Query 005599
Match_columns 688
No_of_seqs 418 out of 3493
Neff 9.1
Searched_HMMs 29240
Date Tue Mar 26 18:58:10 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005599.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2102-2106//hhsearch_pdb/005599hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoj_A High affinity nerve gro 1.0 1 1 403.1 14.2 262 370-649 40-320 (329)
2 4asz_A BDNF/NT-3 growth factor 1.0 1 1 398.7 11.9 260 370-647 12-288 (299)
3 4gt4_A Tyrosine-protein kinase 1.0 1 1 397.3 15.0 259 372-648 27-306 (308)
4 4ase_A Vascular endothelial gr 1.0 1 1 383.3 11.9 269 362-647 55-346 (353)
5 3omv_A RAF proto-oncogene seri 1.0 1 1 382.5 19.0 261 369-647 34-299 (307)
6 4b9d_A Serine/threonine-protei 1.0 1 1 380.2 13.8 250 371-641 24-276 (350)
7 4fie_A Serine/threonine-protei 1.0 1 1 377.7 18.5 250 370-641 150-400 (423)
8 4fih_A Serine/threonine-protei 1.0 1 1 377.0 16.8 249 371-641 74-323 (346)
9 4aw0_A HPDK1, 3-phosphoinositi 1.0 1 1 371.3 10.9 249 370-640 31-283 (311)
10 4g3f_A NF-kappa-beta-inducing 1.0 1 1 369.3 16.0 253 370-646 57-314 (336)
No 1
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=403.12 Aligned_cols=262 Identities=26% Similarity=0.412 Sum_probs=216.9
Q ss_pred HCCCCCCCCCCCCCCEEEEEEEEC------CCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEE
Q ss_conf 239997881033783839999957------99689999804789206899999999986047998111578998489326
Q 005599 370 TDNFSTSNKLGQGGFGPVYKGKLA------NGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLVKLLGCCLEKDEKM 443 (688)
Q Consensus 370 ~~~f~~~~~lg~G~fg~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 443 (688)
.++|.+.++||+|+||.||+|++. ++..||||+++.......++|.+|+.++.+++|||||+++|+|.+....+
T Consensus 40 ~~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~ 119 (329)
T 4aoj_A 40 RRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLL 119 (329)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEE
T ss_pred HHHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEE
T ss_conf 89928877971477848998998786657789699999977579799999999999998589989996989999899899
Q ss_pred EEEECCCCCCHHHHHHCCC------------CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCC
Q ss_conf 9996169999556733038------------8788998889999999999989844089997575578999458779998
Q 005599 444 LIYEFMPNKSLDYFIFDES------------RKQLLDWKKRFDIILGIARGVLYLHQDSRLRIIHRDLKASNILLDEEMN 511 (688)
Q Consensus 444 lv~e~~~~gsL~~~l~~~~------------~~~~l~~~~~~~i~~~ia~~L~~LH~~~~~~iiH~Dlkp~Nill~~~~~ 511 (688)
+||||+++|+|.+++.... ....++|..++.++.|||.||.|||+.+ |+||||||+||||++++.
T Consensus 120 lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLKp~NILl~~~~~ 196 (329)
T 4aoj_A 120 MVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH---FVHRDLATRNCLVGQGLV 196 (329)
T ss_dssp EEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTTE
T ss_pred EEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC---EECCCCCHHHEEECCCCC
T ss_conf 99982799939999986075410012211245788999999999999999999984088---422666676489889996
Q ss_pred CEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHH-CCCCCCCCCCCCCCHHHHHH
Q ss_conf 10013112100279753112234345577337101138988974652448999999881-99999888889831789999
Q 005599 512 PRISDFGTARVFGGEEISTNTNRVVGTYGYMSPEYALGGLFSTKSDVFSFGVLLLEIIT-GKKNTGIFNDDSSNLIRYVW 590 (688)
Q Consensus 512 ~kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt-g~~p~~~~~~~~~~~~~~~~ 590 (688)
+||+|||+++...............||+.|||||++.+..++.++|||||||++|||+| |+.||.... .......+.
T Consensus 197 ~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~--~~~~~~~i~ 274 (329)
T 4aoj_A 197 VKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLS--NTEAIDCIT 274 (329)
T ss_dssp EEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSC--HHHHHHHHH
T ss_pred EEECCCCCCEECCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC--HHHHHHHHH
T ss_conf 897666033365678753004764556566582654479999663001057899999828999999989--999999998
Q ss_pred HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 98246643211343246999989999999998415359988999978999982289999
Q 005599 591 ELWSDDKALEIVDSSMADSCPAPEALRCIQVGLLCVQDRTTDRPSMSTVVFMLSNETSV 649 (688)
Q Consensus 591 ~~~~~~~~~~~id~~l~~~~~~~~~~~l~~l~~~cl~~~p~~RPs~~evl~~L~~~~~~ 649 (688)
. +. +...|...+.++.+|+.+||+.||++||||.||++.|+.+...
