999999999999999999999999999999999998754 478899999999999653321
Q ss_pred H-HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhH-HHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhc
Q 005598 481 S-AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK-IKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY 558 (689)
Q Consensus 481 ~-~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k-~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~ 558 (689)
. --.-..+++.|.+++.+.++++...|+|+|..|+..+.-+ ..+.+.|+.+.||++|.+++..++.-|++.+.|+...
T Consensus 236 P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG 315 (526)
T COG5064 236 PDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTG 315 (526)
T ss_pred CchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeec
Confidence 1 1112346899999999999999999999999998765544 4456779999999999999999999999999999885
Q ss_pred hH-HHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHH
Q 005598 559 HE-NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQ 635 (689)
Q Consensus 559 ~~-n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~ 635 (689)
.+ ..+.++..|+++.+..+| ++...+...|+|++.|+.. +.+..+++++.+.+|.|+.+|...+-..+..||+++.|
T Consensus 316 ~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisN 395 (526)
T COG5064 316 SDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISN 395 (526)
T ss_pred CccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 54 456678999999999999 5666888999999999977 56677899999999999999999999999999999999
Q ss_pred HhhCC---HhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 005598 636 LCTNS---SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 680 (689)
Q Consensus 636 L~~~~---~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~ 680 (689)
...++ ++....++..|++.+|+.+|...+.++-+.|..+++++-+
T Consensus 396 atsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk 443 (526)
T COG5064 396 ATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILK 443 (526)
T ss_pred hhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence 98765 5778888999999999999999888888888888777654
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.76 E-value=2.1e-16 Score=181.85 Aligned_cols=278 Identities=19% Similarity=0.246 Sum_probs=226.5
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHH
Q 005598 402 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 481 (689)
Q Consensus 402 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~ 481 (689)
..+.|+.|++.|.+++.+....++..|.+|+.. .+|+..+.+.|+|+.|+.++.+++.+++..++.+|.||+.+++.|.
T Consensus 288 ~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~ 366 (708)
T PF05804_consen 288 NKGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRS 366 (708)
T ss_pred hcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 467889999999999999999999999999984 5799999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHHhhhhchH
Q 005598 482 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHE 560 (689)
Q Consensus 482 ~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~~~ 560 (689)
.+++.|++|.|+.+|.++ ..+..+..+|.+||.++++|..+...++++.|+++|-.+ ...+...++.++.||+.++.
T Consensus 367 ~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r 444 (708)
T PF05804_consen 367 QMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKR 444 (708)
T ss_pred HHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH
Confidence 999999999999999865 455679999999999999999998889999999987654 56677778888889999998
Q ss_pred HHHHHHHhCcHHHHHHhc-C--------------------------------------CChHHHHHHHHHHHHHh-----
Q 005598 561 NKARIVQAGAVKHLVDLM-D--------------------------------------PAAGMVDKAVAVLANLA----- 596 (689)
Q Consensus 561 n~~~lv~~G~v~~Lv~LL-~--------------------------------------~~~~v~e~Al~~L~nLa----- 596 (689)
|.+.+++.|+++.|++.. . ++.+..-.++++|+||.
T Consensus 445 naqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld 524 (708)
T PF05804_consen 445 NAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLD 524 (708)
T ss_pred HHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcC
Confidence 888888877777766532 1 11223334666666663
Q ss_pred ---------------------------------------CCchhHHHHHhcCcHHHHHHHhcc--CCHHHHHHHHHHHHH
Q 005598 597 ---------------------------------------TIPDGRVAIGQENGIPVLVEVVEL--GSARGKENAAAALLQ 635 (689)
Q Consensus 597 ---------------------------------------~~~e~r~~i~~~g~v~~Lv~lL~s--~s~~~~e~Av~aL~~ 635 (689)
..+.....+.+.|.++.|+.+|.. .+++..-..+.++++
T Consensus 525 ~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ 604 (708)
T PF05804_consen 525 WAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQ 604 (708)
T ss_pred HHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence 333344445566777777777754 356666777888888
Q ss_pred HhhCCHhhHHHHH-hCCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCcC
Q 005598 636 LCTNSSRFCSMVL-QEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRH 683 (689)
Q Consensus 636 L~~~~~~~~~~lv-~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~~~~ 683 (689)
+..+.+ .+..++ +.+++..|+.++++.++.+++.|-.+|..+..+..
T Consensus 605 ll~h~~-tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 605 LLFHEE-TREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred HHcChH-HHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 888866 445554 47899999999999999999999999988877543
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.72 E-value=1.9e-15 Score=174.09 Aligned_cols=252 Identities=21% Similarity=0.253 Sum_probs=215.6
Q ss_pred HHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHcCC
Q 005598 420 TQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTG 499 (689)
Q Consensus 420 ~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~s~ 499 (689)
..+.+...|.+|+. +..+...+.+.|+|+.|+.+|.+.+.+++..++.+|.+|+...+||..+.+.|+++.|++++.++
T Consensus 265 Llrv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~ 343 (708)
T PF05804_consen 265 LLRVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSE 343 (708)
T ss_pred HHHHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCC
Confidence 34567778999988 56888889999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-
Q 005598 500 SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM- 578 (689)
Q Consensus 500 ~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL- 578 (689)
+.+++..++.+|+|||.+++.|..|+..|++|.|+.+|.+++ .+..++.+|++||..++++..+...++++.|++++
T Consensus 344 ~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll 421 (708)
T PF05804_consen 344 NEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLL 421 (708)
T ss_pred CHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHH
Confidence 999999999999999999999999999999999999998754 44568999999999999999999999999999987
Q ss_pred -CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHH
Q 005598 579 -DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLV 657 (689)
Q Consensus 579 -~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~ 657 (689)
.++..+...+++++.||+.++.+.+.+.+.++++.|++......+. ....+|.|++.+.+..+..+. +.+..|+
T Consensus 422 ~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~---lLlKlIRNiS~h~~~~k~~f~--~~i~~L~ 496 (708)
T PF05804_consen 422 ENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDP---LLLKLIRNISQHDGPLKELFV--DFIGDLA 496 (708)
T ss_pred hCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccH---HHHHHHHHHHhcCchHHHHHH--HHHHHHH
Confidence 3455566678999999999999999999999999999987654332 234689999999865555554 4688888
Q ss_pred HhhhcCC-HHHHHHHHHHHHHhh
Q 005598 658 ALSQSGT-PRAKEKAQALLSYFR 679 (689)
Q Consensus 658 ~LL~~~~-~~vr~~A~~lL~~L~ 679 (689)
.++..+. +...-.+..+|.+|.
T Consensus 497 ~~v~~~~~ee~~vE~LGiLaNL~ 519 (708)
T PF05804_consen 497 KIVSSGDSEEFVVECLGILANLT 519 (708)
T ss_pred HHhhcCCcHHHHHHHHHHHHhcc
Confidence 8887764 556666666666665
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.71 E-value=3.5e-16 Score=176.35 Aligned_cols=281 Identities=23% Similarity=0.257 Sum_probs=228.9
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC---Cc
Q 005598 402 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN---DN 478 (689)
Q Consensus 402 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~---~~ 478 (689)
....+++.+.+|.+.++.+|.+|+..|..+++.+.+.+..+.+.|+|+.|+.+|.+.+.+|+.+|+++|.||... ++
T Consensus 231 ~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~ 310 (717)
T KOG1048|consen 231 RDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDS 310 (717)
T ss_pred cccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcc
Confidence 356789999999999999999999999999999999999999999999999999999999999999999999854 46
Q ss_pred cHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCC--------------CHH
Q 005598 479 NKSAIANANAIEPLIHVLQT-GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG--------------TPR 543 (689)
Q Consensus 479 ~k~~i~~~g~l~~Lv~lL~s-~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~--------------~~~ 543 (689)
|+..|.+.++++.++++|+. ++.++++.++++||||++++..+..|... ++..|.+.+-.+ ...
T Consensus 311 NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~ 389 (717)
T KOG1048|consen 311 NKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDST 389 (717)
T ss_pred cchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccce
Confidence 89999999999999999996 78999999999999999998888777553 455555544311 256
Q ss_pred HHHHHHHHHHhhhh-chHHHHHHHH-hCcHHHHHHhc-------CCChHHHHHHHHHHHHHhCCch-----h-HH-----
Q 005598 544 GKKDAATALFNLSI-YHENKARIVQ-AGAVKHLVDLM-------DPAAGMVDKAVAVLANLATIPD-----G-RV----- 603 (689)
Q Consensus 544 v~~~Al~aL~nLs~-~~~n~~~lv~-~G~v~~Lv~LL-------~~~~~v~e~Al~~L~nLa~~~e-----~-r~----- 603 (689)
+..++..+|.|++. ..+.+.+|.+ .|.|..|+..+ +.+...++.|+.+|.||...-+ . +.
T Consensus 390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~ 469 (717)
T KOG1048|consen 390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANI 469 (717)
T ss_pred eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcc
Confidence 77899999999999 7788999987 89999999876 2467789999999999865211 0 00
Q ss_pred ---------------------H----------------------HHhcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhhC
Q 005598 604 ---------------------A----------------------IGQENGIPVLVEVV-ELGSARGKENAAAALLQLCTN 639 (689)
Q Consensus 604 ---------------------~----------------------i~~~g~v~~Lv~lL-~s~s~~~~e~Av~aL~~L~~~ 639 (689)
. +.+..+|..-+.+| .+..+.+.+.++.+|-||+..
T Consensus 470 ~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~ 549 (717)
T KOG1048|consen 470 ARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAG 549 (717)
T ss_pred cccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhcc
Confidence 0 00111223323334 356889999999999999987
Q ss_pred CH----hhHHHH-HhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCcC
Q 005598 640 SS----RFCSMV-LQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRH 683 (689)
Q Consensus 640 ~~----~~~~~l-v~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~~~~ 683 (689)
.. ..+..+ .++.+.+.|+.+++.+++++.+.++.+|++|+...-
T Consensus 550 ~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~r 598 (717)
T KOG1048|consen 550 LWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIR 598 (717)
T ss_pred CCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCch
Confidence 63 455555 679999999999999999999999999999987543
No 13
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.69 E-value=4.1e-16 Score=181.14 Aligned_cols=261 Identities=26% Similarity=0.301 Sum_probs=221.5
Q ss_pred HH-HHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCC------------CHHHHHHHHHHHHHhhcC-CccHHHHHH-
Q 005598 421 QR-EATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS------------ETKIQENAVTALLNLSIN-DNNKSAIAN- 485 (689)
Q Consensus 421 q~-~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~------------~~~v~~~Al~aL~nLs~~-~~~k~~i~~- 485 (689)
|. .|+..|-++.+ +++.|..+-+.|++..+..||.-+ ...++..|..+|.||... ..||..+..
T Consensus 314 ~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~ 392 (2195)
T KOG2122|consen 314 QLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQ 392 (2195)
T ss_pred hhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhh
Confidence 44 67778888888 679999999999999999987532 235889999999999866 467777665
Q ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCch--hHHHHHhhCChHHHHHh-hcCCCHHHHHHHHHHHHhhhh-chHH
Q 005598 486 ANAIEPLIHVLQTGSPEARENAAATLFSLSVIED--NKIKIGRSGAIGPLVDL-LGNGTPRGKKDAATALFNLSI-YHEN 561 (689)
Q Consensus 486 ~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~--~k~~I~~~g~I~~Lv~L-L~~~~~~v~~~Al~aL~nLs~-~~~n 561 (689)
.|++..+|..|.+...++....+.+|.||+...+ .+..+.+.|-+..|+.. |+.......+..+.|||||+. ..+|
T Consensus 393 rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteN 472 (2195)
T KOG2122|consen 393 RGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTEN 472 (2195)
T ss_pred hhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccccc
Confidence 5999999999999999999999999999998433 35556666999998877 556667889999999999988 5689
Q ss_pred HHHHHH-hCcHHHHHHhcC-----CChHHHHHHHHHHHHHh----CCchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHH
Q 005598 562 KARIVQ-AGAVKHLVDLMD-----PAAGMVDKAVAVLANLA----TIPDGRVAIGQENGIPVLVEVVELGSARGKENAAA 631 (689)
Q Consensus 562 ~~~lv~-~G~v~~Lv~LL~-----~~~~v~e~Al~~L~nLa----~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~ 631 (689)
|..|.. .|++..|+.+|. ..-.+++.|-++|.|.+ .+...|+.+.+.+.+..|++.|++.+-.+.-++|+
T Consensus 473 KA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCG 552 (2195)
T KOG2122|consen 473 KAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACG 552 (2195)
T ss_pred chhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchh
Confidence 999998 899999999993 23467899999999954 47788999999999999999999999999999999
Q ss_pred HHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCc
Q 005598 632 ALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 682 (689)
Q Consensus 632 aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~~~ 682 (689)
+||||...+++.++.+++.|+++.|..|+.+.+..+.+-++..|++|-+++
T Consensus 553 TLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 553 TLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 999999999999999999999999999999999877766666666666555
No 14
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.68 E-value=2.8e-17 Score=133.10 Aligned_cols=63 Identities=52% Similarity=0.892 Sum_probs=60.0
Q ss_pred ccccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCCccHHHHHHHHHH
Q 005598 100 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANW 163 (689)
Q Consensus 100 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~ 163 (689)
+|.||||+++|+|||+++|||+|||.||.+|+.. +.+||.|+++++..+++||..||+.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 5899999999999999999999999999999987 46799999999999999999999999988
No 15
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=5e-14 Score=144.46 Aligned_cols=275 Identities=17% Similarity=0.232 Sum_probs=229.9
Q ss_pred HHHHHHHHhc--CCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCcc--
Q 005598 405 QVRKLVEDLK--STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-ETKIQENAVTALLNLSINDNN-- 479 (689)
Q Consensus 405 ~V~~Lv~~L~--s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~-~~~v~~~Al~aL~nLs~~~~~-- 479 (689)
....++++|. .++.++-...+..++.-+..++.||..|.+.++.+.+...|... ..++...+.+++..|..+++.
T Consensus 146 g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV 225 (461)
T KOG4199|consen 146 AMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRV 225 (461)
T ss_pred cHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceee
Confidence 3445556655 45666777788899988888899999999999999999777553 346888889999999876654
Q ss_pred --------HHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCC----HHHHH
Q 005598 480 --------KSAIANANAIEPLIHVLQTG-SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGT----PRGKK 546 (689)
Q Consensus 480 --------k~~i~~~g~l~~Lv~lL~s~-~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~----~~v~~ 546 (689)
...|+..|++..|++.|+.+ ++.+...+..+|..|+..++.+..|.+.|++..|+.++.+.+ ....+
T Consensus 226 ~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k 305 (461)
T KOG4199|consen 226 VFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAK 305 (461)
T ss_pred ecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHH
Confidence 35577788999999999865 577888899999999999999999999999999999998742 34567
Q ss_pred HHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc---CCChHHHHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHhcc--
Q 005598 547 DAATALFNLSIYHENKARIVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL-- 620 (689)
Q Consensus 547 ~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL---~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~v~~Lv~lL~s-- 620 (689)
.++.+|..|+.++.++..+|+.|+.+.++.++ .+++-+++.++.++..||. .++.-..+++.|+-...++.|+.
T Consensus 306 ~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP 385 (461)
T KOG4199|consen 306 TCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHP 385 (461)
T ss_pred HHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCc
Confidence 89999999999999999999999999999987 4677788999999999997 77788888999999999999975
Q ss_pred CCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 005598 621 GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 680 (689)
Q Consensus 621 ~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~ 680 (689)
....++.+|++.+.|+...+..++..++. .++..|+......++.+...|..+|+-|-.
T Consensus 386 ~~a~vQrnac~~IRNiv~rs~~~~~~~l~-~GiE~Li~~A~~~h~tce~~akaALRDLGc 444 (461)
T KOG4199|consen 386 VAAQVQRNACNMIRNIVVRSAENRTILLA-NGIEKLIRTAKANHETCEAAAKAALRDLGC 444 (461)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccchHHh-ccHHHHHHHHHhcCccHHHHHHHHHHhcCc
Confidence 35788999999999999999877777766 567888888888888888888888887643
No 16
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=1.1e-12 Score=134.66 Aligned_cols=266 Identities=15% Similarity=0.242 Sum_probs=225.1
Q ss_pred hcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcC--CCHHHHHHHHHHHHHhh-cCCccHHHHHHcCCH
Q 005598 413 LKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS--SETKIQENAVTALLNLS-INDNNKSAIANANAI 489 (689)
Q Consensus 413 L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s--~~~~v~~~Al~aL~nLs-~~~~~k~~i~~~g~l 489 (689)
-.+++.....+++..|..++...|. +.++.+...++.+|.. ++.++....+..+..-+ .++.+|..+++.+.+
T Consensus 116 a~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il 191 (461)
T KOG4199|consen 116 AESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL 191 (461)
T ss_pred hhCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence 4467888889999999999886654 4566788889998854 46677777777776665 568899999999999
Q ss_pred HHHHHHHcC-CCHHHHHHHHHHHHhcccCchhH----------HHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHHhhhh
Q 005598 490 EPLIHVLQT-GSPEARENAAATLFSLSVIEDNK----------IKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSI 557 (689)
Q Consensus 490 ~~Lv~lL~s-~~~~~~~~Aa~aL~nLs~~~~~k----------~~I~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~ 557 (689)
+.+...|.. +...+...+.++++.|..+++.| ..|+..|++..|++.|+-+ ++.+...++.+|..|+.
T Consensus 192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV 271 (461)
T KOG4199|consen 192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV 271 (461)
T ss_pred HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence 999977764 44567888899999998877644 4577778999999999976 68899999999999999
Q ss_pred chHHHHHHHHhCcHHHHHHhcCC--C---hHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhc--cCCHHHHHHHH
Q 005598 558 YHENKARIVQAGAVKHLVDLMDP--A---AGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVE--LGSARGKENAA 630 (689)
Q Consensus 558 ~~~n~~~lv~~G~v~~Lv~LL~~--~---~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~--s~s~~~~e~Av 630 (689)
.++.+..+.+.|++..|+.++++ + ......++.+|..|+.+.+.+..|++.|+.+.++.++. +.+|.+.+.++
T Consensus 272 r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~ 351 (461)
T KOG4199|consen 272 RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVM 351 (461)
T ss_pred HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHH
Confidence 99999999999999999999932 2 23567899999999999999999999999999999985 46899999999
Q ss_pred HHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCC--HHHHHHHHHHHHHhhcCc
Q 005598 631 AALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGT--PRAKEKAQALLSYFRNQR 682 (689)
Q Consensus 631 ~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~--~~vr~~A~~lL~~L~~~~ 682 (689)
.++.-||...+++...+++.|+-...++-|+... ..++++|.++++++..+.
T Consensus 352 a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs 405 (461)
T KOG4199|consen 352 AIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS 405 (461)
T ss_pred HHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999888775 469999999999997653
No 17
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.53 E-value=4.2e-13 Score=151.71 Aligned_cols=279 Identities=22% Similarity=0.251 Sum_probs=222.9
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcc--cHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCcc
Q 005598 403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMD--NRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNN 479 (689)
Q Consensus 403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~--nr~~i~~~g~I~~Lv~lL~s-~~~~v~~~Al~aL~nLs~~~~~ 479 (689)
-+.|+.||.+|.+.+.++|.+|+++|++|.+.+.. |+..|.+.++|+.|+++|+. .|.++++.+..+|+||+..+..
T Consensus 274 lggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~l 353 (717)
T KOG1048|consen 274 LGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDAL 353 (717)
T ss_pred hccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHH
Confidence 45789999999999999999999999999987766 89999999999999999987 6899999999999999988766
Q ss_pred HHHHHHcCCHHHHHHHHcCC--------------CHHHHHHHHHHHHhccc-CchhHHHHHhh-CChHHHHHhhcC----
Q 005598 480 KSAIANANAIEPLIHVLQTG--------------SPEARENAAATLFSLSV-IEDNKIKIGRS-GAIGPLVDLLGN---- 539 (689)
Q Consensus 480 k~~i~~~g~l~~Lv~lL~s~--------------~~~~~~~Aa~aL~nLs~-~~~~k~~I~~~-g~I~~Lv~LL~~---- 539 (689)
|..++.. ++..|..-+-.+ ..++-.+++++|.|++. ..+.+..+.+. |.|..|+.++++
T Consensus 354 K~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~ 432 (717)
T KOG1048|consen 354 KMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQK 432 (717)
T ss_pred HHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHh
Confidence 6666553 344444322110 24567788999999977 66778888776 888887777651
Q ss_pred --CCH---------------------------------------------------------------------------
Q 005598 540 --GTP--------------------------------------------------------------------------- 542 (689)
Q Consensus 540 --~~~--------------------------------------------------------------------------- 542 (689)
.+.
T Consensus 433 ~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e 512 (717)
T KOG1048|consen 433 SDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSE 512 (717)
T ss_pred ccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCce
Confidence 011
Q ss_pred ---------------------HHHHHHHHHHHhhhhch-----HHHHHH-HHhCcHHHHHHhc-CCChHHHHHHHHHHHH
Q 005598 543 ---------------------RGKKDAATALFNLSIYH-----ENKARI-VQAGAVKHLVDLM-DPAAGMVDKAVAVLAN 594 (689)
Q Consensus 543 ---------------------~v~~~Al~aL~nLs~~~-----~n~~~l-v~~G~v~~Lv~LL-~~~~~v~e~Al~~L~n 594 (689)
.+.++++.||-||+... ..+..+ .++.+.+.|+++| ..+..++..++++|.|
T Consensus 513 ~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrN 592 (717)
T KOG1048|consen 513 WLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRN 592 (717)
T ss_pred eeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhh
Confidence 12225677777776632 233444 5677889999999 5678899999999999
Q ss_pred HhCCchhHHHHHhcCcHHHHHHHhccC------CHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCC-HHH
Q 005598 595 LATIPDGRVAIGQENGIPVLVEVVELG------SARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGT-PRA 667 (689)
Q Consensus 595 La~~~e~r~~i~~~g~v~~Lv~lL~s~------s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~-~~v 667 (689)
|+.+...++.|. .++++.|+..|... ++++...++.+|+++...+..+...+.+.+++++|+.|..+.. +++
T Consensus 593 ls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~ 671 (717)
T KOG1048|consen 593 LSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKE 671 (717)
T ss_pred hccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHH
Confidence 999999998888 77899999999642 3688888999999999999999999999999999999998864 689
Q ss_pred HHHHHHHHHHhhcCcC
Q 005598 668 KEKAQALLSYFRNQRH 683 (689)
Q Consensus 668 r~~A~~lL~~L~~~~~ 683 (689)
-+.|..+|..|+.+.+
T Consensus 672 ~kaAs~vL~~lW~y~e 687 (717)
T KOG1048|consen 672 FKAASSVLDVLWQYKE 687 (717)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988764
No 18
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.46 E-value=8.8e-12 Score=128.52 Aligned_cols=191 Identities=22% Similarity=0.279 Sum_probs=169.6
Q ss_pred hhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHH
Q 005598 403 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 481 (689)
Q Consensus 403 ~~~V~~Lv~~L~-s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~ 481 (689)
.+.++.|+.+|+ +.++.+|..++..+.+.+. .+.++..+.+.|+++.+..+|..+++.+++.|+.+|.|++.+.+++.
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~ 89 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQE 89 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHH
Confidence 467899999999 4689999999999999877 56899999999999999999999999999999999999999988888
Q ss_pred HHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhch
Q 005598 482 AIANANAIEPLIHVLQTG--SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH 559 (689)
Q Consensus 482 ~i~~~g~l~~Lv~lL~s~--~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~ 559 (689)
.+-. +++.+++.+.+. +.+++..++.+|.+|+..++++..+.. .++.++.+|..++..++..++++|.||+.++
T Consensus 90 ~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np 165 (254)
T PF04826_consen 90 QIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLVNLSENP 165 (254)
T ss_pred HHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHHHhccCH
Confidence 7643 577777655443 578899999999999998888777754 7999999999999999999999999999999
Q ss_pred HHHHHHHHhCcHHHHHHhcC--CChHHHHHHHHHHHHHhCC
Q 005598 560 ENKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLATI 598 (689)
Q Consensus 560 ~n~~~lv~~G~v~~Lv~LL~--~~~~v~e~Al~~L~nLa~~ 598 (689)
.+...++.++++..++.+++ ...++...++.++.||..+
T Consensus 166 ~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 166 DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 99999999999999999993 4678889999999999764
No 19
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.5e-12 Score=128.62 Aligned_cols=159 Identities=24% Similarity=0.318 Sum_probs=113.1
Q ss_pred hhHHHHHHH--HHHHhhCCCCCCHHHHHHHHHhcCCCcHHHHH-HHHHHHHHHHHHHHH----------HhhhChH----
Q 005598 4 EQTSSLIKE--AIRDQVDGVAPSSEILVKVAESLSLRSNQEIL-IEAVALEKLKENAEQ----------AEKAGEA---- 66 (689)
Q Consensus 4 ~~~~~~i~~--~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~-~e~~~l~~~~~~~~~----------~~~~~~~---- 66 (689)
|-|-...++ .++++.-..+.+.....+.|+++.+....+.. .+...+..-.+.... .+.....
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~El~~yl~slie~~~~~~~s~~~~N~~sde~~k 175 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELELHSYLESLIEGDRERELSEWQENGESDEHLK 175 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhhHHHHHHHHhccchhhHHHHHHHcCCChHHHh
Confidence 345555555 77887777788888889999988887665553 122222222221100 0010000
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccccccccccCceecCCCccccHHHHHHHHhcCC
Q 005598 67 -----------EFMDQMISLVTRMHDRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGL 135 (689)
Q Consensus 67 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~ 135 (689)
.....+.++..++.+. ....++|+.++|.|++++|+|||+.|+|.||+|..|.++++.-+
T Consensus 176 ~~q~~~~~~~d~~~kel~elf~~v~e~---------rk~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvg 246 (284)
T KOG4642|consen 176 TMQVPIEQDHDHTTKELSELFSKVDEK---------RKKREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVG 246 (284)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHH---------hccccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhc
Confidence 1222222333332221 24667999999999999999999999999999999999999877
Q ss_pred CCCCCCCCcCCCCCCCccHHHHHHHHHHHHHcCCCC
Q 005598 136 FVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVKL 171 (689)
Q Consensus 136 ~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~~~~ 171 (689)
+.+|+|+.+|+..+++||++|+..|..|.+.|.|..
T Consensus 247 hfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w~~ 282 (284)
T KOG4642|consen 247 HFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEWAD 282 (284)
T ss_pred cCCchhcccCCHHhhccchHHHHHHHHHHHhccccc
Confidence 889999999999999999999999999999999864
No 20
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.42 E-value=1.7e-12 Score=151.61 Aligned_cols=223 Identities=22% Similarity=0.261 Sum_probs=193.3
Q ss_pred HHHHHHHHHHHHhhccCcccHHHHHhc-CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-C-ccHHHHHHcCCHHHHHH-
Q 005598 419 DTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHSSETKIQENAVTALLNLSIN-D-NNKSAIANANAIEPLIH- 494 (689)
Q Consensus 419 ~~q~~Al~~L~~La~~s~~nr~~i~~~-g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~-~-~~k~~i~~~g~l~~Lv~- 494 (689)
.+++.|+-+|.+|++++..|+..+... |++..+|..|.+...+++.....+|.||++. + +.+..+.+.|-+..|+.
T Consensus 366 aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~ 445 (2195)
T KOG2122|consen 366 ALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAAC 445 (2195)
T ss_pred HHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHH
Confidence 456778889999999999998887654 9999999999998889999999999999976 3 44667778899999886
Q ss_pred HHcCCCHHHHHHHHHHHHhccc-CchhHHHHHhh-CChHHHHHhhcCC----CHHHHHHHHHHHHhhhh----chHHHHH
Q 005598 495 VLQTGSPEARENAAATLFSLSV-IEDNKIKIGRS-GAIGPLVDLLGNG----TPRGKKDAATALFNLSI----YHENKAR 564 (689)
Q Consensus 495 lL~s~~~~~~~~Aa~aL~nLs~-~~~~k~~I~~~-g~I~~Lv~LL~~~----~~~v~~~Al~aL~nLs~----~~~n~~~ 564 (689)
.|...........+.+||||+. ..+||..|+.- |++..||.+|.-. ...+...|-++|.|.+. +..-|+.
T Consensus 446 al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQI 525 (2195)
T KOG2122|consen 446 ALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQI 525 (2195)
T ss_pred HHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHH
Confidence 4555666778889999999987 57899999886 9999999999854 46788889999999876 4566788
Q ss_pred HHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCH
Q 005598 565 IVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 641 (689)
Q Consensus 565 lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~ 641 (689)
+.+.+++..|+..| +..-.+|..+|++||||.. +++.++.+++.|+|+.|..++.+.+..+.+-++.+|.||..+.+
T Consensus 526 LR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 526 LRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred HHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 88999999999999 5667889999999999976 88999999999999999999999999999999999999998875
No 21
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.42 E-value=1.4e-11 Score=126.99 Aligned_cols=194 Identities=20% Similarity=0.207 Sum_probs=168.8
Q ss_pred HhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhH
Q 005598 443 ANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK 521 (689)
Q Consensus 443 ~~~g~I~~Lv~lL~s-~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k 521 (689)
.+.+.++.|+.+|+. .++.+++.++.++.+.+..+.++..+.+.|+++.+..+|.++++.++..|+.+|.|++...+++
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 455778999999985 6899999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhCChHHHHHhhcCC--CHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCC
Q 005598 522 IKIGRSGAIGPLVDLLGNG--TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI 598 (689)
Q Consensus 522 ~~I~~~g~I~~Lv~LL~~~--~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~ 598 (689)
..|-. .++.+++.+.+. +..++..++++|.||+..++....+. +.++.++.+| ..+..+...++++|.||+.+
T Consensus 89 ~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 89 EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence 88743 466666655543 67889999999999999877766553 4789999999 56778889999999999999
Q ss_pred chhHHHHHhcCcHHHHHHHhccC-CHHHHHHHHHHHHHHhhCC
Q 005598 599 PDGRVAIGQENGIPVLVEVVELG-SARGKENAAAALLQLCTNS 640 (689)
Q Consensus 599 ~e~r~~i~~~g~v~~Lv~lL~s~-s~~~~e~Av~aL~~L~~~~ 640 (689)
+.....++..+++..++.++... +......++.+..|+..+-
T Consensus 165 p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 165 PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENI 207 (254)
T ss_pred HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999875 6778888999999986653
No 22
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.40 E-value=1.3e-10 Score=131.97 Aligned_cols=277 Identities=17% Similarity=0.169 Sum_probs=222.0
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 005598 403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 482 (689)
Q Consensus 403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~ 482 (689)
....+.|...|.++++.++..++..|..++.++......+.+.+.++.++.+|..++..+...|+.+|.+|+..+.....
T Consensus 76 ~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~ 155 (503)
T PF10508_consen 76 PQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQ 155 (503)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHH
Confidence 56778899999999999999999999999987766666777889999999999999999999999999999988877778
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccC-chhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHH
Q 005598 483 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN 561 (689)
Q Consensus 483 i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~-~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n 561 (689)
+...+.+..|..++...+..+|..+..++.+++.. ++....+...|+++.++..|++.+.-++.+++.+|..|+..+.+
T Consensus 156 l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g 235 (503)
T PF10508_consen 156 LFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHG 235 (503)
T ss_pred HhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhH
Confidence 88888899999999888888999999999999764 55566666779999999999999999999999999999999999
Q ss_pred HHHHHHhCcHHHHHHhc-C--CCh---H-HHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHH
Q 005598 562 KARIVQAGAVKHLVDLM-D--PAA---G-MVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALL 634 (689)
Q Consensus 562 ~~~lv~~G~v~~Lv~LL-~--~~~---~-v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~ 634 (689)
...+.+.|+++.|..++ + .++ . +.-..+...++++......-.-.-...+..|..++.+.++..+..|..+|.
T Consensus 236 ~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg 315 (503)
T PF10508_consen 236 LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLG 315 (503)
T ss_pred HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence 99999999999999998 2 122 1 223445677777774222111111234566677778899999999999999
Q ss_pred HHhhCCHhhHHHH-HhC-CC----hHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 005598 635 QLCTNSSRFCSMV-LQE-GA----VPPLVALSQSGTPRAKEKAQALLSYFRN 680 (689)
Q Consensus 635 ~L~~~~~~~~~~l-v~~-g~----i~~L~~LL~~~~~~vr~~A~~lL~~L~~ 680 (689)
.++.... ....+ .+. +. +..+.....++...+|-++..+|..+-.
T Consensus 316 ~igst~~-G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~ 366 (503)
T PF10508_consen 316 QIGSTVE-GKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILT 366 (503)
T ss_pred HHhCCHH-HHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 9997665 44444 433 33 4444445666777899999998888843
No 23
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=7.6e-12 Score=136.48 Aligned_cols=131 Identities=21% Similarity=0.262 Sum_probs=100.1
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHH---HHHhcCCCcHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHH
Q 005598 7 SSLIKEAIRDQVDGVAPSSEILVK---VAESLSLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMHDRL 83 (689)
Q Consensus 7 ~~~i~~~~~~~~~~~~~~~~~~~~---ia~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (689)
.+|||+++.| ++.++.+.+.+ |.++.-+.++.++.+ +..+....|+.+..+..+++
T Consensus 788 s~FveaVA~D---~rsf~~~~F~rA~~I~~~k~L~s~~~IE~-l~~f~nr~E~~r~~ea~EeE----------------- 846 (929)
T COG5113 788 SKFVEAVASD---KRSFDIDFFRRALRICENKYLISESQIEE-LRSFINRLEKVRVIEAVEEE----------------- 846 (929)
T ss_pred HHHHHHHHcc---cccccHHHHHHHHHHHhccccCCHHHHHH-HHHHHHHHHHHHHHHhhhhh-----------------
Confidence 4688888887 56688888874 455666777776633 44444434433222222222
Q ss_pred HHHhhhccCCCCCCCCccccccccccccCceecC-CCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCCccHHHHHHHHH
Q 005598 84 VMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIAN 162 (689)
Q Consensus 84 ~~~~~~~~~~~~~~p~~f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~ 162 (689)
+..+||++|..|++..+|+|||++| +|.+.||+.|..|+..+ .++|+.|.||+.++.+||..||+.|-.
T Consensus 847 ---------D~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahllsd-~tDPFNRmPLtlddVtpn~eLrekIn~ 916 (929)
T COG5113 847 ---------DMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLSD-GTDPFNRMPLTLDDVTPNAELREKINR 916 (929)
T ss_pred ---------hccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhcC-CCCccccCCCchhhcCCCHHHHHHHHH
Confidence 3445999999999999999999986 79999999999999976 779999999999999999999999999
Q ss_pred HHHHcC
Q 005598 163 WCELNN 168 (689)
Q Consensus 163 ~~~~~~ 168 (689)
|.+..+
T Consensus 917 f~k~k~ 922 (929)
T COG5113 917 FYKCKG 922 (929)
T ss_pred HHhccc
Confidence 976544
No 24
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.7e-11 Score=142.20 Aligned_cols=130 Identities=28% Similarity=0.408 Sum_probs=95.6
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHhc---CCCcHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHH
Q 005598 8 SLIKEAIRDQVDGVAPSSEILVKVAESL---SLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMHDRLV 84 (689)
Q Consensus 8 ~~i~~~~~~~~~~~~~~~~~~~~ia~~~---~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (689)
.|.++++.| ++.++.+.|......+ .+++..++ .+...|....++....+...++++.
T Consensus 805 ~F~~avA~D---~RSys~~lF~~a~~~~~k~~l~~~~~I-e~~s~la~~~~~~~~~~~~eee~l~--------------- 865 (943)
T KOG2042|consen 805 SFVEAVAKD---GRSYSEELFNHAISILRKRILKSSRQI-EEFSELAERVEATASIDAEEEEELG--------------- 865 (943)
T ss_pred hHHHHHhcc---ccccCHHHHhhhHHHHHHhhcccHHHH-HHHHHHHHHHHHHHHHHHHHHHHhc---------------
Confidence 466667766 5557777777555444 44444444 2355555544443222211122222
Q ss_pred HHhhhccCCCCCCCCccccccccccccCceecC-CCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCCccHHHHHHHHHH
Q 005598 85 MIKQSQICSPVPIPSDFCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANW 163 (689)
Q Consensus 85 ~~~~~~~~~~~~~p~~f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~ 163 (689)
++|++|..||+..+|+|||++| +|++.||+.|++|+..+ .++|+||.+|+.+++.||.+||..|+.|
T Consensus 866 -----------dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~-~tdPFNR~pLt~d~v~pn~eLK~kI~~~ 933 (943)
T KOG2042|consen 866 -----------DVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSD-CTDPFNREPLTEDMVSPNEELKAKIRCW 933 (943)
T ss_pred -----------cCchhhhCccccccCCCCccCCcccccccHHHHHHHHhcC-CCCccccccCchhhcCCCHHHHHHHHHH
Confidence 3899999999999999999998 89999999999999976 7799999999999999999999999999
Q ss_pred HHHcC
Q 005598 164 CELNN 168 (689)
Q Consensus 164 ~~~~~ 168 (689)
..++.
T Consensus 934 ~~ek~ 938 (943)
T KOG2042|consen 934 IKEKR 938 (943)
T ss_pred HHHhh
Confidence 87654
No 25
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=8.6e-10 Score=117.92 Aligned_cols=275 Identities=15% Similarity=0.201 Sum_probs=204.6
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 005598 403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 482 (689)
Q Consensus 403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~ 482 (689)
+..|..||+.|.-++.+........|..|+.-. +|+..+.+.|.|..|+.++...+++++...+..|.||+.+...+..
T Consensus 303 kniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~-eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~K 381 (791)
T KOG1222|consen 303 KNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFD-ENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPK 381 (791)
T ss_pred HhHHHHHHHHHcccchHHHHHHHHHHHHhhhhc-cchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHH
Confidence 567888999999888888888888999998754 8999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHHhhhhchHH
Q 005598 483 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHEN 561 (689)
Q Consensus 483 i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~~~n 561 (689)
++..|.+|.|+.+|.+... ...|+..|..++.+++.+..+.-..+|+.+++.+-.+ ..++..+.+..-.|||.+..|
T Consensus 382 Mv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRN 459 (791)
T KOG1222|consen 382 MVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRN 459 (791)
T ss_pred HhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcccc
Confidence 9999999999999976442 3357788999999999999998889999999887665 455555555555688888887
Q ss_pred HHHHHHhCcHHHHHHhc-C--------------------------------------CChHHHHHHHHHHHHHhCCch--
Q 005598 562 KARIVQAGAVKHLVDLM-D--------------------------------------PAAGMVDKAVAVLANLATIPD-- 600 (689)
Q Consensus 562 ~~~lv~~G~v~~Lv~LL-~--------------------------------------~~~~v~e~Al~~L~nLa~~~e-- 600 (689)
.+.+++..++..|++.- . .+....-.++++|+||....-
T Consensus 460 aQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw 539 (791)
T KOG1222|consen 460 AQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDW 539 (791)
T ss_pred ceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCH
Confidence 77777665665555421 0 111223357778887744211
Q ss_pred ------------------------------------------hHHHHHhcCcHHHHHHHhcc--CCHHHHHHHHHHHHHH
Q 005598 601 ------------------------------------------GRVAIGQENGIPVLVEVVEL--GSARGKENAAAALLQL 636 (689)
Q Consensus 601 ------------------------------------------~r~~i~~~g~v~~Lv~lL~s--~s~~~~e~Av~aL~~L 636 (689)
....+..++.|+.|+++|+. .+++..-..+.+...+
T Consensus 540 ~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~ 619 (791)
T KOG1222|consen 540 AKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQF 619 (791)
T ss_pred HHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 11122345677778888765 2444455556666666
Q ss_pred hhCCHhhHHHHHh-CCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 005598 637 CTNSSRFCSMVLQ-EGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 681 (689)
Q Consensus 637 ~~~~~~~~~~lv~-~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~~ 681 (689)
..+.. .+..+++ ...-..|+.|+...+..+|+.+--+|-.+..+
T Consensus 620 l~He~-tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~ 664 (791)
T KOG1222|consen 620 LKHEL-TRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEH 664 (791)
T ss_pred HHHHH-HHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 66633 4444554 44555799999999999999888777777654
No 26
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.16 E-value=4.6e-09 Score=119.45 Aligned_cols=273 Identities=15% Similarity=0.125 Sum_probs=212.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc-HHHHHHcC
Q 005598 409 LVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNN-KSAIANAN 487 (689)
Q Consensus 409 Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~-k~~i~~~g 487 (689)
++..|.+.+.+.-..++..|..+.... ..... ..+..+.|...|.++++.|+..+++.|.++..+... ...+.+.+
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~-~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~ 119 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSAL-SPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNE 119 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhcc-CHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence 778888777776677777787776632 22222 457889999999999999999999999999876555 44556779
Q ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhc-hHHHHHHH
Q 005598 488 AIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKARIV 566 (689)
Q Consensus 488 ~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~-~~n~~~lv 566 (689)
.++.++..|.+++..+...|+.+|..|+.....-..+...+.+..|..++...+..++..+..++.+++.. ++....+.
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~ 199 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVV 199 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999999999999999999999887777788888899999999988888899999999999874 55666777
Q ss_pred HhCcHHHHHHhcCCC-hHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccC--CH-H---HHHHHHHHHHHHhhC
Q 005598 567 QAGAVKHLVDLMDPA-AGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG--SA-R---GKENAAAALLQLCTN 639 (689)
Q Consensus 567 ~~G~v~~Lv~LL~~~-~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~--s~-~---~~e~Av~aL~~L~~~ 639 (689)
..|+++.++..|+.+ .-++..|+.+|..|+..+.+.+.+.+.|+++.|+.++... ++ . ..-..+....+++..
T Consensus 200 ~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~ 279 (503)
T PF10508_consen 200 NSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV 279 (503)
T ss_pred hccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc
Confidence 799999999999544 4456789999999999999999999999999999999653 33 1 111222444556654
Q ss_pred CHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCcCCC
Q 005598 640 SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGN 685 (689)
Q Consensus 640 ~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~~~~~~ 685 (689)
.+...... -...+..|..++.+.++..+..|...|..+....+|+
T Consensus 280 ~~~~v~~~-~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~ 324 (503)
T PF10508_consen 280 SPQEVLEL-YPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGK 324 (503)
T ss_pred ChHHHHHH-HHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHH
Confidence 43211111 1245556777788888999999999999888766654
No 27
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.15 E-value=2.7e-09 Score=113.10 Aligned_cols=279 Identities=16% Similarity=0.169 Sum_probs=210.7
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcC----CC---HHHHHHHHHHHHHhhc
Q 005598 403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS----SE---TKIQENAVTALLNLSI 475 (689)
Q Consensus 403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s----~~---~~v~~~Al~aL~nLs~ 475 (689)
.+.+..|.+...|.+.++..+..+.|.++++.+.++|..|.+.|+-..++.+|+. ++ .+....+...|.|-..
T Consensus 86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 3566666677778888899999999999999999999999999997777777754 22 3556667778888765
Q ss_pred C-CccHHHHHHcCCHHHHHHHHcCC----------------------------------------------CHHHHHHHH
Q 005598 476 N-DNNKSAIANANAIEPLIHVLQTG----------------------------------------------SPEARENAA 508 (689)
Q Consensus 476 ~-~~~k~~i~~~g~l~~Lv~lL~s~----------------------------------------------~~~~~~~Aa 508 (689)
+ +..+..+++.|+++.|..++.-+ .++.++...
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 4 56678888888888776554311 112233334
Q ss_pred HHHHhcccCchhHHHHHhhCChHHHHHhhcC-CC-------HHHHHHHHHHHHhhhhchHHHHHHHHhC-cHHHHHHhc-
Q 005598 509 ATLFSLSVIEDNKIKIGRSGAIGPLVDLLGN-GT-------PRGKKDAATALFNLSIYHENKARIVQAG-AVKHLVDLM- 578 (689)
Q Consensus 509 ~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~-~~-------~~v~~~Al~aL~nLs~~~~n~~~lv~~G-~v~~Lv~LL- 578 (689)
.++...+.++..+..+++.|.+..++++++. .+ ....+.++....-|...++.-+++...+ .+..++..+
T Consensus 246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~ 325 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFR 325 (604)
T ss_pred HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhc
Confidence 4555556666667777788888888888875 11 2233344555555555566666666655 777888888
Q ss_pred CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhcc-----CCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCh
Q 005598 579 DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL-----GSARGKENAAAALLQLCTNSSRFCSMVLQEGAV 653 (689)
Q Consensus 579 ~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s-----~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i 653 (689)
+.+......+.-+++|+++..+....+++.+.+..|+..|.. ++-+.++.++.+|.|+.---+ ++..+...|+.
T Consensus 326 S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~-nka~~~~aGvt 404 (604)
T KOG4500|consen 326 SDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS-NKAHFAPAGVT 404 (604)
T ss_pred CCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC-chhhccccchH
Confidence 556677788888999999999999999999999999999853 567889999999999987665 77888999999
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHhhcCc
Q 005598 654 PPLVALSQSGTPRAKEKAQALLSYFRNQR 682 (689)
Q Consensus 654 ~~L~~LL~~~~~~vr~~A~~lL~~L~~~~ 682 (689)
+.++..+....|++.-+-...|++++...
T Consensus 405 eaIL~~lk~~~ppv~fkllgTlrM~~d~q 433 (604)
T KOG4500|consen 405 EAILLQLKLASPPVTFKLLGTLRMIRDSQ 433 (604)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHhch
Confidence 99999999999999988888888887643
No 28
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.13 E-value=3e-11 Score=89.25 Aligned_cols=39 Identities=31% Similarity=0.777 Sum_probs=31.5
Q ss_pred cccccccccCceecCCCccccHHHHHHHHhcCC---CCCCCC
Q 005598 103 CPLSLELMTDPVIVASGQTYERAFIKKWIDLGL---FVCPKT 141 (689)
Q Consensus 103 CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~---~~cP~t 141 (689)
||||+++|+|||+++|||+||+.||.+||+... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999998643 359986
No 29
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.11 E-value=1.4e-09 Score=98.24 Aligned_cols=116 Identities=30% Similarity=0.415 Sum_probs=105.7
Q ss_pred HHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-CccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCch-
Q 005598 442 IANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED- 519 (689)
Q Consensus 442 i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~-~~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~- 519 (689)
+.+.|+++.|+.+|.+.+..++..++++|.+++.+ +..+..+.+.|+++.|+.+|.++++.++..++++|.+|+....
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 56789999999999999999999999999999977 7788888889999999999999999999999999999998764
Q ss_pred hHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhh
Q 005598 520 NKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 557 (689)
Q Consensus 520 ~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~ 557 (689)
....+...|+++.|+++|.+.+..++..++++|.+|+.
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 45566778999999999999999999999999999863
No 30
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.11 E-value=3.7e-11 Score=116.40 Aligned_cols=61 Identities=30% Similarity=0.573 Sum_probs=53.3
Q ss_pred CCCCCCccccccccccccCceecCCCccccHHHHHHHHhc---------------CCCCCCCCCCcCCCCCCCccH
Q 005598 94 PVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL---------------GLFVCPKTRQTLAHTTLIPNY 154 (689)
Q Consensus 94 ~~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~---------------~~~~cP~t~~~l~~~~l~pn~ 154 (689)
.++..++|.||||++.++|||+++|||.||+.||.+|+.. +...||+|+.+++...++|.+
T Consensus 12 ~~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 12 LVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred eccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 3456778999999999999999999999999999999852 234699999999999999985
No 31
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.08 E-value=3.1e-08 Score=108.76 Aligned_cols=273 Identities=15% Similarity=0.108 Sum_probs=201.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCccHHHHH
Q 005598 406 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-ETKIQENAVTALLNLSINDNNKSAIA 484 (689)
Q Consensus 406 V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~-~~~v~~~Al~aL~nLs~~~~~k~~i~ 484 (689)
...++.+|..++..++..|+..|..+...+..+.......-.+..|...|.+. +...+..++.+|..|...+..|..+.
T Consensus 103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~ 182 (429)
T cd00256 103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFV 182 (429)
T ss_pred hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHH
Confidence 45566688888888999999999988765543321111111334555666553 46777888899999988999999999
Q ss_pred HcCCHHHHHHHHcCC--CHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHHhhhhch--
Q 005598 485 NANAIEPLIHVLQTG--SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYH-- 559 (689)
Q Consensus 485 ~~g~l~~Lv~lL~s~--~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~~-- 559 (689)
+.++++.|+.+|+.. +.+++.+++-++|-|+..++........+.|+.|+++++.. ...+.+.++.+|.||....
T Consensus 183 ~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~ 262 (429)
T cd00256 183 LADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVD 262 (429)
T ss_pred HccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccc
Confidence 999999999999863 56899999999999999888777666679999999999976 5789999999999998843
Q ss_pred -----HHHHHHHHhCcHHHHHHhcC---CChHHHHHHHH-------HHHHHhCCc------------------------h
Q 005598 560 -----ENKARIVQAGAVKHLVDLMD---PAAGMVDKAVA-------VLANLATIP------------------------D 600 (689)
Q Consensus 560 -----~n~~~lv~~G~v~~Lv~LL~---~~~~v~e~Al~-------~L~nLa~~~------------------------e 600 (689)
.....|+..|+.+.+-.+.. .+.++.+..-. .+..+++.. +
T Consensus 263 ~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~E 342 (429)
T cd00256 263 REVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRE 342 (429)
T ss_pred cchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHH
Confidence 23456777787765555542 34444432111 111222111 1
Q ss_pred hHHHHHhcC--cHHHHHHHhc-cCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHH
Q 005598 601 GRVAIGQEN--GIPVLVEVVE-LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 677 (689)
Q Consensus 601 ~r~~i~~~g--~v~~Lv~lL~-s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~ 677 (689)
+...+-+.+ .+..|+++|. +.++.+...||.=|..+++..|..+..+-+.|+=..++.|+.+.++++|..|..++..
T Consensus 343 N~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQk 422 (429)
T cd00256 343 NADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQK 422 (429)
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 222333333 4788999995 5678888899999999999999888888889999999999999999999999998876
Q ss_pred h
Q 005598 678 F 678 (689)
Q Consensus 678 L 678 (689)
|
T Consensus 423 l 423 (429)
T cd00256 423 L 423 (429)
T ss_pred H
Confidence 5
No 32
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.08 E-value=3.5e-09 Score=95.59 Aligned_cols=116 Identities=28% Similarity=0.363 Sum_probs=107.3
Q ss_pred HHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCC-chhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCH
Q 005598 564 RIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI-PDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 641 (689)
Q Consensus 564 ~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~-~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~ 641 (689)
.+++.|+++.|+++| +.+..++..++.+|.+++.. ++.+..+.+.++++.++++|...++.++..|+++|++++...+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 467899999999999 66678999999999999997 7788888999999999999999999999999999999999988
Q ss_pred hhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 005598 642 RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 679 (689)
Q Consensus 642 ~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~ 679 (689)
.....+++.|+++.|..++..++..+++.|.++|..|.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 78888889999999999999999999999999998875
No 33
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=3.4e-08 Score=112.02 Aligned_cols=257 Identities=18% Similarity=0.145 Sum_probs=201.3
Q ss_pred hhHHHHHHHHhcCC-CHHHHHHHHHHHHH-hhccCcccHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHhhc-CCc
Q 005598 403 ETQVRKLVEDLKST-SLDTQREATAELRL-LAKHNMDNRMVIANCGAINILVDMLHSS-ETKIQENAVTALLNLSI-NDN 478 (689)
Q Consensus 403 ~~~V~~Lv~~L~s~-~~~~q~~Al~~L~~-La~~s~~nr~~i~~~g~I~~Lv~lL~s~-~~~v~~~Al~aL~nLs~-~~~ 478 (689)
..-++.|+.-|+.. ++..|.+|+..|+. |...+++.-..|--.-++|.|+.+|++. +.+++..|+++|.+|+. -+.
T Consensus 166 sSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~ 245 (1051)
T KOG0168|consen 166 SSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR 245 (1051)
T ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence 34788899999865 88999999998874 4555554444444457899999999874 68999999999999984 477
Q ss_pred cHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhh
Q 005598 479 NKSAIANANAIEPLIHVLQ-TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 557 (689)
Q Consensus 479 ~k~~i~~~g~l~~Lv~lL~-s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~ 557 (689)
....+++.++||.|+.-|. -...++.++++.+|..|+.... ..|.+.|++...+.+|.-.+..+++.|+.+..|.|.
T Consensus 246 S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 246 SSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred hhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7888899999999996554 5679999999999999986433 456688999999999998899999999999999988
Q ss_pred c--hHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC----CchhHHHHHhcCcHHHHHHHhccC----CHHHH
Q 005598 558 Y--HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT----IPDGRVAIGQENGIPVLVEVVELG----SARGK 626 (689)
Q Consensus 558 ~--~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~----~~e~r~~i~~~g~v~~Lv~lL~s~----s~~~~ 626 (689)
. ++.-..+ ..++|.|..+| ..+...++.++-++..++. .++--+.+...+.|....+||.-. +..+.
T Consensus 324 si~sd~f~~v--~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~ 401 (1051)
T KOG0168|consen 324 SIRSDEFHFV--MEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTY 401 (1051)
T ss_pred cCCCccchHH--HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccch
Confidence 3 3333333 34789999999 5667778877777777765 233457788899999999988532 33445
Q ss_pred HHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcC
Q 005598 627 ENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG 663 (689)
Q Consensus 627 e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~ 663 (689)
...+..|..+|.+++.....+.+.++...|..+++..
T Consensus 402 ~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 402 TGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred hHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhcc
Confidence 5567778888999898888899999999999988753
No 34
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.04 E-value=2.1e-10 Score=124.04 Aligned_cols=69 Identities=17% Similarity=0.402 Sum_probs=63.4
Q ss_pred CCCccccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCCccHHHHHHHHHHHHH
Q 005598 97 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCEL 166 (689)
Q Consensus 97 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~ 166 (689)
+...|.||||+++|.+||+++|||+||..||..|+... ..||.|+.++....+.+|..|.++|+.|...
T Consensus 23 Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~-~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~ 91 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQ-PKCPLCRAEDQESKLRSNWLVSEIVESFKNL 91 (397)
T ss_pred cccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCC-CCCCCCCCccccccCccchHHHHHHHHHHHh
Confidence 56789999999999999999999999999999999865 4699999999888999999999999999753
No 35
>PRK09687 putative lyase; Provisional
Probab=99.03 E-value=2e-08 Score=105.65 Aligned_cols=222 Identities=18% Similarity=0.108 Sum_probs=147.9
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHh-hcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 005598 404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDM-LHSSETKIQENAVTALLNLSINDNNKSA 482 (689)
Q Consensus 404 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~l-L~s~~~~v~~~Al~aL~nLs~~~~~k~~ 482 (689)
..+..+.+++++.++.++..|++.|..|.... .. ...+++.|..+ ++..++.|+..|+.+|+++.......
T Consensus 54 ~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~-~~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-- 125 (280)
T PRK09687 54 DVFRLAIELCSSKNPIERDIGADILSQLGMAK-RC-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-- 125 (280)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-cc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc--
Confidence 45566666677777777777777777764421 11 12356666665 45567777778888887774322110
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHH
Q 005598 483 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 562 (689)
Q Consensus 483 i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~ 562 (689)
...++..+...+.+.+..+|..|+.+|..+. ...+++.|+.+|.+.+..++..|+.+|..+....
T Consensus 126 --~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~----------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~--- 190 (280)
T PRK09687 126 --SPKIVEQSQITAFDKSTNVRFAVAFALSVIN----------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN--- 190 (280)
T ss_pred --chHHHHHHHHHhhCCCHHHHHHHHHHHhccC----------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC---
Confidence 1123445666666777778888777776542 3357788888888888888888888888773211
Q ss_pred HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCH
Q 005598 563 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 641 (689)
Q Consensus 563 ~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~ 641 (689)
..+++.|+.+| +.+..+...|+..|+.+-. ..+++.|++.|..+. ++..|+.+|..+..
T Consensus 191 -----~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~----------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~--- 250 (280)
T PRK09687 191 -----PDIREAFVAMLQDKNEEIRIEAIIGLALRKD----------KRVLSVLIKELKKGT--VGDLIIEAAGELGD--- 250 (280)
T ss_pred -----HHHHHHHHHHhcCCChHHHHHHHHHHHccCC----------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC---
Confidence 24566777777 5667777788888876432 247888888887765 44556666665543
Q ss_pred hhHHHHHhCCChHHHHHhhh-cCCHHHHHHHHHHHH
Q 005598 642 RFCSMVLQEGAVPPLVALSQ-SGTPRAKEKAQALLS 676 (689)
Q Consensus 642 ~~~~~lv~~g~i~~L~~LL~-~~~~~vr~~A~~lL~ 676 (689)
..+++.|..++. ..+++++++|.+.|+
T Consensus 251 --------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 251 --------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred --------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 246889999997 778999999999876
No 36
>PRK09687 putative lyase; Provisional
Probab=98.95 E-value=5.8e-08 Score=102.19 Aligned_cols=223 Identities=13% Similarity=0.052 Sum_probs=167.6
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 005598 404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 483 (689)
Q Consensus 404 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i 483 (689)
..+..|+..|.+.+..++..|+..|..+.. ..+++.+..++.+.++.++..|+++|+.|......
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---- 87 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---- 87 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence 467889999999999999999999887643 34677888999999999999999999998543221
Q ss_pred HHcCCHHHHHHH-HcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHH
Q 005598 484 ANANAIEPLIHV-LQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 562 (689)
Q Consensus 484 ~~~g~l~~Lv~l-L~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~ 562 (689)
....++.|..+ ++++++.++..|+.+|..+....... ...++..+..++.+.+..++..++.+|..+.
T Consensus 88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~------ 156 (280)
T PRK09687 88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN------ 156 (280)
T ss_pred -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC------
Confidence 22456777766 67788999999999999985422110 1134666778888889999999999997653
Q ss_pred HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCH
Q 005598 563 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 641 (689)
Q Consensus 563 ~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~ 641 (689)
...+++.|+.+| +++..+...|+.+|+.+.... ..+++.|+.+|...++.++..|+.+|..+-.
T Consensus 157 ----~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~--------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--- 221 (280)
T PRK09687 157 ----DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN--------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD--- 221 (280)
T ss_pred ----CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC---
Confidence 234788999999 677788899999999883311 1467889999999999999999999987432
Q ss_pred hhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHH
Q 005598 642 RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 677 (689)
Q Consensus 642 ~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~ 677 (689)
..+++.|+..++.+.. +..|...|..
T Consensus 222 --------~~av~~Li~~L~~~~~--~~~a~~ALg~ 247 (280)
T PRK09687 222 --------KRVLSVLIKELKKGTV--GDLIIEAAGE 247 (280)
T ss_pred --------hhHHHHHHHHHcCCch--HHHHHHHHHh
Confidence 2467778888777663 3344444433
No 37
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=1.3e-08 Score=109.17 Aligned_cols=198 Identities=23% Similarity=0.305 Sum_probs=165.3
Q ss_pred CHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhc
Q 005598 459 ETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG 538 (689)
Q Consensus 459 ~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~ 538 (689)
...+...|+..|.||+.+...-..+...+.+..|++.|...+.++.......|..|+..++++..+.+.|.++.|++++.
T Consensus 276 QeqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp 355 (791)
T KOG1222|consen 276 QEQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFP 355 (791)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcC
Confidence 34567789999999998877777888889999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhcCCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHh
Q 005598 539 NGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVV 618 (689)
Q Consensus 539 ~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL 618 (689)
..+++.+...+..|+||+.....+.+|+..|.+|.|..+|+++. -..-|+.+|.+++.....+..+....+|+.+.+.+
T Consensus 356 ~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~-~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v 434 (791)
T KOG1222|consen 356 IQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDT-KHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDV 434 (791)
T ss_pred CCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcc-cchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999995432 13458889999999888898899999999999988
Q ss_pred ccCCH-HHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHH
Q 005598 619 ELGSA-RGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVA 658 (689)
Q Consensus 619 ~s~s~-~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~ 658 (689)
..+.. ++...-+..-.|||.+.. +.+.+.+..++..|+.
T Consensus 435 ~~~~~~~vdl~lia~ciNl~lnkR-NaQlvceGqgL~~LM~ 474 (791)
T KOG1222|consen 435 LSGTGSEVDLALIALCINLCLNKR-NAQLVCEGQGLDLLME 474 (791)
T ss_pred HhcCCceecHHHHHHHHHHHhccc-cceEEecCcchHHHHH
Confidence 76543 333333334467777654 5566666556665554
No 38
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.93 E-value=6.9e-08 Score=102.61 Aligned_cols=279 Identities=15% Similarity=0.114 Sum_probs=208.6
Q ss_pred ccchhhHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcC-CC-------HHHHHHHHHH
Q 005598 399 LSGIETQVRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SE-------TKIQENAVTA 469 (689)
Q Consensus 399 l~~~~~~V~~Lv~~L~s~-~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s-~~-------~~v~~~Al~a 469 (689)
+......+..+++.+.+. +++........+...+. ++..+-.+++.|.+.-++.+++. .+ -.....++..
T Consensus 218 ~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~ae-nd~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el 296 (604)
T KOG4500|consen 218 FCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAE-NDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAEL 296 (604)
T ss_pred hhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhc-CcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhH
Confidence 334456677777777753 44444455555555554 66788889999999999999875 21 1223344444
Q ss_pred HHHhhcCCccHHHHHHcC-CHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhc-----CCCHH
Q 005598 470 LLNLSINDNNKSAIANAN-AIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG-----NGTPR 543 (689)
Q Consensus 470 L~nLs~~~~~k~~i~~~g-~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~-----~~~~~ 543 (689)
..-|..+++....+...+ +++.++.-+.+.+..+...++-+|.|++..+++...+++.|++..|+++|- +++.+
T Consensus 297 ~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~ 376 (604)
T KOG4500|consen 297 DVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVE 376 (604)
T ss_pred hhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccch
Confidence 444455666666666555 888899999999999999999999999999999999999999999999985 35788
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCch-hHHHHHhc-CcHHHHHHHhcc
Q 005598 544 GKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPD-GRVAIGQE-NGIPVLVEVVEL 620 (689)
Q Consensus 544 v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e-~r~~i~~~-g~v~~Lv~lL~s 620 (689)
.+.+++.||.||.....|+..++.+|+++.++.++ ...++++-.-++.|+.+....+ ...++.+. ..+..|+..-++
T Consensus 377 ~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks 456 (604)
T KOG4500|consen 377 RQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKS 456 (604)
T ss_pred hHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhC
Confidence 99999999999999999999999999999999998 4567788889999998876544 33344433 347788888777
Q ss_pred CCHH-HHHHHHHHHHHHhhCC--HhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 005598 621 GSAR-GKENAAAALLQLCTNS--SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 678 (689)
Q Consensus 621 ~s~~-~~e~Av~aL~~L~~~~--~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L 678 (689)
.+-. +.-..-..|..+.+++ .+....+.+.|++..++..+...+-..+..|.-+|-.+
T Consensus 457 ~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~ 517 (604)
T KOG4500|consen 457 PDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLST 517 (604)
T ss_pred CccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHH
Confidence 6544 6667777888888874 34566677889999998888877766666655544443
No 39
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.90 E-value=5.6e-08 Score=104.11 Aligned_cols=230 Identities=17% Similarity=0.173 Sum_probs=163.9
Q ss_pred cHHHHHHhhcC--CCHHHHHHHHHHHHHhhcC-CccHHHHHH------cCCHHHHHHHHcCCCHHHHHHHHHHHHhcccC
Q 005598 447 AINILVDMLHS--SETKIQENAVTALLNLSIN-DNNKSAIAN------ANAIEPLIHVLQTGSPEARENAAATLFSLSVI 517 (689)
Q Consensus 447 ~I~~Lv~lL~s--~~~~v~~~Al~aL~nLs~~-~~~k~~i~~------~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~ 517 (689)
....++.+|+. .+.++....+..+..+..+ +.....+.. ...+.++++++.+++..++..|+..|..|...
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 35556666654 5788999999999998655 444444443 13688899999999999999999999999876
Q ss_pred chhHHHHHhhCChHHHHHhhcCC----CHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc------CCCh--HHH
Q 005598 518 EDNKIKIGRSGAIGPLVDLLGNG----TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM------DPAA--GMV 585 (689)
Q Consensus 518 ~~~k~~I~~~g~I~~Lv~LL~~~----~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL------~~~~--~v~ 585 (689)
...+......+.++.++++|++. +......|+.+|.+|...++.|..+.+.|+++.|+.+| .... .+.
T Consensus 136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~ 215 (312)
T PF03224_consen 136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQ 215 (312)
T ss_dssp TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHH
T ss_pred CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHH
Confidence 55544443356778888888753 34566889999999999999999999999999999998 2222 344
Q ss_pred HHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHhhCCHh-hHHHHHhCCChHHHHHhhhcC
Q 005598 586 DKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAALLQLCTNSSR-FCSMVLQEGAVPPLVALSQSG 663 (689)
Q Consensus 586 e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s-~s~~~~e~Av~aL~~L~~~~~~-~~~~lv~~g~i~~L~~LL~~~ 663 (689)
-.++-+++.|+.+++....+.+.+.++.|+++++. ..+++.+.++.+|.||+...++ ....++..|+++.|-.|....
T Consensus 216 Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk 295 (312)
T PF03224_consen 216 YQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERK 295 (312)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS-
T ss_pred HHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCC
Confidence 58999999999999999999999999999999975 5789999999999999988764 667777777666666665543
Q ss_pred --CHHHHHHHHHHHH
Q 005598 664 --TPRAKEKAQALLS 676 (689)
Q Consensus 664 --~~~vr~~A~~lL~ 676 (689)
++.+.+-...+-.
T Consensus 296 ~~Dedl~edl~~L~e 310 (312)
T PF03224_consen 296 WSDEDLTEDLEFLKE 310 (312)
T ss_dssp -SSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 5777766555443
No 40
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.86 E-value=2.3e-07 Score=99.39 Aligned_cols=219 Identities=19% Similarity=0.169 Sum_probs=162.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhc------CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHH
Q 005598 408 KLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC------GAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 481 (689)
Q Consensus 408 ~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~------g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~ 481 (689)
.|++.+ +.+.+.....+..+..+...++.....+... .....|+.++.++|..++..|+.+|..|......+.
T Consensus 62 ~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~ 140 (312)
T PF03224_consen 62 NLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRS 140 (312)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--
T ss_pred HHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccc
Confidence 444444 5677888889999999988887666666552 257788889999999999999999999975543333
Q ss_pred HHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhh------cCC-CHHHHHHHHH
Q 005598 482 AIANANAIEPLIHVLQT----GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLL------GNG-TPRGKKDAAT 550 (689)
Q Consensus 482 ~i~~~g~l~~Lv~lL~s----~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL------~~~-~~~v~~~Al~ 550 (689)
.-...+.++.++..|.+ .+.+.+..++.+|.+|...+.+|..+.+.++++.|+++| ... ..+....++.
T Consensus 141 ~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll 220 (312)
T PF03224_consen 141 EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALL 220 (312)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHH
Confidence 33225566777777765 345577899999999999999999999999999999999 222 5788999999
Q ss_pred HHHhhhhchHHHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCch--hHHHHHhcCcHHHHHHHhcc--CCHH
Q 005598 551 ALFNLSIYHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPD--GRVAIGQENGIPVLVEVVEL--GSAR 624 (689)
Q Consensus 551 aL~nLs~~~~n~~~lv~~G~v~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e--~r~~i~~~g~v~~Lv~lL~s--~s~~ 624 (689)
+++.|+.+++....+...+.++.|++++ .....++.-++++|.||..... ....++..++++.+-.+... .+++
T Consensus 221 ~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Ded 300 (312)
T PF03224_consen 221 CLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDED 300 (312)
T ss_dssp HHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHH
T ss_pred HHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHH
Confidence 9999999999999999999999999999 5677899999999999999666 67788887777776666654 3555
Q ss_pred HHH
Q 005598 625 GKE 627 (689)
Q Consensus 625 ~~e 627 (689)
..+
T Consensus 301 l~e 303 (312)
T PF03224_consen 301 LTE 303 (312)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 41
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.82 E-value=1.6e-09 Score=85.26 Aligned_cols=44 Identities=30% Similarity=0.587 Sum_probs=31.4
Q ss_pred CccccccccccccCcee-cCCCccccHHHHHHHHhcC-CCCCCCCC
Q 005598 99 SDFCCPLSLELMTDPVI-VASGQTYERAFIKKWIDLG-LFVCPKTR 142 (689)
Q Consensus 99 ~~f~CpI~~~lm~dPV~-~~~G~ty~r~~I~~~l~~~-~~~cP~t~ 142 (689)
-.|+||||+..|+|||+ ..|||+|||++|.+|+..+ ...||+.|
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 45899999999999998 4899999999999999543 34599965
No 42
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.77 E-value=4.4e-09 Score=76.56 Aligned_cols=38 Identities=29% Similarity=0.748 Sum_probs=33.2
Q ss_pred cccccccccCc-eecCCCccccHHHHHHHHhcCCCCCCCC
Q 005598 103 CPLSLELMTDP-VIVASGQTYERAFIKKWIDLGLFVCPKT 141 (689)
Q Consensus 103 CpI~~~lm~dP-V~~~~G~ty~r~~I~~~l~~~~~~cP~t 141 (689)
||||++.+.|| |+++|||+||+.||++|++. ...||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 57899999999999999998 5779987
No 43
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=3.3e-06 Score=95.75 Aligned_cols=258 Identities=18% Similarity=0.241 Sum_probs=198.8
Q ss_pred hhHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCc-
Q 005598 403 ETQVRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS--SETKIQENAVTALLNLSINDN- 478 (689)
Q Consensus 403 ~~~V~~Lv~~L~s~-~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s--~~~~v~~~Al~aL~nLs~~~~- 478 (689)
..+|+.|+..+.+. -.+.++.|+..|..+++ ..|..++. -|++.|+..|+. .|+++...++.+++++..+++
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga-~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGA-QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHH-cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 36899999998854 56778999999999988 56776654 567888888876 478999999999999865442
Q ss_pred ------cH----------HHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHhccc--CchhHHHHHhh-CChHHHHHhhc
Q 005598 479 ------NK----------SAIA-NANAIEPLIHVLQTGSPEARENAAATLFSLSV--IEDNKIKIGRS-GAIGPLVDLLG 538 (689)
Q Consensus 479 ------~k----------~~i~-~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~--~~~~k~~I~~~-g~I~~Lv~LL~ 538 (689)
.+ +.++ ..+.|..|+..+..-+-.+|..++..|.+|-. ..+.+..+... -+|..|+++|.
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~ 176 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR 176 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence 12 2233 34889999999999999999999999999865 34556666554 88999999999
Q ss_pred CCCHHHHHHHHHHHHhhhhchHHHHHHHH-hCcHHHHHHhcCC-----ChHHHHHHHHHHHHHhC-CchhHHHHHhcCcH
Q 005598 539 NGTPRGKKDAATALFNLSIYHENKARIVQ-AGAVKHLVDLMDP-----AAGMVDKAVAVLANLAT-IPDGRVAIGQENGI 611 (689)
Q Consensus 539 ~~~~~v~~~Al~aL~nLs~~~~n~~~lv~-~G~v~~Lv~LL~~-----~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~v 611 (689)
+....++..++..|..|+....+.+++|. .+++..|+.++.. ..-+++.|+.+|-||-. +..++..+.+.+.|
T Consensus 177 DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i 256 (970)
T KOG0946|consen 177 DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYI 256 (970)
T ss_pred hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccH
Confidence 99999999999999999998888888777 8999999999932 23578999999999988 56678888888889
Q ss_pred HHHHHHhcc---CCH-------H---HHHHHHHHHHHHhhCCH------hhHHHHHhCCChHHHHHhhhcCC
Q 005598 612 PVLVEVVEL---GSA-------R---GKENAAAALLQLCTNSS------RFCSMVLQEGAVPPLVALSQSGT 664 (689)
Q Consensus 612 ~~Lv~lL~s---~s~-------~---~~e~Av~aL~~L~~~~~------~~~~~lv~~g~i~~L~~LL~~~~ 664 (689)
|.|.++|.- ++. . ....|..++..+..-+. .++..+.+.+++..|+.++.+..
T Consensus 257 ~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~ 328 (970)
T KOG0946|consen 257 PRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPG 328 (970)
T ss_pred HHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCC
Confidence 999988842 221 1 12334555555554321 24456678899999999887763
No 44
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.72 E-value=1.7e-06 Score=105.42 Aligned_cols=232 Identities=21% Similarity=0.176 Sum_probs=125.4
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc----
Q 005598 403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDN---- 478 (689)
Q Consensus 403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~---- 478 (689)
...+..|+..|.+.++.++..|+..|..+.. .++++.|+.+|..++..|+..|+.+|..+.....
T Consensus 620 ~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~ 688 (897)
T PRK13800 620 APSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPA 688 (897)
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHH
Confidence 4567899999999999999999999987642 3478888899988889999988888877632110
Q ss_pred -----------cHHHHHH------cCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCC
Q 005598 479 -----------NKSAIAN------ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGT 541 (689)
Q Consensus 479 -----------~k~~i~~------~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~ 541 (689)
.|...++ .+....|+..|++.++.+|..|+.+|..+ +..+.|..++.+.+
T Consensus 689 L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~-------------~~~~~l~~~l~D~~ 755 (897)
T PRK13800 689 LRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSV-------------DDVESVAGAATDEN 755 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcc-------------cCcHHHHHHhcCCC
Confidence 0111110 01223344444444444444444444432 12233444444444
Q ss_pred HHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCch---------------hHHHH
Q 005598 542 PRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPD---------------GRVAI 605 (689)
Q Consensus 542 ~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e---------------~r~~i 605 (689)
..++..++.+|..+... ....++.|+.++ +++..+...|+..|..+..... .|...
T Consensus 756 ~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~A 827 (897)
T PRK13800 756 REVRIAVAKGLATLGAG--------GAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGA 827 (897)
T ss_pred HHHHHHHHHHHHHhccc--------cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHH
Confidence 45555444444443221 011245555555 4445555555555554432110 01100
Q ss_pred H-------hcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHH
Q 005598 606 G-------QENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 676 (689)
Q Consensus 606 ~-------~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~ 676 (689)
+ ....++.|+.+|...+..++..|+.+|..+ ..++ ...+.|...+...+..+|+.|...|.
T Consensus 828 a~aL~~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~-~~~~---------~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 828 ARALAGAAADVAVPALVEALTDPHLDVRKAAVLALTRW-PGDP---------AARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHHhccccchHHHHHHHhcCCCHHHHHHHHHHHhcc-CCCH---------HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 0 112346666666666666666666666554 1111 13445556666666667766666654
No 45
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.61 E-value=5.7e-06 Score=88.56 Aligned_cols=269 Identities=14% Similarity=0.113 Sum_probs=196.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccCcccH---HHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCccHHH
Q 005598 407 RKLVEDLKSTSLDTQREATAELRLLAKHNMDNR---MVIANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNNKSA 482 (689)
Q Consensus 407 ~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr---~~i~~~g~I~~Lv~lL~s-~~~~v~~~Al~aL~nLs~~~~~k~~ 482 (689)
...+.+|..++.-....+.+.|..++.-....- ..-.. ...|..++++ .+.+....++.+|-.+...++.|-.
T Consensus 117 ~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~---~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~ 193 (442)
T KOG2759|consen 117 LSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVY---KGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYA 193 (442)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHH---HHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhhe
Confidence 456777777887777777888888876432221 11111 2223334444 5666777888899888888999999
Q ss_pred HHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHHhhhhch
Q 005598 483 IANANAIEPLIHVLQT--GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYH 559 (689)
Q Consensus 483 i~~~g~l~~Lv~lL~s--~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~~ 559 (689)
+...+++..++.+|.+ .+..++.+...++|-|+.++...+.+...+.|+.|.+++++. ...+.+-++.++.|+....
T Consensus 194 ~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~ 273 (442)
T KOG2759|consen 194 FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKG 273 (442)
T ss_pred eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999843 468899999999999999988887775569999999999977 4788999999999998865
Q ss_pred -------HHHHHHHHhCcHHHHHHhcC---CChHHHHHHH-------HHHHHHhCCchh---------------------
Q 005598 560 -------ENKARIVQAGAVKHLVDLMD---PAAGMVDKAV-------AVLANLATIPDG--------------------- 601 (689)
Q Consensus 560 -------~n~~~lv~~G~v~~Lv~LL~---~~~~v~e~Al-------~~L~nLa~~~e~--------------------- 601 (689)
.....|+..++.+.+-.|.. ++.++++..- .....|++..+.
T Consensus 274 ~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW 353 (442)
T KOG2759|consen 274 PDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFW 353 (442)
T ss_pred chhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchH
Confidence 34456666666665544441 3444433221 112223332222
Q ss_pred ---HHHHHhc--CcHHHHHHHhccC-CHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHH
Q 005598 602 ---RVAIGQE--NGIPVLVEVVELG-SARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALL 675 (689)
Q Consensus 602 ---r~~i~~~--g~v~~Lv~lL~s~-s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL 675 (689)
...+-+. ..+..|+++|+.. +|..--.|+.=+....+..|+.+..+.+.||=+.+++|+.+.++++|-.|..++
T Consensus 354 ~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlav 433 (442)
T KOG2759|consen 354 RENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAV 433 (442)
T ss_pred HHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHH
Confidence 2222233 3578999999865 588888999999999999999999999999999999999999999999998877
Q ss_pred HHh
Q 005598 676 SYF 678 (689)
Q Consensus 676 ~~L 678 (689)
..|
T Consensus 434 Q~l 436 (442)
T KOG2759|consen 434 QKL 436 (442)
T ss_pred HHH
Confidence 655
No 46
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.61 E-value=2e-08 Score=74.27 Aligned_cols=36 Identities=25% Similarity=0.728 Sum_probs=23.4
Q ss_pred cccccccccC----ceecCCCccccHHHHHHHHhcC---CCCCC
Q 005598 103 CPLSLELMTD----PVIVASGQTYERAFIKKWIDLG---LFVCP 139 (689)
Q Consensus 103 CpI~~~lm~d----PV~~~~G~ty~r~~I~~~l~~~---~~~cP 139 (689)
||||.+ |.+ |++++|||+||+.||++++..+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 999 9999999999999999999864 23477
No 47
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.59 E-value=5.9e-06 Score=100.65 Aligned_cols=203 Identities=22% Similarity=0.222 Sum_probs=115.0
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc--------------CcccHHHHHh------cCcHHHHHHhhcCCCHHH
Q 005598 403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKH--------------NMDNRMVIAN------CGAINILVDMLHSSETKI 462 (689)
Q Consensus 403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~--------------s~~nr~~i~~------~g~I~~Lv~lL~s~~~~v 462 (689)
...++.|+..|++.++.++..|+..|..+... ++..|...++ .+....|+..|...++.+
T Consensus 651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~V 730 (897)
T PRK13800 651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRV 730 (897)
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHH
Confidence 55678999999999999999998888776421 1111211111 022334444555555555
Q ss_pred HHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCH
Q 005598 463 QENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTP 542 (689)
Q Consensus 463 ~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~ 542 (689)
+..|+.+|..+ +..+.|+.+|.+.+..+|..++.+|..+... ....++.|..++++.++
T Consensus 731 R~~Av~aL~~~-------------~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~ 789 (897)
T PRK13800 731 RIEAVRALVSV-------------DDVESVAGAATDENREVRIAVAKGLATLGAG--------GAPAGDAVRALTGDPDP 789 (897)
T ss_pred HHHHHHHHhcc-------------cCcHHHHHHhcCCCHHHHHHHHHHHHHhccc--------cchhHHHHHHHhcCCCH
Confidence 55555555433 2334455566666666666666666655321 01224445555555555
Q ss_pred HHHHHHHHHHHhhhhchHH---------------HHHH-------HHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCc
Q 005598 543 RGKKDAATALFNLSIYHEN---------------KARI-------VQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIP 599 (689)
Q Consensus 543 ~v~~~Al~aL~nLs~~~~n---------------~~~l-------v~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~ 599 (689)
.++..|+.+|..+...... |... -....++.|+.+| +++..+...|+.+|..+...+
T Consensus 790 ~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~ 869 (897)
T PRK13800 790 LVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAADVAVPALVEALTDPHLDVRKAAVLALTRWPGDP 869 (897)
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccccchHHHHHHHhcCCCHHHHHHHHHHHhccCCCH
Confidence 5555555555443221100 0000 0123557777777 566777777777777752211
Q ss_pred hhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHH
Q 005598 600 DGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQ 635 (689)
Q Consensus 600 e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~ 635 (689)
...+.|...+...+..++..|+.+|..
T Consensus 870 ---------~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 870 ---------AARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred ---------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 246778888888899999999988853
No 48
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.59 E-value=5.4e-07 Score=82.19 Aligned_cols=121 Identities=21% Similarity=0.274 Sum_probs=108.6
Q ss_pred hHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 005598 404 TQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 482 (689)
Q Consensus 404 ~~V~~Lv~~L~-s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~ 482 (689)
+.++.||...+ ..+.+.+.+.+..|.+++. +|.|...+.+.+++..++..|...+..+.+.++..|+|+|.++.++..
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~ 94 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKF 94 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHH
Confidence 68889998887 4688899999999999999 679999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCch-hHHHHH
Q 005598 483 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED-NKIKIG 525 (689)
Q Consensus 483 i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~-~k~~I~ 525 (689)
|.+.++++.++..|.++...+...|+.++..|+.... .+..+.
T Consensus 95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell 138 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELL 138 (173)
T ss_pred HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhc
Confidence 9999999999999999999999999999999876443 344443
No 49
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=2.6e-08 Score=98.37 Aligned_cols=57 Identities=25% Similarity=0.565 Sum_probs=51.1
Q ss_pred CccccccccccccCceecCCCccccHHHHHHHHhcCC--CCCCCCCCcCCCCCCCccHH
Q 005598 99 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGL--FVCPKTRQTLAHTTLIPNYT 155 (689)
Q Consensus 99 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~--~~cP~t~~~l~~~~l~pn~~ 155 (689)
..|-|-||+++-+|||++.|||-||=.||.+|++... ..||+|+..++.+.++|-+.
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 3699999999999999999999999999999998533 34899999999999999763
No 50
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=4.7e-06 Score=88.02 Aligned_cols=182 Identities=23% Similarity=0.199 Sum_probs=152.4
Q ss_pred CCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhh-chHHHHHHHHhCcHHHHHHh
Q 005598 499 GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDL 577 (689)
Q Consensus 499 ~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~~~n~~~lv~~G~v~~Lv~L 577 (689)
.+.+-++.|..-|..++.+-++...+...|++..++.++.+.+..++..|+++|...+. ++..+..+++.|+.+.|+.+
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 35777888888888888888888889899999999999999999999999999999988 45677889999999999999
Q ss_pred c--CCChHHHHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHhcc--CCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCC
Q 005598 578 M--DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL--GSARGKENAAAALLQLCTNSSRFCSMVLQEGA 652 (689)
Q Consensus 578 L--~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~v~~Lv~lL~s--~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~ 652 (689)
| +....+..+|+.++..|.+ ++.+...+...++...|...|.+ .+...+..|+..|..|..........+-..+.
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 9 3455667899999999998 56788999999999999999988 67888999999999999888766665556777
Q ss_pred hHHHHHhhhcCCHHHHHHHHH-HHHHhhc
Q 005598 653 VPPLVALSQSGTPRAKEKAQA-LLSYFRN 680 (689)
Q Consensus 653 i~~L~~LL~~~~~~vr~~A~~-lL~~L~~ 680 (689)
...+..+..+....+++.|.. +|..+..
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 777777888888788887766 4444443
No 51
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=4.9e-06 Score=87.90 Aligned_cols=183 Identities=19% Similarity=0.183 Sum_probs=151.4
Q ss_pred CCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhccc-CchhHHHHHhhCChHHHHHh
Q 005598 458 SETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDL 536 (689)
Q Consensus 458 ~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~-~~~~k~~I~~~g~I~~Lv~L 536 (689)
.+.+-++.|+.-|.-++.+-+|...+...|++.+++..|++.+..+|..|+++|...+. ++..+..+.+.|+++.|+..
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 35666778788887777777888889999999999999999999999999999999988 56788889999999999999
Q ss_pred hcCC-CHHHHHHHHHHHHhhhhc-hHHHHHHHHhCcHHHHHHhc-C--CChHHHHHHHHHHHHHhCCc-hhHHHHHhcCc
Q 005598 537 LGNG-TPRGKKDAATALFNLSIY-HENKARIVQAGAVKHLVDLM-D--PAAGMVDKAVAVLANLATIP-DGRVAIGQENG 610 (689)
Q Consensus 537 L~~~-~~~v~~~Al~aL~nLs~~-~~n~~~lv~~G~v~~Lv~LL-~--~~~~v~e~Al~~L~nLa~~~-e~r~~i~~~g~ 610 (689)
|... +..++..|+.|+.+|-.+ ......+...++...|..++ . .+...+..++.++..|.... ..+..+...+.
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 9865 567889999999999984 56788899999999999999 3 45667789999999988744 34444455666
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhhCC
Q 005598 611 IPVLVEVVELGSARGKENAAAALLQLCTNS 640 (689)
Q Consensus 611 v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~ 640 (689)
...++.+....+..+.+.|+.++..+...-
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~ 284 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLLSEL 284 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence 667777777788999999999988876543
No 52
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.53 E-value=6.5e-08 Score=71.11 Aligned_cols=39 Identities=36% Similarity=0.941 Sum_probs=35.7
Q ss_pred cccccccccCce-ecCCCccccHHHHHHHHh-cCCCCCCCC
Q 005598 103 CPLSLELMTDPV-IVASGQTYERAFIKKWID-LGLFVCPKT 141 (689)
Q Consensus 103 CpI~~~lm~dPV-~~~~G~ty~r~~I~~~l~-~~~~~cP~t 141 (689)
||||++.+.+|+ +++|||+||+.||.+|+. .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 899999999999999999 555669987
No 53
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.52 E-value=1.6e-07 Score=95.24 Aligned_cols=49 Identities=18% Similarity=0.378 Sum_probs=41.6
Q ss_pred CCCccccccccccccCc--------eecCCCccccHHHHHHHHhcCCCCCCCCCCcCC
Q 005598 97 IPSDFCCPLSLELMTDP--------VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLA 146 (689)
Q Consensus 97 ~p~~f~CpI~~~lm~dP--------V~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~ 146 (689)
...+..||||++.+.+| |+++|||+||+.||.+|+... .+||+||.++.
