Your job contains 1 sequence.
>005600
MNISEAPEANGSADVHVDPCVMDPQDIALISNNGPAAVSFSSSPCPDGTETSRNPRIDDT
NSKNAGLEDVASVSAASQSDVSRAESRMRKKQEEQKYQGRIMMQQYPSAQQGFQYQVQGV
QGQAVSLGMNNAHNAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGY
PSQGPVPMPFDATSGSSFNIRTTSVSTGEGIPHIGSTQHQKFYGHQGLMLQSPFVDPLHM
QYFQHPFGDAYNASVQHRLASSGVNGALADPSSKKEPIVAAYMGDQNLQSSLNGGPSISN
PRKVGMPVGGYYGGLPGMGVMGQFPTSPIASPVLPSSPVGSTSQLGLRHEMRLPQGLNRN
TGIYSGWQGQRTFEGQRTFEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRF
IQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQV
LPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEK
IEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNY
VTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQ
SEENDNLLYYKSRLAGSMLICLTSWTEH
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 005600
(688 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2087560 - symbol:PUM5 "pumilio 5" species:3702... 1378 7.0e-141 1
TAIR|locus:2117552 - symbol:PUM6 "pumilio 6" species:3702... 1053 3.3e-117 2
TAIR|locus:2043187 - symbol:PUM2 "pumilio 2" species:3702... 1053 2.4e-112 3
TAIR|locus:2043182 - symbol:PUM1 "pumilio 1" species:3702... 1057 5.6e-109 2
TAIR|locus:2043047 - symbol:PUM3 "pumilio 3" species:3702... 1060 3.5e-107 1
TAIR|locus:2076324 - symbol:PUM4 "pumilio 4" species:3702... 959 1.8e-96 1
UNIPROTKB|B4E2B6 - symbol:PUM2 "Pumilio homolog 2" specie... 876 1.3e-90 2
UNIPROTKB|E2RT57 - symbol:PUM2 "Uncharacterized protein" ... 876 1.3e-90 2
UNIPROTKB|F1SCU6 - symbol:PUM2 "Uncharacterized protein" ... 876 1.3e-90 2
UNIPROTKB|F1N2B8 - symbol:PUM2 "Uncharacterized protein" ... 876 1.3e-90 2
UNIPROTKB|E1BWC0 - symbol:PUM2 "Uncharacterized protein" ... 872 3.4e-90 2
UNIPROTKB|F1NV23 - symbol:PUM2 "Uncharacterized protein" ... 872 3.4e-90 2
UNIPROTKB|Q8TB72 - symbol:PUM2 "Pumilio homolog 2" specie... 865 1.9e-89 2
MGI|MGI:1931751 - symbol:Pum2 "pumilio 2 (Drosophila)" sp... 864 2.4e-89 2
RGD|1311024 - symbol:Pum2 "pumilio homolog 2 (Drosophila)... 863 3.0e-89 2
RGD|1307190 - symbol:Pum1 "pumilio homolog 1 (Drosophila)... 835 4.2e-89 3
DICTYBASE|DDB_G0279735 - symbol:pufA "RNA binding protein... 859 2.1e-88 2
FB|FBgn0003165 - symbol:pum "pumilio" species:7227 "Droso... 845 3.0e-88 3
MGI|MGI:1931749 - symbol:Pum1 "pumilio 1 (Drosophila)" sp... 824 5.9e-87 3
UNIPROTKB|F1STL2 - symbol:PUM1 "Uncharacterized protein" ... 829 9.2e-86 2
UNIPROTKB|B4DG92 - symbol:PUM1 "cDNA FLJ56067, highly sim... 829 9.2e-86 2
UNIPROTKB|E9PR38 - symbol:PUM1 "Pumilio homolog 1" specie... 829 9.2e-86 2
UNIPROTKB|E1BE82 - symbol:PUM1 "Uncharacterized protein" ... 829 3.2e-85 2
UNIPROTKB|Q14671 - symbol:PUM1 "Pumilio homolog 1" specie... 829 3.2e-85 2
UNIPROTKB|H0YDK8 - symbol:PUM1 "Pumilio homolog 1" specie... 818 1.3e-84 2
UNIPROTKB|E7EWT3 - symbol:PUM1 "Pumilio homolog 1" specie... 818 1.3e-84 2