T Consensus 275 ---~-g~---------~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~ 320 (329)
T 4aoj_A 275 ---Q-GR---------ELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQA 320 (329)
T ss_dssp ---H-TC---------CCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred ---C-CC---------CCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHC
T ss_conf ---0-89---------8998644639999999997475965792999999999987458
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=398.73 Aligned_cols=260 Identities=28% Similarity=0.447 Sum_probs=216.0
Q ss_pred HCCCCCCCCCCCCCCEEEEEEEEC------CCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEE
Q ss_conf 239997881033783839999957------99689999804789206899999999986047998111578998489326
Q 005599 370 TDNFSTSNKLGQGGFGPVYKGKLA------NGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLVKLLGCCLEKDEKM 443 (688)
Q Consensus 370 ~~~f~~~~~lg~G~fg~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 443 (688)
.++|.+.+.||+|+||+||+|++. ++..||||+++.......++|.+|+.++.+++|||||+++|+|.+.+..+
T Consensus 12 r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~ 91 (299)
T 4asz_A 12 RHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLI 91 (299)
T ss_dssp GGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEE
T ss_pred HHHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEE
T ss_conf 88929824982078829999998776667788799999967778589999999999998589988862879995699899
Q ss_pred EEEECCCCCCHHHHHHCC----------CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCCE
Q ss_conf 999616999955673303----------8878899888999999999998984408999757557899945877999810
Q 005599 444 LIYEFMPNKSLDYFIFDE----------SRKQLLDWKKRFDIILGIARGVLYLHQDSRLRIIHRDLKASNILLDEEMNPR 513 (688)
Q Consensus 444 lv~e~~~~gsL~~~l~~~----------~~~~~l~~~~~~~i~~~ia~~L~~LH~~~~~~iiH~Dlkp~Nill~~~~~~k 513 (688)
+||||+++|+|.+++... .....++|..++.++.|||.||.|||+.+ |+||||||+||||++++.+|
T Consensus 92 lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDlKp~NILl~~~~~~K 168 (299)
T 4asz_A 92 MVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQH---FVHRDLATRNCLVGENLLVK 168 (299)
T ss_dssp EEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEE
T ss_pred EEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEE
T ss_conf 999858999689999860864211123577788999999999999999999997599---04676577638987998689
Q ss_pred ECCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 013112100279753112234345577337101138988974652448999999881-9999988888983178999998
Q 005599 514 ISDFGTARVFGGEEISTNTNRVVGTYGYMSPEYALGGLFSTKSDVFSFGVLLLEIIT-GKKNTGIFNDDSSNLIRYVWEL 592 (688)
Q Consensus 514 l~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt-g~~p~~~~~~~~~~~~~~~~~~ 592 (688)
|+|||+|+...............||+.|||||++.+..|+.++|||||||++|||+| |+.||.... ...+...+
T Consensus 169 i~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~--~~~~~~~i--- 243 (299)
T 4asz_A 169 IGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLS--NNEVIECI--- 243 (299)
T ss_dssp ECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC--HHHHHHHH---
T ss_pred ECCCCCCEECCCCCCEEECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC--HHHHHHHH---
T ss_conf 8873001006788741664751347010388987079997036677889999999808999999989--99999999---
Q ss_pred HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 2466432113432469999899999999984153599889999789999822899
Q 005599 593 WSDDKALEIVDSSMADSCPAPEALRCIQVGLLCVQDRTTDRPSMSTVVFMLSNET 647 (688)
Q Consensus 593 ~~~~~~~~~id~~l~~~~~~~~~~~l~~l~~~cl~~~p~~RPs~~evl~~L~~~~ 647 (688)
. .+. ....|...+.++.+|+.+||+.||++||||.+|++.|+++.