T Consensus 171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~-~tCPlCR~~~~ 227 (238)
T PHA02929 171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEK-NTCPVCRTPFI 227 (238)
T ss_pred CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcC-CCCCCCCCEee
Confidence 45678999999987764 567899999999999999864 67999999875
No 54
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.51 E-value=3.2e-08 Score=78.20 Aligned_cols=58 Identities=16% Similarity=0.348 Sum_probs=33.8
Q ss_pred ccccccccccccCcee-cCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCCccHHHHHHH
Q 005598 100 DFCCPLSLELMTDPVI-VASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALI 160 (689)
Q Consensus 100 ~f~CpI~~~lm~dPV~-~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~pn~~l~~~i 160 (689)
-+.|++|.++|++||. ..|.|+||+.||.+.+.. .||+|+.|-...++.-|+.|-++|
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence 3789999999999996 589999999999886654 399999999999999999998876
No 55
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.51 E-value=4.8e-08 Score=100.25 Aligned_cols=65 Identities=18% Similarity=0.366 Sum_probs=59.5
Q ss_pred CccccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCCccHHHHHHHHHHH
Q 005598 99 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWC 164 (689)
Q Consensus 99 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~ 164 (689)
+-++|-||.+.|+-||++|||||||--||..||... ..||.|..+++...|.-|+-|-.+|+.|.
T Consensus 22 ~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~-p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~ 86 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYK-PQCPTCCVTVTESDLRNNRILDEIVKSLN 86 (442)
T ss_pred HHHHHhHHHHHhcCceeccccchHHHHHHHHHhccC-CCCCceecccchhhhhhhhHHHHHHHHHH
Confidence 458999999999999999999999999999999876 55999999999999999999988888763
No 56
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.48 E-value=9.8e-06 Score=92.79 Aligned_cols=253 Identities=19% Similarity=0.197 Sum_probs=171.5
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-CccHHH
Q 005598 404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSA 482 (689)
Q Consensus 404 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~-~~~k~~ 482 (689)
..+..+.+.|.++++.++..|++.|.+++. ++.. ...++.+..+|.++++.|+..|+.++..+... ++ .
T Consensus 79 l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~~-----~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~---~ 148 (526)
T PF01602_consen 79 LIINSLQKDLNSPNPYIRGLALRTLSNIRT--PEMA-----EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD---L 148 (526)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHHH-----HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC---C
T ss_pred HHHHHHHHhhcCCCHHHHHHHHhhhhhhcc--cchh-----hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH---H
Confidence 467888899999999999999999999873 2221 13578888999999999999999999998632 22 1
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHH
Q 005598 483 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 562 (689)
Q Consensus 483 i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~ 562 (689)
+... .++.+..+|.+.++.++..|+.++..+...++.... .-...+..|.+++...++-.+...+.+|..++......
T Consensus 149 ~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~-~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~ 226 (526)
T PF01602_consen 149 VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKS-LIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPED 226 (526)
T ss_dssp HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTT-HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHH
T ss_pred HHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhhh-hHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhh
Confidence 2222 588899999999999999999999998111111111 11244566666667788888888999988887744322
Q ss_pred HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCH
Q 005598 563 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 641 (689)
Q Consensus 563 ~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~ 641 (689)
..- ...++.+..++ +....++-.|+.++..+..... .-..+++.|+++|.+.++.++..++..|..++...+
T Consensus 227 ~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~ 299 (526)
T PF01602_consen 227 ADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP 299 (526)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH
T ss_pred hhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccc
Confidence 210 45666677666 4455666777777777766554 333466788888887788888888888888887662
Q ss_pred hhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 005598 642 RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 680 (689)
Q Consensus 642 ~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~ 680 (689)
..+ . .....+..+..+.+..+|.+|..+|..+.+
T Consensus 300 ---~~v-~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~ 333 (526)
T PF01602_consen 300 ---PAV-F-NQSLILFFLLYDDDPSIRKKALDLLYKLAN 333 (526)
T ss_dssp ---HHH-G-THHHHHHHHHCSSSHHHHHHHHHHHHHH--
T ss_pred ---hhh-h-hhhhhhheecCCCChhHHHHHHHHHhhccc
Confidence 122 2 222223333336667788887777766654
No 57
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.47 E-value=1.1e-07 Score=73.08 Aligned_cols=47 Identities=23% Similarity=0.446 Sum_probs=40.5
Q ss_pred CccccccccccccCceecCCCcc-ccHHHHHHHHhcCCCCCCCCCCcCC
Q 005598 99 SDFCCPLSLELMTDPVIVASGQT-YERAFIKKWIDLGLFVCPKTRQTLA 146 (689)
Q Consensus 99 ~~f~CpI~~~lm~dPV~~~~G~t-y~r~~I~~~l~~~~~~cP~t~~~l~ 146 (689)
+++.|+||++-+.+++++||||. ||..|+.+|+.. ...||+||++++
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhc
Confidence 46789999999999999999999 999999999994 467999999875
No 58
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=7.3e-08 Score=91.20 Aligned_cols=51 Identities=24% Similarity=0.551 Sum_probs=44.6
Q ss_pred cccccccccccC--ceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCCc
Q 005598 101 FCCPLSLELMTD--PVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIP 152 (689)
Q Consensus 101 f~CpI~~~lm~d--PV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~p 152 (689)
|.||||++-+.. ||.+.|||.||+.||++.+..+ .+||.|++.++++++.+
T Consensus 132 ~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~-~~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 132 YKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNT-NKCPTCRKKITHKQFHR 184 (187)
T ss_pred cCCCceecchhhccccccccchhHHHHHHHHHHHhC-CCCCCcccccchhhhee
Confidence 999999988765 5558999999999999999976 56999999999887765
No 59
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=8.3e-05 Score=76.88 Aligned_cols=271 Identities=17% Similarity=0.181 Sum_probs=186.6
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHh-cCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 005598 404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIAN-CGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 482 (689)
Q Consensus 404 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~-~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~ 482 (689)
.....+++++.+.+|.++..|+..+..|+.. ..+..... .-.++.|.+++....+ .+.|+.+|.|++.++..+..
T Consensus 3 s~l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ 78 (353)
T KOG2973|consen 3 SELVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKK 78 (353)
T ss_pred hHHHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHH
Confidence 4567899999999999999999999988875 33433332 3568888888876555 67899999999999888888
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHh-------hCChHHHHHhhcCC-CH-HHHHHHHHHHH
Q 005598 483 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGR-------SGAIGPLVDLLGNG-TP-RGKKDAATALF 553 (689)
Q Consensus 483 i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~-------~g~I~~Lv~LL~~~-~~-~v~~~Al~aL~ 553 (689)
+.+. .++.+++++-++.......++.+|.||+..++....+.. .|.+...+.....+ +. .-....+..+.
T Consensus 79 ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~ 157 (353)
T KOG2973|consen 79 LLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFA 157 (353)
T ss_pred HHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHH
Confidence 8777 888888988877666777888999999997775444321 24444444444443 22 23345666888
Q ss_pred hhhhchHHHHHHHHhCcHHH--HHHhcCCChHHH-HHHHHHHHHHhCCchhHHHHHhcC--cHHHHH-------------
Q 005598 554 NLSIYHENKARIVQAGAVKH--LVDLMDPAAGMV-DKAVAVLANLATIPDGRVAIGQEN--GIPVLV------------- 615 (689)
Q Consensus 554 nLs~~~~n~~~lv~~G~v~~--Lv~LL~~~~~v~-e~Al~~L~nLa~~~e~r~~i~~~g--~v~~Lv------------- 615 (689)
||+.....|..+.....++. |+.+-+.+..+. ...+++|.|.|........++..+ .+|.|+
T Consensus 158 nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEd 237 (353)
T KOG2973|consen 158 NLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEED 237 (353)
T ss_pred HHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHH
Confidence 99999999888877663322 222223233333 357889999988777666665432 233322
Q ss_pred --------HHhc-----cCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcC-CHHHHHHHHHHHHHhhc
Q 005598 616 --------EVVE-----LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLSYFRN 680 (689)
Q Consensus 616 --------~lL~-----s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~-~~~vr~~A~~lL~~L~~ 680 (689)
++|- ..++.++..-+.+|..||.... .++.+..-|+.+.|..+-... ++.+++.+-.+..++-+
T Consensus 238 m~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~-GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 238 MAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA-GREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred HhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH-hHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 2221 2467788889999999998765 666776666666666654433 57888888888888766
No 60
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=5.8e-06 Score=94.40 Aligned_cols=213 Identities=16% Similarity=0.163 Sum_probs=171.7
Q ss_pred hhhHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCCcc
Q 005598 402 IETQVRKLVEDLKS-TSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML-HSSETKIQENAVTALLNLSINDNN 479 (689)
Q Consensus 402 ~~~~V~~Lv~~L~s-~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL-~s~~~~v~~~Al~aL~nLs~~~~~ 479 (689)
++.+|+.|+.+|+. .+.+++..|+++|..|+..-|.....+++.++||.|+.-| .-...+|.|+++.+|..|+...
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H-- 286 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH-- 286 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--
Confidence 46799999999996 5899999999999999998888889999999999998755 4467889999999999997432
Q ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccC---chhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhh
Q 005598 480 KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI---EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLS 556 (689)
Q Consensus 480 k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~---~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs 556 (689)
-..+.+.|++-..+..|.--+..++..|+++..|+|.. ++... + ..++|.|..+|...+.+..+.++.++..++
T Consensus 287 ~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~-v--~ealPlL~~lLs~~D~k~ies~~ic~~ri~ 363 (1051)
T KOG0168|consen 287 PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHF-V--MEALPLLTPLLSYQDKKPIESVCICLTRIA 363 (1051)
T ss_pred cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchH-H--HHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 35678899999999999877888999999999998762 22222 2 257899999999999999999988888886
Q ss_pred h----chHHHHHHHHhCcHHHHHHhcCCC-----hHHHHHHHHHHHHHhCC-chhHHHHHhcCcHHHHHHHhc
Q 005598 557 I----YHENKARIVQAGAVKHLVDLMDPA-----AGMVDKAVAVLANLATI-PDGRVAIGQENGIPVLVEVVE 619 (689)
Q Consensus 557 ~----~~~n~~~lv~~G~v~~Lv~LL~~~-----~~v~e~Al~~L~nLa~~-~e~r~~i~~~g~v~~Lv~lL~ 619 (689)
. .++--+++...|.+.....||.-. ..+....+..|..+|.. +.....+...++...|..+|.
T Consensus 364 d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~ 436 (1051)
T KOG0168|consen 364 DGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQ 436 (1051)
T ss_pred HhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHh
Confidence 6 233446788899999999988322 23445667778888874 777888888888888888875
No 61
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.5e-07 Score=99.28 Aligned_cols=71 Identities=25% Similarity=0.583 Sum_probs=61.1
Q ss_pred CCCccccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCCccHHHHHHHHHHHHHcCCC
Q 005598 97 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVK 170 (689)
Q Consensus 97 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~~~ 170 (689)
..+++.||||++.|++|++++|||+||+.||..++. ....||.|+. ... .+.+|..+.++++.+...+...
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~-~~~~n~~l~~~~~~~~~~~~~~ 80 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR-NLRPNVLLANLVERLRQLRLSR 80 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-chh-ccCccHHHHHHHHHHHhcCCcc
Confidence 457899999999999999999999999999999999 5567999996 322 7889999999999988766543
No 62
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.43 E-value=4.7e-05 Score=84.01 Aligned_cols=216 Identities=13% Similarity=0.129 Sum_probs=160.1
Q ss_pred hhHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCcccHHHHHhc-----CcHHHHHHhhcCCCHHHHHHHHHHHHHhhc-
Q 005598 403 ETQVRKLVEDLKS-TSLDTQREATAELRLLAKHNMDNRMVIANC-----GAINILVDMLHSSETKIQENAVTALLNLSI- 475 (689)
Q Consensus 403 ~~~V~~Lv~~L~s-~~~~~q~~Al~~L~~La~~s~~nr~~i~~~-----g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~- 475 (689)
...+..++..|+. .+.+.....+..+..+...++..-..|.+. +....++.+|..++.-++..++.+|..|..
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhc
Confidence 4677788888874 566777778888888888765544555543 466778889988888899999999988853
Q ss_pred CCccHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCC--CHHHHHHHHHHH
Q 005598 476 NDNNKSAIANANAIEPLIHVLQTG-SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG--TPRGKKDAATAL 552 (689)
Q Consensus 476 ~~~~k~~i~~~g~l~~Lv~lL~s~-~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~--~~~v~~~Al~aL 552 (689)
+..........-.+..|...|+++ +...+..++.+|..|...+.+|..+.+.++++.|+.+|+.. ..+....++.++
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l 211 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI 211 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence 222211111111334556666654 36778888899999999999999998888999999999864 468899999999
Q ss_pred HhhhhchHHHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCch-------hHHHHHhcCcHHHHHHHhc
Q 005598 553 FNLSIYHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPD-------GRVAIGQENGIPVLVEVVE 619 (689)
Q Consensus 553 ~nLs~~~~n~~~lv~~G~v~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e-------~r~~i~~~g~v~~Lv~lL~ 619 (689)
+-|+.+++....+...+.++.|++++ .....++.-++.+|.||...+. ....+++.|..+ +++.|.
T Consensus 212 WlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~ 286 (429)
T cd00256 212 WLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLE 286 (429)
T ss_pred HHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHh
Confidence 99999988888888899999999999 4567788999999999998431 223445556555 444443
No 63
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.32 E-value=5.1e-05 Score=86.93 Aligned_cols=250 Identities=17% Similarity=0.190 Sum_probs=153.8
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHh-hcCCccHH
Q 005598 403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNL-SINDNNKS 481 (689)
Q Consensus 403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nL-s~~~~~k~ 481 (689)
...++.+.+.+.++++.++..|+.++..+.+.++.. +... .++.|..+|...++.++..|+.++..+ ..++...
T Consensus 113 ~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~- 187 (526)
T PF01602_consen 113 EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK- 187 (526)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT-
T ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhh-
Confidence 456788889999999999999999999998866543 3333 689999999889999999999999988 2111101
Q ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHH
Q 005598 482 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN 561 (689)
Q Consensus 482 ~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n 561 (689)
-.-...+..|..++...++-.+..++.+|..++........- ...++.+..+|++.++.+...++.++..+.....
T Consensus 188 -~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~- 263 (526)
T PF01602_consen 188 -SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE- 263 (526)
T ss_dssp -THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-
T ss_pred -hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-
Confidence 111233445555556777888888888888776543322200 3456777777776677777777777777665444
Q ss_pred HHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhc-cCCHHHHHHHHHHHHHHhhC
Q 005598 562 KARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVE-LGSARGKENAAAALLQLCTN 639 (689)
Q Consensus 562 ~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~-s~s~~~~e~Av~aL~~L~~~ 639 (689)
.-..+++.|+.+| +++..+.-.++..|..++... ...+ . .....+..+. +.+..++..++.+|..++..
T Consensus 264 ----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v-~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~ 334 (526)
T PF01602_consen 264 ----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAV-F--NQSLILFFLLYDDDPSIRKKALDLLYKLANE 334 (526)
T ss_dssp ----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHH-G--THHHHHHHHHCSSSHHHHHHHHHHHHHH--H
T ss_pred ----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhh-h--hhhhhhheecCCCChhHHHHHHHHHhhcccc
Confidence 4445666777777 445556667777777776643 1111 1 2222233333 56677777777777777643
Q ss_pred CHhhHHHHHhCCChHHHHHhhh-cCCHHHHHHHHHHHHH
Q 005598 640 SSRFCSMVLQEGAVPPLVALSQ-SGTPRAKEKAQALLSY 677 (689)
Q Consensus 640 ~~~~~~~lv~~g~i~~L~~LL~-~~~~~vr~~A~~lL~~ 677 (689)
. +... +++.|...+. ..++..++.+...+..
T Consensus 335 ~--n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~ 366 (526)
T PF01602_consen 335 S--NVKE-----ILDELLKYLSELSDPDFRRELIKAIGD 366 (526)
T ss_dssp H--HHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHH
T ss_pred c--chhh-----HHHHHHHHHHhccchhhhhhHHHHHHH
Confidence 2 2222 3444555552 2244455554444333
No 64
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.31 E-value=3.1e-05 Score=83.42 Aligned_cols=261 Identities=16% Similarity=0.192 Sum_probs=182.4
Q ss_pred hhhHHHHHHHHhcCCCHHH--HHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcC-C
Q 005598 402 IETQVRKLVEDLKSTSLDT--QREATAELRLLAKHNMDNRMVIANCGAINILVDMLH-SSETKIQENAVTALLNLSIN-D 477 (689)
Q Consensus 402 ~~~~V~~Lv~~L~s~~~~~--q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~-s~~~~v~~~Al~aL~nLs~~-~ 477 (689)
..+.+..|++++.+++.+. +.+|.+.|-.+.. .+||..++..| +..++.+-+ ...++.+...+.+|.++-.+ +
T Consensus 178 ~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSe 254 (832)
T KOG3678|consen 178 LDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSE 254 (832)
T ss_pred ccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhH
Confidence 3567889999999887666 6778888877765 37899998876 444444333 24577888899999999765 5
Q ss_pred ccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccC--chhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhh
Q 005598 478 NNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI--EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL 555 (689)
Q Consensus 478 ~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~--~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nL 555 (689)
+....+++.|+++.++--.+..++.+..+++-+|.|++.. ...+..|++..+-+-|.-|-.+.+.-.+..|+.+++-|
T Consensus 255 et~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vl 334 (832)
T KOG3678|consen 255 ETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVL 334 (832)
T ss_pred HHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhh
Confidence 5677888999999998888888899999999999999874 45678888888888888888777888889999999999
Q ss_pred hhchHHHHHHHHhCcHH---HHHHhcCCChHHHHHHHHHHHHHhCCchhHHHHHhc---CcHHHHHHHhccCCHHHHHHH
Q 005598 556 SIYHENKARIVQAGAVK---HLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQE---NGIPVLVEVVELGSARGKENA 629 (689)
Q Consensus 556 s~~~~n~~~lv~~G~v~---~Lv~LL~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~---g~v~~Lv~lL~s~s~~~~e~A 629 (689)
+.+.+.-..+.+.|.+. .|+..+++.. .+. +. ....+. .-++.|+.+|++.-.+.+-.+
T Consensus 335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~------------FAR--D~-hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~ 399 (832)
T KOG3678|consen 335 ATNKEVEREVRKSGTLALVEPLVASLDPGR------------FAR--DA-HDYAQGRGPDDLQRLVPLLDSNRLEAQCIG 399 (832)
T ss_pred hhhhhhhHHHhhccchhhhhhhhhccCcch------------hhh--hh-hhhhccCChHHHHHhhhhhhcchhhhhhhH
Confidence 98887666666666443 3333333321 111 00 011111 236788888885544444433
Q ss_pred HHHHHHHhh-CCHhhHHHHH-hCCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 005598 630 AAALLQLCT-NSSRFCSMVL-QEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 680 (689)
Q Consensus 630 v~aL~~L~~-~~~~~~~~lv-~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~ 680 (689)
+.-|+.=+. .+......+. +-|+|+.|.++..+.+....+-|.++|..+-.
T Consensus 400 AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 400 AFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE 452 (832)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence 333322111 1223334444 46999999999998887777888899988754
No 65
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.29 E-value=3.9e-07 Score=91.86 Aligned_cols=65 Identities=14% Similarity=0.240 Sum_probs=58.2
Q ss_pred ccccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCCccHHHHHHHHHHHH
Q 005598 100 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCE 165 (689)
Q Consensus 100 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~ 165 (689)
-++|-||.+.++-|++++||||||.-||.+||... ..||+|+.+.....+.-+.-++..++.|..
T Consensus 25 ~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~q-p~CP~Cr~~~~esrlr~~s~~~ei~es~~~ 89 (391)
T COG5432 25 MLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQ-PFCPVCREDPCESRLRGSSGSREINESHAR 89 (391)
T ss_pred HHHhhhhhheeecceecccccchhHHHHHHHhcCC-CCCccccccHHhhhcccchhHHHHHHhhhh
Confidence 47999999999999999999999999999999876 559999999988888888888888887744
No 66
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.27 E-value=3.7e-07 Score=68.22 Aligned_cols=40 Identities=33% Similarity=0.728 Sum_probs=33.8
Q ss_pred cccccccccc---CceecCCCccccHHHHHHHHhcCCCCCCCCC
Q 005598 102 CCPLSLELMT---DPVIVASGQTYERAFIKKWIDLGLFVCPKTR 142 (689)
Q Consensus 102 ~CpI~~~lm~---dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~ 142 (689)
.||||++-|. .++.++|||.|++.||.+|++.. .+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~-~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN-NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS-SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC-CcCCccC
Confidence 4999999984 55668999999999999999985 5799995
No 67
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.26 E-value=8.8e-07 Score=65.58 Aligned_cols=44 Identities=34% Similarity=0.804 Sum_probs=38.8
Q ss_pred ccccccccccCceecC-CCccccHHHHHHHHhcCCCCCCCCCCcC
Q 005598 102 CCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLGLFVCPKTRQTL 145 (689)
Q Consensus 102 ~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~l~~~~~~cP~t~~~l 145 (689)
.||||++.+.+|+.+. |||.|++.|+.+|+..+...||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999999998876 9999999999999998667799998753
No 68
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.23 E-value=6.3e-06 Score=75.35 Aligned_cols=153 Identities=19% Similarity=0.168 Sum_probs=130.7
Q ss_pred hhCChHHHHHhhcCC-CHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHH
Q 005598 526 RSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRV 603 (689)
Q Consensus 526 ~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~ 603 (689)
..+.+..||+-+... +.+.+.....-|.|.+.++-|-..+.+..++...+.-| ..+..+++.+++.|+|+|..+.+..
T Consensus 14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~ 93 (173)
T KOG4646|consen 14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAK 93 (173)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHH
Confidence 346677777777654 78899999999999999999999999999999999999 5778899999999999999999999
Q ss_pred HHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 005598 604 AIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 678 (689)
Q Consensus 604 ~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L 678 (689)
.|.++++++.++..+.+....+...|+.+|..||-.+...+..+....++..+...-.+...+-+.-|...|...
T Consensus 94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~ 168 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDKH 168 (173)
T ss_pred HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999988888888877777777776555555555565555443
No 69
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=9.3e-07 Score=90.01 Aligned_cols=55 Identities=25% Similarity=0.502 Sum_probs=47.9
Q ss_pred CCCC-ccccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCC
Q 005598 96 PIPS-DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLI 151 (689)
Q Consensus 96 ~~p~-~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~ 151 (689)
.+|+ .+.|-||++-+.||--+||||.||=+||..|..+. .-||.||+++++..++
T Consensus 234 ~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek-~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 234 SIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEK-AECPLCREKFQPSKVI 289 (293)
T ss_pred cCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccc-cCCCcccccCCCccee
Confidence 4555 59999999999999999999999999999999876 4499999999886543
No 70
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.14 E-value=2.1e-06 Score=61.28 Aligned_cols=39 Identities=41% Similarity=0.943 Sum_probs=35.8
Q ss_pred cccccccccCceecCCCccccHHHHHHHHhcCCCCCCCC
Q 005598 103 CPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKT 141 (689)
Q Consensus 103 CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t 141 (689)
||||++...+|++++|||.|+..|+..|+..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998655679986
No 71
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=98.10 E-value=8.7e-07 Score=94.21 Aligned_cols=77 Identities=26% Similarity=0.424 Sum_probs=61.9
Q ss_pred cccccccccccCceecC-CCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCCccHHHHHHHHHHHHHcCCCCCCCCCcCC
Q 005598 101 FCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVKLPDPTKTAS 179 (689)
Q Consensus 101 f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~~~~~~~~~~~~ 179 (689)
|.|.|++++.++||+-+ +||.|||+.|++|+.+. .+||+|+++|+.++|+|-. --...-|+|+...+
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~-G~DPIt~~pLs~eelV~Ik-----------~~~~v~pk~~satS 68 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAET-GKDPITNEPLSIEELVEIK-----------VPAQVRPKPPSATS 68 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHHc-CCCCCCCCcCCHHHeeecc-----------ccccccCCCCCccc
Confidence 57999999999999965 99999999999999976 5599999999999988852 11223466665555
Q ss_pred CCCCCCcccccC
Q 005598 180 LNQPSPLFVHAD 191 (689)
Q Consensus 180 ~~~~~~~~~~~~ 191 (689)
+ |..|.++||
T Consensus 69 I--PalL~~lQd 78 (506)
T KOG0289|consen 69 I--PALLKTLQD 78 (506)
T ss_pred h--HHHHHHHHH
Confidence 4 777888888
No 72
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.09 E-value=0.00013 Score=81.93 Aligned_cols=274 Identities=13% Similarity=0.090 Sum_probs=173.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccCcc----cHH-HHHhcC--cHHHHHHhhcCCCHHHH--HHHHHHHHHhh-cCC
Q 005598 408 KLVEDLKSTSLDTQREATAELRLLAKHNMD----NRM-VIANCG--AINILVDMLHSSETKIQ--ENAVTALLNLS-IND 477 (689)
Q Consensus 408 ~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~----nr~-~i~~~g--~I~~Lv~lL~s~~~~v~--~~Al~aL~nLs-~~~ 477 (689)
.+-+++++++...+..++.+|..+...+.. .+. .+.+.| .+-..-.+.-..++-+. ..++.+.+-++ .-.
T Consensus 236 ~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~s 315 (678)
T KOG1293|consen 236 VVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFAS 315 (678)
T ss_pred hhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHH
Confidence 455666677777888888888877665411 111 122222 11111111111222221 11222222222 112
Q ss_pred ccHHHHHHcCCHHHHHHHHcC------CCHHHHHHHHHHHHhccc-----CchhHHHHHhhCChHHHHHhhcCCCHHHHH
Q 005598 478 NNKSAIANANAIEPLIHVLQT------GSPEARENAAATLFSLSV-----IEDNKIKIGRSGAIGPLVDLLGNGTPRGKK 546 (689)
Q Consensus 478 ~~k~~i~~~g~l~~Lv~lL~s------~~~~~~~~Aa~aL~nLs~-----~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~ 546 (689)
..+....+...++.++++|.. +.++.+.-++.-...+.. .-.++..+.+.-....+..+....+.....
T Consensus 316 klq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~a 395 (678)
T KOG1293|consen 316 KLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVA 395 (678)
T ss_pred hhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHH
Confidence 334444555677777777653 233333333322222211 122344454445555555555566788888
Q ss_pred HHHHHHHhhhhch-HHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHhccCCH
Q 005598 547 DAATALFNLSIYH-ENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSA 623 (689)
Q Consensus 547 ~Al~aL~nLs~~~-~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~v~~Lv~lL~s~s~ 623 (689)
+|+.++.+++..- .-+..+-...+...|++++ +++..+...++++|.||.. ...-+..++..|+|..+..++...+.
T Consensus 396 aa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~ 475 (678)
T KOG1293|consen 396 AALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDF 475 (678)
T ss_pred HHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCc
Confidence 8888888887633 2233345577899999999 6777788899999999987 66779999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCHhhHHHH-HhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 005598 624 RGKENAAAALLQLCTNSSRFCSMV-LQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 681 (689)
Q Consensus 624 ~~~e~Av~aL~~L~~~~~~~~~~l-v~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~~ 681 (689)
..+..+.++|+++..++....... ..-=....|..+..+.+..+++.+-.+||+|...
T Consensus 476 n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 476 NSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred hHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 999999999999999886433333 3333456778888888999999999999999864
No 73
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.00011 Score=76.06 Aligned_cols=234 Identities=21% Similarity=0.237 Sum_probs=163.2
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhh
Q 005598 449 NILVDMLHSSETKIQENAVTALLNLSINDNNKSAIAN-ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS 527 (689)
Q Consensus 449 ~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~-~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~ 527 (689)
.-|+.+|.+.++.|+..|+..|..|+.. ..+..... ...++.+.+++....+ .+.|+.+|.|++.....+..+...
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~ 82 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD 82 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH
Confidence 3578899999999999999999888755 33333332 3577888898876655 678899999999999888888777
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHH-------hCcHHHHHHhcCCCh---HHHHHHHHHHHHHhC
Q 005598 528 GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ-------AGAVKHLVDLMDPAA---GMVDKAVAVLANLAT 597 (689)
Q Consensus 528 g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~-------~G~v~~Lv~LL~~~~---~v~e~Al~~L~nLa~ 597 (689)
.++.++.++.+.........+.+|.||+..+.....+.. .|.+.....+++.+. .-.....-+++||+.
T Consensus 83 -~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~ 161 (353)
T KOG2973|consen 83 -LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQ 161 (353)
T ss_pred -HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhh
Confidence 899999999988778888899999999997765544432 334444444444322 223566778999999
Q ss_pred CchhHHHHHhcCcH--HHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHh-CCChHHHH-----------------
Q 005598 598 IPDGRVAIGQENGI--PVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQ-EGAVPPLV----------------- 657 (689)
Q Consensus 598 ~~e~r~~i~~~g~v--~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~-~g~i~~L~----------------- 657 (689)
...||..+.+...+ ..++.+-..++.--+...+++|.|+|.....+-..+.. .+.++.|+
T Consensus 162 ~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~L 241 (353)
T KOG2973|consen 162 FEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAKL 241 (353)
T ss_pred hhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcC
Confidence 99999999876642 33443333345555667888999999877633332221 12233222
Q ss_pred ----Hhhh-----cCCHHHHHHHHHHHHHhhcCcCCCC
Q 005598 658 ----ALSQ-----SGTPRAKEKAQALLSYFRNQRHGNA 686 (689)
Q Consensus 658 ----~LL~-----~~~~~vr~~A~~lL~~L~~~~~~~~ 686 (689)
+++. ..++.++.+-.++|-+|+..+.||+
T Consensus 242 P~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe 279 (353)
T KOG2973|consen 242 PVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGRE 279 (353)
T ss_pred CHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHH
Confidence 2222 1246789999999999998888874
No 74
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.07 E-value=5e-06 Score=86.84 Aligned_cols=65 Identities=20% Similarity=0.290 Sum_probs=49.7
Q ss_pred Cccccccccc-cccCce----ecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCC----CCccHHHHHHHHHH
Q 005598 99 SDFCCPLSLE-LMTDPV----IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT----LIPNYTVKALIANW 163 (689)
Q Consensus 99 ~~f~CpI~~~-lm~dPV----~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~----l~pn~~l~~~i~~~ 163 (689)
++..||+|.. ....|= +.+|||+||++||.++|..+...||.|+.++.... +.++..+.+.|.--
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV~iR 75 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEVDIR 75 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHHHHH
Confidence 5678999997 244553 23799999999999999887778999999998766 55666666665543
No 75
>PHA02926 zinc finger-like protein; Provisional
Probab=98.02 E-value=3.6e-06 Score=82.74 Aligned_cols=50 Identities=14% Similarity=0.307 Sum_probs=41.0
Q ss_pred CCCccccccccccccC---------ceecCCCccccHHHHHHHHhcC-----CCCCCCCCCcCC
Q 005598 97 IPSDFCCPLSLELMTD---------PVIVASGQTYERAFIKKWIDLG-----LFVCPKTRQTLA 146 (689)
Q Consensus 97 ~p~~f~CpI~~~lm~d---------PV~~~~G~ty~r~~I~~~l~~~-----~~~cP~t~~~l~ 146 (689)
...+..|+||++...+ +++.+|||+||..||.+|.... ...||.||+.+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 4667899999998644 4677999999999999999753 235999999876
No 76
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.00037 Score=82.95 Aligned_cols=233 Identities=17% Similarity=0.157 Sum_probs=155.4
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-CccHHH
Q 005598 404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSA 482 (689)
Q Consensus 404 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~-~~~k~~ 482 (689)
..++.+-.+|+|.++..+..|+..|..++.+..+.-.... ..+++..+..|+.+++.|+..|+.+++.++.+ ...-..
T Consensus 348 ~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk 426 (1075)
T KOG2171|consen 348 PLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQK 426 (1075)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHH
Confidence 4567778888999999999999999999886543322211 25788888999999999999999999999865 233333
Q ss_pred HHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHhcccCchhHHHHH--hhCChHHHHH-hhcCCCHHHHHHHHHHHHhhhhc
Q 005598 483 IANANAIEPLIHVLQTG-SPEARENAAATLFSLSVIEDNKIKIG--RSGAIGPLVD-LLGNGTPRGKKDAATALFNLSIY 558 (689)
Q Consensus 483 i~~~g~l~~Lv~lL~s~-~~~~~~~Aa~aL~nLs~~~~~k~~I~--~~g~I~~Lv~-LL~~~~~~v~~~Al~aL~nLs~~ 558 (689)
-...-.++.|+..+.+. ++.++.+|+.+|.|++..-. +..|. -.+.+..++. ++.++.+.++..++.+|...+..
T Consensus 427 ~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~-~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~A 505 (1075)
T KOG2171|consen 427 KHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD-KSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADA 505 (1075)
T ss_pred HHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 44456777888888764 68999999999999875322 12222 2356663444 45567899999999999998875
Q ss_pred hHHHHHHHHhCcHHHHHHhcC--CChHHHHH---HHHHHHHHhCCchhHHHHHhc--CcHHHHHHH---hccCCHHHHHH
Q 005598 559 HENKARIVQAGAVKHLVDLMD--PAAGMVDK---AVAVLANLATIPDGRVAIGQE--NGIPVLVEV---VELGSARGKEN 628 (689)
Q Consensus 559 ~~n~~~lv~~G~v~~Lv~LL~--~~~~v~e~---Al~~L~nLa~~~e~r~~i~~~--g~v~~Lv~l---L~s~s~~~~e~ 628 (689)
.+..-.-.-...++.|.++|. .+++..+. .+.++..++. .-|++.+... ..+..++.+ ....+...+.+
T Consensus 506 A~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~-AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy 584 (1075)
T KOG2171|consen 506 AQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIAR-AVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSY 584 (1075)
T ss_pred HhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHH-HhhhhhhhHhHHHHHHHHHhhcccchhhccccHHH
Confidence 555444444678888888882 22333333 3333333332 4455555432 235555555 23345556667
Q ss_pred HHHHHHHHhhC
Q 005598 629 AAAALLQLCTN 639 (689)
Q Consensus 629 Av~aL~~L~~~ 639 (689)
-.....++|+.
T Consensus 585 ~~~~warmc~i 595 (1075)
T KOG2171|consen 585 MIAFWARMCRI 595 (1075)
T ss_pred HHHHHHHHHHH
Confidence 77777777764
No 77
>PTZ00429 beta-adaptin; Provisional
Probab=98.00 E-value=0.00089 Score=79.24 Aligned_cols=258 Identities=16% Similarity=0.115 Sum_probs=168.1
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHH
Q 005598 402 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 481 (689)
Q Consensus 402 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~ 481 (689)
+......+++.+.+.+.+.++-+--.|..++...++.. + -++..|.+=+.+.++.++-.|++.|.++-.. +
T Consensus 66 vS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pela--l---LaINtl~KDl~d~Np~IRaLALRtLs~Ir~~-~--- 136 (746)
T PTZ00429 66 VSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKA--L---LAVNTFLQDTTNSSPVVRALAVRTMMCIRVS-S--- 136 (746)
T ss_pred chHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHH--H---HHHHHHHHHcCCCCHHHHHHHHHHHHcCCcH-H---
Confidence 35677888889989998888877777777777544321 1 2467777777888999999999998876421 1
Q ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHH
Q 005598 482 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN 561 (689)
Q Consensus 482 ~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n 561 (689)
+-.-.+..+.+.|.+.++.+|..|+-++..+-..+. ..+...|.++.|.++|.+.++.+..+|+.+|..+......
T Consensus 137 --i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~ 212 (746)
T PTZ00429 137 --VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSE 212 (746)
T ss_pred --HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCch
Confidence 112345667788889999999999999999854222 2334558899999999999999999999999999765433
Q ss_pred HHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCC
Q 005598 562 KARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 640 (689)
Q Consensus 562 ~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~ 640 (689)
.. -...+.+..|+..| +-+.-.+-..+.+|... .+...... ...+..+...|++.++.+...|+.+++++....
T Consensus 213 ~l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y--~P~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~ 287 (746)
T PTZ00429 213 KI-ESSNEWVNRLVYHLPECNEWGQLYILELLAAQ--RPSDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRC 287 (746)
T ss_pred hh-HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc--CCCCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC
Confidence 22 23355566666666 22222233344444321 22221111 245677788888889999999999999887653
Q ss_pred -HhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 005598 641 -SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 679 (689)
Q Consensus 641 -~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~ 679 (689)
+.....+.. ....+|+.|+ ++.+.++-.+..-|..+.
T Consensus 288 ~~~~~~~~~~-rl~~pLv~L~-ss~~eiqyvaLr~I~~i~ 325 (746)
T PTZ00429 288 SQELIERCTV-RVNTALLTLS-RRDAETQYIVCKNIHALL 325 (746)
T ss_pred CHHHHHHHHH-HHHHHHHHhh-CCCccHHHHHHHHHHHHH
Confidence 222222211 1224555553 445667766665554443
No 78
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.00092 Score=76.55 Aligned_cols=247 Identities=17% Similarity=0.170 Sum_probs=188.3
Q ss_pred hHHHHHHHHhcC--CCHHHHHHHHHHHHHhhccCc------ccH-----------HHHHhcCcHHHHHHhhcCCCHHHHH
Q 005598 404 TQVRKLVEDLKS--TSLDTQREATAELRLLAKHNM------DNR-----------MVIANCGAINILVDMLHSSETKIQE 464 (689)
Q Consensus 404 ~~V~~Lv~~L~s--~~~~~q~~Al~~L~~La~~s~------~nr-----------~~i~~~g~I~~Lv~lL~s~~~~v~~ 464 (689)
..++.|+.-|+. .+++....++..+..+..+.+ ..+ .+|...+.|..|+.++...|..|+.
T Consensus 61 ~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~ 140 (970)
T KOG0946|consen 61 QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRL 140 (970)
T ss_pred cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhh
Confidence 455777777763 578888889999998887652 122 1233458999999999999999999
Q ss_pred HHHHHHHHhhc--CCccHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHh-hCChHHHHHhhcCC
Q 005598 465 NAVTALLNLSI--NDNNKSAIANA-NAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGR-SGAIGPLVDLLGNG 540 (689)
Q Consensus 465 ~Al~aL~nLs~--~~~~k~~i~~~-g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~-~g~I~~Lv~LL~~~ 540 (689)
.++..|.+|-. ..+.+..+... -+|..|+.+|.+....+|-.++..|..|..+...-..++. ..++..|+.++...
T Consensus 141 ~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeE 220 (970)
T KOG0946|consen 141 YAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEE 220 (970)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999843 35666666654 7999999999988888999999999999886555555544 59999999999853
Q ss_pred ---C-HHHHHHHHHHHHhhhhc-hHHHHHHHHhCcHHHHHHhcC----CCh--------HH--HHHHHHHHHHHhCC--c
Q 005598 541 ---T-PRGKKDAATALFNLSIY-HENKARIVQAGAVKHLVDLMD----PAA--------GM--VDKAVAVLANLATI--P 599 (689)
Q Consensus 541 ---~-~~v~~~Al~aL~nLs~~-~~n~~~lv~~G~v~~Lv~LL~----~~~--------~v--~e~Al~~L~nLa~~--~ 599 (689)
+ .-+...|+..|-||..+ ..|+..+.+.+-++.|.++|. .+. .+ +..++.++..|..- .
T Consensus 221 Gg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt 300 (970)
T KOG0946|consen 221 GGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNT 300 (970)
T ss_pred CCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCc
Confidence 2 34788899999999985 468888889999999998872 121 12 24577777777651 1
Q ss_pred -----hhHHHHHhcCcHHHHHHHhccC--CHHHHHHHHHHHHHHhhCCHhhHHHHHhC
Q 005598 600 -----DGRVAIGQENGIPVLVEVVELG--SARGKENAAAALLQLCTNSSRFCSMVLQE 650 (689)
Q Consensus 600 -----e~r~~i~~~g~v~~Lv~lL~s~--s~~~~e~Av~aL~~L~~~~~~~~~~lv~~ 650 (689)
.++.++...+.+..|..++.+. ..+++..+.-++.++.+++..++..+...
T Consensus 301 ~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v 358 (970)
T KOG0946|consen 301 SSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADV 358 (970)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhc
Confidence 1234566778888888888654 67888999999999999999888888763
No 79
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.95 E-value=8.3e-06 Score=82.66 Aligned_cols=67 Identities=21% Similarity=0.341 Sum_probs=59.1
Q ss_pred cccccccccccCceec-CCCccccHHHHHHHHhcCCCCCCCCCCc-CCCCCCCccHHHHHHHHHHHHHc
Q 005598 101 FCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQT-LAHTTLIPNYTVKALIANWCELN 167 (689)
Q Consensus 101 f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~l~~~~~~cP~t~~~-l~~~~l~pn~~l~~~i~~~~~~~ 167 (689)
+.||+|..|++.|+-+ +|||+||..||+..|......||.|... +-.+.|+|+...+..|+.+.+.+
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkkq 343 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKKQ 343 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHHH
Confidence 9999999999999988 7899999999999998777889999653 45568999999999999998743
No 80
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.95 E-value=0.00082 Score=72.39 Aligned_cols=233 Identities=16% Similarity=0.192 Sum_probs=165.5
Q ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCccHH
Q 005598 405 QVRKLVEDLKS-TSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS--SETKIQENAVTALLNLSINDNNKS 481 (689)
Q Consensus 405 ~V~~Lv~~L~s-~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s--~~~~v~~~Al~aL~nLs~~~~~k~ 481 (689)
....|...+++ .+.+-..-|+++|..+.+. ++.|..++..+++..|+..|.+ .+..+|.+.+-+++.|+.++...+
T Consensus 157 ~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae 235 (442)
T KOG2759|consen 157 YKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAE 235 (442)
T ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHH
Confidence 34455555654 5555666788899999985 4889999999999999998843 467899999999999998888888
Q ss_pred HHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHhcccCch---hH----HHHHhhCChHHHHHhhcCC---CHHHHHHHH-
Q 005598 482 AIANANAIEPLIHVLQTGS-PEARENAAATLFSLSVIED---NK----IKIGRSGAIGPLVDLLGNG---TPRGKKDAA- 549 (689)
Q Consensus 482 ~i~~~g~l~~Lv~lL~s~~-~~~~~~Aa~aL~nLs~~~~---~k----~~I~~~g~I~~Lv~LL~~~---~~~v~~~Al- 549 (689)
.+...+.++.|..+++... ..+..-.++++.|+..... .+ ..++. +-++..++.|... +.++....-
T Consensus 236 ~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~-~~v~k~l~~L~~rkysDEDL~~di~~ 314 (442)
T KOG2759|consen 236 KLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVL-CKVLKTLQSLEERKYSDEDLVDDIEF 314 (442)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHh-cCchHHHHHHHhcCCCcHHHHHHHHH
Confidence 8877799999999998754 6677788889999876442 22 23333 4445555665532 333322111
Q ss_pred ------HHHHhhhhc------------------------hHHHHHHHH--hCcHHHHHHhcC--CChHHHHHHHHHHHHH
Q 005598 550 ------TALFNLSIY------------------------HENKARIVQ--AGAVKHLVDLMD--PAAGMVDKAVAVLANL 595 (689)
Q Consensus 550 ------~aL~nLs~~------------------------~~n~~~lv~--~G~v~~Lv~LL~--~~~~v~e~Al~~L~nL 595 (689)
.-...|++. .+|..++-+ -.++..|+++|+ .++.+..-|+.=++..
T Consensus 315 L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~ 394 (442)
T KOG2759|consen 315 LTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEY 394 (442)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHH
Confidence 112223332 234444444 347888999993 3444555566666666
Q ss_pred hC-CchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhC
Q 005598 596 AT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 639 (689)
Q Consensus 596 a~-~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~ 639 (689)
.+ .|+|+..+.+.|+=..++++|.+.++.++.+|..++..|..+
T Consensus 395 Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 395 VRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 66 799999999999999999999999999999999998876543
No 81
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.93 E-value=0.00098 Score=75.18 Aligned_cols=248 Identities=18% Similarity=0.090 Sum_probs=161.2
Q ss_pred CCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-CccHHHHHHcCCHHHHH
Q 005598 415 STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLI 493 (689)
Q Consensus 415 s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~-~~~k~~i~~~g~l~~Lv 493 (689)
..+......|+-++..+++.-..-|..+....++.+|+++|..++..++..++.+|.||... ...|..+...|+++.+.
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE 467 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence 45667777888888888774333444455668899999999888889999999999999865 67799999999999999
Q ss_pred HHHcCCCHHHHHHHHHHHHhcccCchhHHH--HHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchH-HHHHHHHh--
Q 005598 494 HVLQTGSPEARENAAATLFSLSVIEDNKIK--IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE-NKARIVQA-- 568 (689)
Q Consensus 494 ~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~--I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~-n~~~lv~~-- 568 (689)
..+.+.+..++..+.|+|.++....+.... ....=....++.+..+++..+++.+...|.||+.+.. ....+++.
T Consensus 468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~~~ 547 (678)
T KOG1293|consen 468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEKFK 547 (678)
T ss_pred HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHhhh
Confidence 999999999999999999999986655433 3333445667888889999999999999999988643 33444431
Q ss_pred CcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHH--------hccCCHHHHHHHHHHHHHHhh
Q 005598 569 GAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEV--------VELGSARGKENAAAALLQLCT 638 (689)
Q Consensus 569 G~v~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~l--------L~s~s~~~~e~Av~aL~~L~~ 638 (689)
..+....-.+ .....+.......+.++..--+....-.-.+..+.++-. ..+.......++++.+.++..
T Consensus 548 ~~ld~i~l~lk~a~~~pi~ie~~~~~~~l~~~~d~~~~~am~~~fk~lvl~~e~~~n~~q~s~~~qls~~~~~~iinl~~ 627 (678)
T KOG1293|consen 548 DVLDKIDLQLKIAIGSPILIEFLAKKMRLLNPLDTQQKKAMEGIFKILVLLAEVNENKKQLSIEQQLSLNIMSEIINLTT 627 (678)
T ss_pred HHHHHHHHHHhhccCCceehhhHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccC
Confidence 1112211112 233444444444444444433332222222333322222 123455667788888888766
Q ss_pred CCH--hhHHHHH-hCCChHHHHHhhhc
Q 005598 639 NSS--RFCSMVL-QEGAVPPLVALSQS 662 (689)
Q Consensus 639 ~~~--~~~~~lv-~~g~i~~L~~LL~~ 662 (689)
... .....+. ..++......+..+
T Consensus 628 ~~s~s~~dr~~~~~n~i~e~~~k~~~s 654 (678)
T KOG1293|consen 628 TDSSSNFDRSNLKLNCIWELNNKLWNS 654 (678)
T ss_pred CCCCcccchhhccccceechhhhcccc
Confidence 532 2233333 34444444444333
No 82
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.92 E-value=0.00098 Score=73.84 Aligned_cols=58 Identities=14% Similarity=0.038 Sum_probs=37.3
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCc
Q 005598 610 GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 682 (689)
Q Consensus 610 ~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~~~ 682 (689)
+++.|..+++.. .++..++.+|..+- ....++.|+..+... .+++.|.+.++.+..-+
T Consensus 241 a~~~L~~ll~d~--~vr~~a~~AlG~lg-----------~p~av~~L~~~l~d~--~~aR~A~eA~~~ItG~~ 298 (410)
T TIGR02270 241 AQAWLRELLQAA--ATRREALRAVGLVG-----------DVEAAPWCLEAMREP--PWARLAGEAFSLITGMD 298 (410)
T ss_pred HHHHHHHHhcCh--hhHHHHHHHHHHcC-----------CcchHHHHHHHhcCc--HHHHHHHHHHHHhhCCC
Confidence 455555555443 26666666665433 235677888876644 49999999999888743
No 83
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=7.3e-06 Score=89.60 Aligned_cols=72 Identities=24% Similarity=0.403 Sum_probs=57.3
Q ss_pred CCCccccccccccccCceecCCCccccHHHHHHHHhcC----CCCCCCCCCcCCCCCCCccHH----HHHHHHHHHHHcC
Q 005598 97 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLG----LFVCPKTRQTLAHTTLIPNYT----VKALIANWCELNN 168 (689)
Q Consensus 97 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~----~~~cP~t~~~l~~~~l~pn~~----l~~~i~~~~~~~~ 168 (689)
.+.+..||||++-..=|+.+.|||.||=.||.+||..+ ...||.|+..+..++|.|-+- -+..++..+..||
T Consensus 183 ~~t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng 262 (513)
T KOG2164|consen 183 GSTDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNG 262 (513)
T ss_pred cCcCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccC
Confidence 44589999999999999999999999999999999864 346999999999888776532 2344555555555
No 84
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=0.00033 Score=77.45 Aligned_cols=234 Identities=17% Similarity=0.149 Sum_probs=164.6
Q ss_pred cchhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhc---cCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 005598 400 SGIETQVRKLVEDLKSTSLDTQREATAELRLLAK---HNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN 476 (689)
Q Consensus 400 ~~~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~---~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~ 476 (689)
.-......-|..+|.+++.+++..+-..|..+-. .+|.. +.-...++.++.-+.++++.++..|+..|..+..-
T Consensus 204 ~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i 280 (675)
T KOG0212|consen 204 SYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKI 280 (675)
T ss_pred hcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcC
Confidence 3446778889999999999988554444433322 12222 11235788999999999999999999988877544
Q ss_pred CccHHHHHHcCCHHHHHHHHcCCCH-HHHHHHHH---HHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHH
Q 005598 477 DNNKSAIANANAIEPLIHVLQTGSP-EARENAAA---TLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATAL 552 (689)
Q Consensus 477 ~~~k~~i~~~g~l~~Lv~lL~s~~~-~~~~~Aa~---aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL 552 (689)
....-...-+|.+..++..+.+... .+++.+.. .|..+...+..+..|--...++.|.+.|.+.....+..++..+
T Consensus 281 ~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi 360 (675)
T KOG0212|consen 281 PGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWI 360 (675)
T ss_pred CCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 4333444456777777777766544 34443332 2344444333333332235788899999999999999999999
Q ss_pred HhhhhchHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHH
Q 005598 553 FNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAA 631 (689)
Q Consensus 553 ~nLs~~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~ 631 (689)
..|-...+++.........+.|++-| +.+..++..++.+|+++|.++..... ...+..|+++......-....+..
T Consensus 361 ~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~---~~fl~sLL~~f~e~~~~l~~Rg~l 437 (675)
T KOG0212|consen 361 ILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL---RKFLLSLLEMFKEDTKLLEVRGNL 437 (675)
T ss_pred HHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH---HHHHHHHHHHHhhhhHHHHhhhhH
Confidence 99988778877777788999999988 67888999999999999997766521 123455555556666677788889
Q ss_pred HHHHHhhC
Q 005598 632 ALLQLCTN 639 (689)
Q Consensus 632 aL~~L~~~ 639 (689)
++..||..
T Consensus 438 IIRqlC~l 445 (675)
T KOG0212|consen 438 IIRQLCLL 445 (675)
T ss_pred HHHHHHHH
Confidence 99998875
No 85
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=2.9e-06 Score=88.35 Aligned_cols=66 Identities=23% Similarity=0.347 Sum_probs=54.6
Q ss_pred CCCccccccccccccCceec-CCCccccHHHHHHHHhcCCCCCCCCCCcCCC-CCCCccHHHHHHHHH
Q 005598 97 IPSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAH-TTLIPNYTVKALIAN 162 (689)
Q Consensus 97 ~p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~-~~l~pn~~l~~~i~~ 162 (689)
+-.+|.||||+++++--.++ .|+|-||+.||-.-+..+++.||.||+.+.. ..|.++...-.+|.+
T Consensus 40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~ 107 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISK 107 (381)
T ss_pred hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHH
Confidence 44578999999999999887 5999999999999999999999999999754 467766555555554
No 86
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.86 E-value=1.2e-05 Score=60.10 Aligned_cols=41 Identities=22% Similarity=0.432 Sum_probs=34.8
Q ss_pred ccccccccc---cCceecCCCccccHHHHHHHHhcCCCCCCCCCC
Q 005598 102 CCPLSLELM---TDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQ 143 (689)
Q Consensus 102 ~CpI~~~lm---~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~ 143 (689)
.||||.+.+ ..|++++|||+||..||.++. .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 389999988 457889999999999999998 44467999985
No 87
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.00038 Score=78.25 Aligned_cols=268 Identities=16% Similarity=0.148 Sum_probs=182.8
Q ss_pred cchhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHH-h---cCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 005598 400 SGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIA-N---CGAINILVDMLHSSETKIQENAVTALLNLSI 475 (689)
Q Consensus 400 ~~~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~-~---~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~ 475 (689)
..+...++.|..+|.+.+...+.-|..+|.+++.++.+.-..-. . .-.+|.++.+.++.++.++..|+.++..+..
T Consensus 124 ~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~ 203 (885)
T KOG2023|consen 124 QHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFII 203 (885)
T ss_pred ccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheee
Confidence 34567899999999999888899999999999886543222111 0 1368999999999999999999999866543
Q ss_pred CCccHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHh
Q 005598 476 NDNNKSAIAN-ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFN 554 (689)
Q Consensus 476 ~~~~k~~i~~-~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~n 554 (689)
. ..+..+.. ..++..+..+-.+.++++|.+.+.++..|...-..|-.---.++++.++..-++.+..+...|+.....
T Consensus 204 ~-~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla 282 (885)
T KOG2023|consen 204 I-QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLA 282 (885)
T ss_pred c-CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHH
Confidence 2 23333333 256777777777888999999999998886533222221113778888888888889999999999999
Q ss_pred hhhchHHHHHHHH--hCcHHHHHHhc-CCCh-------------------------------------------------
Q 005598 555 LSIYHENKARIVQ--AGAVKHLVDLM-DPAA------------------------------------------------- 582 (689)
Q Consensus 555 Ls~~~~n~~~lv~--~G~v~~Lv~LL-~~~~------------------------------------------------- 582 (689)
++..+-.+..+.. ...+|+|+.=+ .++.
T Consensus 283 ~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DD 362 (885)
T KOG2023|consen 283 LAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDD 362 (885)
T ss_pred HhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccc
Confidence 9987744443332 56778877633 1000
Q ss_pred -------HHHH---HHHHHHHHHhCCchhHHHHHhcCc----HHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHH
Q 005598 583 -------GMVD---KAVAVLANLATIPDGRVAIGQENG----IPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVL 648 (689)
Q Consensus 583 -------~v~e---~Al~~L~nLa~~~e~r~~i~~~g~----v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv 648 (689)
.++. .|+.+|+|+- .... +|.|-+.|.+....++|.++.+|..++.++-+ -++
T Consensus 363 dD~~~dWNLRkCSAAaLDVLanvf----------~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~---g~~ 429 (885)
T KOG2023|consen 363 DDAFSDWNLRKCSAAALDVLANVF----------GDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQ---GFV 429 (885)
T ss_pred ccccccccHhhccHHHHHHHHHhh----------HHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhh---hcc
Confidence 0111 1223333321 2223 34455555667788999999999999876531 122
Q ss_pred h--CCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 005598 649 Q--EGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 681 (689)
Q Consensus 649 ~--~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~~ 681 (689)
. .-.+|.|+.+|.+..+-+|....|.|.....+
T Consensus 430 p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~w 464 (885)
T KOG2023|consen 430 PHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKW 464 (885)
T ss_pred cchHHHHHHHHHHhccCccceeeeeeeeHhhhhhh
Confidence 1 13578889999988898998888888776654
No 88
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.0024 Score=76.33 Aligned_cols=273 Identities=18% Similarity=0.167 Sum_probs=178.6
Q ss_pred chhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcc-cHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-Cc
Q 005598 401 GIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMD-NRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DN 478 (689)
Q Consensus 401 ~~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~-nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~-~~ 478 (689)
.+...++.|+...+|+++..|..|+..|..+...-.. .+..+. .+.+.|.+.+...+..|+..|++++..++.. ++
T Consensus 115 ~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~--~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~ 192 (1075)
T KOG2171|consen 115 KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLD--DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLEN 192 (1075)
T ss_pred chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHH--HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhcc
Confidence 4678999999999999999999999999988763211 111111 2334444445555555999999999888643 33
Q ss_pred cHHHHHHc-CCHHHHHHHH----cCCCHHHHHHHHHHHHhcccCch-h-HHHHHhhCChHHHHHhhcCC--CHHHHHHHH
Q 005598 479 NKSAIANA-NAIEPLIHVL----QTGSPEARENAAATLFSLSVIED-N-KIKIGRSGAIGPLVDLLGNG--TPRGKKDAA 549 (689)
Q Consensus 479 ~k~~i~~~-g~l~~Lv~lL----~s~~~~~~~~Aa~aL~nLs~~~~-~-k~~I~~~g~I~~Lv~LL~~~--~~~v~~~Al 549 (689)
++...-.- ..+|.++.+| ..++......+..+|-.|+.... . +..+ ..+|...+.+.++. +..++..|+
T Consensus 193 ~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l--~~ii~~~l~Ia~n~~l~~~~R~~AL 270 (1075)
T KOG2171|consen 193 NKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHL--SQIIQFSLEIAKNKELENSIRHLAL 270 (1075)
T ss_pred chHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHH--HHHHHHHHHHhhcccccHHHHHHHH
Confidence 44333322 4566666555 45666666777777777654322 1 1212 13455556666654 688999999
Q ss_pred HHHHhhhhchHHHHHH---HHhCcHHHHHHhc-C--CC--------------hHHHHHHHHHHHHHhCCchhHHHHHhcC
Q 005598 550 TALFNLSIYHENKARI---VQAGAVKHLVDLM-D--PA--------------AGMVDKAVAVLANLATIPDGRVAIGQEN 609 (689)
Q Consensus 550 ~aL~nLs~~~~n~~~l---v~~G~v~~Lv~LL-~--~~--------------~~v~e~Al~~L~nLa~~~e~r~~i~~~g 609 (689)
..|..++.+.....+. .....++.++.++ + .+ ......|..+|..++.+-.+...+- -
T Consensus 271 e~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p--~ 348 (1075)
T KOG2171|consen 271 EFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLP--P 348 (1075)
T ss_pred HHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehH--H
Confidence 9999998874332222 2345667777765 1 11 0122356777777777554443221 2
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 005598 610 GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 680 (689)
Q Consensus 610 ~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~ 680 (689)
.++.+-.+|.+.+..-++.|..+|..++.++.+.....+ ..+++..+..+++..++||-.|..++..+.-
T Consensus 349 ~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~st 418 (1075)
T KOG2171|consen 349 LFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMST 418 (1075)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhh
Confidence 356666677889999999999999999988875443322 3578888888999999999999999887764
No 89
>PF05536 Neurochondrin: Neurochondrin
Probab=97.84 E-value=0.0011 Score=76.18 Aligned_cols=234 Identities=15% Similarity=0.097 Sum_probs=157.8
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCccc---HHHHHhcCcHHHHHHhhcC-------CCHHHHHHHHHHHHH
Q 005598 403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDN---RMVIANCGAINILVDMLHS-------SETKIQENAVTALLN 472 (689)
Q Consensus 403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~n---r~~i~~~g~I~~Lv~lL~s-------~~~~v~~~Al~aL~n 472 (689)
...+...+++|++.+.+.+..++..+.++...++.. ++.+.++=+.+.|-++|.+ +....+.-|+.+|..
T Consensus 4 ~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 4 SASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred hHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 357888999999888777788899999998876543 4457777667889999987 234567889999999
Q ss_pred hhcCCccHHHHHHcCCHHHHHHHHcCCCH-HHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHH
Q 005598 473 LSINDNNKSAIANANAIEPLIHVLQTGSP-EARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATA 551 (689)
Q Consensus 473 Ls~~~~~k~~i~~~g~l~~Lv~lL~s~~~-~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~a 551 (689)
++.+++....---.+.||.|+.++.+.+. ++...+..+|..++..++.+..+.+.|+++.|++.+.+ .+.....|+.+
T Consensus 84 f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l 162 (543)
T PF05536_consen 84 FCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNL 162 (543)
T ss_pred HcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence 99876554322223569999999988776 99999999999999999999999999999999999988 56678888888
Q ss_pred HHhhhhchHHHHHHHH----hCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchh--HHHH----HhcCcHHHHHHHhcc
Q 005598 552 LFNLSIYHENKARIVQ----AGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDG--RVAI----GQENGIPVLVEVVEL 620 (689)
Q Consensus 552 L~nLs~~~~n~~~lv~----~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~--r~~i----~~~g~v~~Lv~lL~s 620 (689)
|.+++........--. ..+++.|-..+ .......-..+..|..+-...+. .... .-..+...|..+|++
T Consensus 163 L~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s 242 (543)
T PF05536_consen 163 LLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS 242 (543)
T ss_pred HHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence 8888774331110011 12334444444 22333344566677766553321 1111 112334555666665
Q ss_pred C-CHHHHHHHHHHHHHHh
Q 005598 621 G-SARGKENAAAALLQLC 637 (689)
Q Consensus 621 ~-s~~~~e~Av~aL~~L~ 637 (689)
. .+..+..|..+...|.
T Consensus 243 r~~~~~R~~al~Laa~Ll 260 (543)
T PF05536_consen 243 RLTPSQRDPALNLAASLL 260 (543)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 4 4555555444444443
No 90
>PTZ00429 beta-adaptin; Provisional
Probab=97.83 E-value=0.0082 Score=71.23 Aligned_cols=248 Identities=17% Similarity=0.147 Sum_probs=161.9
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHH-HhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHH
Q 005598 403 ETQVRKLVEDLKSTSLDTQREATAELR-LLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 481 (689)
Q Consensus 403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~-~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~ 481 (689)
++.+.+|-+.|.+.+...+..+++.+- .++.+. ..- .+.+.++.++.+++.+++.-+...|.+++......
T Consensus 31 kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~-DvS------~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel- 102 (746)
T PTZ00429 31 RGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGR-DVS------YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEK- 102 (746)
T ss_pred cchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC-Cch------HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHH-
Confidence 456788888888888888888888554 444432 221 24556677888899888888777777776432211
Q ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHH
Q 005598 482 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN 561 (689)
Q Consensus 482 ~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n 561 (689)
.+ -++..|.+=+.++++.+|..|+++|.++-.. +.- .-.+..+.+.|.+.++-+++.|+.++..|-....
T Consensus 103 al---LaINtl~KDl~d~Np~IRaLALRtLs~Ir~~-~i~-----e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p- 172 (746)
T PTZ00429 103 AL---LAVNTFLQDTTNSSPVVRALAVRTMMCIRVS-SVL-----EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM- 172 (746)
T ss_pred HH---HHHHHHHHHcCCCCHHHHHHHHHHHHcCCcH-HHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc-
Confidence 11 1356677778889999999999999987431 111 1245667788889999999999999999865333
Q ss_pred HHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCC
Q 005598 562 KARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 640 (689)
Q Consensus 562 ~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~ 640 (689)
..+...|.++.|.++| +.+..++..|+.+|..+.......- -...+.+..|+..|...++..+-....+|....-.+
T Consensus 173 -elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~ 250 (746)
T PTZ00429 173 -QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSD 250 (746)
T ss_pred -ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC
Confidence 2344678888999988 6788889999999999986433221 122344566666676667777776666664322111
Q ss_pred HhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHH
Q 005598 641 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALL 675 (689)
Q Consensus 641 ~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL 675 (689)
. ... ...+..+...+++.++-+.-.|..++
T Consensus 251 ~---~e~--~~il~~l~~~Lq~~N~AVVl~Aik~i 280 (746)
T PTZ00429 251 K---ESA--ETLLTRVLPRMSHQNPAVVMGAIKVV 280 (746)
T ss_pred c---HHH--HHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 1 111 13445555556666655554444433
No 91
>PF05536 Neurochondrin: Neurochondrin
Probab=97.83 E-value=0.00098 Score=76.60 Aligned_cols=231 Identities=17% Similarity=0.150 Sum_probs=158.4
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc----cHHHHHHcCCHHHHHHHHcCC-------CHHHHHHHHHHHHhcc
Q 005598 447 AINILVDMLHSSETKIQENAVTALLNLSINDN----NKSAIANANAIEPLIHVLQTG-------SPEARENAAATLFSLS 515 (689)
Q Consensus 447 ~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~----~k~~i~~~g~l~~Lv~lL~s~-------~~~~~~~Aa~aL~nLs 515 (689)
.+...+.+|+..+.+-+..++..+.++....+ .+..+.++=+.+-|-++|+++ ....+.-|+.+|..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 35566778888775556666777777765432 244577776677788888873 3556778888899998
Q ss_pred cCchhHHHHHhhCChHHHHHhhcCCCH-HHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhcCCChHHHHHHHHHHHH
Q 005598 516 VIEDNKIKIGRSGAIGPLVDLLGNGTP-RGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLAN 594 (689)
Q Consensus 516 ~~~~~k~~I~~~g~I~~Lv~LL~~~~~-~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL~~~~~v~e~Al~~L~n 594 (689)
..++....---.+-||.|++.+...+. .+...|+.+|..++.+++++..+++.|+++.|.+.+.......+.|+.+|.+
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~~~~E~Al~lL~~ 165 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQSFQMEIALNLLLN 165 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCcchHHHHHHHHHH
Confidence 876654332223679999999988776 9999999999999999999999999999999999996566778999999999
Q ss_pred HhCCchhHHHHHh-----cCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHh-----hHHHHHhCCChHHHHHhhhcCC
Q 005598 595 LATIPDGRVAIGQ-----ENGIPVLVEVVELGSARGKENAAAALLQLCTNSSR-----FCSMVLQEGAVPPLVALSQSGT 664 (689)
Q Consensus 595 La~~~e~r~~i~~-----~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~-----~~~~lv~~g~i~~L~~LL~~~~ 664 (689)
++...... ..-+ ...++.|-..+.......+-..+..|..+-...+. ....-+-..+...|..++++.-
T Consensus 166 Lls~~~~~-~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~ 244 (543)
T PF05536_consen 166 LLSRLGQK-SWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRL 244 (543)
T ss_pred HHHhcchh-hhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCC
Confidence 88743321 1111 12345555555555666677778888887666531 1112222345556777777764
Q ss_pred -HHHHHHHHHHHHHh
Q 005598 665 -PRAKEKAQALLSYF 678 (689)
Q Consensus 665 -~~vr~~A~~lL~~L 678 (689)
+.-|..|..+...|
T Consensus 245 ~~~~R~~al~Laa~L 259 (543)
T PF05536_consen 245 TPSQRDPALNLAASL 259 (543)
T ss_pred CHHHHHHHHHHHHHH
Confidence 45555554444333
No 92
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.81 E-value=0.00036 Score=75.38 Aligned_cols=170 Identities=19% Similarity=0.210 Sum_probs=134.1
Q ss_pred HHHHHcCCHHHHHHHHcCCCHH--HHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHHhhhh
Q 005598 481 SAIANANAIEPLIHVLQTGSPE--ARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSI 557 (689)
Q Consensus 481 ~~i~~~g~l~~Lv~lL~s~~~~--~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~ 557 (689)
..|...|+++.|++++..++.+ ++..++.+|..+. ..+|+..++..| +..++.+-+.. .++..+..+.+|.+|..
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~-~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFK 251 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL-VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFK 251 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH-hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhh
Confidence 4566779999999999998755 5889999888764 456777777766 56666665544 57888899999999988
Q ss_pred c-hHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCC--chhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHH
Q 005598 558 Y-HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI--PDGRVAIGQENGIPVLVEVVELGSARGKENAAAAL 633 (689)
Q Consensus 558 ~-~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~--~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL 633 (689)
+ .+.++.++++|++..++-.+ ..++.+...|.-+|+|++.+ .+++..+++..+-..|.-+-.+.++..+.+||.++
T Consensus 252 HSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV 331 (832)
T KOG3678|consen 252 HSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAV 331 (832)
T ss_pred hhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHH
Confidence 4 46789999999999988777 56788899999999998874 56678888888888888888888999999999999
Q ss_pred HHHhhCCHhhHHHHHhCCCh
Q 005598 634 LQLCTNSSRFCSMVLQEGAV 653 (689)
Q Consensus 634 ~~L~~~~~~~~~~lv~~g~i 653 (689)
+.|+.+.+ .-..+-+.|.+
T Consensus 332 ~vlat~KE-~E~~VrkS~Tl 350 (832)
T KOG3678|consen 332 AVLATNKE-VEREVRKSGTL 350 (832)
T ss_pred hhhhhhhh-hhHHHhhccch
Confidence 99988764 33444444433
No 93
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=1.8e-05 Score=90.53 Aligned_cols=54 Identities=15% Similarity=0.257 Sum_probs=49.8
Q ss_pred ccccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCCcc
Q 005598 100 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 153 (689)
Q Consensus 100 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~pn 153 (689)
-++||.|..=++|-|++.|||.||-.||+..+......||.|+..|...++.|-
T Consensus 643 ~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I 696 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHRI 696 (698)
T ss_pred ceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccccccc
Confidence 379999999999999999999999999999999888899999999988877653
No 94
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.0046 Score=66.95 Aligned_cols=236 Identities=17% Similarity=0.183 Sum_probs=174.5
Q ss_pred HHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC------Ccc----HHHHHHcCCHHHHH
Q 005598 424 ATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN------DNN----KSAIANANAIEPLI 493 (689)
Q Consensus 424 Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~------~~~----k~~i~~~g~l~~Lv 493 (689)
.+..+..+|. -|.-...+++.++++.|+.+|.+.+.++....+..|..|... .+. ...+++.+.+..|+
T Consensus 104 ~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLv 182 (536)
T KOG2734|consen 104 IIQEMHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLV 182 (536)
T ss_pred HHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHH
Confidence 4556666666 456667788999999999999999999999999999998742 122 34456678888888
Q ss_pred HHHcCCC------HHHHHHHHHHHHhccc-CchhHHHHHhhCChHHHHHhhcCC--CHHHHHHHHHHHHhhhhch-HHHH
Q 005598 494 HVLQTGS------PEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNG--TPRGKKDAATALFNLSIYH-ENKA 563 (689)
Q Consensus 494 ~lL~s~~------~~~~~~Aa~aL~nLs~-~~~~k~~I~~~g~I~~Lv~LL~~~--~~~v~~~Al~aL~nLs~~~-~n~~ 563 (689)
+-+..-+ .....++...+-|+.. .++....+++.|.+.-|+.-+... -..-+..|..+|.-+..+. +++.
T Consensus 183 qnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~ 262 (536)
T KOG2734|consen 183 QNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRK 262 (536)
T ss_pred HHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhh
Confidence 8775432 3356677788888876 456677778889888888865543 3455666777777666644 4777
Q ss_pred HHHHhCcHHHHHHhc------C----CChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHH
Q 005598 564 RIVQAGAVKHLVDLM------D----PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAAL 633 (689)
Q Consensus 564 ~lv~~G~v~~Lv~LL------~----~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL 633 (689)
..-...++..|+.-+ + ++.++.+....+|+.+...++++..++...++..+.-+++. ....+..|..+|
T Consensus 263 ~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvL 341 (536)
T KOG2734|consen 263 LLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVL 341 (536)
T ss_pred hhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHH
Confidence 777888899888865 1 13457788888999988899999999988887766655554 555677788999
Q ss_pred HHHhhCCH--hhHHHHHhCCChHHHHHhhh
Q 005598 634 LQLCTNSS--RFCSMVLQEGAVPPLVALSQ 661 (689)
Q Consensus 634 ~~L~~~~~--~~~~~lv~~g~i~~L~~LL~ 661 (689)
-....+.+ .+|..+++.+++..+.-+..
T Consensus 342 d~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 342 DHAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 88877765 79999999888777766544
No 95
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=1e-05 Score=81.48 Aligned_cols=51 Identities=22% Similarity=0.376 Sum_probs=45.0
Q ss_pred CccccccccccccCceecCCCccccHHHHHH-HHhcCCCCCCCCCCcCCCCC
Q 005598 99 SDFCCPLSLELMTDPVIVASGQTYERAFIKK-WIDLGLFVCPKTRQTLAHTT 149 (689)
Q Consensus 99 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~-~l~~~~~~cP~t~~~l~~~~ 149 (689)
.+|.|+||++.|.+|+-++|||.||-.||.. |-.+....||.||+....+.
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred cccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 4899999999999999999999999999999 77766667999998776543
No 96
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.70 E-value=0.003 Score=69.15 Aligned_cols=245 Identities=15% Similarity=0.140 Sum_probs=170.0
Q ss_pred hhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHcCC--CHHHHHHHH
Q 005598 431 LAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTG--SPEARENAA 508 (689)
Q Consensus 431 La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~s~--~~~~~~~Aa 508 (689)
+-+..+.-+..+.-....+.+..++-+++.+++..+.+++..+..+...-..+.+.+.--.++.-|... ...-|++|.
T Consensus 10 l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QAL 89 (371)
T PF14664_consen 10 LLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQAL 89 (371)
T ss_pred HHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHH
Confidence 333344444444443455555555555558999999999999888888878888877666666777653 456788999
Q ss_pred HHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-CCChHHHHH
Q 005598 509 ATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDK 587 (689)
Q Consensus 509 ~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~ 587 (689)
..+..+.........+ ..|++..++.+..+.+...+..|+.+|+.|+..+ -..++..|++..|++.+ +..-.+.+.
T Consensus 90 kliR~~l~~~~~~~~~-~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~~~~~~ 166 (371)
T PF14664_consen 90 KLIRAFLEIKKGPKEI-PRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSFSISES 166 (371)
T ss_pred HHHHHHHHhcCCcccC-CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccHhHHHH
Confidence 9998876554332222 4588999999999999999999999999998843 34567899999999988 655558888
Q ss_pred HHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccC-------CH--HHHHHHHHHHHHHhhCCHhhHHHHHh-CCChHHHH
Q 005598 588 AVAVLANLATIPDGRVAIGQENGIPVLVEVVELG-------SA--RGKENAAAALLQLCTNSSRFCSMVLQ-EGAVPPLV 657 (689)
Q Consensus 588 Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~-------s~--~~~e~Av~aL~~L~~~~~~~~~~lv~-~g~i~~L~ 657 (689)
.+.++-.+..++..|..+...--+..++.-+... +. ..-..+..++..+-+.-++....-.. ..++..|+
T Consensus 167 l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv 246 (371)
T PF14664_consen 167 LLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLV 246 (371)
T ss_pred HHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHH
Confidence 9999999999999998887544455554444221 22 23344555555555544422211112 25788899
Q ss_pred HhhhcCCHHHHHHHHHHHHHh
Q 005598 658 ALSQSGTPRAKEKAQALLSYF 678 (689)
Q Consensus 658 ~LL~~~~~~vr~~A~~lL~~L 678 (689)
..++..++++|+....+|--+
T Consensus 247 ~~L~~p~~~ir~~Ildll~dl 267 (371)
T PF14664_consen 247 DSLRLPNPEIRKAILDLLFDL 267 (371)
T ss_pred HHHcCCCHHHHHHHHHHHHHH
Confidence 999999999999888865544
No 97
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.69 E-value=0.0099 Score=65.15 Aligned_cols=272 Identities=15% Similarity=0.164 Sum_probs=175.5
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCccH
Q 005598 403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS--ETKIQENAVTALLNLSINDNNK 480 (689)
Q Consensus 403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~--~~~v~~~Al~aL~nLs~~~~~k 480 (689)
......+..++-+++.+++..+.+.+|.+.. +...-..+.+.+.--.++..|..+ +..-+++|+..+..+..-.++.
T Consensus 24 ~~~~~~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~ 102 (371)
T PF14664_consen 24 SFFGERIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP 102 (371)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc
Confidence 4455566555555568888888889988877 446666677767666666777654 3334678888887775332221
Q ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchH
Q 005598 481 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE 560 (689)
Q Consensus 481 ~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~ 560 (689)
.. .-.+.+..++.+..+.++..+..+..+|+.|+..+. ..+...|++..|++.+-++........+.++..+...+.
T Consensus 103 ~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~ 179 (371)
T PF14664_consen 103 KE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPR 179 (371)
T ss_pred cc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcc
Confidence 11 244788899999999999999999999999976322 345577999999999998877788888889999988888
Q ss_pred HHHHHHHhCcHHHHHHhc-CC-------Ch--HHHHHHHHHHHHHhCCchhHHHHHhc--CcHHHHHHHhccCCHHHHHH
Q 005598 561 NKARIVQAGAVKHLVDLM-DP-------AA--GMVDKAVAVLANLATIPDGRVAIGQE--NGIPVLVEVVELGSARGKEN 628 (689)
Q Consensus 561 n~~~lv~~G~v~~Lv~LL-~~-------~~--~v~e~Al~~L~nLa~~~e~r~~i~~~--g~v~~Lv~lL~s~s~~~~e~ 628 (689)
.|..+...--+..++.-+ +. +. +....+..++..+-.+=.|--.+... .++..|+..|.-.++.++..
T Consensus 180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~ 259 (371)
T PF14664_consen 180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA 259 (371)
T ss_pred hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence 887766544455555544 21 12 12334444444433322222222211 24555555555555555555
Q ss_pred HHHHHHHHhhCC----------------------------------------------------HhhHHHHHhCCChHHH
Q 005598 629 AAAALLQLCTNS----------------------------------------------------SRFCSMVLQEGAVPPL 656 (689)
Q Consensus 629 Av~aL~~L~~~~----------------------------------------------------~~~~~~lv~~g~i~~L 656 (689)
...++..+-.-. .-....+++.|.++.|
T Consensus 260 Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L 339 (371)
T PF14664_consen 260 ILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEAL 339 (371)
T ss_pred HHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHH
Confidence 444444332100 0022345578999999
Q ss_pred HHhhhcC-CHHHHHHHHHHHHHh
Q 005598 657 VALSQSG-TPRAKEKAQALLSYF 678 (689)
Q Consensus 657 ~~LL~~~-~~~vr~~A~~lL~~L 678 (689)
+.++... ++.+.+||.-+|.-+
T Consensus 340 ~~li~~~~d~~l~~KAtlLL~el 362 (371)
T PF14664_consen 340 VELIESSEDSSLSRKATLLLGEL 362 (371)
T ss_pred HHHHhcCCCchHHHHHHHHHHHH
Confidence 9999988 688999999877654
No 98
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.012 Score=63.79 Aligned_cols=237 Identities=16% Similarity=0.165 Sum_probs=170.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-----cccHH----HHHhcCcHHHHHHhhcCCC------HHHHHHHHH
Q 005598 404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHN-----MDNRM----VIANCGAINILVDMLHSSE------TKIQENAVT 468 (689)
Q Consensus 404 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s-----~~nr~----~i~~~g~I~~Lv~lL~s~~------~~v~~~Al~ 468 (689)
..|+.|+.+|.+.|.++-...+..|..|+..+ .+... .+++.++++.|++-+..=+ ..-..+++.
T Consensus 125 n~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~ 204 (536)
T KOG2734|consen 125 NAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTLA 204 (536)
T ss_pred ccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHH
Confidence 57899999999999999999999999998643 22222 2344578888887765322 234567788
Q ss_pred HHHHhh-cCCccHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHhcccCc-hhHHHHHhhCChHHHHHhhc-----C
Q 005598 469 ALLNLS-INDNNKSAIANANAIEPLIHVLQTG--SPEARENAAATLFSLSVIE-DNKIKIGRSGAIGPLVDLLG-----N 539 (689)
Q Consensus 469 aL~nLs-~~~~~k~~i~~~g~l~~Lv~lL~s~--~~~~~~~Aa~aL~nLs~~~-~~k~~I~~~g~I~~Lv~LL~-----~ 539 (689)
++.|+. ..+.....+++.|.+..|+.-+... -...+.+|..+|.-+..+. +++...+...++..|++-+. +
T Consensus 205 vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~d 284 (536)
T KOG2734|consen 205 VVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHD 284 (536)
T ss_pred HHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhccC
Confidence 888886 4566677888888888888755543 2556788888888887754 48888888888888887764 2
Q ss_pred C----CHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhcCCChHHHHHHHHHHHHHhCCchh---HHHHHhcCcHH
Q 005598 540 G----TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDG---RVAIGQENGIP 612 (689)
Q Consensus 540 ~----~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL~~~~~v~e~Al~~L~nLa~~~e~---r~~i~~~g~v~ 612 (689)
+ ..+...+...+|+.+...+.|+..++...+++.+.-++....-..-.++++|..+...+++ +..+++..++.
T Consensus 285 P~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLr 364 (536)
T KOG2734|consen 285 PATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREKKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLR 364 (536)
T ss_pred CCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHH
Confidence 1 2355667777888888899999999998888776666644444556789999999887765 45566777766
Q ss_pred HHHHHhc---------cC-CHHHHHHHHHHHHHHhhCC
Q 005598 613 VLVEVVE---------LG-SARGKENAAAALLQLCTNS 640 (689)
Q Consensus 613 ~Lv~lL~---------s~-s~~~~e~Av~aL~~L~~~~ 640 (689)
.+..+.. .. -...-++.+.+|+.+-.+.
T Consensus 365 tiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~ 402 (536)
T KOG2734|consen 365 TIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNL 402 (536)
T ss_pred HHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhc
Confidence 6655543 12 2355678888888876654
No 99
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.0082 Score=62.79 Aligned_cols=247 Identities=14% Similarity=0.177 Sum_probs=173.8
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccH----HHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc
Q 005598 404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNR----MVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNN 479 (689)
Q Consensus 404 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr----~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~ 479 (689)
...+.|-..|...+..++.-++..+..+...++.|- ..++.+|..+.++..+...|.+|...|...|..++..+..
T Consensus 82 nlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaa 161 (524)
T KOG4413|consen 82 NLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAA 161 (524)
T ss_pred hhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHH
Confidence 445566666667777788888888877766555442 2244679999999999989999999999999999988888
Q ss_pred HHHHHHcCCHHHHHH--HHcCCCHHHHHHHHHHHHhccc-CchhHHHHHhhCChHHHHHhhcC-CCHHHHHHHHHHHHhh
Q 005598 480 KSAIANANAIEPLIH--VLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGN-GTPRGKKDAATALFNL 555 (689)
Q Consensus 480 k~~i~~~g~l~~Lv~--lL~s~~~~~~~~Aa~aL~nLs~-~~~~k~~I~~~g~I~~Lv~LL~~-~~~~v~~~Al~aL~nL 555 (689)
-..+.++..++.+-. +-...+.-+|......|..+.+ .++.....-..|.+..|..=|+. .+.-++..++.....|
T Consensus 162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL 241 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL 241 (524)
T ss_pred HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence 888888877666432 2223345566667777766654 34444445456888888777776 4677888888899999
Q ss_pred hhchHHHHHHHHhCcHHHHHHhc---CCChHHHHHHH----HHHHHHhCCchhHHHHHhc--CcHHHHHHHhccCCHHHH
Q 005598 556 SIYHENKARIVQAGAVKHLVDLM---DPAAGMVDKAV----AVLANLATIPDGRVAIGQE--NGIPVLVEVVELGSARGK 626 (689)
Q Consensus 556 s~~~~n~~~lv~~G~v~~Lv~LL---~~~~~v~e~Al----~~L~nLa~~~e~r~~i~~~--g~v~~Lv~lL~s~s~~~~ 626 (689)
+..+..++.+.+.|+++.+..++ ++++--.-.++ ..+.+.+.-.-.-+++++. -++...++++...++..+
T Consensus 242 aeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdai 321 (524)
T KOG4413|consen 242 AETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAI 321 (524)
T ss_pred HHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHH
Confidence 99999999999999999999988 23322222233 3344443322223344432 246777888888999999
Q ss_pred HHHHHHHHHHhhCCHhhHHHHHhCC
Q 005598 627 ENAAAALLQLCTNSSRFCSMVLQEG 651 (689)
Q Consensus 627 e~Av~aL~~L~~~~~~~~~~lv~~g 651 (689)
+.|+.+|..+.++.. ..+.+.+.|
T Consensus 322 eaAiDalGilGSnte-GadlllkTg 345 (524)
T KOG4413|consen 322 EAAIDALGILGSNTE-GADLLLKTG 345 (524)
T ss_pred HHHHHHHHhccCCcc-hhHHHhccC
Confidence 999999999988765 444555544
No 100
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.60 E-value=5.6e-05 Score=62.98 Aligned_cols=44 Identities=30% Similarity=0.620 Sum_probs=34.5
Q ss_pred CCCccccccccccccCc-------------eecCCCccccHHHHHHHHhcCCCCCCCCC
Q 005598 97 IPSDFCCPLSLELMTDP-------------VIVASGQTYERAFIKKWIDLGLFVCPKTR 142 (689)
Q Consensus 97 ~p~~f~CpI~~~lm~dP-------------V~~~~G~ty~r~~I~~~l~~~~~~cP~t~ 142 (689)
++++- |+||++-|.|| +..+|||.|-..||.+|+... .+||.||
T Consensus 17 ~~~d~-C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~-~~CP~CR 73 (73)
T PF12678_consen 17 IADDN-CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQN-NTCPLCR 73 (73)
T ss_dssp SCCSB-ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTS-SB-TTSS
T ss_pred CcCCc-ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcC-CcCCCCC
Confidence 34443 99999999554 235899999999999999876 5899996
No 101
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.60 E-value=0.0026 Score=74.82 Aligned_cols=201 Identities=19% Similarity=0.206 Sum_probs=153.8
Q ss_pred HhcCcHHHHHHhhcCCCHHHHHHHHHHHHH-hhcCCccHHHHHHcCCHHHHHHHHcC-C--CHHHHHHHHHHHHhcccC-
Q 005598 443 ANCGAINILVDMLHSSETKIQENAVTALLN-LSINDNNKSAIANANAIEPLIHVLQT-G--SPEARENAAATLFSLSVI- 517 (689)
Q Consensus 443 ~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~n-Ls~~~~~k~~i~~~g~l~~Lv~lL~s-~--~~~~~~~Aa~aL~nLs~~- 517 (689)
..-|+.|.+++||++.-.+++---+-+=.. |+.++.++..+++.++-..++++|.. + +++-|..|+.+|..+..+
T Consensus 509 LsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf 588 (1387)
T KOG1517|consen 509 LSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNF 588 (1387)
T ss_pred hccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHccc
Confidence 345999999999999887776544444333 47788888899999888899999987 3 357788888889888764
Q ss_pred chhHHHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHHhhhh-chHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHH
Q 005598 518 EDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLAN 594 (689)
Q Consensus 518 ~~~k~~I~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~-~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~n 594 (689)
.-.++...+.+.|..++..|.++ .+-.+..++.+|..|-. ++++|..-++.++...|..+| ++-.++...|+.+|..