T Consensus 244 ~-~~~---------~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~ 288 (299)
T 4asz_A 244 T-QGR---------VLQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLA 288 (299)
T ss_dssp H-HTC---------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred H-CCC---------CCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHH
T ss_conf 8-089---------88997414399999999976879668929999999998777
No 3
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=397.32 Aligned_cols=259 Identities=27% Similarity=0.430 Sum_probs=212.6
Q ss_pred CCCCCCCCCCCCCEEEEEEEEC------CCCEEEEEECCCC-CCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEE
Q ss_conf 9997881033783839999957------9968999980478-92068999999999860479981115789984893269
Q 005599 372 NFSTSNKLGQGGFGPVYKGKLA------NGQEIAVKRLSTT-SGQGIEEFKNEVLLIAKLQHRNLVKLLGCCLEKDEKML 444 (688)
Q Consensus 372 ~f~~~~~lg~G~fg~Vy~~~~~------~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 444 (688)
++.+.++||+|+||+||+|.+. +++.||||+++.. .....++|.+|+.++.+++|||||+++|+|.+.+..++
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~l 106 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSM 106 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred HCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEE
T ss_conf 88586691358884899999857765888869999998801496899999999999985899898773649988998899
Q ss_pred EEECCCCCCHHHHHHCCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCC
Q ss_conf 9961699995567330388-------------788998889999999999989844089997575578999458779998
Q 005599 445 IYEFMPNKSLDYFIFDESR-------------KQLLDWKKRFDIILGIARGVLYLHQDSRLRIIHRDLKASNILLDEEMN 511 (688)
Q Consensus 445 v~e~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~~L~~LH~~~~~~iiH~Dlkp~Nill~~~~~ 511 (688)
||||+++|+|.++|..... ...++|..++.++.|||.||.|||+.+ |+||||||+||||++++.
T Consensus 107 V~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLK~~NILl~~~~~ 183 (308)
T 4gt4_A 107 IFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHH---VVHKDLATRNVLVYDKLN 183 (308)
T ss_dssp EEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGC
T ss_pred EEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCEEECCCCC
T ss_conf 99818999499999862765433332211112468999999999999999999998689---977873623068879997
Q ss_pred CEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHH-CCCCCCCCCCCCCCHHHHHH
Q ss_conf 10013112100279753112234345577337101138988974652448999999881-99999888889831789999
Q 005599 512 PRISDFGTARVFGGEEISTNTNRVVGTYGYMSPEYALGGLFSTKSDVFSFGVLLLEIIT-GKKNTGIFNDDSSNLIRYVW 590 (688)
Q Consensus 512 ~kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt-g~~p~~~~~~~~~~~~~~~~ 590 (688)
+||+|||+++.....+.........||+.|+|||++.+..++.++|||||||++|||+| |+.||.... ..+...
T Consensus 184 ~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~-----~~~~~~ 258 (308)
T 4gt4_A 184 VKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYS-----NQDVVE 258 (308)
T ss_dssp EEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCC-----HHHHHH
T ss_pred EEECCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC-----HHHHHH
T ss_conf 898876020233677740473451257765698998279999630001579999999968999999989-----999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 9824664321134324699998999999999841535998899997899998228999
Q 005599 591 ELWSDDKALEIVDSSMADSCPAPEALRCIQVGLLCVQDRTTDRPSMSTVVFMLSNETS 648 (688)
Q Consensus 591 ~~~~~~~~~~~id~~l~~~~~~~~~~~l~~l~~~cl~~~p~~RPs~~evl~~L~~~~~ 648 (688)
.. ..+. ....|...+..+.+|+.+||+.||++||||.+|++.|+....
T Consensus 259 ~i-~~~~---------~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~~n 306 (308)
T 4gt4_A 259 MI-RNRQ---------VLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAWGN 306 (308)
T ss_dssp HH-HTTC---------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSCC
T ss_pred HH-HCCC---------CCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHCCC
T ss_conf 99-8199---------899962036999999999758796579299999999985318
No 4
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=383.31 Aligned_cols=269 Identities=28% Similarity=0.390 Sum_probs=215.2
Q ss_pred EHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECC------CCEEEEEECCCCC-CCCHHHHHHHHHHHHHCCC-CCCCCEE
Q ss_conf 057899872399978810337838399999579------9689999804789-2068999999999860479-9811157
Q 005599 362 ELSTVLAATDNFSTSNKLGQGGFGPVYKGKLAN------GQEIAVKRLSTTS-GQGIEEFKNEVLLIAKLQH-RNLVKLL 433 (688)
Q Consensus 362 ~~~~~~~~~~~f~~~~~lg~G~fg~Vy~~~~~~------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h-~niv~l~ 433 (688)
...+.+...++|++.+.||+|+||.||+|.... ++.||||++.... ....+.|.+|+.++.+++| ||||+++
T Consensus 55 ~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~ 134 (353)
T 4ase_A 55 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL 134 (353)
T ss_dssp CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred CCCCCEECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 88551705799598209821789599999986888544775999999762358689999999999999757998487788
Q ss_pred EEEEEC-CCEEEEEECCCCCCHHHHHHCCC-------------CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCC
Q ss_conf 899848-93269996169999556733038-------------8788998889999999999989844089997575578
Q 005599 434 GCCLEK-DEKMLIYEFMPNKSLDYFIFDES-------------RKQLLDWKKRFDIILGIARGVLYLHQDSRLRIIHRDL 499 (688)
Q Consensus 434 ~~~~~~-~~~~lv~e~~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~ia~~L~~LH~~~~~~iiH~Dl 499 (688)
|+|.+. +..++|||||++|+|.++|.... ....+++..++.++.|||.||.|||+.+ |+||||
T Consensus 135 g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~---iiHRDL 211 (353)
T 4ase_A 135 GACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRDL 211 (353)
T ss_dssp EEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTT---CCCSCC
T ss_pred EEEEECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC---EECCCC
T ss_conf 99994697799999838989799999743566654333410110356899999999999999987676278---435746
Q ss_pred CCCCEEECCCCCCEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHH-CCCCCCCC
Q ss_conf 99945877999810013112100279753112234345577337101138988974652448999999881-99999888
Q 005599 500 KASNILLDEEMNPRISDFGTARVFGGEEISTNTNRVVGTYGYMSPEYALGGLFSTKSDVFSFGVLLLEIIT-GKKNTGIF 578 (688)
Q Consensus 500 kp~Nill~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt-g~~p~~~~ 578 (688)
||+|||+++++.+||+|||+|+.+.............||+.|||||++.+..|+.++|||||||++|||+| |+.||...
T Consensus 212 K~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~ 291 (353)
T 4ase_A 212 AARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGV 291 (353)
T ss_dssp SGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC
T ss_pred CCCCEEECCCCCEEECCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCC
T ss_conf 72113057999789796543222456887203254014666569899946999975537406899999981899999998
Q ss_pred CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 889831789999982466432113432469999899999999984153599889999789999822899
Q 005599 579 NDDSSNLIRYVWELWSDDKALEIVDSSMADSCPAPEALRCIQVGLLCVQDRTTDRPSMSTVVFMLSNET 647 (688)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~id~~l~~~~~~~~~~~l~~l~~~cl~~~p~~RPs~~evl~~L~~~~ 647 (688)
... ..+... ...+ .+...|...+.++.+++.+||+.||++|||+.+|++.|+.+.
T Consensus 292 ~~~-~~~~~~----i~~g---------~~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~ll 346 (353)
T 4ase_A 292 KID-EEFCRR----LKEG---------TRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLL 346 (353)
T ss_dssp CCS-HHHHHH----HHHT---------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CHH-HHHHHH----HHCC---------CCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHH
T ss_conf 989-999999----9738---------988888657899999999976869667939999999999999
No 5
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=382.52 Aligned_cols=261 Identities=26% Similarity=0.416 Sum_probs=207.4
Q ss_pred HHCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCC--CCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEE
Q ss_conf 72399978810337838399999579968999980478--9206899999999986047998111578998489326999
Q 005599 369 ATDNFSTSNKLGQGGFGPVYKGKLANGQEIAVKRLSTT--SGQGIEEFKNEVLLIAKLQHRNLVKLLGCCLEKDEKMLIY 446 (688)
Q Consensus 369 ~~~~f~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 446 (688)
..+++.+.++||+|+||+||+|++. ..||||+++.. .....+.|.+|+.++.+++|||||+++|++.+ +..++||
T Consensus 34 ~~~~l~l~~~iG~G~fG~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVm 110 (307)
T 3omv_A 34 EASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVT 110 (307)
T ss_dssp CTTSCCEEEECCCCSSSEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEE
T ss_pred CHHHEEEEEEEEECCCCEEEEEEEC--CCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CEEEEEE
T ss_conf 4799498449820888689999989--968999997268999999999999999985899887469999978-9589999
Q ss_pred ECCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCCEECCCCCCEECCCC
Q ss_conf 61699995567330388788998889999999999989844089997575578999458779998100131121002797
Q 005599 447 EFMPNKSLDYFIFDESRKQLLDWKKRFDIILGIARGVLYLHQDSRLRIIHRDLKASNILLDEEMNPRISDFGTARVFGGE 526 (688)
Q Consensus 447 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~~~~iiH~Dlkp~Nill~~~~~~kl~Dfgla~~~~~~ 526 (688)
||+++|+|.+++... ...+++..++.++.|||.||.|||+.+ |+||||||+||||++++.+||+|||+|+.....
T Consensus 111 Ey~~gGsL~~~l~~~--~~~l~~~~~~~i~~qia~gL~yLH~~~---IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~ 185 (307)
T 3omv_A 111 QWCEGSSLYKHLHVQ--ETKFQMFQLIDIARQTAQGMDYLHAKN---IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRW 185 (307)
T ss_dssp ECCSSCBHHHHHHTS--CCCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCCSSSEEEETTEEEEECCCSSCBC----
T ss_pred ECCCCCCHHHHHHHC--CCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEEECCCCEECCCC
T ss_conf 748998788987524--899999999999999999999997799---527855789978889990899441575424667
Q ss_pred CCCCCCCCCCCCCCCCCCEEECC---CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 53112234345577337101138---988974652448999999881999998888898317899999824664321134
Q 005599 527 EISTNTNRVVGTYGYMSPEYALG---GLFSTKSDVFSFGVLLLEIITGKKNTGIFNDDSSNLIRYVWELWSDDKALEIVD 603 (688)
Q Consensus 527 ~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~DvwSlG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~id 603 (688)
..........||+.|||||++.+ ..|+.++|||||||++|||+||+.||..... . ..+......+ ...