T Consensus 589 ~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgt 668 (1387)
T KOG1517|consen 589 KLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGT 668 (1387)
T ss_pred chhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 44566666778999999999986 57788888999998877 678888889999999999999 6778888899999999
Q ss_pred HhCC-----chhHHHH------------HhcCcH---HHHHHHhccCCHHHHHHHHHHHHHHhhCCHhh
Q 005598 595 LATI-----PDGRVAI------------GQENGI---PVLVEVVELGSARGKENAAAALLQLCTNSSRF 643 (689)
Q Consensus 595 La~~-----~e~r~~i------------~~~g~v---~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~ 643 (689)
+..+ ++....+ ++.... ..++.++..+++.++...+.+|..+..+...+
T Consensus 669 fl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~ 737 (1387)
T KOG1517|consen 669 FLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSH 737 (1387)
T ss_pred HhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHH
Confidence 8773 3332222 122222 35666777889999998888888888776543
No 102
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=4.5e-05 Score=83.09 Aligned_cols=72 Identities=25% Similarity=0.404 Sum_probs=59.2
Q ss_pred CCCCCCccccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCC-----CCCccHHHHHHHHHHHHH
Q 005598 94 PVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT-----TLIPNYTVKALIANWCEL 166 (689)
Q Consensus 94 ~~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~-----~l~pn~~l~~~i~~~~~~ 166 (689)
+..++.+|-|-||..++..||++||||+||+.||.+.+... ..||.|+.++... ...+|+.+..+|..|+..
T Consensus 78 ~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~-~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 78 PEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQE-TECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred CccccchhhhhhhHhhcCCCccccccccccHHHHHHHhccC-CCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 44579999999999999999999999999999999977743 4599999988642 233577777888888764
No 103
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.57 E-value=0.0052 Score=69.13 Aligned_cols=261 Identities=15% Similarity=0.169 Sum_probs=171.2
Q ss_pred HHHHHHHhhccCcccHHHHHhcCcHHHHHHhh----------cCCCHHHHHHHHHHHHHhhc-CCccHHHHHHcCCHHHH
Q 005598 424 ATAELRLLAKHNMDNRMVIANCGAINILVDML----------HSSETKIQENAVTALLNLSI-NDNNKSAIANANAIEPL 492 (689)
Q Consensus 424 Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL----------~s~~~~v~~~Al~aL~nLs~-~~~~k~~i~~~g~l~~L 492 (689)
|+..|+.|++ ++.+...+....++..|+.+- ...+..+..+|+.+|+|+.. ++..|..+.+.|+.+.+
T Consensus 1 ~L~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 1 CLETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred CHHHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence 3566777777 445666666666677666654 33568899999999999874 56778888999999999
Q ss_pred HHHHcCC-----CHHHHHHHHHHHHhccc-CchhHHHHHhh-CChHHHHHhhcC-----------------CCHHHHHHH
Q 005598 493 IHVLQTG-----SPEARENAAATLFSLSV-IEDNKIKIGRS-GAIGPLVDLLGN-----------------GTPRGKKDA 548 (689)
Q Consensus 493 v~lL~s~-----~~~~~~~Aa~aL~nLs~-~~~~k~~I~~~-g~I~~Lv~LL~~-----------------~~~~v~~~A 548 (689)
+..|+.. +.++.....++|+-++. ..+.+..+.+. +++..|+..|.. ........+
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei 159 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI 159 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence 9999876 68888899999988875 55666666665 778877776641 134556789
Q ss_pred HHHHHhhhhchHHHHHHHHhC----cHHHHHHhc---C---CChHHHHHHHHHHHHHhCC-chh-------HHHH----H
Q 005598 549 ATALFNLSIYHENKARIVQAG----AVKHLVDLM---D---PAAGMVDKAVAVLANLATI-PDG-------RVAI----G 606 (689)
Q Consensus 549 l~aL~nLs~~~~n~~~lv~~G----~v~~Lv~LL---~---~~~~v~e~Al~~L~nLa~~-~e~-------r~~i----~ 606 (689)
+.+++|++........--..+ ++..|..++ . +.......++.+|.|+-.. ... ...+ .
T Consensus 160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~ 239 (446)
T PF10165_consen 160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGD 239 (446)
T ss_pred HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCC
Confidence 999999987433222111222 334444441 1 2234566777888877321 111 0011 1
Q ss_pred hcCcHHHHHHHhcc----CC----HHHHHHHHHHHHHHhhCCHhhHHHHHh----------------CCChHHHHHhhhc
Q 005598 607 QENGIPVLVEVVEL----GS----ARGKENAAAALLQLCTNSSRFCSMVLQ----------------EGAVPPLVALSQS 662 (689)
Q Consensus 607 ~~g~v~~Lv~lL~s----~s----~~~~e~Av~aL~~L~~~~~~~~~~lv~----------------~g~i~~L~~LL~~ 662 (689)
....+..|+.+|.. .. ...-.--+.+|..++..+...+..+.. ...-..|+.++.+
T Consensus 240 ~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~ 319 (446)
T PF10165_consen 240 NMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTS 319 (446)
T ss_pred ChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCC
Confidence 12346777777743 11 234445666777788776555544432 2356689999999
Q ss_pred CCHHHHHHHHHHHHHhhcCcCCC
Q 005598 663 GTPRAKEKAQALLSYFRNQRHGN 685 (689)
Q Consensus 663 ~~~~vr~~A~~lL~~L~~~~~~~ 685 (689)
..+.+|..++++|-.|++...++
T Consensus 320 ~~~~~k~~vaellf~Lc~~d~~~ 342 (446)
T PF10165_consen 320 PDPQLKDAVAELLFVLCKEDASR 342 (446)
T ss_pred CCchHHHHHHHHHHHHHhhhHHH
Confidence 88999999999998887655443
No 104
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.55 E-value=0.0029 Score=65.89 Aligned_cols=228 Identities=13% Similarity=0.128 Sum_probs=161.7
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhcCCccHHHHH-HcCCHHHHHHHHcC--CCHHHHHHHHHHHHhcccCchhHHHHHhh-C
Q 005598 453 DMLHSSETKIQENAVTALLNLSINDNNKSAIA-NANAIEPLIHVLQT--GSPEARENAAATLFSLSVIEDNKIKIGRS-G 528 (689)
Q Consensus 453 ~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~-~~g~l~~Lv~lL~s--~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~-g 528 (689)
.+++.-++-.+..|+.+|.++...++.|..+- +..+-..++.++++ |..+++.+.+-++|.|+..+.....|-.. .
T Consensus 156 kl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~d 235 (432)
T COG5231 156 KLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDD 235 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34444355567888999999988877776654 44566778888876 56889999999999999988887666554 7
Q ss_pred ChHHHHHhhcCC-CHHHHHHHHHHHHhhhhch--HHHHHHHHhCcHHHHHHhc-C---CChHHHHH---H----------
Q 005598 529 AIGPLVDLLGNG-TPRGKKDAATALFNLSIYH--ENKARIVQAGAVKHLVDLM-D---PAAGMVDK---A---------- 588 (689)
Q Consensus 529 ~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~~--~n~~~lv~~G~v~~Lv~LL-~---~~~~v~e~---A---------- 588 (689)
.+.-|+++++.. ...+.+.++.++.|++... .-...+.-.|-+...+++| + ++.+++.. .
T Consensus 236 li~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~ 315 (432)
T COG5231 236 LINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKK 315 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhh
Confidence 888899998876 4678889999999998722 3344455556555556655 1 33333211 1
Q ss_pred HHHH----HHH-----hCCc---------hhHHHHHhc--CcHHHHHHHhccCCHH-HHHHHHHHHHHHhhCCHhhHHHH
Q 005598 589 VAVL----ANL-----ATIP---------DGRVAIGQE--NGIPVLVEVVELGSAR-GKENAAAALLQLCTNSSRFCSMV 647 (689)
Q Consensus 589 l~~L----~nL-----a~~~---------e~r~~i~~~--g~v~~Lv~lL~s~s~~-~~e~Av~aL~~L~~~~~~~~~~l 647 (689)
+.+. ..| +-++ .+...+.+. ..+..|.++++...+. ....|+.-+.++.+..|+....+
T Consensus 316 l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl 395 (432)
T COG5231 316 LCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVL 395 (432)
T ss_pred hhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHH
Confidence 1111 111 1111 122334433 3578899999877655 45668888999999999999999
Q ss_pred HhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 005598 648 LQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 680 (689)
Q Consensus 648 v~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~ 680 (689)
.+-|+-+.++.|+.+.++++|-.|..++..+-.
T Consensus 396 ~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 396 SKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 999999999999999999999999998877643
No 105
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.55 E-value=5e-05 Score=83.59 Aligned_cols=67 Identities=19% Similarity=0.482 Sum_probs=55.8
Q ss_pred CCCCccccccccccccCcee-cCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCCc-cHHHHHHHHHH
Q 005598 96 PIPSDFCCPLSLELMTDPVI-VASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIP-NYTVKALIANW 163 (689)
Q Consensus 96 ~~p~~f~CpI~~~lm~dPV~-~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~p-n~~l~~~i~~~ 163 (689)
.+.+++.||||..++.||+. +.|||.||+.||..|+.. +..||.|+.++.....+| ...+++.+..|
T Consensus 17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l 85 (391)
T KOG0297|consen 17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKL 85 (391)
T ss_pred CCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhc
Confidence 36778999999999999999 599999999999999998 577999999988877666 34456655544
No 106
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.54 E-value=0.00014 Score=53.29 Aligned_cols=40 Identities=38% Similarity=0.521 Sum_probs=37.5
Q ss_pred CcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005598 435 NMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS 474 (689)
Q Consensus 435 s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs 474 (689)
+++++..+.+.|+||.|+.+|.+.+.+++++|+++|.||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3578899999999999999999999999999999999996
No 107
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.50 E-value=5.4e-05 Score=78.75 Aligned_cols=66 Identities=15% Similarity=0.331 Sum_probs=53.8
Q ss_pred CCCccccccccccccCceec-CCCccccHHHHHHHHhcCCCCCCCCCCcCCCC----CCCccHHHHHHHHHH
Q 005598 97 IPSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT----TLIPNYTVKALIANW 163 (689)
Q Consensus 97 ~p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~----~l~pn~~l~~~i~~~ 163 (689)
+=...+|++|..+|.|+-++ .|=|||||+||-+||.. ..+||.|+..+... .+.++++|+.++.++
T Consensus 12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 44678999999999999875 69999999999999998 47799999877654 366677777666543
No 108
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.50 E-value=0.0096 Score=64.24 Aligned_cols=184 Identities=24% Similarity=0.327 Sum_probs=131.6
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 005598 404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 483 (689)
Q Consensus 404 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i 483 (689)
..+..+++.+.+.+..++..|...+..+.. ..+++.|..+|...+..++..|+.+|+.+-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG--------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC---------
Confidence 478889999999888888888888555432 347899999999999999999999887762
Q ss_pred HHcCCHHHHHHHHc-CCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHH------------HHHHHH
Q 005598 484 ANANAIEPLIHVLQ-TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRG------------KKDAAT 550 (689)
Q Consensus 484 ~~~g~l~~Lv~lL~-s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v------------~~~Al~ 550 (689)
....++.|+..|. +.+..+|..++.+|..+- ...++..|+.++.+..... +..++.
T Consensus 103 -~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~----------~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~ 171 (335)
T COG1413 103 -DPEAVPPLVELLENDENEGVRAAAARALGKLG----------DERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAE 171 (335)
T ss_pred -ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcC----------chhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence 2357889999998 588999999999999874 3456888888888765333 222222
Q ss_pred HHHhhhhchHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCCHHHHHHH
Q 005598 551 ALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENA 629 (689)
Q Consensus 551 aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~A 629 (689)
+|.. +-....++.+..++ +....+...|..+|..+.... ......+...+...+..++..+
T Consensus 172 ~l~~----------~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~ 233 (335)
T COG1413 172 ALGE----------LGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRKAA 233 (335)
T ss_pred HHHH----------cCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHH
Confidence 2222 12244667777777 555677778888888877643 2345667777777777777666
Q ss_pred HHHHHHH
Q 005598 630 AAALLQL 636 (689)
Q Consensus 630 v~aL~~L 636 (689)
+.+|..+
T Consensus 234 ~~~l~~~ 240 (335)
T COG1413 234 LLALGEI 240 (335)
T ss_pred HHHhccc
Confidence 6665543
No 109
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.0034 Score=70.90 Aligned_cols=267 Identities=13% Similarity=0.082 Sum_probs=172.5
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhc-CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHH
Q 005598 403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 481 (689)
Q Consensus 403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~-g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~ 481 (689)
.-.++.+++..++.++.++..|+.++..+.-.. ....+... .+++.|..+-...+++|+.+.+.+|..|..-...|.
T Consensus 173 ~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~--~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl 250 (885)
T KOG2023|consen 173 NIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ--TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKL 250 (885)
T ss_pred HHhHHHHHHHHhCCChhHHHHHHhhhhheeecC--cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhc
Confidence 457899999999999999999999998776532 33333332 466667677777889999999999987753211111
Q ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhh--CChHHHHHhhcCCC------------------
Q 005598 482 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS--GAIGPLVDLLGNGT------------------ 541 (689)
Q Consensus 482 ~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~--g~I~~Lv~LL~~~~------------------ 541 (689)
.---.+.++.++..-++.+.++...|+.....++..+-.+..+... ..+|.|+.-+.-.+
T Consensus 251 ~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDr 330 (885)
T KOG2023|consen 251 VPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDR 330 (885)
T ss_pred ccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCch
Confidence 1111256777777777888889999999999998877666655543 66676665443110
Q ss_pred --------------------------------------HHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-----
Q 005598 542 --------------------------------------PRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM----- 578 (689)
Q Consensus 542 --------------------------------------~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL----- 578 (689)
...++..+.+|--|+ .+....+++.++.+|
T Consensus 331 eeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLa-------nvf~~elL~~l~PlLk~~L~ 403 (885)
T KOG2023|consen 331 EEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLA-------NVFGDELLPILLPLLKEHLS 403 (885)
T ss_pred hhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHH-------HhhHHHHHHHHHHHHHHHcC
Confidence 112232233332222 123445566666655
Q ss_pred CCChHHHHHHHHHHHHHhCCchhHHHHHhc--CcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCH-hhHHHHHhCCChHH
Q 005598 579 DPAAGMVDKAVAVLANLATIPDGRVAIGQE--NGIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPP 655 (689)
Q Consensus 579 ~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~--g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~-~~~~~lv~~g~i~~ 655 (689)
+++..++|.++-+|+.+|.. +-+-+... ..+|.|+.+|..+.+.++.-.||+|...+..-- +..+.... .++..
T Consensus 404 ~~~W~vrEagvLAlGAIAEG--cM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~-pvL~~ 480 (885)
T KOG2023|consen 404 SEEWKVREAGVLALGAIAEG--CMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK-PVLEG 480 (885)
T ss_pred cchhhhhhhhHHHHHHHHHH--HhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH-HHHHH
Confidence 45567788888888888751 11223322 257899999999999999999999977654321 11111111 23555
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHhhcC
Q 005598 656 LVALSQSGTPRAKEKAQALLSYFRNQ 681 (689)
Q Consensus 656 L~~LL~~~~~~vr~~A~~lL~~L~~~ 681 (689)
|+.-+..++.++++.|..++..+...
T Consensus 481 ll~~llD~NK~VQEAAcsAfAtleE~ 506 (885)
T KOG2023|consen 481 LLRRLLDSNKKVQEAACSAFATLEEE 506 (885)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 66666778899999999988877643
No 110
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.41 E-value=0.00098 Score=67.83 Aligned_cols=182 Identities=20% Similarity=0.188 Sum_probs=111.6
Q ss_pred hcCCCHHHHHHHHHHHHHhhccC--cccHHHHHhc--CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCC
Q 005598 413 LKSTSLDTQREATAELRLLAKHN--MDNRMVIANC--GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANA 488 (689)
Q Consensus 413 L~s~~~~~q~~Al~~L~~La~~s--~~nr~~i~~~--g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~ 488 (689)
-.+.+++.+..|+..|+.+...+ ......+... ..+..++..+.+....+...|+.+|..|+..-...-.-.-...
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 35789999999999999998876 2333333331 4556666777666778889999999998743222111113357
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchH-HHHHHHH
Q 005598 489 IEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE-NKARIVQ 567 (689)
Q Consensus 489 l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~-n~~~lv~ 567 (689)
++.|+..+.++...++..|..+|..+...-.....+ .++.+...+.+.++.++..++..|..+..... ....+-.
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 889999999988899999999999887643311111 15666677788899999999999888766433 1111111
Q ss_pred ----hCcHHHHHHhc-CCChHHHHHHHHHHHHHhCC
Q 005598 568 ----AGAVKHLVDLM-DPAAGMVDKAVAVLANLATI 598 (689)
Q Consensus 568 ----~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~ 598 (689)
..+++.+...+ |.+.++.+.|-.++..+...
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 44667777777 78889999888888888653
No 111
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.38 E-value=0.00037 Score=51.03 Aligned_cols=41 Identities=34% Similarity=0.447 Sum_probs=38.1
Q ss_pred CchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhh
Q 005598 598 IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 638 (689)
Q Consensus 598 ~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~ 638 (689)
+++++..+++.|+++.|+++|.+.++.+++.|+++|+||++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 35788999999999999999999999999999999999984
No 112
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.37 E-value=0.028 Score=63.37 Aligned_cols=239 Identities=19% Similarity=0.238 Sum_probs=160.6
Q ss_pred hhHHHHHHHHh----------cCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCC-----CHHHHHHHH
Q 005598 403 ETQVRKLVEDL----------KSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-----ETKIQENAV 467 (689)
Q Consensus 403 ~~~V~~Lv~~L----------~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~-----~~~v~~~Al 467 (689)
...+..|+++- ...+..+..+|+++|.|+...++..|..+.+.|..+.++..|+.. +.++.....
T Consensus 21 ~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~ 100 (446)
T PF10165_consen 21 EEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDS 100 (446)
T ss_pred HHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHH
Confidence 45566666665 245788889999999999999999999999999999999999875 678888889
Q ss_pred HHHHHhhc-CCccHHHHHHc-CCHHHHHHHHcC-----------------CCHHHHHHHHHHHHhcccCchhHHHHHhhC
Q 005598 468 TALLNLSI-NDNNKSAIANA-NAIEPLIHVLQT-----------------GSPEARENAAATLFSLSVIEDNKIKIGRSG 528 (689)
Q Consensus 468 ~aL~nLs~-~~~~k~~i~~~-g~l~~Lv~lL~s-----------------~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g 528 (689)
++|.-++. ....+..+++. +++..|+..|.. ........++.+++|+.........-....
T Consensus 101 RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~ 180 (446)
T PF10165_consen 101 RLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSP 180 (446)
T ss_pred HHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhH
Confidence 99887764 45566666554 788877776531 134466778899999976433221101123
Q ss_pred ChHHHHHhhc-------C--CCHHHHHHHHHHHHhhhhch-HH-------HH----HHHHhCcHHHHHHhcC------CC
Q 005598 529 AIGPLVDLLG-------N--GTPRGKKDAATALFNLSIYH-EN-------KA----RIVQAGAVKHLVDLMD------PA 581 (689)
Q Consensus 529 ~I~~Lv~LL~-------~--~~~~v~~~Al~aL~nLs~~~-~n-------~~----~lv~~G~v~~Lv~LL~------~~ 581 (689)
.++.|+.+|. . ........++.+|.|+=... .. .. .......+..|+.+|+ ..
T Consensus 181 ~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~ 260 (446)
T PF10165_consen 181 SIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEA 260 (446)
T ss_pred HHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCc
Confidence 3444443332 1 13466777888888873211 11 00 0122346777777762 11
Q ss_pred ---hHHHHHHHHHHHHHhCC-chhHHHHHh--------------cC--cHHHHHHHhccCCHHHHHHHHHHHHHHhhCCH
Q 005598 582 ---AGMVDKAVAVLANLATI-PDGRVAIGQ--------------EN--GIPVLVEVVELGSARGKENAAAALLQLCTNSS 641 (689)
Q Consensus 582 ---~~v~e~Al~~L~nLa~~-~e~r~~i~~--------------~g--~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~ 641 (689)
.......+.+|..++.. ...|..+.. .| .-..|++++.+..+.++..+...|+.||..+.
T Consensus 261 ~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~ 340 (446)
T PF10165_consen 261 LKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDA 340 (446)
T ss_pred ccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhH
Confidence 24566778888888885 444555532 12 35689999998889999999999999998765
No 113
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.048 Score=64.52 Aligned_cols=110 Identities=21% Similarity=0.260 Sum_probs=85.1
Q ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 005598 405 QVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 483 (689)
Q Consensus 405 ~V~~Lv~~L~-s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i 483 (689)
..+.++..|+ ..++.+|.-|+..+..++. +..+-..++..|.+..|+.+|.+ -+..++.++.+|..|+.+.+....-
T Consensus 1772 ~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA 1849 (2235)
T KOG1789|consen 1772 NFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEA 1849 (2235)
T ss_pred ccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHH
Confidence 4455666666 3567788889998888776 45677778888999999999976 5677889999999998877766666
Q ss_pred HHcCCHHHHHHHHcC-CCHHHHHHHHHHHHhccc
Q 005598 484 ANANAIEPLIHVLQT-GSPEARENAAATLFSLSV 516 (689)
Q Consensus 484 ~~~g~l~~Lv~lL~s-~~~~~~~~Aa~aL~nLs~ 516 (689)
++.|++..+..++-. ..++.|..|+..+..|..
T Consensus 1850 ~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1850 LEHGGLMYILSILCLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred HhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhh
Confidence 777888888877654 458888888888887754
No 114
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.30 E-value=0.0024 Score=64.92 Aligned_cols=181 Identities=17% Similarity=0.091 Sum_probs=114.6
Q ss_pred cCCCHHHHHHHHHHHHhcccCc---hhHHHHHhh--CChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcH
Q 005598 497 QTGSPEARENAAATLFSLSVIE---DNKIKIGRS--GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAV 571 (689)
Q Consensus 497 ~s~~~~~~~~Aa~aL~nLs~~~---~~k~~I~~~--g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v 571 (689)
.+.+.+.+..|+..|..+.... .....+... .++..+...+.+....+.+.|+.++..|+..-.....-.-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 4567888888888888886533 233333332 56677777777777889999999999998854444333456688
Q ss_pred HHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHH--
Q 005598 572 KHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVL-- 648 (689)
Q Consensus 572 ~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv-- 648 (689)
+.|++.+ +....+.+.|..+|..++..-..-..+ .++.+...+.+.++.++..++..|..+....+.....+-
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~ 172 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKS 172 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence 8999988 666778889999999988854411111 146667777889999999999999988776551111111
Q ss_pred --hCCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 005598 649 --QEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 681 (689)
Q Consensus 649 --~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~~ 681 (689)
-...++.|...+.+.++.+|+.|..++..+..+
T Consensus 173 ~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 173 AFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 134677888899999999999999998888654
No 115
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.25 E-value=0.022 Score=63.31 Aligned_cols=151 Identities=18% Similarity=0.072 Sum_probs=97.9
Q ss_pred hHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 005598 404 TQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 482 (689)
Q Consensus 404 ~~V~~Lv~~L~-s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~ 482 (689)
..++.|+..|. ..+.++...++..+. .... ..++..|+..|...++.++..++.+|..+
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~--~~~~---------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i--------- 113 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALL--AQED---------ALDLRSVLAVLQAGPEGLCAGIQAALGWL--------- 113 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHh--ccCC---------hHHHHHHHHHhcCCCHHHHHHHHHHHhcC---------
Confidence 45666777774 445555444333332 1211 11377888888877777888888887654
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHH
Q 005598 483 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 562 (689)
Q Consensus 483 i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~ 562 (689)
......+.|+.+|++.++.++..++.++... .....+.|..+|++.++.++..|+.+|..|-
T Consensus 114 -~~~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~------ 175 (410)
T TIGR02270 114 -GGRQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELP------ 175 (410)
T ss_pred -CchHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhc------
Confidence 2335667788888888888887777666542 2235677888888888888888888887763
Q ss_pred HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHh
Q 005598 563 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLA 596 (689)
Q Consensus 563 ~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa 596 (689)
...+++.|...+ +.+..+...|+..|..+.
T Consensus 176 ----~~~a~~~L~~al~d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 176 ----RRLSESTLRLYLRDSDPEVRFAALEAGLLAG 206 (410)
T ss_pred ----cccchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 234555566666 566777777787776653
No 116
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.0013 Score=72.45 Aligned_cols=182 Identities=12% Similarity=0.109 Sum_probs=140.8
Q ss_pred cHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhccc-CchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhh
Q 005598 479 NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 557 (689)
Q Consensus 479 ~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~-~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~ 557 (689)
-|.-+.+....++|+++|..++.-+.--+...++|+.. ...-+..+...|+|..|+.++.+.+...+.+..|.|.+|..
T Consensus 423 LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmy 502 (743)
T COG5369 423 LRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMY 502 (743)
T ss_pred HHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhh
Confidence 36667778899999999999877777778888898865 56668888899999999999998888999999999999988
Q ss_pred chH--HHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCc----hhHHHHHhcC----cHHHHHHHhccCCHHHH
Q 005598 558 YHE--NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIP----DGRVAIGQEN----GIPVLVEVVELGSARGK 626 (689)
Q Consensus 558 ~~~--n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~----e~r~~i~~~g----~v~~Lv~lL~s~s~~~~ 626 (689)
+.. .+-++++.-++..++++. ++.-.+.+.++.+|.|+..+. +.+..+.... ....|++.+...+|...
T Consensus 503 ncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i 582 (743)
T COG5369 503 NCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEI 582 (743)
T ss_pred cCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhh
Confidence 543 456778888899999998 788899999999999987622 1222222211 34667777788888888
Q ss_pred HHHHHHHHHHhhCCHhhHHHHHh-CCChHHHHHhh
Q 005598 627 ENAAAALLQLCTNSSRFCSMVLQ-EGAVPPLVALS 660 (689)
Q Consensus 627 e~Av~aL~~L~~~~~~~~~~lv~-~g~i~~L~~LL 660 (689)
+..+.+|.+++.-++.....+.+ ...+..+..+|
T Consensus 583 ~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 583 LEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred hhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence 88899999988887766666654 44555555544
No 117
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.21 E-value=0.018 Score=62.16 Aligned_cols=160 Identities=31% Similarity=0.379 Sum_probs=114.9
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHH
Q 005598 446 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG 525 (689)
Q Consensus 446 g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~ 525 (689)
..++.++.++.+.+..++..|...|..+ ....+++.+..+|.+.+..+|..|+.+|..+-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~----------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~---------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGEL----------GSEEAVPLLRELLSDEDPRVRDAAADALGELG---------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhh----------chHHHHHHHHHHhcCCCHHHHHHHHHHHHccC----------
Confidence 4788889999988888998888886554 23457899999999999999999999887762
Q ss_pred hhCChHHHHHhhc-CCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhcCCChHHHHHHHHHH-HHHhCCchhH-
Q 005598 526 RSGAIGPLVDLLG-NGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVL-ANLATIPDGR- 602 (689)
Q Consensus 526 ~~g~I~~Lv~LL~-~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL~~~~~v~e~Al~~L-~nLa~~~e~r- 602 (689)
....++.|+.+|. +.+..++..+..+|..+-. ..++..|+.++....... +...+ ..+. ..|
T Consensus 103 ~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~--a~~~~~~~~~---~~r~ 167 (335)
T COG1413 103 DPEAVPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGS--AAAALDAALL---DVRA 167 (335)
T ss_pred ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhh--hhhhccchHH---HHHH
Confidence 3467899999999 5889999999999988733 334677777773322111 11111 0000 111
Q ss_pred ---HHH---HhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCC
Q 005598 603 ---VAI---GQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 640 (689)
Q Consensus 603 ---~~i---~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~ 640 (689)
..+ .....++.+...+......++..|+.+|..+....
T Consensus 168 ~a~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~ 211 (335)
T COG1413 168 AAAEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN 211 (335)
T ss_pred HHHHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch
Confidence 111 12346788999999888999999999999888765
No 118
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.0026 Score=70.23 Aligned_cols=183 Identities=15% Similarity=0.130 Sum_probs=132.8
Q ss_pred HHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-CccHHHHHHcCCHHHHHHHHcCCCH
Q 005598 423 EATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLIHVLQTGSP 501 (689)
Q Consensus 423 ~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~-~~~k~~i~~~g~l~~Lv~lL~s~~~ 501 (689)
.++..|..+++.-..-|..+.++.+++.|+.+|..++..+.-.+...++|+... ..-+..+.+.+.+..|+.++.+.+.
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 455566777765445577778889999999999887777777778888888644 5568888999999999999999899
Q ss_pred HHHHHHHHHHHhcccCchh--HHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchH----HHHHHHHhC----cH
Q 005598 502 EARENAAATLFSLSVIEDN--KIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE----NKARIVQAG----AV 571 (689)
Q Consensus 502 ~~~~~Aa~aL~nLs~~~~~--k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~----n~~~lv~~G----~v 571 (689)
.++.+..|++..+-.+.+. +-.+...-++..++.+..++.-.++..++..|.|++.+.. .+.-+++.. ..
T Consensus 488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylf 567 (743)
T COG5369 488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLF 567 (743)
T ss_pred hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHH
Confidence 9999999999999875443 4455566778999999999999999999999999987322 222222222 23
Q ss_pred HHHHHhcCC-ChHHHHHHHHHHHHHhCCchhHHHH
Q 005598 572 KHLVDLMDP-AAGMVDKAVAVLANLATIPDGRVAI 605 (689)
Q Consensus 572 ~~Lv~LL~~-~~~v~e~Al~~L~nLa~~~e~r~~i 605 (689)
..|++.+.. ++-..+..+.+|.+++.+.+....+
T Consensus 568 k~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~ 602 (743)
T COG5369 568 KRLIDKYEENNPMEILEGCYILVRNAACDDTLDYI 602 (743)
T ss_pred HHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHH
Confidence 334444432 3333456688888887766654433
No 119
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.00022 Score=73.21 Aligned_cols=47 Identities=17% Similarity=0.116 Sum_probs=43.9
Q ss_pred ccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCC
Q 005598 102 CCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT 148 (689)
Q Consensus 102 ~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~ 148 (689)
.|+||+.-|.-||.++|+|.||.-||+--...+..+||+||.++++.
T Consensus 9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 59999999999999999999999999998887778899999999875
No 120
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.11 E-value=0.0027 Score=54.07 Aligned_cols=86 Identities=30% Similarity=0.406 Sum_probs=69.8
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHh
Q 005598 448 INILVDML-HSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGR 526 (689)
Q Consensus 448 I~~Lv~lL-~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~ 526 (689)
|+.|+..| ++.++.++..++.+|+.+. ....++.|+.+++++++.++..|+.+|..+- .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 67899988 7889999999999998542 2245899999999999999999999999872 4
Q ss_pred hCChHHHHHhhcCCC-HHHHHHHHHHHH
Q 005598 527 SGAIGPLVDLLGNGT-PRGKKDAATALF 553 (689)
Q Consensus 527 ~g~I~~Lv~LL~~~~-~~v~~~Al~aL~ 553 (689)
..+++.|.+++.+.+ ..++..|+.+|.
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 568999999998764 556788887763
No 121
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.08 E-value=0.048 Score=61.76 Aligned_cols=268 Identities=15% Similarity=0.146 Sum_probs=165.2
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHH-HHHHHHHhhcCCccHH
Q 005598 403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN-AVTALLNLSINDNNKS 481 (689)
Q Consensus 403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~-Al~aL~nLs~~~~~k~ 481 (689)
....+.+.+.+.+.....+..+...+..+..+. .-..+.+.+++..|...+.......... +.-+...++.+-.
T Consensus 133 ~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg--- 207 (569)
T KOG1242|consen 133 EYVLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG--- 207 (569)
T ss_pred HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC---
Confidence 456778888888888888888999998887743 3445556688888888887654433332 2222222211100
Q ss_pred HHHHcCCHHHHHHHHc---CCCHHHHHHHHHHHHhccc-CchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhh
Q 005598 482 AIANANAIEPLIHVLQ---TGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 557 (689)
Q Consensus 482 ~i~~~g~l~~Lv~lL~---s~~~~~~~~Aa~aL~nLs~-~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~ 557 (689)
...+...++.+-.+|. +....+|..|..+...+-. .+.... .-.++.++.-+.....+.+..++..|..|+.
T Consensus 208 ~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV----K~llpsll~~l~~~kWrtK~aslellg~m~~ 283 (569)
T KOG1242|consen 208 PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV----KLLLPSLLGSLLEAKWRTKMASLELLGAMAD 283 (569)
T ss_pred CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 1123344444444443 4556777777766655522 111111 1234444444444467889999999999988
Q ss_pred chHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHH-----------------------------HH--
Q 005598 558 YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRV-----------------------------AI-- 605 (689)
Q Consensus 558 ~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~-----------------------------~i-- 605 (689)
....+-...-..++|.|.+.| +...++...+..+|..++..-++.. .+
T Consensus 284 ~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~ 363 (569)
T KOG1242|consen 284 CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVA 363 (569)
T ss_pred hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeee
Confidence 888788888899999999999 7788888888887777654222111 00
Q ss_pred -HhcCcHHHHHHHhcc----CCHHHHHHHHHHHHHHhhCCH--hhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHH-HH
Q 005598 606 -GQENGIPVLVEVVEL----GSARGKENAAAALLQLCTNSS--RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALL-SY 677 (689)
Q Consensus 606 -~~~g~v~~Lv~lL~s----~s~~~~e~Av~aL~~L~~~~~--~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL-~~ 677 (689)
++.-.+..++.+|.+ .+...+..++.+++|+|.--+ ....-++ .-.+|.|-..+....|++|..|..+| .+
T Consensus 364 ~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl-~~Llp~lk~~~~d~~PEvR~vaarAL~~l 442 (569)
T KOG1242|consen 364 EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL-PSLLPGLKENLDDAVPEVRAVAARALGAL 442 (569)
T ss_pred eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhH-HHHhhHHHHHhcCCChhHHHHHHHHHHHH
Confidence 112234555555543 355677889999999998653 2111111 23566666666666799999998888 44
Q ss_pred hhc
Q 005598 678 FRN 680 (689)
Q Consensus 678 L~~ 680 (689)
+++
T Consensus 443 ~e~ 445 (569)
T KOG1242|consen 443 LER 445 (569)
T ss_pred HHH
Confidence 443
No 122
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.08 E-value=0.048 Score=60.98 Aligned_cols=265 Identities=18% Similarity=0.124 Sum_probs=135.6
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc----
Q 005598 404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNN---- 479 (689)
Q Consensus 404 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~---- 479 (689)
...+.|-..|++.-..++.++++.+..|+..+- -..+. ...|..|-.+|.+.....+..|+++|..|+.....
T Consensus 264 q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~v 340 (898)
T COG5240 264 QLRPFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSV 340 (898)
T ss_pred HHHHHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeee
Confidence 456677777877667889999999999877541 11122 14677888889998999999999999999853211
Q ss_pred -----HHHHHHcC---CHHHHHHHHcCCCHHHHHHHHHHHHhccc--CchhHHHHHhhCChHHHHHhhcCCCHHHHHHHH
Q 005598 480 -----KSAIANAN---AIEPLIHVLQTGSPEARENAAATLFSLSV--IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAA 549 (689)
Q Consensus 480 -----k~~i~~~g---~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~--~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al 549 (689)
-..|-+.+ ..-++..+|+.|+.+....-+..|-+... .+..+..++ .++..|.-++ ++-+..-+
T Consensus 341 cN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~i--da~rsLsl~F----p~k~~s~l 414 (898)
T COG5240 341 CNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAI--DALRSLSLLF----PSKKLSYL 414 (898)
T ss_pred cChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeH--HHHHHHHhhC----cHHHHHHH
Confidence 12222221 23345566666665543333333333221 111111110 0111111000 01111111
Q ss_pred HHHHhhhhchHHHHHHHHhCcHHHHHHhcCCChHHHHHHHHHHHHHhCCchhHHHHH-------hcC--------cHHHH
Q 005598 550 TALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIG-------QEN--------GIPVL 614 (689)
Q Consensus 550 ~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL~~~~~v~e~Al~~L~nLa~~~e~r~~i~-------~~g--------~v~~L 614 (689)
..|.+...+...- -.+.-.|.++.++++..++..+.|+..|+......+..+..+ ++| .|..+
T Consensus 415 ~FL~~~L~~eGg~--eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhI 492 (898)
T COG5240 415 DFLGSSLLQEGGL--EFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHI 492 (898)
T ss_pred HHHHHHHHhcccc--hHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHH
Confidence 1111111110000 001112334444444444555666555555433222211110 111 13333
Q ss_pred HHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCc
Q 005598 615 VEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 682 (689)
Q Consensus 615 v~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~~~ 682 (689)
..-+--.+.-++..|+.+|...+.+-. ..+....+...|..++...++.+|..|..+|+.++..+
T Consensus 493 yNR~iLEN~ivRsaAv~aLskf~ln~~---d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~d 557 (898)
T COG5240 493 YNRLILENNIVRSAAVQALSKFALNIS---DVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLSD 557 (898)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhccCcc---ccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhhh
Confidence 333333556677788888877666533 12223345567778888889999999999999998644
No 123
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.017 Score=64.32 Aligned_cols=236 Identities=14% Similarity=0.081 Sum_probs=164.6
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHH
Q 005598 446 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIAN-ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKI 524 (689)
Q Consensus 446 g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~-~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I 524 (689)
++||.|-.-+...++..+...+..|..|-.-+ ..+.+.- ...++.|..+|.+.+.+++..+-.+|.++-..-.++...
T Consensus 167 ~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P-~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s 245 (675)
T KOG0212|consen 167 EFIPLLRERIYVINPMTRQFLVSWLYVLDSVP-DLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS 245 (675)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC-cHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc
Confidence 56777766666678888888888887663222 2333332 367888899999999999877666665543211122222
Q ss_pred Hhh-CChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhcCCChH--HHHHHH---HHHHHHhCC
Q 005598 525 GRS-GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAG--MVDKAV---AVLANLATI 598 (689)
Q Consensus 525 ~~~-g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL~~~~~--v~e~Al---~~L~nLa~~ 598 (689)
.+. ..++.++.-+.+..+.++..|+..|.......+......-.|++..++..+.++.. +.+.+. +.|..++..
T Consensus 246 ~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~ 325 (675)
T KOG0212|consen 246 MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSS 325 (675)
T ss_pred cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhh
Confidence 232 67888999999999999999999998887766666666668888888888843332 333222 345556665
Q ss_pred chhHHHHHhcC-cHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHH
Q 005598 599 PDGRVAIGQEN-GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 677 (689)
Q Consensus 599 ~e~r~~i~~~g-~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~ 677 (689)
+...+. ++.| .+..|.+.+......++-.+..-+..|-...+. +-.+.....++.|+.-+.+.++.+...+.++|..
T Consensus 326 ~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~-ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~ 403 (675)
T KOG0212|consen 326 ERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPG-QLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLAS 403 (675)
T ss_pred hhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcc-hhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHH
Confidence 555555 4444 578889999888899998888888887776652 2223346788999998988889999999999988
Q ss_pred hhcCcCC
Q 005598 678 FRNQRHG 684 (689)
Q Consensus 678 L~~~~~~ 684 (689)
+....+.
T Consensus 404 i~~s~~~ 410 (675)
T KOG0212|consen 404 ICSSSNS 410 (675)
T ss_pred HhcCccc
Confidence 8876655
No 124
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.99 E-value=0.0052 Score=52.32 Aligned_cols=85 Identities=29% Similarity=0.425 Sum_probs=67.6
Q ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHH
Q 005598 489 IEPLIHVL-QTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ 567 (689)
Q Consensus 489 l~~Lv~lL-~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~ 567 (689)
|+.|++.| +++++.+|..|+.+|..+- ...+++.|+.++++.++.++..|+.+|..+. .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 57889988 7888999999999999652 3366999999999999999999999999872 3
Q ss_pred hCcHHHHHHhc-CC-ChHHHHHHHHHHH
Q 005598 568 AGAVKHLVDLM-DP-AAGMVDKAVAVLA 593 (689)
Q Consensus 568 ~G~v~~Lv~LL-~~-~~~v~e~Al~~L~ 593 (689)
..+++.|.+++ ++ +..+...|+.+|+
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 45888999988 43 3445677777764
No 125
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.92 E-value=0.00066 Score=74.07 Aligned_cols=51 Identities=18% Similarity=0.319 Sum_probs=44.6
Q ss_pred CccccccccccccCceecCCCccccHHHHHHHHhc----CCCCCCCCCCcCCCCC
Q 005598 99 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL----GLFVCPKTRQTLAHTT 149 (689)
Q Consensus 99 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~----~~~~cP~t~~~l~~~~ 149 (689)
.+..|-+|.+.-+||+...|.|+|||-||.+|... .+-+||.|..+|+.+.
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl 589 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL 589 (791)
T ss_pred CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence 35789999999999999999999999999998754 3467999999998763
No 126
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.00055 Score=70.20 Aligned_cols=58 Identities=16% Similarity=0.181 Sum_probs=47.1
Q ss_pred cccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCCccHHHHHHH
Q 005598 101 FCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALI 160 (689)
Q Consensus 101 f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~pn~~l~~~i 160 (689)
|.|-||.+.|.+||++.|||+||..|-.+.++.+ ..|++|++.... .+-+...|....
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~-~~c~vC~~~t~g-~~~~akeL~~~L 299 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKG-EKCYVCSQQTHG-SFNVAKELLVSL 299 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccccccC-Ccceeccccccc-ccchHHHHHHHH
Confidence 7899999999999999999999999999999876 569999987654 344444444433
No 127
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.00052 Score=79.14 Aligned_cols=47 Identities=26% Similarity=0.584 Sum_probs=41.7
Q ss_pred CCccccccccccccC-----ceecCCCccccHHHHHHHHhcCCCCCCCCCCcC
Q 005598 98 PSDFCCPLSLELMTD-----PVIVASGQTYERAFIKKWIDLGLFVCPKTRQTL 145 (689)
Q Consensus 98 p~~f~CpI~~~lm~d-----PV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l 145 (689)
..+-.|+||.+.|.. |-.++|||.|...|+.+|+++. .+||.||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~-qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQ-QTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHh-CcCCcchhhh
Confidence 346789999999999 7789999999999999999984 7899999843
No 128
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.082 Score=55.56 Aligned_cols=236 Identities=14% Similarity=0.162 Sum_probs=162.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc-c----HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHH
Q 005598 448 INILVDMLHSSETKIQENAVTALLNLSINDN-N----KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKI 522 (689)
Q Consensus 448 I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~-~----k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~ 522 (689)
.+.|-.=|..++..|+.-++..++-+..+.+ | ...++.++.++.++..+...+.++...|...|..++..+..-.
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaale 163 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALE 163 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHH
Confidence 3344444445666777777777666654322 1 3345578999999999999999999999999999999888888
Q ss_pred HHHhhCChHHH--HHhhcCCCHHHHHHHHHHHHhhhh-chHHHHHHHHhCcHHHHHHhcCC--ChHHHHHHHHHHHHHhC
Q 005598 523 KIGRSGAIGPL--VDLLGNGTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLMDP--AAGMVDKAVAVLANLAT 597 (689)
Q Consensus 523 ~I~~~g~I~~L--v~LL~~~~~~v~~~Al~aL~nLs~-~~~n~~~lv~~G~v~~Lv~LL~~--~~~v~e~Al~~L~nLa~ 597 (689)
.|.+...+..+ +.+--..+.-++...+..+..+.+ .++.....-..|.+..|..-|.. +.-+.-.++.....|+.
T Consensus 164 aiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLae 243 (524)
T KOG4413|consen 164 AIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAE 243 (524)
T ss_pred HhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHH
Confidence 88777666554 333233455566677777777766 55555666678888888877733 33345678888899999
Q ss_pred CchhHHHHHhcCcHHHHHHHhcc--CCHHHHHHHHHHHHHHhhC------CH-hhHHHHHhCCChHHHHHhhhcCCHHHH
Q 005598 598 IPDGRVAIGQENGIPVLVEVVEL--GSARGKENAAAALLQLCTN------SS-RFCSMVLQEGAVPPLVALSQSGTPRAK 668 (689)
Q Consensus 598 ~~e~r~~i~~~g~v~~Lv~lL~s--~s~~~~e~Av~aL~~L~~~------~~-~~~~~lv~~g~i~~L~~LL~~~~~~vr 668 (689)
..-+++.+.+.|.+..+..++.. .+|-.+..+...-..+... .+ ..+..+. -++..-++.+...++.+.
T Consensus 244 teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaiceali--iaidgsfEmiEmnDpdai 321 (524)
T KOG4413|consen 244 TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALI--IAIDGSFEMIEMNDPDAI 321 (524)
T ss_pred HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHH--HHHHhhHHhhhcCCchHH
Confidence 99999999999999999999864 3455555555444433322 11 1122221 235556677788889999
Q ss_pred HHHHHHHHHhhcCcCCC
Q 005598 669 EKAQALLSYFRNQRHGN 685 (689)
Q Consensus 669 ~~A~~lL~~L~~~~~~~ 685 (689)
+.|...|..|-...+|.
T Consensus 322 eaAiDalGilGSnteGa 338 (524)
T KOG4413|consen 322 EAAIDALGILGSNTEGA 338 (524)
T ss_pred HHHHHHHHhccCCcchh
Confidence 99999999888777664
No 129
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.13 Score=59.12 Aligned_cols=219 Identities=14% Similarity=0.184 Sum_probs=136.4
Q ss_pred chhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhcC-Cc
Q 005598 401 GIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSIN-DN 478 (689)
Q Consensus 401 ~~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s-~~~~v~~~Al~aL~nLs~~-~~ 478 (689)
+....++.|++.|.++++.+|..|+..|+.||+.+|.|.-.+ -|.+..+|.. .+.=+....+.+.++|+-- +.
T Consensus 178 Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPR 252 (877)
T KOG1059|consen 178 ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR 252 (877)
T ss_pred hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCch
Confidence 345678999999999999999999999999999988775443 4677777744 3333445566777777532 22
Q ss_pred cHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHhc--ccC-chhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHh
Q 005598 479 NKSAIANANAIEPLIHVLQTGS-PEARENAAATLFSL--SVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFN 554 (689)
Q Consensus 479 ~k~~i~~~g~l~~Lv~lL~s~~-~~~~~~Aa~aL~nL--s~~-~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~n 554 (689)
- ....+++|..++.+.. ..+...++.++... +.. ++.-..+ .-++..|-.++.+.++..+..++.|+..
T Consensus 253 L-----gKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~K 325 (877)
T KOG1059|consen 253 L-----GKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSK 325 (877)
T ss_pred h-----hhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHH
Confidence 2 2246788888887764 44555555554433 221 1111111 1246666677778899999999999999
Q ss_pred hhhchHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCC-HHHHHHHHHH
Q 005598 555 LSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGS-ARGKENAAAA 632 (689)
Q Consensus 555 Ls~~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s-~~~~e~Av~a 632 (689)
+...+.-.... --..+++.| +.+..+.-+|+.+|.-+... ++-.+ ++..|+..+...+ ..-+..-+.-
T Consensus 326 I~ktHp~~Vqa----~kdlIlrcL~DkD~SIRlrALdLl~gmVsk-kNl~e-----IVk~LM~~~~~ae~t~yrdell~~ 395 (877)
T KOG1059|consen 326 ILKTHPKAVQA----HKDLILRCLDDKDESIRLRALDLLYGMVSK-KNLME-----IVKTLMKHVEKAEGTNYRDELLTR 395 (877)
T ss_pred HhhhCHHHHHH----hHHHHHHHhccCCchhHHHHHHHHHHHhhh-hhHHH-----HHHHHHHHHHhccchhHHHHHHHH
Confidence 88755432211 123556667 66788889999999887652 22222 2344444443332 2444455555
Q ss_pred HHHHhhCCH
Q 005598 633 LLQLCTNSS 641 (689)
Q Consensus 633 L~~L~~~~~ 641 (689)
+..+|+.+.
T Consensus 396 II~iCS~sn 404 (877)
T KOG1059|consen 396 IISICSQSN 404 (877)
T ss_pred HHHHhhhhh
Confidence 566666543
No 130
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.13 Score=59.38 Aligned_cols=274 Identities=13% Similarity=0.085 Sum_probs=171.4
Q ss_pred hhHHHHHHHHhcCCCHH-HHHHHHHHHHHhhccCcccHHHHHhc-CcHHHHHHhhcC--CCHHHHHHHHHHHHHhhcC-C
Q 005598 403 ETQVRKLVEDLKSTSLD-TQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHS--SETKIQENAVTALLNLSIN-D 477 (689)
Q Consensus 403 ~~~V~~Lv~~L~s~~~~-~q~~Al~~L~~La~~s~~nr~~i~~~-g~I~~Lv~lL~s--~~~~v~~~Al~aL~nLs~~-~ 477 (689)
.+.+..|+.....+.+. ++..++..|.-++.+- .-....... .++-.++.=.++ .+..++..|+.+|.|--.- .
T Consensus 128 p~li~~lv~nv~~~~~~~~k~~slealGyice~i-~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~ 206 (859)
T KOG1241|consen 128 PELIVTLVSNVGEEQASMVKESSLEALGYICEDI-DPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTK 206 (859)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHHccC-CHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHH
Confidence 57788888888765544 6778888999888742 222333222 445555554433 4677899999999875311 1
Q ss_pred ccHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHhccc-CchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhh
Q 005598 478 NNKSAIAN-ANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL 555 (689)
Q Consensus 478 ~~k~~i~~-~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~-~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nL 555 (689)
.|-..=.+ .-.+...+..-++++.+++..|..+|..|.. +.+.-..-.....+..-+.-+++.+.++...+...=.++
T Consensus 207 ~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsti 286 (859)
T KOG1241|consen 207 ANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTI 286 (859)
T ss_pred HhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 11111111 1234445566677889999999999888754 333333323334455556667788888888888877777
Q ss_pred hhchHH----HHHHHH---------------hCcHHHHHHhc-C--C-----ChHHHHHHHHHHHHHhCCchhHHHHHhc
Q 005598 556 SIYHEN----KARIVQ---------------AGAVKHLVDLM-D--P-----AAGMVDKAVAVLANLATIPDGRVAIGQE 608 (689)
Q Consensus 556 s~~~~n----~~~lv~---------------~G~v~~Lv~LL-~--~-----~~~v~e~Al~~L~nLa~~~e~r~~i~~~ 608 (689)
|...-. -..+++ .+++|.|+++| + + +......|-.+|..++.+-. ..|+.
T Consensus 287 ceEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~--D~Iv~- 363 (859)
T KOG1241|consen 287 CEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVG--DDIVP- 363 (859)
T ss_pred HHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhc--ccchh-
Confidence 653211 011111 36788999988 2 1 12344555555655554211 11111
Q ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 005598 609 NGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 680 (689)
Q Consensus 609 g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~ 680 (689)
.+++.+-+-+++.+.+-++.|+.++..+..+....+..-+-.++++.++.++...+--+++-++|.|..+..
T Consensus 364 ~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d 435 (859)
T KOG1241|consen 364 HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIAD 435 (859)
T ss_pred hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHh
Confidence 334444445678899999999999999887766556555567899999999997777888889988776654
No 131
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.67 E-value=0.068 Score=63.51 Aligned_cols=198 Identities=15% Similarity=0.153 Sum_probs=140.5
Q ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHh-cccCchhHHHHHhhCChHHHHHhhcC-C--CHHHHHHHHHHHHhhh
Q 005598 481 SAIANANAIEPLIHVLQTGSPEARENAAATLFS-LSVIEDNKIKIGRSGAIGPLVDLLGN-G--TPRGKKDAATALFNLS 556 (689)
Q Consensus 481 ~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~n-Ls~~~~~k~~I~~~g~I~~Lv~LL~~-~--~~~v~~~Al~aL~nLs 556 (689)
..-...|.+|.++++|++...+++..-+.+=.. |+.++.++..+++.++-...+..|.. . +++-+..|+..|.-++
T Consensus 506 ~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv 585 (1387)
T KOG1517|consen 506 DLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIV 585 (1387)
T ss_pred hhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHH
Confidence 344456999999999999988887765544433 46677788888888777777777776 3 4577777888888887
Q ss_pred h-chHHHHHHHHhCcHHHHHHhcCC--ChHHHHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHH
Q 005598 557 I-YHENKARIVQAGAVKHLVDLMDP--AAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAA 632 (689)
Q Consensus 557 ~-~~~n~~~lv~~G~v~~Lv~LL~~--~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~a 632 (689)
. .+-.+....+.+.+..+++.|.+ ..-+..-++-+|+.|=. ..+.|=.=++.++...|..+|....++++..|+.+
T Consensus 586 ~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFA 665 (1387)
T KOG1517|consen 586 RNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFA 665 (1387)
T ss_pred cccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHH
Confidence 7 45667778889999999999943 23344556666666655 34445444678889999999999999999999999
Q ss_pred HHHHhhCC----HhhHHHH------------HhCCCh---HHHHHhhhcCCHHHHHHHHHHHHHh
Q 005598 633 LLQLCTNS----SRFCSMV------------LQEGAV---PPLVALSQSGTPRAKEKAQALLSYF 678 (689)
Q Consensus 633 L~~L~~~~----~~~~~~l------------v~~g~i---~~L~~LL~~~~~~vr~~A~~lL~~L 678 (689)
|..+..+. ++....+ ++..+. ..|+.+++.+++-++....-.|..+
T Consensus 666 Lgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~ 730 (1387)
T KOG1517|consen 666 LGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHF 730 (1387)
T ss_pred HHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 99988753 2111111 121122 3677788888887776655555444
No 132
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.65 E-value=0.0013 Score=68.53 Aligned_cols=54 Identities=17% Similarity=0.381 Sum_probs=43.3
Q ss_pred CCCccccccccccccC--cee--cCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCCc
Q 005598 97 IPSDFCCPLSLELMTD--PVI--VASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIP 152 (689)
Q Consensus 97 ~p~~f~CpI~~~lm~d--PV~--~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~p 152 (689)
-...|.||||+..|.. +.+ .+|||+|...+|.+-- ....||+|+.+++..+++|
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEE
Confidence 3567999999999954 333 4999999999999983 2356999999999887664
No 133
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.63 E-value=0.085 Score=59.81 Aligned_cols=242 Identities=15% Similarity=0.161 Sum_probs=149.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 005598 404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 483 (689)
Q Consensus 404 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i 483 (689)
..++.++....+....++..|......+...-+.... .-.+|.++.-+.....+....++..|..++.....+...
T Consensus 216 ~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV----K~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~ 291 (569)
T KOG1242|consen 216 PILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV----KLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSL 291 (569)
T ss_pred hhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHH
Confidence 4567777777777777887777766665442111100 012333333333335566778888998887666666667
Q ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHH
Q 005598 484 ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKA 563 (689)
Q Consensus 484 ~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~ 563 (689)
.....+|.+.+.|-+..++++..+..+|..++..-+|... .-.++.|++.+.+....+.. ++..|..-+. .
T Consensus 292 ~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI---~~~ip~Lld~l~dp~~~~~e-~~~~L~~ttF-----V 362 (569)
T KOG1242|consen 292 CLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI---QKIIPTLLDALADPSCYTPE-CLDSLGATTF-----V 362 (569)
T ss_pred HHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH---HHHHHHHHHHhcCcccchHH-HHHhhcceee-----e
Confidence 7789999999999999999999999999999875555442 14578888888776422222 2222221111 1
Q ss_pred HHHHhCcHHHHHHhc-----CCChHHHHHHHHHHHHHhCCchhHHHHHh--cCcHHHHHHHhccCCHHHHHHHHHHHHHH
Q 005598 564 RIVQAGAVKHLVDLM-----DPAAGMVDKAVAVLANLATIPDGRVAIGQ--ENGIPVLVEVVELGSARGKENAAAALLQL 636 (689)
Q Consensus 564 ~lv~~G~v~~Lv~LL-----~~~~~v~e~Al~~L~nLa~~~e~r~~i~~--~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L 636 (689)
..|++-.+..++.+| +.+..+...++.+..|+|.--+....+.. ...+|.|-..+....|++|..+..+|..+
T Consensus 363 ~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l 442 (569)
T KOG1242|consen 363 AEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGAL 442 (569)
T ss_pred eeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHH
Confidence 123445555566665 34566778899999999984433333332 12345555555556899999999999877
Q ss_pred hhCCHhhHHHHHhCCChHHHHHhhhc
Q 005598 637 CTNSSRFCSMVLQEGAVPPLVALSQS 662 (689)
Q Consensus 637 ~~~~~~~~~~lv~~g~i~~L~~LL~~ 662 (689)
-..-.... ..+.++.|.+.+..
T Consensus 443 ~e~~g~~~----f~d~~p~l~e~~~~ 464 (569)
T KOG1242|consen 443 LERLGEVS----FDDLIPELSETLTS 464 (569)
T ss_pred HHHHHhhc----ccccccHHHHhhcc
Confidence 65433111 14445555554433
No 134
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.48 E-value=0.0024 Score=54.17 Aligned_cols=47 Identities=26% Similarity=0.450 Sum_probs=34.2
Q ss_pred cccccccccccC-ceec-CCCccccHHHHHHHHhcC--CCCCCCCCCcCCC
Q 005598 101 FCCPLSLELMTD-PVIV-ASGQTYERAFIKKWIDLG--LFVCPKTRQTLAH 147 (689)
Q Consensus 101 f~CpI~~~lm~d-PV~~-~~G~ty~r~~I~~~l~~~--~~~cP~t~~~l~~ 147 (689)
-.||.|...=.| |++. .|||.|-..||.+|+... ..+||.||++...
T Consensus 33 g~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 33 GCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred cCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 345555444334 6554 799999999999999863 4679999998643
No 135
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.0018 Score=68.07 Aligned_cols=47 Identities=21% Similarity=0.492 Sum_probs=39.7
Q ss_pred CCccccccccccc-cCc------------eecCCCccccHHHHHHHHhcCCCCCCCCCCcC
Q 005598 98 PSDFCCPLSLELM-TDP------------VIVASGQTYERAFIKKWIDLGLFVCPKTRQTL 145 (689)
Q Consensus 98 p~~f~CpI~~~lm-~dP------------V~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l 145 (689)
-++-+|-||++-| .-| -.+||||.+--+|++.|+++. .+||.||.|+
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq-QTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ-QTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc-cCCCcccCcc
Confidence 3567899999764 433 579999999999999999976 7899999995
No 136
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.47 E-value=0.0062 Score=43.89 Aligned_cols=38 Identities=29% Similarity=0.527 Sum_probs=35.4
Q ss_pred ccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005598 437 DNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS 474 (689)
Q Consensus 437 ~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs 474 (689)
.++..+.+.|+++.|+.+|.+.+.+++..++++|.||+
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 47888999999999999999999999999999999986
No 137
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.46 E-value=0.24 Score=57.17 Aligned_cols=153 Identities=12% Similarity=0.102 Sum_probs=100.7
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCccc--HHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc-c
Q 005598 403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDN--RMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDN-N 479 (689)
Q Consensus 403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~n--r~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~-~ 479 (689)
...+...+..|++.++.++.+|+..+..++.--... -..+...|.| |..-|....+++.-..+.+|..+...-. .
T Consensus 798 pqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nvigm~ 875 (1172)
T KOG0213|consen 798 PQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNVIGMT 875 (1172)
T ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHhcccc
Confidence 456677888899999999999999998887632111 1223333443 5677777888887666666655532110 0
Q ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHH-hhCChHHHHHhhcCCCHHHHHHHHHHHHhhhh
Q 005598 480 KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG-RSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 557 (689)
Q Consensus 480 k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~-~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~ 557 (689)
+..--..+.+|.|.-+|++....++++.+..+..++....-..... ...+--.|+++|+..+..++++|..++..++.
T Consensus 876 km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 876 KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred ccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 0000124789999999999999999999999999876332111111 11334467888888888888888877776654
No 138
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.51 Score=56.37 Aligned_cols=136 Identities=21% Similarity=0.259 Sum_probs=108.5
Q ss_pred HHHHHHHHHHhhccCcccHHHHHh----cCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHH
Q 005598 421 QREATAELRLLAKHNMDNRMVIAN----CGAINILVDMLHS-SETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHV 495 (689)
Q Consensus 421 q~~Al~~L~~La~~s~~nr~~i~~----~g~I~~Lv~lL~s-~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~l 495 (689)
...++.+|+++.+.++.-...+.. .|-++.++.+|.. .+++++.-|+.++..+..+.++-..++..+.+..|+.+
T Consensus 1742 v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~l 1821 (2235)
T KOG1789|consen 1742 VLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTL 1821 (2235)
T ss_pred HHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHH
Confidence 456788999998877755444432 2778888888865 57889999999998888888888899999999999999
Q ss_pred HcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcC-CCHHHHHHHHHHHHhhhh
Q 005598 496 LQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGN-GTPRGKKDAATALFNLSI 557 (689)
Q Consensus 496 L~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~-~~~~v~~~Al~aL~nLs~ 557 (689)
|.+ -+..|+.++.+|..|+++.+....-.+.|++..+.+++-. .+++.+..++..+..|..
T Consensus 1822 LHS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1822 LHS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred Hhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhh
Confidence 954 5778999999999999988877777788888888877754 467777778888877765
No 139
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.41 E-value=0.0069 Score=43.63 Aligned_cols=40 Identities=35% Similarity=0.395 Sum_probs=35.7
Q ss_pred chhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhh
Q 005598 518 EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 557 (689)
Q Consensus 518 ~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~ 557 (689)
++++..+.+.|+++.|+++|.+++..+++.++++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3467778889999999999998899999999999999863
No 140
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.41 E-value=0.022 Score=56.53 Aligned_cols=124 Identities=19% Similarity=0.213 Sum_probs=92.1
Q ss_pred CCCHHHHHHHHHHHHhhhhchHHHHHHHH----------------hCcHHHHHHhc-C------CChHHHHHHHHHHHHH
Q 005598 539 NGTPRGKKDAATALFNLSIYHENKARIVQ----------------AGAVKHLVDLM-D------PAAGMVDKAVAVLANL 595 (689)
Q Consensus 539 ~~~~~v~~~Al~aL~nLs~~~~n~~~lv~----------------~G~v~~Lv~LL-~------~~~~v~e~Al~~L~nL 595 (689)
+........++.+|.||+..+..+..++. ...+..|++++ . ....-.+....+|.||
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 33445566788899999998887776554 23567777776 3 2234567889999999
Q ss_pred hCCchhHHHHHhc--Cc--HHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHh--CCChHHHHHhhhc
Q 005598 596 ATIPDGRVAIGQE--NG--IPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQ--EGAVPPLVALSQS 662 (689)
Q Consensus 596 a~~~e~r~~i~~~--g~--v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~--~g~i~~L~~LL~~ 662 (689)
+..+++|..+.+. +. +..|+..+.+.+..-+.-++.+|.|+|.....+...+-. .++++.|+.-+..
T Consensus 86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLaG 158 (192)
T PF04063_consen 86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLAG 158 (192)
T ss_pred cCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhccC
Confidence 9999999999864 34 677888888888899999999999999988755444432 3677777776663
No 141
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.0022 Score=68.47 Aligned_cols=46 Identities=17% Similarity=0.452 Sum_probs=39.3
Q ss_pred cccccccccccC--ce-ecCCCccccHHHHHHHHhcCCCCCCCCCCcCC
Q 005598 101 FCCPLSLELMTD--PV-IVASGQTYERAFIKKWIDLGLFVCPKTRQTLA 146 (689)
Q Consensus 101 f~CpI~~~lm~d--PV-~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~ 146 (689)
+.|-||++-+++ -| ++||+|.|=..||..||......||+|++...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 799999998875 33 58999999999999999987677999998543
No 142
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.38 E-value=0.1 Score=61.51 Aligned_cols=263 Identities=16% Similarity=0.159 Sum_probs=141.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHH-HhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-CccHHHHHH
Q 005598 408 KLVEDLKSTSLDTQREATAELR-LLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAIAN 485 (689)
Q Consensus 408 ~Lv~~L~s~~~~~q~~Al~~L~-~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~-~~~k~~i~~ 485 (689)
.|++.+.+.+.+.+..|+.-|. .|-+.+ .+-..=.+...+..|+++|...+.+||..|+.+|+-|+.. .+.+ +
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkds-i~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~--l-- 83 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDS-IKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQ--L-- 83 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhh-hhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHH--H--
Confidence 7889999999999988887654 332221 1111112236788999999999999999999999988621 1111 0
Q ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHH-hcccCchhHHHHHhh----CChHHHHHhhcC--CCHHHHHHHHHHHHhhhhc
Q 005598 486 ANAIEPLIHVLQTGSPEARENAAATLF-SLSVIEDNKIKIGRS----GAIGPLVDLLGN--GTPRGKKDAATALFNLSIY 558 (689)
Q Consensus 486 ~g~l~~Lv~lL~s~~~~~~~~Aa~aL~-nLs~~~~~k~~I~~~----g~I~~Lv~LL~~--~~~~v~~~Al~aL~nLs~~ 558 (689)
...+..|+.-+-++....+.-+.-.|. .++..+......... .+.+.|...+.. ....++..++..+..+-..
T Consensus 84 e~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr 163 (1233)
T KOG1824|consen 84 ETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSR 163 (1233)
T ss_pred HHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh
Confidence 012333333322343333333332222 222212111111111 223334443332 2334566666666544321
Q ss_pred -hHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhcc-CCHHHHHHHHHHHHH
Q 005598 559 -HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAALLQ 635 (689)
Q Consensus 559 -~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s-~s~~~~e~Av~aL~~ 635 (689)
..--.. ...+....++.-| .....+..+|+.+|+.|+....+- .. .+.+..|++-|.. ........-+.+|..
T Consensus 164 ~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~-ly--~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~ 239 (1233)
T KOG1824|consen 164 FGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD-LY--VELIEHLLKGLSNRTQMSATRTYIQCLAA 239 (1233)
T ss_pred hcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH-HH--HHHHHHHHhccCCCCchHHHHHHHHHHHH
Confidence 110000 2234445555545 455677889999999998733221 11 1234444444432 345555556777777
Q ss_pred HhhCCHhhHHHHHhCCChHHHHHhh---hcCCHHHHHHHHHHHHHhhc
Q 005598 636 LCTNSSRFCSMVLQEGAVPPLVALS---QSGTPRAKEKAQALLSYFRN 680 (689)
Q Consensus 636 L~~~~~~~~~~lv~~g~i~~L~~LL---~~~~~~vr~~A~~lL~~L~~ 680 (689)
+|+.... +-----...++.+..+. +.++++.|+.....|..|-.
T Consensus 240 i~r~ag~-r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~ 286 (1233)
T KOG1824|consen 240 ICRQAGH-RFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLR 286 (1233)
T ss_pred HHHHhcc-hhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHH
Confidence 8776542 11111146788888888 66778999999888877644
No 143
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=96.37 E-value=0.0031 Score=63.78 Aligned_cols=62 Identities=21% Similarity=0.274 Sum_probs=47.2
Q ss_pred ccccccccccccCcee-cCCCccccHHHHHHHHhcC-CCCCCCCCCc----CCCCCCCccHHHHHHHH
Q 005598 100 DFCCPLSLELMTDPVI-VASGQTYERAFIKKWIDLG-LFVCPKTRQT----LAHTTLIPNYTVKALIA 161 (689)
Q Consensus 100 ~f~CpI~~~lm~dPV~-~~~G~ty~r~~I~~~l~~~-~~~cP~t~~~----l~~~~l~pn~~l~~~i~ 161 (689)
+++|||+......||+ ..|||.|+|..|+.++... ...||+-+.. +....+.+...++..|+
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~~~~~~~~~~l~~d~el~~kIr 243 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCENPYYIQPGHLDEDKELQQKIR 243 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCCccccccccccCchHHHHHHHH
Confidence 4899999999999998 5899999999999998752 2459998766 22345556555655554
No 144
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=0.068 Score=61.90 Aligned_cols=170 Identities=16% Similarity=0.163 Sum_probs=97.7
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc-HH
Q 005598 403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNN-KS 481 (689)
Q Consensus 403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~-k~ 481 (689)
...+..|.+.+++.++.++..|+..+.++-. .+.......|.++.|-.++...++.|..+|+.+|..+.....+ -.
T Consensus 120 ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~---~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~ 196 (734)
T KOG1061|consen 120 EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD---IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNL 196 (734)
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHhhc---CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCc
Confidence 4677889999999999999999999888855 3556677789999999999988999999999999998643322 00
Q ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHH
Q 005598 482 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN 561 (689)
Q Consensus 482 ~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n 561 (689)
.......+..++..|..-+.=.+.....++.+-...+. +.. ...+..+...|.+.+..+...+...+.++......
T Consensus 197 ~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~-~ea---~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~ 272 (734)
T KOG1061|consen 197 LELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS-REA---EDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ 272 (734)
T ss_pred ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc-hhH---HHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH
Confidence 00011122222222222111122222222222211111 110 13345555556666666666666666666554444
Q ss_pred HHHHHHhCcHHHHHHhcC
Q 005598 562 KARIVQAGAVKHLVDLMD 579 (689)
Q Consensus 562 ~~~lv~~G~v~~Lv~LL~ 579 (689)
....+-...-+.|+.+++
T Consensus 273 ~~~~~~~K~~~pl~tlls 290 (734)
T KOG1061|consen 273 VNELLFKKVAPPLVTLLS 290 (734)
T ss_pred HHHHHHHHhcccceeeec
Confidence 333333344444555553
No 145
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.29 E-value=0.071 Score=51.04 Aligned_cols=120 Identities=15% Similarity=0.161 Sum_probs=97.9
Q ss_pred HHHHhhCChHHHHHhhcCCC------HHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhcC---CChHHHHHHHHHH
Q 005598 522 IKIGRSGAIGPLVDLLGNGT------PRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMD---PAAGMVDKAVAVL 592 (689)
Q Consensus 522 ~~I~~~g~I~~Lv~LL~~~~------~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL~---~~~~v~e~Al~~L 592 (689)
..+...+++..|++++.++. ......++.++..|-...-..+..+....|..++.++. .+..+...|+++|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 34567799999999999875 36777889999998777666788888888999999882 2578889999999
Q ss_pred HHHhCCchh-HHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCH
Q 005598 593 ANLATIPDG-RVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 641 (689)
Q Consensus 593 ~nLa~~~e~-r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~ 641 (689)
.++..+... ...+.++=.++.|+..|+..++..+.+|+..+-.|....+
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 999997776 4555555569999999999999999999999988766544
No 146
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=0.083 Score=60.09 Aligned_cols=181 Identities=22% Similarity=0.212 Sum_probs=114.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccC-----ch--h
Q 005598 448 INILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-----ED--N 520 (689)
Q Consensus 448 I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~-----~~--~ 520 (689)
+.-|+.+....+..|+..|+.+|+.|+..-..- .......++.|++.+..+|..|+.+++-.+.. +. .
T Consensus 200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~-----~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~ 274 (823)
T KOG2259|consen 200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLS-----KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESE 274 (823)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhccccccc-----HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence 334778888889999999999998886422111 12355677888888899999998777655431 11 1
Q ss_pred HHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhc-hHHHHH-----------------------------------
Q 005598 521 KIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKAR----------------------------------- 564 (689)
Q Consensus 521 k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~-~~n~~~----------------------------------- 564 (689)
...+ ...++..+.+.+++.+..++..|+.+|..+..- .+...+
T Consensus 275 e~kl-~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~ 353 (823)
T KOG2259|consen 275 EEKL-KDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEW 353 (823)
T ss_pred hhhh-HHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccc
Confidence 1111 224666777777777777777777776655331 111111
Q ss_pred ---------------HHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchh-HHHHHhcCcHHHHHHHhccCCHHHHH
Q 005598 565 ---------------IVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDG-RVAIGQENGIPVLVEVVELGSARGKE 627 (689)
Q Consensus 565 ---------------lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~-r~~i~~~g~v~~Lv~lL~s~s~~~~e 627 (689)
++..|+.-+++.=| ++--++...|+..+..|+.+..+ .. .++..|+.++...-..++.
T Consensus 354 ~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~~VRL 428 (823)
T KOG2259|consen 354 NADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIEVVRL 428 (823)
T ss_pred cccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHHHHHH
Confidence 11222233333333 22346777888888888874332 22 2467889999888899999
Q ss_pred HHHHHHHHHhhC
Q 005598 628 NAAAALLQLCTN 639 (689)
Q Consensus 628 ~Av~aL~~L~~~ 639 (689)
.|+.+|..++.+
T Consensus 429 ~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 429 KAIFALTMISVH 440 (823)
T ss_pred HHHHHHHHHHHH
Confidence 999999988876
No 147
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.0029 Score=63.11 Aligned_cols=54 Identities=22% Similarity=0.438 Sum_probs=46.5
Q ss_pred CccccccccccccCce----ecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCCcc
Q 005598 99 SDFCCPLSLELMTDPV----IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 153 (689)
Q Consensus 99 ~~f~CpI~~~lm~dPV----~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~pn 153 (689)
..|.||+|.+.+.+-+ +-+|||+|+..|.++.+... ..||+|+.+++.+++++-
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D-~v~pv~d~plkdrdiI~L 277 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKD-MVDPVTDKPLKDRDIIGL 277 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcccc-ccccCCCCcCcccceEee
Confidence 4689999999988764 34899999999999998865 669999999999998873
No 148
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.23 E-value=0.36 Score=49.09 Aligned_cols=178 Identities=16% Similarity=0.119 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHcCC-----CHHHHHHHHHHHHhcccCchh--HHHHHhhCChHHH
Q 005598 461 KIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTG-----SPEARENAAATLFSLSVIEDN--KIKIGRSGAIGPL 533 (689)
Q Consensus 461 ~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~s~-----~~~~~~~Aa~aL~nLs~~~~~--k~~I~~~g~I~~L 533 (689)
.-..+|+.+|--++.+++.|..+.++..--.|-.+|..+ ...+|..++++|..|..+++. -..+...+++|.+
T Consensus 94 nRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 94 NRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred chHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 345677777777788999999999886555555566532 367899999999999885543 3334567999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHH--------hCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhHH
Q 005598 534 VDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ--------AGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRV 603 (689)
Q Consensus 534 v~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~--------~G~v~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~r~ 603 (689)
++.+..|+...+..|..++..+-.++.+-..+.. .-.+..++.-+ .+...+...++.+.-+|+.++..|.
T Consensus 174 Lrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~ 253 (293)
T KOG3036|consen 174 LRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARA 253 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 9999999999999999999888777665433332 12222233323 3667788899999999999998888
Q ss_pred HHHh---cCcHHHHHHHhccCCHHHHHHHHHHHHHHhh
Q 005598 604 AIGQ---ENGIPVLVEVVELGSARGKENAAAALLQLCT 638 (689)
Q Consensus 604 ~i~~---~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~ 638 (689)
++.. .+.-..-...+...++..+..-...+.++|.
T Consensus 254 aL~~clPd~Lrd~tfs~~l~~D~~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 254 ALRSCLPDQLRDGTFSLLLKDDPETKQWLQQLLKNLCT 291 (293)
T ss_pred HHHhhCcchhccchHHHHHhcChhHHHHHHHHHHHhcc
Confidence 8753 1111111222223455555555555555553
No 149
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=0.066 Score=60.89 Aligned_cols=215 Identities=19% Similarity=0.163 Sum_probs=136.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC---C---c
Q 005598 405 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN---D---N 478 (689)
Q Consensus 405 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~---~---~ 478 (689)
...-|+.+..+.+..++..|+..|..|.....-.+ -.....+.++..++..|+..|+.++..+..- + +
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~------~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e 272 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSK------ACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERE 272 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhcccccccH------HHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence 33447888888888889999998888765332221 2345567788888888988887776655421 1 1
Q ss_pred cHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCch---------------------------------------
Q 005598 479 NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED--------------------------------------- 519 (689)
Q Consensus 479 ~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~--------------------------------------- 519 (689)
+-+.-....++..++..+.+.+..+|..|+.+|..+-...+
T Consensus 273 ~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~ 352 (823)
T KOG2259|consen 273 SEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKE 352 (823)
T ss_pred hhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcc
Confidence 11111112456667777776666666666665543321100
Q ss_pred ------------hHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-CCChHHHH
Q 005598 520 ------------NKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVD 586 (689)
Q Consensus 520 ------------~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e 586 (689)
....|...|+-..+|.-|.++-.+++++|+..++.|+.+... ....++..|++++ ++-..+..
T Consensus 353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~----FA~~aldfLvDMfNDE~~~VRL 428 (823)
T KOG2259|consen 353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG----FAVRALDFLVDMFNDEIEVVRL 428 (823)
T ss_pred ccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC----cHHHHHHHHHHHhccHHHHHHH
Confidence 112233445666777777777789999999999999885443 2234678899999 55566778
Q ss_pred HHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHH
Q 005598 587 KAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALL 634 (689)
Q Consensus 587 ~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~ 634 (689)
.|+.+|..|+.+-. ++..-++.+++.|...+..+++..-..|.
T Consensus 429 ~ai~aL~~Is~~l~-----i~eeql~~il~~L~D~s~dvRe~l~elL~ 471 (823)
T KOG2259|consen 429 KAIFALTMISVHLA-----IREEQLRQILESLEDRSVDVREALRELLK 471 (823)
T ss_pred HHHHHHHHHHHHhe-----ecHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999998887522 23334566666776667776665444443
No 150
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.16 E-value=0.002 Score=62.20 Aligned_cols=45 Identities=16% Similarity=0.275 Sum_probs=40.4
Q ss_pred cccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCC
Q 005598 101 FCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLA 146 (689)
Q Consensus 101 f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~ 146 (689)
|.|-||.+-++.||++.|||.||-.|-.+-++.+ .+|-+|+....
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg-~~C~~Cgk~t~ 241 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQKG-DECGVCGKATY 241 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhccC-Ccceecchhhc
Confidence 9999999999999999999999999988888766 66999987643
No 151
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.12 E-value=0.029 Score=49.73 Aligned_cols=66 Identities=20% Similarity=0.221 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHhc--cCCHHHHHHHHHHHHHHhhCCHhhHHHHHhC
Q 005598 585 VDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVE--LGSARGKENAAAALLQLCTNSSRFCSMVLQE 650 (689)
Q Consensus 585 ~e~Al~~L~nLa~-~~e~r~~i~~~g~v~~Lv~lL~--s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~ 650 (689)
....+.+|+||+. ++..+..+.+.|+++.++.... ..+|..+++|+.++.+||.++++++..|.+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 4567889999998 6777899999999999998863 4689999999999999999999988888753
No 152
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.08 E-value=0.39 Score=49.57 Aligned_cols=190 Identities=17% Similarity=0.157 Sum_probs=126.0
Q ss_pred CHHHHHHHHHHHHHhhccCcccHHHHHh--cCcHHHHHHhh-------cCCC--H---HHHHHHHHHHHHhhcCCccHHH
Q 005598 417 SLDTQREATAELRLLAKHNMDNRMVIAN--CGAINILVDML-------HSSE--T---KIQENAVTALLNLSINDNNKSA 482 (689)
Q Consensus 417 ~~~~q~~Al~~L~~La~~s~~nr~~i~~--~g~I~~Lv~lL-------~s~~--~---~v~~~Al~aL~nLs~~~~~k~~ 482 (689)
+++.+..|+..|..--... .+-..+.- .|.+..|++=+ .... + .-..+|+..|--++.+++.|..
T Consensus 8 ~~~~Re~Al~eLsk~r~~~-~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESF-PDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC--TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHH
T ss_pred CcchHHHHHHHHHHhhhcc-cchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHH
Confidence 4666777777766543322 22332222 37777776532 2211 2 2345666666667889999999
Q ss_pred HHHcCCHHHHHHHHcCCC-----HHHHHHHHHHHHhcccCch--hHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhh
Q 005598 483 IANANAIEPLIHVLQTGS-----PEARENAAATLFSLSVIED--NKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL 555 (689)
Q Consensus 483 i~~~g~l~~Lv~lL~s~~-----~~~~~~Aa~aL~nLs~~~~--~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nL 555 (689)
+.++...--|.-+|+..+ ..+|..+.+++..|...++ .-..+...+++|.+++.+..++.-.+..|.-.+..+
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 999876666666665432 5689999999999987443 344456679999999999999999999999999998
Q ss_pred hhchHHHHHHHH--------hCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhHHHHHh
Q 005598 556 SIYHENKARIVQ--------AGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQ 607 (689)
Q Consensus 556 s~~~~n~~~lv~--------~G~v~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~r~~i~~ 607 (689)
-.++.+-..+.. ..++..++.-+ +++..+....+.+-..|+.++..++++.+
T Consensus 167 L~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 167 LLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred HcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 887765444332 23334444433 57788889999999999999998888763
No 153
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.06 E-value=0.26 Score=55.71 Aligned_cols=153 Identities=17% Similarity=0.135 Sum_probs=101.3
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCc--ccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccH
Q 005598 403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNM--DNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNK 480 (689)
Q Consensus 403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~--~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k 480 (689)
...|...+..|++..+.++..|+.....|+.-=. .....+...|.| |..-|....+++.-..+.++..+......+
T Consensus 603 ~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 603 SMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhccc
Confidence 4678889999999999999999988887765211 011223333332 455666678888776666666653211111
Q ss_pred H-HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHh-hCChHHHHHhhcCCCHHHHHHHHHHHHhhhh
Q 005598 481 S-AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGR-SGAIGPLVDLLGNGTPRGKKDAATALFNLSI 557 (689)
Q Consensus 481 ~-~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~-~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~ 557 (689)
. .--..|.+|.|.-+|++....+..+.+..+..++.......-..+ ..+--.|+++|++.+.+++++|..++..++.
T Consensus 681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 1 011247899999999999999999999999888764332111111 1334568888888899999988877776654
No 154
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.04 E-value=0.2 Score=59.12 Aligned_cols=233 Identities=13% Similarity=0.112 Sum_probs=135.5
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHH-HHHHHHHHhhcCCccH
Q 005598 402 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQE-NAVTALLNLSINDNNK 480 (689)
Q Consensus 402 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~-~Al~aL~nLs~~~~~k 480 (689)
....+..|++.|.+.+.++|..|+++|.-|+..-++.+ +. ..+..|+.-+-++-...+. .++.....++.-+...
T Consensus 45 e~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~--le--~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~ 120 (1233)
T KOG1824|consen 45 ERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQ--LE--TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSS 120 (1233)
T ss_pred hhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHH--HH--HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcc
Confidence 35688999999999999999999999999985432222 11 2344444432222222222 2222222222222222
Q ss_pred HHHHHcCCHHHHHHHHcCC-----C-HHHHHHHHHHHHhccc-CchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHH
Q 005598 481 SAIANANAIEPLIHVLQTG-----S-PEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALF 553 (689)
Q Consensus 481 ~~i~~~g~l~~Lv~lL~s~-----~-~~~~~~Aa~aL~nLs~-~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~ 553 (689)
.......+++.+...|... + ..++..++..|..+-. ....-.. ...+.+..++.-|.+....+++.|+.+|.
T Consensus 121 ~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~ 199 (1233)
T KOG1824|consen 121 SSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALG 199 (1233)
T ss_pred ccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHH
Confidence 2233344555555555432 1 2355555555554322 1111111 23356667777777778899999999999
Q ss_pred hhhhchHHHHHHHHhCcHHHHHHhcC--CChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHh---ccCCHHHHHH
Q 005598 554 NLSIYHENKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVV---ELGSARGKEN 628 (689)
Q Consensus 554 nLs~~~~n~~~lv~~G~v~~Lv~LL~--~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL---~s~s~~~~e~ 628 (689)
.|+..-.. .+-.+++..|++=|. .....+..-+.+|+.+|.....|-----...+|.+.+.. ...+++.++.
T Consensus 200 ~la~~~~~---~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~ 276 (1233)
T KOG1824|consen 200 HLASSCNR---DLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREY 276 (1233)
T ss_pred HHHHhcCH---HHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHH
Confidence 99874321 233456677777773 233344455666666666433332212234688888888 6678999999
Q ss_pred HHHHHHHHhhCCHh
Q 005598 629 AAAALLQLCTNSSR 642 (689)
Q Consensus 629 Av~aL~~L~~~~~~ 642 (689)
+..+|-.+...++.
T Consensus 277 ~lQale~fl~rcp~ 290 (1233)
T KOG1824|consen 277 CLQALESFLRRCPK 290 (1233)
T ss_pred HHHHHHHHHHhChh
Confidence 99999998887774
No 155
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.02 E-value=0.32 Score=56.35 Aligned_cols=264 Identities=15% Similarity=0.150 Sum_probs=168.4
Q ss_pred hHHHHHHHHhcC--CCHHHHHHHHHHHHHh---hcc---CcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhh-
Q 005598 404 TQVRKLVEDLKS--TSLDTQREATAELRLL---AKH---NMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS- 474 (689)
Q Consensus 404 ~~V~~Lv~~L~s--~~~~~q~~Al~~L~~L---a~~---s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs- 474 (689)
..+-.++..++. ++..++..|+.+|.+- ++. ++..|+. +....+..-++++.+++..|..+|..+.