T Consensus 186 ~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~--~---~~~~~~~~~~----~~~ 256 (307)
T 3omv_A 186 SGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINN--R---DQIIFMVGRG----YAS 256 (307)
T ss_dssp --------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCC--H---HHHHHHHHTT----CCC
T ss_pred CCCEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH--H---HHHHHHHHCC----CCC
T ss_conf 764031564468772498786146899878687757289999999978899899996--9---9999999658----888
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 32469999899999999984153599889999789999822899
Q 005599 604 SSMADSCPAPEALRCIQVGLLCVQDRTTDRPSMSTVVFMLSNET 647 (688)
Q Consensus 604 ~~l~~~~~~~~~~~l~~l~~~cl~~~p~~RPs~~evl~~L~~~~ 647 (688)
+.+ ...+...+..+.+|+.+||+.+|++||||.+|++.|+.+.
T Consensus 257 p~~-~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~ 299 (307)
T 3omv_A 257 PDL-SKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQ 299 (307)
T ss_dssp CCS-TTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHH
T ss_pred CCC-CCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHH
T ss_conf 872-0035445699999999975779768909899999999974
No 6
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=380.16 Aligned_cols=250 Identities=23% Similarity=0.369 Sum_probs=206.7
Q ss_pred CCCCCCCCCCCCCCEEEEEEEE-CCCCEEEEEECCCC--CCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEE
Q ss_conf 3999788103378383999995-79968999980478--92068999999999860479981115789984893269996
Q 005599 371 DNFSTSNKLGQGGFGPVYKGKL-ANGQEIAVKRLSTT--SGQGIEEFKNEVLLIAKLQHRNLVKLLGCCLEKDEKMLIYE 447 (688)
Q Consensus 371 ~~f~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 447 (688)
++|++.++||+|+||+||+|+. .+++.||||++... .....+.+.+|+.++.+++|||||++++++.+.+..++|||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 25588479702779399999988999899999986587897999999999999987799898919999998999999994
Q ss_pred CCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCCEECCCCCCEECCCCC
Q ss_conf 16999955673303887889988899999999999898440899975755789994587799981001311210027975
Q 005599 448 FMPNKSLDYFIFDESRKQLLDWKKRFDIILGIARGVLYLHQDSRLRIIHRDLKASNILLDEEMNPRISDFGTARVFGGEE 527 (688)
Q Consensus 448 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~~~~iiH~Dlkp~Nill~~~~~~kl~Dfgla~~~~~~~ 527 (688)
|+++|+|.+++... ....+++.....++.||+.||.|||+++ |+||||||+||||++++.+||+|||+|+......
T Consensus 104 y~~gg~L~~~i~~~-~~~~~~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~ 179 (350)
T 4b9d_A 104 YCEGGDLFKRINAQ-KGVLFQEDQILDWFVQICLALKHVHDRK---ILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTV 179 (350)
T ss_dssp CCTTCBHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHHHHHHTT---CEETTCCGGGEEECTTCCEEECSTTEESCCCHHH
T ss_pred CCCCCCHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHCC---EEECCCCHHHEEECCCCCEEECCCCCCEEECCCC
T ss_conf 88998399999973-8999978999999999999999999899---1513597899798789998976465214406885
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 31122343455773371011389889746524489999998819999988888983178999998246643211343246
Q 005599 528 ISTNTNRVVGTYGYMSPEYALGGLFSTKSDVFSFGVLLLEIITGKKNTGIFNDDSSNLIRYVWELWSDDKALEIVDSSMA 607 (688)
Q Consensus 528 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~l~ 607 (688)
......+||+.|+|||++.+..|+.++||||+||++|||++|+.||... ............. . +.
T Consensus 180 --~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~-----~~~~~~~~i~~~~-~-----~~-- 244 (350)
T 4b9d_A 180 --ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAG-----SMKNLVLKIISGS-F-----PP-- 244 (350)
T ss_dssp --HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS-----SHHHHHHHHHHTC-C-----CC--
T ss_pred --CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC-----CHHHHHHHHHCCC-C-----CC--
T ss_conf --4101457883603999987999895999999999999999787998996-----9999999998089-9-----99--
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 9999899999999984153599889999789999
Q 005599 608 DSCPAPEALRCIQVGLLCVQDRTTDRPSMSTVVF 641 (688)
Q Consensus 608 ~~~~~~~~~~l~~l~~~cl~~~p~~RPs~~evl~ 641 (688)
.+...+.++.+|+.+||+.||++|||+.|+++
T Consensus 245 --~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 245 --VSLHYSYDLRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp --CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred --CCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf --97557999999999985589667908999963
No 7
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=377.65 Aligned_cols=250 Identities=21% Similarity=0.328 Sum_probs=207.2
Q ss_pred HCCCCCCCCCCCCCCEEEEEEEEC-CCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEEC
Q ss_conf 239997881033783839999957-9968999980478920689999999998604799811157899848932699961
Q 005599 370 TDNFSTSNKLGQGGFGPVYKGKLA-NGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLVKLLGCCLEKDEKMLIYEF 448 (688)
Q Consensus 370 ~~~f~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 448 (688)
.+.|++.++||+|+||.||+|+.. +|+.||||++........+.+.+|+.+|..++|||||++++++.+.+..++||||
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy 229 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF 229 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred HHHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 68438616962481848999999999989999998625546899999999999857998987168999989999999969
Q ss_pred CCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCCEECCCCCCEECCCCCC
Q ss_conf 69999556733038878899888999999999998984408999757557899945877999810013112100279753
Q 005599 449 MPNKSLDYFIFDESRKQLLDWKKRFDIILGIARGVLYLHQDSRLRIIHRDLKASNILLDEEMNPRISDFGTARVFGGEEI 528 (688)
Q Consensus 449 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~~~~iiH~Dlkp~Nill~~~~~~kl~Dfgla~~~~~~~~ 528 (688)
+++|+|.+++.. ..+++.....++.||+.||.|||+++ |+||||||+||||+.++.+||+|||+|+.+....
T Consensus 230 ~~gG~L~~~i~~----~~l~e~~~~~~~~qil~aL~ylH~~~---IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~- 301 (423)
T 4fie_A 230 LEGGALTDIVTH----TRMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV- 301 (423)
T ss_dssp CTTEEHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSTTTEEECTTCCEEECCCTTCEECCSSC-
T ss_pred CCCCCHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHHHCC---EECCCCCHHHEEECCCCCEEEECCCCCEECCCCC-
T ss_conf 899828988761----69899999999999999999999889---0446578777898589998980372654777887-
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 11223434557733710113898897465244899999988199999888889831789999982466432113432469
Q 005599 529 STNTNRVVGTYGYMSPEYALGGLFSTKSDVFSFGVLLLEIITGKKNTGIFNDDSSNLIRYVWELWSDDKALEIVDSSMAD 608 (688)
Q Consensus 529 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~l~~ 608 (688)
......+||+.|||||++.+..|+.++|||||||++|||++|+.||... ........+.. . ..+.+.
T Consensus 302 -~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~--~~~~~~~~i~~---~------~~~~~~- 368 (423)
T 4fie_A 302 -PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE--PPLKAMKMIRD---N------LPPRLK- 368 (423)
T ss_dssp -CCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS--CHHHHHHHHHH---S------CCCCCS-
T ss_pred -CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC--CHHHHHHHHHC---C------CCCCCC-
T ss_conf -6434666474727999977999996899999999999999787998986--99999999972---7------998876-
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 999899999999984153599889999789999
Q 005599 609 SCPAPEALRCIQVGLLCVQDRTTDRPSMSTVVF 641 (688)
Q Consensus 609 ~~~~~~~~~l~~l~~~cl~~~p~~RPs~~evl~ 641 (688)
.....+.++.+|+.+||+.||++|||+.|+++
T Consensus 369 -~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 369 -NLHKVSPSLKGFLDRLLVRDPAQRATAAELLK 400 (423)
T ss_dssp -CTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred -CCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf -50129999999999986789568909999960
No 8
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=377.00 Aligned_cols=249 Identities=21% Similarity=0.326 Sum_probs=206.3
Q ss_pred CCCCCCCCCCCCCCEEEEEEEEC-CCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEECC
Q ss_conf 39997881033783839999957-99689999804789206899999999986047998111578998489326999616
Q 005599 371 DNFSTSNKLGQGGFGPVYKGKLA-NGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLVKLLGCCLEKDEKMLIYEFM 449 (688)
Q Consensus 371 ~~f~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 449 (688)
+.|++.++||+|+||.||+|+.. +++.||||++........+.+.+|+.++.+++|||||++++++.+.+..++||||+
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 75387079602728299999998999899999985276568999999999998679989991999999899999999698
Q ss_pred CCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCCEECCCCCCEECCCCCCC
Q ss_conf 99995567330388788998889999999999989844089997575578999458779998100131121002797531
Q 005599 450 PNKSLDYFIFDESRKQLLDWKKRFDIILGIARGVLYLHQDSRLRIIHRDLKASNILLDEEMNPRISDFGTARVFGGEEIS 529 (688)
Q Consensus 450 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~~~~iiH~Dlkp~Nill~~~~~~kl~Dfgla~~~~~~~~~ 529 (688)
++|+|.+++.. ..+++.....++.||+.||.|||+++ |+||||||+||||+.++.+||+|||+|+.+.....