T Consensus 172 ~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~-----iMqvvcEatq~~d~~i~~aa~~ClvkIm~ 246 (859)
T KOG1241|consen 172 DILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNY-----IMQVVCEATQSPDEEIQVAAFQCLVKIMS 246 (859)
T ss_pred HHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhce-----eeeeeeecccCCcHHHHHHHHHHHHHHHH
Confidence 455666766664 4667888888887643 221 1222222 3445666777889999999999998874
Q ss_pred cCCccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCc-h----hH-----------HHHHh---hCChHHHHH
Q 005598 475 INDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE-D----NK-----------IKIGR---SGAIGPLVD 535 (689)
Q Consensus 475 ~~~~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~-~----~k-----------~~I~~---~g~I~~Lv~ 535 (689)
..-+....-+....+..-+.-+++.++++...++..=.+++..+ + .. ..+.. .+++|.|++
T Consensus 247 LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~ 326 (859)
T KOG1241|consen 247 LYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLE 326 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHH
Confidence 22233333334445555566778889999888887766665311 0 00 11111 267788888
Q ss_pred hhcC-------CCHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-----CCChHHHHHHHHHHHHHhCCchh-H
Q 005598 536 LLGN-------GTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-----DPAAGMVDKAVAVLANLATIPDG-R 602 (689)
Q Consensus 536 LL~~-------~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-----~~~~~v~e~Al~~L~nLa~~~e~-r 602 (689)
+|.. ++....++|..+|.-++.. ++..+|+.++.++ .++..-.+.|+-+++.+-..++. +
T Consensus 327 ~L~kqde~~d~DdWnp~kAAg~CL~l~A~~-------~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~ 399 (859)
T KOG1241|consen 327 LLTKQDEDDDDDDWNPAKAAGVCLMLFAQC-------VGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDK 399 (859)
T ss_pred HHHhCCCCcccccCcHHHHHHHHHHHHHHH-------hcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhh
Confidence 8863 1345677777777766542 3445555666555 46667788888888887776554 3
Q ss_pred HHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHh-CCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 005598 603 VAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQ-EGAVPPLVALSQSGTPRAKEKAQALLSYFRN 680 (689)
Q Consensus 603 ~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~-~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~ 680 (689)
-.-+..+++|.++.++...+-.++..+++.|..++...+..+.-... ...++.|+.=+ .+.|++..++.|.+-.|..
T Consensus 400 Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL-~DePrva~N~CWAf~~Lae 477 (859)
T KOG1241|consen 400 LTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGL-NDEPRVASNVCWAFISLAE 477 (859)
T ss_pred hhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHh-hhCchHHHHHHHHHHHHHH
Confidence 33345678999999999888899999999999999887743322211 22222222222 3458999999998888874
No 156
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.96 E-value=0.0045 Score=61.86 Aligned_cols=37 Identities=35% Similarity=0.598 Sum_probs=33.3
Q ss_pred CCCccccccccccccCceecCCCccccHHHHHHHHhc
Q 005598 97 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL 133 (689)
Q Consensus 97 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~ 133 (689)
|-+.=+|.+|++.++|||+.+.||.|||.||.+++..
T Consensus 40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA 76 (303)
T ss_pred cCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence 5555689999999999999999999999999999864
No 157
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=95.91 E-value=0.41 Score=50.39 Aligned_cols=220 Identities=15% Similarity=0.131 Sum_probs=137.1
Q ss_pred CHHHHHHHHHHHHHhhccCcccHHHH-HhcCcHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCccHHHHHHc-CCHHHH
Q 005598 417 SLDTQREATAELRLLAKHNMDNRMVI-ANCGAINILVDMLHS--SETKIQENAVTALLNLSINDNNKSAIANA-NAIEPL 492 (689)
Q Consensus 417 ~~~~q~~Al~~L~~La~~s~~nr~~i-~~~g~I~~Lv~lL~s--~~~~v~~~Al~aL~nLs~~~~~k~~i~~~-g~l~~L 492 (689)
++-.+.-|+.++.++... ++.|..+ ++...-..++.+++. .+.++|.+.+-+++-|+.++.....+-.. ..+..|
T Consensus 162 ~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dl 240 (432)
T COG5231 162 DFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDL 240 (432)
T ss_pred HHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 444456677888888774 4555544 344445566777755 35678999999999998777665444332 566777
Q ss_pred HHHHcCCC-HHHHHHHHHHHHhcccCchhHHH---HHhhCChHHHHHhhcCC---CHHHHHHHHH---HH----Hhhhhc
Q 005598 493 IHVLQTGS-PEARENAAATLFSLSVIEDNKIK---IGRSGAIGPLVDLLGNG---TPRGKKDAAT---AL----FNLSIY 558 (689)
Q Consensus 493 v~lL~s~~-~~~~~~Aa~aL~nLs~~~~~k~~---I~~~g~I~~Lv~LL~~~---~~~v~~~Al~---aL----~nLs~~ 558 (689)
+.+.+... ..+..-.++.+.++.. ...+.. +.-.|-+...|++|..+ +.+.+...-. .| ..||..
T Consensus 241 i~iVk~~~keKV~Rlc~~Iv~n~~d-K~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~f 319 (432)
T COG5231 241 IAIVKERAKEKVLRLCCGIVANVLD-KSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIF 319 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-ccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 77777543 4566667777777765 222333 33346566777777643 2222221110 00 011111
Q ss_pred ------------------------hHHHHHHHH--hCcHHHHHHhcCC--ChHHHHHHHHHHHHHhC-CchhHHHHHhcC
Q 005598 559 ------------------------HENKARIVQ--AGAVKHLVDLMDP--AAGMVDKAVAVLANLAT-IPDGRVAIGQEN 609 (689)
Q Consensus 559 ------------------------~~n~~~lv~--~G~v~~Lv~LL~~--~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g 609 (689)
+.|...+.+ -.++..|.++|.. ......-|+.=+..+.+ .|+++..+...|
T Consensus 320 D~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg 399 (432)
T COG5231 320 DNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYG 399 (432)
T ss_pred HHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhh
Confidence 223344444 3467778888832 22233445555555554 789999999999
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHHhh
Q 005598 610 GIPVLVEVVELGSARGKENAAAALLQLCT 638 (689)
Q Consensus 610 ~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~ 638 (689)
+-..++.++.+.+++++..|..++..+..
T Consensus 400 ~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 400 VKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 99999999999999999999999877643
No 158
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=95.79 E-value=0.0034 Score=67.13 Aligned_cols=34 Identities=15% Similarity=0.447 Sum_probs=30.3
Q ss_pred CCccccccccccccCceecCCCccccHHHHHHHH
Q 005598 98 PSDFCCPLSLELMTDPVIVASGQTYERAFIKKWI 131 (689)
Q Consensus 98 p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l 131 (689)
.+++.||||...|+||++++|||+.||.|-..-+
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNIL 35 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhc
Confidence 4689999999999999999999999999976443
No 159
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.79 E-value=0.68 Score=54.70 Aligned_cols=144 Identities=19% Similarity=0.225 Sum_probs=112.0
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHH
Q 005598 402 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 481 (689)
Q Consensus 402 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~ 481 (689)
+....+.+++.+.+.+.++++-.-..|..+++..+ ..++ -++..+..=|++.++.++-.|++.|..|-..
T Consensus 53 mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P--~~~l---LavNti~kDl~d~N~~iR~~AlR~ls~l~~~----- 122 (757)
T COG5096 53 MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKP--ELAL---LAVNTIQKDLQDPNEEIRGFALRTLSLLRVK----- 122 (757)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH--HHHH---HHHHHHHhhccCCCHHHHHHHHHHHHhcChH-----
Confidence 45677888888888898888877778888888765 2222 2577777888889999999999998776311
Q ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhc
Q 005598 482 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY 558 (689)
Q Consensus 482 ~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~ 558 (689)
-.-...++++.+.+.++++.+|..|+-+|+.+=.. .+..+.+.|.+..+..++.+.++.+..+|+.+|..+...
T Consensus 123 -el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 123 -ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred -HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 12235688899999999999999999999988432 233444568999999999999999999999999987543
No 160
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.77 E-value=0.027 Score=43.75 Aligned_cols=55 Identities=27% Similarity=0.161 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhh
Q 005598 501 PEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL 555 (689)
Q Consensus 501 ~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nL 555 (689)
+.+|..|+++|.+++........-....+++.|+.+|++.+..++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4688999999999876555444445568899999999999999999999999875
No 161
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=95.76 E-value=0.27 Score=56.74 Aligned_cols=150 Identities=11% Similarity=0.148 Sum_probs=101.3
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHH--HH-HhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHH
Q 005598 529 AIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKAR--IV-QAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVA 604 (689)
Q Consensus 529 ~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~--lv-~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~ 604 (689)
++..++..|++.++.++..|+.++..|+.--.++.. +. ..|+ +|.+.| ...+++.-..+++|..+...-..-..
T Consensus 800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~km 877 (1172)
T KOG0213|consen 800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKM 877 (1172)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhcccccc
Confidence 345567788899999999999999988875444432 22 2333 477777 45566666666666655542111000
Q ss_pred H-HhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 005598 605 I-GQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 680 (689)
Q Consensus 605 i-~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~ 680 (689)
. =-.+.+|.|.-+|++...+++++++..+..+|..+++....--=..+---|+.+|.+.+..+|+.|...+..+.+
T Consensus 878 ~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 878 TPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred CCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 0 013578999999999999999999999999999987522111112233457888888888899998877666554
No 162
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.0069 Score=61.68 Aligned_cols=49 Identities=27% Similarity=0.358 Sum_probs=41.1
Q ss_pred CCccccccccccccCceec-CCCccccHHHHHHHHhcC-CCCCCCCCCcCC
Q 005598 98 PSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLG-LFVCPKTRQTLA 146 (689)
Q Consensus 98 p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~l~~~-~~~cP~t~~~l~ 146 (689)
-....||+|++-..-|.+. +|||.||.-||..-+... ..+||.|+.+..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 3568999999999999986 599999999999987643 357999998764
No 163
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.72 E-value=1.1 Score=52.47 Aligned_cols=106 Identities=10% Similarity=0.055 Sum_probs=66.4
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc-CCccHHH
Q 005598 404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI-NDNNKSA 482 (689)
Q Consensus 404 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~-~~~~k~~ 482 (689)
...+.+.++|+..++.++..|+-+...+-+..|.--.. +++....+|...+..|...++..+..++. +++.-..
T Consensus 142 dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~-----f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~ 216 (866)
T KOG1062|consen 142 DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH-----FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSY 216 (866)
T ss_pred HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-----hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHH
Confidence 56678888888899999999888888777766544333 35566667766666666666777766653 2333333
Q ss_pred HHHcCCHHHHHHHHcC---------------CCHHHHHHHHHHHHhccc
Q 005598 483 IANANAIEPLIHVLQT---------------GSPEARENAAATLFSLSV 516 (689)
Q Consensus 483 i~~~g~l~~Lv~lL~s---------------~~~~~~~~Aa~aL~nLs~ 516 (689)
+.+ .++.|+.+|++ .++-++...+.+|.-|-.
T Consensus 217 fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq 263 (866)
T KOG1062|consen 217 FRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQ 263 (866)
T ss_pred HHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcC
Confidence 322 55556665541 134566666666665544
No 164
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.72 E-value=2.4 Score=49.16 Aligned_cols=241 Identities=16% Similarity=0.148 Sum_probs=143.1
Q ss_pred HHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHc-CCCHH
Q 005598 424 ATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQ-TGSPE 502 (689)
Q Consensus 424 Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~-s~~~~ 502 (689)
.+...-+|+.+-+.....+. .++..|.++|.+....++.-|+..+..|+........+-.. ...++..|+ ..+..
T Consensus 309 VLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvS 384 (938)
T KOG1077|consen 309 VLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVS 384 (938)
T ss_pred HHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchH
Confidence 44455555555444444444 36777888888877788888888888887665555555444 777888898 56889
Q ss_pred HHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhc--------hHHH-------HHHHH
Q 005598 503 ARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY--------HENK-------ARIVQ 567 (689)
Q Consensus 503 ~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~--------~~n~-------~~lv~ 567 (689)
+|..|+..|..++.... ...| +..|+++|.+.+..+++.-+.=+.-|+.. -+.. ...+.
T Consensus 385 irrravDLLY~mcD~~N-ak~I-----V~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vs 458 (938)
T KOG1077|consen 385 IRRRAVDLLYAMCDVSN-AKQI-----VAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVS 458 (938)
T ss_pred HHHHHHHHHHHHhchhh-HHHH-----HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhccccc
Confidence 99999999999875443 3333 56777888777666666544433333330 1111 12345
Q ss_pred hCcHHHHHHhcCCChHHHHHHHHHHHHHhCCchhHHHHHhcCc--H---------------HHHHHHh----ccCCHHHH
Q 005598 568 AGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENG--I---------------PVLVEVV----ELGSARGK 626 (689)
Q Consensus 568 ~G~v~~Lv~LL~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~--v---------------~~Lv~lL----~s~s~~~~ 626 (689)
.++...+++++-.+.++..-|+..+......+...+.++..|+ + ..+..+| ...++.++
T Consensus 459 deVW~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr 538 (938)
T KOG1077|consen 459 DEVWYRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTR 538 (938)
T ss_pred HHHHHHhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHH
Confidence 6788888888766677777666665554444444555544332 1 1222333 33566666
Q ss_pred HHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 005598 627 ENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 679 (689)
Q Consensus 627 e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~ 679 (689)
..-..+...++...++....+.+ .+......-+.+++..|.+-|.+..
T Consensus 539 ~lLLtTyiKl~nl~PEi~~~v~~-----vFq~~~n~~D~ElQqRa~EYLql~k 586 (938)
T KOG1077|consen 539 ALLLTTYIKLINLFPEIKSNVQK-----VFQLYSNLIDVELQQRAVEYLQLSK 586 (938)
T ss_pred HHHHHHHHHHHhhChhhhHHHHH-----HHHhhcccCCHHHHHHHHHHHHHHH
Confidence 66666667777766654333321 1122222245667777766555443
No 165
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.0039 Score=64.94 Aligned_cols=52 Identities=21% Similarity=0.354 Sum_probs=43.1
Q ss_pred CCCccccccccccccCceecC-CCccccHHHHHHHHhcCCCCCCCCCCcCCCCC
Q 005598 97 IPSDFCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT 149 (689)
Q Consensus 97 ~p~~f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~ 149 (689)
.|+.=.||+|..--.+|-++. +|.+||-.||-.|+.+ ..+||+|+.|..-.+
T Consensus 297 ~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~~v~~ 349 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPASVDH 349 (357)
T ss_pred CCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcchHHH
Confidence 355678999999888888765 6999999999999995 467999998876543
No 166
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.64 E-value=0.12 Score=59.93 Aligned_cols=243 Identities=20% Similarity=0.246 Sum_probs=150.2
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHH
Q 005598 402 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 481 (689)
Q Consensus 402 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~ 481 (689)
+....+.+++.+...+.+.+.-+--.+.+.+...+.- ..+++..++.=..+.++.++..|++.+..+-.+.
T Consensus 47 vSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~-----a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~---- 117 (734)
T KOG1061|consen 47 VSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL-----AILAVNTFLKDCEDPNPLIRALALRTMGCLRVDK---- 117 (734)
T ss_pred hHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchH-----HHhhhhhhhccCCCCCHHHHHHHhhceeeEeehH----
Confidence 4567889999999988887777777788888765432 2245666666556678888888877776553211
Q ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHH
Q 005598 482 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN 561 (689)
Q Consensus 482 ~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n 561 (689)
+-.....+|.+.+++.++.+|..|+..+.++- ..........|.++.|-+++.+.++.+..+|+.+|..+...+.+
T Consensus 118 --i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~--~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 118 --ITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLF--DIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred --HHHHHHHHHHHhccCCChhHHHHHHHHHHHhh--cCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence 11235678899999999999999888877763 33344455679999999999999999999999999998775432
Q ss_pred -HHHHHHhCcHHHHHHhcCCChHHHH-HHHHHHHHHhCC-ch-hHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 005598 562 -KARIVQAGAVKHLVDLMDPAAGMVD-KAVAVLANLATI-PD-GRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLC 637 (689)
Q Consensus 562 -~~~lv~~G~v~~Lv~LL~~~~~v~e-~Al~~L~nLa~~-~e-~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~ 637 (689)
-...+....+..+++.+. +..+ .-+.+|.+++.. +. .+++. ..+..+...|+..+..+...++.++.++.
T Consensus 194 ~~~~~l~~~~~~~lL~al~---ec~EW~qi~IL~~l~~y~p~d~~ea~---~i~~r~~p~Lqh~n~avvlsavKv~l~~~ 267 (734)
T KOG1061|consen 194 VNLLELNPQLINKLLEALN---ECTEWGQIFILDCLAEYVPKDSREAE---DICERLTPRLQHANSAVVLSAVKVILQLV 267 (734)
T ss_pred CCcccccHHHHHHHHHHHH---HhhhhhHHHHHHHHHhcCCCCchhHH---HHHHHhhhhhccCCcceEeehHHHHHHHH
Confidence 111111223333444331 1111 223344444441 11 12211 13455555666666677777777777766
Q ss_pred hCCHhhHHHHHhCCChHHHHHhhhcCC
Q 005598 638 TNSSRFCSMVLQEGAVPPLVALSQSGT 664 (689)
Q Consensus 638 ~~~~~~~~~lv~~g~i~~L~~LL~~~~ 664 (689)
..-......+ -...-++|+.++....
T Consensus 268 ~~~~~~~~~~-~~K~~~pl~tlls~~~ 293 (734)
T KOG1061|consen 268 KYLKQVNELL-FKKVAPPLVTLLSSES 293 (734)
T ss_pred HHHHHHHHHH-HHHhcccceeeecccc
Confidence 6554322222 2334455555555554
No 167
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.63 E-value=0.44 Score=57.85 Aligned_cols=216 Identities=17% Similarity=0.201 Sum_probs=127.7
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCccHHHHHHc--CCHHHHHHHHcCCCHHHHHHHHHHHHhcccC--chhHHHHHhhCChH
Q 005598 456 HSSETKIQENAVTALLNLSINDNNKSAIANA--NAIEPLIHVLQTGSPEARENAAATLFSLSVI--EDNKIKIGRSGAIG 531 (689)
Q Consensus 456 ~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~--g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~--~~~k~~I~~~g~I~ 531 (689)
++.+..+|..+-.+|..++..+.......+. .....|..-+++.....+.....+|..|-.. .+....+ ...|+
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k~I~ 741 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI--PKLIP 741 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH--HHHHH
Confidence 4457889999999999998665444433332 2333444444444445555555555555321 1222222 13455
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHHhC------cHHHHHHhcC-----CChHHHHHHHHHHHHHhCCch
Q 005598 532 PLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAG------AVKHLVDLMD-----PAAGMVDKAVAVLANLATIPD 600 (689)
Q Consensus 532 ~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G------~v~~Lv~LL~-----~~~~v~e~Al~~L~nLa~~~e 600 (689)
.++-.+++.+...+..|..+|..|+. .....+.| .+...+.++. +...++...+-++..+...
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e-- 815 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE-- 815 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH--
Confidence 55555588889999999999998873 11112222 3334444331 1111111113333333221
Q ss_pred hHHHHHhc----CcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHH
Q 005598 601 GRVAIGQE----NGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 676 (689)
Q Consensus 601 ~r~~i~~~----g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~ 676 (689)
...++.. +.+..+.-.|.+.++.+...|+..+..++..-+..+-.-..+-.++.++.+++..+-.+|.++..+|.
T Consensus 816 -~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Lle 894 (1176)
T KOG1248|consen 816 -FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLE 894 (1176)
T ss_pred -HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1112222 23455555567889999999999999999988754443334457899999999989999999998888
Q ss_pred Hhhc
Q 005598 677 YFRN 680 (689)
Q Consensus 677 ~L~~ 680 (689)
.|.+
T Consensus 895 kLir 898 (1176)
T KOG1248|consen 895 KLIR 898 (1176)
T ss_pred HHHH
Confidence 7754
No 168
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.63 E-value=0.46 Score=54.81 Aligned_cols=130 Identities=15% Similarity=0.147 Sum_probs=83.6
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-CccHHHHHHcCCH
Q 005598 411 EDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAIANANAI 489 (689)
Q Consensus 411 ~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~-~~~k~~i~~~g~l 489 (689)
+.+++.+....--|+..|..+...+ -.| +.-+-++.+|.+.-+-++..|+.+|..+... ++. -..++
T Consensus 116 kdl~S~n~ye~giAL~GLS~fvTpd-LAR------DLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA-----lr~~F 183 (877)
T KOG1059|consen 116 KDLNSSNVYEVGLALSGLSCIVTPD-LAR------DLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA-----LRPCF 183 (877)
T ss_pred HHhccCccchhhheecccccccCch-hhH------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh-----HhhhH
Confidence 4445655444445566655554422 222 3445678999999999999999999887532 221 12578
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhccc-CchhHHHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHHhhhh
Q 005598 490 EPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSI 557 (689)
Q Consensus 490 ~~Lv~lL~s~~~~~~~~Aa~aL~nLs~-~~~~k~~I~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~ 557 (689)
+.|..-|.++++.++..|+.+++.|+. ++.+-- ..-|.+.++|... +.-+....+....+|+-
T Consensus 184 prL~EkLeDpDp~V~SAAV~VICELArKnPknyL-----~LAP~ffkllttSsNNWmLIKiiKLF~aLtp 248 (877)
T KOG1059|consen 184 PRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL-----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTP 248 (877)
T ss_pred HHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc-----cccHHHHHHHhccCCCeehHHHHHHHhhccc
Confidence 999999999999999999999999986 444322 2235555555432 34444445555555554
No 169
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.61 E-value=0.8 Score=53.56 Aligned_cols=253 Identities=13% Similarity=0.136 Sum_probs=138.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc-CCcc----
Q 005598 405 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI-NDNN---- 479 (689)
Q Consensus 405 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~-~~~~---- 479 (689)
.+..|.+.|++.+..++-.|+..|.+++.. + .+ ....|-+..+|++.++-++..|+.++..+-. .++.
T Consensus 108 ltNslknDL~s~nq~vVglAL~alg~i~s~--E---ma--rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f 180 (866)
T KOG1062|consen 108 LTNSLKNDLNSSNQYVVGLALCALGNICSP--E---MA--RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF 180 (866)
T ss_pred HHHHHHhhccCCCeeehHHHHHHhhccCCH--H---Hh--HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh
Confidence 556777888899988888899999888662 2 11 1456777788889999999999998887753 2322
Q ss_pred ----HHHHHHc--C----CHHHHHHHHcCCCH------HHHHHHHHHHHhcccC---chh-----HHHHHhhCChHHHHH
Q 005598 480 ----KSAIANA--N----AIEPLIHVLQTGSP------EARENAAATLFSLSVI---EDN-----KIKIGRSGAIGPLVD 535 (689)
Q Consensus 480 ----k~~i~~~--g----~l~~Lv~lL~s~~~------~~~~~Aa~aL~nLs~~---~~~-----k~~I~~~g~I~~Lv~ 535 (689)
+..+.+. | ++..+.++++.+.. .+...-+..|.++... +++ ...+.+-. +=.++.
T Consensus 181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~-iLrlLr 259 (866)
T KOG1062|consen 181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIR-ILRLLR 259 (866)
T ss_pred hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHH-HHHHHH
Confidence 2233321 2 33333444433211 1222223333333220 000 00000000 011333
Q ss_pred hhcCCCHHHHHHHHHHHHhhhhch---HHHHHHHHhCcHHHHHHhcCCChHHHHHHHHHHHHHhCCchhH-HH-------
Q 005598 536 LLGNGTPRGKKDAATALFNLSIYH---ENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGR-VA------- 604 (689)
Q Consensus 536 LL~~~~~~v~~~Al~aL~nLs~~~---~n~~~lv~~G~v~~Lv~LL~~~~~v~e~Al~~L~nLa~~~e~r-~~------- 604 (689)
+|..++++....-...|..++.+. .|....+--.+|..++.+ .++..+...|+.+|+....+++.- ..
T Consensus 260 iLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I-~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~ 338 (866)
T KOG1062|consen 260 ILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDI-RSNSGLRVLAINILGKFLLNRDNNIRYVALNMLL 338 (866)
T ss_pred HhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhc-cCCchHHHHHHHHHHHHhcCCccceeeeehhhHH
Confidence 444455555555555555555422 233333333444444444 466778888888888876655431 11
Q ss_pred -HH--hcCcH----HHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHH
Q 005598 605 -IG--QENGI----PVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQA 673 (689)
Q Consensus 605 -i~--~~g~v----~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~ 673 (689)
++ +..++ ..+++.|+..+...+..|...++.|...+ +...+ +..|+.+|...++..|...+.
T Consensus 339 r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~--Nv~~m-----v~eLl~fL~~~d~~~k~~~as 407 (866)
T KOG1062|consen 339 RVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNES--NVRVM-----VKELLEFLESSDEDFKADIAS 407 (866)
T ss_pred hhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc--cHHHH-----HHHHHHHHHhccHHHHHHHHH
Confidence 11 12222 35667777778888888888888777554 33333 456777777777777765444
No 170
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=95.55 E-value=0.16 Score=48.66 Aligned_cols=118 Identities=15% Similarity=0.152 Sum_probs=93.7
Q ss_pred HHHHHHhCcHHHHHHhcC-CC------hHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccC--CHHHHHHHHHH
Q 005598 562 KARIVQAGAVKHLVDLMD-PA------AGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG--SARGKENAAAA 632 (689)
Q Consensus 562 ~~~lv~~G~v~~Lv~LL~-~~------~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~--s~~~~e~Av~a 632 (689)
...++..|++..|+++++ .. ..+...++.++..|-.+.-.-=.......|..++..+... +..+...|..+
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 356788999999999993 22 3566778888888877654222345556788888888653 58889999999
Q ss_pred HHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 005598 633 LLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 679 (689)
Q Consensus 633 L~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~ 679 (689)
|-+++.+++..-..+.++=-++.|+..++..++.++.+|..++..|-
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~ 130 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALF 130 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999999977788878888999999999999999999999887765
No 171
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.011 Score=60.90 Aligned_cols=47 Identities=15% Similarity=0.403 Sum_probs=38.0
Q ss_pred ccccccccccc--Cce-ecCCCccccHHHHHHHHhcCCCCCCCCCCcCCC
Q 005598 101 FCCPLSLELMT--DPV-IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 147 (689)
Q Consensus 101 f~CpI~~~lm~--dPV-~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~ 147 (689)
.-|-||+.=|. |-+ ++||.|.|-+.||++|+..-...||+||.++.+
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 57999986552 444 589999999999999998655679999988754
No 172
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.43 E-value=1.1 Score=48.11 Aligned_cols=177 Identities=18% Similarity=0.229 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHhhcCCccHHHHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHhcccC---chhHHHHHhhCChHHHH
Q 005598 460 TKIQENAVTALLNLSINDNNKSAIAN--ANAIEPLIHVLQTGSPEARENAAATLFSLSVI---EDNKIKIGRSGAIGPLV 534 (689)
Q Consensus 460 ~~v~~~Al~aL~nLs~~~~~k~~i~~--~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~---~~~k~~I~~~g~I~~Lv 534 (689)
...++.++..|.++.........+.+ ...+..+.+.++.+..+-+..|+.++.-++.. ......+.+ ...+.|.
T Consensus 57 ~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~~~~~L~ 135 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE-ELKPVLK 135 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH-HHHHHHH
Confidence 34445555555444322222222221 23567778888888765555666666555443 222333333 4667888
Q ss_pred HhhcCCC--HHHHHHHHHHHHhhhhch----HHHHHHHHhCcHHHHHH--hcC-----------CChHHHHHHHHHHHHH
Q 005598 535 DLLGNGT--PRGKKDAATALFNLSIYH----ENKARIVQAGAVKHLVD--LMD-----------PAAGMVDKAVAVLANL 595 (689)
Q Consensus 535 ~LL~~~~--~~v~~~Al~aL~nLs~~~----~n~~~lv~~G~v~~Lv~--LL~-----------~~~~v~e~Al~~L~nL 595 (689)
..+.++. ..++..++.+|.-++... +..... ...+..+.. .+. +...++..|+..++.|
T Consensus 136 ~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~--~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lL 213 (309)
T PF05004_consen 136 RILTDSSASPKARAACLEALAICTFVGGSDEEETEEL--MESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALL 213 (309)
T ss_pred HHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHH--HHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHH
Confidence 8888764 455556666666554421 111111 112221111 111 1245788899999888
Q ss_pred hCCchh-HHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhC
Q 005598 596 ATIPDG-RVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 639 (689)
Q Consensus 596 a~~~e~-r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~ 639 (689)
...-+. .-.-.-...++.|+.+|.+.+..+|..|..+|.-|...
T Consensus 214 lt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 214 LTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 874333 21212234689999999999999999988888776543
No 173
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=95.42 E-value=1.8 Score=48.91 Aligned_cols=273 Identities=14% Similarity=0.108 Sum_probs=146.5
Q ss_pred hhHHHH-HHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCccH
Q 005598 403 ETQVRK-LVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-ETKIQENAVTALLNLSINDNNK 480 (689)
Q Consensus 403 ~~~V~~-Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~-~~~v~~~Al~aL~nLs~~~~~k 480 (689)
+..|+. .++-|++..+.....|+..|..++.-.-.+ -.-.|....++...... ...++..++.++++.+......
T Consensus 92 k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~---~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe 168 (858)
T COG5215 92 KEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPN---SLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPE 168 (858)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCcc---ccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHH
Confidence 345554 456778888888888888888887632111 00113333344433332 3457888999999998776665
Q ss_pred HHHHHcC-CHHHHH-HHHcCC-CHHHHHHHHHHHHh-cccCchhHHHHHhh----CChHHHHHhhcCCCHHHHHHHHHHH
Q 005598 481 SAIANAN-AIEPLI-HVLQTG-SPEARENAAATLFS-LSVIEDNKIKIGRS----GAIGPLVDLLGNGTPRGKKDAATAL 552 (689)
Q Consensus 481 ~~i~~~g-~l~~Lv-~lL~s~-~~~~~~~Aa~aL~n-Ls~~~~~k~~I~~~----g~I~~Lv~LL~~~~~~v~~~Al~aL 552 (689)
..+...+ .+-.++ ..++++ +..+|..|+.+|.+ |-.. +..+... -++...++.-+.++.+++.+|..+|
T Consensus 169 ~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv---~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl 245 (858)
T COG5215 169 DLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFV---QGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCL 245 (858)
T ss_pred HHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHH---HHhhcchhhhchhheeeehhccCCcHHHHHHHHHHH
Confidence 5554443 333343 345554 46789999999887 3221 1122111 1233344444556778888888888
Q ss_pred Hhhhh-chHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCc-hhHHHHHh----------------cCcHHH
Q 005598 553 FNLSI-YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIP-DGRVAIGQ----------------ENGIPV 613 (689)
Q Consensus 553 ~nLs~-~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~-e~r~~i~~----------------~g~v~~ 613 (689)
..+.. +=..-....+.-....+...+ +.+..+...|+..+..+|..+ ++.-++.. ..++|.
T Consensus 246 ~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~ 325 (858)
T COG5215 246 NKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPE 325 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHH
Confidence 77654 112112223332333333334 455666667777776666522 11111111 124666
Q ss_pred HHHHhcc---------------------------------------------CCHHHHHHHHHHHHHHhhCCHhhHHHHH
Q 005598 614 LVEVVEL---------------------------------------------GSARGKENAAAALLQLCTNSSRFCSMVL 648 (689)
Q Consensus 614 Lv~lL~s---------------------------------------------~s~~~~e~Av~aL~~L~~~~~~~~~~lv 648 (689)
|+.+|.+ .+...++.|+.++..+..+....+..-+
T Consensus 326 lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~ 405 (858)
T COG5215 326 LLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKI 405 (858)
T ss_pred HHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhh
Confidence 6666643 2222334444444444433222222222
Q ss_pred hCCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 005598 649 QEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 681 (689)
Q Consensus 649 ~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~~ 681 (689)
-..++|.+..++...+--++..++|++..+..+
T Consensus 406 V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 406 VPQALPGIENEMSDSCLWVKSTTAWCFGAIADH 438 (858)
T ss_pred HHhhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence 234567777777766667888888888777653
No 174
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.40 E-value=1 Score=45.97 Aligned_cols=146 Identities=16% Similarity=0.153 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcC-----CCHHHHHHHHHHHHHhhcCC--ccHHHHHHcCCHHHH
Q 005598 420 TQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-----SETKIQENAVTALLNLSIND--NNKSAIANANAIEPL 492 (689)
Q Consensus 420 ~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s-----~~~~v~~~Al~aL~nLs~~~--~~k~~i~~~g~l~~L 492 (689)
-..+|+..+.-++. .++.|..|.++-.--.|-.+|.. ..+-++..++.+++.|...+ +....+...+.++..
T Consensus 95 RVcnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 95 RVCNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred hHHHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 34567777777787 46888888887665556666643 35668899999999997543 344556678999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhh--------CChHHH-HHhhcCCCHHHHHHHHHHHHhhhhchHHHH
Q 005598 493 IHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS--------GAIGPL-VDLLGNGTPRGKKDAATALFNLSIYHENKA 563 (689)
Q Consensus 493 v~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~--------g~I~~L-v~LL~~~~~~v~~~Al~aL~nLs~~~~n~~ 563 (689)
++++..|+...+..|+.++-.+-.++..-..|+.. -.+..+ ..+.+.++.+..+.++++..+|+.++..+.
T Consensus 174 Lrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~ 253 (293)
T KOG3036|consen 174 LRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARA 253 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999998887777654443321 223333 344456789999999999999999888776
Q ss_pred HHH
Q 005598 564 RIV 566 (689)
Q Consensus 564 ~lv 566 (689)
.+.
T Consensus 254 aL~ 256 (293)
T KOG3036|consen 254 ALR 256 (293)
T ss_pred HHH
Confidence 543
No 175
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.33 E-value=0.66 Score=54.82 Aligned_cols=167 Identities=20% Similarity=0.179 Sum_probs=116.5
Q ss_pred hcCCCHHHHHHHHHH-HHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHH
Q 005598 413 LKSTSLDTQREATAE-LRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEP 491 (689)
Q Consensus 413 L~s~~~~~q~~Al~~-L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~ 491 (689)
+.+++...+..|++. |..++.+.+ .- ...+-+++...+.|.+++.-.-.=|.+.+...... .+. ++..
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d-ms------sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~-~lL---avNt 96 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED-MS------SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL-ALL---AVNT 96 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC-hH------HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH-HHH---HHHH
Confidence 667777778888874 445555432 11 23455666666778777765555555555433221 111 3566
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcH
Q 005598 492 LIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAV 571 (689)
Q Consensus 492 Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v 571 (689)
+.+=|+++++.+|..|++++..|=. ... ..-+++++.+++.++++.+++.|+.|++++-.- .+....+.|.+
T Consensus 97 i~kDl~d~N~~iR~~AlR~ls~l~~----~el--~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~~l~~~~g~~ 168 (757)
T COG5096 97 IQKDLQDPNEEIRGFALRTLSLLRV----KEL--LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DKDLYHELGLI 168 (757)
T ss_pred HHhhccCCCHHHHHHHHHHHHhcCh----HHH--HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CHhhhhcccHH
Confidence 7777889999999999999987721 111 124678899999999999999999999998542 34455678888
Q ss_pred HHHHHhc-CCChHHHHHHHHHHHHHhCC
Q 005598 572 KHLVDLM-DPAAGMVDKAVAVLANLATI 598 (689)
Q Consensus 572 ~~Lv~LL-~~~~~v~e~Al~~L~nLa~~ 598 (689)
..+..++ ++++.++..|+.+|..+...
T Consensus 169 ~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 169 DILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 8888888 78888889999999988654
No 176
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.33 E-value=0.031 Score=43.42 Aligned_cols=55 Identities=24% Similarity=0.149 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 005598 460 TKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSL 514 (689)
Q Consensus 460 ~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nL 514 (689)
+.++..|+++|++++........-.....++.|+.+|++.+..+|..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4688999999999875554444445567899999999999999999999999875
No 177
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.32 E-value=0.91 Score=53.15 Aligned_cols=242 Identities=15% Similarity=0.156 Sum_probs=157.6
Q ss_pred cccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHH-HhhcCCccHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHh
Q 005598 436 MDNRMVIANCGAINILVDMLHSSETKIQENAVTALL-NLSINDNNKSAIANANAIEPLIHVLQTGS-PEARENAAATLFS 513 (689)
Q Consensus 436 ~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~-nLs~~~~~k~~i~~~g~l~~Lv~lL~s~~-~~~~~~Aa~aL~n 513 (689)
..-|...++.|+...|+.+.....+.....+..+|. .+... ..+ ....++++...+.+.. .--...++.++.|
T Consensus 494 K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~-~~~----~~~v~~~~~s~~~~d~~~~en~E~L~altn 568 (748)
T KOG4151|consen 494 KYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFP-GER----SYEVVKPLDSALHNDEKGLENFEALEALTN 568 (748)
T ss_pred HHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCC-CCc----hhhhhhhhcchhhhhHHHHHHHHHHHHhhc
Confidence 345666777899999999988777777777777776 22211 000 1133444444443221 1123457788889
Q ss_pred cccC-chhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHH-H-hCcHHHHHHhcCC-ChHHHHHHH
Q 005598 514 LSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIV-Q-AGAVKHLVDLMDP-AAGMVDKAV 589 (689)
Q Consensus 514 Ls~~-~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv-~-~G~v~~Lv~LL~~-~~~v~e~Al 589 (689)
|+.. +..|..|...-+++.+-.++-..++..+..++..+.||...+-.-.+.+ + ...++.....++. .......++
T Consensus 569 Las~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a 648 (748)
T KOG4151|consen 569 LASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGA 648 (748)
T ss_pred ccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhcc
Confidence 9874 4457778777666666777778899999999999999998776655444 3 3455555555532 233334555
Q ss_pred HHHHHHhCCchh-HH-HHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHH
Q 005598 590 AVLANLATIPDG-RV-AIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRA 667 (689)
Q Consensus 590 ~~L~nLa~~~e~-r~-~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~v 667 (689)
+++..++...++ .. ...-......++.++.+.++.+++..+.+.+++.....+....+.+...++.+..+-+-.....
T Consensus 649 ~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~~ 728 (748)
T KOG4151|consen 649 GALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNRAPK 728 (748)
T ss_pred ccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhhhhh
Confidence 666655554433 22 2223456788899999999999999999999977777777777777777666666544445667
Q ss_pred HHHHHHHHHHhhcCc
Q 005598 668 KEKAQALLSYFRNQR 682 (689)
Q Consensus 668 r~~A~~lL~~L~~~~ 682 (689)
++.|...|...-.+.
T Consensus 729 ~~~~~~~l~~a~~~~ 743 (748)
T KOG4151|consen 729 REDAAPCLSAAEEYG 743 (748)
T ss_pred hhhhhhHHHHHHHhh
Confidence 777777766655443
No 178
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.29 E-value=2.1 Score=51.33 Aligned_cols=238 Identities=18% Similarity=0.196 Sum_probs=143.9
Q ss_pred HHhcCcHHHHHHhhcC-----CCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHc----CCC----HHHHHHHH
Q 005598 442 IANCGAINILVDMLHS-----SETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQ----TGS----PEARENAA 508 (689)
Q Consensus 442 i~~~g~I~~Lv~lL~s-----~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~----s~~----~~~~~~Aa 508 (689)
+.+.|++..|+.++.+ ....+....+.+|...+.-..||..+.+.++++.|+..|. .+. .++.+...
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 4567999999999875 2345566667777777777899999999999999998775 333 56666666
Q ss_pred HHHHhcccCch---hHHHHH--h--------hCChHHHHHhhcCC----CHHHHHHHHHHHHhhhhchHHHHHHHHhCcH
Q 005598 509 ATLFSLSVIED---NKIKIG--R--------SGAIGPLVDLLGNG----TPRGKKDAATALFNLSIYHENKARIVQAGAV 571 (689)
Q Consensus 509 ~aL~nLs~~~~---~k~~I~--~--------~g~I~~Lv~LL~~~----~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v 571 (689)
.++..|..... ...... . ..-+..|++.+.+. ++.+....+++|-+|+.....+...+-.-.
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F- 271 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHF- 271 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHH-
Confidence 66665543211 111110 1 12356666666644 578888899999999986655433221111
Q ss_pred HHHHHh--cCC-C---h-HHHHHHHHHHHHHhCCchh---HHHHHhcCcHHHHHHHhccC--------CHHHH-------
Q 005598 572 KHLVDL--MDP-A---A-GMVDKAVAVLANLATIPDG---RVAIGQENGIPVLVEVVELG--------SARGK------- 626 (689)
Q Consensus 572 ~~Lv~L--L~~-~---~-~v~e~Al~~L~nLa~~~e~---r~~i~~~g~v~~Lv~lL~s~--------s~~~~------- 626 (689)
...+++ ++. . . -..+..+.+...|-.+..| ++.+++.|++...++.|... ++.-+
T Consensus 272 ~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ps 351 (802)
T PF13764_consen 272 KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPS 351 (802)
T ss_pred HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCc
Confidence 111122 111 1 1 1122233333334333333 68889999999888888532 23222
Q ss_pred -HHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCC-HHHHHHHHHHHHHhhcC
Q 005598 627 -ENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGT-PRAKEKAQALLSYFRNQ 681 (689)
Q Consensus 627 -e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~-~~vr~~A~~lL~~L~~~ 681 (689)
..+...|.-||.+... .+.++..++++.|..|=+... ..+-..|-.+|.-|+..
T Consensus 352 Lp~iL~lL~GLa~gh~~-tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~ 407 (802)
T PF13764_consen 352 LPYILRLLRGLARGHEP-TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAEN 407 (802)
T ss_pred HHHHHHHHHHHHhcCHH-HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcC
Confidence 3477788888888764 344466677876666655553 45555666677777654
No 179
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.94 E-value=1.4 Score=50.93 Aligned_cols=105 Identities=15% Similarity=0.153 Sum_probs=66.8
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCC--HHHHHHHHHHHHHhhcCCccH
Q 005598 403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSE--TKIQENAVTALLNLSINDNNK 480 (689)
Q Consensus 403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~--~~v~~~Al~aL~nLs~~~~~k 480 (689)
+..+..+-+.|.+.++..+.-|+.++.++... +++..+. .-|+ ++|.+.+ .-|+..|+-+|+.|-.. .-
T Consensus 110 klvin~iknDL~srn~~fv~LAL~~I~niG~r--e~~ea~~--~DI~---KlLvS~~~~~~vkqkaALclL~L~r~--sp 180 (938)
T KOG1077|consen 110 KLVINSIKNDLSSRNPTFVCLALHCIANIGSR--EMAEAFA--DDIP---KLLVSGSSMDYVKQKAALCLLRLFRK--SP 180 (938)
T ss_pred HHHHHHHHhhhhcCCcHHHHHHHHHHHhhccH--hHHHHhh--hhhH---HHHhCCcchHHHHHHHHHHHHHHHhc--Cc
Confidence 45667777888889988889999999998653 3444332 2333 5555543 34666777777666422 11
Q ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 005598 481 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV 516 (689)
Q Consensus 481 ~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~ 516 (689)
..+--.+....++.+|.+.+..+...+...|..|+.
T Consensus 181 Dl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk 216 (938)
T KOG1077|consen 181 DLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVK 216 (938)
T ss_pred cccChhhHHHHHHHHhCccccceeeehHHHHHHHHH
Confidence 122223567778888887777766667776666654
No 180
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=0.034 Score=58.36 Aligned_cols=53 Identities=15% Similarity=0.182 Sum_probs=43.8
Q ss_pred CCCCC--CccccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCC
Q 005598 94 PVPIP--SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 147 (689)
Q Consensus 94 ~~~~p--~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~ 147 (689)
..+.| ++=+||||..=--..|..||||.-|..||.+|+.+. ..|=+|+.....
T Consensus 414 ~~~lp~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~-k~CFfCktTv~~ 468 (489)
T KOG4692|consen 414 NKDLPDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNC-KRCFFCKTTVID 468 (489)
T ss_pred cCCCCCcccccCcceecccchhhccCCCCchHHHHHHHHHhcC-CeeeEecceeee
Confidence 34455 578999999888888999999999999999999865 569999776543
No 181
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.88 E-value=0.009 Score=64.68 Aligned_cols=43 Identities=26% Similarity=0.560 Sum_probs=36.7
Q ss_pred cccccccccccCce----ecCCCccccHHHHHHHHhcCCCCCCCCCCcCC
Q 005598 101 FCCPLSLELMTDPV----IVASGQTYERAFIKKWIDLGLFVCPKTRQTLA 146 (689)
Q Consensus 101 f~CpI~~~lm~dPV----~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~ 146 (689)
-+||+|++=|.+-| ++.|.|+|--.|+.+|+. .+||+||--.+
T Consensus 176 PTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~ 222 (493)
T KOG0804|consen 176 PTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS 222 (493)
T ss_pred CCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence 48999999999887 368999999999999986 45999986544
No 182
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=0.018 Score=61.80 Aligned_cols=43 Identities=26% Similarity=0.587 Sum_probs=37.8
Q ss_pred cccccccccccC---ceecCCCccccHHHHHHHHhcCC--CCCCCCCC
Q 005598 101 FCCPLSLELMTD---PVIVASGQTYERAFIKKWIDLGL--FVCPKTRQ 143 (689)
Q Consensus 101 f~CpI~~~lm~d---PV~~~~G~ty~r~~I~~~l~~~~--~~cP~t~~ 143 (689)
|.|||..+--.| |+.+.|||+.+|.+|.+-...|. ..||.|-.
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 799999987766 88999999999999999998876 56999953
No 183
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.85 E-value=0.086 Score=48.00 Aligned_cols=72 Identities=19% Similarity=0.302 Sum_probs=60.5
Q ss_pred hhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005598 403 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS 474 (689)
Q Consensus 403 ~~~V~~Lv~~L~-s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs 474 (689)
-..++.|++.|. +.++....-|+.-|..+++..|..|..+.+.|+-..+..++.++|++|+.+|+.++..|.
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 357899999995 456666777889999999999999999988999999999999999999999999987663
No 184
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=94.71 E-value=0.14 Score=45.39 Aligned_cols=64 Identities=20% Similarity=0.243 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhhhh-chHHHHHHHHhCcHHHHHHhc--C-CChHHHHHHHHHHHHHhC-CchhHHHHHh
Q 005598 544 GKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLM--D-PAAGMVDKAVAVLANLAT-IPDGRVAIGQ 607 (689)
Q Consensus 544 v~~~Al~aL~nLs~-~~~n~~~lv~~G~v~~Lv~LL--~-~~~~v~e~Al~~L~nLa~-~~e~r~~i~~ 607 (689)
.+...+.+|.||+. ++.++..+.+.|+++.++... + .++-+.+.|+.++.||+. ++++++.+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 35677889999998 667888999999999999986 3 466788999999999998 5566666654
No 185
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.68 E-value=1.3 Score=51.73 Aligned_cols=257 Identities=20% Similarity=0.223 Sum_probs=147.9
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-Cc----
Q 005598 404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DN---- 478 (689)
Q Consensus 404 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~-~~---- 478 (689)
...+.+-.+|++....+..+|++.+..|...+. +.+. .++..|-.++.+..+-++..|+++|..++.- +.
T Consensus 245 ~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~---r~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~ 319 (865)
T KOG1078|consen 245 PLFPFLESCLRHKSEMVIYEAARAIVSLPNTNS---RELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTV 319 (865)
T ss_pred hHHHHHHHHHhchhHHHHHHHHHHHhhccccCH---hhcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccc
Confidence 466777788888888899999999999876432 2222 2788888889899999999999999999742 21
Q ss_pred -c---HHHHHHcC---CHHHHHHHHcCCCHHH----HHHHHHHHHhcccCchhHHHH-------------HhhCChHHHH
Q 005598 479 -N---KSAIANAN---AIEPLIHVLQTGSPEA----RENAAATLFSLSVIEDNKIKI-------------GRSGAIGPLV 534 (689)
Q Consensus 479 -~---k~~i~~~g---~l~~Lv~lL~s~~~~~----~~~Aa~aL~nLs~~~~~k~~I-------------~~~g~I~~Lv 534 (689)
| -..|-+.+ .-..+..+|+.|.... ....+..+.+++. +++..+ -..+.+..|-
T Consensus 320 cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disD--eFKivvvdai~sLc~~fp~k~~~~m~FL~ 397 (865)
T KOG1078|consen 320 CNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISD--EFKIVVVDAIRSLCLKFPRKHTVMMNFLS 397 (865)
T ss_pred cchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc--cceEEeHHHHHHHHhhccHHHHHHHHHHH
Confidence 1 12222221 3445667777776443 3333344444432 222111 0124445555
Q ss_pred HhhcC-CCHHHHHHHHHHHHhhhh-chHHHHHHHHhCcHHHHHHhcCCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHH
Q 005598 535 DLLGN-GTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIP 612 (689)
Q Consensus 535 ~LL~~-~~~~v~~~Al~aL~nLs~-~~~n~~~lv~~G~v~~Lv~LL~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~ 612 (689)
.+|++ +.-+.+++...+|..+.. +++.|.. ++..|.+++. +......+..+|..|... +-....-..-+.
T Consensus 398 ~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIE-Dce~~~i~~rILhlLG~E--gP~a~~Pskyir 469 (865)
T KOG1078|consen 398 NMLREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIE-DCEFTQIAVRILHLLGKE--GPKAPNPSKYIR 469 (865)
T ss_pred HHHHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHH-hccchHHHHHHHHHHhcc--CCCCCCcchhhH
Confidence 55553 234555555555554444 3333322 3334444441 112233444444444321 000001112244
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 005598 613 VLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 680 (689)
Q Consensus 613 ~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~ 680 (689)
.+...+.-.+..++..|+.+|.++...++.. ...+...|...+.+.+..+|+.|...|+.+..
T Consensus 470 ~iyNRviLEn~ivRaaAv~alaKfg~~~~~l-----~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 470 FIYNRVILENAIVRAAAVSALAKFGAQDVVL-----LPSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred HHhhhhhhhhhhhHHHHHHHHHHHhcCCCCc-----cccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 4444444467788888999999988554422 23455567777778889999999999999884
No 186
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.49 E-value=1.7 Score=46.52 Aligned_cols=182 Identities=18% Similarity=0.135 Sum_probs=96.3
Q ss_pred cCCCHHHHHHHHHHHHhcccCchhHHHHHh--hCChHHHHHhhcCCCHHHHHHHHHHHHhhhhc---hHHHHHHHHhCcH
Q 005598 497 QTGSPEARENAAATLFSLSVIEDNKIKIGR--SGAIGPLVDLLGNGTPRGKKDAATALFNLSIY---HENKARIVQAGAV 571 (689)
Q Consensus 497 ~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~--~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~---~~n~~~lv~~G~v 571 (689)
.......|+.++..|..+....-....+.. .-.+..+.+.++.+..+-+..|+.++.-|+.. ......++ ....
T Consensus 53 ~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~-~~~~ 131 (309)
T PF05004_consen 53 TEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF-EELK 131 (309)
T ss_pred HhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH-HHHH
Confidence 334455666666666655432222222222 24577788888888766677777777777664 12333333 3567
Q ss_pred HHHHHhc-CCC--hHHHHHHHHHHHHHhCC-chhHHHHH-hcCcHHHHHH--Hhcc-C---------CHHHHHHHHHHHH
Q 005598 572 KHLVDLM-DPA--AGMVDKAVAVLANLATI-PDGRVAIG-QENGIPVLVE--VVEL-G---------SARGKENAAAALL 634 (689)
Q Consensus 572 ~~Lv~LL-~~~--~~v~e~Al~~L~nLa~~-~e~r~~i~-~~g~v~~Lv~--lL~s-~---------s~~~~e~Av~aL~ 634 (689)
+.|..++ +.. ...+..++.+|+.++.. ...-..+. -...+..+.. .++. + ++.+...|+.+-.
T Consensus 132 ~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~ 211 (309)
T PF05004_consen 132 PVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWA 211 (309)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHH
Confidence 7888877 332 23334555566655441 11111111 0112221111 1221 1 2344555544443
Q ss_pred HHhhCCHh-hHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 005598 635 QLCTNSSR-FCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 680 (689)
Q Consensus 635 ~L~~~~~~-~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~ 680 (689)
-|...-+. .....+ ...++.|..+|.+.+..+|-.|.+.|.+|-.
T Consensus 212 lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 212 LLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 34333332 222222 3468999999999999999999998888743
No 187
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.40 E-value=0.028 Score=56.57 Aligned_cols=50 Identities=18% Similarity=0.280 Sum_probs=41.9
Q ss_pred CccccccccccccCcee----cCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCC
Q 005598 99 SDFCCPLSLELMTDPVI----VASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLI 151 (689)
Q Consensus 99 ~~f~CpI~~~lm~dPV~----~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~ 151 (689)
..|+|||++-.|.+-.. -+|||+|.-.++++.- ...||+|++.+..++.+
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVI 163 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeE
Confidence 46999999999998763 5899999999988874 35699999999987644
No 188
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.38 E-value=0.22 Score=49.58 Aligned_cols=118 Identities=13% Similarity=0.149 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHhhcCCccHHHHHHc----------------CCHHHHHHHHcCC------CHHHHHHHHHHHHhcccCc
Q 005598 461 KIQENAVTALLNLSINDNNKSAIANA----------------NAIEPLIHVLQTG------SPEARENAAATLFSLSVIE 518 (689)
Q Consensus 461 ~v~~~Al~aL~nLs~~~~~k~~i~~~----------------g~l~~Lv~lL~s~------~~~~~~~Aa~aL~nLs~~~ 518 (689)
.....++.+|.||+..+.....+... .++..|+..+..| ...-..+.+.++.|++..+
T Consensus 10 ~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~ 89 (192)
T PF04063_consen 10 PLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLP 89 (192)
T ss_pred chHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCH
Confidence 34566778888888776665544322 3667777666552 2445678899999999999
Q ss_pred hhHHHHHhh--CC--hHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHHh---CcHHHHHHhc
Q 005598 519 DNKIKIGRS--GA--IGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQA---GAVKHLVDLM 578 (689)
Q Consensus 519 ~~k~~I~~~--g~--I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~---G~v~~Lv~LL 578 (689)
+.|..+.+. +. +..|+.++.+.+.--+.-++.+|.|+|...+....++.. ++++.|+--|
T Consensus 90 ~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPL 156 (192)
T PF04063_consen 90 EGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPL 156 (192)
T ss_pred HHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhc
Confidence 999999875 44 777888888776666777888999999988877777763 4445444433
No 189
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=94.33 E-value=1.4 Score=47.82 Aligned_cols=197 Identities=13% Similarity=0.145 Sum_probs=141.7
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHH-----HHHhc--CcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 005598 403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRM-----VIANC--GAINILVDMLHSSETKIQENAVTALLNLSI 475 (689)
Q Consensus 403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~-----~i~~~--g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~ 475 (689)
.+.+..|+..|..-+.+.+..+.....++.+.....+. .+... ..+..|+.-- +++++...+..+|.....
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRec~k 152 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRECIK 152 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHHHTT
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHHHHh
Confidence 46778889999888889899988888888876655543 22221 2333333333 355566677777777777
Q ss_pred CCccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhccc-CchhHHHHHh-h--CChHHHHHhhcCCCHHHHHHHHHH
Q 005598 476 NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGR-S--GAIGPLVDLLGNGTPRGKKDAATA 551 (689)
Q Consensus 476 ~~~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~-~~~~k~~I~~-~--g~I~~Lv~LL~~~~~~v~~~Al~a 551 (689)
++.....+.....+..+...+..++-++...|..++..|-. +......... . .++.....||.+++--+++.++..
T Consensus 153 ~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL 232 (335)
T PF08569_consen 153 HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL 232 (335)
T ss_dssp SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence 77767777888888889999999999999999999988644 4444333333 2 677888999999999999999999
Q ss_pred HHhhhhchHHHHHHHH----hCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchh
Q 005598 552 LFNLSIYHENKARIVQ----AGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDG 601 (689)
Q Consensus 552 L~nLs~~~~n~~~lv~----~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~ 601 (689)
|..|-.+..|...|.. ..-+..++.+| +....++-.|..++.....+|..
T Consensus 233 L~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K 287 (335)
T PF08569_consen 233 LGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNK 287 (335)
T ss_dssp HHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-
T ss_pred HHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCC
Confidence 9999999888765544 56788888888 67788899999999988776543
No 190
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.29 E-value=3.8 Score=48.16 Aligned_cols=207 Identities=16% Similarity=0.147 Sum_probs=131.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHH-hhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHH
Q 005598 407 RKLVEDLKSTSLDTQREATAELRL-LAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIAN 485 (689)
Q Consensus 407 ~~Lv~~L~s~~~~~q~~Al~~L~~-La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~ 485 (689)
..|..+|.+.....+..|...|.. ++++. .. ...+|..++...+.+.+++.-.---|...+....+-..
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~-dv------S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL--- 107 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGK-DV------SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL--- 107 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCC-cH------HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee---
Confidence 567788888887888888885554 45532 21 24577888888888988877655445555533222111
Q ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhc-hHHHHH
Q 005598 486 ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKAR 564 (689)
Q Consensus 486 ~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~-~~n~~~ 564 (689)
=-|..+-+-|+++++.+|..|+++|..+- ..+...=++-++-+...+..+.+++.|+.||-.|-.- ++.+.+
T Consensus 108 -LSIntfQk~L~DpN~LiRasALRvlSsIR------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~q 180 (968)
T KOG1060|consen 108 -LSINTFQKALKDPNQLIRASALRVLSSIR------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQ 180 (968)
T ss_pred -eeHHHHHhhhcCCcHHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHH
Confidence 13566778899999999999999998772 1111111122233344567899999999999988663 343333
Q ss_pred HHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhC
Q 005598 565 IVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 639 (689)
Q Consensus 565 lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~ 639 (689)
.+..+-.|| +.+..++-.|+.+...+|- +. -.++ ++-...|-.+|...++..|-..+..|..-|+.
T Consensus 181 -----L~e~I~~LLaD~splVvgsAv~AF~evCP--er-ldLI-HknyrklC~ll~dvdeWgQvvlI~mL~RYAR~ 247 (968)
T KOG1060|consen 181 -----LEEVIKKLLADRSPLVVGSAVMAFEEVCP--ER-LDLI-HKNYRKLCRLLPDVDEWGQVVLINMLTRYARH 247 (968)
T ss_pred -----HHHHHHHHhcCCCCcchhHHHHHHHHhch--hH-HHHh-hHHHHHHHhhccchhhhhHHHHHHHHHHHHHh
Confidence 334555566 5666677777777777664 22 2222 23356666777667777777777777666653
No 191
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.21 E-value=0.024 Score=60.83 Aligned_cols=62 Identities=19% Similarity=0.469 Sum_probs=50.1
Q ss_pred ccccccccccccCce-----ecCCCccccHHHHHHHHhcC-CCCCCCCCCcCCCCCCCccHHHHHHHH
Q 005598 100 DFCCPLSLELMTDPV-----IVASGQTYERAFIKKWIDLG-LFVCPKTRQTLAHTTLIPNYTVKALIA 161 (689)
Q Consensus 100 ~f~CpI~~~lm~dPV-----~~~~G~ty~r~~I~~~l~~~-~~~cP~t~~~l~~~~l~pn~~l~~~i~ 161 (689)
..+||||++-..=|+ ++.|||-|--.||++|+... ...||.|.-.-+..++.|-+.+|...+
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa~ 71 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQAM 71 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHHH
Confidence 468999999887775 57899999999999999522 234999998888888999888876544
No 192
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=94.19 E-value=4.1 Score=46.25 Aligned_cols=226 Identities=12% Similarity=0.029 Sum_probs=135.7
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHH----cCC-CHHHHHHHHHHHHhcccCchhHHHHHh
Q 005598 452 VDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVL----QTG-SPEARENAAATLFSLSVIEDNKIKIGR 526 (689)
Q Consensus 452 v~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL----~s~-~~~~~~~Aa~aL~nLs~~~~~k~~I~~ 526 (689)
++.|.+..++.-..|..+|..++.-+ .-.+..|-|+..+ ..+ ....+.+++.++.+.+........+..
T Consensus 100 l~aL~s~epr~~~~Aaql~aaIA~~E------lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~ 173 (858)
T COG5215 100 LRALKSPEPRFCTMAAQLLAAIARME------LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQM 173 (858)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHhh------CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHH
Confidence 45566666776666777776665221 0123444444433 333 356888999999999887666555544
Q ss_pred h-CChHHHHH-hhcCC-CHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-----CCChHHHHHHHHHHHHHhC-
Q 005598 527 S-GAIGPLVD-LLGNG-TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-----DPAAGMVDKAVAVLANLAT- 597 (689)
Q Consensus 527 ~-g~I~~Lv~-LL~~~-~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-----~~~~~v~e~Al~~L~nLa~- 597 (689)
. .++-.++. -++.+ +..++.+|+.+|.+-+. ..+..+..++-...++... .++.++...|.++|..|..
T Consensus 174 sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~--fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~L 251 (858)
T COG5215 174 SNVILFAIVMGALKNETTSAVRLAALKALMDSLM--FVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMML 251 (858)
T ss_pred hhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH--HHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHH
Confidence 4 33333333 34544 67888899999998322 2233344445445555544 3567888899999887754
Q ss_pred CchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHh----------------CCChHHHHHhhh
Q 005598 598 IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQ----------------EGAVPPLVALSQ 661 (689)
Q Consensus 598 ~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~----------------~g~i~~L~~LL~ 661 (689)
.-.--+...+..........+++.++.+...|+..-..+|...-+.--.+.+ ..++|-|+.||.
T Consensus 252 yY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~ 331 (858)
T COG5215 252 YYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLE 331 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHH
Confidence 1111223333333455566678899999999998876777654321111111 236888999987
Q ss_pred cCC------H-HHHHHHHHHHHHhhcCcCCC
Q 005598 662 SGT------P-RAKEKAQALLSYFRNQRHGN 685 (689)
Q Consensus 662 ~~~------~-~vr~~A~~lL~~L~~~~~~~ 685 (689)
..+ . .+...|..+|.++.....++
T Consensus 332 ~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~ 362 (858)
T COG5215 332 KQGEDYYGDDWNPSMAASSCLQLFAQLKGDK 362 (858)
T ss_pred hcCCCccccccchhhhHHHHHHHHHHHhhhH
Confidence 632 1 36677888998887654443
No 193
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.13 E-value=0.31 Score=42.92 Aligned_cols=68 Identities=16% Similarity=0.215 Sum_probs=55.4
Q ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHh--CCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 005598 609 NGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQ--EGAVPPLVALSQSGTPRAKEKAQALLSYFR 679 (689)
Q Consensus 609 g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~--~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~ 679 (689)
..++.++..+...+.+++..|+.+|++++.... ..++. ..++..|..++...++.+|..|.-+-++|+
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~---~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVAR---GEILPYFNEIFDALCKLSADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 467889999999999999999999999997654 23332 467889999999999999988877766654
No 194
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=94.11 E-value=0.8 Score=52.04 Aligned_cols=233 Identities=13% Similarity=0.115 Sum_probs=126.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc---HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHH-
Q 005598 448 INILVDMLHSSETKIQENAVTALLNLSINDNN---KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIK- 523 (689)
Q Consensus 448 I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~---k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~- 523 (689)
|..++.+|++..+.++..|+.....|+.--.+ -..+...| ..|.+-|....+++.-..+.+++.+......+..
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mq 683 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQ 683 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccC
Confidence 44455677788888888888887777522111 11122212 2244556666788877777777777543332211
Q ss_pred HHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHH-hCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchh
Q 005598 524 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ-AGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDG 601 (689)
Q Consensus 524 I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~-~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~ 601 (689)
---.|++|.|..+|++....+..+....+..+|.+.....-..+ -.+.--|+++| +.++++...|...++.++..-..
T Consensus 684 pPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP 763 (975)
T COG5181 684 PPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGP 763 (975)
T ss_pred CchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH
Confidence 11248999999999999999999998888888875432211111 11222345555 44566666666555554431110
Q ss_pred ----------------HH---------HHHhcC----cHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHh-hHHHHHhCC
Q 005598 602 ----------------RV---------AIGQEN----GIPVLVEVVELGSARGKENAAAALLQLCTNSSR-FCSMVLQEG 651 (689)
Q Consensus 602 ----------------r~---------~i~~~g----~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~-~~~~lv~~g 651 (689)
++ .+.+.. ++|.|+.=-...+..+|.-...+++.+-..-.+ ....+ .-
T Consensus 764 qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYv--y~ 841 (975)
T COG5181 764 QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYV--YS 841 (975)
T ss_pred HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHH--HH
Confidence 00 111221 223332222334556666555555554433221 11111 12
Q ss_pred ChHHHHHhhhcCCHHHHHHHHHHHHHhhcCcCC
Q 005598 652 AVPPLVALSQSGTPRAKEKAQALLSYFRNQRHG 684 (689)
Q Consensus 652 ~i~~L~~LL~~~~~~vr~~A~~lL~~L~~~~~~ 684 (689)
+.|.|-..|...++.-|.-|..++++|.=...|
T Consensus 842 itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~g 874 (975)
T COG5181 842 ITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPG 874 (975)
T ss_pred hhHHHHhhhcccchHHHHHHHHHHHHHhcCCCC
Confidence 345555566666777777888888887654433
No 195
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=93.96 E-value=5.8 Score=43.80 Aligned_cols=96 Identities=13% Similarity=0.244 Sum_probs=75.4
Q ss_pred HHH-cCCHHHHHHHHcCCC---HHHHHHHHHHHHhcccCchh-HHHHHhhCChHHHHHhhc-CC---CHHHHHHHHHHHH
Q 005598 483 IAN-ANAIEPLIHVLQTGS---PEARENAAATLFSLSVIEDN-KIKIGRSGAIGPLVDLLG-NG---TPRGKKDAATALF 553 (689)
Q Consensus 483 i~~-~g~l~~Lv~lL~s~~---~~~~~~Aa~aL~nLs~~~~~-k~~I~~~g~I~~Lv~LL~-~~---~~~v~~~Al~aL~ 553 (689)
+++ ...+..|..++++.. ..+...|+.++..+..++.. -..|.+.|.++.+++.+. .+ +.++....-.+|.
T Consensus 101 l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~ 180 (379)
T PF06025_consen 101 LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLS 180 (379)
T ss_pred ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHh
Confidence 444 455666777887753 66778888888888765554 445666799999999988 54 5677777777999
Q ss_pred hhhhchHHHHHHHHhCcHHHHHHhc
Q 005598 554 NLSIYHENKARIVQAGAVKHLVDLM 578 (689)
Q Consensus 554 nLs~~~~n~~~lv~~G~v~~Lv~LL 578 (689)
.||.+......+.+.+.++.+++++
T Consensus 181 AicLN~~Gl~~~~~~~~l~~~f~if 205 (379)
T PF06025_consen 181 AICLNNRGLEKVKSSNPLDKLFEIF 205 (379)
T ss_pred HHhcCHHHHHHHHhcChHHHHHHHh
Confidence 9999999999999999999999988
No 196
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=93.75 E-value=1.8 Score=47.50 Aligned_cols=246 Identities=17% Similarity=0.185 Sum_probs=137.0
Q ss_pred hhhHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcC-CCH-HHHHHHHHHHHHhhcCCc
Q 005598 402 IETQVRKLVEDLKS-TSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SET-KIQENAVTALLNLSINDN 478 (689)
Q Consensus 402 ~~~~V~~Lv~~L~s-~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s-~~~-~v~~~Al~aL~nLs~~~~ 478 (689)
..+.|..++..|.+ .....++.++-.|..-+. ++..|..+..+|.+..++..+.. .+. ..-..++.++.-++.+..
T Consensus 19 f~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~ 97 (361)
T PF07814_consen 19 FADEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL 97 (361)
T ss_pred HHHHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc
Confidence 35678888888883 345667777777777777 67899999999999999999944 333 233344444555555555
Q ss_pred cHHHHHHcCCHHHHHHHHcCCCH-HHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhc---------CCCHHHHHHH
Q 005598 479 NKSAIANANAIEPLIHVLQTGSP-EARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG---------NGTPRGKKDA 548 (689)
Q Consensus 479 ~k~~i~~~g~l~~Lv~lL~s~~~-~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~---------~~~~~v~~~A 548 (689)
.-..+.+.+.+..++++|..... ......- .....+-..+ ....+..+.+++. ......+..|
T Consensus 98 ~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk~-~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~la 170 (361)
T PF07814_consen 98 NMHLLLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSKV-QQKSRSLCKELLSSGSSWKSPKPPELSPQTLA 170 (361)
T ss_pred chhhhhchhHHHHHHHHhccccccccccchh------hhhhhhhhHH-HHHHHHHHHHHHhccccccccCCcccccccHH
Confidence 55555566677777888871100 0000000 0000000000 0111222222221 1122344455
Q ss_pred HHHHHhhhh------------c---hHHHHHHHHhCcHHHHHHhcC----CC-------------hHHHHHHHHHHHHHh
Q 005598 549 ATALFNLSI------------Y---HENKARIVQAGAVKHLVDLMD----PA-------------AGMVDKAVAVLANLA 596 (689)
Q Consensus 549 l~aL~nLs~------------~---~~n~~~lv~~G~v~~Lv~LL~----~~-------------~~v~e~Al~~L~nLa 596 (689)
+.+|..++. . +--+..+...|++..+++++. .. -...+.++.+|.+.+
T Consensus 171 ll~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T 250 (361)
T PF07814_consen 171 LLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVT 250 (361)
T ss_pred HHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHH
Confidence 555555531 1 112556677888888888762 10 123467889999877
Q ss_pred C-CchhHHHHHhc--CcHHH-HHHHhcc---CCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHH
Q 005598 597 T-IPDGRVAIGQE--NGIPV-LVEVVEL---GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPP 655 (689)
Q Consensus 597 ~-~~e~r~~i~~~--g~v~~-Lv~lL~s---~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~ 655 (689)
. +.+++..+... +.++. +..++.. ........++.+|.|+..+++..+..+...+....
T Consensus 251 ~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~ 316 (361)
T PF07814_consen 251 FLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQ 316 (361)
T ss_pred hcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccc
Confidence 6 44556655543 23333 3333332 23344678999999999999888777776544333
No 197
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=93.72 E-value=0.068 Score=41.05 Aligned_cols=45 Identities=18% Similarity=0.328 Sum_probs=25.6
Q ss_pred ccccccccccccCcee-cCCCcc--ccHHHHHHHHh-cCCCCCCCCCCc
Q 005598 100 DFCCPLSLELMTDPVI-VASGQT--YERAFIKKWID-LGLFVCPKTRQT 144 (689)
Q Consensus 100 ~f~CpI~~~lm~dPV~-~~~G~t--y~r~~I~~~l~-~~~~~cP~t~~~ 144 (689)
.+.|||+...|+-||- ..|-|. ||-....+... .+.-.||.|+++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 3789999999999997 468876 77755555444 344569999874
No 198
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.68 E-value=0.46 Score=41.84 Aligned_cols=68 Identities=22% Similarity=0.277 Sum_probs=49.4
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHh
Q 005598 528 GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLA 596 (689)
Q Consensus 528 g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa 596 (689)
.++++++..+.+.+.+++..|+.+|+|++..........-..++..|.+++ +++.. +..++.+|.+|-
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~-Vr~~a~~Ld~ll 95 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDEN-VRSAAELLDRLL 95 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh-HHHHHHHHHHHh
Confidence 678999999999999999999999999986443322222367788888888 44444 555556666653
No 199
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.68 E-value=0.57 Score=54.75 Aligned_cols=193 Identities=17% Similarity=0.177 Sum_probs=133.0
Q ss_pred CCccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHH-hcccCchhHHHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHH
Q 005598 476 NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLF-SLSVIEDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALF 553 (689)
Q Consensus 476 ~~~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~-nLs~~~~~k~~I~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~ 553 (689)
....+...+..|+...|+++...+....+..+..+|. .+....+ + ....++.+...+... ...-...++.++.
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~-~----~~~v~~~~~s~~~~d~~~~en~E~L~alt 567 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGE-R----SYEVVKPLDSALHNDEKGLENFEALEALT 567 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCC-c----hhhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence 3444566778899999999999888888888888887 2221111 0 114556665555543 2344557899999
Q ss_pred hhhh-chHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHH-Hh-cCcHHHHHHHhccCCHHHHHHH
Q 005598 554 NLSI-YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAI-GQ-ENGIPVLVEVVELGSARGKENA 629 (689)
Q Consensus 554 nLs~-~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i-~~-~g~v~~Lv~lL~s~s~~~~e~A 629 (689)
||+. +...+++++..-+++.+-.++ +++...+..++..+.||..++.--+.. ++ ...++.....+..........+
T Consensus 568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~ 647 (748)
T KOG4151|consen 568 NLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAG 647 (748)
T ss_pred cccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhc
Confidence 9988 445677888877777766665 677778889999999999988765443 44 3456777777766666667777
Q ss_pred HHHHHHHhhCCHhhHHHHHh-CCChHHHHHhhhcCCHHHHHHHHH
Q 005598 630 AAALLQLCTNSSRFCSMVLQ-EGAVPPLVALSQSGTPRAKEKAQA 673 (689)
Q Consensus 630 v~aL~~L~~~~~~~~~~lv~-~g~i~~L~~LL~~~~~~vr~~A~~ 673 (689)
+.++..+.......+..+.+ ......+..+++++...++.....
T Consensus 648 a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~ 692 (748)
T KOG4151|consen 648 AGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLV 692 (748)
T ss_pred cccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhh
Confidence 77777677776666664333 466777888888887777765444
No 200
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=93.65 E-value=2.4 Score=51.89 Aligned_cols=265 Identities=15% Similarity=0.155 Sum_probs=140.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC----CccH
Q 005598 405 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN----DNNK 480 (689)
Q Consensus 405 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~----~~~k 480 (689)
.+..-++.|+. .+.+.+|+..|..|+.-.. .- ..-..++|.++.++.....+|+..|+.+|..+-.. +..-
T Consensus 426 ~lts~IR~lk~--~~tK~~ALeLl~~lS~~i~-de--~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~d 500 (1431)
T KOG1240|consen 426 VLTSCIRALKT--IQTKLAALELLQELSTYID-DE--VKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSD 500 (1431)
T ss_pred HHHHHHHhhhc--chhHHHHHHHHHHHhhhcc-hH--HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCccc
Confidence 44444555544 3467889999999876321 11 11225799999999999999999999998876321 2222
Q ss_pred HHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHhcccCch----hHHHHHhhC------------------------ChH
Q 005598 481 SAIANANAIEPLIHVLQTG-SPEARENAAATLFSLSVIED----NKIKIGRSG------------------------AIG 531 (689)
Q Consensus 481 ~~i~~~g~l~~Lv~lL~s~-~~~~~~~Aa~aL~nLs~~~~----~k~~I~~~g------------------------~I~ 531 (689)
..|.-.-.+|.|-.++.+. ...+|..-|..|..|+.... ....+...| .+.
T Consensus 501 aniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~ 580 (1431)
T KOG1240|consen 501 ANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVE 580 (1431)
T ss_pred chhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHH
Confidence 3444456777788888773 34455554555544432100 000000001 111
Q ss_pred -HHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhcC
Q 005598 532 -PLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQEN 609 (689)
Q Consensus 532 -~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g 609 (689)
..+.||.+..+-+++.-+..|.-||..-.-.. ...=+++.|+.+| +.+..+.-.-...+.-++..-..| -+++.
T Consensus 581 ~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k--sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r--s~sey 656 (1431)
T KOG1240|consen 581 QMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK--SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR--SVSEY 656 (1431)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc--cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee--eHHHH
Confidence 22333334344455544445555544211000 0011344555555 333222222222222222211111 12345
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 005598 610 GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 680 (689)
Q Consensus 610 ~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~ 680 (689)
.+|.|.+-|..+.+.+...|..+|.-||..+--.+..+++ .++...-+|-..+.-+|+.+..++-...+
T Consensus 657 llPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~--i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 657 LLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKD--ILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred HHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHH--HHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 6788888888889999999999999998876422222222 23344445556777788888876655544
No 201
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.58 E-value=3.9 Score=40.03 Aligned_cols=93 Identities=17% Similarity=0.195 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHH
Q 005598 417 SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVL 496 (689)
Q Consensus 417 ~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL 496 (689)
++.++.+++..+..|+..-+. +++ ..++.+...|.++++.|+..|+.+|..|...+-.| .+...+..++..|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~----~ve-~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik---~k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN----LVE-PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK---VKGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH----HHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee---ehhhhhHHHHHHH
Confidence 467888999999999875432 222 46888999999999999999999999986443221 1112347788888
Q ss_pred cCCCHHHHHHHHHHHHhcccC
Q 005598 497 QTGSPEARENAAATLFSLSVI 517 (689)
Q Consensus 497 ~s~~~~~~~~Aa~aL~nLs~~ 517 (689)
.+.+++++..|...+..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 899999999999999988654
No 202
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.54 E-value=0.037 Score=42.85 Aligned_cols=47 Identities=11% Similarity=0.079 Sum_probs=34.9
Q ss_pred ccccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCC
Q 005598 100 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT 149 (689)
Q Consensus 100 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~ 149 (689)
+..|=.+...=...++++|||..|+.|-.-+ +-+-||+|+.++...+
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCPFCGTPFEFDD 53 (55)
T ss_pred ceeEEEccccccccccccccceeeccccChh---hccCCCCCCCcccCCC
Confidence 3456667777677889999999999884333 3344999999987653
No 203
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=93.51 E-value=0.032 Score=59.47 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=39.8
Q ss_pred ccccccccccCceecCCCccccHHHHHHHHhcC-CCCCCCCCCcCCC
Q 005598 102 CCPLSLELMTDPVIVASGQTYERAFIKKWIDLG-LFVCPKTRQTLAH 147 (689)
Q Consensus 102 ~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~-~~~cP~t~~~l~~ 147 (689)
.|-||-+==+|=-+-||||-.|-.|+..|.... +.+||+||..+.-
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 699999988886677999999999999998654 7889999977654
No 204
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=93.46 E-value=0.35 Score=40.25 Aligned_cols=65 Identities=14% Similarity=0.161 Sum_probs=56.8
Q ss_pred HHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhHHHHHhcC
Q 005598 545 KKDAATALFNLSIYHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQEN 609 (689)
Q Consensus 545 ~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g 609 (689)
.+.|++|+.+++..+.....+-+.++++.++++. .+--.++--|+.+|..++...++.+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 5789999999999888888888889999999998 3556777889999999999999999887765
No 205
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=93.40 E-value=0.93 Score=46.85 Aligned_cols=145 Identities=16% Similarity=0.138 Sum_probs=107.3
Q ss_pred HHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCC-----HHHHHHHHHHHHHhhcC--CccHHHHHHcCCHHHHHH
Q 005598 422 REATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSE-----TKIQENAVTALLNLSIN--DNNKSAIANANAIEPLIH 494 (689)
Q Consensus 422 ~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~-----~~v~~~Al~aL~nLs~~--~~~k~~i~~~g~l~~Lv~ 494 (689)
.+|+..+.-+|. +++.|..|.++...-.|..+|+..+ +.++..++.+++.|... .+....+...+.+|..++
T Consensus 68 cnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr 146 (262)
T PF04078_consen 68 CNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLR 146 (262)
T ss_dssp HHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHH
Confidence 467777778888 6789999999988888888886543 45778888899888754 344556677899999999
Q ss_pred HHcCCCHHHHHHHHHHHHhcccCchhHHHHHh--------hCChHHHHHh-hcCCCHHHHHHHHHHHHhhhhchHHHHHH
Q 005598 495 VLQTGSPEARENAAATLFSLSVIEDNKIKIGR--------SGAIGPLVDL-LGNGTPRGKKDAATALFNLSIYHENKARI 565 (689)
Q Consensus 495 lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~--------~g~I~~Lv~L-L~~~~~~v~~~Al~aL~nLs~~~~n~~~l 565 (689)
.++.|+.-.+..|..++..+-.++..-..++. ..++..+|.- .+..+++..+..+++-..|+.++.++..+
T Consensus 147 ~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL 226 (262)
T PF04078_consen 147 IMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREAL 226 (262)
T ss_dssp HHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHH
Confidence 99999999999999999988777765444432 1344444443 34668999999999999999999888876
Q ss_pred HH
Q 005598 566 VQ 567 (689)
Q Consensus 566 v~ 567 (689)
..
T Consensus 227 ~~ 228 (262)
T PF04078_consen 227 RQ 228 (262)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 206
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.37 E-value=0.68 Score=48.30 Aligned_cols=42 Identities=31% Similarity=0.639 Sum_probs=36.3
Q ss_pred cccccccccccC---ceecCCCccccHHHHHHHHhcCCC--CCCCCC
Q 005598 101 FCCPLSLELMTD---PVIVASGQTYERAFIKKWIDLGLF--VCPKTR 142 (689)
Q Consensus 101 f~CpI~~~lm~d---PV~~~~G~ty~r~~I~~~l~~~~~--~cP~t~ 142 (689)
|+||+..+.-.| ||.+.|||..-+.++.+--++|.. .||.|.
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 899999988776 899999999999999888877643 499994
No 207
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.36 E-value=7 Score=41.59 Aligned_cols=167 Identities=14% Similarity=0.145 Sum_probs=109.9
Q ss_pred hHHHHHH-HHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC--CccH
Q 005598 404 TQVRKLV-EDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN--DNNK 480 (689)
Q Consensus 404 ~~V~~Lv-~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~--~~~k 480 (689)
+.+..|| ..+++.++.++..|+.+|..++--+.+ ... ..++.+...+..++..++..|+.+|..+... ....
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~---~a~--~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKE---LAK--EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH---HHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 5566555 778899999999999999998875532 111 3577788888778899999999999888531 1111
Q ss_pred H-------HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCC----CHHHHHHHH
Q 005598 481 S-------AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG----TPRGKKDAA 549 (689)
Q Consensus 481 ~-------~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~----~~~v~~~Al 549 (689)
. .......++.+...|.+.+++++..|+..++.|-....... ...++..|+-+--++ +...+..-.
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~ 177 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLS 177 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence 1 12234577788889998999999999999988754332211 123444444443222 344444444
Q ss_pred HHHHhhhhchHHHHHHHHhCcHHHHHHhc
Q 005598 550 TALFNLSIYHENKARIVQAGAVKHLVDLM 578 (689)
Q Consensus 550 ~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL 578 (689)
..+-..+..+...+..+....++.+..++
T Consensus 178 ~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~ 206 (298)
T PF12719_consen 178 VFFPVYASSSPENQERLAEAFLPTLRTLS 206 (298)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 45556666666556667777777777766
No 208
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=93.35 E-value=14 Score=40.08 Aligned_cols=197 Identities=12% Similarity=0.067 Sum_probs=140.6
Q ss_pred HHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-CccHH-----HHHHc--CCHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005598 442 IANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKS-----AIANA--NAIEPLIHVLQTGSPEARENAAATLFS 513 (689)
Q Consensus 442 i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~-~~~k~-----~i~~~--g~l~~Lv~lL~s~~~~~~~~Aa~aL~n 513 (689)
+...+.+..|+..|..-+-+.+..++.+..++... ...+. .+... ..+..|+.--. ++++...+...|..
T Consensus 72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlRe 149 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHHH
Confidence 44458899999999888889999999999888643 22222 22211 23333333322 46666777888888
Q ss_pred cccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhh-chHHHHHHHHh---CcHHHHHHhc-CCChHHHHHH
Q 005598 514 LSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARIVQA---GAVKHLVDLM-DPAAGMVDKA 588 (689)
Q Consensus 514 Ls~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~~~n~~~lv~~---G~v~~Lv~LL-~~~~~v~e~A 588 (689)
....+.....|.....+..+.+.+..++-++...|..++..|-. ++.....++.. ..+.....+| +++--+...+
T Consensus 150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 88888777778788888889999999999999999999998665 45555666653 4556666777 4555667899
Q ss_pred HHHHHHHhCCchhHHHHHh----cCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCC
Q 005598 589 VAVLANLATIPDGRVAIGQ----ENGIPVLVEVVELGSARGKENAAAALLQLCTNS 640 (689)
Q Consensus 589 l~~L~nLa~~~e~r~~i~~----~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~ 640 (689)
+.+|+.|-..+.+...+.. ..-+..++.+|++.+..++..|..+.--...+.
T Consensus 230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 9999999998888766653 234888899999999999999999887766654
No 209
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=93.32 E-value=0.85 Score=47.28 Aligned_cols=95 Identities=15% Similarity=0.227 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHhc-cCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhh
Q 005598 584 MVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVE-LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQ 661 (689)
Q Consensus 584 v~e~Al~~L~nLa~-~~e~r~~i~~~g~v~~Lv~lL~-s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~ 661 (689)
....|+.+|.-++- ++..+..+.+...+..|+.+|. ...+.++-.++.+|..+...++.+...+-+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 34567788888776 8889999999999999999995 467899999999999999999999999999999999999999
Q ss_pred cCC--HHHHHHHHHHHHHh
Q 005598 662 SGT--PRAKEKAQALLSYF 678 (689)
Q Consensus 662 ~~~--~~vr~~A~~lL~~L 678 (689)
+.. ..+|-|+.+.|-..
T Consensus 187 ~~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFY 205 (257)
T ss_pred cccccHHHhHHHHHHHHHH
Confidence 874 67888888855443
No 210
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.12 E-value=1.7 Score=52.10 Aligned_cols=253 Identities=15% Similarity=0.201 Sum_probs=151.5
Q ss_pred HHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhh-cCCccHHHHHHcCCHHHHHHHHcCCC----
Q 005598 426 AELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS-INDNNKSAIANANAIEPLIHVLQTGS---- 500 (689)
Q Consensus 426 ~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs-~~~~~k~~i~~~g~l~~Lv~lL~s~~---- 500 (689)
.+|..|.+.+.+|...+.++.++..++.++-+ .+-+...+.++.-|. .++.. +....+-.++..|+++-
T Consensus 664 DcLisllKnnteNqklFreanGvklilpflin--dehRSslLrivscLitvdpkq----vhhqelmalVdtLksgmvt~I 737 (2799)
T KOG1788|consen 664 DCLISLLKNNTENQKLFREANGVKLILPFLIN--DEHRSSLLRIVSCLITVDPKQ----VHHQELMALVDTLKSGMVTRI 737 (2799)
T ss_pred HHHHHHHhccchhhHHHHhhcCceEEEEeeec--hHHHHHHHHHHHHHhccCccc----ccHHHHHHHHHHHHhcceecc
Confidence 46667778888999999999888888888733 233333444444442 22221 11223445666666531
Q ss_pred --------HHHHHHHHHHHHhccc-CchhHHHHHhhCChHHHHHhhcC----------CCHHHHHHHHHHHHhh-----h
Q 005598 501 --------PEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGN----------GTPRGKKDAATALFNL-----S 556 (689)
Q Consensus 501 --------~~~~~~Aa~aL~nLs~-~~~~k~~I~~~g~I~~Lv~LL~~----------~~~~v~~~Al~aL~nL-----s 556 (689)
..+....++++|.+.. +...+..+++.+++..|..+|.. ++.-+...-...|+.+ +
T Consensus 738 sgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavc 817 (2799)
T KOG1788|consen 738 SGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVC 817 (2799)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHh
Confidence 2345566778887754 45567778888888887777641 1222222333333332 3
Q ss_pred hchHHHHHHH-------------HhC---------cHHHHHHhc-C--CChHHH--HHHHHHHHHHhC------Cc----
Q 005598 557 IYHENKARIV-------------QAG---------AVKHLVDLM-D--PAAGMV--DKAVAVLANLAT------IP---- 599 (689)
Q Consensus 557 ~~~~n~~~lv-------------~~G---------~v~~Lv~LL-~--~~~~v~--e~Al~~L~nLa~------~~---- 599 (689)
.++.|+.++. ..| +|..|+++- + ....+. ..|+.-+-.+-. .+
T Consensus 818 enasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGqf 897 (2799)
T KOG1788|consen 818 ENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQF 897 (2799)
T ss_pred hcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCCc
Confidence 3455554332 222 222222220 0 001111 122322222211 12
Q ss_pred -hhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhh---cCCHHHHHHHHHHH
Q 005598 600 -DGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQ---SGTPRAKEKAQALL 675 (689)
Q Consensus 600 -e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~---~~~~~vr~~A~~lL 675 (689)
..++.+...|++..|+..+....++.+..-...|-.+++.++.+.......|.+..|++++. +|+...--.|..++
T Consensus 898 npdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkIv 977 (2799)
T KOG1788|consen 898 NPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIV 977 (2799)
T ss_pred CchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHH
Confidence 23567778899999999999899999999999999999999988888888999999998864 56656666677777
Q ss_pred HHhhcCcCC
Q 005598 676 SYFRNQRHG 684 (689)
Q Consensus 676 ~~L~~~~~~ 684 (689)
.+|..++-.