T Consensus 154 ~gg~L~~~l~~----~~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~- 225 (346)
T 4fih_A 154 EGGALTDIVTH----TRMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP- 225 (346)
T ss_dssp TTEEHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSSSC-
T ss_pred CCCCHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEECCCCCEECCCCCC-
T ss_conf 99808999871----89899999999999999999999888---35562788997887999889902757536678877-
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 12234345577337101138988974652448999999881999998888898317899999824664321134324699
Q 005599 530 TNTNRVVGTYGYMSPEYALGGLFSTKSDVFSFGVLLLEIITGKKNTGIFNDDSSNLIRYVWELWSDDKALEIVDSSMADS 609 (688)
Q Consensus 530 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~l~~~ 609 (688)
.....+||+.|+|||++.+..|+.++||||+||++|||++|++||... ........+.. . ..+.+ .
T Consensus 226 -~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~--~~~~~~~~i~~---~------~~~~~--~ 291 (346)
T 4fih_A 226 -RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE--PPLKAMKMIRD---N------LPPRL--K 291 (346)
T ss_dssp -CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS--CHHHHHHHHHH---S------SCCCC--S
T ss_pred -CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC--CHHHHHHHHHC---C------CCCCC--C
T ss_conf -534656275827999977999996899999999999999787998985--99999999971---7------99988--7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 99899999999984153599889999789999
Q 005599 610 CPAPEALRCIQVGLLCVQDRTTDRPSMSTVVF 641 (688)
Q Consensus 610 ~~~~~~~~l~~l~~~cl~~~p~~RPs~~evl~ 641 (688)
.+...+.++.+|+.+||+.||++|||+.|+++
T Consensus 292 ~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 292 NLHKVSPSLKGFLDRLLVRDPAQRATAAELLK 323 (346)
T ss_dssp CGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf 50229999999999986799568909999960
No 9
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=1.00 E-value=1 Score=371.29 Aligned_cols=249 Identities=25% Similarity=0.305 Sum_probs=207.6
Q ss_pred HCCCCCCCCCCCCCCEEEEEEEE-CCCCEEEEEECCCC---CCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEE
Q ss_conf 23999788103378383999995-79968999980478---920689999999998604799811157899848932699
Q 005599 370 TDNFSTSNKLGQGGFGPVYKGKL-ANGQEIAVKRLSTT---SGQGIEEFKNEVLLIAKLQHRNLVKLLGCCLEKDEKMLI 445 (688)
Q Consensus 370 ~~~f~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 445 (688)
.++|++.+.||+|+||+||+++. .+++.||+|++... .....+.+.+|+.++.+++|||||++++++.+.+..++|
T Consensus 31 ~~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yiv 110 (311)
T 4aw0_A 31 PEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFG 110 (311)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred CCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEE
T ss_conf 52368988983164849999999999989999998888877978999999999999867998989199999738989999
Q ss_pred EECCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCCEECCCCCCEECCC
Q ss_conf 96169999556733038878899888999999999998984408999757557899945877999810013112100279
Q 005599 446 YEFMPNKSLDYFIFDESRKQLLDWKKRFDIILGIARGVLYLHQDSRLRIIHRDLKASNILLDEEMNPRISDFGTARVFGG 525 (688)
Q Consensus 446 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~~~~iiH~Dlkp~Nill~~~~~~kl~Dfgla~~~~~ 525 (688)
|||+++|+|.+++... ..+++.....++.||+.||.|||+++ |+||||||+|||+++++.+||+|||+|+.+..
T Consensus 111 mEy~~gG~L~~~i~~~---~~l~e~~~~~~~~qi~~al~ylH~~~---IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~ 184 (311)
T 4aw0_A 111 LSYAKNGELLKYIRKI---GSFDETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSP 184 (311)
T ss_dssp ECCCTTEEHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred EECCCCCCHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEEECCCCEECCC
T ss_conf 9648998999999874---99999999999999999999999887---82687878996985898889987687502577
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 75311223434557733710113898897465244899999988199999888889831789999982466432113432
Q 005599 526 EEISTNTNRVVGTYGYMSPEYALGGLFSTKSDVFSFGVLLLEIITGKKNTGIFNDDSSNLIRYVWELWSDDKALEIVDSS 605 (688)
Q Consensus 526 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~ 605 (688)
..........+||+.|+|||++.+..|+.++||||+||++|||++|+.||.... ............ ..