T Consensus 978 emLgayrls 986 (2799)
T KOG1788|consen 978 EMLGAYRLS 986 (2799)
T ss_pred HHHhhccCC
Confidence 777666543
No 211
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=93.05 E-value=9.1 Score=39.71 Aligned_cols=60 Identities=20% Similarity=0.210 Sum_probs=46.6
Q ss_pred cHHHHHHHhcc--CCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 005598 610 GIPVLVEVVEL--GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 680 (689)
Q Consensus 610 ~v~~Lv~lL~s--~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~ 680 (689)
.|+.|.+.|.. ..+.++..|+.+|..++.. ..++.|.+++....+-+++.+.-.|.++.-
T Consensus 219 ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e-----------~~~~vL~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 219 AIPSLIKVLLDETEHPMVRHEAAEALGAIADE-----------DCVEVLKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH-----------HHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 58888888864 5789999999999987742 346677788888888888888888777653
No 212
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=92.97 E-value=1.6 Score=49.22 Aligned_cols=153 Identities=19% Similarity=0.148 Sum_probs=112.1
Q ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCH----HHHHHHHHHHHhhhhchHHHH
Q 005598 488 AIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTP----RGKKDAATALFNLSIYHENKA 563 (689)
Q Consensus 488 ~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~----~v~~~Al~aL~nLs~~~~n~~ 563 (689)
....+.+++.+++...+..|...|.+++.+......+....++..|..++.++.. .....++.++..|-...-..+
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 3455677888898888888999999999998888888888899999999998743 455555666555544333333
Q ss_pred HHHHhCcHHHHHHhc---CCChHHHHHHHHHHHHHhCCch-hHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhC
Q 005598 564 RIVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLATIPD-GRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 639 (689)
Q Consensus 564 ~lv~~G~v~~Lv~LL---~~~~~v~e~Al~~L~nLa~~~e-~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~ 639 (689)
..+....|.....+. ..+..+...|+..|.++..+.. -++.+.++--+..|+..|+..+..++..|...|-.+...
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~ 243 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK 243 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence 344444454554444 2344567789999999988666 466667777799999999999999999888888777655
Q ss_pred C
Q 005598 640 S 640 (689)
Q Consensus 640 ~ 640 (689)
.
T Consensus 244 a 244 (713)
T KOG2999|consen 244 A 244 (713)
T ss_pred C
Confidence 4
No 213
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=92.92 E-value=2.9 Score=44.52 Aligned_cols=168 Identities=16% Similarity=0.199 Sum_probs=109.6
Q ss_pred CcHHHHH-HhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhH--H
Q 005598 446 GAINILV-DMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK--I 522 (689)
Q Consensus 446 g~I~~Lv-~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k--~ 522 (689)
+.+..|+ ..+++.++.+++.|+.+|+-.+.-+.. .....++.+...++.++..++..|+.+|+.+....... .
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~----~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKE----LAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 3444443 677888999999999999988754331 11234677888887788999999999999886522111 1
Q ss_pred -------HHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHh-cCC---ChHHHHHHH-H
Q 005598 523 -------KIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDL-MDP---AAGMVDKAV-A 590 (689)
Q Consensus 523 -------~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~L-L~~---~~~v~e~Al-~ 590 (689)
.......++.+.+.|.+.++.++..|+..++.|...+.... ...++..|+-+ +++ +..-...++ .
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~ 178 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSV 178 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHH
Confidence 12223677888888888899999999999998876543322 13344444443 232 222233444 4
Q ss_pred HHHHHhCCchhHHHHHhcCcHHHHHHHhcc
Q 005598 591 VLANLATIPDGRVAIGQENGIPVLVEVVEL 620 (689)
Q Consensus 591 ~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s 620 (689)
.+-..|......+..+...+++.+..+...
T Consensus 179 Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 179 FFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 455566666656667777778888777754
No 214
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.86 E-value=4.9 Score=49.24 Aligned_cols=218 Identities=18% Similarity=0.224 Sum_probs=125.3
Q ss_pred CCCHHHHHHHHHHHHHhhccCcccHHHHHhc--CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC--CccHHHHHHcCCHH
Q 005598 415 STSLDTQREATAELRLLAKHNMDNRMVIANC--GAINILVDMLHSSETKIQENAVTALLNLSIN--DNNKSAIANANAIE 490 (689)
Q Consensus 415 s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~--g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~--~~~k~~i~~~g~l~ 490 (689)
+.+..+|..+-+.|..+... +.......+. .....|..-+++.....+...+.+|..|-.. .+....+. ..|+
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~--k~I~ 741 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP--KLIP 741 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH--HHHH
Confidence 44778899999999888775 3333333221 3344455555555666677777777666422 12222222 2345
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhccc----CchhHHHHHhhCChHHHHHhhcCC--CHHHHHHH--HHHHHhhhhchHHH
Q 005598 491 PLIHVLQTGSPEARENAAATLFSLSV----IEDNKIKIGRSGAIGPLVDLLGNG--TPRGKKDA--ATALFNLSIYHENK 562 (689)
Q Consensus 491 ~Lv~lL~s~~~~~~~~Aa~aL~nLs~----~~~~k~~I~~~g~I~~Lv~LL~~~--~~~v~~~A--l~aL~nLs~~~~n~ 562 (689)
-++-.++.-+...+.+|..+|..|.. .+..... ....|...+..+..+ .......+ +.++..+.. ..
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~---e~ 816 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ---EF 816 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH---HH
Confidence 55555577788899999999988862 1111000 112455555555544 22222222 334444332 22
Q ss_pred HHHHHhCcHHHHHHh----c-CCChHHHHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHH
Q 005598 563 ARIVQAGAVKHLVDL----M-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQL 636 (689)
Q Consensus 563 ~~lv~~G~v~~Lv~L----L-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L 636 (689)
..+.+.+.++.+++. | .....++..|++.+..++. .++..-.--....++.++.+++.....++...-..|-.|
T Consensus 817 ~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekL 896 (1176)
T KOG1248|consen 817 KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKL 896 (1176)
T ss_pred hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 334445555555554 3 5778899999999999887 444433333344678888887777777777766677666
Q ss_pred hhCC
Q 005598 637 CTNS 640 (689)
Q Consensus 637 ~~~~ 640 (689)
++..
T Consensus 897 irkf 900 (1176)
T KOG1248|consen 897 IRKF 900 (1176)
T ss_pred HHHh
Confidence 6643
No 215
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=92.80 E-value=2.1 Score=50.83 Aligned_cols=217 Identities=15% Similarity=0.105 Sum_probs=139.1
Q ss_pred CCCHHHHHHHHHHHHHhhcC-CccHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHhcccCchhHHHHH--hhCChHH
Q 005598 457 SSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLIHVLQ-TGSPEARENAAATLFSLSVIEDNKIKIG--RSGAIGP 532 (689)
Q Consensus 457 s~~~~v~~~Al~aL~nLs~~-~~~k~~i~~~g~l~~Lv~lL~-s~~~~~~~~Aa~aL~nLs~~~~~k~~I~--~~g~I~~ 532 (689)
+..+.+.-.+.+++...+.. ..+...+- -.+...+..+. +..+.++..|+++++..+. ...+. ..+++..
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~----~~vl~~~~p~ild~ 534 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCK----VKVLLSLQPMILDG 534 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccC----ceeccccchHHHHH
Confidence 34455555777777655422 11211111 12233333333 3345677788887777662 11111 2378888
Q ss_pred HHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc---CCChHHHHHHHHHHHHHhCCchhHHHHHhcC
Q 005598 533 LVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLATIPDGRVAIGQEN 609 (689)
Q Consensus 533 Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL---~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g 609 (689)
|+++....+.++......+|...+..+.-.....++-+.|.++.++ .+++-++..+-.++..|+....+..- ....
T Consensus 535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~-m~e~ 613 (1005)
T KOG2274|consen 535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGP-MQER 613 (1005)
T ss_pred HHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcc-hHHH
Confidence 9999888888888888889999988887777778888889888876 45555666777777766652222211 1234
Q ss_pred cHHHHHHHhccCC----HHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHh-hhcCCHHHHHHHHHHHHHhhc
Q 005598 610 GIPVLVEVVELGS----ARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVAL-SQSGTPRAKEKAQALLSYFRN 680 (689)
Q Consensus 610 ~v~~Lv~lL~s~s----~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~L-L~~~~~~vr~~A~~lL~~L~~ 680 (689)
.+|.|+..|.... .....-|+.+|..+.++.+.-....+-.-++|.+.++ +.+++..+-..|.++|+.+-.
T Consensus 614 ~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 614 LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 6899999997654 5667778888888888765322222233467777776 556667888999999998754
No 216
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.58 E-value=0.037 Score=42.42 Aligned_cols=45 Identities=20% Similarity=0.194 Sum_probs=37.8
Q ss_pred cccccccccccCceecCCCcc-ccHHHHHHHHhcCCCCCCCCCCcC
Q 005598 101 FCCPLSLELMTDPVIVASGQT-YERAFIKKWIDLGLFVCPKTRQTL 145 (689)
Q Consensus 101 f~CpI~~~lm~dPV~~~~G~t-y~r~~I~~~l~~~~~~cP~t~~~l 145 (689)
-.|-||.+-..|-|+--|||- .|-.|=.+-|...+..||.||.|+
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 359999998888888899997 788887777776778899999875
No 217
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=92.32 E-value=3.9 Score=45.14 Aligned_cols=96 Identities=9% Similarity=0.232 Sum_probs=77.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhc-C---CCHHHHHHHHHHHHHhhcCCccH
Q 005598 405 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH-S---SETKIQENAVTALLNLSINDNNK 480 (689)
Q Consensus 405 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~-s---~~~~v~~~Al~aL~nLs~~~~~k 480 (689)
.+..+++.-..--+.+-..|+..+..+....|..-..+.+.|.++.++..+. . ...++....-.+|..||.+....
T Consensus 110 sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl 189 (379)
T PF06025_consen 110 SLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGL 189 (379)
T ss_pred HHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHH
Confidence 3344444444444567788999999999988989999999999999999887 4 35677777778888899999999
Q ss_pred HHHHHcCCHHHHHHHHcCCC
Q 005598 481 SAIANANAIEPLIHVLQTGS 500 (689)
Q Consensus 481 ~~i~~~g~l~~Lv~lL~s~~ 500 (689)
+.+.+.+.++.+++++.+..
T Consensus 190 ~~~~~~~~l~~~f~if~s~~ 209 (379)
T PF06025_consen 190 EKVKSSNPLDKLFEIFTSPD 209 (379)
T ss_pred HHHHhcChHHHHHHHhCCHH
Confidence 99999999999999987653
No 218
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.16 E-value=0.3 Score=44.50 Aligned_cols=70 Identities=10% Similarity=0.107 Sum_probs=59.1
Q ss_pred cHHHHHHHhc-cCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 005598 610 GIPVLVEVVE-LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 679 (689)
Q Consensus 610 ~v~~Lv~lL~-s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~ 679 (689)
.+..|+++|. +.++.+...|+.=|..+++..|..+..+-+.|+-..++.||.+.++.+|..|..++..|-
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 5789999994 457788888999999999999988888888999999999999999999999999877653
No 219
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.89 E-value=0.11 Score=55.43 Aligned_cols=53 Identities=26% Similarity=0.370 Sum_probs=48.2
Q ss_pred ccccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCCcc
Q 005598 100 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 153 (689)
Q Consensus 100 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~pn 153 (689)
...|.+++..|.|||-+..|..||-..|--||+.. .+-|.||+++..++|++-
T Consensus 40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk~-g~nP~tG~kl~~~dLIkL 92 (518)
T KOG0883|consen 40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKKH-GTNPITGQKLDGKDLIKL 92 (518)
T ss_pred hhhceeccccccCcccccCCcEEeeehhhHHHHHc-CCCCCCCCccccccceee
Confidence 46899999999999999999999999999999975 568999999999998873
No 220
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=91.87 E-value=2.2 Score=41.61 Aligned_cols=76 Identities=13% Similarity=0.267 Sum_probs=62.4
Q ss_pred HHHHHHhCcHHHHHHhcC----------CChHHHHHHHHHHHHHhCCchhHHHHHh-cCcHHHHHHHhccCCHHHHHHHH
Q 005598 562 KARIVQAGAVKHLVDLMD----------PAAGMVDKAVAVLANLATIPDGRVAIGQ-ENGIPVLVEVVELGSARGKENAA 630 (689)
Q Consensus 562 ~~~lv~~G~v~~Lv~LL~----------~~~~v~e~Al~~L~nLa~~~e~r~~i~~-~g~v~~Lv~lL~s~s~~~~e~Av 630 (689)
...|++.||+..|+++|. .+......++.+|..|..+..|...++. .+++..|+..|.+.+..++..|+
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~l 179 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLAL 179 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHH
Confidence 457889999999999871 2235667899999999999999988886 56799999999999999999999
Q ss_pred HHHHHHh
Q 005598 631 AALLQLC 637 (689)
Q Consensus 631 ~aL~~L~ 637 (689)
.+|..+|
T Consensus 180 eiL~~lc 186 (187)
T PF06371_consen 180 EILAALC 186 (187)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999988
No 221
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.61 E-value=26 Score=41.50 Aligned_cols=249 Identities=13% Similarity=0.113 Sum_probs=129.4
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHH
Q 005598 411 EDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIE 490 (689)
Q Consensus 411 ~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~ 490 (689)
+...+..+.++..|+.+|-+|-.-+++.+..+ +..+-.||....+.|.-.|+.+...+|-+ .-+.| .+...
T Consensus 150 ~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL-----~e~I~~LLaD~splVvgsAv~AF~evCPe--rldLI--Hknyr 220 (968)
T KOG1060|consen 150 KAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL-----EEVIKKLLADRSPLVVGSAVMAFEEVCPE--RLDLI--HKNYR 220 (968)
T ss_pred HHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH-----HHHHHHHhcCCCCcchhHHHHHHHHhchh--HHHHh--hHHHH
Confidence 33446788889999999988877776665544 44555677777788888888888777632 11111 12233
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhccc----Cc--------h-------------hHHHHHhhC----ChHHHHHhhcCCC
Q 005598 491 PLIHVLQTGSPEARENAAATLFSLSV----IE--------D-------------NKIKIGRSG----AIGPLVDLLGNGT 541 (689)
Q Consensus 491 ~Lv~lL~s~~~~~~~~Aa~aL~nLs~----~~--------~-------------~k~~I~~~g----~I~~Lv~LL~~~~ 541 (689)
.|+.+|.+=+.=-+......|..-+. .+ + .+..+...- .+...-.||.+.+
T Consensus 221 klC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n 300 (968)
T KOG1060|consen 221 KLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRN 300 (968)
T ss_pred HHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCC
Confidence 34444432111111122222211111 00 0 000011111 1222333456778
Q ss_pred HHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhcCCChHHHHHHHHHHHHHhC------------------Cchh--
Q 005598 542 PRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLAT------------------IPDG-- 601 (689)
Q Consensus 542 ~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL~~~~~v~e~Al~~L~nLa~------------------~~e~-- 601 (689)
+.+..+++.+.+.|+-..++ ..++..|+.+|.+...++.-.+..++.++. .+..
T Consensus 301 ~sVVmA~aql~y~lAP~~~~------~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk 374 (968)
T KOG1060|consen 301 PSVVMAVAQLFYHLAPKNQV------TKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVK 374 (968)
T ss_pred cHHHHHHHhHHHhhCCHHHH------HHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHH
Confidence 89999999999998764322 224667777774443333333333332221 1110
Q ss_pred --H----HHHHhcCcHHHH----HHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHH
Q 005598 602 --R----VAIGQENGIPVL----VEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKA 671 (689)
Q Consensus 602 --r----~~i~~~g~v~~L----v~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A 671 (689)
+ ..++.+.-+..+ ...+.+.+......|+.+|..++..... +...++..|+.++.+.+..+.-.|
T Consensus 375 ~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s-----v~~tCL~gLv~Llsshde~Vv~ea 449 (968)
T KOG1060|consen 375 ILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS-----VTDTCLNGLVQLLSSHDELVVAEA 449 (968)
T ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc-----hhhHHHHHHHHHHhcccchhHHHH
Confidence 0 111223333333 3334455555666777777776654332 234567778888888877666666
Q ss_pred HHHHHHhh
Q 005598 672 QALLSYFR 679 (689)
Q Consensus 672 ~~lL~~L~ 679 (689)
...++.|-
T Consensus 450 V~vIk~Ll 457 (968)
T KOG1060|consen 450 VVVIKRLL 457 (968)
T ss_pred HHHHHHHH
Confidence 66555554
No 222
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.60 E-value=0.042 Score=55.84 Aligned_cols=55 Identities=18% Similarity=0.421 Sum_probs=43.5
Q ss_pred CccccccccccccCce----------ecCCCccccHHHHHHHHhcC-CCCCCCCCCcCCCCCCCcc
Q 005598 99 SDFCCPLSLELMTDPV----------IVASGQTYERAFIKKWIDLG-LFVCPKTRQTLAHTTLIPN 153 (689)
Q Consensus 99 ~~f~CpI~~~lm~dPV----------~~~~G~ty~r~~I~~~l~~~-~~~cP~t~~~l~~~~l~pn 153 (689)
++=.|.||++-+.+-| .++|+|+|--.||.-|..-| ..+||.|++.+..+.+..|
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn 288 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN 288 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence 3568999998776666 58999999999999997654 4689999988766555544
No 223
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=91.59 E-value=0.047 Score=62.67 Aligned_cols=47 Identities=17% Similarity=0.389 Sum_probs=40.0
Q ss_pred ccccccccccccCcee---cCCCccccHHHHHHHHhcCCCCCCCCCCcCCC
Q 005598 100 DFCCPLSLELMTDPVI---VASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 147 (689)
Q Consensus 100 ~f~CpI~~~lm~dPV~---~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~ 147 (689)
.-.||+|..-+.|-.+ .+|||-||.+||..|-... .+||+|+..+..
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a-qTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA-QTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc-ccCchhhhhhhe
Confidence 4579999999999876 4799999999999998864 789999987754
No 224
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=91.47 E-value=5.7 Score=48.78 Aligned_cols=228 Identities=15% Similarity=0.161 Sum_probs=130.2
Q ss_pred chhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhc---c-CcccHHHHHhcCcHHHHHHhhcCCC-HHHHHHHHHHHHHhhc
Q 005598 401 GIETQVRKLVEDLKSTSLDTQREATAELRLLAK---H-NMDNRMVIANCGAINILVDMLHSSE-TKIQENAVTALLNLSI 475 (689)
Q Consensus 401 ~~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~---~-s~~nr~~i~~~g~I~~Lv~lL~s~~-~~v~~~Al~aL~nLs~ 475 (689)
..+-.++.++.++.++...+|..|+..|..+.. . .+.+-..+.+ =.+|.|-.++...+ ..++..-+..|..|+.
T Consensus 459 ~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~e-YlfP~L~~l~~d~~~~~vRiayAsnla~LA~ 537 (1431)
T KOG1240|consen 459 KLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPE-YLFPHLNHLLNDSSAQIVRIAYASNLAQLAK 537 (1431)
T ss_pred HHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHh-hhhhhhHhhhccCccceehhhHHhhHHHHHH
Confidence 345678999999999999999999988776532 1 2222223332 34566666665522 2223222222333321
Q ss_pred ------------------C-CccHHHHHH-----c----CCHH-HHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHh
Q 005598 476 ------------------N-DNNKSAIAN-----A----NAIE-PLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGR 526 (689)
Q Consensus 476 ------------------~-~~~k~~i~~-----~----g~l~-~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~ 526 (689)
+ +++...... . ..+. ....+|....+-++..-+..|.-|+. -++.
T Consensus 538 tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~------FFGk 611 (1431)
T KOG1240|consen 538 TAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCV------FFGK 611 (1431)
T ss_pred HHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH------Hhhh
Confidence 1 111000000 0 1122 22334444445555555555554432 2222
Q ss_pred h----CChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchh
Q 005598 527 S----GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDG 601 (689)
Q Consensus 527 ~----g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~ 601 (689)
. -.++.|+.+|.+.+...+-+=...|..++..-.- +-++...+|.|.+-| +.+..++..|+++|..|+...--
T Consensus 612 ~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~--rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll 689 (1431)
T KOG1240|consen 612 EKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW--RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLL 689 (1431)
T ss_pred cccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee--eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhccc
Confidence 1 3567788888888776666544455544443222 225678888888888 77888999999999999874432
Q ss_pred H-HHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhC
Q 005598 602 R-VAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 639 (689)
Q Consensus 602 r-~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~ 639 (689)
+ .++. ..++...-+|-..+.-++..++.+|..+...
T Consensus 690 ~K~~v~--~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 690 RKPAVK--DILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred chHHHH--HHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 2 2221 2344455566778999999999999887654
No 225
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.36 E-value=0.045 Score=64.23 Aligned_cols=48 Identities=21% Similarity=0.365 Sum_probs=40.9
Q ss_pred cccccccccccCceecCCCccccHHHHHHHHhcCC-CCCCCCCCcCCCCC
Q 005598 101 FCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGL-FVCPKTRQTLAHTT 149 (689)
Q Consensus 101 f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~-~~cP~t~~~l~~~~ 149 (689)
+.|+||.+ ..+||++.|||.||+.|+...+.... ..||.|+..+....
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 89999999 88999999999999999999987543 35999987766543
No 226
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=91.25 E-value=3.2 Score=43.22 Aligned_cols=183 Identities=17% Similarity=0.181 Sum_probs=113.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcC--CHHHHHHHHcC----CCHHHHHHHHHHHHhcccCchhH
Q 005598 448 INILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANAN--AIEPLIHVLQT----GSPEARENAAATLFSLSVIEDNK 521 (689)
Q Consensus 448 I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g--~l~~Lv~lL~s----~~~~~~~~Aa~aL~nLs~~~~~k 521 (689)
+..+..++.+...+-+.-++-++.-+..++..-..+...+ ....+..++.. ..+..+..+++++.|+-.....+
T Consensus 65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~ 144 (268)
T PF08324_consen 65 LILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR 144 (268)
T ss_dssp HHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH
Confidence 4445555555444445666777766666665555554432 23444444433 45778889999999999888888
Q ss_pred HHHHhh-C-ChHHHHHhhcCC----CHHHHHHHHHHHHhhhhchH-HH-HHHHHhCcHHHHHHhc---CCChHHHHHHHH
Q 005598 522 IKIGRS-G-AIGPLVDLLGNG----TPRGKKDAATALFNLSIYHE-NK-ARIVQAGAVKHLVDLM---DPAAGMVDKAVA 590 (689)
Q Consensus 522 ~~I~~~-g-~I~~Lv~LL~~~----~~~v~~~Al~aL~nLs~~~~-n~-~~lv~~G~v~~Lv~LL---~~~~~v~e~Al~ 590 (689)
..+... + .+-.++..+... +..++..++.+++|++..-. .+ ..-.....+..+++.+ ..+.+..-+++-
T Consensus 145 ~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~Lv 224 (268)
T PF08324_consen 145 QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLV 224 (268)
T ss_dssp HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 877665 4 455555555544 67888899999999987322 11 1112233556666644 257888899999
Q ss_pred HHHHHhCCchhHHHHHhc-CcHHHHHHHh-ccCCHHHHHHHH
Q 005598 591 VLANLATIPDGRVAIGQE-NGIPVLVEVV-ELGSARGKENAA 630 (689)
Q Consensus 591 ~L~nLa~~~e~r~~i~~~-g~v~~Lv~lL-~s~s~~~~e~Av 630 (689)
+|++|...+......... ++-..+...- ....+++++.+.
T Consensus 225 AlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ 266 (268)
T PF08324_consen 225 ALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAA 266 (268)
T ss_dssp HHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhc
Confidence 999999877666666553 3333333333 345667666554
No 227
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.21 E-value=9.1 Score=44.94 Aligned_cols=133 Identities=18% Similarity=0.256 Sum_probs=75.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhc-----------CCCHHHHHHHHHHHHhhhh-c
Q 005598 491 PLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG-----------NGTPRGKKDAATALFNLSI-Y 558 (689)
Q Consensus 491 ~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~-----------~~~~~v~~~Al~aL~nLs~-~ 558 (689)
-++++|.+++.+++..+......|+. ..-+..++.+|+ +.+...+..-+.+|...+. .
T Consensus 321 DvLrvLss~dldvr~Ktldi~ldLvs----------srNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~F 390 (948)
T KOG1058|consen 321 DVLRVLSSPDLDVRSKTLDIALDLVS----------SRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKF 390 (948)
T ss_pred HHHHHcCcccccHHHHHHHHHHhhhh----------hccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcC
Confidence 34455666666666666666665543 233455555554 1134456666667776665 2
Q ss_pred hHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHhcc-CCHHHHHHHHHHHHH
Q 005598 559 HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAALLQ 635 (689)
Q Consensus 559 ~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~v~~Lv~lL~s-~s~~~~e~Av~aL~~ 635 (689)
++ +.+.+|+.|++++ +.+.......+..+..... .+.-|. ..+..|++-+.. .+.++-+.|+|++..
T Consensus 391 p~-----~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~-----~ii~~l~~~~~~irS~ki~rgalwi~Ge 460 (948)
T KOG1058|consen 391 PE-----VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRA-----SIIEKLLETFPQIRSSKICRGALWILGE 460 (948)
T ss_pred hH-----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHH-----HHHHHHHHhhhhhcccccchhHHHHHHH
Confidence 33 5577899999999 4443333333333332221 222232 234555555533 467788889999988
Q ss_pred HhhCCHhh
Q 005598 636 LCTNSSRF 643 (689)
Q Consensus 636 L~~~~~~~ 643 (689)
-|....+.
T Consensus 461 Yce~~~~i 468 (948)
T KOG1058|consen 461 YCEGLSEI 468 (948)
T ss_pred HHhhhHHH
Confidence 88776543
No 228
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=91.12 E-value=0.25 Score=37.74 Aligned_cols=41 Identities=15% Similarity=0.414 Sum_probs=32.0
Q ss_pred ccccccc--cccCceecCCC-----ccccHHHHHHHHhcC-CCCCCCCC
Q 005598 102 CCPLSLE--LMTDPVIVASG-----QTYERAFIKKWIDLG-LFVCPKTR 142 (689)
Q Consensus 102 ~CpI~~~--lm~dPV~~~~G-----~ty~r~~I~~~l~~~-~~~cP~t~ 142 (689)
.|-||++ --.+|.+.||. +-+=+.|+.+|+... ..+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3778875 55778888875 668899999999765 45699985
No 229
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.07 E-value=6.6 Score=46.67 Aligned_cols=215 Identities=14% Similarity=0.135 Sum_probs=127.8
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChH
Q 005598 452 VDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIG 531 (689)
Q Consensus 452 v~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~ 531 (689)
+..+..+-+.++-.++..|..+....+.+..+...+.+...+..|++.+.-+-.+|...+..|+.. .....++
T Consensus 733 i~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~ 805 (982)
T KOG4653|consen 733 ISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILP 805 (982)
T ss_pred HHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHH
Confidence 334444556678888888888876666666777788999999999999888888888877777642 2345666
Q ss_pred HHHH-hhcCC---CHHHHHHHHHHHHhhhhc-hHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhH-HH
Q 005598 532 PLVD-LLGNG---TPRGKKDAATALFNLSIY-HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGR-VA 604 (689)
Q Consensus 532 ~Lv~-LL~~~---~~~v~~~Al~aL~nLs~~-~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r-~~ 604 (689)
-|.+ +.... .++.+...-.++.++... .+...... +-.+...+..+ +++...+..+++.|++||.--..+ ..
T Consensus 806 dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd 884 (982)
T KOG4653|consen 806 DLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD 884 (982)
T ss_pred HHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH
Confidence 6666 33322 133444444666665542 22222222 24445555555 455566778899999988733221 11
Q ss_pred HHhcCcHHHHHHHhc-cCCHHHHHHHHHHHHHHhhCCHhhHHHHHhC---CChHHHHHhhhcCC-HHHHHHHHHHH
Q 005598 605 IGQENGIPVLVEVVE-LGSARGKENAAAALLQLCTNSSRFCSMVLQE---GAVPPLVALSQSGT-PRAKEKAQALL 675 (689)
Q Consensus 605 i~~~g~v~~Lv~lL~-s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~---g~i~~L~~LL~~~~-~~vr~~A~~lL 675 (689)
. =..++..++.+.+ .++..+++.|+-+|..+-.+.....-.+.++ .....+..+..... +.++-.|..+|
T Consensus 885 ~-~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~l 959 (982)
T KOG4653|consen 885 F-FHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCL 959 (982)
T ss_pred H-HHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 1 1123445555554 4688899999999988877655333333322 23344444544443 44554544433
No 230
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=91.04 E-value=0.17 Score=38.29 Aligned_cols=43 Identities=26% Similarity=0.320 Sum_probs=22.2
Q ss_pred cccccccc--cCceec--CCCccccHHHHHHHHhcCCCCCCCCCCcC
Q 005598 103 CPLSLELM--TDPVIV--ASGQTYERAFIKKWIDLGLFVCPKTRQTL 145 (689)
Q Consensus 103 CpI~~~lm--~dPV~~--~~G~ty~r~~I~~~l~~~~~~cP~t~~~l 145 (689)
||+|.+.| +|=-.. +||+-+||.|..+-...++..||-||+++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78888887 221223 58999999998888876667799999875
No 231
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.98 E-value=0.13 Score=54.86 Aligned_cols=50 Identities=16% Similarity=0.384 Sum_probs=37.7
Q ss_pred CCccccccccccccCcee-----c-CCCccccHHHHHHHHhcCCC--CCCCCCCcCCCCC
Q 005598 98 PSDFCCPLSLELMTDPVI-----V-ASGQTYERAFIKKWIDLGLF--VCPKTRQTLAHTT 149 (689)
Q Consensus 98 p~~f~CpI~~~lm~dPV~-----~-~~G~ty~r~~I~~~l~~~~~--~cP~t~~~l~~~~ 149 (689)
|-.-.|.||-+.+ |+. + .|||+|.-.|+.+||...+. +||.|+-.+....
T Consensus 2 pi~A~C~Ic~d~~--p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~ 59 (465)
T KOG0827|consen 2 PIMAECHICIDGR--PNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERH 59 (465)
T ss_pred CccceeeEeccCC--ccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccccee
Confidence 4456799996655 443 3 49999999999999997655 6999985555443
No 232
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=90.74 E-value=0.18 Score=52.23 Aligned_cols=47 Identities=19% Similarity=0.415 Sum_probs=38.4
Q ss_pred cccccc-ccccCcee----cCCCccccHHHHHHHHhcCCCCCCCCCCcCCCC
Q 005598 102 CCPLSL-ELMTDPVI----VASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT 148 (689)
Q Consensus 102 ~CpI~~-~lm~dPV~----~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~ 148 (689)
.||+|. +....|-+ -+|||+.|-+|.-+-+..|...||.|+..|...
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 388887 55566643 289999999999999999988899999987653
No 233
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=90.66 E-value=36 Score=41.18 Aligned_cols=230 Identities=19% Similarity=0.234 Sum_probs=125.1
Q ss_pred hHHHHHHHHhcC-----CCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhc----CCC----HHHHHHHHHHH
Q 005598 404 TQVRKLVEDLKS-----TSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH----SSE----TKIQENAVTAL 470 (689)
Q Consensus 404 ~~V~~Lv~~L~s-----~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~----s~~----~~v~~~Al~aL 470 (689)
+.+..|+..|.+ +..+.....+..|...++ -..||..+.+.|+++.|+..|. ... ..+.+..+.++
T Consensus 117 gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~Ii 195 (802)
T PF13764_consen 117 GGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEII 195 (802)
T ss_pred CCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHH
Confidence 455666666653 222333344555555566 4789999999999999998774 333 56677777776
Q ss_pred HHhhcCCccHHH-----HHH--------cCCHHHHHHHHcCC----CHHHHHHHHHHHHhcccCchhHH-HHHhhCChHH
Q 005598 471 LNLSINDNNKSA-----IAN--------ANAIEPLIHVLQTG----SPEARENAAATLFSLSVIEDNKI-KIGRSGAIGP 532 (689)
Q Consensus 471 ~nLs~~~~~k~~-----i~~--------~g~l~~Lv~lL~s~----~~~~~~~Aa~aL~nLs~~~~~k~-~I~~~g~I~~ 532 (689)
..|......... ... ...+..|+..+.+. +..+....+++|-.|+..+..+. .+++. +.+
T Consensus 196 E~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F~p 273 (802)
T PF13764_consen 196 ESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--FKP 273 (802)
T ss_pred HHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--HHH
Confidence 666422111000 001 12366666666643 57788889999999987544332 22221 122
Q ss_pred HHHhhc--CC-CHHHHHHHHHHHHhhhh----c---hHHHHHHHHhCcHHHHHHhc-C--C------Ch--------HHH
Q 005598 533 LVDLLG--NG-TPRGKKDAATALFNLSI----Y---HENKARIVQAGAVKHLVDLM-D--P------AA--------GMV 585 (689)
Q Consensus 533 Lv~LL~--~~-~~~v~~~Al~aL~nLs~----~---~~n~~~lv~~G~v~~Lv~LL-~--~------~~--------~v~ 585 (689)
.+++=+ .. ...- ...+.+++.++. + ..-|..+++.|++...++.| . + .. +..
T Consensus 274 ~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psL 352 (802)
T PF13764_consen 274 YLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSL 352 (802)
T ss_pred hcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcH
Confidence 222111 11 1111 122344444433 1 23467889999999888876 1 1 11 123
Q ss_pred HHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccC--CHHHHHHHHHHHHHHhh
Q 005598 586 DKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG--SARGKENAAAALLQLCT 638 (689)
Q Consensus 586 e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~--s~~~~e~Av~aL~~L~~ 638 (689)
..++.+|.-||......+.++..++++ ++..|... ...+-..|=.+|-.|+.
T Consensus 353 p~iL~lL~GLa~gh~~tQ~~~~~~~l~-~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 353 PYILRLLRGLARGHEPTQLLIAEQLLP-LLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHhhHHH-HHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 457788888888655555556566664 44444332 23333344444444444
No 234
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=90.64 E-value=6.4 Score=43.88 Aligned_cols=146 Identities=20% Similarity=0.146 Sum_probs=98.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcccCch----hHHHHHhhCChHHHHHhhcCC-----C-H-HHHHHHHHHHHhhhhch
Q 005598 491 PLIHVLQTGSPEARENAAATLFSLSVIED----NKIKIGRSGAIGPLVDLLGNG-----T-P-RGKKDAATALFNLSIYH 559 (689)
Q Consensus 491 ~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~----~k~~I~~~g~I~~Lv~LL~~~-----~-~-~v~~~Al~aL~nLs~~~ 559 (689)
.+..+++..+++-+-.|+-.+..+...++ +|..+.+.=+++.+-++|.++ . + -.+..++..|...|..+
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 35566666666667777777777766444 577788886678888888743 1 2 23445677888888877
Q ss_pred HHHHHHHHhCcHHHHHHhc----CCC----hHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCC-HHHHHHHH
Q 005598 560 ENKARIVQAGAVKHLVDLM----DPA----AGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGS-ARGKENAA 630 (689)
Q Consensus 560 ~n~~~lv~~G~v~~Lv~LL----~~~----~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s-~~~~e~Av 630 (689)
+....----..+|.|++++ +++ ..+++.+-.+|..++..+.|...++..|+++.+.++-...+ ......|.
T Consensus 95 ElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal 174 (698)
T KOG2611|consen 95 ELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALAL 174 (698)
T ss_pred hhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHH
Confidence 7543211234688888888 222 23788999999999999999999999999999987754322 23334444
Q ss_pred HHHHHH
Q 005598 631 AALLQL 636 (689)
Q Consensus 631 ~aL~~L 636 (689)
.++.-+
T Consensus 175 ~Vlll~ 180 (698)
T KOG2611|consen 175 KVLLLL 180 (698)
T ss_pred HHHHHH
Confidence 444443
No 235
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=90.62 E-value=19 Score=43.01 Aligned_cols=170 Identities=12% Similarity=0.097 Sum_probs=112.6
Q ss_pred HHHhccc-CchhHHHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHHhhhhchHHHHHHHHhCcH--HHHHHhc-CCCh-H
Q 005598 510 TLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHENKARIVQAGAV--KHLVDLM-DPAA-G 583 (689)
Q Consensus 510 aL~nLs~-~~~~k~~I~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v--~~Lv~LL-~~~~-~ 583 (689)
+|+++.. .+++...+.+.|++..+...++.. .......+++.+.|++...+.+....-..-+ ..+-.++ ..+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 5666655 566778888999999999999865 5788899999999998866544332211111 1222233 2223 5
Q ss_pred HHHHHHHHHHHHhCCch------hHH----HHHh--------------cCcHHH-HHHHhc-cCCHHHHHHHHHHHHHHh
Q 005598 584 MVDKAVAVLANLATIPD------GRV----AIGQ--------------ENGIPV-LVEVVE-LGSARGKENAAAALLQLC 637 (689)
Q Consensus 584 v~e~Al~~L~nLa~~~e------~r~----~i~~--------------~g~v~~-Lv~lL~-s~s~~~~e~Av~aL~~L~ 637 (689)
..-.|+++|+.+....+ .+. .+.+ ...+.. +..++. +..+..+..|++++.+++
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~ 653 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVL 653 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHH
Confidence 56788889988876422 111 1111 111222 444453 457888999999999999
Q ss_pred hCCHhhHHHHHhCCChHHHHHhhhcC-CHHHHHHHHHHHHHhh
Q 005598 638 TNSSRFCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLSYFR 679 (689)
Q Consensus 638 ~~~~~~~~~lv~~g~i~~L~~LL~~~-~~~vr~~A~~lL~~L~ 679 (689)
...++++..+.+.|+++.+..+-... ...+++.+..++..+.
T Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 696 (699)
T KOG3665|consen 654 EQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCE 696 (699)
T ss_pred HcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhccc
Confidence 99998999999999999988875443 3456666666655544
No 236
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.56 E-value=3.2 Score=51.97 Aligned_cols=233 Identities=16% Similarity=0.108 Sum_probs=119.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHH-hcCcHHHHHHhhcCCCHHHHHHHHHHHHHh-hc-CCccH
Q 005598 404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIA-NCGAINILVDMLHSSETKIQENAVTALLNL-SI-NDNNK 480 (689)
Q Consensus 404 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~-~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nL-s~-~~~~k 480 (689)
.....|...+.+.+++.+..++..|..+.+.-...+.... ......++..+|..+|+-+|..|..-|+-+ .. +...|
T Consensus 818 ~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k 897 (1702)
T KOG0915|consen 818 IILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLK 897 (1702)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhH
Confidence 3456677777899999887766655555443222222222 224557788888888877777777666433 11 22223
Q ss_pred HHHHHcCCHHHHHHHHcCCCHH-------HHHHHHHHHH------hcccCchhHH---HHHhhCChHHHHHhhcCC-CHH
Q 005598 481 SAIANANAIEPLIHVLQTGSPE-------ARENAAATLF------SLSVIEDNKI---KIGRSGAIGPLVDLLGNG-TPR 543 (689)
Q Consensus 481 ~~i~~~g~l~~Lv~lL~s~~~~-------~~~~Aa~aL~------nLs~~~~~k~---~I~~~g~I~~Lv~LL~~~-~~~ 543 (689)
. +.+..|+.-|-.|... ...-.-++|. +|+.+.+... .+.+.+.|-..++|-++. ...
T Consensus 898 ~-----~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wn 972 (1702)
T KOG0915|consen 898 K-----SLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWN 972 (1702)
T ss_pred H-----HHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhh
Confidence 2 2334444444322110 1001111111 1111111000 111223444455555543 233
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCC
Q 005598 544 GKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGS 622 (689)
Q Consensus 544 v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s 622 (689)
.++-|+.=+..|+.....+.+-.-...||.|...= |++..+......++..|...+.....-.-..++.-|+.-|.+..
T Consensus 973 Sk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~ke 1052 (1702)
T KOG0915|consen 973 SKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKE 1052 (1702)
T ss_pred cccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchh
Confidence 33333333333333222222222345667777664 67777766666666666654333222222345666777777889
Q ss_pred HHHHHHHHHHHHHHhhCCH
Q 005598 623 ARGKENAAAALLQLCTNSS 641 (689)
Q Consensus 623 ~~~~e~Av~aL~~L~~~~~ 641 (689)
.++++.+|.+|..|..+.+
T Consensus 1053 wRVReasclAL~dLl~g~~ 1071 (1702)
T KOG0915|consen 1053 WRVREASCLALADLLQGRP 1071 (1702)
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 9999999999999998865
No 237
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.34 E-value=0.17 Score=54.51 Aligned_cols=49 Identities=18% Similarity=0.375 Sum_probs=40.1
Q ss_pred CCccccccccccccCce-----e---cCCCccccHHHHHHHHhcCC------CCCCCCCCcCC
Q 005598 98 PSDFCCPLSLELMTDPV-----I---VASGQTYERAFIKKWIDLGL------FVCPKTRQTLA 146 (689)
Q Consensus 98 p~~f~CpI~~~lm~dPV-----~---~~~G~ty~r~~I~~~l~~~~------~~cP~t~~~l~ 146 (689)
-.+..|=||++.-.+++ . .+|.|+||-.||.+|-.... ..||+||.+..
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 35799999999999998 3 46999999999999975432 45999997754
No 238
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=90.11 E-value=2.8 Score=43.48 Aligned_cols=94 Identities=17% Similarity=0.215 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhh-cCCccHHHHHHcCCHHHHHHHHcC
Q 005598 421 QREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLS-INDNNKSAIANANAIEPLIHVLQT 498 (689)
Q Consensus 421 q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s-~~~~v~~~Al~aL~nLs-~~~~~k~~i~~~g~l~~Lv~lL~s 498 (689)
...|+..|.-++--.+..|..+.+...+..|+.+|.. ..+.++..++.+|..+. .++.|...+-+.+|+..++.++++
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~ 187 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKS 187 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcc
Confidence 4567788888888889999999999999999999954 56788888888887764 567888888899999999999987
Q ss_pred C--CHHHHHHHHHHHHhc
Q 005598 499 G--SPEARENAAATLFSL 514 (689)
Q Consensus 499 ~--~~~~~~~Aa~aL~nL 514 (689)
. +.+++...+..|+-.
T Consensus 188 ~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 188 KSTDRELRLKCIEFLYFY 205 (257)
T ss_pred ccccHHHhHHHHHHHHHH
Confidence 5 466777777666543
No 239
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.07 E-value=0.16 Score=55.74 Aligned_cols=51 Identities=16% Similarity=0.441 Sum_probs=37.8
Q ss_pred CCCcccccccccccc-----------------CceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCC
Q 005598 97 IPSDFCCPLSLELMT-----------------DPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 147 (689)
Q Consensus 97 ~p~~f~CpI~~~lm~-----------------dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~ 147 (689)
+-+.--|+||+.-.. +=.++||.|.|-|.|+++|.+.-.-.||+||.+|..
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 444567999985321 123459999999999999998654569999999864
No 240
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=90.05 E-value=4.4 Score=45.84 Aligned_cols=152 Identities=16% Similarity=0.156 Sum_probs=109.4
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhcC-CC----hHHHHHHHHHHHHHhCCchhHH
Q 005598 529 AIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMD-PA----AGMVDKAVAVLANLATIPDGRV 603 (689)
Q Consensus 529 ~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL~-~~----~~v~e~Al~~L~nLa~~~e~r~ 603 (689)
....+++++.+++...+..|+.-|..|+........++...++..|..++. .+ ..+....+.++..+-.+.-.-=
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 346678888899888888899999999999999999999999999999983 22 2344455555555443221100
Q ss_pred HHHhcCcHHHHHHHh--ccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 005598 604 AIGQENGIPVLVEVV--ELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 680 (689)
Q Consensus 604 ~i~~~g~v~~Lv~lL--~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~ 680 (689)
......+|..+..+. +.....+-..|...|-++...+....+.+.++--++.|+..++.++.++...|..+|..+-.
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 011122333333333 22355567788899999988888788888899999999999999999999999888876643
No 241
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=89.77 E-value=0.67 Score=44.55 Aligned_cols=143 Identities=18% Similarity=0.154 Sum_probs=88.2
Q ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhc-hHHHH-H
Q 005598 489 IEPLIHVLQT--GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKA-R 564 (689)
Q Consensus 489 l~~Lv~lL~s--~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~-~~n~~-~ 564 (689)
+..++..|.. ...++|..+.-++..+- +..+... ..-+-+.+-.++..+..+....+..++..|-.- ++... .
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~-~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l 81 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEF-KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL 81 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHH-HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence 4455555543 45667777777777662 3333333 222233333444444444666677777766553 33333 3
Q ss_pred HHHhCcHHHHHHhcC---CChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhc-cCCHH-HHHHHHHHHHH
Q 005598 565 IVQAGAVKHLVDLMD---PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVE-LGSAR-GKENAAAALLQ 635 (689)
Q Consensus 565 lv~~G~v~~Lv~LL~---~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~-s~s~~-~~e~Av~aL~~ 635 (689)
+...|.++.++.++. .+..+...++.+|..-|.....|..+.+. +++.|-++++ +.++. ++..|+.+|..
T Consensus 82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~-~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKN-YVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHH-CHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHH-HHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 446899999999884 44556677888888888877777777655 4588888885 44565 68888777764
No 242
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.70 E-value=6.4 Score=46.83 Aligned_cols=121 Identities=16% Similarity=0.239 Sum_probs=83.6
Q ss_pred HHHHHHhCcHHHHHHhc---------CCChHHHHHHHHHHHHHhCCchhHHHHHh--------cCcHHHHHHHhc----c
Q 005598 562 KARIVQAGAVKHLVDLM---------DPAAGMVDKAVAVLANLATIPDGRVAIGQ--------ENGIPVLVEVVE----L 620 (689)
Q Consensus 562 ~~~lv~~G~v~~Lv~LL---------~~~~~v~e~Al~~L~nLa~~~e~r~~i~~--------~g~v~~Lv~lL~----s 620 (689)
...+.+.+++..++++. .+..+++..|+++|..+...++.+.+++. ..++..++..-. -
T Consensus 594 aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i 673 (1516)
T KOG1832|consen 594 AENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSI 673 (1516)
T ss_pred HHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccc
Confidence 34567788888888875 13457888999999999999999888763 124555544432 1
Q ss_pred CCHHHHHHHHHHHHHHhhCCHh-----------------------------------hHHHHHhCCChHHHHHhhhcCC-
Q 005598 621 GSARGKENAAAALLQLCTNSSR-----------------------------------FCSMVLQEGAVPPLVALSQSGT- 664 (689)
Q Consensus 621 ~s~~~~e~Av~aL~~L~~~~~~-----------------------------------~~~~lv~~g~i~~L~~LL~~~~- 664 (689)
.++..+..|..+|.|+.+..+. ....+...+||..|+.|++...
T Consensus 674 ~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P 753 (1516)
T KOG1832|consen 674 VDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNP 753 (1516)
T ss_pred cCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCC
Confidence 4789999999999997654321 1122223578999999998764
Q ss_pred ----HHHHHHHHHHHHHhhcCc
Q 005598 665 ----PRAKEKAQALLSYFRNQR 682 (689)
Q Consensus 665 ----~~vr~~A~~lL~~L~~~~ 682 (689)
.-+|.-|..+|--|.++.
T Consensus 754 ~t~aD~IRalAc~~L~GLaR~~ 775 (1516)
T KOG1832|consen 754 PTTADCIRALACRVLLGLARDD 775 (1516)
T ss_pred CCcHHHHHHHHHHHHhccccCc
Confidence 347777777776666554
No 243
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=89.55 E-value=2.2 Score=41.72 Aligned_cols=110 Identities=16% Similarity=0.221 Sum_probs=77.3
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCccc-HHHHHhcCcHHHHHHhhcC---------CCHHHHHHHHHHHHHh
Q 005598 404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDN-RMVIANCGAINILVDMLHS---------SETKIQENAVTALLNL 473 (689)
Q Consensus 404 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~n-r~~i~~~g~I~~Lv~lL~s---------~~~~v~~~Al~aL~nL 473 (689)
.....+++.+++..... ..+..|...-+..+.. -..|.+.||+..|+.+|.. .+...+..++.+|..|
T Consensus 66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 45677888887665432 4455555444433322 3456678999999998853 3457888899999999
Q ss_pred hcCCccHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHhcc
Q 005598 474 SINDNNKSAIAN-ANAIEPLIHVLQTGSPEARENAAATLFSLS 515 (689)
Q Consensus 474 s~~~~~k~~i~~-~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs 515 (689)
..+..+...+.. .+++..|+..|.+.+..++..++.+|..++
T Consensus 144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 887777777776 489999999999999999999999988775
No 244
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=89.27 E-value=0.12 Score=42.73 Aligned_cols=48 Identities=17% Similarity=0.424 Sum_probs=23.8
Q ss_pred cccccccccccc-C---ceec----CCCccccHHHHHHHHhc--CC--------CCCCCCCCcCCC
Q 005598 100 DFCCPLSLELMT-D---PVIV----ASGQTYERAFIKKWIDL--GL--------FVCPKTRQTLAH 147 (689)
Q Consensus 100 ~f~CpI~~~lm~-d---PV~~----~~G~ty~r~~I~~~l~~--~~--------~~cP~t~~~l~~ 147 (689)
+..|+||..... + |+++ .||++|=..|+.+||.. +. .+||.|+++++-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 467999998754 2 5553 58999999999999974 11 249999988753
No 245
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=89.26 E-value=8.6 Score=46.39 Aligned_cols=187 Identities=16% Similarity=0.143 Sum_probs=114.8
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCccHHH
Q 005598 404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNNKSA 482 (689)
Q Consensus 404 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s-~~~~v~~~Al~aL~nLs~~~~~k~~ 482 (689)
...+.+-..+.+.++..+.+|+..+........ ........|.+-.++..... .+..+...|+.+|..++..-..-..
T Consensus 253 ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~ 331 (815)
T KOG1820|consen 253 KITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFR 331 (815)
T ss_pred hcChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhH
Confidence 445667777888999999999998888776432 11111112344444444433 4566778888888877632111111
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhh-ch-H
Q 005598 483 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YH-E 560 (689)
Q Consensus 483 i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~~-~ 560 (689)
=...+.++.|+.-+......++..+..++-.++. .......++.+...++++++..+..+..++-.... .. .
T Consensus 332 ~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~ 405 (815)
T KOG1820|consen 332 KYAKNVFPSLLDRLKEKKSELRDALLKALDAILN------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK 405 (815)
T ss_pred HHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence 1223677888888877766666666665554432 01122567778888999999988887776655444 22 2
Q ss_pred HHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC
Q 005598 561 NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT 597 (689)
Q Consensus 561 n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~ 597 (689)
....-.-.++++.++... +.+.++...|+.+++.+..
T Consensus 406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 222223355677777776 6778888888877776654
No 246
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=89.25 E-value=12 Score=36.44 Aligned_cols=92 Identities=21% Similarity=0.225 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-
Q 005598 500 SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM- 578 (689)
Q Consensus 500 ~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL- 578 (689)
++.+|.+++.++.-|+....+ + -...++.+...|+++++.+++.|+.+|.+|...+-.+.+ ...+..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~---~-ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l~ 73 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN---L-VEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLLV 73 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH---H-HHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHHc
Confidence 367888999999988753221 1 124578899999999999999999999999765432221 22225555555
Q ss_pred CCChHHHHHHHHHHHHHhCC
Q 005598 579 DPAAGMVDKAVAVLANLATI 598 (689)
Q Consensus 579 ~~~~~v~e~Al~~L~nLa~~ 598 (689)
+++..++..|..++..+...
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKK 93 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 88889999999999988774
No 247
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=88.41 E-value=29 Score=36.34 Aligned_cols=216 Identities=18% Similarity=0.151 Sum_probs=123.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCccHHHHHH
Q 005598 408 KLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS--SETKIQENAVTALLNLSINDNNKSAIAN 485 (689)
Q Consensus 408 ~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s--~~~~v~~~Al~aL~nLs~~~~~k~~i~~ 485 (689)
.|=..|.+.++..+..|+..|......-+... ....-+..|+.++.+ .|......++.+|..|.......... .
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~-~ 78 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES-A 78 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-H
Confidence 44567888899999999988887655433221 122235556665533 45555555677776665322211100 0
Q ss_pred cCCHHHHHHHHc--CCCHHHHHHHHHHHHhcccCchhHHHHH--hhCChHHHHHhhcCC-CHHHHHHHHHHHHhhhhchH
Q 005598 486 ANAIEPLIHVLQ--TGSPEARENAAATLFSLSVIEDNKIKIG--RSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHE 560 (689)
Q Consensus 486 ~g~l~~Lv~lL~--s~~~~~~~~Aa~aL~nLs~~~~~k~~I~--~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~~~ 560 (689)
...+..+.+-.. +-....|..+-..|..|... ....+. ..+++..+++++..+ +|+....+...+..+...-+
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~--~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN--HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH--hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 111222222111 12245677777777776543 223332 236788888888765 88888888877776655322
Q ss_pred HHHHHHHhCcHHHHHHhc--------CC--Ch--HHH--HHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCCHHHH
Q 005598 561 NKARIVQAGAVKHLVDLM--------DP--AA--GMV--DKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGK 626 (689)
Q Consensus 561 n~~~lv~~G~v~~Lv~LL--------~~--~~--~v~--e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~ 626 (689)
. ...++.+.+.+ .+ +. .+. +...++...|+.++.-. .-++|.|++.|.+.++.++
T Consensus 157 -----~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~~~~~K 225 (262)
T PF14500_consen 157 -----I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDSTSPSVK 225 (262)
T ss_pred -----c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCCCcHHH
Confidence 1 33444444443 11 11 122 23334444455544322 3368999999999999999
Q ss_pred HHHHHHHHHHhhCC
Q 005598 627 ENAAAALLQLCTNS 640 (689)
Q Consensus 627 e~Av~aL~~L~~~~ 640 (689)
.-+..+|..++..-
T Consensus 226 ~D~L~tL~~c~~~y 239 (262)
T PF14500_consen 226 LDSLQTLKACIENY 239 (262)
T ss_pred HHHHHHHHHHHHHC
Confidence 99999999987654
No 248
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.37 E-value=0.25 Score=55.88 Aligned_cols=60 Identities=20% Similarity=0.348 Sum_probs=40.9
Q ss_pred Cccccccccccc----cCceecCCCccccHHHHHHHHhcCCCCCCCCC--Cc--CCCCCCCccHHHHHHHH
Q 005598 99 SDFCCPLSLELM----TDPVIVASGQTYERAFIKKWIDLGLFVCPKTR--QT--LAHTTLIPNYTVKALIA 161 (689)
Q Consensus 99 ~~f~CpI~~~lm----~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~--~~--l~~~~l~pn~~l~~~i~ 161 (689)
+-++|+||..+| ..||.+-||||.|+.|.+.-... +||.-+ -. ...+...-|++|-+.+.
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---scp~~~De~~~~~~~~e~p~n~alL~~~~ 77 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---SCPTKRDEDSSLMQLKEEPRNYALLRREH 77 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---cCCCCccccchhcChhhcchhHHHHHhhc
Confidence 347899997666 47999999999999999987654 477222 11 12234555677766543
No 249
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=88.20 E-value=2.9 Score=43.62 Aligned_cols=169 Identities=17% Similarity=0.119 Sum_probs=98.5
Q ss_pred HHHHHHHhcccCchhHHHHHhh--CChHHHHHhhcC----CCHHHHHHHHHHHHhhhhchHHHHHHHHhC--cHHHHHHh
Q 005598 506 NAAATLFSLSVIEDNKIKIGRS--GAIGPLVDLLGN----GTPRGKKDAATALFNLSIYHENKARIVQAG--AVKHLVDL 577 (689)
Q Consensus 506 ~Aa~aL~nLs~~~~~k~~I~~~--g~I~~Lv~LL~~----~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G--~v~~Lv~L 577 (689)
-+...++-++.++.....+... +....+..++.. .....+..+++++.|+..+...+..+.... .+-..+..
T Consensus 82 P~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~ 161 (268)
T PF08324_consen 82 PALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSS 161 (268)
T ss_dssp HHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHC
T ss_pred hHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHH
Confidence 3334444444444433333332 123444444432 367888899999999999888888777633 23333333
Q ss_pred c-CC----ChHHHHHHHHHHHHHhCCch-hH-HHHHhcCcHHHHHHHhcc--CCHHHHHHHHHHHHHHhhCCHhhHHHHH
Q 005598 578 M-DP----AAGMVDKAVAVLANLATIPD-GR-VAIGQENGIPVLVEVVEL--GSARGKENAAAALLQLCTNSSRFCSMVL 648 (689)
Q Consensus 578 L-~~----~~~v~e~Al~~L~nLa~~~e-~r-~~i~~~g~v~~Lv~lL~s--~s~~~~e~Av~aL~~L~~~~~~~~~~lv 648 (689)
+ .. +..+...+..++.|++..-- .+ ..=.....+..+++.+.. .++++...++.+|.+|+..+........
T Consensus 162 ~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~ 241 (268)
T PF08324_consen 162 LLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAK 241 (268)
T ss_dssp CCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCC
T ss_pred HhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHH
Confidence 3 33 45666777788888865111 01 000011134555553322 6899999999999999977765554444
Q ss_pred hCCChHHHHHhhhcC-CHHHHHHHHHH
Q 005598 649 QEGAVPPLVALSQSG-TPRAKEKAQAL 674 (689)
Q Consensus 649 ~~g~i~~L~~LL~~~-~~~vr~~A~~l 674 (689)
..|+...+......+ .+++++.+.+|
T Consensus 242 ~l~~~~~~~~~~~~~~e~ri~~v~~ei 268 (268)
T PF08324_consen 242 SLDVKSVLSKKANKSKEPRIKEVAAEI 268 (268)
T ss_dssp CCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HcChHHHHHHHHhcccchHHHHHhccC
Confidence 456665655555444 58899888765
No 250
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=88.16 E-value=36 Score=41.78 Aligned_cols=244 Identities=17% Similarity=0.153 Sum_probs=131.4
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCc-c
Q 005598 402 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-ETKIQENAVTALLNLSINDN-N 479 (689)
Q Consensus 402 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~-~~~v~~~Al~aL~nLs~~~~-~ 479 (689)
.+..+..|+..|++.+..++-.|++.+..++...| +... + .+|...+.++.-. +...-..|+.+|+.|+.--- .
T Consensus 339 vE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~La-d-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLl 414 (1133)
T KOG1943|consen 339 VEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PELA-D-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLL 414 (1133)
T ss_pred HHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHHH-H-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcc
Confidence 35788889999999998899999999999999776 2222 2 3555556655432 34455688888888873210 0
Q ss_pred HHHHHHcCCHHHHHHHHcC--------CCHHHHHHHHHHHHhcccCchhH--HHHHhhCChHHHHHhhcCCCHHHHHHHH
Q 005598 480 KSAIANANAIEPLIHVLQT--------GSPEARENAAATLFSLSVIEDNK--IKIGRSGAIGPLVDLLGNGTPRGKKDAA 549 (689)
Q Consensus 480 k~~i~~~g~l~~Lv~lL~s--------~~~~~~~~Aa~aL~nLs~~~~~k--~~I~~~g~I~~Lv~LL~~~~~~v~~~Al 549 (689)
-..+ ...++.+++-|.- ....+|..|+.++|.++...+.. ..+...=+-..|...+-+....++++|.
T Consensus 415 ps~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAs 492 (1133)
T KOG1943|consen 415 PSLL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAAS 492 (1133)
T ss_pred hHHH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHH
Confidence 0001 1345555555532 23568999999999997643322 1121111111223334455677888888
Q ss_pred HHHHhhhhchHHHHHHHHhCcHHHHHHhcC-CChHHHHHHHHHHHH-HhCCchhHHHHHhcCcHHHHH-HHhccCCHHHH
Q 005598 550 TALFNLSIYHENKARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLAN-LATIPDGRVAIGQENGIPVLV-EVVELGSARGK 626 (689)
Q Consensus 550 ~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL~-~~~~v~e~Al~~L~n-La~~~e~r~~i~~~g~v~~Lv-~lL~s~s~~~~ 626 (689)
.|+.....-..|.. -+++.+. ..+ -.-.....+-..|.. ++..+..++-+ +..|+ +.+..-+..++
T Consensus 493 AAlqE~VGR~~n~p-----~Gi~Lis-~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~-----f~~L~t~Kv~HWd~~ir 561 (1133)
T KOG1943|consen 493 AALQENVGRQGNFP-----HGISLIS-TIDYFSVTNRSNCYLDLCVSIAEFSGYREPV-----FNHLLTKKVCHWDVKIR 561 (1133)
T ss_pred HHHHHHhccCCCCC-----Cchhhhh-hcchhhhhhhhhHHHHHhHHHHhhhhHHHHH-----HHHHHhcccccccHHHH
Confidence 77765432211110 1111111 110 000011111111111 12222222222 22222 22455689999
Q ss_pred HHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHH
Q 005598 627 ENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPR 666 (689)
Q Consensus 627 e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~ 666 (689)
+.|+++|..|....++ ....+.+++|+....+.+..
T Consensus 562 elaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~ 597 (1133)
T KOG1943|consen 562 ELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDAS 597 (1133)
T ss_pred HHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChH
Confidence 9999999998876653 33456777777776666543
No 251
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.01 E-value=17 Score=42.59 Aligned_cols=105 Identities=19% Similarity=0.176 Sum_probs=76.3
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHH
Q 005598 446 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG 525 (689)
Q Consensus 446 g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~ 525 (689)
|.+..|++...+++..|+...+.+|..+..........+-.+....|..-|.+..+.+|..|+.+|..+=.++..-
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de---- 160 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE---- 160 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC----
Confidence 6777777888888999999999999888764333444444566677777777888999999999999885322110
Q ss_pred hhCChHHHHHhhcCC-CHHHHHHHHHHHHh
Q 005598 526 RSGAIGPLVDLLGNG-TPRGKKDAATALFN 554 (689)
Q Consensus 526 ~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~n 554 (689)
+..++..++.+++.+ +++++++|+..|.+
T Consensus 161 e~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 161 ECPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred cccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 125677888888865 78999987765543
No 252
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=87.70 E-value=31 Score=41.50 Aligned_cols=221 Identities=15% Similarity=0.114 Sum_probs=132.6
Q ss_pred CCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCccHHHHH--HcCCHHH
Q 005598 415 STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-ETKIQENAVTALLNLSINDNNKSAIA--NANAIEP 491 (689)
Q Consensus 415 s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~-~~~v~~~Al~aL~nLs~~~~~k~~i~--~~g~l~~ 491 (689)
+..|.....+...+..++.....+...+. -++...+..+..+ .+-++..|+.++.-.+. ...+. ..+.+..
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~----~~vl~~~~p~ild~ 534 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCK----VKVLLSLQPMILDG 534 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccC----ceeccccchHHHHH
Confidence 34555555666666665554333333322 1233334444332 33455666666655541 11111 1256677
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhc--CCCHHHHHHHHHHHHhhhhchHHHHHHHHhC
Q 005598 492 LIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG--NGTPRGKKDAATALFNLSIYHENKARIVQAG 569 (689)
Q Consensus 492 Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~--~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G 569 (689)
|+++....+.++.-..+.+|...+..+.-.....+.-+.|..+.++. +.++.+...+-.++..|+....+... ....
T Consensus 535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~-m~e~ 613 (1005)
T KOG2274|consen 535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGP-MQER 613 (1005)
T ss_pred HHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcc-hHHH
Confidence 77777777778877778888887765544444445566777777754 34677777777777777764333332 4456
Q ss_pred cHHHHHHhcC-CC----hHHHHHHHHHHHHHhCCc-hhHHHHHhcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhhCCHh
Q 005598 570 AVKHLVDLMD-PA----AGMVDKAVAVLANLATIP-DGRVAIGQENGIPVLVEVV-ELGSARGKENAAAALLQLCTNSSR 642 (689)
Q Consensus 570 ~v~~Lv~LL~-~~----~~v~e~Al~~L~nLa~~~-e~r~~i~~~g~v~~Lv~lL-~s~s~~~~e~Av~aL~~L~~~~~~ 642 (689)
.+|.|+..|. +. ..++.-|+.+|..+.+.. ..-....-.-+.|.+.+.. .+++..+-.+|..+|..+...+.+
T Consensus 614 ~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~e 693 (1005)
T KOG2274|consen 614 LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLE 693 (1005)
T ss_pred HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHH
Confidence 8899999983 22 466777888888776633 2222222223456666664 567888889999999998887764
No 253
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.69 E-value=2.5 Score=49.87 Aligned_cols=39 Identities=18% Similarity=0.306 Sum_probs=33.4
Q ss_pred cccccccccccCcee-cCCCccccHHHHHHHHhcCCCCCCCCCC
Q 005598 101 FCCPLSLELMTDPVI-VASGQTYERAFIKKWIDLGLFVCPKTRQ 143 (689)
Q Consensus 101 f~CpI~~~lm~dPV~-~~~G~ty~r~~I~~~l~~~~~~cP~t~~ 143 (689)
-.|..|.-.+.=|++ ..|||.|-++|.+ .+...||.|.-
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP 880 (933)
T ss_pred eeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence 579999999999998 6999999999988 45566999965
No 254
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.53 E-value=23 Score=42.32 Aligned_cols=186 Identities=13% Similarity=0.146 Sum_probs=111.5
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 005598 403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 482 (689)
Q Consensus 403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~ 482 (689)
....++.+..+.+..+.++..++..|+.+.... +....+...+++...+..|...|+-+-.+|+..+..||.-
T Consensus 726 ~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev------ 798 (982)
T KOG4653|consen 726 IEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV------ 798 (982)
T ss_pred HHHHHHHHHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh------
Confidence 456778888888888889999999999998854 4555566678999999999999988888888877777632
Q ss_pred HHHcCCHHHHHH-HHcCC---CHHHHHHHHHHHHhcccC-chhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhh
Q 005598 483 IANANAIEPLIH-VLQTG---SPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 557 (689)
Q Consensus 483 i~~~g~l~~Lv~-lL~s~---~~~~~~~Aa~aL~nLs~~-~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~ 557 (689)
.....++.+.. ..+.. ..+.+...-.++.++... .+-.... ..-.+...+..+++++...+..++.++.+||.
T Consensus 799 -y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y-~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq 876 (982)
T KOG4653|consen 799 -YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKY-KAVLINTFLSGVREPDHEFRASSLANLGQLCQ 876 (982)
T ss_pred -cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHH-HHHHHHHHHHhcCCchHHHHHhHHHHHHHHHH
Confidence 33345666655 33221 123333334444444321 1100000 01234455555666666678888888888877
Q ss_pred chHHHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhC
Q 005598 558 YHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLAT 597 (689)
Q Consensus 558 ~~~n~~~lv~~G~v~~Lv~LL--~~~~~v~e~Al~~L~nLa~ 597 (689)
-...+..=.=..++..++.+. +...-++..|+-++..+-.
T Consensus 877 ~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 877 LLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 322111111233444444444 3334455666666666554
No 255
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=87.51 E-value=32 Score=35.80 Aligned_cols=195 Identities=23% Similarity=0.227 Sum_probs=116.6
Q ss_pred hhHHHHHHHHhcC--CCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC---
Q 005598 403 ETQVRKLVEDLKS--TSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIND--- 477 (689)
Q Consensus 403 ~~~V~~Lv~~L~s--~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~--- 477 (689)
...|+.|+.-|.. ..+.++..|..+|..+.. .+.++.|-+..+..-..|.+....+|..+-+..
T Consensus 66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~~-----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~ 134 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIID 134 (289)
T ss_pred chhhHHHHHHhcccccchHHHHHHHHHHHhhcc-----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccc
Confidence 3577888888874 556677788888877652 134555656665555566666556665553211
Q ss_pred --ccHHHHH--------HcCCHHHHHHHHcCCC--HHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHH
Q 005598 478 --NNKSAIA--------NANAIEPLIHVLQTGS--PEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGK 545 (689)
Q Consensus 478 --~~k~~i~--------~~g~l~~Lv~lL~s~~--~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~ 545 (689)
.+..... ...-+..|-..|...+ .--+..|...|.|+- ...+|..|++-|..++.-.+
T Consensus 135 ~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g----------~EeaI~al~~~l~~~Salfr 204 (289)
T KOG0567|consen 135 KIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIG----------TEEAINALIDGLADDSALFR 204 (289)
T ss_pred cccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccC----------cHHHHHHHHHhcccchHHHH
Confidence 0000111 1122344443333322 223444444444441 23456677777777777777
Q ss_pred HHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-C--CChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCC
Q 005598 546 KDAATALFNLSIYHENKARIVQAGAVKHLVDLM-D--PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGS 622 (689)
Q Consensus 546 ~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-~--~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s 622 (689)
..++.++..| ...-+++.|.+.| + +..-+...|+.+|+.++. ..+++.|.+.+...+
T Consensus 205 hEvAfVfGQl----------~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~ 264 (289)
T KOG0567|consen 205 HEVAFVFGQL----------QSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEE 264 (289)
T ss_pred HHHHHHHhhc----------cchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcH
Confidence 7777777665 3345678888877 2 334455688888888765 346788888888888
Q ss_pred HHHHHHHHHHHHHHhh
Q 005598 623 ARGKENAAAALLQLCT 638 (689)
Q Consensus 623 ~~~~e~Av~aL~~L~~ 638 (689)
+-+++.+..+|-.+-.
T Consensus 265 ~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 265 RVVRESCEVALDMLEY 280 (289)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888765544
No 256
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=87.16 E-value=0.44 Score=50.06 Aligned_cols=50 Identities=20% Similarity=0.275 Sum_probs=35.5
Q ss_pred CccccccccccccC--cee--cCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCC
Q 005598 99 SDFCCPLSLELMTD--PVI--VASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT 149 (689)
Q Consensus 99 ~~f~CpI~~~lm~d--PV~--~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~ 149 (689)
+++ ||+|.+.|.- --. -+||+..||.|-..--+.-+..||.||..++.+.
T Consensus 14 ed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 14 EDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred ccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 445 9999998842 222 3689999999865544443456999998887654
No 257
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=87.15 E-value=0.48 Score=47.44 Aligned_cols=63 Identities=17% Similarity=0.298 Sum_probs=46.6
Q ss_pred cccccccccccCcee-cCCCccccHHHHHHHHhcC-CCCCCC--CCCcCCCCCCCccHHH--HHHHHHH
Q 005598 101 FCCPLSLELMTDPVI-VASGQTYERAFIKKWIDLG-LFVCPK--TRQTLAHTTLIPNYTV--KALIANW 163 (689)
Q Consensus 101 f~CpI~~~lm~dPV~-~~~G~ty~r~~I~~~l~~~-~~~cP~--t~~~l~~~~l~pn~~l--~~~i~~~ 163 (689)
.+|||+.....-|++ ..|.|.|||..|..+++-. ...||. |-+.+..+.++-.+-| |..|...
T Consensus 190 nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~IlE~R~~~~~i 258 (275)
T COG5627 190 NRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHILEKREAMKYI 258 (275)
T ss_pred ccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHHHHHHHHHHH
Confidence 589999999999987 5799999999999999843 234885 6566777777755544 4444433
No 258
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=86.75 E-value=44 Score=38.66 Aligned_cols=132 Identities=22% Similarity=0.311 Sum_probs=80.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-CccHHH
Q 005598 404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSA 482 (689)
Q Consensus 404 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~-~~~k~~ 482 (689)
..-..++...+ ++...+.-|+..|..+.+.-|.... .+|..++.|...++..|+..|+..|-.+|.+ ++....
T Consensus 23 ~~y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k 96 (556)
T PF05918_consen 23 EDYKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK 96 (556)
T ss_dssp HHHHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH
T ss_pred HHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH
Confidence 34455555554 5677888899999999886655433 4688999999999999999999999999865 344444
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhc---CCCHHHHHHHHHHHH
Q 005598 483 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG---NGTPRGKKDAATALF 553 (689)
Q Consensus 483 i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~---~~~~~v~~~Al~aL~ 553 (689)
+ ...|+++|.+.+..-...+-.+|..|...+ ..+.+..|..-+. .++..++..++..|.
T Consensus 97 v-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d-------~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 97 V-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQD-------PKGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp H-----HHHHHHHTT---HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred H-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 4 457888998776544444444444432110 1245555555554 456667777776664
No 259
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.09 E-value=58 Score=39.68 Aligned_cols=216 Identities=14% Similarity=0.094 Sum_probs=121.0
Q ss_pred HHHHHHHHHHhhcc---CcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhh-cCCccHHHHHHcCCHHHHHHHH
Q 005598 421 QREATAELRLLAKH---NMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS-INDNNKSAIANANAIEPLIHVL 496 (689)
Q Consensus 421 q~~Al~~L~~La~~---s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs-~~~~~k~~i~~~g~l~~Lv~lL 496 (689)
..-|+..+..|+.. ....+..+ +.=.++.+...++++.--++..||+++..++ .+=.... .-..++......|
T Consensus 435 kdGAL~~vgsl~~~L~K~s~~~~~m-E~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~--~l~~ale~t~~~l 511 (1010)
T KOG1991|consen 435 KDGALRMVGSLASILLKKSPYKSQM-EYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPN--NLSEALELTHNCL 511 (1010)
T ss_pred hhhHHHHHHHHHHHHccCCchHHHH-HHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChH--HHHHHHHHHHHHh
Confidence 34566666666521 21222222 2234566667777877889999999999987 3322222 2234566667767
Q ss_pred c-CCCHHHHHHHHHHHHhcccCch-hHHHHHhh--CChHHHHHhhcCCCHHHHHHHHHHHH-hhhhchHHHHHHHH--hC
Q 005598 497 Q-TGSPEARENAAATLFSLSVIED-NKIKIGRS--GAIGPLVDLLGNGTPRGKKDAATALF-NLSIYHENKARIVQ--AG 569 (689)
Q Consensus 497 ~-s~~~~~~~~Aa~aL~nLs~~~~-~k~~I~~~--g~I~~Lv~LL~~~~~~v~~~Al~aL~-nLs~~~~n~~~lv~--~G 569 (689)
. +....++..|+-+|..+..+.. ....+... +.+..|+.+.+.-..+.....+..+. ..+. +.....++ ..
T Consensus 512 ~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fse--ElsPfA~eL~q~ 589 (1010)
T KOG1991|consen 512 LNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSE--ELSPFAVELCQN 589 (1010)
T ss_pred ccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH--hhchhHHHHHHH
Confidence 6 6678899999999998866544 33444433 67778888877655444444444332 2111 11111111 22
Q ss_pred cHHHHHHhcC----CC---hHHHHHHHHHHHHHhC---CchhHHHHH---hcCcHHHHHHHhccCCHHHHHHHHHHHHHH
Q 005598 570 AVKHLVDLMD----PA---AGMVDKAVAVLANLAT---IPDGRVAIG---QENGIPVLVEVVELGSARGKENAAAALLQL 636 (689)
Q Consensus 570 ~v~~Lv~LL~----~~---~~v~e~Al~~L~nLa~---~~e~r~~i~---~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L 636 (689)
.....++++. .+ .+-.-.|.++|..+.. +-+....+. +..+++.+-.+|++.-.+.-+.+..++..+
T Consensus 590 La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~ 669 (1010)
T KOG1991|consen 590 LAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSL 669 (1010)
T ss_pred HHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 3344444442 11 2223355566655443 333444343 233567777777777777888888888877
Q ss_pred hhCCH
Q 005598 637 CTNSS 641 (689)
Q Consensus 637 ~~~~~ 641 (689)
....+
T Consensus 670 t~~~~ 674 (1010)
T KOG1991|consen 670 TFLSK 674 (1010)
T ss_pred hhhhc
Confidence 76653
No 260
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=86.00 E-value=58 Score=36.69 Aligned_cols=186 Identities=13% Similarity=0.101 Sum_probs=108.1
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCC----ccHHHHHHcCCHHHHHHHHcCCC-------HHHHHHHHHHHHhcccCch
Q 005598 451 LVDMLHSSETKIQENAVTALLNLSIND----NNKSAIANANAIEPLIHVLQTGS-------PEARENAAATLFSLSVIED 519 (689)
Q Consensus 451 Lv~lL~s~~~~v~~~Al~aL~nLs~~~----~~k~~i~~~g~l~~Lv~lL~s~~-------~~~~~~Aa~aL~nLs~~~~ 519 (689)
+..++...+..-+..|+-....++.+. .+|..+.++=+.+-+=++|.+++ .-.+..++.+|.-.+..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 344444444444555555556665443 45777888866666777776431 2345566667777777666
Q ss_pred hHHHHHhhCChHHHHHhhcCC-CH------HHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc--CCChHHHHHHHH
Q 005598 520 NKIKIGRSGAIGPLVDLLGNG-TP------RGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVA 590 (689)
Q Consensus 520 ~k~~I~~~g~I~~Lv~LL~~~-~~------~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL--~~~~~v~e~Al~ 590 (689)
....----..||.|..++..+ ++ -....+-.+|..++..+.+...++..|+++++.++- .+...-...|+.
T Consensus 96 lAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~ 175 (698)
T KOG2611|consen 96 LASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALALK 175 (698)
T ss_pred hccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHH
Confidence 422111115688888888743 22 367788899999999999999999999999999874 222222334444
Q ss_pred HHHHHhC----CchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhh
Q 005598 591 VLANLAT----IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 638 (689)
Q Consensus 591 ~L~nLa~----~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~ 638 (689)
++-.+.. .++.-..+.. .+..+..=+...+...+...+..|..+..
T Consensus 176 Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl~ 225 (698)
T KOG2611|consen 176 VLLLLVSKLDCWSETIERFLA--LIAAVARDFAVLHNALKFELCHLLSAVLS 225 (698)
T ss_pred HHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 4444333 1222222211 13333333333455666777777765433
No 261
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.77 E-value=68 Score=36.26 Aligned_cols=261 Identities=13% Similarity=0.099 Sum_probs=135.6
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHH-hhcCCCHHHHHHHHHHHHHhhcCCccH
Q 005598 402 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVD-MLHSSETKIQENAVTALLNLSINDNNK 480 (689)
Q Consensus 402 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~-lL~s~~~~v~~~Al~aL~nLs~~~~~k 480 (689)
.+.++..+....++++...+..|++.|.+.+...|........ -.+..++. +.+..+.+|+.+++.+|.-+.....++
T Consensus 256 L~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~ 334 (533)
T KOG2032|consen 256 LGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASND 334 (533)
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhc
Confidence 3567788888888888888899999999999875444333332 23444444 444456889999999887765322221
Q ss_pred HHHHHcCC---HHHHHHHHcCCCHHHHHHHHHHHHhcccCch--hHHHHHh--hCChHHHHHhhcCCCHHHHHHHHHHHH
Q 005598 481 SAIANANA---IEPLIHVLQTGSPEARENAAATLFSLSVIED--NKIKIGR--SGAIGPLVDLLGNGTPRGKKDAATALF 553 (689)
Q Consensus 481 ~~i~~~g~---l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~--~k~~I~~--~g~I~~Lv~LL~~~~~~v~~~Al~aL~ 553 (689)
. ...+. .-.+..+.++.+++.+.+|..+...|+.... .+..+.+ .+...+++..|.+.++.+-. |++...
T Consensus 335 ~--l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-ACr~~~ 411 (533)
T KOG2032|consen 335 D--LESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-ACRSEL 411 (533)
T ss_pred c--hhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-HHHHHH
Confidence 1 12222 3335567778889999999888888876332 2333332 23445555566666665444 444444
Q ss_pred hhhhchHHHHHHHHhCcHHHHHHhcCCChHHHHHHHHHHHH-----Hh-CCchhHHHHHhcCcHHHHHHHhccCCHHHHH
Q 005598 554 NLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLAN-----LA-TIPDGRVAIGQENGIPVLVEVVELGSARGKE 627 (689)
Q Consensus 554 nLs~~~~n~~~lv~~G~v~~Lv~LL~~~~~v~e~Al~~L~n-----La-~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e 627 (689)
..+...-.+.. ..+.++..++. ... -...+.| |. .+++--..+ ......++.+.-+.+++
T Consensus 412 ~~c~p~l~rke--~~~~~q~~ld~-----~~~--~~q~Fyn~~c~~L~~i~~d~l~~~-----~t~~~~~f~sswe~vr~ 477 (533)
T KOG2032|consen 412 RTCYPNLVRKE--LYHLFQESLDT-----DMA--RFQAFYNQWCIQLNHIHPDILMLL-----LTEDQHIFSSSWEQVRE 477 (533)
T ss_pred HhcCchhHHHH--HHHHHhhhhHH-----hHH--HHHHHHHHHHHHHhhhCHHHHHHH-----HHhchhheecchHHHHH
Confidence 43332211211 11222222110 000 1111111 00 011100000 01111122223345555
Q ss_pred HHHHHHHHHhhCC-HhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 005598 628 NAAAALLQLCTNS-SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 680 (689)
Q Consensus 628 ~Av~aL~~L~~~~-~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~ 680 (689)
.|+..-.++.-+. +.++..+-..-....|..+.+...+.+++.|..+|..+..
T Consensus 478 aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 478 AAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 5555444444332 2333333223345567777778889999999988877653
No 262
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=85.42 E-value=22 Score=39.76 Aligned_cols=187 Identities=16% Similarity=0.172 Sum_probs=110.4
Q ss_pred hhHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCCccH
Q 005598 403 ETQVRKLVEDLKS-TSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML-HSSETKIQENAVTALLNLSINDNNK 480 (689)
Q Consensus 403 ~~~V~~Lv~~L~s-~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL-~s~~~~v~~~Al~aL~nLs~~~~~k 480 (689)
...+..++....+ .++..+..++..+..+.-.-+..- .+ ..++..+...+ .......+..++.++.-++ |
T Consensus 188 ~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~-~l--~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~-----K 259 (415)
T PF12460_consen 188 EELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD-DL--DEFLDSLLQSISSSEDSELRPQALEILIWIT-----K 259 (415)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh-hH--HHHHHHHHhhhcccCCcchhHHHHHHHHHHH-----H
Confidence 3577778877664 456667777777777765311111 11 12333443333 2223333334444333322 2
Q ss_pred HHHHH-----cCCHHHHHHHHcCCCHHHHHHHHHHHHhcccC-chh--------HHHHHhh----CChHHHHHhhcCCCH
Q 005598 481 SAIAN-----ANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDN--------KIKIGRS----GAIGPLVDLLGNGTP 542 (689)
Q Consensus 481 ~~i~~-----~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~-~~~--------k~~I~~~----g~I~~Lv~LL~~~~~ 542 (689)
..++. ...+..|+.+|.+ .++...|+..+.-|..+ ++. -..+... -.+|.|++..+..+.
T Consensus 260 aLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~ 337 (415)
T PF12460_consen 260 ALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD 337 (415)
T ss_pred HHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh
Confidence 22222 1346667788866 66777888888877665 331 1122222 456777777777676
Q ss_pred HHHHHHHHHHHhhhhchHHHHHHHH-hCcHHHHHHhcC-CChHHHHHHHHHHHHHhCCc
Q 005598 543 RGKKDAATALFNLSIYHENKARIVQ-AGAVKHLVDLMD-PAAGMVDKAVAVLANLATIP 599 (689)
Q Consensus 543 ~v~~~Al~aL~nLs~~~~n~~~lv~-~G~v~~Lv~LL~-~~~~v~e~Al~~L~nLa~~~ 599 (689)
..+..-+.||.++..+-+....+-+ ...+|.|++-|+ ++..+...++.+|..+....
T Consensus 338 ~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 338 EIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred hhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 6888888899988875443333333 568888999884 56678889999999888755
No 263
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=85.15 E-value=23 Score=41.17 Aligned_cols=160 Identities=14% Similarity=0.195 Sum_probs=97.5
Q ss_pred hhcCCCHHHHHHHHHHHHHhhcCCccHHHHHH----cCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCC
Q 005598 454 MLHSSETKIQENAVTALLNLSINDNNKSAIAN----ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGA 529 (689)
Q Consensus 454 lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~----~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~ 529 (689)
.+.....+++.-|+-+|.-+..+...-..+.. ...+..++..+. +.+..+..++++|.|+-.+...+..+...
T Consensus 552 ~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~-- 628 (745)
T KOG0301|consen 552 ILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR-- 628 (745)
T ss_pred HHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH--
Confidence 33445667777777777666655443333322 246666676665 66778889999999998887777666543
Q ss_pred hHHHHHhh---cC-CCHHHHHHHHHHHHhhhh--chHHHHHHHHhCcHHHHHHhc----CCChH--HHHHHHHHHHHHhC
Q 005598 530 IGPLVDLL---GN-GTPRGKKDAATALFNLSI--YHENKARIVQAGAVKHLVDLM----DPAAG--MVDKAVAVLANLAT 597 (689)
Q Consensus 530 I~~Lv~LL---~~-~~~~v~~~Al~aL~nLs~--~~~n~~~lv~~G~v~~Lv~LL----~~~~~--v~e~Al~~L~nLa~ 597 (689)
+..++..+ +. .+..+..+.+....|++. ...+-+ .+..+.|..++ ++-.+ -.-+.+-+|.+|+.
T Consensus 629 ~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t 704 (745)
T KOG0301|consen 629 LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMT 704 (745)
T ss_pred HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcc
Confidence 22222222 22 245566665556666654 122211 45555555443 33222 23456778888998
Q ss_pred CchhHHHHHhcCcHHHHHHHhcc
Q 005598 598 IPDGRVAIGQENGIPVLVEVVEL 620 (689)
Q Consensus 598 ~~e~r~~i~~~g~v~~Lv~lL~s 620 (689)
.+.....+.+.-.+..+++.++.
T Consensus 705 ~~~~~~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 705 VDASVIQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred ccHHHHHHHHhcCHHHHHHHHHH
Confidence 88888888887778888888864
No 264
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=85.13 E-value=0.41 Score=56.41 Aligned_cols=46 Identities=17% Similarity=0.442 Sum_probs=35.0
Q ss_pred ccccccccccc--C---cee--cCCCccccHHHHHHHHhcC-CCCCCCCCCcCC
Q 005598 101 FCCPLSLELMT--D---PVI--VASGQTYERAFIKKWIDLG-LFVCPKTRQTLA 146 (689)
Q Consensus 101 f~CpI~~~lm~--d---PV~--~~~G~ty~r~~I~~~l~~~-~~~cP~t~~~l~ 146 (689)
-.|+||..++. | |-- ..|.|.|--+|+-+|+..+ ..+||.||..++
T Consensus 1470 eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1470 EECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred chhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 46999998875 3 322 2377899999999999864 567999997654
No 265
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=85.08 E-value=15 Score=42.30 Aligned_cols=97 Identities=18% Similarity=0.297 Sum_probs=59.3
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhh-cCCccHH
Q 005598 403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS-INDNNKS 481 (689)
Q Consensus 403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs-~~~~~k~ 481 (689)
...+..++.+..+.+..++.+|++.|-.+|+++++.-..+ +..|+++|.++++.....+-.+|..|- .++
T Consensus 58 ~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~---- 128 (556)
T PF05918_consen 58 EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQDP---- 128 (556)
T ss_dssp HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH-H----
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcCc----
Confidence 4678889999999999999999999999999877665555 568999999887654444444444432 111
Q ss_pred HHHHcCCHHHHHHHHc---CCCHHHHHHHHHHHH
Q 005598 482 AIANANAIEPLIHVLQ---TGSPEARENAAATLF 512 (689)
Q Consensus 482 ~i~~~g~l~~Lv~lL~---s~~~~~~~~Aa~aL~ 512 (689)
.+.+..|+..+. +++..+|+.++..|.
T Consensus 129 ----k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 129 ----KGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp ----HHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 234455554443 566778888776663
No 266
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=84.89 E-value=20 Score=41.68 Aligned_cols=165 Identities=18% Similarity=0.193 Sum_probs=100.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHh---cCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHH
Q 005598 409 LVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIAN---CGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIAN 485 (689)
Q Consensus 409 Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~---~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~ 485 (689)
.+..+..-.++.+..|+..||.+.++...+-..+-. +..+..|+..+. .++..+..++++|.|+-.++.++..+..
T Consensus 549 ~l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s 627 (745)
T KOG0301|consen 549 ALAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMS 627 (745)
T ss_pred HHHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHH
Confidence 334444556778889999999998876555444332 235555555554 4566778889999999877777777665
Q ss_pred c--CCHHHHHHHHcCCCHHHHHHHHHHHHhccc--CchhHHHHHhhCChHHHHHhhcC-----CCHHHHHHHHHHHHhhh
Q 005598 486 A--NAIEPLIHVLQTGSPEARENAAATLFSLSV--IEDNKIKIGRSGAIGPLVDLLGN-----GTPRGKKDAATALFNLS 556 (689)
Q Consensus 486 ~--g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~--~~~~k~~I~~~g~I~~Lv~LL~~-----~~~~v~~~Al~aL~nLs 556 (689)
. -.+..++..=...+..++...+....|++. ...+- +.+..+.|..++.. .+-+.....+.||.+|+
T Consensus 628 ~~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~ 703 (745)
T KOG0301|consen 628 RLESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLM 703 (745)
T ss_pred HHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhc
Confidence 4 122222222222334555555555555543 11111 13445554444432 13456778888999999
Q ss_pred hchHHHHHHHHhCcHHHHHHhc
Q 005598 557 IYHENKARIVQAGAVKHLVDLM 578 (689)
Q Consensus 557 ~~~~n~~~lv~~G~v~~Lv~LL 578 (689)
..+....++...--|..+++-+
T Consensus 704 t~~~~~~~~A~~~~v~sia~~~ 725 (745)
T KOG0301|consen 704 TVDASVIQLAKNRSVDSIAKKL 725 (745)
T ss_pred cccHHHHHHHHhcCHHHHHHHH
Confidence 9888888877766677666655
No 267
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=84.88 E-value=0.22 Score=41.09 Aligned_cols=49 Identities=31% Similarity=0.496 Sum_probs=33.1
Q ss_pred CCccccccccccccC-ceec-CCCccccHHHHHHHHhcC--CCCCCCCCCcCC
Q 005598 98 PSDFCCPLSLELMTD-PVIV-ASGQTYERAFIKKWIDLG--LFVCPKTRQTLA 146 (689)
Q Consensus 98 p~~f~CpI~~~lm~d-PV~~-~~G~ty~r~~I~~~l~~~--~~~cP~t~~~l~ 146 (689)
|-+-.||-|.-.=.| |.++ -|-|.|-+.||.+|+... ...||.||+...
T Consensus 29 ~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 29 PFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred ccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 444455555432222 4444 689999999999999753 345999998754
No 268
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=84.78 E-value=0.69 Score=38.57 Aligned_cols=44 Identities=34% Similarity=0.567 Sum_probs=31.9
Q ss_pred cccccccccc----Ccee-cCCCccccHHHHHHHHhcCCCCCCCCCCcCC
Q 005598 102 CCPLSLELMT----DPVI-VASGQTYERAFIKKWIDLGLFVCPKTRQTLA 146 (689)
Q Consensus 102 ~CpI~~~lm~----dPV~-~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~ 146 (689)
+||=|+-=|. =||+ --|.|.|--.||.+||... ..||.++++..
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk-~~CPld~q~w~ 81 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTK-GVCPLDRQTWV 81 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhC-CCCCCCCceeE
Confidence 4555555441 1344 3699999999999999985 56999998754
No 269
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.81 E-value=89 Score=40.02 Aligned_cols=213 Identities=15% Similarity=0.131 Sum_probs=117.2
Q ss_pred hHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCcccHHHHHhc--CcHHHHHHhhcCCCHHHHHHHHHHHHHhh-cCCcc
Q 005598 404 TQVRKLVEDLKS-TSLDTQREATAELRLLAKHNMDNRMVIANC--GAINILVDMLHSSETKIQENAVTALLNLS-INDNN 479 (689)
Q Consensus 404 ~~V~~Lv~~L~s-~~~~~q~~Al~~L~~La~~s~~nr~~i~~~--g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs-~~~~~ 479 (689)
..|.....+-++ ..+..+.-|+.-+..++... +..+... -.||.|.+.-..++..|+. |+.-+++.- .+...
T Consensus 956 dLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a---~~kl~p~l~kLIPrLyRY~yDP~~~Vq~-aM~sIW~~Li~D~k~ 1031 (1702)
T KOG0915|consen 956 DLVYKFMQLANHNATWNSKKGAAFGFGAIAKQA---GEKLEPYLKKLIPRLYRYQYDPDKKVQD-AMTSIWNALITDSKK 1031 (1702)
T ss_pred HHHHHHHHHhhhhchhhcccchhhchHHHHHHH---HHhhhhHHHHhhHHHhhhccCCcHHHHH-HHHHHHHHhccChHH
Confidence 445555555443 24444556666666666533 2223221 3567776666667777765 566666643 33222
Q ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhh-CChHHHHHhhcCCCHHHHHH---HHHHHHhh
Q 005598 480 KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS-GAIGPLVDLLGNGTPRGKKD---AATALFNL 555 (689)
Q Consensus 480 k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~-g~I~~Lv~LL~~~~~~v~~~---Al~aL~nL 555 (689)
..--.-...++-|+.-|.+....+|+.++.+|..|....+.-...-.. ..+..+.+.+.+=...++++ ++.+|..|
T Consensus 1032 ~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl 1111 (1702)
T KOG0915|consen 1032 VVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKL 1111 (1702)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211222356777777777888999999999999997754332222111 45666666665444445554 45555555
Q ss_pred hh-----chHHHHHHHHhCcHHHHHH--hcCCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhcc
Q 005598 556 SI-----YHENKARIVQAGAVKHLVD--LMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL 620 (689)
Q Consensus 556 s~-----~~~n~~~lv~~G~v~~Lv~--LL~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s 620 (689)
+. .+..+..-+-..++|.|++ +++.-.++...+++++.-|+.+....-.-.-...++.|+.....
T Consensus 1112 ~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~ 1183 (1702)
T KOG0915|consen 1112 CVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSE 1183 (1702)
T ss_pred HhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccc
Confidence 54 1222233333445555544 23445677888999999998865542111112234555555433
No 270
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=83.79 E-value=2.3 Score=28.84 Aligned_cols=29 Identities=21% Similarity=0.377 Sum_probs=25.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhhC
Q 005598 611 IPVLVEVVELGSARGKENAAAALLQLCTN 639 (689)
Q Consensus 611 v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~ 639 (689)
+|.+++++.+.++.+|..|+.+|..++..
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999998864
No 271
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=83.63 E-value=1.9 Score=29.25 Aligned_cols=29 Identities=17% Similarity=0.360 Sum_probs=25.1
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 005598 447 AINILVDMLHSSETKIQENAVTALLNLSI 475 (689)
Q Consensus 447 ~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~ 475 (689)
.+|.|++++++++++|+..|+.+|..++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 37889999999999999999999998863
No 272
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=83.38 E-value=19 Score=43.17 Aligned_cols=263 Identities=14% Similarity=0.093 Sum_probs=130.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhcc-CcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhh-cCCccHHH
Q 005598 405 QVRKLVEDLKSTSLDTQREATAELRLLAKH-NMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS-INDNNKSA 482 (689)
Q Consensus 405 ~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~-s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs-~~~~~k~~ 482 (689)
.++.....++....+.+..++.....++.. +...+..+.....+|.+-.+..+.+..++...+..+..++ ..+ +..
T Consensus 356 ~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~ 433 (759)
T KOG0211|consen 356 LVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP--KER 433 (759)
T ss_pred chhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC--cCc
Confidence 455566666666556565555555555442 2223344444455677767776666666655555554442 111 000
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhccc-CchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHH
Q 005598 483 IANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN 561 (689)
Q Consensus 483 i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~-~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n 561 (689)
.-.-.++.++..++...+.++.+....+..+-. .+.........-.++.++.+-.....+++.+.+..+..++....
T Consensus 434 -ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~- 511 (759)
T KOG0211|consen 434 -TISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG- 511 (759)
T ss_pred -CccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh-
Confidence 012355666677777778888887766655433 22233334445567777777666677788887777777766433
Q ss_pred HHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCC
Q 005598 562 KARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 640 (689)
Q Consensus 562 ~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~ 640 (689)
..+.+.-..+.+...+ +....+.+.|...|..++..-. .+. .....++.++.+...++...+...+..+..++.-.
T Consensus 512 -~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w-~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~ 588 (759)
T KOG0211|consen 512 -VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEW-ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVL 588 (759)
T ss_pred -hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cch-hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHh
Confidence 2333333333333333 2334555666666665554111 111 11122344444443333333333333333222211
Q ss_pred HhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHH
Q 005598 641 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 677 (689)
Q Consensus 641 ~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~ 677 (689)
. ..+.....++.+..+.....+.+|-+++..|..
T Consensus 589 g---~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~ 622 (759)
T KOG0211|consen 589 G---QEITCEDLLPVFLDLVKDPVANVRINVAKHLPK 622 (759)
T ss_pred c---cHHHHHHHhHHHHHhccCCchhhhhhHHHHHHH
Confidence 1 222233345555555555555555555544443
No 273
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=83.32 E-value=6.2 Score=32.87 Aligned_cols=66 Identities=11% Similarity=0.119 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHhhCCHhhHHHHHhCC
Q 005598 585 VDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAALLQLCTNSSRFCSMVLQEG 651 (689)
Q Consensus 585 ~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s-~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g 651 (689)
...|++++++++..+.+.+.+.+.++++.++++... ....+|-.|..+|.-+++... .++.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~-G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEE-GAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHH-HHHHHHHcC
Confidence 467999999999999999999989999999999975 567788888888877776544 555554444
No 274
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=83.18 E-value=37 Score=37.44 Aligned_cols=82 Identities=16% Similarity=0.137 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCC-----CHHHHHHHHHHHHHhh-cCCccHHH-HHHcCCH
Q 005598 417 SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-----ETKIQENAVTALLNLS-INDNNKSA-IANANAI 489 (689)
Q Consensus 417 ~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~-----~~~v~~~Al~aL~nLs-~~~~~k~~-i~~~g~l 489 (689)
+.++...++++|.++...++..|..+.+...+..++.++... ...+...-+..|.-|. .....|.. +++.+++
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl 189 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL 189 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 446778999999999999999999988887777666665331 1234445555665553 34455554 5567999
Q ss_pred HHHHHHHcC
Q 005598 490 EPLIHVLQT 498 (689)
Q Consensus 490 ~~Lv~lL~s 498 (689)
+.+...|..
T Consensus 190 ~~lt~~led 198 (532)
T KOG4464|consen 190 ELLTNWLED 198 (532)
T ss_pred HHHHHHhhc
Confidence 999988864
No 275
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=83.01 E-value=11 Score=38.12 Aligned_cols=144 Identities=16% Similarity=0.132 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcC-----CCHHHHHHHHHHHHHhhcCCc--cHHHHHHcCCHHHHH
Q 005598 421 QREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-----SETKIQENAVTALLNLSINDN--NKSAIANANAIEPLI 493 (689)
Q Consensus 421 q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s-----~~~~v~~~Al~aL~nLs~~~~--~k~~i~~~g~l~~Lv 493 (689)
...|+..|.-++. .++.+..+.++.+--.|-.+|.. ..+-++..++.+++.|..++. ....+..-..+|.++
T Consensus 117 vcnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 117 VCNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 3567777777877 56888888877554444555532 234577888999998876543 344455668999999
Q ss_pred HHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhh--------CChHHHHH-hhcCCCHHHHHHHHHHHHhhhhchHHHHH
Q 005598 494 HVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS--------GAIGPLVD-LLGNGTPRGKKDAATALFNLSIYHENKAR 564 (689)
Q Consensus 494 ~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~--------g~I~~Lv~-LL~~~~~~v~~~Al~aL~nLs~~~~n~~~ 564 (689)
+++..++.-.+..|+.++..+..++..-..|+.. .++..++. +...+..+..+.++++-..|+..+..|..
T Consensus 196 rIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~l 275 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARAL 275 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHH
Confidence 9999999888888888887777766654444331 22333332 23456778888888888888887776654
Q ss_pred H
Q 005598 565 I 565 (689)
Q Consensus 565 l 565 (689)
+
T Consensus 276 L 276 (315)
T COG5209 276 L 276 (315)
T ss_pred H
Confidence 3
No 276
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=82.61 E-value=40 Score=37.68 Aligned_cols=128 Identities=18% Similarity=0.229 Sum_probs=80.9
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHhhhhc-hH--------HHHHHHHh----CcHHHHHHhc-CCChHHHHHHHHHHHH
Q 005598 529 AIGPLVDLLGNGTPRGKKDAATALFNLSIY-HE--------NKARIVQA----GAVKHLVDLM-DPAAGMVDKAVAVLAN 594 (689)
Q Consensus 529 ~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~-~~--------n~~~lv~~----G~v~~Lv~LL-~~~~~v~e~Al~~L~n 594 (689)
.+..|+.+|.+ +.+...++.++.-|..+ ++ +...+.+. -++|.|++-. ..+.......+.+|.+
T Consensus 272 ~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ 349 (415)
T PF12460_consen 272 LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSH 349 (415)
T ss_pred HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHH
Confidence 45667777776 55566666666666554 22 22333343 3556666665 3344467788889999
Q ss_pred HhCCchhHHHHHh-cCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHh
Q 005598 595 LATIPDGRVAIGQ-ENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVAL 659 (689)
Q Consensus 595 La~~~e~r~~i~~-~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~L 659 (689)
|..+-.....+-+ ...+|.|++-|...+..++..+..+|..+....++....=+ ...|+.|+.+
T Consensus 350 ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl-~sLI~~LL~l 414 (415)
T PF12460_consen 350 LLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHL-SSLIPRLLKL 414 (415)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHH-HHHHHHHHhc
Confidence 8885443333333 24689999999889999999999999999988764333211 1345555543
No 277
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=82.58 E-value=26 Score=41.30 Aligned_cols=132 Identities=21% Similarity=0.213 Sum_probs=83.3
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHH-HcCCCHHHHHHHHHHHHhcccCchhHHHH
Q 005598 446 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHV-LQTGSPEARENAAATLFSLSVIEDNKIKI 524 (689)
Q Consensus 446 g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~l-L~s~~~~~~~~Aa~aL~nLs~~~~~k~~I 524 (689)
++=+.+-.++...++-++...+..+..-=... ...+++..|+.+ .++.+.++|..|+-+|.-++..+.
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GT------gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp----- 587 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLALAYVGT------GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP----- 587 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHHHHhcc------CchhhHHHhhcccccccchHHHHHHHHHheeeEecCh-----
Confidence 34444555666677777776665553210111 123566777776 667889999999999988765433
Q ss_pred HhhCChHHHHHhhcCC-CHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC
Q 005598 525 GRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT 597 (689)
Q Consensus 525 ~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~ 597 (689)
..++..|.+|... ++.++.-++.+|.--|....++.. +..|-.+. ++..-++..|+-+++.+..
T Consensus 588 ---~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eA------i~lLepl~~D~~~fVRQgAlIa~amIm~ 653 (929)
T KOG2062|consen 588 ---EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEA------INLLEPLTSDPVDFVRQGALIALAMIMI 653 (929)
T ss_pred ---hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHH------HHHHhhhhcChHHHHHHHHHHHHHHHHH
Confidence 4567778888754 788999999999887776555543 22222233 4444556677777776543
No 278
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=82.38 E-value=65 Score=38.18 Aligned_cols=151 Identities=17% Similarity=0.144 Sum_probs=86.6
Q ss_pred HHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHh-hcCCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcHH
Q 005598 494 HVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDL-LGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVK 572 (689)
Q Consensus 494 ~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~L-L~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~ 572 (689)
+++.+.++-+|...+.++..- .. --++.++|..|+++ +.+.+.+++++|+.+|.-++..+.. .++
T Consensus 526 el~~dkdpilR~~Gm~t~alA-y~-----GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~--------~~~ 591 (929)
T KOG2062|consen 526 ELLRDKDPILRYGGMYTLALA-YV-----GTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE--------QLP 591 (929)
T ss_pred HHhcCCchhhhhhhHHHHHHH-Hh-----ccCchhhHHHhhcccccccchHHHHHHHHHheeeEecChh--------hch
Confidence 455555565655554443321 00 01133667777777 5567899999999999877663332 345
Q ss_pred HHHHhc-C-CChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHH-hhCCHhhHHHHHh
Q 005598 573 HLVDLM-D-PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQL-CTNSSRFCSMVLQ 649 (689)
Q Consensus 573 ~Lv~LL-~-~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L-~~~~~~~~~~lv~ 649 (689)
..+.+| + -+..++-.++-+|...|.....++++ ..|-.++.....-++..|+-++..+ +..++..+..+
T Consensus 592 s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi------~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv-- 663 (929)
T KOG2062|consen 592 STVSLLSESYNPHVRYGAAMALGIACAGTGLKEAI------NLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKV-- 663 (929)
T ss_pred HHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHH------HHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchH--
Confidence 667777 2 34556666777777777655444443 3444444556677888888777664 33344333322
Q ss_pred CCChHHHHHhhhcCCHH
Q 005598 650 EGAVPPLVALSQSGTPR 666 (689)
Q Consensus 650 ~g~i~~L~~LL~~~~~~ 666 (689)
.+....|.+++....+.
T Consensus 664 ~~frk~l~kvI~dKhEd 680 (929)
T KOG2062|consen 664 NGFRKQLEKVINDKHED 680 (929)
T ss_pred HHHHHHHHHHhhhhhhH
Confidence 23444555566555543
No 279
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=82.22 E-value=2.2 Score=47.42 Aligned_cols=176 Identities=17% Similarity=0.103 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHhhcCCccHHHH-HHcCCHHHHHHHHcCCCHHHHHHHHHHHHhccc-----Cch---hHHHHHhhCChHH
Q 005598 462 IQENAVTALLNLSINDNNKSAI-ANANAIEPLIHVLQTGSPEARENAAATLFSLSV-----IED---NKIKIGRSGAIGP 532 (689)
Q Consensus 462 v~~~Al~aL~nLs~~~~~k~~i-~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~-----~~~---~k~~I~~~g~I~~ 532 (689)
+...|++++..+..++..+... .-.++...++..|.+.....|+.+++++.|++. .+. ..+.+.. -.+..
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~ 485 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLK 485 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHH
Confidence 4556666766666666554432 334566777777777777889999999999864 111 1222211 11222
Q ss_pred HHHhhc---CCCHHHHHHHHHHHHhhhhchHHH----HHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhH-
Q 005598 533 LVDLLG---NGTPRGKKDAATALFNLSIYHENK----ARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGR- 602 (689)
Q Consensus 533 Lv~LL~---~~~~~v~~~Al~aL~nLs~~~~n~----~~lv~~G~v~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~r- 602 (689)
++.+-. -...+++.+|..+|.|+...-... ......|.+..++.-. ...-.+.-+|+.+++||-.++.-.
T Consensus 486 ~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~l 565 (728)
T KOG4535|consen 486 MLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPL 565 (728)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccc
Confidence 222221 235788889999999987632211 1122233333333322 345577889999999999876542
Q ss_pred HHH-HhcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHhh
Q 005598 603 VAI-GQENGIPVLVEVVEL-GSARGKENAAAALLQLCT 638 (689)
Q Consensus 603 ~~i-~~~g~v~~Lv~lL~s-~s~~~~e~Av~aL~~L~~ 638 (689)
+.. ....+.+.|..++.. .+-+++.+|+.+|..-..
T Consensus 566 q~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 566 QTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred cCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 111 112246777777754 577888888888876554
No 280
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=82.19 E-value=2 Score=47.61 Aligned_cols=173 Identities=18% Similarity=0.103 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhcccCchhHHHH-HhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhc-----hH---HHHHHHHhCcHHH
Q 005598 503 ARENAAATLFSLSVIEDNKIKI-GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-----HE---NKARIVQAGAVKH 573 (689)
Q Consensus 503 ~~~~Aa~aL~nLs~~~~~k~~I-~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~-----~~---n~~~lv~~G~v~~ 573 (689)
++..|.+++.-+..++..+... ....+...++..|.+..-..+..+++++.|++.. +. ...++.. -.+..
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~ 485 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLK 485 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHH
Confidence 4444555554444455544432 2335556666666666677888899999988651 11 1122222 12222
Q ss_pred HHHhc----CCChHHHHHHHHHHHHHhCCchhH-----HHHHhcCcHHHH-HHHhccCCHHHHHHHHHHHHHHhhCCHh-
Q 005598 574 LVDLM----DPAAGMVDKAVAVLANLATIPDGR-----VAIGQENGIPVL-VEVVELGSARGKENAAAALLQLCTNSSR- 642 (689)
Q Consensus 574 Lv~LL----~~~~~v~e~Al~~L~nLa~~~e~r-----~~i~~~g~v~~L-v~lL~s~s~~~~e~Av~aL~~L~~~~~~- 642 (689)
++..- ..+..+...|+.+|.|+...-... .++. .+.+..+ -.....+.-.++-+|+.+|.||.++..-
T Consensus 486 ~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~-~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~ 564 (728)
T KOG4535|consen 486 MLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEII-EESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALP 564 (728)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHH-HHHHHhcccceecccccccchHHHHHHHHhhcCcccc
Confidence 22221 234567788999999986532211 1111 2222222 2222346778999999999999987641
Q ss_pred hHHHHHhCCChHHHHHhhhcC-CHHHHHHHHHHHHH
Q 005598 643 FCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLSY 677 (689)
Q Consensus 643 ~~~~lv~~g~i~~L~~LL~~~-~~~vr~~A~~lL~~ 677 (689)
.+..-+-.-+++.|+.|+... +-++|-.|+.+|..
T Consensus 565 lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~v 600 (728)
T KOG4535|consen 565 LQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSV 600 (728)
T ss_pred ccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcC
Confidence 223333345688888887765 45777777776643
No 281
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.19 E-value=0.87 Score=48.67 Aligned_cols=47 Identities=19% Similarity=0.224 Sum_probs=37.7
Q ss_pred ccccccccccccCceecCCCcc-ccHHHHHHHHhcCCCCCCCCCCcCCC
Q 005598 100 DFCCPLSLELMTDPVIVASGQT-YERAFIKKWIDLGLFVCPKTRQTLAH 147 (689)
Q Consensus 100 ~f~CpI~~~lm~dPV~~~~G~t-y~r~~I~~~l~~~~~~cP~t~~~l~~ 147 (689)
.-.|=||+.=-+|=|++||-|. .|..|-+.--- ....||+||+++..
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~-q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLRY-QTNNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHHH-hhcCCCccccchHh
Confidence 4689999999999999999998 79998665432 22449999998754
No 282
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=82.18 E-value=11 Score=38.06 Aligned_cols=145 Identities=14% Similarity=0.080 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHc---CC--CHHHHHHHHHHHHhcccCchh--HHHHHhhCChHHHH
Q 005598 462 IQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQ---TG--SPEARENAAATLFSLSVIEDN--KIKIGRSGAIGPLV 534 (689)
Q Consensus 462 v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~---s~--~~~~~~~Aa~aL~nLs~~~~~--k~~I~~~g~I~~Lv 534 (689)
-..+|+.+|.-++.+++.|..+.++-.---|..+|. +. -..+|..++++|..|..+++. -..+....++|.++
T Consensus 116 RvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 116 RVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 345667777667788898888887643333334443 22 256899999999999886543 33344568999999
Q ss_pred HhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHH----hC----cHHHHHHhc-C-CChHHHHHHHHHHHHHhCCchhHHH
Q 005598 535 DLLGNGTPRGKKDAATALFNLSIYHENKARIVQ----AG----AVKHLVDLM-D-PAAGMVDKAVAVLANLATIPDGRVA 604 (689)
Q Consensus 535 ~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~----~G----~v~~Lv~LL-~-~~~~v~e~Al~~L~nLa~~~e~r~~ 604 (689)
+++..++.-.+..|+.++..+..++.+-+.+.+ -- ++..++.-+ + ....+...++.+--.|+..+..|..
T Consensus 196 rIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~l 275 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARAL 275 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHH
Confidence 999999888888888777776666654433322 12 222222222 2 3456677888888888888887776
Q ss_pred HH
Q 005598 605 IG 606 (689)
Q Consensus 605 i~ 606 (689)
+.
T Consensus 276 L~ 277 (315)
T COG5209 276 LS 277 (315)
T ss_pred Hh
Confidence 64
No 283
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=81.50 E-value=99 Score=35.70 Aligned_cols=106 Identities=18% Similarity=0.103 Sum_probs=60.9
Q ss_pred HHHHHHHHhcCCC----HHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccH
Q 005598 405 QVRKLVEDLKSTS----LDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNK 480 (689)
Q Consensus 405 ~V~~Lv~~L~s~~----~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k 480 (689)
..-.|++.+.+.. ......-++.+..|.+.++..+..+ .|.|-.-|.+....|..+++.++..++...-.-
T Consensus 224 a~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~-----rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~ 298 (898)
T COG5240 224 AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQL-----RPFLNSWLSDKFEMVFLEAARAVCALSEENVGS 298 (898)
T ss_pred HHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHH-----HHHHHHHhcCcchhhhHHHHHHHHHHHHhccCH
Confidence 3445666665432 1111223344455555444333332 345555555556778888888888876322111
Q ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccC
Q 005598 481 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI 517 (689)
Q Consensus 481 ~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~ 517 (689)
.++ ...+..|-.+|++.....|-.|+++|..|+..
T Consensus 299 -~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~ 333 (898)
T COG5240 299 -QFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMK 333 (898)
T ss_pred -HHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhh
Confidence 111 13455666778888888999999999998863
No 284
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.30 E-value=0.68 Score=49.55 Aligned_cols=49 Identities=22% Similarity=0.387 Sum_probs=41.9
Q ss_pred ccccccccccccC---ceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCC
Q 005598 100 DFCCPLSLELMTD---PVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT 148 (689)
Q Consensus 100 ~f~CpI~~~lm~d---PV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~ 148 (689)
.+.|.|++++|.| |++.|.|++|-...|+.|=..++-.||.++..+...
T Consensus 330 ~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~ 381 (389)
T KOG0396|consen 330 RLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYS 381 (389)
T ss_pred HHHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccHH
Confidence 3789999999986 999999999999999999776657799998877553
No 285
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=81.21 E-value=60 Score=35.06 Aligned_cols=157 Identities=15% Similarity=0.109 Sum_probs=110.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-cCcccHHHHHh-cCc-HHHHHHhhcCC-----C--------HHHHHHHH
Q 005598 404 TQVRKLVEDLKSTSLDTQREATAELRLLAK-HNMDNRMVIAN-CGA-INILVDMLHSS-----E--------TKIQENAV 467 (689)
Q Consensus 404 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~-~s~~nr~~i~~-~g~-I~~Lv~lL~s~-----~--------~~v~~~Al 467 (689)
..++.+-+.|.+.....+..+++.|..++. .+......+.. -+. .+.|..++... . +.++...+
T Consensus 56 ~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI 135 (330)
T PF11707_consen 56 NHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFI 135 (330)
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHH
Confidence 457788888888888888899999999887 55444444443 343 44566665321 1 16777777
Q ss_pred HHHHHhhc--CCccHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHh-cccCc----hhHHHHHhhCChHHHHHhhcC
Q 005598 468 TALLNLSI--NDNNKSAIAN-ANAIEPLIHVLQTGSPEARENAAATLFS-LSVIE----DNKIKIGRSGAIGPLVDLLGN 539 (689)
Q Consensus 468 ~aL~nLs~--~~~~k~~i~~-~g~l~~Lv~lL~s~~~~~~~~Aa~aL~n-Ls~~~----~~k~~I~~~g~I~~Lv~LL~~ 539 (689)
..+..+.. +...+..+.. .+.+..+.+-|...+.++....+.+|.. +..++ ..|..+....++..|+.+...
T Consensus 136 ~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~ 215 (330)
T PF11707_consen 136 RFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSR 215 (330)
T ss_pred HHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcc
Confidence 77666643 3445665555 4678889999988889999999988885 33332 346667778899999998876
Q ss_pred CCH----HHHHHHHHHHHhhhhchH
Q 005598 540 GTP----RGKKDAATALFNLSIYHE 560 (689)
Q Consensus 540 ~~~----~v~~~Al~aL~nLs~~~~ 560 (689)
... .+...+-..|..+|.++.
T Consensus 216 ~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 216 DGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred cCCcccchHHHHHHHHHHHHhcCCC
Confidence 655 788888888888887544
No 286
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=81.14 E-value=1 Score=40.00 Aligned_cols=58 Identities=19% Similarity=0.478 Sum_probs=34.8
Q ss_pred CCCCCCC-ccccccccccccCceecC-CC-----ccccHHHHHHHHhcCCCCCCCCCCcCCCCCCC
Q 005598 93 SPVPIPS-DFCCPLSLELMTDPVIVA-SG-----QTYERAFIKKWIDLGLFVCPKTRQTLAHTTLI 151 (689)
Q Consensus 93 ~~~~~p~-~f~CpI~~~lm~dPV~~~-~G-----~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~ 151 (689)
..+.-|+ .+.|||++++.+.-|.+. ++ .-||+.++.+-...|. .=|.+|+|++...++
T Consensus 32 ~~f~C~ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~~-~HPLSREpit~sMIv 96 (113)
T PF06416_consen 32 EEFQCPEEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREGA-PHPLSREPITPSMIV 96 (113)
T ss_dssp CCCTS-CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT----TTT-----TTTEE
T ss_pred hhccCCHHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcCC-CCCCccCCCChhhEe
Confidence 3444555 589999999999999763 22 2399999999998873 469999998876543
No 287
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=81.07 E-value=3.2 Score=42.43 Aligned_cols=81 Identities=26% Similarity=0.238 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhhhhchHHHHHHHHhC-------cHHHHHHhc--CCChHHHHHHHHHHHHHhCCchh--HHHHHhcCc
Q 005598 542 PRGKKDAATALFNLSIYHENKARIVQAG-------AVKHLVDLM--DPAAGMVDKAVAVLANLATIPDG--RVAIGQENG 610 (689)
Q Consensus 542 ~~v~~~Al~aL~nLs~~~~n~~~lv~~G-------~v~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~--r~~i~~~g~ 610 (689)
-.-++.|+.+|+.|+..+.|...++..+ .+..|+++| ..+.-..|-|+.+|.+||...+. |....+.+.
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 3568899999999999999887776644 555666666 34556678999999999996654 344457788
Q ss_pred HHHHHHHhccCC
Q 005598 611 IPVLVEVVELGS 622 (689)
Q Consensus 611 v~~Lv~lL~s~s 622 (689)
|..|+.++....
T Consensus 218 i~~Li~FiE~a~ 229 (257)
T PF12031_consen 218 ISHLIAFIEDAE 229 (257)
T ss_pred HHHHHHHHHHHH
Confidence 999999986543
No 288
>PF04641 Rtf2: Rtf2 RING-finger
Probab=80.90 E-value=1.7 Score=45.39 Aligned_cols=37 Identities=22% Similarity=0.349 Sum_probs=32.5
Q ss_pred CccccccccccccCceec-CCCccccHHHHHHHHhcCC
Q 005598 99 SDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGL 135 (689)
Q Consensus 99 ~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~l~~~~ 135 (689)
..++|+|+++.+.+||+. .-|+-|.+..|..||....
T Consensus 33 ~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~~ 70 (260)
T PF04641_consen 33 RWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDKK 70 (260)
T ss_pred CcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhcC
Confidence 357899999999999975 5799999999999998653
No 289
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.78 E-value=1.3 Score=46.98 Aligned_cols=52 Identities=21% Similarity=0.337 Sum_probs=41.9
Q ss_pred CceecCCCccccHHHHHHHHhcCCCCCCCCCCcC--C---CCCCCccHHHHHHHHHH
Q 005598 112 DPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTL--A---HTTLIPNYTVKALIANW 163 (689)
Q Consensus 112 dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l--~---~~~l~pn~~l~~~i~~~ 163 (689)
-|=++.||||+|..|+...+..+...||+||.+. . .+.|..|+.+...|+..
T Consensus 21 ~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 21 IPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 3556779999999999999988777799999983 2 24578888888888765
No 290
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=80.56 E-value=28 Score=41.61 Aligned_cols=191 Identities=16% Similarity=0.144 Sum_probs=111.6
Q ss_pred HHHHhhccCcccHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHH--HHHHHHcCCCH-H
Q 005598 427 ELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNNKSAIANANAIE--PLIHVLQTGSP-E 502 (689)
Q Consensus 427 ~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s-~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~--~Lv~lL~s~~~-~ 502 (689)
.|...+..++.+...+.+.|++..+...++. ....++..++..|.|++...+.+........+. .+-.++...+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 7788899999999999999999999999985 456788999999999986554444333222222 33335544444 7
Q ss_pred HHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHH-HHHhc--C
Q 005598 503 ARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKH-LVDLM--D 579 (689)
Q Consensus 503 ~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~-Lv~LL--~ 579 (689)
.-.+|+.+|+.+..+.+. ....+..+....++.. ++-.. .....++....-+.. +..++ .
T Consensus 574 rsY~~~siLa~ll~~~~~---~~~~~~r~~~~~~l~e-----------~i~~~---~~~~~~~~~~~~f~~~~~~il~~s 636 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEK---TTECVFRNSVNELLVE-----------AISRW---LTSEIRVINDRSFFPRILRILRLS 636 (699)
T ss_pred HHHHHHHHHHHHHhCCCc---CccccchHHHHHHHHH-----------Hhhcc---CccceeehhhhhcchhHHHHhccc
Confidence 788888888888654332 1122222222222211 11111 111111222222222 33344 3
Q ss_pred CChHHHHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHhcc-CCHHHHHHHHHHHH
Q 005598 580 PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAALL 634 (689)
Q Consensus 580 ~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~v~~Lv~lL~s-~s~~~~e~Av~aL~ 634 (689)
.....+-.|++++.++.. .++....+.+.++++.+..+-.. ....+++.+..++-
T Consensus 637 ~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 693 (699)
T KOG3665|consen 637 KSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIE 693 (699)
T ss_pred CCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhh
Confidence 445566788888888887 45566667777777777666432 23444444444443
No 291
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=80.30 E-value=16 Score=45.14 Aligned_cols=140 Identities=22% Similarity=0.190 Sum_probs=103.6
Q ss_pred hHHHHHHHHhc----CCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcC-C
Q 005598 404 TQVRKLVEDLK----STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH-SSETKIQENAVTALLNLSIN-D 477 (689)
Q Consensus 404 ~~V~~Lv~~L~----s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~-s~~~~v~~~Al~aL~nLs~~-~ 477 (689)
.+++.+++..+ .++|+.|..|.-+|..+..-+.+... ...|.|+..+. ++++.++.+++-+|+.|+.. +
T Consensus 919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fp 993 (1251)
T KOG0414|consen 919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP 993 (1251)
T ss_pred HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence 45566677664 46899999999999988765533222 35889999997 67899999999999988743 2
Q ss_pred ccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhh
Q 005598 478 NNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 557 (689)
Q Consensus 478 ~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~ 557 (689)
... .-.-+.|...|.+.++.+|..|.-+|.+|...+ .|--.|.+..+..+|.+++.++...|-.....|+.
T Consensus 994 nli-----e~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 994 NLI-----EPWTEHLYRRLRDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred ccc-----chhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 111 123455777888999999999999999986543 34346999999999999998888877755555544
No 292
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=79.75 E-value=95 Score=33.55 Aligned_cols=153 Identities=16% Similarity=0.186 Sum_probs=108.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhc-CC-ccHHHHHHc-C-CHHHHHHHHcCC-----C--------HHHHHHHHHH
Q 005598 448 INILVDMLHSSETKIQENAVTALLNLSI-ND-NNKSAIANA-N-AIEPLIHVLQTG-----S--------PEARENAAAT 510 (689)
Q Consensus 448 I~~Lv~lL~s~~~~v~~~Al~aL~nLs~-~~-~~k~~i~~~-g-~l~~Lv~lL~s~-----~--------~~~~~~Aa~a 510 (689)
++.+.+.|.+....+...++..|..+.. +. .....+... + .++.|.+++... . ..+|.+.+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6777888888888888899999999875 33 333344433 3 445566666321 1 2788888887
Q ss_pred HHhccc--CchhHHHHHhh-CChHHHHHhhcCCCHHHHHHHHHHHHh-hhhc----hHHHHHHHHhCcHHHHHHhc-CCC
Q 005598 511 LFSLSV--IEDNKIKIGRS-GAIGPLVDLLGNGTPRGKKDAATALFN-LSIY----HENKARIVQAGAVKHLVDLM-DPA 581 (689)
Q Consensus 511 L~nLs~--~~~~k~~I~~~-g~I~~Lv~LL~~~~~~v~~~Al~aL~n-Ls~~----~~n~~~lv~~G~v~~Lv~LL-~~~ 581 (689)
+.++.. +...+..+... +.+..+.+-|..+...+....+.+|.. +..+ ...|..+....++..|+.+. ..+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 777655 44456666554 889999999999889999999998884 4333 34566777888999999976 333
Q ss_pred h----HHHHHHHHHHHHHhCCch
Q 005598 582 A----GMVDKAVAVLANLATIPD 600 (689)
Q Consensus 582 ~----~v~e~Al~~L~nLa~~~e 600 (689)
. .+.+.+-..|..+|.++.
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCC
Confidence 3 678888899999987553
No 293
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=79.64 E-value=1e+02 Score=33.82 Aligned_cols=226 Identities=18% Similarity=0.161 Sum_probs=117.6
Q ss_pred HHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHcC-CCHHHHHHH-HHHHHhcccCchhHHHH
Q 005598 448 INILVDMLHS-SETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQT-GSPEARENA-AATLFSLSVIEDNKIKI 524 (689)
Q Consensus 448 I~~Lv~lL~s-~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~s-~~~~~~~~A-a~aL~nLs~~~~~k~~I 524 (689)
|..++.=|.+ ....++..++--|+.-+.++..+..+...|.++.+++.+.. ++..+...+ +.+++-++.+..+-..+
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~ 102 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLL 102 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhh
Confidence 4555555553 34567777777777778899999999999999999999854 444244444 44444445444444444
Q ss_pred HhhCChHHHHHhhcCC-CHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc----------CCChHHHHHHHHHHH
Q 005598 525 GRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM----------DPAAGMVDKAVAVLA 593 (689)
Q Consensus 525 ~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL----------~~~~~v~e~Al~~L~ 593 (689)
...+.+..++.++.-. ......... .....+-.++ ....+..+.+++ .........|+.+|.
T Consensus 103 ~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk~-~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le 175 (361)
T PF07814_consen 103 LDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSKV-QQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALE 175 (361)
T ss_pred hchhHHHHHHHHhccccccccccchh------hhhhhhhhHH-HHHHHHHHHHHHhccccccccCCcccccccHHHHHHH
Confidence 4446666667777711 000000000 0000011111 111222222222 011122344555555
Q ss_pred HHh-----------C-Cc---hhHHHHHhcCcHHHHHHHhcc----C------------CHHHHHHHHHHHHHHhhCCHh
Q 005598 594 NLA-----------T-IP---DGRVAIGQENGIPVLVEVVEL----G------------SARGKENAAAALLQLCTNSSR 642 (689)
Q Consensus 594 nLa-----------~-~~---e~r~~i~~~g~v~~Lv~lL~s----~------------s~~~~e~Av~aL~~L~~~~~~ 642 (689)
.++ . .. --++++.+.|++..++.++.. . +-..-+.+..+|-+.+..+..
T Consensus 176 ~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~ 255 (361)
T PF07814_consen 176 SLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEE 255 (361)
T ss_pred HHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCcc
Confidence 553 1 11 125677788889999888751 1 112345677888887777776
Q ss_pred hHHHHHhC--CChHHHHH-hhhcCCHHHHHHHHHHHHHhhc
Q 005598 643 FCSMVLQE--GAVPPLVA-LSQSGTPRAKEKAQALLSYFRN 680 (689)
Q Consensus 643 ~~~~lv~~--g~i~~L~~-LL~~~~~~vr~~A~~lL~~L~~ 680 (689)
++..++.. +.+..+.. ++..-.+.+...-..+|+++-+
T Consensus 256 nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllN 296 (361)
T PF07814_consen 256 NQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLN 296 (361)
T ss_pred chHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeee
Confidence 66666652 33333333 3333334555444444444433
No 294
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.42 E-value=0.9 Score=48.60 Aligned_cols=49 Identities=22% Similarity=0.259 Sum_probs=37.5
Q ss_pred CCCCCCccccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCC
Q 005598 94 PVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLA 146 (689)
Q Consensus 94 ~~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~ 146 (689)
....|-.-.|-||.+=.++-|.+||||+.| |+.-... ...||+||+.+.
T Consensus 299 ~~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 299 FRELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH--LPQCPVCRQRIR 347 (355)
T ss_pred ccccCCCCceEEecCCccceeeecCCcEEE--chHHHhh--CCCCchhHHHHH
Confidence 445667778999999999999999999998 5544432 244999998653
No 295
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=78.62 E-value=96 Score=33.21 Aligned_cols=198 Identities=14% Similarity=0.139 Sum_probs=131.8
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhc-C-cHHHHHHhhcC-C-CHHHHHHHHHHHHHhhcCCc
Q 005598 403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-G-AINILVDMLHS-S-ETKIQENAVTALLNLSINDN 478 (689)
Q Consensus 403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~-g-~I~~Lv~lL~s-~-~~~v~~~Al~aL~nLs~~~~ 478 (689)
.++...|+..+...+.+.+..++....++-+.....|...++. . -.+.+..++.. . .+++...+-..|.....++.
T Consensus 78 ~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEcirhe~ 157 (342)
T KOG1566|consen 78 ADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRECIRHEF 157 (342)
T ss_pred CCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHHhhHH
Confidence 3567888888888888888888888887776665555554442 1 12222223322 2 24444444444444445555
Q ss_pred cHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCc-hhHHHHHhh---CC-hHHHHHhhcCCCHHHHHHHHHHHH
Q 005598 479 NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE-DNKIKIGRS---GA-IGPLVDLLGNGTPRGKKDAATALF 553 (689)
Q Consensus 479 ~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~-~~k~~I~~~---g~-I~~Lv~LL~~~~~~v~~~Al~aL~ 553 (689)
..+.+..+..+.......+.+.-++..-|..+...+.... .....+... .. .+.--.++++++--+++.++.+|.
T Consensus 158 LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg 237 (342)
T KOG1566|consen 158 LAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLG 237 (342)
T ss_pred HHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHH
Confidence 5666777778888888887777777777777777764422 222233222 23 333677788999999999999999
Q ss_pred hhhhchHHHHHHHH----hCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCch
Q 005598 554 NLSIYHENKARIVQ----AGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPD 600 (689)
Q Consensus 554 nLs~~~~n~~~lv~----~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e 600 (689)
.+-....|...|.. ...+..++.+| ++...++-.|..+......++.
T Consensus 238 ~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn 289 (342)
T KOG1566|consen 238 ELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN 289 (342)
T ss_pred HHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence 99887777655543 57888999999 6778888899999888877554
No 296
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=78.32 E-value=46 Score=40.09 Aligned_cols=157 Identities=18% Similarity=0.206 Sum_probs=99.0
Q ss_pred cCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc--CCccHHHHHHcCCHHH
Q 005598 414 KSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI--NDNNKSAIANANAIEP 491 (689)
Q Consensus 414 ~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~--~~~~k~~i~~~g~l~~ 491 (689)
+...+.++..++..+.++++.-+. .....+.++.+..++..+...|++.|+..+.++.. +... =......+.
T Consensus 247 ~d~~~~Vr~~~a~~l~~~a~~~~~---~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~---d~~~~~~~~ 320 (759)
T KOG0211|consen 247 QDDTPMVRRAVASNLGNIAKVLES---EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD---DVVKSLTES 320 (759)
T ss_pred cccchhhHHHHHhhhHHHHHHHHH---HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch---hhhhhhhHH
Confidence 345677778888888888774322 55566889999999988777888888888877742 1111 122356778
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhh--chHHHHHHHHhC
Q 005598 492 LIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI--YHENKARIVQAG 569 (689)
Q Consensus 492 Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~--~~~n~~~lv~~G 569 (689)
++...+.++..++...+.....|...-.. ......-+++...++++...+.+.+++.-...++. +.+....+....
T Consensus 321 l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ 398 (759)
T KOG0211|consen 321 LVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSS 398 (759)
T ss_pred HHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhh
Confidence 88888888888888888877777532111 22222446667777776666666655554444444 222333444444
Q ss_pred cHHHHHHhc
Q 005598 570 AVKHLVDLM 578 (689)
Q Consensus 570 ~v~~Lv~LL 578 (689)
+++.+-.++
T Consensus 399 ilp~~~~lv 407 (759)
T KOG0211|consen 399 ILPEVQVLV 407 (759)
T ss_pred hhHHHHHHH
Confidence 555555555
No 297
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=78.00 E-value=13 Score=34.50 Aligned_cols=72 Identities=22% Similarity=0.237 Sum_probs=60.6
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcc-cHHHHHhcCcHHHHHHhhcC---CCHHHHHHHHHHHHHhh
Q 005598 403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMD-NRMVIANCGAINILVDMLHS---SETKIQENAVTALLNLS 474 (689)
Q Consensus 403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~-nr~~i~~~g~I~~Lv~lL~s---~~~~v~~~Al~aL~nLs 474 (689)
+..++.|-+.|+++++.+|..|+..|-.+.+.... ....+....++..|+.++.. .+..|+..++..|...+
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999886544 56667666888889999865 47889999999998886
No 298
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=77.86 E-value=11 Score=35.67 Aligned_cols=72 Identities=15% Similarity=0.150 Sum_probs=61.0
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-cccHHHHHhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHhh
Q 005598 403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHN-MDNRMVIANCGAINILVDMLH-SSETKIQENAVTALLNLS 474 (689)
Q Consensus 403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s-~~nr~~i~~~g~I~~Lv~lL~-s~~~~v~~~Al~aL~nLs 474 (689)
...++.|.+.|+++++.+|..|+..|-.+.+.. ......+...+++..|+.++. ..+..|+..++.++...+
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999998863 445666777899999999986 457889999999998876
No 299
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=77.60 E-value=16 Score=35.04 Aligned_cols=140 Identities=16% Similarity=0.166 Sum_probs=81.9
Q ss_pred hHHHHHhhcC--CCHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHH-hc-CCChHHHHHHHHHHHHHhCC-chh-HH
Q 005598 530 IGPLVDLLGN--GTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVD-LM-DPAAGMVDKAVAVLANLATI-PDG-RV 603 (689)
Q Consensus 530 I~~Lv~LL~~--~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~-LL-~~~~~v~e~Al~~L~nLa~~-~e~-r~ 603 (689)
++.++..|.. ....++..++.++..+- +..+..+. ..+...+. ++ +.+.+-.-.++.++..|-.. ++. ..
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~--~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFK--EKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHH--HHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHH--HHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 4445555543 35677777777777662 22222221 12222222 23 22233455677777776653 333 34
Q ss_pred HHHhcCcHHHHHHHhc--cCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcC-CHH-HHHHHHHHH
Q 005598 604 AIGQENGIPVLVEVVE--LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG-TPR-AKEKAQALL 675 (689)
Q Consensus 604 ~i~~~g~v~~Lv~lL~--s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~-~~~-vr~~A~~lL 675 (689)
.+...|.++.++.++. ..+...+..++.+|..-|.. . .+...+...+++.|..+...+ ++. +|-.|+-.|
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d-~-~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID-K-SCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGL 154 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS-H-HHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc-H-HHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHH
Confidence 4457888999999998 67778888888877765654 3 344444557899999999654 455 666555443
No 300
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=77.53 E-value=39 Score=39.68 Aligned_cols=252 Identities=12% Similarity=0.101 Sum_probs=139.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHHc
Q 005598 407 RKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANA 486 (689)
Q Consensus 407 ~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~ 486 (689)
-..++.++..+.+.+..--..|..- -+..-..+...-.++.|+..+...+ .....+..|..+...-+... ...
T Consensus 257 ~~fLeel~lks~~eK~~Ff~~L~~~---l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~e--yq~ 329 (690)
T KOG1243|consen 257 LLFLEELRLKSVEEKQKFFSGLIDR---LDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEE--YQV 329 (690)
T ss_pred HHHHHhcccCcHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccc--ccc
Confidence 3344555555555454433333331 1122333445566777777665544 11222333333332211111 566
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHH
Q 005598 487 NAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIV 566 (689)
Q Consensus 487 g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv 566 (689)
+.++.|+++++..+..+|..-+.-+-... +.....+.+.-+++.+..-+.+.++.++..++.++..|+..=.-+ .+
T Consensus 330 ~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i--~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~L 405 (690)
T KOG1243|consen 330 RIIPVLLKLFKSPDRQIRLLLLQYIEKYI--DHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--NL 405 (690)
T ss_pred chhhhHHHHhcCcchHHHHHHHHhHHHHh--hhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--hh
Confidence 89999999999998888765443332221 223345667788999999999999999999999988886621111 22
Q ss_pred HhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhcCc-HHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhH
Q 005598 567 QAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENG-IPVLVEVVELGSARGKENAAAALLQLCTNSSRFC 644 (689)
Q Consensus 567 ~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~-v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~ 644 (689)
....+..+-.+- ++...+.....-+|..++.+-.. ..+.++ +..+..-+++.-...+..++.+|+..+..-+.
T Consensus 406 n~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~---~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~-- 480 (690)
T KOG1243|consen 406 NGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAA---SVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQ-- 480 (690)
T ss_pred cHHHHHHHHhhCccccCcccccceeeecccccccch---hhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccch--
Confidence 233333333333 44555666665566665553221 123333 34555556666666777788888777665441
Q ss_pred HHHHhCCChHHHHHhhhcCCHHHHHHHHHHH
Q 005598 645 SMVLQEGAVPPLVALSQSGTPRAKEKAQALL 675 (689)
Q Consensus 645 ~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL 675 (689)
.=+...+++.|.-+.-....-++..|-..+
T Consensus 481 -~~va~kIlp~l~pl~vd~e~~vr~~a~~~i 510 (690)
T KOG1243|consen 481 -SEVANKILPSLVPLTVDPEKTVRDTAEKAI 510 (690)
T ss_pred -hhhhhhccccccccccCcccchhhHHHHHH
Confidence 112234566666666666555665555533
No 301
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=76.62 E-value=94 Score=31.80 Aligned_cols=131 Identities=18% Similarity=0.097 Sum_probs=79.0
Q ss_pred HhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHH
Q 005598 412 DLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEP 491 (689)
Q Consensus 412 ~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~ 491 (689)
.-+..++..+...+..|..++.+...+.. -++..|..+...+.......+...+..+... +.+.. +.+..
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~-~~r~f----~~L~~ 78 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKA-NDRHF----PFLQP 78 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHh-CchHH----HHHHH
Confidence 33457888899999999999986512222 2455666666666666555555666555322 11111 34444
Q ss_pred HHHH--Hc------C--CCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhh-cCCCHHHHHHHHHHHHhhh
Q 005598 492 LIHV--LQ------T--GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLL-GNGTPRGKKDAATALFNLS 556 (689)
Q Consensus 492 Lv~l--L~------s--~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL-~~~~~~v~~~Al~aL~nLs 556 (689)
++.. ++ . ...+.....+.++..++....+ .....++.+..+| ++.+..++..++.+|..||
T Consensus 79 ~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 79 LLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred HHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 4433 11 1 1244555556677777654333 1224677788888 6778888899999999998
No 302
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=76.61 E-value=8.2 Score=39.56 Aligned_cols=86 Identities=17% Similarity=0.183 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHhcCc-------HHHHHHHhc-cCCHHHHHHHHHHHHHHhhCCHhhHHHH-HhCCChH
Q 005598 584 MVDKAVAVLANLATIPDGRVAIGQENG-------IPVLVEVVE-LGSARGKENAAAALLQLCTNSSRFCSMV-LQEGAVP 654 (689)
Q Consensus 584 v~e~Al~~L~nLa~~~e~r~~i~~~g~-------v~~Lv~lL~-s~s~~~~e~Av~aL~~L~~~~~~~~~~l-v~~g~i~ 654 (689)
-...|+.+|+.|+..+.+...+...+- +..|+++|. +++.-.+|.|+.+|.+||..+...+..+ .+.+.|.
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~ 219 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCIS 219 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHH
Confidence 467899999999998888877776554 344444453 4688899999999999999998776554 4678999
Q ss_pred HHHHhhhcCCHHHHH
Q 005598 655 PLVALSQSGTPRAKE 669 (689)
Q Consensus 655 ~L~~LL~~~~~~vr~ 669 (689)
.|+..+......+..
T Consensus 220 ~Li~FiE~a~~~~~~ 234 (257)
T PF12031_consen 220 HLIAFIEDAEQNAHQ 234 (257)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999877544433
No 303
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=76.39 E-value=1.2e+02 Score=34.23 Aligned_cols=185 Identities=14% Similarity=0.133 Sum_probs=97.7
Q ss_pred hhHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccC-cccHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCcc
Q 005598 403 ETQVRKLVEDLKST-SLDTQREATAELRLLAKHN-MDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNN 479 (689)
Q Consensus 403 ~~~V~~Lv~~L~s~-~~~~q~~Al~~L~~La~~s-~~nr~~i~~~g~I~~Lv~lL~s-~~~~v~~~Al~aL~nLs~~~~~ 479 (689)
...|..++..++.. ..+.+..|+..|..+...+ ...+..... ..+..++..|.. .+...+..|+++|..++.+...
T Consensus 285 ~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~-~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~ 363 (516)
T KOG2956|consen 285 SALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFA-EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA 363 (516)
T ss_pred hHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHH-HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH
Confidence 35777788888754 5666778888777665543 222332211 245566777766 6777889999999998754332
Q ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHH-HHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhc
Q 005598 480 KSAIANANAIEPLIHVLQTGSPEARENAAAT-LFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY 558 (689)
Q Consensus 480 k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~a-L~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~ 558 (689)
+-.=...-++..++..-++...++...|... +..++.....+ .|..+..++...+...-..++..+..|+..
T Consensus 364 ~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~-------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~ 436 (516)
T KOG2956|consen 364 RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ-------CIVNISPLILTADEPRAVAVIKMLTKLFER 436 (516)
T ss_pred hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh-------HHHHHhhHHhcCcchHHHHHHHHHHHHHhh
Confidence 2111111234444444445555554444443 33333332222 233344444444444444444444444331
Q ss_pred hHHHHHH--HHhCcHHHHHHhcC-CChHHHHHHHHHHHHHh
Q 005598 559 HENKARI--VQAGAVKHLVDLMD-PAAGMVDKAVAVLANLA 596 (689)
Q Consensus 559 ~~n~~~l--v~~G~v~~Lv~LL~-~~~~v~e~Al~~L~nLa 596 (689)
-. +..+ +-..+.|.+++..+ ....++..|+.+|..+.
T Consensus 437 l~-~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 437 LS-AEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred cC-HHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 11 1111 22456777777774 45566667777776554
No 304
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=76.14 E-value=19 Score=42.19 Aligned_cols=134 Identities=19% Similarity=0.212 Sum_probs=92.5
Q ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhh-cCCCHHHHHHHHHHHHhhhhchHHHHH
Q 005598 486 ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLL-GNGTPRGKKDAATALFNLSIYHENKAR 564 (689)
Q Consensus 486 ~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL-~~~~~~v~~~Al~aL~nLs~~~~n~~~ 564 (689)
..+++.|..-+++.+..+++.++..+..++..-+ ...+..-++|.|-.+. ++.+..++.+++.|+..|. +.
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~------q~ 459 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI------QR 459 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH------HH
Confidence 3567778888888889999999988888765333 2333445577776663 4557889999999998886 33
Q ss_pred HHHhCcHHHHHHhc----CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCCHHHHH
Q 005598 565 IVQAGAVKHLVDLM----DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKE 627 (689)
Q Consensus 565 lv~~G~v~~Lv~LL----~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e 627 (689)
+-...+++.+..++ ..+..++...+.+..++.....+.+++..+.++|.++-+...+.-...+
T Consensus 460 lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~L~~~Q 526 (700)
T KOG2137|consen 460 LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPSLNGEQ 526 (700)
T ss_pred HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcccccHHH
Confidence 33345555555554 3567788888888888877443336677788899998887766543333
No 305
>PRK14707 hypothetical protein; Provisional
Probab=76.04 E-value=2.9e+02 Score=37.14 Aligned_cols=237 Identities=14% Similarity=0.064 Sum_probs=122.4
Q ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHH-hhcCCccHHH
Q 005598 405 QVRKLVEDLKS-TSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLN-LSINDNNKSA 482 (689)
Q Consensus 405 ~V~~Lv~~L~s-~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~n-Ls~~~~~k~~ 482 (689)
.|..++.-|.. ++...+..|+..|..-...+++-+..+-..|+-..|-.+-+.++..+...++..|.. ++.+.+.+..
T Consensus 374 ~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~ 453 (2710)
T PRK14707 374 GVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKA 453 (2710)
T ss_pred HHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhh
Confidence 44444444442 455667777777765555566777777665666666555556777777777777754 3444444433
Q ss_pred HHHcCCHHHHHHHHcC-CCHHHHHHHHHH-HHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHH-HHHHHHHhhhhch
Q 005598 483 IANANAIEPLIHVLQT-GSPEARENAAAT-LFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKK-DAATALFNLSIYH 559 (689)
Q Consensus 483 i~~~g~l~~Lv~lL~s-~~~~~~~~Aa~a-L~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~-~Al~aL~nLs~~~ 559 (689)
+--.+ |...+..|+. ++..+-..|+.. ...|+...+.+..+--.++...|-.|-+-.+..... .+.++...+.. +
T Consensus 454 ~~p~~-va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~-~ 531 (2710)
T PRK14707 454 LDPIN-VTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVD-E 531 (2710)
T ss_pred cChHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhcc-c
Confidence 32222 3334444443 333333333333 344555555444443334444444444444433333 33333334332 2
Q ss_pred HHHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhcc-CCHHHHHHHHHHHHHH
Q 005598 560 ENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAALLQL 636 (689)
Q Consensus 560 ~n~~~lv~~G~v~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s-~s~~~~e~Av~aL~~L 636 (689)
..........-+..++.-| .++...++.++..|..+.........-.+...|..++..|.. ........|+..|...
T Consensus 532 ~~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L~aq~Vs~llNaLSKWP~~~aC~~Aa~~LA~~ 611 (2710)
T PRK14707 532 LQLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKDLHRQGVVIVLNALSKWPDTAVCAEAVNALAER 611 (2710)
T ss_pred hhhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhhhhhHHHHHHHhhccCCCcHHHHHHHHHHHHH
Confidence 2223333333344455555 355667777777777765544444444445567777777754 3445555555555555
Q ss_pred hhCCHhh
Q 005598 637 CTNSSRF 643 (689)
Q Consensus 637 ~~~~~~~ 643 (689)
....+..
T Consensus 612 l~~~~~l 618 (2710)
T PRK14707 612 LVDEPDL 618 (2710)
T ss_pred hccChhh
Confidence 5444433
No 306
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=75.99 E-value=4.4 Score=35.71 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=29.5
Q ss_pred CCCCCCCccccccccccccCcee--cCCCccccHHHHH
Q 005598 93 SPVPIPSDFCCPLSLELMTDPVI--VASGQTYERAFIK 128 (689)
Q Consensus 93 ~~~~~p~~f~CpI~~~lm~dPV~--~~~G~ty~r~~I~ 128 (689)
..+.+.++-.|++|++.+.+++. .||||.|-..|+.
T Consensus 71 ~~v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 71 RSVVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ceEEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 45567888889999998888775 5999999888865
No 307
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=75.92 E-value=2 Score=37.73 Aligned_cols=27 Identities=19% Similarity=0.545 Sum_probs=23.9
Q ss_pred CCCccccHHHHHHHHhcCCCCCCCCCCc
Q 005598 117 ASGQTYERAFIKKWIDLGLFVCPKTRQT 144 (689)
Q Consensus 117 ~~G~ty~r~~I~~~l~~~~~~cP~t~~~ 144 (689)
.|.|.|--.||.+|++.+ ..||.+.++
T Consensus 80 ~CNHaFH~hCisrWlktr-~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTR-NVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhhc-CcCCCcCcc
Confidence 699999999999999986 569999865
No 308
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.84 E-value=15 Score=38.88 Aligned_cols=143 Identities=17% Similarity=0.253 Sum_probs=92.9
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHH
Q 005598 402 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 481 (689)
Q Consensus 402 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~ 481 (689)
-...+...+..|.+.+++....++..|+.|+...++...-.. ...|..++.-++.....|-..|+.++..+...-++
T Consensus 86 p~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~-- 162 (334)
T KOG2933|consen 86 PEAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNN-- 162 (334)
T ss_pred HHHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH--
Confidence 346788899999999999999999999999875543332221 14666677777777778888888888887532222
Q ss_pred HHHHcCCHHHHHHHH-cCC---CHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhh
Q 005598 482 AIANANAIEPLIHVL-QTG---SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL 555 (689)
Q Consensus 482 ~i~~~g~l~~Lv~lL-~s~---~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nL 555 (689)
.+.+ .+..++..| ... +.-+++.|-.+|..+...-.. .-+++.|...+++.++.++..++.+..+.
T Consensus 163 ~i~~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 163 SIDQ--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred HHHH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhhcccccc
Confidence 1112 344444433 322 345777777777776533221 13456667777777888877777666554
No 309
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.73 E-value=0.91 Score=47.00 Aligned_cols=40 Identities=23% Similarity=0.391 Sum_probs=30.7
Q ss_pred CccccccccccccCceecCCCccc-cHHHHHHHHhcCC--CCCCCCCCcC
Q 005598 99 SDFCCPLSLELMTDPVIVASGQTY-ERAFIKKWIDLGL--FVCPKTRQTL 145 (689)
Q Consensus 99 ~~f~CpI~~~lm~dPV~~~~G~ty-~r~~I~~~l~~~~--~~cP~t~~~l 145 (689)
.+.+|-||++..+|=|.++|||.. |-.| |. ..||+||+.+
T Consensus 299 ~~~LC~ICmDaP~DCvfLeCGHmVtCt~C-------Gkrm~eCPICRqyi 341 (350)
T KOG4275|consen 299 TRRLCAICMDAPRDCVFLECGHMVTCTKC-------GKRMNECPICRQYI 341 (350)
T ss_pred HHHHHHHHhcCCcceEEeecCcEEeehhh-------ccccccCchHHHHH
Confidence 378999999999999999999974 3333 32 2488888754
No 310
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.72 E-value=18 Score=38.46 Aligned_cols=135 Identities=19% Similarity=0.267 Sum_probs=80.4
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHhhhhchH-HHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHh
Q 005598 530 IGPLVDLLGNGTPRGKKDAATALFNLSIYHE-NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQ 607 (689)
Q Consensus 530 I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~-n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~ 607 (689)
+...++.|.+.+...+..++..|..|+.++. ....++ ..++-.+++-+ .....+...|+.+++.|...-... +.+
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~--i~~ 166 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS--IDQ 166 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 4445556666677777777778888877554 211111 22334444444 345667778888888776532221 111
Q ss_pred cCcHHHHH-HHhcc---CCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHH
Q 005598 608 ENGIPVLV-EVVEL---GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 676 (689)
Q Consensus 608 ~g~v~~Lv-~lL~s---~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~ 676 (689)
.+..++ .|+.. ...-+++.|-.+|..+..+-. -..+++.|...+++.+++++.++..+.-
T Consensus 167 --~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vt-------p~~~L~~L~~~~~~~n~r~r~~a~~~~~ 230 (334)
T KOG2933|consen 167 --ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVT-------PQKLLRKLIPILQHSNPRVRAKAALCFS 230 (334)
T ss_pred --HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccC-------hHHHHHHHHHHHhhhchhhhhhhhcccc
Confidence 233333 33333 345678888888888776532 1345677888888888888888876543
No 311
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=75.65 E-value=1.2 Score=51.87 Aligned_cols=64 Identities=16% Similarity=0.329 Sum_probs=48.5
Q ss_pred ccccccccccccCceecCCCccccHHHHHHHHhc--CCCCCCCCCCcCCCCCCCccHHHHHHHHHH
Q 005598 100 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL--GLFVCPKTRQTLAHTTLIPNYTVKALIANW 163 (689)
Q Consensus 100 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~--~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~ 163 (689)
++.||||.....+|+.+.|-|.||+.|+-.-|.. +...||+|+.......+..-..-.+++++.
T Consensus 21 ~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vqe~ 86 (684)
T KOG4362|consen 21 ILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSKES 86 (684)
T ss_pred hccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHHHh
Confidence 4679999999999999999999999999886543 345699999766655544444455666644
No 312
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=74.51 E-value=44 Score=39.37 Aligned_cols=107 Identities=19% Similarity=0.104 Sum_probs=70.5
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHH
Q 005598 487 NAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIV 566 (689)
Q Consensus 487 g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv 566 (689)
+.+..+++...+.+..+|...+..|.-|.....-...-+-.+....|..-|.+..+.++..|+.+|..+-..+.+ -
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d----e 160 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD----E 160 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC----C
Confidence 556666677777888999999999888865222222223346677777778888999999999999988642211 0
Q ss_pred HhCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCch
Q 005598 567 QAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPD 600 (689)
Q Consensus 567 ~~G~v~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e 600 (689)
+..++..++.++ +++.++...|+ .||+-.+.
T Consensus 161 e~~v~n~l~~liqnDpS~EVRRaaL---snI~vdns 193 (892)
T KOG2025|consen 161 ECPVVNLLKDLIQNDPSDEVRRAAL---SNISVDNS 193 (892)
T ss_pred cccHHHHHHHHHhcCCcHHHHHHHH---HhhccCcc
Confidence 123556677777 66777776554 44444333
No 313
>PRK14707 hypothetical protein; Provisional
Probab=74.27 E-value=2.4e+02 Score=37.89 Aligned_cols=253 Identities=15% Similarity=0.083 Sum_probs=127.1
Q ss_pred hHHHHHHHHhcC--CCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHH-hhcCCccH
Q 005598 404 TQVRKLVEDLKS--TSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLN-LSINDNNK 480 (689)
Q Consensus 404 ~~V~~Lv~~L~s--~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~n-Ls~~~~~k 480 (689)
..|..++.-+.. +++ .+.+|+..|.........-+..+-..|+-..|-.+-+..+..+..+|+.+|.. |+.+..-+
T Consensus 205 q~ia~~lNa~sKWp~~~-~c~~aa~~la~~l~~~~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~ 283 (2710)
T PRK14707 205 QGVATVLNALCKWPDTP-DCGNAVSALAERLADESRLRNELKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLR 283 (2710)
T ss_pred HHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHcCcHHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHH
Confidence 344555555542 344 35566666654444333334434333444444333344565566666666543 44333333
Q ss_pred HHHHHcCCHHHHHHHHc-CCCHHH-HHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHHhhhh
Q 005598 481 SAIANANAIEPLIHVLQ-TGSPEA-RENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSI 557 (689)
Q Consensus 481 ~~i~~~g~l~~Lv~lL~-s~~~~~-~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~ 557 (689)
..+-. ..+...+.-|+ -++..+ +..|..+...|..+.+-+..+-..++-..|-.|-+=. +..+...|......|+.
T Consensus 284 ~al~~-q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~ 362 (2710)
T PRK14707 284 KALDP-INVTQALNALSKWADLPVCAEAAIALAERLADDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVA 362 (2710)
T ss_pred HhcCH-HHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhcc
Confidence 33222 22333333333 234333 4444444444555444444332223333333333333 44555555555556666
Q ss_pred chHHHHHHHHhCcHHHHHHhcC--CChHHHHHHHHHHHH-HhCCchhHHHHHhcCcHHHHHHHh-ccCCHHHHHHHHHHH
Q 005598 558 YHENKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLAN-LATIPDGRVAIGQENGIPVLVEVV-ELGSARGKENAAAAL 633 (689)
Q Consensus 558 ~~~n~~~lv~~G~v~~Lv~LL~--~~~~v~e~Al~~L~n-La~~~e~r~~i~~~g~v~~Lv~lL-~s~s~~~~e~Av~aL 633 (689)
.++.+..+- ..++..++.-|+ ++...+..|...|+. |...++-+..+--.|+ ..++.-| +=.+..+...|+..|
T Consensus 363 d~~l~~~l~-~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~v-an~lnalsKWPd~~~C~~aa~~l 440 (2710)
T PRK14707 363 DPELRKDLE-PQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGV-SNALNALAKWPDLPICGQAVSAL 440 (2710)
T ss_pred CHhhhcccc-hhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhH-HHHHHHhhcCCcchhHHHHHHHH
Confidence 666665543 445556666663 556677766666655 5556666666654444 4444444 336788888888888
Q ss_pred HHHhhCCHhhHHHHHhCCChHHHHHhh
Q 005598 634 LQLCTNSSRFCSMVLQEGAVPPLVALS 660 (689)
Q Consensus 634 ~~L~~~~~~~~~~lv~~g~i~~L~~LL 660 (689)
..-..++.+.+..+--.++...|--+.
T Consensus 441 A~~la~d~~l~~~~~p~~va~~LnalS 467 (2710)
T PRK14707 441 AGRLAHDTELCKALDPINVTQALDALS 467 (2710)
T ss_pred HHHHhccHHHHhhcChHHHHHHHHHhh
Confidence 876667666665554444444443333
No 314
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=74.18 E-value=16 Score=34.64 Aligned_cols=72 Identities=11% Similarity=0.111 Sum_probs=61.4
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCc-ccHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhh
Q 005598 403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNM-DNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLS 474 (689)
Q Consensus 403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~-~nr~~i~~~g~I~~Lv~lL~s-~~~~v~~~Al~aL~nLs 474 (689)
+..++.|.+.|.+.++.+|..|+..|-.+.+... .....+....++..|+.++.. .+..|+..++..|..++
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999988543 345567777899999999987 78899999999998876
No 315
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=74.14 E-value=2.9 Score=38.76 Aligned_cols=52 Identities=17% Similarity=0.240 Sum_probs=38.5
Q ss_pred ccccccccccccC--cee-cCCCcc------ccHHHHHHHHhcCCCCCCCCCCcCCCCCCCc
Q 005598 100 DFCCPLSLELMTD--PVI-VASGQT------YERAFIKKWIDLGLFVCPKTRQTLAHTTLIP 152 (689)
Q Consensus 100 ~f~CpI~~~lm~d--PV~-~~~G~t------y~r~~I~~~l~~~~~~cP~t~~~l~~~~l~p 152 (689)
.+-|.||.+-..+ =|+ ++||-+ ||..|+++|-+ ....+|.-|...-...+.|
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~-~~~rDPfnR~I~y~F~fPf 86 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR-ERNRDPFNRNIKYWFNFPF 86 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh-hccCCCcccceEEEEeCCC
Confidence 5789999988777 666 577755 99999999954 4466999987644444444
No 316
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=73.95 E-value=46 Score=40.41 Aligned_cols=174 Identities=13% Similarity=0.063 Sum_probs=101.0
Q ss_pred cCCCHHHHHHHHHHHHhcccCchhHHHHH-hhCChHHHHHhhc-CCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHH
Q 005598 497 QTGSPEARENAAATLFSLSVIEDNKIKIG-RSGAIGPLVDLLG-NGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHL 574 (689)
Q Consensus 497 ~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~-~~g~I~~Lv~LL~-~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~L 574 (689)
.+.+..-|..|+..+........ ....- -.|.+..+++... +.+..+...++.+|..|+..-..-..=...++.+.|
T Consensus 263 ~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~l 341 (815)
T KOG1820|consen 263 LSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSL 341 (815)
T ss_pred hccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchH
Confidence 34455555555555554433222 11111 1244444444433 457788888888888887632222333345677777
Q ss_pred HHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCH-hhHHHHHhCCC
Q 005598 575 VDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGA 652 (689)
Q Consensus 575 v~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~-~~~~~lv~~g~ 652 (689)
++-+ +....+.+.++.++..++. ........+.+...+.++++..+..+...+..+..... .....-.-.+.
T Consensus 342 ld~lkekk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l 415 (815)
T KOG1820|consen 342 LDRLKEKKSELRDALLKALDAILN------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTL 415 (815)
T ss_pred HHHhhhccHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHH
Confidence 7777 4556666766666665554 11122346777888899999999987777766555443 21111112356
Q ss_pred hHHHHHhhhcCCHHHHHHHHHHHHH
Q 005598 653 VPPLVALSQSGTPRAKEKAQALLSY 677 (689)
Q Consensus 653 i~~L~~LL~~~~~~vr~~A~~lL~~ 677 (689)
++.++....+.+..+|..|.+++.-
T Consensus 416 ~p~~~~~~~D~~~~VR~Aa~e~~~~ 440 (815)
T KOG1820|consen 416 VPHLIKHINDTDKDVRKAALEAVAA 440 (815)
T ss_pred hHHHhhhccCCcHHHHHHHHHHHHH
Confidence 6777777767778888888875443
No 317
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=73.60 E-value=79 Score=36.83 Aligned_cols=129 Identities=19% Similarity=0.149 Sum_probs=69.7
Q ss_pred CChHHHHHhhcCC----CHHHHHHHHHHHHhhhh----chHHHHHHHHhCcHHHHHHhcC-----CChHHHHHHHHHHHH
Q 005598 528 GAIGPLVDLLGNG----TPRGKKDAATALFNLSI----YHENKARIVQAGAVKHLVDLMD-----PAAGMVDKAVAVLAN 594 (689)
Q Consensus 528 g~I~~Lv~LL~~~----~~~v~~~Al~aL~nLs~----~~~n~~~lv~~G~v~~Lv~LL~-----~~~~v~e~Al~~L~n 594 (689)
..+..+..++.+. ...+...|+.++.+|.. ....+...+....++.|.+.|. .+......++.+|+|
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 4567777777753 44566666666666643 2221112233345555655551 222334456667776
Q ss_pred HhCCchhHHHHHhcCcHHHHHHHhc---cCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCC--HHHHH
Q 005598 595 LATIPDGRVAIGQENGIPVLVEVVE---LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGT--PRAKE 669 (689)
Q Consensus 595 La~~~e~r~~i~~~g~v~~Lv~lL~---s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~--~~vr~ 669 (689)
+.. ...++.|..++. ..+..++..|+.+|..++...+. .+.+.|+.+..+.. +++|-
T Consensus 473 ~g~----------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~--------~v~~~l~~i~~n~~e~~EvRi 534 (574)
T smart00638 473 AGH----------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR--------KVQEVLLPIYLNRAEPPEVRM 534 (574)
T ss_pred cCC----------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch--------HHHHHHHHHHcCCCCChHHHH
Confidence 543 123455565654 23678899999999988765542 22334555554432 45554
Q ss_pred HHHHH
Q 005598 670 KAQAL 674 (689)
Q Consensus 670 ~A~~l 674 (689)
.|..+
T Consensus 535 aA~~~ 539 (574)
T smart00638 535 AAVLV 539 (574)
T ss_pred HHHHH
Confidence 44443
No 318
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=73.18 E-value=16 Score=33.94 Aligned_cols=74 Identities=19% Similarity=0.250 Sum_probs=60.2
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHh-hHHHHHhCCChHHHHHhhhcC---CHHHHHHHHHHHHHhhcCcC
Q 005598 610 GIPVLVEVVELGSARGKENAAAALLQLCTNSSR-FCSMVLQEGAVPPLVALSQSG---TPRAKEKAQALLSYFRNQRH 683 (689)
Q Consensus 610 ~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~-~~~~lv~~g~i~~L~~LL~~~---~~~vr~~A~~lL~~L~~~~~ 683 (689)
++..|-+.|.++++.++..|+.+|-.|..+++. ....+.....+..|..++... .+.+++++.+++......-.
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 467888889999999999999999999999865 666666667777799988763 57899999999887765433
No 319
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=73.17 E-value=19 Score=33.97 Aligned_cols=72 Identities=15% Similarity=0.204 Sum_probs=59.9
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-cccHHHHHhcCcHHHHHHhhcC------CCHHHHHHHHHHHHHhh
Q 005598 403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHN-MDNRMVIANCGAINILVDMLHS------SETKIQENAVTALLNLS 474 (689)
Q Consensus 403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s-~~nr~~i~~~g~I~~Lv~lL~s------~~~~v~~~Al~aL~nLs 474 (689)
...+..+.+.|++.++.++..|+..|-.+.+.. ......+...+++.-|+.++.. .+..|+...+..|...+
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999888743 4456777778999999999953 46789999998888775
No 320
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.11 E-value=1e+02 Score=36.70 Aligned_cols=135 Identities=14% Similarity=0.140 Sum_probs=74.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHh-hcCCCHHHHHHHHHHHHHhhc--CCcc---H
Q 005598 407 RKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDM-LHSSETKIQENAVTALLNLSI--NDNN---K 480 (689)
Q Consensus 407 ~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~l-L~s~~~~v~~~Al~aL~nLs~--~~~~---k 480 (689)
..+-+.|.+++.+.+..|++.+..+.-..+..-. .+-.++++ |-+.+.+++.- +..-+.+.- +.+. .
T Consensus 23 ~~ik~~Lek~~~~~KIeamK~ii~~mlnGe~~p~------Llm~IiRfvlps~~~elKKL-ly~ywE~vPKt~~dgkl~~ 95 (948)
T KOG1058|consen 23 DEIKEKLEKGDDEVKIEAMKKIIALMLNGEDLPS------LLMTIIRFVLPSRNHELKKL-LYYYWELVPKTDSDGKLLH 95 (948)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHcCCCchH------HHHHHhheeeccCchHHHHH-HHHHHHHccccCCCcccHH
Confidence 3566778888888888888866555443322211 11122222 22334444332 333334431 1111 1
Q ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhh
Q 005598 481 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 557 (689)
Q Consensus 481 ~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~ 557 (689)
++|.-. ..+-+=|++++.-+|-..++.|+.|-.. + + -...+|.+...|.+.+.-++++|..|++.+-.
T Consensus 96 EMILvc---na~RkDLQHPNEyiRG~TLRFLckLkE~-E----L-lepl~p~IracleHrhsYVRrNAilaifsIyk 163 (948)
T KOG1058|consen 96 EMILVC---NAYRKDLQHPNEYIRGSTLRFLCKLKEP-E----L-LEPLMPSIRACLEHRHSYVRRNAILAIFSIYK 163 (948)
T ss_pred HHHHHH---HHHhhhccCchHhhcchhhhhhhhcCcH-H----H-hhhhHHHHHHHHhCcchhhhhhhheeehhHHh
Confidence 122111 1222346678888888888888877311 1 1 12456777777888899999999998887654
No 321
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=72.78 E-value=11 Score=32.72 Aligned_cols=70 Identities=17% Similarity=0.222 Sum_probs=55.7
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 005598 404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI 475 (689)
Q Consensus 404 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~ 475 (689)
...+..+..|.++.+.++..++..|+.|..... ...+....++..+...|+.+++-|=.+|+.+|..|+.
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 456778889999999999999999999988654 1222223677788888999999999999999988873
No 322
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.98 E-value=85 Score=38.66 Aligned_cols=80 Identities=21% Similarity=0.220 Sum_probs=61.8
Q ss_pred HHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHh---ccCCHHHHHHHHHHHH
Q 005598 560 ENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVV---ELGSARGKENAAAALL 634 (689)
Q Consensus 560 ~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~v~~Lv~lL---~s~s~~~~e~Av~aL~ 634 (689)
..++++..+|++..|+..+ ...+.+.-.-+.+|..+++ ++.+.+.....|.+..|++++ .+++...--+|..++-
T Consensus 899 pdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkIve 978 (2799)
T KOG1788|consen 899 PDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVE 978 (2799)
T ss_pred chHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHH
Confidence 3578889999999999976 6667777788889999988 566777777889999998887 3455555566677776
Q ss_pred HHhhC
Q 005598 635 QLCTN 639 (689)
Q Consensus 635 ~L~~~ 639 (689)
.||..
T Consensus 979 mLgay 983 (2799)
T KOG1788|consen 979 MLGAY 983 (2799)
T ss_pred HHhhc
Confidence 66654
No 323
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=71.90 E-value=1.3 Score=54.42 Aligned_cols=43 Identities=19% Similarity=0.432 Sum_probs=37.9
Q ss_pred Ccccccccccccc-CceecCCCccccHHHHHHHHhcCCCCCCCCC
Q 005598 99 SDFCCPLSLELMT-DPVIVASGQTYERAFIKKWIDLGLFVCPKTR 142 (689)
Q Consensus 99 ~~f~CpI~~~lm~-dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~ 142 (689)
..+.|+||+++|+ -=-+.-|||.||..|+..|+... ..||.|.
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~-s~~~~~k 1195 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYAS-SRCPICK 1195 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHh-ccCcchh
Confidence 4579999999999 66678999999999999999875 6699997
No 324
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=71.56 E-value=13 Score=35.16 Aligned_cols=72 Identities=17% Similarity=0.191 Sum_probs=60.6
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHHhhCCH-hhHHHHHhCCChHHHHHhhhc-CCHHHHHHHHHHHHHhhcC
Q 005598 610 GIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVALSQS-GTPRAKEKAQALLSYFRNQ 681 (689)
Q Consensus 610 ~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~-~~~~~lv~~g~i~~L~~LL~~-~~~~vr~~A~~lL~~L~~~ 681 (689)
++..|.+.|.+.++.++..|+.+|-.|..+++ .....+.....+..|..++.. ..+.+++++..++......
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 56788888889999999999999999999876 466677777889999999988 5689999999988876543
No 325
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=70.70 E-value=40 Score=32.54 Aligned_cols=108 Identities=19% Similarity=0.239 Sum_probs=67.3
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhc--CcHHHHHHhhcCCC-HHHHHHHHHHHHHhhc----
Q 005598 403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC--GAINILVDMLHSSE-TKIQENAVTALLNLSI---- 475 (689)
Q Consensus 403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~--g~I~~Lv~lL~s~~-~~v~~~Al~aL~nLs~---- 475 (689)
...+..+..+|++.+++.+-.++..+...+..++ ...+.+. -.+..|+.+|+..+ ..+.+.++.+|..|..
T Consensus 24 ~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 24 HKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4566778888889888888888888888777432 4555444 46888999998754 5567888888877742
Q ss_pred CCccHHHHHHc---CCHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 005598 476 NDNNKSAIANA---NAIEPLIHVLQTGSPEARENAAATLFSL 514 (689)
Q Consensus 476 ~~~~k~~i~~~---g~l~~Lv~lL~s~~~~~~~~Aa~aL~nL 514 (689)
.++....+.-. +.++.++.+++. ......++.+|..+
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~l 141 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATL 141 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHH
Confidence 23333333221 455556666653 23344444444443
No 326
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=70.65 E-value=38 Score=42.00 Aligned_cols=137 Identities=18% Similarity=0.131 Sum_probs=94.5
Q ss_pred ChHHHHHhhcC----CCHHHHHHHHHHHHhhhh-chHHHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchh
Q 005598 529 AIGPLVDLLGN----GTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDG 601 (689)
Q Consensus 529 ~I~~Lv~LL~~----~~~~v~~~Al~aL~nLs~-~~~n~~~lv~~G~v~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~ 601 (689)
+.|.++.+.+. .++.++.+|..||..+.. ..+-+ .-.++.|+.++ .+...+...++.+++-|+..-.+
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc-----es~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC-----ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 44555666643 367888888888887755 22222 23467777777 45566667777777777652211
Q ss_pred HHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 005598 602 RVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 679 (689)
Q Consensus 602 r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~ 679 (689)
- + ...-+.|...|...++.++..|+.+|.+|..++ .+.--|.+..+..++.+++++++..|....+-|+
T Consensus 995 l---i-e~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 995 L---I-EPWTEHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred c---c-chhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 1 0 123467888889999999999999999998664 3333688999999999999999999995444443
No 327
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.56 E-value=4.6 Score=44.04 Aligned_cols=59 Identities=20% Similarity=0.424 Sum_probs=38.6
Q ss_pred CccccccccccccCc---eecCCCccccHHHHHHHHhc----CCC---CCCCCCCcCCCCCCCccHHHHHHHH
Q 005598 99 SDFCCPLSLELMTDP---VIVASGQTYERAFIKKWIDL----GLF---VCPKTRQTLAHTTLIPNYTVKALIA 161 (689)
Q Consensus 99 ~~f~CpI~~~lm~dP---V~~~~G~ty~r~~I~~~l~~----~~~---~cP~t~~~l~~~~l~pn~~l~~~i~ 161 (689)
.-|.|-||.+-..=- +.+||+|.|||.|...|+.. |.. .||.++-+ ..-.| -.|++++.