T Consensus 185 ~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~-----~~~~~~~i~~~~-------~~ 252 (311)
T 4aw0_A 185 ESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGN-----EGLIFAKIIKLE-------YD 252 (311)
T ss_dssp TTTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSS-----HHHHHHHHHHTC-------CC
T ss_pred CCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC-----HHHHHHHHHCCC-------CC
T ss_conf 877654367556803079989768999968989989999999974989989979-----999999997199-------99
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 46999989999999998415359988999978999
Q 005599 606 MADSCPAPEALRCIQVGLLCVQDRTTDRPSMSTVV 640 (688)
Q Consensus 606 l~~~~~~~~~~~l~~l~~~cl~~~p~~RPs~~evl 640 (688)
.+...+.++.+|+.+||++||++|||+.|++
T Consensus 253 ----~p~~~s~~~~dli~~lL~~dp~~R~t~~e~~ 283 (311)
T 4aw0_A 253 ----FPEKFFPKARDLVEKLLVLDATKRLGCEEME 283 (311)
T ss_dssp ----CCTTCCHHHHHHHHHHSCSSGGGSTTSGGGT
T ss_pred ----CCCCCCHHHHHHHHHHCCCCHHHCCCHHHHC
T ss_conf ----9965699999999997628975780967975
No 10
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=369.33 Aligned_cols=253 Identities=22% Similarity=0.280 Sum_probs=204.8
Q ss_pred HCCCCCCCCCCCCCCEEEEEEEEC-CCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEEC
Q ss_conf 239997881033783839999957-9968999980478920689999999998604799811157899848932699961
Q 005599 370 TDNFSTSNKLGQGGFGPVYKGKLA-NGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLVKLLGCCLEKDEKMLIYEF 448 (688)
Q Consensus 370 ~~~f~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 448 (688)
.+.|++.++||+|+||.||+|+.. +++.||||+++..... .+|+.++..++|||||++++++.+.+..++||||
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~~-----~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy 131 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFR-----VEELVACAGLSSPRIVPLYGAVREGPWVNIFMEL 131 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCC-----THHHHTTTTCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred HHHEEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHHHH-----HHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 33517686851387809999998899989999997888869-----9999999857998999399999989999999966
Q ss_pred CCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCC-CCEECCCCCCEECCCCC
Q ss_conf 69999556733038878899888999999999998984408999757557899945877999-81001311210027975
Q 005599 449 MPNKSLDYFIFDESRKQLLDWKKRFDIILGIARGVLYLHQDSRLRIIHRDLKASNILLDEEM-NPRISDFGTARVFGGEE 527 (688)
Q Consensus 449 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~~~~iiH~Dlkp~Nill~~~~-~~kl~Dfgla~~~~~~~ 527 (688)
+++|+|.+++... ..+++.....++.||+.||.|||+++ |+||||||+||||+.++ .+||+|||+|+.+....
T Consensus 132 ~~gg~L~~~l~~~---~~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~ 205 (336)
T 4g3f_A 132 LEGGSLGQLIKQM---GCLPEDRALYYLGQALEGLEYLHTRR---ILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDG 205 (336)
T ss_dssp CTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCCGGGEEECTTSCCEEECCCTTCEEC----
T ss_pred CCCCCHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHHHCC---CEECCCCHHHEEEECCCCEEEEEECCCCEECCCCC
T ss_conf 5998699999876---99999999999999999999999889---04261677887995899979996278776856787
Q ss_pred CC---CCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 31---122343455773371011389889746524489999998819999988888983178999998246643211343
Q 005599 528 IS---TNTNRVVGTYGYMSPEYALGGLFSTKSDVFSFGVLLLEIITGKKNTGIFNDDSSNLIRYVWELWSDDKALEIVDS 604 (688)
Q Consensus 528 ~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~id~ 604 (688)
.. ......+||+.|||||++.+..|+.++||||+||++|||++|++||..... ..+...+.. ..... .
T Consensus 206 ~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~--~~~~~~i~~---~~~~~----~ 276 (336)
T 4g3f_A 206 LGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFR--GPLCLKIAS---EPPPI----R 276 (336)
T ss_dssp --------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCC--SCCHHHHHH---SCCGG----G
T ss_pred CCCCEECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH--HHHHHHHHC---CCCCC----H
T ss_conf 65402217854558020089998899989089999999999999978699899899--999999980---89980----0
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 246999989999999998415359988999978999982289
Q 005599 605 SMADSCPAPEALRCIQVGLLCVQDRTTDRPSMSTVVFMLSNE 646 (688)
Q Consensus 605 ~l~~~~~~~~~~~l~~l~~~cl~~~p~~RPs~~evl~~L~~~ 646 (688)
..+...+..+.+++.+||++||++|||+.|+++.|...
T Consensus 277 ----~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~ 314 (336)
T 4g3f_A 277 ----EIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKA 314 (336)
T ss_dssp ----GSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred ----HCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHH
T ss_conf ----25866799999999997628976895999999999999
Done!