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~---~~a~~-g~vKelvg 251 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG---SVAPP-GQVKELVG 251 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc---ccCCc-hHHHHHHH
Confidence 458899999765443 35899999999999999864 222 26655432 22223 36666665
No 328
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=70.45 E-value=1.2e+02 Score=30.97 Aligned_cols=129 Identities=13% Similarity=0.082 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-CC--C------------h----HHHHHHHHHHHHHhCCchh
Q 005598 541 TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DP--A------------A----GMVDKAVAVLANLATIPDG 601 (689)
Q Consensus 541 ~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-~~--~------------~----~v~e~Al~~L~nLa~~~e~ 601 (689)
+......++..+..|...++....+...+.++.+.+.| .- . . .+...-+..|+.|+.++.|
T Consensus 77 ~~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~G 156 (226)
T PF14666_consen 77 NQKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNG 156 (226)
T ss_pred chHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhH
Confidence 35667778888888888888777777888888888776 11 0 0 1233456788999999999
Q ss_pred HHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 005598 602 RVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 679 (689)
Q Consensus 602 r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~ 679 (689)
.+.+-+.++...+..++...+. ......+|.+|=...+.. .=..|-..|.+++..+|..|...|+.+-
T Consensus 157 l~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~~~~--------~R~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 157 LKLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSVDGH--------PRIILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCCccH--------HHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999976533 222222333331111111 1224556788899999999999888764
No 329
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=69.62 E-value=14 Score=44.28 Aligned_cols=145 Identities=17% Similarity=0.142 Sum_probs=95.6
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHH
Q 005598 446 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIAN--ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIK 523 (689)
Q Consensus 446 g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~--~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~ 523 (689)
..+|.|++.........+..=+.+|.++-.+.. +..+.. ...+|.|++.|.-++..+|..+..+|.-+......-..
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP-~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVP-KQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCC-HHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 688889888876555555565666666543322 233332 25788889999999999988888887765432111110
Q ss_pred HHhhCChHHHHHhhcCCC---HHHHHHHHHHHHhhhh-chHHHHHHHHhCcHHHHHHhcCCChHH-HHHHHHH
Q 005598 524 IGRSGAIGPLVDLLGNGT---PRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLMDPAAGM-VDKAVAV 591 (689)
Q Consensus 524 I~~~g~I~~Lv~LL~~~~---~~v~~~Al~aL~nLs~-~~~n~~~lv~~G~v~~Lv~LL~~~~~v-~e~Al~~ 591 (689)
---.-.+|.++.+=++.+ ..++..|+.+|..|+. .+.+.-.-.+..++..|.+.|++.+++ ++.|+.+
T Consensus 946 ~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 946 EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 111245676766655553 6788899999999998 666665666778889999999665554 4566544
No 330
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=69.40 E-value=84 Score=32.89 Aligned_cols=177 Identities=16% Similarity=0.169 Sum_probs=104.1
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc-------CcccHHHHHhcCcHHHHHHhhcCCC----HHHHHHHHHHHH
Q 005598 403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKH-------NMDNRMVIANCGAINILVDMLHSSE----TKIQENAVTALL 471 (689)
Q Consensus 403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~-------s~~nr~~i~~~g~I~~Lv~lL~s~~----~~v~~~Al~aL~ 471 (689)
.+..+.+++.+.+... ...++..|..|+.. +.++|-.+.-.+.+|.++.-+..++ ......++..|.
T Consensus 63 ~Glq~Ll~KGL~Ss~t--~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La 140 (262)
T PF14225_consen 63 EGLQPLLLKGLRSSST--YELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALA 140 (262)
T ss_pred hhHHHHHhCccCCCCc--HHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHH
Confidence 4666777888887653 34455666666542 2224444444466777777776655 133445567777
Q ss_pred HhhcCCccHHHHHHcCCHHHHHHHHcCC----CHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHH
Q 005598 472 NLSINDNNKSAIANANAIEPLIHVLQTG----SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKD 547 (689)
Q Consensus 472 nLs~~~~~k~~i~~~g~l~~Lv~lL~s~----~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~ 547 (689)
.++.... ...+..++.....+ ..+....++..|..-- .++. +...+..|+.+|.++....+..
T Consensus 141 ~~a~~~~-------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f-~P~~-----~~~~l~~Ll~lL~n~~~w~~~~ 207 (262)
T PF14225_consen 141 QVAEAQG-------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAF-FPDH-----EFQILTFLLGLLENGPPWLRRK 207 (262)
T ss_pred HHHHhCC-------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh-Cchh-----HHHHHHHHHHHHhCCcHHHHHH
Confidence 7762211 12233333333222 1334444444444321 1111 1245677889999998999999
Q ss_pred HHHHHHhhhhchHHHHHHHHhCcHHHHHHhcCCChHHHHHHHHHHHHHhC
Q 005598 548 AATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLAT 597 (689)
Q Consensus 548 Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL~~~~~v~e~Al~~L~nLa~ 597 (689)
.+..|..|-..-+.+.. ...+.+..|+++|.. +....|+.+|.++..
T Consensus 208 ~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t--~~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 208 TLQILKVLLPHVDMRSP-HGADLISPLLRLLQT--DLWMEALEVLDEIVT 254 (262)
T ss_pred HHHHHHHHhccccCCCC-cchHHHHHHHHHhCC--ccHHHHHHHHHHHHh
Confidence 99999988775444433 667789999999943 446788888877644
No 331
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=68.75 E-value=13 Score=28.85 Aligned_cols=33 Identities=18% Similarity=0.386 Sum_probs=19.6
Q ss_pred CccccccccccccCceecCCCccccHHHHHHHHhc------CCCCCCCCCC
Q 005598 99 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL------GLFVCPKTRQ 143 (689)
Q Consensus 99 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~------~~~~cP~t~~ 143 (689)
+.|.||.|++- |+...+.+++.. ....||+|..
T Consensus 1 ~~f~CP~C~~~------------~~~~~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGKG------------FSESSLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCCc------------cCHHHHHHHHHhHCcCCCCCccCCCchh
Confidence 46889987762 334444444432 2245999975
No 332
>PLN02189 cellulose synthase
Probab=68.68 E-value=3.3 Score=50.53 Aligned_cols=46 Identities=15% Similarity=0.209 Sum_probs=37.5
Q ss_pred cccccccc-----cccCceec--CCCccccHHHHHHHHhcCCCCCCCCCCcCC
Q 005598 101 FCCPLSLE-----LMTDPVIV--ASGQTYERAFIKKWIDLGLFVCPKTRQTLA 146 (689)
Q Consensus 101 f~CpI~~~-----lm~dPV~~--~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~ 146 (689)
-.|.||++ .+-+|.+. .||.-.||.|.+---++|+..||.|+.++.
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 47999996 45567765 489999999997667778888999998876
No 333
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=68.65 E-value=25 Score=32.70 Aligned_cols=72 Identities=15% Similarity=0.153 Sum_probs=59.0
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-cccHHHHHhcCcHHHHHHhhcCCC--HHHHHHHHHHHHHhh
Q 005598 403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHN-MDNRMVIANCGAINILVDMLHSSE--TKIQENAVTALLNLS 474 (689)
Q Consensus 403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s-~~nr~~i~~~g~I~~Lv~lL~s~~--~~v~~~Al~aL~nLs 474 (689)
...++.|-+.|+++++.+|..|+..|-.+.+.. ......+....++..|..++.... +.|+..++..+...+
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999998863 445667777789999999887642 348888888887775
No 334
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=67.97 E-value=22 Score=33.51 Aligned_cols=73 Identities=14% Similarity=0.076 Sum_probs=60.3
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHHhhCCH-hhHHHHHhCCChHHHHHhhhcC-CHHHHHHHHHHHHHhhcCc
Q 005598 610 GIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLSYFRNQR 682 (689)
Q Consensus 610 ~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~-~~~~~lv~~g~i~~L~~LL~~~-~~~vr~~A~~lL~~L~~~~ 682 (689)
++..|.+.|.++++.++..|+.+|-.|..+++ .....+...+.+..|..++... .+++++++..++..-...-
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 56788888999999999999999999999864 5667777788899999988754 4789999999888766543
No 335
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=67.43 E-value=1.6e+02 Score=30.69 Aligned_cols=216 Identities=14% Similarity=0.102 Sum_probs=117.5
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcC-CccHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHhcccCchhHHHHHh
Q 005598 450 ILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLIHVLQT--GSPEARENAAATLFSLSVIEDNKIKIGR 526 (689)
Q Consensus 450 ~Lv~lL~s~~~~v~~~Al~aL~nLs~~-~~~k~~i~~~g~l~~Lv~lL~s--~~~~~~~~Aa~aL~nLs~~~~~k~~I~~ 526 (689)
.|-..|.+++..++..|+..|..+... +... ....-+..|+.++.+ .+......++..|..|.......... .
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~-~ 78 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES-A 78 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-H
Confidence 355667788889999999988876422 2111 112224445444332 24444444455555554322211111 1
Q ss_pred hCChHHHHHhhc--CCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhH
Q 005598 527 SGAIGPLVDLLG--NGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGR 602 (689)
Q Consensus 527 ~g~I~~Lv~LL~--~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~r 602 (689)
...+..+.+-.. ......+..+...|..|..+......-...+.+..+++++ +.+++-...+..++..+...-+
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~-- 156 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD-- 156 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--
Confidence 122233332222 2245677788888888876543222223456777888887 3456666677777776655222
Q ss_pred HHHHhcCcHHHHHHHhcc----------CCH--HHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHH
Q 005598 603 VAIGQENGIPVLVEVVEL----------GSA--RGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEK 670 (689)
Q Consensus 603 ~~i~~~g~v~~Lv~lL~s----------~s~--~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~ 670 (689)
. ...+..+.+.+.. +++ -.++.-...|.++-..++... .-++|.|++=|.++.+.+|.-
T Consensus 157 ---~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~~~~~K~D 227 (262)
T PF14500_consen 157 ---I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDSTSPSVKLD 227 (262)
T ss_pred ---c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCCCcHHHHH
Confidence 1 2334444444411 122 234444555665554444322 346889999999998889988
Q ss_pred HHHHHHHhhc
Q 005598 671 AQALLSYFRN 680 (689)
Q Consensus 671 A~~lL~~L~~ 680 (689)
+...|..+..
T Consensus 228 ~L~tL~~c~~ 237 (262)
T PF14500_consen 228 SLQTLKACIE 237 (262)
T ss_pred HHHHHHHHHH
Confidence 8887776653
No 336
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=67.36 E-value=38 Score=32.72 Aligned_cols=108 Identities=19% Similarity=0.130 Sum_probs=66.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHHc--CCHHHHHHHHcCCC-HHHHHHHHHHHHhccc----Cch
Q 005598 447 AINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANA--NAIEPLIHVLQTGS-PEARENAAATLFSLSV----IED 519 (689)
Q Consensus 447 ~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~--g~l~~Lv~lL~s~~-~~~~~~Aa~aL~nLs~----~~~ 519 (689)
.+..+..+|++.++.-+..++..+..++... ..+.+.+. ..+..|+.+|+..+ ..+.+.++.+|..|.. .++
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~-~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQC-SWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4556778888888887777777776665322 13444343 47888999998765 5677777777776643 334
Q ss_pred hHHHHHh---hCChHHHHHhhcCCCHHHHHHHHHHHHhhhh
Q 005598 520 NKIKIGR---SGAIGPLVDLLGNGTPRGKKDAATALFNLSI 557 (689)
Q Consensus 520 ~k~~I~~---~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~ 557 (689)
....+.. .+++..++.+++. ......++.+|..|-.
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 3333322 1566667777664 3444455555555543
No 337
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=67.28 E-value=18 Score=34.98 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=19.0
Q ss_pred ccccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcC
Q 005598 100 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTL 145 (689)
Q Consensus 100 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l 145 (689)
.+.||+|+-++.+. .+..||.|+.|-
T Consensus 134 ~~vC~vCGy~~~ge--------------------~P~~CPiCga~k 159 (166)
T COG1592 134 VWVCPVCGYTHEGE--------------------APEVCPICGAPK 159 (166)
T ss_pred EEEcCCCCCcccCC--------------------CCCcCCCCCChH
Confidence 68899996666652 346699999763
No 338
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=67.27 E-value=42 Score=39.43 Aligned_cols=162 Identities=19% Similarity=0.147 Sum_probs=82.6
Q ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHhcccCc-hhHHHHHhhCChHHHHHhhcCC----CHHHHHHHHHHHHhhhh----c
Q 005598 488 AIEPLIHVLQTGSPEARENAAATLFSLSVIE-DNKIKIGRSGAIGPLVDLLGNG----TPRGKKDAATALFNLSI----Y 558 (689)
Q Consensus 488 ~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~-~~k~~I~~~g~I~~Lv~LL~~~----~~~v~~~Al~aL~nLs~----~ 558 (689)
++..+..++.++..... .|+.+|..|.... ... ...+..+..|++.. ++.+...|+.++..|.. .
T Consensus 396 av~~i~~~I~~~~~~~~-ea~~~l~~l~~~~~~Pt-----~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~ 469 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTDD-EAAQLLASLPFHVRRPT-----EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVN 469 (618)
T ss_dssp HHHHHHHHHHTT-S-HH-HHHHHHHHHHHT----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCHH-HHHHHHHHHHhhcCCCC-----HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeec
Confidence 56666777766543222 2444555543321 111 13456666666542 45666667767766654 1
Q ss_pred h------HHHHHHHHhCcHHHHHHhcC-----CChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccC---CHH
Q 005598 559 H------ENKARIVQAGAVKHLVDLMD-----PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG---SAR 624 (689)
Q Consensus 559 ~------~n~~~lv~~G~v~~Lv~LL~-----~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~---s~~ 624 (689)
. ......+....++.|...|. .+......++.+|+|+.. ...++.|..++... +..
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~ 539 (618)
T PF01347_consen 470 SDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHF 539 (618)
T ss_dssp -----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HH
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchH
Confidence 1 11122333455666666552 334555677888888753 23677777777655 677
Q ss_pred HHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCC--HHHHHHHHH
Q 005598 625 GKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGT--PRAKEKAQA 673 (689)
Q Consensus 625 ~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~--~~vr~~A~~ 673 (689)
++..|+.+|..+....+. .+.+.|+.+..+.. .++|-.|..
T Consensus 540 ~R~~Ai~Alr~~~~~~~~--------~v~~~l~~I~~n~~e~~EvRiaA~~ 582 (618)
T PF01347_consen 540 IRVAAIQALRRLAKHCPE--------KVREILLPIFMNTTEDPEVRIAAYL 582 (618)
T ss_dssp HHHHHHHTTTTGGGT-HH--------HHHHHHHHHHH-TTS-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCcH--------HHHHHHHHHhcCCCCChhHHHHHHH
Confidence 888888888877666552 12344555555443 345544443
No 339
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.17 E-value=80 Score=35.73 Aligned_cols=160 Identities=14% Similarity=0.046 Sum_probs=93.4
Q ss_pred cCcHHHHHHhh----cCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHhcccCch
Q 005598 445 CGAINILVDML----HSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTG-SPEARENAAATLFSLSVIED 519 (689)
Q Consensus 445 ~g~I~~Lv~lL----~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~s~-~~~~~~~Aa~aL~nLs~~~~ 519 (689)
.|.+..++..+ .+++..++..|+..|.|++..-..+..-...-.+..++.-|-++ +.+++..|+.+|.-+.....
T Consensus 253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~ 332 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKAS 332 (533)
T ss_pred cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhh
Confidence 35444443333 34567889999999999976522222222334566677655544 57888888888876654222
Q ss_pred hHHHH-HhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHH--HHHhCcHHHHHHh---cCCChHHHHHHHHHHH
Q 005598 520 NKIKI-GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKAR--IVQAGAVKHLVDL---MDPAAGMVDKAVAVLA 593 (689)
Q Consensus 520 ~k~~I-~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~--lv~~G~v~~Lv~L---L~~~~~v~e~Al~~L~ 593 (689)
+.... +-..+.-.+..++.+.+++.+.+|..+...|+......++ +.+ .+...+..+ |......+-.|++...
T Consensus 333 ~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte-~v~k~~~~lllhl~d~~p~va~ACr~~~ 411 (533)
T KOG2032|consen 333 NDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTE-QVKKRLAPLLLHLQDPNPYVARACRSEL 411 (533)
T ss_pred hcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHH-HHHhccccceeeeCCCChHHHHHHHHHH
Confidence 22111 0113334566777788999999999998888875443333 332 222223333 3344455667888777
Q ss_pred HHhCCchhHHHH
Q 005598 594 NLATIPDGRVAI 605 (689)
Q Consensus 594 nLa~~~e~r~~i 605 (689)
..|.-.-.++++
T Consensus 412 ~~c~p~l~rke~ 423 (533)
T KOG2032|consen 412 RTCYPNLVRKEL 423 (533)
T ss_pred HhcCchhHHHHH
Confidence 777655455544
No 340
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=67.08 E-value=2e+02 Score=31.64 Aligned_cols=144 Identities=16% Similarity=0.087 Sum_probs=79.9
Q ss_pred hhCChHHHHHhhcCC-CHHHHHHHHHHHHhhhhchHHH-HHHHHhCcHHHHHHhc----CCChHHHHHHHHHHHHHhCCc
Q 005598 526 RSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHENK-ARIVQAGAVKHLVDLM----DPAAGMVDKAVAVLANLATIP 599 (689)
Q Consensus 526 ~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~~~n~-~~lv~~G~v~~Lv~LL----~~~~~v~e~Al~~L~nLa~~~ 599 (689)
+..-.+-+-+-+... ....+.+|+..|..|+...+.. ..++ .+.+..++.-. ..+..-.+.|+.++..|+...
T Consensus 208 EddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~-~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~ 286 (370)
T PF08506_consen 208 EDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL-MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKG 286 (370)
T ss_dssp HHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS
T ss_pred ccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhh
Confidence 444444444444432 4567778888999998643322 1122 23333333321 233456788999999998744
Q ss_pred hh----H---------HHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHH
Q 005598 600 DG----R---------VAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPR 666 (689)
Q Consensus 600 e~----r---------~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~ 666 (689)
.. . ..+....++|.|. --.+..+-.+..|+..+...-..-+. +.+ .++++.|+..|++++..
T Consensus 287 ~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~--~~l--~~~~~~l~~~L~~~~~v 361 (370)
T PF08506_consen 287 STTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK--EQL--LQIFPLLVNHLQSSSYV 361 (370)
T ss_dssp --BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H--HHH--HHHHHHHHHHTTSS-HH
T ss_pred ccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH--HHH--HHHHHHHHHHhCCCCcc
Confidence 22 1 2222233334333 11145678888899988887765442 222 34799999999999988
Q ss_pred HHHHHHHHH
Q 005598 667 AKEKAQALL 675 (689)
Q Consensus 667 vr~~A~~lL 675 (689)
+.--|+.++
T Consensus 362 v~tyAA~~i 370 (370)
T PF08506_consen 362 VHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHH
T ss_pred hhhhhhhhC
Confidence 888887653
No 341
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=66.79 E-value=1.3e+02 Score=29.66 Aligned_cols=56 Identities=20% Similarity=0.154 Sum_probs=33.6
Q ss_pred CCCccccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCCC-CccHHHHHHHHHHHHHcC
Q 005598 97 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTL-IPNYTVKALIANWCELNN 168 (689)
Q Consensus 97 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l-~pn~~l~~~i~~~~~~~~ 168 (689)
-+..|.||-|..- .||+ +.+. .++.||.||.+|...+- .--..|++.|+...+.-+
T Consensus 114 ~~~~Y~Cp~C~~r----------ytf~-----eA~~-~~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~~~~ 170 (178)
T PRK06266 114 NNMFFFCPNCHIR----------FTFD-----EAME-YGFRCPQCGEMLEEYDNSELIKELKEQIKELEEELK 170 (178)
T ss_pred CCCEEECCCCCcE----------EeHH-----HHhh-cCCcCCCCCCCCeecccHHHHHHHHHHHHHHHHHhc
Confidence 3678999988632 2232 1222 35889999999977421 112456777766655543
No 342
>PLN02195 cellulose synthase A
Probab=66.49 E-value=5 Score=48.73 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=38.3
Q ss_pred ccccccc-----cccCceec--CCCccccHHHHHHHHhcCCCCCCCCCCcCCCC
Q 005598 102 CCPLSLE-----LMTDPVIV--ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT 148 (689)
Q Consensus 102 ~CpI~~~-----lm~dPV~~--~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~ 148 (689)
.|.||++ .+-+|.+. .||.-.||.|.+=--++|+..||.|+.++..+
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk~~ 61 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYDAE 61 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccccc
Confidence 5999987 56688776 59999999999655667888899999999843
No 343
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=66.19 E-value=16 Score=33.75 Aligned_cols=51 Identities=16% Similarity=0.316 Sum_probs=41.7
Q ss_pred CCccccccccccccCceec----CCCccccHHHHHHHHhcC--CCCCCCCCCcCCCC
Q 005598 98 PSDFCCPLSLELMTDPVIV----ASGQTYERAFIKKWIDLG--LFVCPKTRQTLAHT 148 (689)
Q Consensus 98 p~~f~CpI~~~lm~dPV~~----~~G~ty~r~~I~~~l~~~--~~~cP~t~~~l~~~ 148 (689)
|.-+.|-||.+.-.|+--+ .||...|-.|--.-|+.- ...||+|+..+...
T Consensus 78 ~~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 78 PKLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CCceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 4668999999999999876 489999999998877643 45699999887653
No 344
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=66.10 E-value=57 Score=28.81 Aligned_cols=67 Identities=15% Similarity=0.169 Sum_probs=51.3
Q ss_pred HhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHH
Q 005598 567 QAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAAL 633 (689)
Q Consensus 567 ~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL 633 (689)
..+.+..|++.+ .+.....+.++..|..|..++.+.+.+.+-|++..|.++-...++..+...-.+|
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 355667777777 5566678999999999999999999999999988877776556666655544443
No 345
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=65.96 E-value=22 Score=33.47 Aligned_cols=71 Identities=20% Similarity=0.182 Sum_probs=58.0
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHHhhCCH-hhHHHHHhCCChHHHHHhhhc------CCHHHHHHHHHHHHHhhc
Q 005598 610 GIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVALSQS------GTPRAKEKAQALLSYFRN 680 (689)
Q Consensus 610 ~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~-~~~~~lv~~g~i~~L~~LL~~------~~~~vr~~A~~lL~~L~~ 680 (689)
++..|.+.|.+.++.++..|+.+|-.|..++. .....+.....+.-|+.++.. ....++.++..++..-..
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 56778888999999999999999999999875 466777778888889999863 247899999988876553
No 346
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=64.92 E-value=6.4 Score=41.91 Aligned_cols=60 Identities=13% Similarity=0.218 Sum_probs=44.2
Q ss_pred CCCccccccccccccCceec-CCCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCCccHHHHHHHHHH
Q 005598 97 IPSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANW 163 (689)
Q Consensus 97 ~p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~ 163 (689)
..+-+-||||.+.|.-|+.= .-||.-|-.|=. .-...||.|+.++.. +-++++-+.++..
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~----~~~~~CP~Cr~~~g~---~R~~amEkV~e~~ 105 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRT----KVSNKCPTCRLPIGN---IRCRAMEKVAEAV 105 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhh----hhcccCCcccccccc---HHHHHHHHHHHhc
Confidence 45668999999999999753 469999988843 223569999999884 3566666666543
No 347
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=64.84 E-value=19 Score=29.16 Aligned_cols=45 Identities=29% Similarity=0.493 Sum_probs=33.8
Q ss_pred hhhHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 005598 3 YEQTSSLIKEAIRDQVDGVAPSSEILVKVAESLSLRSNQEILIEAVALEK 52 (689)
Q Consensus 3 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~e~~~l~~ 52 (689)
+.+|++||.+.+.+. +.+|+ +.+|++.+|+.|......-+..|++
T Consensus 8 Q~~vL~~I~~~~~~~--G~~Pt---~rEIa~~~g~~S~~tv~~~L~~Le~ 52 (65)
T PF01726_consen 8 QKEVLEFIREYIEEN--GYPPT---VREIAEALGLKSTSTVQRHLKALER 52 (65)
T ss_dssp HHHHHHHHHHHHHHH--SS------HHHHHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc--CCCCC---HHHHHHHhCCCChHHHHHHHHHHHH
Confidence 468999999888874 45564 8899999999998888776666654
No 348
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=64.36 E-value=18 Score=43.55 Aligned_cols=114 Identities=13% Similarity=0.140 Sum_probs=84.6
Q ss_pred hhhccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCC---HHHHHHHHHHHHH
Q 005598 396 RADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSE---TKIQENAVTALLN 472 (689)
Q Consensus 396 ~~~l~~~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~---~~v~~~Al~aL~n 472 (689)
+..+..+....+.|++.|.-.+..+|..++..|..+...++.-...-+. -.+|.|+.+=.+.+ ..|++.|+.+|..
T Consensus 901 ~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~a 979 (1030)
T KOG1967|consen 901 QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNA 979 (1030)
T ss_pred HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHH
Confidence 3444566778899999999999999999999998887765443222221 46777777766554 5678999999999
Q ss_pred hhc-CCccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHH
Q 005598 473 LSI-NDNNKSAIANANAIEPLIHVLQTGSPEARENAAAT 510 (689)
Q Consensus 473 Ls~-~~~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~a 510 (689)
|.. -+...-.-....++..|+..|.+...-+|..|+.+
T Consensus 980 L~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 980 LTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred HhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 986 45555555566788899999988777788888765
No 349
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=62.50 E-value=1.9e+02 Score=29.59 Aligned_cols=135 Identities=19% Similarity=0.151 Sum_probs=78.7
Q ss_pred HHHHHH-hhcCCCHHHHHHHHHHHHHhhcCC-ccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHH
Q 005598 448 INILVD-MLHSSETKIQENAVTALLNLSIND-NNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG 525 (689)
Q Consensus 448 I~~Lv~-lL~s~~~~v~~~Al~aL~nLs~~~-~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~ 525 (689)
++.|+. +-+..+++++...+.+|..++.+. .+... ++..|..+...+..+.+.-+...+..+-...+ +. +
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-r~--f 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKAND-RH--F 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCc-hH--H
Confidence 344444 444578899999999999998766 33332 34455566666666665555555555432111 11 0
Q ss_pred hhCChHHHHHh--h------cCC--CHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-CC-ChHHHHHHHHHHH
Q 005598 526 RSGAIGPLVDL--L------GNG--TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DP-AAGMVDKAVAVLA 593 (689)
Q Consensus 526 ~~g~I~~Lv~L--L------~~~--~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-~~-~~~v~e~Al~~L~ 593 (689)
+.+..++.. + .++ ..+.....+.++..+|...++ .....++.+..+| +. +..+...++..|.
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~ 147 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALA 147 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 334444433 1 111 234444555677778775555 3445677777777 44 4455677888999
Q ss_pred HHh
Q 005598 594 NLA 596 (689)
Q Consensus 594 nLa 596 (689)
.||
T Consensus 148 ~Lc 150 (234)
T PF12530_consen 148 PLC 150 (234)
T ss_pred HHH
Confidence 988
No 350
>PRK12495 hypothetical protein; Provisional
Probab=62.47 E-value=17 Score=36.54 Aligned_cols=32 Identities=19% Similarity=0.410 Sum_probs=21.5
Q ss_pred CCCccccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCC
Q 005598 97 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 147 (689)
Q Consensus 97 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~ 147 (689)
.+..+.|+.|+..+- .-.|.+| ||.|+..+..
T Consensus 39 tmsa~hC~~CG~PIp----a~pG~~~---------------Cp~CQ~~~~~ 70 (226)
T PRK12495 39 TMTNAHCDECGDPIF----RHDGQEF---------------CPTCQQPVTE 70 (226)
T ss_pred ccchhhcccccCccc----CCCCeeE---------------CCCCCCcccc
Confidence 467899999997442 2244444 8999876654
No 351
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=61.47 E-value=2.8e+02 Score=31.36 Aligned_cols=142 Identities=12% Similarity=0.092 Sum_probs=80.6
Q ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHH-HHHhhhhchHHHHHHH
Q 005598 489 IEPLIHVLQT-GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAAT-ALFNLSIYHENKARIV 566 (689)
Q Consensus 489 l~~Lv~lL~s-~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~-aL~nLs~~~~n~~~lv 566 (689)
+..++++|.. .+...+..|+++|..++.....+-.=...-+|..+++.-.+....+...|.. ++.-|+...+-+
T Consensus 331 L~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~---- 406 (516)
T KOG2956|consen 331 LLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ---- 406 (516)
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh----
Confidence 4556777776 5667788888888887654332211111234455555555555655555554 444444433322
Q ss_pred HhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHH--hcCcHHHHHHHhccCCHHHHHHHHHHHHHHhh
Q 005598 567 QAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIG--QENGIPVLVEVVELGSARGKENAAAALLQLCT 638 (689)
Q Consensus 567 ~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~--~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~ 638 (689)
.|..+..++ ..+....-.++..+..|+..- ..+.+. -..+.|.+++--.+.+..++..|+.+|..+..
T Consensus 407 ---~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l-~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 407 ---CIVNISPLILTADEPRAVAVIKMLTKLFERL-SAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred ---HHHHHhhHHhcCcchHHHHHHHHHHHHHhhc-CHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 122222322 233333334444555554422 223332 24678999999999999999999999988764
No 352
>PLN02436 cellulose synthase A
Probab=61.15 E-value=5.5 Score=48.74 Aligned_cols=46 Identities=13% Similarity=0.225 Sum_probs=37.2
Q ss_pred cccccccc-----cccCceec--CCCccccHHHHHHHHhcCCCCCCCCCCcCC
Q 005598 101 FCCPLSLE-----LMTDPVIV--ASGQTYERAFIKKWIDLGLFVCPKTRQTLA 146 (689)
Q Consensus 101 f~CpI~~~-----lm~dPV~~--~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~ 146 (689)
-.|.||++ ..-||.+. .||.-.||.|.+---++|+..||.|+.++.
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 47999985 35567775 489999999996667778888999998876
No 353
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=60.90 E-value=32 Score=39.57 Aligned_cols=101 Identities=19% Similarity=0.173 Sum_probs=71.9
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHH
Q 005598 446 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG 525 (689)
Q Consensus 446 g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~ 525 (689)
|.+..+++-+.+.+..|+...+.+|..++..........-.+.+..|.+-+-.....+|..|+.+|..+-....+-+.
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen-- 168 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN-- 168 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH--
Confidence 678888888899999999999999998875544444555667777777777677888999999999877432222111
Q ss_pred hhCChHHHHHhhcCC-CHHHHHHHHH
Q 005598 526 RSGAIGPLVDLLGNG-TPRGKKDAAT 550 (689)
Q Consensus 526 ~~g~I~~Lv~LL~~~-~~~v~~~Al~ 550 (689)
.....|+.+++.. +.++++.|+.
T Consensus 169 --~~~n~l~~~vqnDPS~EVRr~all 192 (885)
T COG5218 169 --RIVNLLKDIVQNDPSDEVRRLALL 192 (885)
T ss_pred --HHHHHHHHHHhcCcHHHHHHHHHH
Confidence 2234666777654 6777776554
No 354
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=60.68 E-value=76 Score=36.55 Aligned_cols=97 Identities=20% Similarity=0.183 Sum_probs=61.1
Q ss_pred CCHHHHHHH-HcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCC-CHHHHHHHHHHHHhhhhchHHHHH
Q 005598 487 NAIEPLIHV-LQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHENKAR 564 (689)
Q Consensus 487 g~l~~Lv~l-L~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~~~n~~~ 564 (689)
+++..|+.+ .++++.++|..|+-+|.-++..+. ..+...|++|... +..++...+.+|.-.|.....+.
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~- 621 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV- 621 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeEecCc--------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-
Confidence 566667766 667888999999988888776533 5667777777644 67777777777766655433222
Q ss_pred HHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC
Q 005598 565 IVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT 597 (689)
Q Consensus 565 lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~ 597 (689)
++..|-.++ +...-+...|+-+++.+..
T Consensus 622 -----a~diL~~L~~D~~dfVRQ~AmIa~~mIl~ 650 (926)
T COG5116 622 -----ATDILEALMYDTNDFVRQSAMIAVGMILM 650 (926)
T ss_pred -----HHHHHHHHhhCcHHHHHHHHHHHHHHHHh
Confidence 223333334 4444555666666666544
No 355
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=60.68 E-value=3 Score=42.39 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=29.3
Q ss_pred cCce-ecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCCcc
Q 005598 111 TDPV-IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 153 (689)
Q Consensus 111 ~dPV-~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~pn 153 (689)
.||. ++.|+|.||-.|...-.. ..||.|++++....+.+|
T Consensus 15 ~~~f~LTaC~HvfC~~C~k~~~~---~~C~lCkk~ir~i~l~~s 55 (233)
T KOG4739|consen 15 QDPFFLTACRHVFCEPCLKASSP---DVCPLCKKSIRIIQLNRS 55 (233)
T ss_pred CCceeeeechhhhhhhhcccCCc---cccccccceeeeeecccc
Confidence 5665 469999999988654332 269999999876666555
No 356
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=60.40 E-value=60 Score=37.33 Aligned_cols=99 Identities=13% Similarity=0.116 Sum_probs=65.2
Q ss_pred hhCChHHHHHh-hcCCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-CCChH-HHHHHHHHHHHHhCCchhH
Q 005598 526 RSGAIGPLVDL-LGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAG-MVDKAVAVLANLATIPDGR 602 (689)
Q Consensus 526 ~~g~I~~Lv~L-L~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-~~~~~-v~e~Al~~L~nLa~~~e~r 602 (689)
+.|++..|++. +.+++.+++++|+.||.-+|..+. ..+...+++| ++... +....+-+|...|.....+
T Consensus 549 n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~ 620 (926)
T COG5116 549 NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK 620 (926)
T ss_pred cchhHhhhheeecccCchHHHHHHHHheeeeEecCc--------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH
Confidence 34778888888 677899999999999998887544 3556677777 33333 3344444555555433222
Q ss_pred HHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhh
Q 005598 603 VAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 638 (689)
Q Consensus 603 ~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~ 638 (689)
. ++..|-.++....+-++..|+-++..+..
T Consensus 621 ~------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~ 650 (926)
T COG5116 621 V------ATDILEALMYDTNDFVRQSAMIAVGMILM 650 (926)
T ss_pred H------HHHHHHHHhhCcHHHHHHHHHHHHHHHHh
Confidence 2 24556666677788888888887776543
No 357
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=60.18 E-value=28 Score=40.84 Aligned_cols=181 Identities=15% Similarity=0.126 Sum_probs=100.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 005598 404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 483 (689)
Q Consensus 404 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i 483 (689)
..++.|++++++.+..++..-+..+-.+... -...+.+.-++|.+..-+...++.+++.++..+..|+---..+ .
T Consensus 330 ~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~ 404 (690)
T KOG1243|consen 330 RIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--N 404 (690)
T ss_pred chhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--h
Confidence 4677777888777766665555555444432 2223445567777777777778888888887777764211111 1
Q ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhC-ChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHH
Q 005598 484 ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSG-AIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 562 (689)
Q Consensus 484 ~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g-~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~ 562 (689)
.....+..|.++-.+....+|-+..-+|..++....... ..+ .+.+..+-+++.-...+.+++.+++.....-+..
T Consensus 405 Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~ 481 (690)
T KOG1243|consen 405 LNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQS 481 (690)
T ss_pred hcHHHHHHHHhhCccccCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhcccccchh
Confidence 111223333332222334566666666666654322111 222 2233444566776778888888887766544333
Q ss_pred HHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHH
Q 005598 563 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLAN 594 (689)
Q Consensus 563 ~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~n 594 (689)
. +...+++.+.-+. +++..+...|..++..
T Consensus 482 ~--va~kIlp~l~pl~vd~e~~vr~~a~~~i~~ 512 (690)
T KOG1243|consen 482 E--VANKILPSLVPLTVDPEKTVRDTAEKAIRQ 512 (690)
T ss_pred h--hhhhccccccccccCcccchhhHHHHHHHH
Confidence 2 4455667776665 6666666666655543
No 358
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=58.87 E-value=3.9e+02 Score=32.12 Aligned_cols=230 Identities=13% Similarity=0.063 Sum_probs=115.8
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHH
Q 005598 446 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG 525 (689)
Q Consensus 446 g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~ 525 (689)
=.++.++..++++.--++..||..+..+..+ .+....-..+.+.....|++.+..++..|+-||.-+..++..-..+.
T Consensus 460 fiv~hv~P~f~s~ygfL~Srace~is~~eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~s 537 (970)
T COG5656 460 FIVNHVIPAFRSNYGFLKSRACEFISTIEED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFS 537 (970)
T ss_pred HHHHHhhHhhcCcccchHHHHHHHHHHHHHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHH
Confidence 3566677777887777888999999888533 33333333456666777888888899999999888776665555554
Q ss_pred hh--CChHHHHHhhcCCCHHHHHHHHHHHHh-hhhc-hHHHHHHHHhCcHHHHH----HhcCCC-------hHHHHHHHH
Q 005598 526 RS--GAIGPLVDLLGNGTPRGKKDAATALFN-LSIY-HENKARIVQAGAVKHLV----DLMDPA-------AGMVDKAVA 590 (689)
Q Consensus 526 ~~--g~I~~Lv~LL~~~~~~v~~~Al~aL~n-Ls~~-~~n~~~lv~~G~v~~Lv----~LL~~~-------~~v~e~Al~ 590 (689)
+. +.++.|+.|-..-+.+....++..+.. .+.. ..-... +....+...+ .+++.. .+-...|.+
T Consensus 538 ahVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~e-La~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasG 616 (970)
T COG5656 538 AHVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPE-LAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASG 616 (970)
T ss_pred hhhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHH-HHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHH
Confidence 43 555666655554444444444333321 1110 000001 1112222222 233211 122335666
Q ss_pred HHHHHhC---CchhHHHHHh---cCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCC
Q 005598 591 VLANLAT---IPDGRVAIGQ---ENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGT 664 (689)
Q Consensus 591 ~L~nLa~---~~e~r~~i~~---~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~ 664 (689)
+|..+.. +-+++..+.+ ....|.+--.|++.-...-..|+.+|-++.....+.-.. --|+.+.|.+++....
T Consensus 617 iL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~pi--mwgi~Ell~~~l~~~~ 694 (970)
T COG5656 617 ILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIEPI--MWGIFELLLNLLIDEI 694 (970)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhhh--hhHHHHHHHhcccccc
Confidence 6665433 3444444432 233444444555555556666777776655433211111 1234444444444333
Q ss_pred H-HHHHHHHHHHHHhhc
Q 005598 665 P-RAKEKAQALLSYFRN 680 (689)
Q Consensus 665 ~-~vr~~A~~lL~~L~~ 680 (689)
. .--+.++-+|.++--
T Consensus 695 t~~y~ee~~~al~nfit 711 (970)
T COG5656 695 TAVYSEEVADALDNFIT 711 (970)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 2 223344445555443
No 359
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=58.71 E-value=46 Score=30.92 Aligned_cols=72 Identities=17% Similarity=0.155 Sum_probs=58.0
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHHhhCCH-hhHHHHHhCCChHHHHHhhhcCC--HHHHHHHHHHHHHhhcC
Q 005598 610 GIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVALSQSGT--PRAKEKAQALLSYFRNQ 681 (689)
Q Consensus 610 ~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~-~~~~~lv~~g~i~~L~~LL~~~~--~~vr~~A~~lL~~L~~~ 681 (689)
++..|.+.|.++++.++..|+.+|-.|..+++ .....+.....+..|..++.... +.+++++..++..-...
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 46778888999999999999999999999864 46677777788889998887754 34899998887766553
No 360
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=58.42 E-value=23 Score=33.16 Aligned_cols=72 Identities=25% Similarity=0.219 Sum_probs=57.4
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHHhhCCH-hhHHHHHhCCChHHHHHhhhcCC-HH---HHHHHHHHHHHhhcC
Q 005598 610 GIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVALSQSGT-PR---AKEKAQALLSYFRNQ 681 (689)
Q Consensus 610 ~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~-~~~~~lv~~g~i~~L~~LL~~~~-~~---vr~~A~~lL~~L~~~ 681 (689)
++..|.+-|.++++.++..|+.+|-.|..+++ .....+.....+..|..++.... .. +++++..+|......
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 46778888999999999999999999999985 55566666678888999887653 33 899999888766543
No 361
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=58.29 E-value=3.1e+02 Score=34.21 Aligned_cols=217 Identities=13% Similarity=0.082 Sum_probs=114.3
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHhcccCchhHHHH
Q 005598 446 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGS-PEARENAAATLFSLSVIEDNKIKI 524 (689)
Q Consensus 446 g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~s~~-~~~~~~Aa~aL~nLs~~~~~k~~I 524 (689)
+++..|+..|++.+..|+-.|+..++.++.... .. ....++..++.++.-.+ ......|+-+|..|+...--....
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp-~~--Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~ 417 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP-PE--LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL 417 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc-HH--HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence 577788888888888999999999999874432 11 12235666666555443 566777888888776321100000
Q ss_pred HhhCChHHHHHhhcC--------CCHHHHHHHHHHHHhhhhc-hHH-HHHHHHhCcHHHHHH-h-cCCChHHHHHHHHHH
Q 005598 525 GRSGAIGPLVDLLGN--------GTPRGKKDAATALFNLSIY-HEN-KARIVQAGAVKHLVD-L-MDPAAGMVDKAVAVL 592 (689)
Q Consensus 525 ~~~g~I~~Lv~LL~~--------~~~~v~~~Al~aL~nLs~~-~~n-~~~lv~~G~v~~Lv~-L-L~~~~~v~e~Al~~L 592 (689)
-..+++.+++-|.- ....++.+|+-+++.++.. ..+ -..++ ......|+. . ++.+-.....|.+++
T Consensus 418 -l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l-~~L~s~LL~~AlFDrevncRRAAsAAl 495 (1133)
T KOG1943|consen 418 -LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVL-QSLASALLIVALFDREVNCRRAASAAL 495 (1133)
T ss_pred -HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHH-HHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence 01344555544431 1356788888888888772 222 11122 222223222 2 366666667776666
Q ss_pred HHHhCCchhHHHHHhcCcHHHHHHHhccCC---HHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHh-hhcCCHHHH
Q 005598 593 ANLATIPDGRVAIGQENGIPVLVEVVELGS---ARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVAL-SQSGTPRAK 668 (689)
Q Consensus 593 ~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s---~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~L-L~~~~~~vr 668 (689)
-.... +.|-+|.=+.++...+ -..+.++-..|..-....+.++..+++ .|+.- +.+=+..+|
T Consensus 496 qE~VG---------R~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~HWd~~ir 561 (1133)
T KOG1943|consen 496 QENVG---------RQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCHWDVKIR 561 (1133)
T ss_pred HHHhc---------cCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhcccccccHHHH
Confidence 54332 2333333333333221 222333333333323333333333332 22221 333368899
Q ss_pred HHHHHHHHHhhcC
Q 005598 669 EKAQALLSYFRNQ 681 (689)
Q Consensus 669 ~~A~~lL~~L~~~ 681 (689)
+-|++.|..|..+
T Consensus 562 elaa~aL~~Ls~~ 574 (1133)
T KOG1943|consen 562 ELAAYALHKLSLT 574 (1133)
T ss_pred HHHHHHHHHHHHh
Confidence 9999988887654
No 362
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=58.28 E-value=51 Score=29.14 Aligned_cols=73 Identities=21% Similarity=0.225 Sum_probs=54.9
Q ss_pred hhccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHH
Q 005598 397 ADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTAL 470 (689)
Q Consensus 397 ~~l~~~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL 470 (689)
.++......+..|++.++......+..++..|..+++ ++.....+.+.|++..|-++-..-++..+...-.++
T Consensus 23 ~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 23 EDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3444557788999999998887788999999999988 567778888889999977766555665555444343
No 363
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=58.13 E-value=25 Score=32.90 Aligned_cols=72 Identities=21% Similarity=0.200 Sum_probs=57.8
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-cccHHHHHhcCcHHHHHHhhcCC-CHH---HHHHHHHHHHHhh
Q 005598 403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHN-MDNRMVIANCGAINILVDMLHSS-ETK---IQENAVTALLNLS 474 (689)
Q Consensus 403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s-~~nr~~i~~~g~I~~Lv~lL~s~-~~~---v~~~Al~aL~nLs 474 (689)
...+..|-+.|+++++.+|..|+..|-.+.+.. +..+..+....++..|..++... ... |++.++..|...+
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 568889999999999999999999999998865 45566666678899999988643 333 8888888887775
No 364
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.06 E-value=19 Score=43.20 Aligned_cols=37 Identities=14% Similarity=0.311 Sum_probs=27.3
Q ss_pred CCCccccccccc-cccCcee-cCCCccccHHHHHHHHhc
Q 005598 97 IPSDFCCPLSLE-LMTDPVI-VASGQTYERAFIKKWIDL 133 (689)
Q Consensus 97 ~p~~f~CpI~~~-lm~dPV~-~~~G~ty~r~~I~~~l~~ 133 (689)
+-..=.|-+|.. ++..|.. .+|||.|-|.||+++...
T Consensus 814 ~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~~ 852 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVLS 852 (911)
T ss_pred ecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHHc
Confidence 444556888874 4455765 699999999999998654
No 365
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.06 E-value=3.3e+02 Score=32.81 Aligned_cols=64 Identities=23% Similarity=0.113 Sum_probs=47.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 005598 611 IPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 679 (689)
Q Consensus 611 v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~ 679 (689)
.+.+-.++.+..+.+...|+.++.++......... -++..|..++.+...-+|-+|..+|.-+.
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvA 310 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVA 310 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 45555556778899999999999988776553221 26778888888888888888888887654
No 366
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=57.70 E-value=34 Score=31.47 Aligned_cols=72 Identities=14% Similarity=0.169 Sum_probs=51.6
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhh-HHHHHh-CCChHHHHHhhh-----cCC---HHHHHHHHHHHHHhh
Q 005598 610 GIPVLVEVVELGSARGKENAAAALLQLCTNSSRF-CSMVLQ-EGAVPPLVALSQ-----SGT---PRAKEKAQALLSYFR 679 (689)
Q Consensus 610 ~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~-~~~lv~-~g~i~~L~~LL~-----~~~---~~vr~~A~~lL~~L~ 679 (689)
++..|.+-|...++-++..|..+|-.||..+... +..+.+ ...|..+...-. .|+ ..+|..|.+++..+-
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 4577888888889999999999999999987643 333333 334555555443 232 469999999999987
Q ss_pred cC
Q 005598 680 NQ 681 (689)
Q Consensus 680 ~~ 681 (689)
..
T Consensus 119 ~~ 120 (122)
T cd03572 119 SY 120 (122)
T ss_pred cc
Confidence 64
No 367
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=57.29 E-value=1.9e+02 Score=37.21 Aligned_cols=107 Identities=13% Similarity=0.156 Sum_probs=70.6
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcc-cCchhHHHH
Q 005598 446 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLS-VIEDNKIKI 524 (689)
Q Consensus 446 g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs-~~~~~k~~I 524 (689)
+.+..++..|..+-..++-.|+.+|..+..-+. ..+.....-..+..-+.+....+|+.|+..+.... ..++.-..+
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp--~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy 893 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADP--SVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQY 893 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcCh--HhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH
Confidence 567788888888888999999999998853221 11112223334445566777889999999988543 233322222
Q ss_pred HhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhch
Q 005598 525 GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH 559 (689)
Q Consensus 525 ~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~ 559 (689)
...+..-+.+....+++.++..|+.+|...
T Consensus 894 -----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~ 923 (1692)
T KOG1020|consen 894 -----YDQIIERILDTGVSVRKRVIKILRDICEET 923 (1692)
T ss_pred -----HHHHHhhcCCCchhHHHHHHHHHHHHHHhC
Confidence 233444445667889999999999998843
No 368
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=56.88 E-value=9.2 Score=47.13 Aligned_cols=43 Identities=30% Similarity=0.508 Sum_probs=31.9
Q ss_pred CCCCCCcccccccc--ccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCC
Q 005598 94 PVPIPSDFCCPLSL--ELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT 148 (689)
Q Consensus 94 ~~~~p~~f~CpI~~--~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~ 148 (689)
-.++|.++.||=|+ +.+.|+ ..-+|.-. -...||.|+.|+..+
T Consensus 908 VNPL~PHY~Cp~Cky~Ef~~d~-svgsGfDL-----------pdK~CPkCg~pl~kD 952 (1444)
T COG2176 908 VNPLPPHYLCPECKYSEFIDDG-SVGSGFDL-----------PDKDCPKCGTPLKKD 952 (1444)
T ss_pred cCCCCccccCCCCceeeeecCC-CcCCCCCC-----------CCCCCCcCCCccccC
Confidence 45789999999998 677777 44455433 346799999998654
No 369
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=56.63 E-value=7.1 Score=47.93 Aligned_cols=46 Identities=13% Similarity=0.186 Sum_probs=37.0
Q ss_pred ccccccccc-----ccCceec--CCCccccHHHHHHHHhcCCCCCCCCCCcCC
Q 005598 101 FCCPLSLEL-----MTDPVIV--ASGQTYERAFIKKWIDLGLFVCPKTRQTLA 146 (689)
Q Consensus 101 f~CpI~~~l-----m~dPV~~--~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~ 146 (689)
=.|.||++= .-||.+. .||.-.||.|.+==-++|+..||.|+.++.
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 379999863 5567775 599999999996667778888999998875
No 370
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=56.18 E-value=7.8 Score=42.21 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=25.8
Q ss_pred ecCCCccccH-----HHHHHHHhcC------------CCCCCCCCCcCCCCC
Q 005598 115 IVASGQTYER-----AFIKKWIDLG------------LFVCPKTRQTLAHTT 149 (689)
Q Consensus 115 ~~~~G~ty~r-----~~I~~~l~~~------------~~~cP~t~~~l~~~~ 149 (689)
.-+|+.-||| +|+-+||... ..+||.||.++...|
T Consensus 303 ~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 303 EPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred CCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 3467777765 7999999652 246999999987654
No 371
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=56.10 E-value=1.4e+02 Score=35.29 Aligned_cols=129 Identities=14% Similarity=0.076 Sum_probs=89.5
Q ss_pred hCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchhHHH
Q 005598 527 SGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVA 604 (689)
Q Consensus 527 ~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~r~~ 604 (689)
..+++.|..-+++.+..++..++..+-.++..-+ ..+++.-++|.|..+. .....++..++.+++.+. +.
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~------q~ 459 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI------QR 459 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH------HH
Confidence 3456777777788889999999999888776433 5567777888888875 456677778888888877 22
Q ss_pred HHhcCcHHHHHHH---hccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCC
Q 005598 605 IGQENGIPVLVEV---VELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGT 664 (689)
Q Consensus 605 i~~~g~v~~Lv~l---L~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~ 664 (689)
+-...+++.+.-+ .+..++......+.+..++....... ..+..+.++|.++-+...+.
T Consensus 460 lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 460 LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccc
Confidence 3333444444444 45567888887777777776655433 45556788888888877664
No 372
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=55.61 E-value=2.2e+02 Score=33.39 Aligned_cols=128 Identities=18% Similarity=0.151 Sum_probs=69.8
Q ss_pred HHHHHHhhcC----CCHHHHHHHHHHHHHhh----cCC------ccHHHHHHcCCHHHHHHHHc----CCCHHHHHHHHH
Q 005598 448 INILVDMLHS----SETKIQENAVTALLNLS----IND------NNKSAIANANAIEPLIHVLQ----TGSPEARENAAA 509 (689)
Q Consensus 448 I~~Lv~lL~s----~~~~v~~~Al~aL~nLs----~~~------~~k~~i~~~g~l~~Lv~lL~----s~~~~~~~~Aa~ 509 (689)
+..|..|+.+ .+..+...|+.+++.|. ... ...........++.|...|. .++.+-+..++.
T Consensus 433 l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk 512 (618)
T PF01347_consen 433 LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLK 512 (618)
T ss_dssp HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHH
Confidence 4445555543 34556666777776664 221 11111222345555555554 455677778888
Q ss_pred HHHhcccCchhHHHHHhhCChHHHHHhhcCC---CHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-C--CChH
Q 005598 510 TLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG---TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-D--PAAG 583 (689)
Q Consensus 510 aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~---~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-~--~~~~ 583 (689)
+|.|+- ....++.|..++... ...++..|+.||..++..... .+.+.|+.++ + .+.+
T Consensus 513 aLgN~g----------~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~-------~v~~~l~~I~~n~~e~~E 575 (618)
T PF01347_consen 513 ALGNLG----------HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPE-------KVREILLPIFMNTTEDPE 575 (618)
T ss_dssp HHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HH-------HHHHHHHHHHH-TTS-HH
T ss_pred HhhccC----------CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcH-------HHHHHHHHHhcCCCCChh
Confidence 888873 235788888888766 578888999999987553332 2335666666 2 3344
Q ss_pred HHHHHHHHH
Q 005598 584 MVDKAVAVL 592 (689)
Q Consensus 584 v~e~Al~~L 592 (689)
++..|+.+|
T Consensus 576 vRiaA~~~l 584 (618)
T PF01347_consen 576 VRIAAYLIL 584 (618)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444333
No 373
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=54.93 E-value=9.4 Score=39.99 Aligned_cols=43 Identities=23% Similarity=0.580 Sum_probs=34.7
Q ss_pred ccccccccccc----cCceecCCCccccHHHHHHHHhcCCCCCCCCCC
Q 005598 100 DFCCPLSLELM----TDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQ 143 (689)
Q Consensus 100 ~f~CpI~~~lm----~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~ 143 (689)
++.||||.+.+ .+|..++|||+.-..|.++....+ .+||.|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 45699998654 567789999998877877777777 88999965
No 374
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=52.94 E-value=3.4e+02 Score=32.64 Aligned_cols=102 Identities=22% Similarity=0.222 Sum_probs=71.5
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHH
Q 005598 528 GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAI 605 (689)
Q Consensus 528 g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i 605 (689)
.+|..|..+-.+.-..++..++.++++|..+.+-.. ..++..||.-| ++...+...|...|.+|.. +|..+..+
T Consensus 304 rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE----~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vv 379 (988)
T KOG2038|consen 304 RFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQE----NNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVV 379 (988)
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHH----HHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeeh
Confidence 567777777777778999999999999887654433 23455677777 7788888888888877654 77655443
Q ss_pred HhcCcHHHHHHHhcc--CCHHHHHHHHHHHHHHhh
Q 005598 606 GQENGIPVLVEVVEL--GSARGKENAAAALLQLCT 638 (689)
Q Consensus 606 ~~~g~v~~Lv~lL~s--~s~~~~e~Av~aL~~L~~ 638 (689)
+..+..++.+ .+.+++.+|+..|-++..
T Consensus 380 -----i~EIer~~FRpn~~~ra~Yyav~fLnQ~~L 409 (988)
T KOG2038|consen 380 -----IDEIERLAFRPNVSERAHYYAVIFLNQMKL 409 (988)
T ss_pred -----HHHHHHHHcccCccccceeehhhhhhhhHh
Confidence 3555666644 467778888888876543
No 375
>PF14353 CpXC: CpXC protein
Probab=52.80 E-value=11 Score=34.73 Aligned_cols=48 Identities=17% Similarity=0.278 Sum_probs=33.1
Q ss_pred ccccccccccccCceecCCCccccHHHHHHHHhcC--CCCCCCCCCcCCC
Q 005598 100 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLG--LFVCPKTRQTLAH 147 (689)
Q Consensus 100 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~--~~~cP~t~~~l~~ 147 (689)
+++||-|+..+.=.|-..-.-+-+....++-+... ..+||.||.....
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRL 50 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceec
Confidence 36899999988877765555556666666666432 2469999987543
No 376
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=52.78 E-value=1.9e+02 Score=33.58 Aligned_cols=100 Identities=17% Similarity=0.155 Sum_probs=69.3
Q ss_pred hCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHH
Q 005598 527 SGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAI 605 (689)
Q Consensus 527 ~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i 605 (689)
.|.+..+++-+.+.+..++..++..|.-++..-.-....+..|.+..|.+-+ +.++.+...|+.+|..+-.-..+-+
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee-- 167 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE-- 167 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH--
Confidence 3667777777778889999999999998877555555667788888888765 7788888899998887654221111
Q ss_pred HhcCcHHHHHHHhcc-CCHHHHHHHH
Q 005598 606 GQENGIPVLVEVVEL-GSARGKENAA 630 (689)
Q Consensus 606 ~~~g~v~~Lv~lL~s-~s~~~~e~Av 630 (689)
...+..|+.+++. ++.+++..|.
T Consensus 168 --n~~~n~l~~~vqnDPS~EVRr~al 191 (885)
T COG5218 168 --NRIVNLLKDIVQNDPSDEVRRLAL 191 (885)
T ss_pred --HHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1123466666665 4666766543
No 377
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=52.49 E-value=4.4 Score=40.89 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=35.5
Q ss_pred cccccccc-ccccCcee----cC-CCccccHHHHHHHHhcCCCCCC--CCCCcC
Q 005598 100 DFCCPLSL-ELMTDPVI----VA-SGQTYERAFIKKWIDLGLFVCP--KTRQTL 145 (689)
Q Consensus 100 ~f~CpI~~-~lm~dPV~----~~-~G~ty~r~~I~~~l~~~~~~cP--~t~~~l 145 (689)
+-.||||. +.+-.|=+ -| |=|..|-+|..+-|..|+..|| -|+.-|
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 45799998 55555643 24 9999999999999999999999 565433
No 378
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=52.49 E-value=97 Score=29.78 Aligned_cols=144 Identities=15% Similarity=0.070 Sum_probs=74.5
Q ss_pred hHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 005598 404 TQVRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 482 (689)
Q Consensus 404 ~~V~~Lv~~L~s~-~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~ 482 (689)
..+..|++.|+.+ ++.+++++++.|..|..-+|.....+....- .-. -...+...... .+.+....+ .-+.
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~--~~~--~~~~~~~~~~~---~l~~~~~~~-~~ee 81 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD--SKS--SENSNDESTDI---SLPMMGISP-SSEE 81 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC--ccc--cccccccchhh---HHhhccCCC-chHH
Confidence 5678888888854 6889999999999998777654443222100 000 00001111111 111111111 2223
Q ss_pred HHHcCCHHHHHHHHcCCCHH-HHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhh
Q 005598 483 IANANAIEPLIHVLQTGSPE-ARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL 555 (689)
Q Consensus 483 i~~~g~l~~Lv~lL~s~~~~-~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nL 555 (689)
..-.-++..|+++|++++.. -...++.++.++......+..-.-.-++|.++..++......++.-+.-|..|
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 33344677888888876533 33345555555543322222211235788888888876665555544444443
No 379
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=52.27 E-value=61 Score=31.80 Aligned_cols=54 Identities=20% Similarity=0.371 Sum_probs=33.9
Q ss_pred CCCccccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCC-ccHHHHHHHHHHHHH
Q 005598 97 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLI-PNYTVKALIANWCEL 166 (689)
Q Consensus 97 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~-pn~~l~~~i~~~~~~ 166 (689)
-+..|.||.|.-- .||+.+ +..+ ++||.||..|...+-. -...|.+.|+.....
T Consensus 110 ~~~~y~C~~~~~r----------~sfdeA-----~~~~-F~Cp~Cg~~L~~~d~s~~i~~l~~~i~~l~~~ 164 (176)
T COG1675 110 ENNYYVCPNCHVK----------YSFDEA-----MELG-FTCPKCGEDLEEYDSSEEIEELESELDELEEE 164 (176)
T ss_pred cCCceeCCCCCCc----------ccHHHH-----HHhC-CCCCCCCchhhhccchHHHHHHHHHHHHHHHH
Confidence 3678999988642 244433 3433 7899999998765433 334566666665443
No 380
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=52.03 E-value=61 Score=28.18 Aligned_cols=69 Identities=13% Similarity=0.124 Sum_probs=52.4
Q ss_pred HHHHhc-CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHh
Q 005598 573 HLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSR 642 (689)
Q Consensus 573 ~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~ 642 (689)
..+..| ++..+++-.++..|..|..... ...+....++..+...|+..++-+-.+|+..|..|+...++
T Consensus 7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 7 EALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 344444 6778889999999999988666 11222345677788888889999999999999999988763
No 381
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.79 E-value=1.8e+02 Score=34.53 Aligned_cols=144 Identities=16% Similarity=0.108 Sum_probs=87.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhccc--Cchh----HHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHH
Q 005598 490 EPLIHVLQTGSPEARENAAATLFSLSV--IEDN----KIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKA 563 (689)
Q Consensus 490 ~~Lv~lL~s~~~~~~~~Aa~aL~nLs~--~~~~----k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~ 563 (689)
+.|.+-|+..+..+|.+|+.++.++-- +++. ...+.+ .-...|.+||+++.+.++..|..=+..... --+
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s---~fW 252 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITS---KFW 252 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHH---HHH
Confidence 345566778899999999999998843 3332 223333 346789999999999888877665544332 123
Q ss_pred HHHHhCcHHHHHHhc------CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 005598 564 RIVQAGAVKHLVDLM------DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLC 637 (689)
Q Consensus 564 ~lv~~G~v~~Lv~LL------~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~ 637 (689)
.++=...+..|+.-+ +...++.-..+..|-.++.++.....+- -++|.|-..|...+..++-.++..|..+-
T Consensus 253 e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le--~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 253 EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLE--QLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHH--HHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 333333333333322 2334455555666666666554432221 23456666677788899888888887765
Q ss_pred hC
Q 005598 638 TN 639 (689)
Q Consensus 638 ~~ 639 (689)
..
T Consensus 331 ~v 332 (1005)
T KOG1949|consen 331 AV 332 (1005)
T ss_pred hh
Confidence 43
No 382
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=50.39 E-value=38 Score=32.56 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=23.4
Q ss_pred CCCccccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCC
Q 005598 97 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT 148 (689)
Q Consensus 97 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~ 148 (689)
=+..|.||-|..- .|| .+.+. .+++||.||.+|...
T Consensus 106 ~~~~Y~Cp~c~~r----------~tf-----~eA~~-~~F~Cp~Cg~~L~~~ 141 (158)
T TIGR00373 106 NNMFFICPNMCVR----------FTF-----NEAME-LNFTCPRCGAMLDYL 141 (158)
T ss_pred CCCeEECCCCCcE----------eeH-----HHHHH-cCCcCCCCCCEeeec
Confidence 4678999987621 122 22222 358899999998764
No 383
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=50.34 E-value=7.7 Score=41.93 Aligned_cols=44 Identities=16% Similarity=0.407 Sum_probs=35.0
Q ss_pred Ccccccccccccc--Cce--ecCCCccccHHHHHHHHhc-CCCCCCCCC
Q 005598 99 SDFCCPLSLELMT--DPV--IVASGQTYERAFIKKWIDL-GLFVCPKTR 142 (689)
Q Consensus 99 ~~f~CpI~~~lm~--dPV--~~~~G~ty~r~~I~~~l~~-~~~~cP~t~ 142 (689)
-++.|-.|++..- +-- -+||.|.|--.|+.+++.+ +..+||.||
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Cr 412 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCR 412 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHH
Confidence 4688999998753 221 3799999999999999975 456799998
No 384
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=49.94 E-value=1.3e+02 Score=33.40 Aligned_cols=130 Identities=17% Similarity=0.126 Sum_probs=75.1
Q ss_pred HHHHHHHcCCC-HHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhc----------CCCHHHHHHHHHHHHhhhhc
Q 005598 490 EPLIHVLQTGS-PEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG----------NGTPRGKKDAATALFNLSIY 558 (689)
Q Consensus 490 ~~Lv~lL~s~~-~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~----------~~~~~v~~~Al~aL~nLs~~ 558 (689)
..|+.+|.++. ...+...+.++..|+.+...-..+....-+..|+.+-+ ..+..+...++.+|+|+..+
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~ 127 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFH 127 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhc
Confidence 34566666655 33445556666666655443222222222233333321 11347888999999999985
Q ss_pred h-HHHHHHHHhCcHHHHHHhc-C-----CChHHHHHHHHHHHHHhC-CchhHHHH-HhcCcHHHHHHHhc
Q 005598 559 H-ENKARIVQAGAVKHLVDLM-D-----PAAGMVDKAVAVLANLAT-IPDGRVAI-GQENGIPVLVEVVE 619 (689)
Q Consensus 559 ~-~n~~~lv~~G~v~~Lv~LL-~-----~~~~v~e~Al~~L~nLa~-~~e~r~~i-~~~g~v~~Lv~lL~ 619 (689)
. ..+..+.+...+..+++.+ . -...+.-.-+.+|.-|.. ....|..+ .+.++++.+.++|.
T Consensus 128 Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~le 197 (532)
T KOG4464|consen 128 SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLE 197 (532)
T ss_pred cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhh
Confidence 5 5667778888888888876 1 112222233444444433 44666555 56788999999885
No 385
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=49.67 E-value=2 Score=35.26 Aligned_cols=42 Identities=21% Similarity=0.280 Sum_probs=22.5
Q ss_pred ccccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCC
Q 005598 100 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 147 (689)
Q Consensus 100 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~ 147 (689)
+..||.|... +.-..|+-+|-.|-..+... ..||.|+++|..
T Consensus 1 e~~CP~C~~~----L~~~~~~~~C~~C~~~~~~~--a~CPdC~~~Le~ 42 (70)
T PF07191_consen 1 ENTCPKCQQE----LEWQGGHYHCEACQKDYKKE--AFCPDCGQPLEV 42 (70)
T ss_dssp --B-SSS-SB----EEEETTEEEETTT--EEEEE--EE-TTT-SB-EE
T ss_pred CCcCCCCCCc----cEEeCCEEECccccccceec--ccCCCcccHHHH
Confidence 4689999985 33445788888886654332 359999998753
No 386
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.64 E-value=1.8e+02 Score=35.65 Aligned_cols=111 Identities=12% Similarity=0.076 Sum_probs=64.0
Q ss_pred CCHHHHHHHHc------C--CCHHHHHHHHHHHHhccc----CchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHh
Q 005598 487 NAIEPLIHVLQ------T--GSPEARENAAATLFSLSV----IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFN 554 (689)
Q Consensus 487 g~l~~Lv~lL~------s--~~~~~~~~Aa~aL~nLs~----~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~n 554 (689)
+.++-++.+|. . .++.-+.-|+.++.+|+. ....+. ..+.=.+..+...+++..--.+..||+.+..
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~-~mE~flv~hVfP~f~s~~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKS-QMEYFLVNHVFPEFQSPYGYLRARACWVLSQ 488 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHH-HHHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence 45555666665 1 235566677777777763 122222 2233445556666777777888999999999
Q ss_pred hhh-chHHHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCch
Q 005598 555 LSI-YHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPD 600 (689)
Q Consensus 555 Ls~-~~~n~~~lv~~G~v~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e 600 (689)
++. .-.+...+ ..++....+.| +.+-++.-.|+-+|..+..+.+
T Consensus 489 ~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~ 535 (1010)
T KOG1991|consen 489 FSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQE 535 (1010)
T ss_pred HHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcch
Confidence 884 21222111 22344444444 5556676677777777666444
No 387
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=49.55 E-value=34 Score=32.40 Aligned_cols=39 Identities=23% Similarity=0.492 Sum_probs=23.0
Q ss_pred CCccccccccccccCceecCCCccccHHHHHHHHh-cCCCCCCCCCCcCCCC
Q 005598 98 PSDFCCPLSLELMTDPVIVASGQTYERAFIKKWID-LGLFVCPKTRQTLAHT 148 (689)
Q Consensus 98 p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~-~~~~~cP~t~~~l~~~ 148 (689)
...|.||- ||++|.-.-...... .+...||.||.+|...
T Consensus 97 ~~~Y~Cp~------------C~~~y~~~ea~~~~d~~~~f~Cp~Cg~~l~~~ 136 (147)
T smart00531 97 NAYYKCPN------------CQSKYTFLEANQLLDMDGTFTCPRCGEELEED 136 (147)
T ss_pred CcEEECcC------------CCCEeeHHHHHHhcCCCCcEECCCCCCEEEEc
Confidence 56799995 445554222222211 2336799999998654
No 388
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=49.52 E-value=11 Score=46.32 Aligned_cols=46 Identities=13% Similarity=0.179 Sum_probs=37.1
Q ss_pred cccccccc-----cccCceec--CCCccccHHHHHHHHhcCCCCCCCCCCcCC
Q 005598 101 FCCPLSLE-----LMTDPVIV--ASGQTYERAFIKKWIDLGLFVCPKTRQTLA 146 (689)
Q Consensus 101 f~CpI~~~-----lm~dPV~~--~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~ 146 (689)
-.|.||++ ..-||.+. .||.-.||.|.+--.++|+..||.|+.++.
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 46999986 35567775 589999999996667778888999998876
No 389
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=46.54 E-value=9.5 Score=39.91 Aligned_cols=27 Identities=22% Similarity=0.495 Sum_probs=19.7
Q ss_pred cccccccccccc---CceecCCCccccHHH
Q 005598 100 DFCCPLSLELMT---DPVIVASGQTYERAF 126 (689)
Q Consensus 100 ~f~CpI~~~lm~---dPV~~~~G~ty~r~~ 126 (689)
.|.||+|+.-|. ..+.-+.||+||.+-
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~a~ 31 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDCAK 31 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCcccc
Confidence 389999999885 223446699998753
No 390
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=46.35 E-value=4.2e+02 Score=30.76 Aligned_cols=101 Identities=21% Similarity=0.181 Sum_probs=54.5
Q ss_pred cHHHHHHhhcCC----CHHHHHHHHHHHHHhh----cCCccHHHHHHcCCHHHHHHHHc----CCCHHHHHHHHHHHHhc
Q 005598 447 AINILVDMLHSS----ETKIQENAVTALLNLS----INDNNKSAIANANAIEPLIHVLQ----TGSPEARENAAATLFSL 514 (689)
Q Consensus 447 ~I~~Lv~lL~s~----~~~v~~~Al~aL~nLs----~~~~~k~~i~~~g~l~~Lv~lL~----s~~~~~~~~Aa~aL~nL 514 (689)
.+..|..++.++ ...+...|+.+++.|. .+............++.|...|. .++.+-+...+.+|.|+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 445555666542 3445566666666654 22211111112234555555443 23444455566666666
Q ss_pred ccCchhHHHHHhhCChHHHHHhhc-CC--CHHHHHHHHHHHHhhhh
Q 005598 515 SVIEDNKIKIGRSGAIGPLVDLLG-NG--TPRGKKDAATALFNLSI 557 (689)
Q Consensus 515 s~~~~~k~~I~~~g~I~~Lv~LL~-~~--~~~v~~~Al~aL~nLs~ 557 (689)
. ....++.|..++. .. ...++..|+++|..++.
T Consensus 474 g----------~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~ 509 (574)
T smart00638 474 G----------HPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAK 509 (574)
T ss_pred C----------ChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3 2245566666665 22 56889999999998765
No 391
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=45.72 E-value=16 Score=25.37 Aligned_cols=11 Identities=27% Similarity=0.637 Sum_probs=8.1
Q ss_pred CCCCCCCCCCc
Q 005598 134 GLFVCPKTRQT 144 (689)
Q Consensus 134 ~~~~cP~t~~~ 144 (689)
....||.|+.+
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 34579999875
No 392
>PHA02862 5L protein; Provisional
Probab=44.72 E-value=19 Score=33.85 Aligned_cols=46 Identities=11% Similarity=0.203 Sum_probs=32.2
Q ss_pred ccccccccccCceecCCCcc-----ccHHHHHHHHhcC-CCCCCCCCCcCCCC
Q 005598 102 CCPLSLELMTDPVIVASGQT-----YERAFIKKWIDLG-LFVCPKTRQTLAHT 148 (689)
Q Consensus 102 ~CpI~~~lm~dPV~~~~G~t-----y~r~~I~~~l~~~-~~~cP~t~~~l~~~ 148 (689)
.|=||.+-=.+. +-||..+ .-++|+++|+... ...||.|+.++..+
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 477888764444 4565432 5689999999754 45699999988653
No 393
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=44.58 E-value=16 Score=42.90 Aligned_cols=49 Identities=10% Similarity=-0.076 Sum_probs=38.4
Q ss_pred CCCCCCccccccccccccCce----ecC---CCccccHHHHHHHHhc-----CCCCCCCCC
Q 005598 94 PVPIPSDFCCPLSLELMTDPV----IVA---SGQTYERAFIKKWIDL-----GLFVCPKTR 142 (689)
Q Consensus 94 ~~~~p~~f~CpI~~~lm~dPV----~~~---~G~ty~r~~I~~~l~~-----~~~~cP~t~ 142 (689)
....++.-.|++|..-+.+|| +.+ |+|.+|-.||..|.+. .+..||+|.
T Consensus 90 DeK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~ 150 (1134)
T KOG0825|consen 90 DEKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCE 150 (1134)
T ss_pred CcccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHH
Confidence 445678899999999999977 345 8999999999999875 223477773
No 394
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=43.55 E-value=2.9e+02 Score=35.76 Aligned_cols=106 Identities=14% Similarity=0.166 Sum_probs=73.7
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHH--HHHHHHhCcHHHHHHhcCCChHHHHHHHHHHHHHhC-CchhHHH
Q 005598 528 GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN--KARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLAT-IPDGRVA 604 (689)
Q Consensus 528 g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n--~~~lv~~G~v~~Lv~LL~~~~~v~e~Al~~L~nLa~-~~e~r~~ 604 (689)
+.+..++..|.++...++..|+.||..+..-+.. ....+..|+-.. ++++...+.+.|+.+++.... .++.-..
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R---~~DssasVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGR---LNDSSASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHh---hccchhHHHHHHHHHHhhhhhccHHHHHH
Confidence 5777888888888899999999999999875442 123344444333 336777888999999886433 2322111
Q ss_pred HHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCH
Q 005598 605 IGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 641 (689)
Q Consensus 605 i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~ 641 (689)
....+.+-+...+-.++.+++.+|.-+|...+
T Consensus 893 -----yY~~i~erIlDtgvsVRKRvIKIlrdic~e~p 924 (1692)
T KOG1020|consen 893 -----YYDQIIERILDTGVSVRKRVIKILRDICEETP 924 (1692)
T ss_pred -----HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCC
Confidence 23445555566778899999999999998876
No 395
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=43.40 E-value=7.7e+02 Score=31.65 Aligned_cols=231 Identities=15% Similarity=0.084 Sum_probs=119.4
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCc--ccHHHHHhcCcHHHHHHh-hc------CC--CHHHHHHHHHHHH
Q 005598 403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNM--DNRMVIANCGAINILVDM-LH------SS--ETKIQENAVTALL 471 (689)
Q Consensus 403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~--~nr~~i~~~g~I~~Lv~l-L~------s~--~~~v~~~Al~aL~ 471 (689)
..++..|+..+-+..+++|.-++-.|+.+.+... -++..+ +.-++..|.-+ |. ++ ...|++..+++|.
T Consensus 76 ~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~l-ed~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~ 154 (1549)
T KOG0392|consen 76 LSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELL-EDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALG 154 (1549)
T ss_pred HHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHH-HHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHH
Confidence 4688999999999999999887777777765432 222221 11112211111 11 11 2457888888888
Q ss_pred HhhcCCccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHH--hhCChHHHHHhhcCCCHHHHHHHH
Q 005598 472 NLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG--RSGAIGPLVDLLGNGTPRGKKDAA 549 (689)
Q Consensus 472 nLs~~~~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~--~~g~I~~Lv~LL~~~~~~v~~~Al 549 (689)
.+..+..... ....+..+..++.....+++.-.+..+..... -.+..+. -.-+++..+..|.+.+..++..|+
T Consensus 155 ~~l~~~~~s~---~~~~~~il~q~~~q~~w~ir~Ggll~iky~~a--ir~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa 229 (1549)
T KOG0392|consen 155 AYLKHMDESL---IKETLDILLQMLRQPNWEIRHGGLLGIKYNVA--IRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAA 229 (1549)
T ss_pred HHHHhhhhHh---hHHHHHHHHHHHcCcchhheechHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHH
Confidence 7754322110 11235556666665544443333322222111 0001111 113456666677777888888888
Q ss_pred HHHHhhhhchH--HHHHH--HHhCcHHHHHHhcCCChHHHHHHHHHHHHHhCCchhHHHHH----hcCcHHHHHHHhccC
Q 005598 550 TALFNLSIYHE--NKARI--VQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIG----QENGIPVLVEVVELG 621 (689)
Q Consensus 550 ~aL~nLs~~~~--n~~~l--v~~G~v~~Lv~LL~~~~~v~e~Al~~L~nLa~~~e~r~~i~----~~g~v~~Lv~lL~s~ 621 (689)
.+|.-....-. ..+.| +-.-.+..|.++++ -..-.......|..++...+...... +.|.+|.+...+.+.
T Consensus 230 ~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~ldd-l~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~ 308 (1549)
T KOG0392|consen 230 QFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDD-LSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHT 308 (1549)
T ss_pred HHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhh-cchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHH
Confidence 88776655321 11111 11223333333332 11112233344555555443322221 246788888888777
Q ss_pred CHHHHHHHHHHHHHHhhCC
Q 005598 622 SARGKENAAAALLQLCTNS 640 (689)
Q Consensus 622 s~~~~e~Av~aL~~L~~~~ 640 (689)
=..++..++..+..+....
T Consensus 309 i~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 309 ISSVRRAALETLAMLLEAD 327 (1549)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 6777778888887776654
No 396
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=42.71 E-value=24 Score=33.79 Aligned_cols=48 Identities=15% Similarity=0.254 Sum_probs=34.0
Q ss_pred CccccccccccccCceecCCCc-----cccHHHHHHHHhcC-CCCCCCCCCcCCC
Q 005598 99 SDFCCPLSLELMTDPVIVASGQ-----TYERAFIKKWIDLG-LFVCPKTRQTLAH 147 (689)
Q Consensus 99 ~~f~CpI~~~lm~dPV~~~~G~-----ty~r~~I~~~l~~~-~~~cP~t~~~l~~ 147 (689)
.+-.|=||.+-.. +..-||.. ..=++|+++|+..+ ...||.|+.++..
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 4457889987643 44456543 24699999999865 4469999998754
No 397
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=42.56 E-value=1e+02 Score=33.30 Aligned_cols=61 Identities=20% Similarity=0.088 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhcccCchhHHHHHhhC--ChHHHHHhhcCC---CHHHHHHHHHHHHhhhhchHHHH
Q 005598 503 ARENAAATLFSLSVIEDNKIKIGRSG--AIGPLVDLLGNG---TPRGKKDAATALFNLSIYHENKA 563 (689)
Q Consensus 503 ~~~~Aa~aL~nLs~~~~~k~~I~~~g--~I~~Lv~LL~~~---~~~v~~~Al~aL~nLs~~~~n~~ 563 (689)
+|..|..++..+.........+...+ ++..|+++++.+ ...++..|+.+|..|+....-..
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~ 303 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCS 303 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHH
Confidence 56667777766666666666666654 999999999865 46888899999999988554333
No 398
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=42.54 E-value=1.9e+02 Score=27.75 Aligned_cols=143 Identities=16% Similarity=0.170 Sum_probs=70.1
Q ss_pred CCHHHHHHHHcCC-CHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHH
Q 005598 487 NAIEPLIHVLQTG-SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARI 565 (689)
Q Consensus 487 g~l~~Lv~lL~s~-~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~l 565 (689)
..++.|+.+|+++ +..+|..++.+|..|-.-|..+-...... ...-. -.......... .+.+... ...-...
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~-~~~~~--~~~~~~~~~~~---~l~~~~~-~~~~ee~ 82 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS-LDSKS--SENSNDESTDI---SLPMMGI-SPSSEEY 82 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc-CCccc--cccccccchhh---HHhhccC-CCchHHH
Confidence 3467788888876 58899999999999966555544421110 00000 00001111111 1111111 0112233
Q ss_pred HHhCcHHHHHHhc-CCC-hHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHH
Q 005598 566 VQAGAVKHLVDLM-DPA-AGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQL 636 (689)
Q Consensus 566 v~~G~v~~Lv~LL-~~~-~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L 636 (689)
.-.-++..|+.+| ++. ......++.++.++......+..-.-..++|.++..++...+..++.-..-|..|
T Consensus 83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3344667777777 322 1222344555555443221111111234688888888877777777655555544
No 399
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=41.63 E-value=1.7e+02 Score=31.96 Aligned_cols=103 Identities=17% Similarity=0.102 Sum_probs=63.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCC-------CHHHHHHHHHHHHHhhcC
Q 005598 404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-------ETKIQENAVTALLNLSIN 476 (689)
Q Consensus 404 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~-------~~~v~~~Al~aL~nLs~~ 476 (689)
.....+.+.+.+.+...+..|+..|+.=..- +..+|.|+.++... +..+....+.++..|..+
T Consensus 178 ~yf~~It~a~~~~~~~~r~~aL~sL~tD~gl----------~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N 247 (343)
T cd08050 178 LYFEEITEALVGSNEEKRREALQSLRTDPGL----------QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDN 247 (343)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhccCCCc----------hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcC
Confidence 4556666767666766666666665432211 23567777776432 455566666777777666
Q ss_pred CccHHHHHHcCCHHHHHHHHcC----------CCHHHHHHHHHHHHhccc
Q 005598 477 DNNKSAIANANAIEPLIHVLQT----------GSPEARENAAATLFSLSV 516 (689)
Q Consensus 477 ~~~k~~i~~~g~l~~Lv~lL~s----------~~~~~~~~Aa~aL~nLs~ 516 (689)
+.......-...++.++..|-. ....+|..|+.+|..++.
T Consensus 248 ~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~ 297 (343)
T cd08050 248 PNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICR 297 (343)
T ss_pred CCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHH
Confidence 6554433333467777765521 236799999999998874
No 400
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=41.14 E-value=2.4e+02 Score=33.56 Aligned_cols=106 Identities=18% Similarity=0.118 Sum_probs=73.0
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHH------hCcHHHHHHhc-CCChHHHHHHHHHHHHHhCCc---
Q 005598 530 IGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ------AGAVKHLVDLM-DPAAGMVDKAVAVLANLATIP--- 599 (689)
Q Consensus 530 I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~------~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~--- 599 (689)
+..++.+|.+.+-..+...+.++.|+...-....++++ +..+..|++-| +..+-...+|+.++..++.-+
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 45678888888888888888899998775444445555 23444444444 455666789999998887622
Q ss_pred -hhHHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCC
Q 005598 600 -DGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 640 (689)
Q Consensus 600 -e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~ 640 (689)
..|..+ +...+..|+..+.-++.+|+..+..|....
T Consensus 381 ~~~r~ev-----~~lv~r~lqDrss~VRrnaikl~SkLL~~H 417 (1128)
T COG5098 381 VGRRHEV-----IRLVGRRLQDRSSVVRRNAIKLCSKLLMRH 417 (1128)
T ss_pred cchHHHH-----HHHHHHHhhhhhHHHHHHHHHHHHHHHhcC
Confidence 234443 456667778888889999999888765544
No 401
>PLN02400 cellulose synthase
Probab=40.76 E-value=13 Score=45.71 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=36.5
Q ss_pred cccccccc-----cccCceec--CCCccccHHHHHHHHhcCCCCCCCCCCcCC
Q 005598 101 FCCPLSLE-----LMTDPVIV--ASGQTYERAFIKKWIDLGLFVCPKTRQTLA 146 (689)
Q Consensus 101 f~CpI~~~-----lm~dPV~~--~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~ 146 (689)
-.|.||++ ..-+|.+. .||.-.||.|.+==-++|+..||.|+.++.
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 47999986 34567775 589999999996556778888999998876
No 402
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.28 E-value=13 Score=41.40 Aligned_cols=69 Identities=17% Similarity=0.269 Sum_probs=51.5
Q ss_pred CCCCCccccccc-cccccCceec--CCCccccHHHHHHHHhcCCCCCCCCCCc-CCCCCCCccHHHHHHHHHHHH
Q 005598 95 VPIPSDFCCPLS-LELMTDPVIV--ASGQTYERAFIKKWIDLGLFVCPKTRQT-LAHTTLIPNYTVKALIANWCE 165 (689)
Q Consensus 95 ~~~p~~f~CpI~-~~lm~dPV~~--~~G~ty~r~~I~~~l~~~~~~cP~t~~~-l~~~~l~pn~~l~~~i~~~~~ 165 (689)
...|+++.||+| .+.|.|-+++ .|+.+||-.||.+.+..+ .||.|+.- .....+.|+..++..+.....
T Consensus 214 ~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~~--~~~~c~~~~~~~~~~~~p~~~r~~~n~~~a 286 (448)
T KOG0314|consen 214 GELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALISK--SMCVCGASNVLADDLLPPKTLRDTINRILA 286 (448)
T ss_pred ccCCccccCceecchhhHHHHHhhhhhcccCCccccccccccc--cCCcchhhcccccccCCchhhHHHHHHHHh
Confidence 457999999999 8999999987 689999999999998754 24555432 333466777777776665433
No 403
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=39.37 E-value=18 Score=36.11 Aligned_cols=46 Identities=20% Similarity=0.364 Sum_probs=36.8
Q ss_pred cccccccccccCcee-cCCCccccHHHHHHHHhcCCCCCCCCCCcCCC
Q 005598 101 FCCPLSLELMTDPVI-VASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 147 (689)
Q Consensus 101 f~CpI~~~lm~dPV~-~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~ 147 (689)
..|.+|..|.-.-+. -.||..|-+.||+.++++ ...||.|+.-.++
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w~h 228 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLWTH 228 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhcccCc
Confidence 579999998776554 367888999999999998 4679999865544
No 404
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=38.99 E-value=3.4e+02 Score=31.00 Aligned_cols=111 Identities=20% Similarity=0.312 Sum_probs=68.7
Q ss_pred hCcHHHHHHhcCCChHHHHHHHHHHHHHhCCchhHHHH----HhcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHhhCCH-
Q 005598 568 AGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAI----GQENGIPVLVEVVEL-GSARGKENAAAALLQLCTNSS- 641 (689)
Q Consensus 568 ~G~v~~Lv~LL~~~~~v~e~Al~~L~nLa~~~e~r~~i----~~~g~v~~Lv~lL~s-~s~~~~e~Av~aL~~L~~~~~- 641 (689)
.+.|..+++.++ ...+.+--+.++. +..++.+..+ .+.+.|+.|+.+|.. .+..++.+|+.+|..+...+.
T Consensus 20 ~~~v~~llkHI~-~~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n 96 (475)
T PF04499_consen 20 PNFVDNLLKHID-TPAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRN 96 (475)
T ss_pred ccHHHHHHHhcC-CcHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 556666666663 2333343334433 2233333333 468899999999974 578899999988877754322
Q ss_pred ------------hhHHHHHhCCChHHHHHhhhc--CCHHHHHHHHHHHHHhhcC
Q 005598 642 ------------RFCSMVLQEGAVPPLVALSQS--GTPRAKEKAQALLSYFRNQ 681 (689)
Q Consensus 642 ------------~~~~~lv~~g~i~~L~~LL~~--~~~~vr~~A~~lL~~L~~~ 681 (689)
.....++....+..|+..+-. +...+...+.-++.++++.
T Consensus 97 ~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 97 APQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKN 150 (475)
T ss_pred cccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhc
Confidence 234556667788888888773 3344444444577777665
No 405
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.62 E-value=28 Score=28.60 Aligned_cols=38 Identities=13% Similarity=0.216 Sum_probs=29.8
Q ss_pred CCCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCCccHHHH
Q 005598 117 ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVK 157 (689)
Q Consensus 117 ~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~pn~~l~ 157 (689)
.--+|||..|-+.-|. ..||.|+-.|......|--.|.
T Consensus 26 tfEcTFCadCae~~l~---g~CPnCGGelv~RP~RPaa~L~ 63 (84)
T COG3813 26 TFECTFCADCAENRLH---GLCPNCGGELVARPIRPAAKLA 63 (84)
T ss_pred EEeeehhHhHHHHhhc---CcCCCCCchhhcCcCChHHHHh
Confidence 3468999999987765 4599999999888788865554
No 406
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=38.36 E-value=1.6e+02 Score=34.79 Aligned_cols=107 Identities=14% Similarity=0.110 Sum_probs=73.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHH------cCCHHHHHHHHcCCCHHHHHHHHHHHHhccc----C
Q 005598 448 INILVDMLHSSETKIQENAVTALLNLSINDNNKSAIAN------ANAIEPLIHVLQTGSPEARENAAATLFSLSV----I 517 (689)
Q Consensus 448 I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~------~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~----~ 517 (689)
...++.+|.+..-.++...+.+++|+..+-.....+++ +..+..|++-|.+.++.+|..|+.++..+.. .
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 45677888888888888888999998754322223333 1355566666677788898888887766643 2
Q ss_pred chhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhch
Q 005598 518 EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH 559 (689)
Q Consensus 518 ~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~ 559 (689)
...|. .++...+..|++.+.-++++|...+..|...+
T Consensus 381 ~~~r~-----ev~~lv~r~lqDrss~VRrnaikl~SkLL~~H 417 (1128)
T COG5098 381 VGRRH-----EVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRH 417 (1128)
T ss_pred cchHH-----HHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcC
Confidence 22222 34566677788888888999888888776644
No 407
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=38.25 E-value=4.8e+02 Score=27.13 Aligned_cols=73 Identities=21% Similarity=0.219 Sum_probs=44.7
Q ss_pred HHhCcHHHHHHhcCCChHHH---------HHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccC--CHHHHHHHHHHHH
Q 005598 566 VQAGAVKHLVDLMDPAAGMV---------DKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG--SARGKENAAAALL 634 (689)
Q Consensus 566 v~~G~v~~Lv~LL~~~~~v~---------e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~--s~~~~e~Av~aL~ 634 (689)
.+..+.+.|+++++.+.+.. +..-.+|+.+ -.|-+..|.+++.+. ..-++..|+.+|.
T Consensus 70 re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv-----------~~G~~~~L~~li~~~~~~~yvR~aa~~aL~ 138 (249)
T PF06685_consen 70 REERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASV-----------GDGDIEPLKELIEDPDADEYVRMAAISALA 138 (249)
T ss_pred hhhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHH-----------hCCCHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 44667888888884322222 2222233332 245577777777654 4667888888888
Q ss_pred HHhhCCHhhHHHHHh
Q 005598 635 QLCTNSSRFCSMVLQ 649 (689)
Q Consensus 635 ~L~~~~~~~~~~lv~ 649 (689)
.+...++..+..+++
T Consensus 139 ~l~~~~~~~Re~vi~ 153 (249)
T PF06685_consen 139 FLVHEGPISREEVIQ 153 (249)
T ss_pred HHHHcCCCCHHHHHH
Confidence 888887766666654
No 408
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=38.11 E-value=1.5e+02 Score=26.40 Aligned_cols=70 Identities=17% Similarity=0.194 Sum_probs=50.0
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHHhhCCH-hhHHHHHhCCChHHHHHhh---hcC---CHHHHHHHHHHHHHhh
Q 005598 610 GIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVALS---QSG---TPRAKEKAQALLSYFR 679 (689)
Q Consensus 610 ~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~-~~~~~lv~~g~i~~L~~LL---~~~---~~~vr~~A~~lL~~L~ 679 (689)
++..|.+.|.+.++.++..|..+|-.|+.++. .....+.....+..++.+. ..+ ...+|+++..++....
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 56777788888899999999999999999875 4555555555544454421 112 4689999999887643
No 409
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=36.52 E-value=25 Score=24.60 Aligned_cols=10 Identities=20% Similarity=0.252 Sum_probs=7.6
Q ss_pred CCCCCCCCCc
Q 005598 135 LFVCPKTRQT 144 (689)
Q Consensus 135 ~~~cP~t~~~ 144 (689)
...||+|+.+
T Consensus 18 p~~CP~Cg~~ 27 (34)
T cd00729 18 PEKCPICGAP 27 (34)
T ss_pred CCcCcCCCCc
Confidence 3569999875
No 410
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=36.30 E-value=3.5e+02 Score=28.41 Aligned_cols=69 Identities=17% Similarity=0.134 Sum_probs=43.8
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHH--HHHHcCCHHHHHHHHc------------CCCHHHHHHHHHHH
Q 005598 446 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKS--AIANANAIEPLIHVLQ------------TGSPEARENAAATL 511 (689)
Q Consensus 446 g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~--~i~~~g~l~~Lv~lL~------------s~~~~~~~~Aa~aL 511 (689)
-++|.++.+++..++.++..++.+|..+........ .+...|..+.+-..|. ..+..+...|-.+|
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 368999999999999999999999999865432222 2444454444433332 22344555555666
Q ss_pred Hhc
Q 005598 512 FSL 514 (689)
Q Consensus 512 ~nL 514 (689)
..|
T Consensus 199 ~~L 201 (282)
T PF10521_consen 199 LSL 201 (282)
T ss_pred HHH
Confidence 655
No 411
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=36.13 E-value=17 Score=36.59 Aligned_cols=15 Identities=33% Similarity=0.860 Sum_probs=13.3
Q ss_pred ccccccccccccCce
Q 005598 100 DFCCPLSLELMTDPV 114 (689)
Q Consensus 100 ~f~CpI~~~lm~dPV 114 (689)
.|.||+|+.+|..|+
T Consensus 260 GfvCsVCLsvfc~p~ 274 (296)
T COG5242 260 GFVCSVCLSVFCRPV 274 (296)
T ss_pred eeehhhhheeecCCc
Confidence 489999999999885
No 412
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=35.66 E-value=8.7e+02 Score=29.38 Aligned_cols=118 Identities=14% Similarity=0.087 Sum_probs=76.5
Q ss_pred cCcHHHHHHhhcC--------CCHHHHHHHHHHHHHhhc--CC-ccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005598 445 CGAINILVDMLHS--------SETKIQENAVTALLNLSI--ND-NNKSAIANANAIEPLIHVLQTGSPEARENAAATLFS 513 (689)
Q Consensus 445 ~g~I~~Lv~lL~s--------~~~~v~~~Al~aL~nLs~--~~-~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~n 513 (689)
.|.++.+...|.. +++.-.+.|+..+.++.. .. ..-.-+++.=.++.++-.++++..-++..|+..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 4889999998832 234455777777777743 22 222334444456666677788878888899998888
Q ss_pred cccCchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHH
Q 005598 514 LSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKAR 564 (689)
Q Consensus 514 Ls~~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~ 564 (689)
++.+ .+..-.-..+.+....+|++.+-.+...|+.||..+-.+.....+
T Consensus 487 ~eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k 535 (970)
T COG5656 487 IEED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEK 535 (970)
T ss_pred HHHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHH
Confidence 8432 222222234566677778888888888898898888776543333
No 413
>PLN03086 PRLI-interacting factor K; Provisional
Probab=35.65 E-value=36 Score=39.41 Aligned_cols=52 Identities=12% Similarity=0.203 Sum_probs=33.5
Q ss_pred CCCCCcccccccccccc------------CceecCCCccccHHHHHHHHhc----CCCCCCCCCCcCC
Q 005598 95 VPIPSDFCCPLSLELMT------------DPVIVASGQTYERAFIKKWIDL----GLFVCPKTRQTLA 146 (689)
Q Consensus 95 ~~~p~~f~CpI~~~lm~------------dPV~~~~G~ty~r~~I~~~l~~----~~~~cP~t~~~l~ 146 (689)
..++..+.||.|..-|. -|+.-+||..+.|..+.+|... ....||+|+..+.
T Consensus 448 ~el~~H~~C~~Cgk~f~~s~LekH~~~~Hkpv~CpCg~~~~R~~L~~H~~thCp~Kpi~C~fC~~~v~ 515 (567)
T PLN03086 448 EEAKNHVHCEKCGQAFQQGEMEKHMKVFHEPLQCPCGVVLEKEQMVQHQASTCPLRLITCRFCGDMVQ 515 (567)
T ss_pred cccccCccCCCCCCccchHHHHHHHHhcCCCccCCCCCCcchhHHHhhhhccCCCCceeCCCCCCccc
Confidence 34667788888876552 3444447777777777777653 2234788877664
No 414
>PRK00420 hypothetical protein; Validated
Probab=35.51 E-value=24 Score=31.87 Aligned_cols=30 Identities=17% Similarity=0.381 Sum_probs=20.1
Q ss_pred cccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCC
Q 005598 101 FCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT 148 (689)
Q Consensus 101 f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~ 148 (689)
-.||.|+..|.. +..|++| ||.|+..+.-.
T Consensus 24 ~~CP~Cg~pLf~---lk~g~~~---------------Cp~Cg~~~~v~ 53 (112)
T PRK00420 24 KHCPVCGLPLFE---LKDGEVV---------------CPVHGKVYIVK 53 (112)
T ss_pred CCCCCCCCccee---cCCCceE---------------CCCCCCeeeec
Confidence 579999963322 2555555 99999876543
No 415
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=34.90 E-value=1.9e+02 Score=31.23 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHhC--cHHHHHHhcCC----ChHHHHHHHHHHHHHhCCchhHHHHH-------hcCc
Q 005598 544 GKKDAATALFNLSIYHENKARIVQAG--AVKHLVDLMDP----AAGMVDKAVAVLANLATIPDGRVAIG-------QENG 610 (689)
Q Consensus 544 v~~~Al~aL~nLs~~~~n~~~lv~~G--~v~~Lv~LL~~----~~~v~e~Al~~L~nLa~~~e~r~~i~-------~~g~ 610 (689)
++..|+.+|..+.........++..+ .+..|+++++. ...+...|+.+|..|+........|+ ..|+
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGi 317 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGI 317 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCccc
Confidence 45556666666666777778888766 99999999943 34677889999999998655444443 3566
Q ss_pred HHHHHHH
Q 005598 611 IPVLVEV 617 (689)
Q Consensus 611 v~~Lv~l 617 (689)
+..+++.
T Consensus 318 L~~llR~ 324 (329)
T PF06012_consen 318 LPQLLRK 324 (329)
T ss_pred HHHHHHH
Confidence 6666554
No 416
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.31 E-value=44 Score=36.99 Aligned_cols=66 Identities=14% Similarity=0.319 Sum_probs=39.3
Q ss_pred cccccccc-ccccCce---ecCCCccccHHHHHHHHhcC-----CCCCCC--CCCcCCCC---CCCccHHHHHHHHHHHH
Q 005598 100 DFCCPLSL-ELMTDPV---IVASGQTYERAFIKKWIDLG-----LFVCPK--TRQTLAHT---TLIPNYTVKALIANWCE 165 (689)
Q Consensus 100 ~f~CpI~~-~lm~dPV---~~~~G~ty~r~~I~~~l~~~-----~~~cP~--t~~~l~~~---~l~pn~~l~~~i~~~~~ 165 (689)
...|+||. +.+...- +..|||-||..|..+|+... ...||. |...++.. .+.|+ .++.+.++...
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c~~llt~-kl~e~~e~~~~ 224 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESCRKLLTP-KLREMWEQRLK 224 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHHhhhcCH-HHHHHHHHHHH
Confidence 46899999 3332211 46799999999999998732 223654 33444443 34443 45555544444
Q ss_pred H
Q 005598 166 L 166 (689)
Q Consensus 166 ~ 166 (689)
+
T Consensus 225 e 225 (384)
T KOG1812|consen 225 E 225 (384)
T ss_pred H
Confidence 3
No 417
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.90 E-value=28 Score=31.05 Aligned_cols=30 Identities=20% Similarity=0.514 Sum_probs=19.0
Q ss_pred Cccccccccccc----cCceecC-CCccccHHHHH
Q 005598 99 SDFCCPLSLELM----TDPVIVA-SGQTYERAFIK 128 (689)
Q Consensus 99 ~~f~CpI~~~lm----~dPV~~~-~G~ty~r~~I~ 128 (689)
..-+||=|+.-| +||++.| ||.+|-|+..+
T Consensus 8 tKridPetg~KFYDLNrdPiVsPytG~s~P~s~fe 42 (129)
T COG4530 8 TKRIDPETGKKFYDLNRDPIVSPYTGKSYPRSYFE 42 (129)
T ss_pred ccccCccccchhhccCCCccccCcccccchHHHHH
Confidence 345688887544 6677765 67777665544
No 418
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=33.37 E-value=2.2e+02 Score=26.75 Aligned_cols=73 Identities=18% Similarity=0.187 Sum_probs=55.9
Q ss_pred cHHHHHHHhcc-CCHHHHHHHHHHHHHHhhCCH-hhHHHHHhCCChHH-HHHhhhcC---CHHHHHHHHHHHHHhhcCc
Q 005598 610 GIPVLVEVVEL-GSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPP-LVALSQSG---TPRAKEKAQALLSYFRNQR 682 (689)
Q Consensus 610 ~v~~Lv~lL~s-~s~~~~e~Av~aL~~L~~~~~-~~~~~lv~~g~i~~-L~~LL~~~---~~~vr~~A~~lL~~L~~~~ 682 (689)
++..|.+.|.. .++.++..|..+|-.|..+++ ....++.....+.- |+.++... ...++.++..++......-
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 45677777764 589999999999999999875 56677777788886 88888632 3589999999888776543
No 419
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=33.11 E-value=1.4e+03 Score=30.92 Aligned_cols=103 Identities=12% Similarity=0.065 Sum_probs=60.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccCcccHH---HHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCccHHHHH
Q 005598 409 LVEDLKSTSLDTQREATAELRLLAKHNMDNRM---VIANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNNKSAIA 484 (689)
Q Consensus 409 Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~---~i~~~g~I~~Lv~lL~s-~~~~v~~~Al~aL~nLs~~~~~k~~i~ 484 (689)
+++.--+.+.++...|+..|+.++..-.+... .-.+..++.+|..++.+ .+.++++..+.++.++.... ..-+
T Consensus 1142 f~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~---~~nI 1218 (1780)
T PLN03076 1142 FVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSR---VNNV 1218 (1780)
T ss_pred HHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH---Hhhh
Confidence 33333345667777788888887763321111 11233567777776654 56789999999998875321 1111
Q ss_pred HcCCHHHHHHHHc----CCCHHHHHHHHHHHHhcc
Q 005598 485 NANAIEPLIHVLQ----TGSPEARENAAATLFSLS 515 (689)
Q Consensus 485 ~~g~l~~Lv~lL~----s~~~~~~~~Aa~aL~nLs 515 (689)
. .+.+.++.+|. .....+...|-.++..+.
T Consensus 1219 k-SGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~ 1252 (1780)
T PLN03076 1219 K-SGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKII 1252 (1780)
T ss_pred h-cCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 2 26677777665 334666666666665443
No 420
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=32.98 E-value=21 Score=38.68 Aligned_cols=33 Identities=18% Similarity=0.501 Sum_probs=27.6
Q ss_pred CCccccccccccccCce----ecCCCccccHHHHHHH
Q 005598 98 PSDFCCPLSLELMTDPV----IVASGQTYERAFIKKW 130 (689)
Q Consensus 98 p~~f~CpI~~~lm~dPV----~~~~G~ty~r~~I~~~ 130 (689)
-.+|.||+...+|.+=- +..+|..||-.+|++-
T Consensus 99 ~geyhcPvlfk~FT~~sHIvAv~TTGNvy~~eai~~L 135 (518)
T KOG0883|consen 99 EGEYHCPVLFKVFTRFSHIVAVRTTGNVYSWEAIEEL 135 (518)
T ss_pred CCcccCceeeeeecccceEEEEEecCceeeHHHHHHh
Confidence 56899999999998753 2468999999999984
No 421
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=32.49 E-value=4.9e+02 Score=31.16 Aligned_cols=133 Identities=23% Similarity=0.236 Sum_probs=82.6
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHH-HHcCCCHHHHHHHHHHHHhcccCchhHHHH
Q 005598 446 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIH-VLQTGSPEARENAAATLFSLSVIEDNKIKI 524 (689)
Q Consensus 446 g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~-lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I 524 (689)
.-|.-|+.+|.+.+..+.+.+-..+..+...... . -.+..||. .+++++.. |+.+|..+ ..+..+
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~--~----~l~~~l~~y~~~t~s~~----~~~il~~~-~~P~~K--- 69 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSDRE--P----WLVNGLVDYYLSTNSQR----ALEILVGV-QEPHDK--- 69 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccch--H----HHHHHHHHHHhhcCcHH----HHHHHHhc-CCccHH---
Confidence 3467788999999988888877777554322111 1 12444443 34444443 23333333 111111
Q ss_pred HhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhc-hHHHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhC
Q 005598 525 GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLAT 597 (689)
Q Consensus 525 ~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~-~~n~~~lv~~G~v~~Lv~LL--~~~~~v~e~Al~~L~nLa~ 597 (689)
.++..|-+.+.. +..+..++.+|..+... +.-...+++..++..|++.| +.+..++..|+.+|..|.-
T Consensus 70 ---~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP 140 (668)
T PF04388_consen 70 ---HLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLP 140 (668)
T ss_pred ---HHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhc
Confidence 234444444543 56778888888888774 55667788899999999988 5666777788888877654
No 422
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=32.47 E-value=3e+02 Score=33.20 Aligned_cols=156 Identities=13% Similarity=0.077 Sum_probs=95.9
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhCC-chhHHHH
Q 005598 528 GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI-PDGRVAI 605 (689)
Q Consensus 528 g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~~-~e~r~~i 605 (689)
..+..+...+..++....+..+.++.+++.-..-..+-.... +..-..-. ..-..+.+....+|..++.. ++....+
T Consensus 441 ~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~~~~~-~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l 519 (727)
T PF12726_consen 441 NLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKKEKDE-LDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKEL 519 (727)
T ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcccccC-cchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 456677777777788888888888888765221100000000 00111101 11123455677788888874 4444454
Q ss_pred H-hcCcHHHHHHHhccCCHHHHHHHHHHHHHHhhCCH--hhHHHHHhCC-------ChHHHHHhhhc----CCHHHHHHH
Q 005598 606 G-QENGIPVLVEVVELGSARGKENAAAALLQLCTNSS--RFCSMVLQEG-------AVPPLVALSQS----GTPRAKEKA 671 (689)
Q Consensus 606 ~-~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~--~~~~~lv~~g-------~i~~L~~LL~~----~~~~vr~~A 671 (689)
. +.++...++.++.++++...+.|..+|........ +..+.+++.+ +...|..+... ..+++.+..
T Consensus 520 ~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e~i~~ll~~~~~~tL~ai~~~l~~~~~~~~~~p~pr~vr~~ 599 (727)
T PF12726_consen 520 LSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLEAIQALLQSNFSPTLSAINWSLRQLTKLKFFEPCPRMVRCL 599 (727)
T ss_pred HcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhcchHHHHHHH
Confidence 4 56788999999999999999999999999876432 3445555542 23333333333 247888888
Q ss_pred HHHHHHhhcCcCC
Q 005598 672 QALLSYFRNQRHG 684 (689)
Q Consensus 672 ~~lL~~L~~~~~~ 684 (689)
..+|+.|++-..|
T Consensus 600 ~DIi~~Lcdp~~G 612 (727)
T PF12726_consen 600 MDIIEVLCDPVSG 612 (727)
T ss_pred HHHHHHHcCCCCC
Confidence 8899998876554
No 423
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=32.37 E-value=21 Score=27.49 Aligned_cols=13 Identities=31% Similarity=0.899 Sum_probs=11.3
Q ss_pred CCCCccccccccc
Q 005598 96 PIPSDFCCPLSLE 108 (689)
Q Consensus 96 ~~p~~f~CpI~~~ 108 (689)
++|+++.||+|..
T Consensus 30 ~Lp~~w~CP~C~a 42 (50)
T cd00730 30 DLPDDWVCPVCGA 42 (50)
T ss_pred HCCCCCCCCCCCC
Confidence 4899999999974
No 424
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=32.06 E-value=33 Score=36.62 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=36.0
Q ss_pred CCccccccccccccCceecCCCccccHHHHHHH--HhcCCCCCCCCCCc
Q 005598 98 PSDFCCPLSLELMTDPVIVASGQTYERAFIKKW--IDLGLFVCPKTRQT 144 (689)
Q Consensus 98 p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~--l~~~~~~cP~t~~~ 144 (689)
.++..|-||-+-..--.++||||..|..|--+- |-. ...||+|+..
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~-~K~C~~CrTE 106 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYM-QKGCPLCRTE 106 (493)
T ss_pred cccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHh-ccCCCccccc
Confidence 356889999998888788999999999997553 322 2459999965
No 425
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.00 E-value=1.1e+02 Score=34.80 Aligned_cols=71 Identities=13% Similarity=0.106 Sum_probs=56.9
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHHhhCCHhhH-HHHHhCCChHHHHHhhhcC--CHHHHHHHHHHHHHhhc
Q 005598 610 GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFC-SMVLQEGAVPPLVALSQSG--TPRAKEKAQALLSYFRN 680 (689)
Q Consensus 610 ~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~-~~lv~~g~i~~L~~LL~~~--~~~vr~~A~~lL~~L~~ 680 (689)
++..|.+.|.+.++.++..|+.+|-.|..++.... ..|.+.+++.-++.+.... ...+|+++..+|.-=..
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~ 112 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQ 112 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHH
Confidence 56778888888888999999998888888887544 4777889999999988877 35899998888765443
No 426
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=31.67 E-value=4.9e+02 Score=27.14 Aligned_cols=143 Identities=14% Similarity=0.167 Sum_probs=77.2
Q ss_pred HHHHHHcCCHH-HHHHHHcCC--CHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcC--CCHHHHHHHHHHHHh
Q 005598 480 KSAIANANAIE-PLIHVLQTG--SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGN--GTPRGKKDAATALFN 554 (689)
Q Consensus 480 k~~i~~~g~l~-~Lv~lL~s~--~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~--~~~~v~~~Al~aL~n 554 (689)
+..+++.+.++ -|+-+|.+. +..+...++.+|.+|+.--+ +- ... .+...+.........
T Consensus 33 ~r~lg~~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~P~~--------------~~-~~~~~~~~~~~~~~~~l~~~ 97 (266)
T PF04821_consen 33 RRQLGEWNIVQKDLIPILISYKDDDKLFLACLRLLVNLTWPIE--------------LL-VESQPKDKNQRRNIPELLKY 97 (266)
T ss_pred HHHHHHhchhhhhHHHHHHhccCchHHHHHHHHHHHHhCCCHH--------------Hh-ccCCCCChHHHHHHHHHHHH
Confidence 45566667776 477777643 46777777777777763211 10 100 011222222222222
Q ss_pred hhhchHHHHHHHHhCcHHHHHHhc----C--------CChHHHHHHHHHHHHHhCCch-------------hHH----HH
Q 005598 555 LSIYHENKARIVQAGAVKHLVDLM----D--------PAAGMVDKAVAVLANLATIPD-------------GRV----AI 605 (689)
Q Consensus 555 Ls~~~~n~~~lv~~G~v~~Lv~LL----~--------~~~~v~e~Al~~L~nLa~~~e-------------~r~----~i 605 (689)
+. .-|..+.+.+++.+++.++ . .+..+.+.++..+.|+...++ .+. .+
T Consensus 98 l~---~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l 174 (266)
T PF04821_consen 98 LQ---SYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWAL 174 (266)
T ss_pred HH---HHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHH
Confidence 22 2344556666666666654 1 123567889999999876432 122 23
Q ss_pred HhcCcHHHHHHHhccC-CHHHHHHHHHHHHHHhhCC
Q 005598 606 GQENGIPVLVEVVELG-SARGKENAAAALLQLCTNS 640 (689)
Q Consensus 606 ~~~g~v~~Lv~lL~s~-s~~~~e~Av~aL~~L~~~~ 640 (689)
.+.|+...|+.+..+. ...-....+.+++.+.++-
T Consensus 175 ~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~ 210 (266)
T PF04821_consen 175 FESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQ 210 (266)
T ss_pred HHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcCC
Confidence 3577788888887664 2222235566666666553
No 427
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=31.56 E-value=38 Score=26.46 Aligned_cols=27 Identities=26% Similarity=0.552 Sum_probs=22.9
Q ss_pred ccccccccccc--cCceec--CCCccccHHH
Q 005598 100 DFCCPLSLELM--TDPVIV--ASGQTYERAF 126 (689)
Q Consensus 100 ~f~CpI~~~lm--~dPV~~--~~G~ty~r~~ 126 (689)
.-.|++|++.| .|.+++ .||-.|=|.|
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C 35 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDC 35 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHH
Confidence 35799999999 788875 5999999988
No 428
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=31.51 E-value=1.1e+03 Score=30.97 Aligned_cols=136 Identities=18% Similarity=0.228 Sum_probs=73.0
Q ss_pred CCHHHHHH----HHcCCCHHHHHHHHHHHHhccc-CchhHHHHHhhCChHHHHHhhcCCCHHHHHHHHHHHHhhhhchHH
Q 005598 487 NAIEPLIH----VLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN 561 (689)
Q Consensus 487 g~l~~Lv~----lL~s~~~~~~~~Aa~aL~nLs~-~~~~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~~n 561 (689)
+.++.++. +|.+.++.++.-+......+-. .+. .....++..|+..+-+++..-...|+.+|..|+....
T Consensus 431 ~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds----~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~- 505 (1426)
T PF14631_consen 431 DYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDS----YCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNP- 505 (1426)
T ss_dssp TSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-H----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-H-
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccH-
Confidence 56666664 4567777777776665555432 222 2233468889999888877777899999999987432
Q ss_pred HHHHHH-hCcHHHHHHhcCC-ChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccCCHHHHHH
Q 005598 562 KARIVQ-AGAVKHLVDLMDP-AAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKEN 628 (689)
Q Consensus 562 ~~~lv~-~G~v~~Lv~LL~~-~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~s~~~~e~ 628 (689)
..+.. +..+..+++.++. ...-+.....+|..|+........-++...--.+-+.|.+.++..+..
T Consensus 506 -~~l~~fa~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~ 573 (1426)
T PF14631_consen 506 -SELQPFATFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRI 573 (1426)
T ss_dssp -HHHHHTHHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHH
Confidence 22222 3334444444432 233356778888888763321111122222223334455666666554
No 429
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=31.48 E-value=21 Score=27.05 Aligned_cols=33 Identities=15% Similarity=0.144 Sum_probs=21.6
Q ss_pred ecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCC
Q 005598 115 IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT 148 (689)
Q Consensus 115 ~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~ 148 (689)
+..+.|-.|..|+..-+..+ ..||+|+.+|+.+
T Consensus 16 i~C~dHYLCl~CLt~ml~~s-~~C~iC~~~LPtk 48 (50)
T PF03854_consen 16 IKCSDHYLCLNCLTLMLSRS-DRCPICGKPLPTK 48 (50)
T ss_dssp EE-SS-EEEHHHHHHT-SSS-SEETTTTEE----
T ss_pred eeecchhHHHHHHHHHhccc-cCCCcccCcCccc
Confidence 44567999999999888765 5599999998653
No 430
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.07 E-value=24 Score=36.79 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=21.9
Q ss_pred cccHHHHHHHHhc------------CCCCCCCCCCcCCCCC
Q 005598 121 TYERAFIKKWIDL------------GLFVCPKTRQTLAHTT 149 (689)
Q Consensus 121 ty~r~~I~~~l~~------------~~~~cP~t~~~l~~~~ 149 (689)
-.||+|+-+|+.. |..+||.||+.+...+
T Consensus 328 ~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 328 LWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred HHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 4678999999853 3457999999876543
No 431
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=30.35 E-value=2.7e+02 Score=24.66 Aligned_cols=71 Identities=13% Similarity=0.084 Sum_probs=50.5
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-cccHHHHHhcCcHHHHHHhhc------CCCHHHHHHHHHHHHHh
Q 005598 403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHN-MDNRMVIANCGAINILVDMLH------SSETKIQENAVTALLNL 473 (689)
Q Consensus 403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s-~~nr~~i~~~g~I~~Lv~lL~------s~~~~v~~~Al~aL~nL 473 (689)
...+..|.+.|.+.++.++..|+..|-.+.+.. +.....+....++..++.+.. ..+..|++.+..++..+
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 467888999999999999999999999998754 344455655566655555311 12567888877777554
No 432
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=30.32 E-value=22 Score=33.87 Aligned_cols=23 Identities=30% Similarity=0.796 Sum_probs=16.6
Q ss_pred CCCccccHHHHHHHHhc----------CCCCCCCCCCc
Q 005598 117 ASGQTYERAFIKKWIDL----------GLFVCPKTRQT 144 (689)
Q Consensus 117 ~~G~ty~r~~I~~~l~~----------~~~~cP~t~~~ 144 (689)
.+||.| +.||.+ |.-+||+|+..
T Consensus 9 ~~gH~F-----EgWF~ss~~fd~Q~~~glv~CP~Cgs~ 41 (148)
T PF06676_consen 9 ENGHEF-----EGWFRSSAAFDRQQARGLVSCPVCGST 41 (148)
T ss_pred CCCCcc-----ceecCCHHHHHHHHHcCCccCCCCCCC
Confidence 469999 457654 44579999965
No 433
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=30.25 E-value=1.6e+02 Score=26.68 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=31.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHH
Q 005598 447 AINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIAN 485 (689)
Q Consensus 447 ~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~ 485 (689)
+|+.|+.-|...+.+|...|+.+|...+.++.....++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 588899999999999999999999999877655444443
No 434
>PHA00733 hypothetical protein
Probab=30.15 E-value=95 Score=28.73 Aligned_cols=53 Identities=26% Similarity=0.488 Sum_probs=33.0
Q ss_pred CccccccccccccCceecCCCccccHHHHHHHHh--cCCCCCCCCCCcCCCCCCCccHHHHHHHHHHHHHcCCC
Q 005598 99 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWID--LGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVK 170 (689)
Q Consensus 99 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~--~~~~~cP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~~~ 170 (689)
..|.|+.|+..|..+.. +..|.. .....|+.|+..+... ..| ....++.|++-
T Consensus 72 kPy~C~~Cgk~Fss~s~-----------L~~H~r~h~~~~~C~~CgK~F~~~-----~sL---~~H~~~~h~~~ 126 (128)
T PHA00733 72 SPYVCPLCLMPFSSSVS-----------LKQHIRYTEHSKVCPVCGKEFRNT-----DST---LDHVCKKHNIC 126 (128)
T ss_pred CCccCCCCCCcCCCHHH-----------HHHHHhcCCcCccCCCCCCccCCH-----HHH---HHHHHHhcCcc
Confidence 34889998777666543 344443 2346799998876553 223 34677777764
No 435
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=29.96 E-value=46 Score=27.96 Aligned_cols=47 Identities=13% Similarity=0.174 Sum_probs=22.3
Q ss_pred cccccccccc-----cCceec--CCCccccHHHHHHHHhcCCCCCCCCCCcCCC
Q 005598 101 FCCPLSLELM-----TDPVIV--ASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 147 (689)
Q Consensus 101 f~CpI~~~lm-----~dPV~~--~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~ 147 (689)
-+|.||++=. -+|.++ .||.-.||.|.+=-.++|...||.|+.++..
T Consensus 10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 10 QICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp -B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred cccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 4688887522 345554 5888899999998888898889999987654
No 436
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=29.67 E-value=22 Score=26.94 Aligned_cols=13 Identities=31% Similarity=0.899 Sum_probs=8.4
Q ss_pred CCCCccccccccc
Q 005598 96 PIPSDFCCPLSLE 108 (689)
Q Consensus 96 ~~p~~f~CpI~~~ 108 (689)
++|+++.||+|..
T Consensus 30 ~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 30 DLPDDWVCPVCGA 42 (47)
T ss_dssp GS-TT-B-TTTSS
T ss_pred HCCCCCcCcCCCC
Confidence 4899999999974
No 437
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=29.63 E-value=32 Score=25.91 Aligned_cols=29 Identities=24% Similarity=0.492 Sum_probs=17.7
Q ss_pred ceecCCCcc-----ccHHHHHHHHhc-CCCCCCCC
Q 005598 113 PVIVASGQT-----YERAFIKKWIDL-GLFVCPKT 141 (689)
Q Consensus 113 PV~~~~G~t-----y~r~~I~~~l~~-~~~~cP~t 141 (689)
|++.||+-+ .=+.|+++|+.. +..+|++|
T Consensus 13 ~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 13 PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp -EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 678776432 458899999975 44568876
No 438
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=29.52 E-value=3.1e+02 Score=25.69 Aligned_cols=72 Identities=18% Similarity=0.200 Sum_probs=56.0
Q ss_pred hhHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccC-cccHHHHHhcCcHHH-HHHhhcC---CCHHHHHHHHHHHHHhh
Q 005598 403 ETQVRKLVEDLKS-TSLDTQREATAELRLLAKHN-MDNRMVIANCGAINI-LVDMLHS---SETKIQENAVTALLNLS 474 (689)
Q Consensus 403 ~~~V~~Lv~~L~s-~~~~~q~~Al~~L~~La~~s-~~nr~~i~~~g~I~~-Lv~lL~s---~~~~v~~~Al~aL~nLs 474 (689)
+..+..|-+.|.+ .++.++..|+..|-.+.+.. ......++..+++.- |+.++.. .+..|+...+.++..++
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHH
Confidence 5788889999984 58889999999998888754 344566777789986 8999863 24578888888888876
No 439
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=28.97 E-value=7.6e+02 Score=26.65 Aligned_cols=200 Identities=14% Similarity=0.079 Sum_probs=116.8
Q ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCc-hh----HHHHHhh-CChHHHHHhhcCCCHHHHHHHHHHHHh
Q 005598 481 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE-DN----KIKIGRS-GAIGPLVDLLGNGTPRGKKDAATALFN 554 (689)
Q Consensus 481 ~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~-~~----k~~I~~~-g~I~~Lv~LL~~~~~~v~~~Al~aL~n 554 (689)
..+..+|.+..|+..|...+.+.+..++....++-..+ .. ...+... ..+..|+.--.. .+++...+-..|..
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrE 151 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRE 151 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHH
Confidence 34567899999999999888888888887777764321 11 1222221 344444433111 23333333333333
Q ss_pred hhhchHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-CchhHHHHHhcC---c-HHHHHHHhccCCHHHHHH
Q 005598 555 LSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQEN---G-IPVLVEVVELGSARGKEN 628 (689)
Q Consensus 555 Ls~~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g---~-v~~Lv~lL~s~s~~~~e~ 628 (689)
-..+..-...+....-+......+ .+.=++...|+.+...+.. +.....++...+ . ...--.++.+++--++..
T Consensus 152 cirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrq 231 (342)
T KOG1566|consen 152 CIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQ 231 (342)
T ss_pred HHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHH
Confidence 222333444455555555555555 3444778888888887765 444444444332 2 334666778888889999
Q ss_pred HHHHHHHHhhCCHh---hHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 005598 629 AAAALLQLCTNSSR---FCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 681 (689)
Q Consensus 629 Av~aL~~L~~~~~~---~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL~~L~~~ 681 (689)
+...|..+..+.+. ....+-+...+..++.+|+..+..++-.|=.+.+.+...
T Consensus 232 s~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAn 287 (342)
T KOG1566|consen 232 SLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVAN 287 (342)
T ss_pred HHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcC
Confidence 99999887665541 222232345567777788877766666666665555543
No 440
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=28.05 E-value=4.7e+02 Score=27.47 Aligned_cols=72 Identities=17% Similarity=0.193 Sum_probs=48.9
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccH-HHHHhcCcHHHHHHhh----c--------CCCHHHHHHHHHH
Q 005598 403 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNR-MVIANCGAINILVDML----H--------SSETKIQENAVTA 469 (689)
Q Consensus 403 ~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr-~~i~~~g~I~~Lv~lL----~--------s~~~~v~~~Al~a 469 (689)
...++.++.++.+.+++.+..++..|..+....+... ..+.+.|..+.+-..| . .....+...|..+
T Consensus 118 ~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~ 197 (282)
T PF10521_consen 118 PLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA 197 (282)
T ss_pred hHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence 4678999999999999999999999999987543222 2356667665554433 2 1234456666666
Q ss_pred HHHhh
Q 005598 470 LLNLS 474 (689)
Q Consensus 470 L~nLs 474 (689)
|..|.
T Consensus 198 L~~L~ 202 (282)
T PF10521_consen 198 LLSLL 202 (282)
T ss_pred HHHHH
Confidence 66663
No 441
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=27.05 E-value=3.6e+02 Score=24.41 Aligned_cols=106 Identities=22% Similarity=0.234 Sum_probs=62.0
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCc--------ccH-HHH----Hhc--CcHHHHHHhhcCCC----HHH
Q 005598 402 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNM--------DNR-MVI----ANC--GAINILVDMLHSSE----TKI 462 (689)
Q Consensus 402 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~--------~nr-~~i----~~~--g~I~~Lv~lL~s~~----~~v 462 (689)
+...+..++..++++ +......+..|..+..+-. ..| ..+ .+. .++..+...+.... ..+
T Consensus 24 Wp~~l~~l~~~~~~~-~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~ 102 (148)
T PF08389_consen 24 WPDFLEDLLQLLQSS-PQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQILSQSSSEANEEL 102 (148)
T ss_dssp STTHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHH
T ss_pred CchHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHH
Confidence 356888888888774 4445556666665543211 112 222 221 34444445554422 677
Q ss_pred HHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHH
Q 005598 463 QENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATL 511 (689)
Q Consensus 463 ~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL 511 (689)
...++.++..... --.-..+...+.++.++.+|..+. ++..|+.+|
T Consensus 103 ~~~~L~~l~s~i~-~~~~~~i~~~~~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 103 VKAALKCLKSWIS-WIPIELIINSNLLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHTT-TS-HHHHHSSSHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hCCHHHhccHHHHHHHHHHcCCHH--HHHHHHHhC
Confidence 8888888888754 333455666778999999995543 366666654
No 442
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=26.88 E-value=8.6e+02 Score=26.65 Aligned_cols=178 Identities=16% Similarity=0.091 Sum_probs=0.0
Q ss_pred HcCCCHHHHHHHHHHHHhcccCchhHHHHHhh-CChHHHHHhhc----C-------CCHHHHHHHHHHHHhhhhchHHHH
Q 005598 496 LQTGSPEARENAAATLFSLSVIEDNKIKIGRS-GAIGPLVDLLG----N-------GTPRGKKDAATALFNLSIYHENKA 563 (689)
Q Consensus 496 L~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~-g~I~~Lv~LL~----~-------~~~~v~~~Al~aL~nLs~~~~n~~ 563 (689)
|...+...|..|-..|.+.-...++....... .-++.+++.++ . .+.++...|+.+|..+..+++...
T Consensus 2 la~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~ 81 (372)
T PF12231_consen 2 LAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVS 81 (372)
T ss_pred CCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHh
Q ss_pred HHHH--hC-cHHHHHHhc---CCChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhcc-----CCHHHHHHHHHH
Q 005598 564 RIVQ--AG-AVKHLVDLM---DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL-----GSARGKENAAAA 632 (689)
Q Consensus 564 ~lv~--~G-~v~~Lv~LL---~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s-----~s~~~~e~Av~a 632 (689)
.+-. .. .+...+..| ..++.++..++++|+.=-..+. +.....+..++..+.. ++..+...+..+
T Consensus 82 ~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~----~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i 157 (372)
T PF12231_consen 82 TLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPK----IMTSDRVERLLAALHNIKNRFPSKSIISERLNI 157 (372)
T ss_pred hCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCc----ccchhhHHHHHHHHHHhhccCCchhHHHHHHHH
Q ss_pred HHHHhhCCHhhHHHHHhCC-ChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 005598 633 LLQLCTNSSRFCSMVLQEG-AVPPLVALSQSGTPRAKEKAQALLSYFR 679 (689)
Q Consensus 633 L~~L~~~~~~~~~~lv~~g-~i~~L~~LL~~~~~~vr~~A~~lL~~L~ 679 (689)
+.++....+. ..+...+ -++.|+..+-+....++.+|..++..+.
T Consensus 158 ~~~ll~q~p~--~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 158 YKRLLSQFPQ--QMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAK 203 (372)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
No 443
>PLN03205 ATR interacting protein; Provisional
Probab=26.83 E-value=1.2e+02 Score=33.42 Aligned_cols=109 Identities=16% Similarity=0.100 Sum_probs=63.2
Q ss_pred HHHHhc-CCChHHHHHHHHHH----HHHhCCchhHHHHHhcCcHHHHHHHh-----ccCCHHHHHHHHHHHHHHhhCCH-
Q 005598 573 HLVDLM-DPAAGMVDKAVAVL----ANLATIPDGRVAIGQENGIPVLVEVV-----ELGSARGKENAAAALLQLCTNSS- 641 (689)
Q Consensus 573 ~Lv~LL-~~~~~v~e~Al~~L----~nLa~~~e~r~~i~~~g~v~~Lv~lL-----~s~s~~~~e~Av~aL~~L~~~~~- 641 (689)
+|+.+. -.+..++..++.+| .+|+.+...-++-.+.+.+ .|.+++ .+..+.++..|+.++-.+...+.
T Consensus 327 aLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWv-sLfElm~QiAv~~TEE~VrLEAvSIMnVIlmssna 405 (652)
T PLN03205 327 PLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWH-SLFELMNQIASIRTEEDVKLEALSIMNIIVMSTDA 405 (652)
T ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHH-HHHHHHHHHHhccchhheeeehhhhhHHhhhccch
Confidence 344443 23334455555444 3444433322333444443 333333 23466777888888766554432
Q ss_pred -hhHHHHHhCCChHHHHHhhhcCC-HHHHHHHHHHHHHhhcCc
Q 005598 642 -RFCSMVLQEGAVPPLVALSQSGT-PRAKEKAQALLSYFRNQR 682 (689)
Q Consensus 642 -~~~~~lv~~g~i~~L~~LL~~~~-~~vr~~A~~lL~~L~~~~ 682 (689)
..++.+.+.-++..+.++|+... -.+++.|..+|-+|-+++
T Consensus 406 ~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCp 448 (652)
T PLN03205 406 YTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCP 448 (652)
T ss_pred hHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCc
Confidence 35566666678889999998765 689999998877766544
No 444
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=26.83 E-value=32 Score=30.31 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=17.0
Q ss_pred cCCCccccHHHHHHHHhcCCCCCCCCCCc
Q 005598 116 VASGQTYERAFIKKWIDLGLFVCPKTRQT 144 (689)
Q Consensus 116 ~~~G~ty~r~~I~~~l~~~~~~cP~t~~~ 144 (689)
+.||+.|+.. ..-+.+| ||.||-.
T Consensus 6 trCG~vf~~g--~~~il~G---Cp~CG~n 29 (112)
T COG3364 6 TRCGEVFDDG--SEEILSG---CPKCGCN 29 (112)
T ss_pred cccccccccc--cHHHHcc---Cccccch
Confidence 5799999875 3344444 9999864
No 445
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=26.62 E-value=3.4e+02 Score=33.21 Aligned_cols=117 Identities=9% Similarity=0.075 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhcCCCh--HHHHHHHHHHHHHhCCchhHHHH------HhcCcHH
Q 005598 541 TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAA--GMVDKAVAVLANLATIPDGRVAI------GQENGIP 612 (689)
Q Consensus 541 ~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL~~~~--~v~e~Al~~L~nLa~~~e~r~~i------~~~g~v~ 612 (689)
+....-.++..|+.|+.+..-...+|+.|+|..|+.+=.... --+..++..| ......-+.+ +-..+|.
T Consensus 366 d~~l~~~~~k~~~~l~~h~kfa~~fv~~~gi~kll~vpr~s~~~~g~s~cly~~---~~~q~~mervc~~p~~v~~~vv~ 442 (1516)
T KOG1832|consen 366 DSPLLPDVMKLICALAAHRKFAAMFVERRGILKLLAVPRVSETFYGLSSCLYTI---GSLQGIMERVCALPLVVIHQVVK 442 (1516)
T ss_pred cccccHHHHHHHHHHHHhhHHHHHHHHhhhhHHHhcCCCchhhhhhHHHHHHHH---hhhhhHHHHHhhccHHHHHHHHH
Confidence 455666788888888888888889999999999887642211 1122333333 3322222222 2234455
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhh
Q 005598 613 VLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQ 661 (689)
Q Consensus 613 ~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~ 661 (689)
.-+.+|.......+.+++..... |..-....+.+-...++++|+.++.
T Consensus 443 ~~~~l~~cs~~~~~~~~~~ff~~-~f~frail~~fd~~d~l~~l~~~~~ 490 (1516)
T KOG1832|consen 443 LAIELLDCSQDQARKNSALFFAA-AFVFRAILDAFDAQDSLQKLLAILK 490 (1516)
T ss_pred HHHHHHhcchhhccchHHHHHHH-HHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 55666665555555444433222 2222223333334566777777664
No 446
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=26.59 E-value=29 Score=33.21 Aligned_cols=20 Identities=25% Similarity=0.629 Sum_probs=17.7
Q ss_pred CccccccccccccCceecCC
Q 005598 99 SDFCCPLSLELMTDPVIVAS 118 (689)
Q Consensus 99 ~~f~CpI~~~lm~dPV~~~~ 118 (689)
++.+||||++...+.|+|-|
T Consensus 1 ed~~CpICme~PHNAVLLlC 20 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLC 20 (162)
T ss_pred CCccCceeccCCCceEEEEe
Confidence 46789999999999999865
No 447
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.50 E-value=1.2e+03 Score=28.11 Aligned_cols=65 Identities=18% Similarity=0.246 Sum_probs=44.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhh--cCCcc----HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 005598 449 NILVDMLHSSETKIQENAVTALLNLS--INDNN----KSAIANANAIEPLIHVLQTGSPEARENAAATLFSL 514 (689)
Q Consensus 449 ~~Lv~lL~s~~~~v~~~Al~aL~nLs--~~~~~----k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nL 514 (689)
|.|-+-|+..+..|+.+|+.++.++- .+++. +..+++ .-...|..+|+++.+.+|..|..-+..+
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~ 247 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKI 247 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 34455667788899999999998873 34433 222332 4567788999999888888776555443
No 448
>PF09162 Tap-RNA_bind: Tap, RNA-binding; InterPro: IPR015245 This domain adopts a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. It is mainly found in mRNA export factors, which mediate the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element []. ; GO: 0003723 RNA binding, 0006406 mRNA export from nucleus, 0005634 nucleus, 0005737 cytoplasm; PDB: 1FT8_A 1KOH_C 1KOO_C 3RW6_B 3RW7_C 1FO1_A.
Probab=26.29 E-value=39 Score=29.24 Aligned_cols=24 Identities=21% Similarity=0.539 Sum_probs=19.4
Q ss_pred eecCCCccccHHHHHHHHhcCCCCCCC
Q 005598 114 VIVASGQTYERAFIKKWIDLGLFVCPK 140 (689)
Q Consensus 114 V~~~~G~ty~r~~I~~~l~~~~~~cP~ 140 (689)
|++|.|+.||+..|.+-++.. ||+
T Consensus 10 VtIp~G~KYdK~wLl~~iq~~---c~v 33 (88)
T PF09162_consen 10 VTIPYGKKYDKDWLLNSIQSH---CSV 33 (88)
T ss_dssp EEETTGGGS-HHHHHHHHHHH---SSS
T ss_pred EEecCCcccCHHHHHHHHHHH---CCC
Confidence 789999999999999998752 654
No 449
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=26.25 E-value=38 Score=27.44 Aligned_cols=12 Identities=25% Similarity=0.617 Sum_probs=9.2
Q ss_pred ccHHHHHHHHhc
Q 005598 122 YERAFIKKWIDL 133 (689)
Q Consensus 122 y~r~~I~~~l~~ 133 (689)
|||.|+.+|+..
T Consensus 12 FCRNCLskWy~~ 23 (68)
T PF06844_consen 12 FCRNCLSKWYRE 23 (68)
T ss_dssp --HHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999975
No 450
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=26.07 E-value=33 Score=31.77 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=17.1
Q ss_pred cCCCccccHHHHHHHHhcCCCCCCCCCCc
Q 005598 116 VASGQTYERAFIKKWIDLGLFVCPKTRQT 144 (689)
Q Consensus 116 ~~~G~ty~r~~I~~~l~~~~~~cP~t~~~ 144 (689)
+.||++|+-...+ +..| ||.||-.
T Consensus 5 t~Cg~~f~dgs~e--il~G---CP~CGg~ 28 (131)
T PF09845_consen 5 TKCGRVFEDGSKE--ILSG---CPECGGN 28 (131)
T ss_pred CcCCCCcCCCcHH--HHcc---CcccCCc
Confidence 5799999765544 4445 9999854
No 451
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=25.94 E-value=5.3e+02 Score=28.76 Aligned_cols=231 Identities=11% Similarity=0.020 Sum_probs=0.0
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHhccc-CchhHHHH
Q 005598 447 AINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGS-PEARENAAATLFSLSV-IEDNKIKI 524 (689)
Q Consensus 447 ~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~s~~-~~~~~~Aa~aL~nLs~-~~~~k~~I 524 (689)
++..|+.++++.|++-+.....+|.++-..-.+....+.......+...+.... .......+..+.++.. ..-.-..-
T Consensus 134 fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~e 213 (409)
T PF01603_consen 134 FIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEE 213 (409)
T ss_dssp HHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHH
Q ss_pred HhhCChHHHHHhhcCC-CHHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-CCChHHHHHHHHHHHHHhC-Cchh
Q 005598 525 GRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDG 601 (689)
Q Consensus 525 ~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~ 601 (689)
-..=....|+.|.+.. .......-..++......+.. ...-++..|++.- ..+..-...-+.-+..+.. .+..
T Consensus 214 h~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~----l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~ 289 (409)
T PF01603_consen 214 HKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPS----LAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPE 289 (409)
T ss_dssp HHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GG----GHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch----hHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHH
Q ss_pred HHHHHhcCcHHHHHHHhccCCHHHHHHHHHHHHH--HhhCCHhhHHHHHhCCChHHHHHhhhcC-CHHHHHHHHHHHHHh
Q 005598 602 RVAIGQENGIPVLVEVVELGSARGKENAAAALLQ--LCTNSSRFCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLSYF 678 (689)
Q Consensus 602 r~~i~~~g~v~~Lv~lL~s~s~~~~e~Av~aL~~--L~~~~~~~~~~lv~~g~i~~L~~LL~~~-~~~vr~~A~~lL~~L 678 (689)
.-.-+.......+.+.+.+.+-.+.+.|+..+-+ +..--.++...++.. .++.|....+.. +..++..|..+|++|
T Consensus 290 ~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~i~p~-i~~~L~~~~~~HWn~~Vr~~a~~vl~~l 368 (409)
T PF01603_consen 290 EFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNSRVILPI-IFPALYRNSKNHWNQTVRNLAQNVLKIL 368 (409)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHHHHHH-HHHHHSSTTSS-SSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q ss_pred hcCc
Q 005598 679 RNQR 682 (689)
Q Consensus 679 ~~~~ 682 (689)
....
T Consensus 369 ~~~d 372 (409)
T PF01603_consen 369 MEMD 372 (409)
T ss_dssp HTTS
T ss_pred HHhC
No 452
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=25.65 E-value=65 Score=28.99 Aligned_cols=40 Identities=25% Similarity=0.324 Sum_probs=32.5
Q ss_pred HHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHH
Q 005598 423 EATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQ 463 (689)
Q Consensus 423 ~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~ 463 (689)
..+..+..|+. .|+....+++.|+++.|+.||.+.|.++.
T Consensus 65 ~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 65 EEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 46677777877 56778888899999999999999887654
No 453
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=25.64 E-value=6.6e+02 Score=24.78 Aligned_cols=137 Identities=22% Similarity=0.215 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhhccCcccHHHHH-------h-----c-CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHHc
Q 005598 420 TQREATAELRLLAKHNMDNRMVIA-------N-----C-GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANA 486 (689)
Q Consensus 420 ~q~~Al~~L~~La~~s~~nr~~i~-------~-----~-g~I~~Lv~lL~s~~~~v~~~Al~aL~nLs~~~~~k~~i~~~ 486 (689)
++..|+.+|..+++.. +.|..+. + . .-...+.-++...+++++..|+.+|..|-.+...--..++.
T Consensus 2 vR~~Al~~L~al~k~~-~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 2 VRQAALQCLQALAKST-DKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred hhHHHHHHHHHHHHhc-CCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 3556777777777752 1222211 1 1 12333444556678899999999998885432211111110
Q ss_pred --------------------CCHHHHHHHHcCC-CHHHHHHHHHHHHhcccCchh-HHHHH-hhCChHHHHHhhcCCCHH
Q 005598 487 --------------------NAIEPLIHVLQTG-SPEARENAAATLFSLSVIEDN-KIKIG-RSGAIGPLVDLLGNGTPR 543 (689)
Q Consensus 487 --------------------g~l~~Lv~lL~s~-~~~~~~~Aa~aL~nLs~~~~~-k~~I~-~~g~I~~Lv~LL~~~~~~ 543 (689)
..-..|+..|... +..+......+|..|.....+ |-..+ -..++..+..++.+.+..
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 1223455555544 455666777777777664333 22211 113445555566677888
Q ss_pred HHHHHHHHHHhhhh
Q 005598 544 GKKDAATALFNLSI 557 (689)
Q Consensus 544 v~~~Al~aL~nLs~ 557 (689)
++..++.++..|..
T Consensus 161 v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 161 VRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHHHHHHHc
Confidence 88888888777655
No 454
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=25.45 E-value=2.2e+02 Score=31.45 Aligned_cols=71 Identities=18% Similarity=0.178 Sum_probs=58.0
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHHhhCCH-hhHHHHHhCCChHHHHHhhh-cCCHHHHHHHHHHHHHhhc
Q 005598 610 GIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVALSQ-SGTPRAKEKAQALLSYFRN 680 (689)
Q Consensus 610 ~v~~Lv~lL~s~s~~~~e~Av~aL~~L~~~~~-~~~~~lv~~g~i~~L~~LL~-~~~~~vr~~A~~lL~~L~~ 680 (689)
++..|.+-|...++-+...|+..|..|..++. ..+..|-.......|..|+. ...++++++...+++....
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 57888888999999999999999999998875 45666666788888999998 5568898888877766554
No 455
>KOG2487 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription; Replication, recombination and repair]
Probab=25.44 E-value=25 Score=36.47 Aligned_cols=34 Identities=21% Similarity=0.504 Sum_probs=24.4
Q ss_pred ccccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCC--CCCCCccH
Q 005598 100 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLA--HTTLIPNY 154 (689)
Q Consensus 100 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~--~~~l~pn~ 154 (689)
.|.|+||+.+|..++ ..||.|...++ .....||.
T Consensus 273 G~VCSVCLSVfC~~~---------------------PiC~~C~s~F~~t~~Pv~p~~ 308 (314)
T KOG2487|consen 273 GFVCSVCLSVFCRFV---------------------PICKTCKSKFSFTKYPVKPNR 308 (314)
T ss_pred eeehHHHHHHhhCCC---------------------CccchhhhhcccccCccchhh
Confidence 478999999888874 35888887774 44555663
No 456
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=25.24 E-value=3.6e+02 Score=26.45 Aligned_cols=67 Identities=18% Similarity=0.229 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 005598 402 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNL 473 (689)
Q Consensus 402 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~~Lv~lL~s~~~~v~~~Al~aL~nL 473 (689)
.+..++.+++..-+.+..++..|+..|....+..--|-... +|.|+.|..++++.++..|...+..+
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~c-----vp~lIAL~ts~~~~ir~~A~~~l~~l 72 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQC-----VPTLIALETSPNPSIRSRAYQLLKEL 72 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHH-----HhHhhhhhCCCChHHHHHHHHHHHHH
No 457
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=24.66 E-value=80 Score=23.32 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=20.7
Q ss_pred cccccccccCceec---CCCccccHHHHHHHHhcCCC-CCCCC
Q 005598 103 CPLSLELMTDPVIV---ASGQTYERAFIKKWIDLGLF-VCPKT 141 (689)
Q Consensus 103 CpI~~~lm~dPV~~---~~G~ty~r~~I~~~l~~~~~-~cP~t 141 (689)
|-+|.++..-=+.= .|+-.+=..|+..||..... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 44555555555543 37778889999999987543 59986
No 458
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=24.61 E-value=4.8e+02 Score=31.51 Aligned_cols=56 Identities=16% Similarity=0.113 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhhcC-Ccc-HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 005598 461 KIQENAVTALLNLSIN-DNN-KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV 516 (689)
Q Consensus 461 ~v~~~Al~aL~nLs~~-~~~-k~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~ 516 (689)
.+......+|..++.- +.. +..+.+.++...++.+|-+++.++...|..+|.....
T Consensus 496 ~~~~~~~~il~rls~~~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d 553 (727)
T PF12726_consen 496 QITDLISQILERLSDFDPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD 553 (727)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhc
Confidence 4556677788888744 333 4445566899999999999999999999999988753
No 459
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=24.61 E-value=8.1e+02 Score=25.51 Aligned_cols=124 Identities=18% Similarity=0.126 Sum_probs=61.5
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCcccHHHHHhcCcHH-HHHHhhcC--CCHHHHHHHHHHHHHhhcCCccH
Q 005598 404 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAIN-ILVDMLHS--SETKIQENAVTALLNLSINDNNK 480 (689)
Q Consensus 404 ~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~nr~~i~~~g~I~-~Lv~lL~s--~~~~v~~~Al~aL~nLs~~~~~k 480 (689)
..++.|.+.|+..++... . .|..+++.+.++ -|+.+|.+ .+.++...++.+|.+|+.--+..
T Consensus 13 ~~LkdL~r~lr~dd~~~~-~--------------v~r~lg~~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~P~~~~ 77 (266)
T PF04821_consen 13 ECLKDLKRFLRRDDEDQR-D--------------VRRQLGEWNIVQKDLIPILISYKDDDKLFLACLRLLVNLTWPIELL 77 (266)
T ss_pred HHHHHHHHHHHHhCcchH-H--------------HHHHHHHhchhhhhHHHHHHhccCchHHHHHHHHHHHHhCCCHHHh
Confidence 456666666665443321 1 233333333333 34444433 36788899999999997421110
Q ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcC-----------CCHHHHHHHH
Q 005598 481 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGN-----------GTPRGKKDAA 549 (689)
Q Consensus 481 ~~i~~~g~l~~Lv~lL~s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~-----------~~~~v~~~Al 549 (689)
.+. . ..+...+.+.......+ ..+|..|...+++..++.++.. .+..+....+
T Consensus 78 ---~~~--~--------~~~~~~~~~~~~l~~~l---~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL 141 (266)
T PF04821_consen 78 ---VES--Q--------PKDKNQRRNIPELLKYL---QSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVL 141 (266)
T ss_pred ---ccC--C--------CCChHHHHHHHHHHHHH---HHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHH
Confidence 000 0 00111111111111211 2345566566666666665521 1346777888
Q ss_pred HHHHhhhhc
Q 005598 550 TALFNLSIY 558 (689)
Q Consensus 550 ~aL~nLs~~ 558 (689)
..+.|+..-
T Consensus 142 ~LiRNlL~I 150 (266)
T PF04821_consen 142 TLIRNLLAI 150 (266)
T ss_pred HHHHHHhcC
Confidence 888888764
No 460
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.55 E-value=1.7e+02 Score=37.32 Aligned_cols=174 Identities=14% Similarity=0.138 Sum_probs=89.5
Q ss_pred CCHHHHHHHHc--CCCHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhc----CC---CHHHHHHHHHHHHhhhh
Q 005598 487 NAIEPLIHVLQ--TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG----NG---TPRGKKDAATALFNLSI 557 (689)
Q Consensus 487 g~l~~Lv~lL~--s~~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~----~~---~~~v~~~Al~aL~nLs~ 557 (689)
+.+.+...+.. .+..+++.....+|.++-....-.. -.| ++...++|+ .+ ...+.+.+-..|.-++.
T Consensus 840 ~~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ge~l---l~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIss 915 (1610)
T KOG1848|consen 840 GMLLPSLEVSDNSSRGVEVRISSLEALVSILETVGEHL---LHG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISS 915 (1610)
T ss_pred HHHHHHHHHHHhcCccceeeHHHHHHHHHHHhccchhh---ccc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhh
Confidence 44444444433 3446777788888887754322111 112 455555544 12 23444455555554444
Q ss_pred chH-HHHHHHHhCcHHHHHHhc--CCChHHHHHHHHHHHHHhCCchh-HHHHHhcCcHHHHHHHhc--cCCHHHHHHHHH
Q 005598 558 YHE-NKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDG-RVAIGQENGIPVLVEVVE--LGSARGKENAAA 631 (689)
Q Consensus 558 ~~~-n~~~lv~~G~v~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~-r~~i~~~g~v~~Lv~lL~--s~s~~~~e~Av~ 631 (689)
+-= .-..=+-.+++..++.+. ..+..+.-.|++.++++...-.. +....+.+.-...++.+. ..+..+-.++++
T Consensus 916 DfLqSLp~sci~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lw 995 (1610)
T KOG1848|consen 916 DFLQSLPTSCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLW 995 (1610)
T ss_pred cchhcCChHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHH
Confidence 210 000112245566666655 34556677899999998764333 222333333333333333 345555666666
Q ss_pred HHH-----HHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHH
Q 005598 632 ALL-----QLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAK 668 (689)
Q Consensus 632 aL~-----~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr 668 (689)
++. ++|.++ ..-++.|+++.|.+++.+......
T Consensus 996 i~ll~~L~~~~~ds----r~eVRngAvqtlfri~~Shg~~l~ 1033 (1610)
T KOG1848|consen 996 IMLLVHLADLCEDS----RAEVRNGAVQTLFRIFNSHGSKLG 1033 (1610)
T ss_pred HHHHHHHHHHhccc----hHHHhhhHHHHHHHHHhhhcccCC
Confidence 543 334333 233467889999998887765443
No 461
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=24.51 E-value=40 Score=26.11 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=13.4
Q ss_pred CCCccccHHHHHHHHhcCCCCCCCC
Q 005598 117 ASGQTYERAFIKKWIDLGLFVCPKT 141 (689)
Q Consensus 117 ~~G~ty~r~~I~~~l~~~~~~cP~t 141 (689)
.|||.| +..|..-. .++..||.|
T Consensus 33 ~Cgh~w-~~~v~~R~-~~~~~CP~C 55 (55)
T PF14311_consen 33 KCGHEW-KASVNDRT-RRGKGCPYC 55 (55)
T ss_pred CCCCee-EccHhhhc-cCCCCCCCC
Confidence 567777 44444433 334569987
No 462
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=24.40 E-value=3e+02 Score=27.30 Aligned_cols=97 Identities=11% Similarity=0.192 Sum_probs=41.4
Q ss_pred HHHHHhCcHHHHHHhc----CCC---------------hHHHHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHhccCC
Q 005598 563 ARIVQAGAVKHLVDLM----DPA---------------AGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGS 622 (689)
Q Consensus 563 ~~lv~~G~v~~Lv~LL----~~~---------------~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~v~~Lv~lL~s~s 622 (689)
..+...|+...++++| +.. ..+...+..+|..+|. +.+++..+.+. ++.++..+....
T Consensus 37 ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~ 114 (207)
T PF01365_consen 37 KLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQ 114 (207)
T ss_dssp HHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCC
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhh
Confidence 3455688888888887 222 2466788899999998 44556655543 222233332211
Q ss_pred HHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhc
Q 005598 623 ARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQS 662 (689)
Q Consensus 623 ~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~ 662 (689)
-..--.+..+|..+..++...+..+.+.. +..++.++..
T Consensus 115 ~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll~~ 153 (207)
T PF01365_consen 115 IGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELLRK 153 (207)
T ss_dssp H-TTHHHHHHHHHHHTT-----------------------
T ss_pred ccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHHHH
Confidence 11123456677777777776666665443 6666666655
No 463
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=24.10 E-value=43 Score=34.96 Aligned_cols=55 Identities=18% Similarity=0.430 Sum_probs=35.4
Q ss_pred CCCCCCccccccccccccC-------------cee-cCCCccccHHHHHH-HHhc----CCCCCCCCCCcCCCC
Q 005598 94 PVPIPSDFCCPLSLELMTD-------------PVI-VASGQTYERAFIKK-WIDL----GLFVCPKTRQTLAHT 148 (689)
Q Consensus 94 ~~~~p~~f~CpI~~~lm~d-------------PV~-~~~G~ty~r~~I~~-~l~~----~~~~cP~t~~~l~~~ 148 (689)
+.+-+..|.|++|...+.- |-. .-||.-|.|-++.+ +++. .+..||.|++.+..+
T Consensus 155 ~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADR 228 (279)
T KOG2462|consen 155 SLDSKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADR 228 (279)
T ss_pred cccccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcch
Confidence 3344777899999876532 322 24777888876544 4443 245699999888763
No 464
>PRK13908 putative recombination protein RecO; Provisional
Probab=24.08 E-value=1.3e+02 Score=29.99 Aligned_cols=38 Identities=24% Similarity=0.433 Sum_probs=31.1
Q ss_pred CCCccccccccccccCceecC---------C--CccccHHHHHHHHhcC
Q 005598 97 IPSDFCCPLSLELMTDPVIVA---------S--GQTYERAFIKKWIDLG 134 (689)
Q Consensus 97 ~p~~f~CpI~~~lm~dPV~~~---------~--G~ty~r~~I~~~l~~~ 134 (689)
+..++.|-+|.+...+.+.+. | |.+|++.-|+.|++..
T Consensus 135 Lh~~~~Cf~Ce~~i~~~iaL~RaflpaH~~C~~~~~f~~~ki~~~f~~k 183 (204)
T PRK13908 135 LHKDFICFLCDEKIENEIALARAFLPAHPSCIKSKSFELEKIKEFFRTK 183 (204)
T ss_pred cCCCCeEEecCCccccchHHHHhhcccChhhhcccccCHHHHHHHHHhC
Confidence 688999999999988888641 3 6679999999998865
No 465
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=23.50 E-value=1.3e+03 Score=27.57 Aligned_cols=73 Identities=15% Similarity=0.266 Sum_probs=47.5
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCccc-------HHHHHh-cCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 005598 402 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDN-------RMVIAN-CGAINILVDMLHSSETKIQENAVTALLNL 473 (689)
Q Consensus 402 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s~~n-------r~~i~~-~g~I~~Lv~lL~s~~~~v~~~Al~aL~nL 473 (689)
.++-+..+|+.++..+++.|..|+..++...+.+... -.++.. .+.+..+..-+ .+++.+...+-+|..|
T Consensus 46 lk~dLellVervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrphy~~Lk~i~~~~--~~~n~Kk~laDIlSvL 123 (878)
T KOG2005|consen 46 LKGDLELLVERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFLRPHYGVLKEIYESM--ADSNLKKWLADILSVL 123 (878)
T ss_pred hhhhHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhhccchhHHHHHHHhc--cCchhHhHHHHHHHHH
Confidence 4677899999999999999999999999887754322 111111 13333333222 3455667777777777
Q ss_pred hcC
Q 005598 474 SIN 476 (689)
Q Consensus 474 s~~ 476 (689)
+..
T Consensus 124 amt 126 (878)
T KOG2005|consen 124 AMT 126 (878)
T ss_pred hee
Confidence 654
No 466
>PHA03096 p28-like protein; Provisional
Probab=23.47 E-value=48 Score=35.10 Aligned_cols=44 Identities=20% Similarity=0.354 Sum_probs=30.4
Q ss_pred cccccccccccC-ce-------ecCCCccccHHHHHHHHhcCC--CCCCCCCCc
Q 005598 101 FCCPLSLELMTD-PV-------IVASGQTYERAFIKKWIDLGL--FVCPKTRQT 144 (689)
Q Consensus 101 f~CpI~~~lm~d-PV-------~~~~G~ty~r~~I~~~l~~~~--~~cP~t~~~ 144 (689)
-.|-||++.-.+ |+ +..|.|+||-.||..|-.... .+||.|+..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~ 232 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL 232 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence 569999864332 22 236899999999999986542 347777653
No 467
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=23.03 E-value=24 Score=27.32 Aligned_cols=12 Identities=25% Similarity=0.587 Sum_probs=6.4
Q ss_pred CCCCCCCcCCCC
Q 005598 137 VCPKTRQTLAHT 148 (689)
Q Consensus 137 ~cP~t~~~l~~~ 148 (689)
.||+|+.+|+..
T Consensus 22 ~CPlC~r~l~~e 33 (54)
T PF04423_consen 22 CCPLCGRPLDEE 33 (54)
T ss_dssp E-TTT--EE-HH
T ss_pred cCCCCCCCCCHH
Confidence 799999988763
No 468
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=23.01 E-value=3.9e+02 Score=29.09 Aligned_cols=96 Identities=14% Similarity=0.028 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcC----------CCHHHHHHHHHHHHhhhhchHHHHHHHHhC
Q 005598 500 SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGN----------GTPRGKKDAATALFNLSIYHENKARIVQAG 569 (689)
Q Consensus 500 ~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~----------~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G 569 (689)
+.......+.++..|..++.......-.-.++.++.++-. ....++..|+.+|..++..-.....-+...
T Consensus 230 nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~r 309 (343)
T cd08050 230 NLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPR 309 (343)
T ss_pred cHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHH
Confidence 3445556666667776666554444334467777766631 235788888899888887333222223444
Q ss_pred cHHHHHHhc-CCChHHH--HHHHHHHHHH
Q 005598 570 AVKHLVDLM-DPAAGMV--DKAVAVLANL 595 (689)
Q Consensus 570 ~v~~Lv~LL-~~~~~v~--e~Al~~L~nL 595 (689)
++..|.+.| ++..... -.|+..|..|
T Consensus 310 i~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 310 ITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 555666655 4433322 3344444443
No 469
>TIGR00627 tfb4 transcription factor tfb4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.98 E-value=53 Score=34.72 Aligned_cols=12 Identities=25% Similarity=0.833 Sum_probs=5.5
Q ss_pred cccccccccccC
Q 005598 101 FCCPLSLELMTD 112 (689)
Q Consensus 101 f~CpI~~~lm~d 112 (689)
|.||+|+.+|.+
T Consensus 256 yvCs~Clsi~C~ 267 (279)
T TIGR00627 256 FVCSVCLSVLCQ 267 (279)
T ss_pred EECCCccCCcCC
Confidence 444444444443
No 470
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=22.96 E-value=57 Score=25.50 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=17.9
Q ss_pred cccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCc
Q 005598 101 FCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQT 144 (689)
Q Consensus 101 f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~ 144 (689)
+.||+|+.--+.-|.-.+- +.+-+-.||.|++.
T Consensus 5 i~CP~CgnKTR~kir~DT~-----------LkNfPlyCpKCK~E 37 (55)
T PF14205_consen 5 ILCPICGNKTRLKIREDTV-----------LKNFPLYCPKCKQE 37 (55)
T ss_pred EECCCCCCccceeeecCce-----------eccccccCCCCCce
Confidence 6799998544333321110 11124569999875
No 471
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=22.87 E-value=1.6e+02 Score=31.33 Aligned_cols=55 Identities=24% Similarity=0.410 Sum_probs=42.3
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC--------------cccHHHHHhcCcHHHHHHhhc
Q 005598 402 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHN--------------MDNRMVIANCGAINILVDMLH 456 (689)
Q Consensus 402 ~~~~V~~Lv~~L~s~~~~~q~~Al~~L~~La~~s--------------~~nr~~i~~~g~I~~Lv~lL~ 456 (689)
....|..++..|.+.+...+..|+.+|.-++.+. ..|-..+.+.|+++.|+.+|.
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4578999999999999888999999999888653 223344566788888877774
No 472
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=22.64 E-value=97 Score=27.88 Aligned_cols=42 Identities=12% Similarity=0.202 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhcCCccHHHHHHcCCHHHHHHHHcCCCHHHH
Q 005598 463 QENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEAR 504 (689)
Q Consensus 463 ~~~Al~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~s~~~~~~ 504 (689)
....+..|..|+..++.-..+++.|+++.|+.+|.+.+.++.
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 356677888888888888899999999999999998876653
No 473
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=22.39 E-value=17 Score=37.26 Aligned_cols=64 Identities=14% Similarity=0.055 Sum_probs=53.2
Q ss_pred CCCCCCCccccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCCCCccHHHHH
Q 005598 93 SPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKA 158 (689)
Q Consensus 93 ~~~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~l~pn~~l~~ 158 (689)
....+|..|.|-|. .+|+.=.+.|.|-+|.+.-+.-|++.. ...|+|.......+|.||.....
T Consensus 18 nk~f~~k~y~~ai~-~y~raI~~nP~~~~Y~tnralchlk~~-~~~~v~~dcrralql~~N~vk~h 81 (284)
T KOG4642|consen 18 NKCFIPKRYDDAID-CYSRAICINPTVASYYTNRALCHLKLK-HWEPVEEDCRRALQLDPNLVKAH 81 (284)
T ss_pred ccccchhhhchHHH-HHHHHHhcCCCcchhhhhHHHHHHHhh-hhhhhhhhHHHHHhcChHHHHHH
Confidence 35568999999999 999998889999999999999999965 44788777777778999976543
No 474
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=22.08 E-value=74 Score=31.34 Aligned_cols=37 Identities=19% Similarity=0.565 Sum_probs=28.6
Q ss_pred ccccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcC
Q 005598 100 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTL 145 (689)
Q Consensus 100 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l 145 (689)
-+.||.++.+|-|-+ |-=-+.+|-.|+.. ||......
T Consensus 87 IYICPFTGKVF~DNt-----~~nPQDAIYDWvSk----CPeN~ER~ 123 (238)
T PF10915_consen 87 IYICPFTGKVFGDNT-----HPNPQDAIYDWVSK----CPENTERQ 123 (238)
T ss_pred EEEcCCcCccccCCC-----CCChHHHHHHHHhh----CCccchhc
Confidence 389999999999875 33348999999864 89876554
No 475
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=21.85 E-value=49 Score=25.88 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=20.0
Q ss_pred ccccccccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCCCC
Q 005598 100 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT 149 (689)
Q Consensus 100 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~~~ 149 (689)
.|.||.|+.-+.=|=... |-. -.||.|+..|.-..
T Consensus 2 ~~~CP~CG~~iev~~~~~-Gei--------------V~Cp~CGaeleVv~ 36 (54)
T TIGR01206 2 QFECPDCGAEIELENPEL-GEL--------------VICDECGAELEVVS 36 (54)
T ss_pred ccCCCCCCCEEecCCCcc-CCE--------------EeCCCCCCEEEEEe
Confidence 378999998443221111 222 24999998875433
No 476
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.52 E-value=1.3e+03 Score=30.29 Aligned_cols=116 Identities=11% Similarity=0.027 Sum_probs=72.0
Q ss_pred HHHHhCcHHHHHHhc-C---CChHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHhccC--CHHHHHHHHHHHHHHh
Q 005598 564 RIVQAGAVKHLVDLM-D---PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG--SARGKENAAAALLQLC 637 (689)
Q Consensus 564 ~lv~~G~v~~Lv~LL-~---~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~v~~Lv~lL~s~--s~~~~e~Av~aL~~L~ 637 (689)
..++-.++|.+-+++ + +.....+-.+..+...-.+....+.....+....++....+. +...+..-..+|.+-.
T Consensus 1535 ~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~LV~~glks~~D~ql~~~~~~~~~~lsf~sS~l~~~~S~~LIL~~L~~~V 1614 (1758)
T KOG1791|consen 1535 KIVDLQGIPIFHRFFYSSVFEHHTEREWVLELVSKGLKSCPDYQLLQIRNIFETLLSFYSSPLASEESKRLILATLQKGV 1614 (1758)
T ss_pred hhcccCCCccHHHHHHhccccccchhhhhHHHHHHHhcCchhhhHHhhcCcceEeehhhcchhHHHHHHHHHHHHHHhcC
Confidence 345566667666666 2 122245556666666666677777777788877777776542 4455555555665555
Q ss_pred hCCHhhHHHHHhCCChHHHHHhhhcCC--HHHHHH-HHHHHHHhh
Q 005598 638 TNSSRFCSMVLQEGAVPPLVALSQSGT--PRAKEK-AQALLSYFR 679 (689)
Q Consensus 638 ~~~~~~~~~lv~~g~i~~L~~LL~~~~--~~vr~~-A~~lL~~L~ 679 (689)
.........+-..|.+..+..++.++. +..++. -..++..++
T Consensus 1615 k~p~~a~~mle~~Gl~sWi~niI~s~~~k~~~~~~l~~~v~~~l~ 1659 (1758)
T KOG1791|consen 1615 KFPFYAYEMLEVPGLFSWILNIIPSSFLKPVLLKALVISVLKVLW 1659 (1758)
T ss_pred CCcHHHHHHHhcccHHHHHHHhccccccchHHHhhhHHHHHHHHH
Confidence 544445566666899999999999985 444433 333555444
No 477
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=21.36 E-value=3.7e+02 Score=24.33 Aligned_cols=61 Identities=16% Similarity=0.186 Sum_probs=41.6
Q ss_pred HHHHHHHhccCC----HHHHHHHHHHHHHHhhCCHhhHHHHHhCCChHHHHHhhhcCCHHHHHHHHHHH
Q 005598 611 IPVLVEVVELGS----ARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALL 675 (689)
Q Consensus 611 v~~Lv~lL~s~s----~~~~e~Av~aL~~L~~~~~~~~~~lv~~g~i~~L~~LL~~~~~~vr~~A~~lL 675 (689)
+..+.+.+.... ......+..++......-+ ...+.+.+.++.++.++.+. ..+..|.++|
T Consensus 84 ~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 84 LEILSQILSQSSSEANEELVKAALKCLKSWISWIP--IELIINSNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 444555554332 7788889999988887543 35666778999999999544 3477777765
No 478
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=21.19 E-value=22 Score=26.06 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=13.9
Q ss_pred CCCccccHHHHHHHHhcCCCCCCCCCC
Q 005598 117 ASGQTYERAFIKKWIDLGLFVCPKTRQ 143 (689)
Q Consensus 117 ~~G~ty~r~~I~~~l~~~~~~cP~t~~ 143 (689)
.|||+|+...= .-+.....||.|+.
T Consensus 10 ~Cg~~fe~~~~--~~~~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQS--ISEDDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEEE--cCCCCCCcCCCCCC
Confidence 56777754321 11123356999998
No 479
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=20.83 E-value=1.1e+03 Score=27.36 Aligned_cols=97 Identities=13% Similarity=-0.095 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhhhhchHHHHHHHHhCcHHHHHHhc-----------CCChHHHHHHHHHHHHHhCCchhHHHHHhcCc
Q 005598 542 PRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-----------DPAAGMVDKAVAVLANLATIPDGRVAIGQENG 610 (689)
Q Consensus 542 ~~v~~~Al~aL~nLs~~~~n~~~lv~~G~v~~Lv~LL-----------~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~ 610 (689)
-......+..++.|..++...-.-.-..++|.++..+ +....+.+-|+.+|..+|..-...-.-.+..+
T Consensus 261 L~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Ri 340 (576)
T KOG2549|consen 261 LELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRI 340 (576)
T ss_pred HHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3444555556666666655544444455666666643 23345778888888888874333222244455
Q ss_pred HHHHHHHhccC--CHHHHHHHHHHHHHHhh
Q 005598 611 IPVLVEVVELG--SARGKENAAAALLQLCT 638 (689)
Q Consensus 611 v~~Lv~lL~s~--s~~~~e~Av~aL~~L~~ 638 (689)
+..+.+.+... ......-|+..|..|..
T Consensus 341 t~tl~k~l~D~~~~~st~YGai~gL~~lg~ 370 (576)
T KOG2549|consen 341 TRTLSKALLDNKKPLSTHYGAIAGLSELGH 370 (576)
T ss_pred HHHHHHHhcCCCCCchhhhhHHHHHHHhhh
Confidence 66666666542 44555555666655543
No 480
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=20.60 E-value=90 Score=33.10 Aligned_cols=52 Identities=21% Similarity=0.363 Sum_probs=33.8
Q ss_pred CCCccccccccccc--------------cCce-----ecCCCccccHHHHHHHHhc----C----CCCCCCCCCcCCCC
Q 005598 97 IPSDFCCPLSLELM--------------TDPV-----IVASGQTYERAFIKKWIDL----G----LFVCPKTRQTLAHT 148 (689)
Q Consensus 97 ~p~~f~CpI~~~lm--------------~dPV-----~~~~G~ty~r~~I~~~l~~----~----~~~cP~t~~~l~~~ 148 (689)
=+.+-.||+|+.+= -|+= ..||||........=|-+- | +..||+|.+.|..+
T Consensus 338 g~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 338 GQRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred CcccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 35678899998742 1111 2489998877776666443 2 12499999888654
No 481
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=20.46 E-value=1.3e+03 Score=26.77 Aligned_cols=79 Identities=10% Similarity=-0.087 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHhcccCchhHHHHHhhCChHHHHHhhcC----------CCHHHHHHHHHHHHhhhhchHHHHHHHHhC
Q 005598 500 SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGN----------GTPRGKKDAATALFNLSIYHENKARIVQAG 569 (689)
Q Consensus 500 ~~~~~~~Aa~aL~nLs~~~~~k~~I~~~g~I~~Lv~LL~~----------~~~~v~~~Al~aL~nLs~~~~n~~~lv~~G 569 (689)
+.+...+.+..+++|..++.....-.-.-.+|.++.++-+ ....++.-|+.++..++.+-.....-+...
T Consensus 260 nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~R 339 (576)
T KOG2549|consen 260 NLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPR 339 (576)
T ss_pred cHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4556666777777777666654444444566666666542 234577788888888888666555557777
Q ss_pred cHHHHHHhc
Q 005598 570 AVKHLVDLM 578 (689)
Q Consensus 570 ~v~~Lv~LL 578 (689)
++..|.+.|
T Consensus 340 it~tl~k~l 348 (576)
T KOG2549|consen 340 ITRTLSKAL 348 (576)
T ss_pred HHHHHHHHh
Confidence 778888877
No 482
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=20.22 E-value=75 Score=41.21 Aligned_cols=42 Identities=33% Similarity=0.543 Sum_probs=29.4
Q ss_pred CCCCCCcccccccc--ccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCcCCC
Q 005598 94 PVPIPSDFCCPLSL--ELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 147 (689)
Q Consensus 94 ~~~~p~~f~CpI~~--~lm~dPV~~~~G~ty~r~~I~~~l~~~~~~cP~t~~~l~~ 147 (689)
--++|.++.||=|. +.+.|+ ...||.-. -...||.|+.++..
T Consensus 902 VdPL~phy~C~~C~~~ef~~~~-~~~sG~Dl-----------pdk~Cp~Cg~~~~k 945 (1437)
T PRK00448 902 VNPLPPHYVCPNCKYSEFFTDG-SVGSGFDL-----------PDKDCPKCGTKLKK 945 (1437)
T ss_pred cCCCCccccCcccccccccccc-cccccccC-----------ccccCccccccccc
Confidence 34689999999998 555555 34556543 33569999998754
No 483
>TIGR03847 conserved hypothetical protein. The conserved hypothetical protein described here occurs as part of the trio of uncharacterized proteins common in the Actinobacteria.
Probab=20.13 E-value=1e+02 Score=30.09 Aligned_cols=22 Identities=18% Similarity=0.424 Sum_probs=16.6
Q ss_pred HhcCCCCCCCCCCcCCCC-CCCc
Q 005598 131 IDLGLFVCPKTRQTLAHT-TLIP 152 (689)
Q Consensus 131 l~~~~~~cP~t~~~l~~~-~l~p 152 (689)
...|...||.|++|+... ++.|
T Consensus 152 VaAGRP~CPlCg~PldP~GH~Cp 174 (177)
T TIGR03847 152 VAAGRPPCPLCGRPIDPDGHICP 174 (177)
T ss_pred HhCCCCCCCCCCCCCCCCCccCC
Confidence 455777899999999864 5554
No 484
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.13 E-value=68 Score=36.23 Aligned_cols=36 Identities=11% Similarity=0.262 Sum_probs=30.8
Q ss_pred CCccccccccccccC-ceecCCCccccHHHHHHHHhc
Q 005598 98 PSDFCCPLSLELMTD-PVIVASGQTYERAFIKKWIDL 133 (689)
Q Consensus 98 p~~f~CpI~~~lm~d-PV~~~~G~ty~r~~I~~~l~~ 133 (689)
.....|.||.+-..+ .+.+.|||-||..|+..++..
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 456899999988875 566799999999999999875
Done!