ZFIN|ZDB-GENE-030131-2074 - symbol:pum1 "pumilio homolog ... 827 2.2e-84 2
UNIPROTKB|E9PCJ0 - symbol:PUM1 "Pumilio homolog 1" specie... 818 7.4e-84 2
UNIPROTKB|Q5T1Z4 - symbol:PUM1 "Pumilio homolog 1" specie... 818 7.6e-84 2
UNIPROTKB|Q5T1Z8 - symbol:PUM1 "Pumilio homolog 1 (Drosop... 818 1.6e-83 2
UNIPROTKB|Q2VB19 - symbol:PUM1 "Pumilio homolog 1" specie... 821 3.0e-83 2
UNIPROTKB|F6XHY4 - symbol:PUM1 "Uncharacterized protein" ... 818 4.9e-83 2
UNIPROTKB|H0YEH2 - symbol:PUM1 "Pumilio homolog 1" specie... 829 1.0e-82 1
UNIPROTKB|E2QVA9 - symbol:PUM1 "Uncharacterized protein" ... 818 1.4e-82 2
CGD|CAL0000998 - symbol:PUF3 species:5476 "Candida albica... 716 2.7e-76 3
WB|WBGene00004245 - symbol:puf-9 species:6239 "Caenorhabd... 737 6.7e-75 2
POMBASE|SPAC1687.22c - symbol:puf3 "RNA-binding protein P... 725 1.1e-71 1
SGD|S000003936 - symbol:PUF3 "Protein of the mitochondria... 676 6.8e-71 2
ZFIN|ZDB-GENE-081031-76 - symbol:pum2 "pumilio homolog 2 ... 658 2.9e-68 3
ASPGD|ASPL0000000865 - symbol:AN6587 species:162425 "Emer... 669 4.7e-68 2
WB|WBGene00004244 - symbol:puf-8 species:6239 "Caenorhabd... 562 2.1e-54 1
ASPGD|ASPL0000057098 - symbol:AN10071 species:162425 "Eme... 541 3.5e-52 1
UNIPROTKB|H0YC97 - symbol:PUM1 "Pumilio homolog 1" specie... 540 4.4e-52 1
DICTYBASE|DDB_G0289987 - symbol:DDB_G0289987 "Pumilio hom... 481 9.1e-45 1
POMBASE|SPAC6G9.14 - symbol:SPAC6G9.14 "RNA-binding prote... 457 9.6e-42 1
DICTYBASE|DDB_G0279557 - symbol:DDB_G0279557 "pumilio RNA... 442 1.1e-40 2
TAIR|locus:2015036 - symbol:PUM8 "pumilio 8" species:3702... 428 5.7e-40 1
TAIR|locus:2167111 - symbol:PUM12 "pumilio 12" species:37... 426 1.8e-38 1
TAIR|locus:2194699 - symbol:PUM7 "pumilio 7" species:3702... 420 3.8e-37 1
GENEDB_PFALCIPARUM|PFD0825c - symbol:PFD0825c "RNA-bindin... 401 6.8e-37 1
UNIPROTKB|Q8I1R7 - symbol:PFD0825c "RNA-binding protein o... 401 6.8e-37 1
UNIPROTKB|H0YDC5 - symbol:PUM1 "Pumilio homolog 1" specie... 400 8.7e-37 1
SGD|S000002982 - symbol:PUF4 "Member of the PUF protein f... 415 1.2e-35 2
POMBASE|SPAC4G8.03c - symbol:SPAC4G8.03c "RNA-binding pro... 375 1.4e-31 1
TAIR|locus:2138258 - symbol:PUM11 "pumilio 11" species:37... 366 3.0e-31 1
WB|WBGene00004239 - symbol:puf-3 species:6239 "Caenorhabd... 341 1.1e-28 1
UNIPROTKB|Q9U2G4 - symbol:puf-3 "Protein PUF-3" species:6... 341 1.1e-28 1
TAIR|locus:2011349 - symbol:PUM9 "pumilio 9" species:3702... 344 1.3e-28 1
SGD|S000003146 - symbol:MPT5 "mRNA-binding protein of the... 346 3.1e-28 1
POMBASE|SPCC1682.08c - symbol:SPCC1682.08c "RNA-binding p... 331 8.6e-27 2
WB|WBGene00022257 - symbol:puf-11 species:6239 "Caenorhab... 322 2.3e-26 1
TAIR|locus:2011360 - symbol:PUM10 "pumilio 10" species:37... 322 3.1e-26 1
POMBASE|SPAC4G9.05 - symbol:mpf1 "meiotic PUF family prot... 317 1.8e-25 1
CGD|CAL0000028 - symbol:MPT5 species:5476 "Candida albica... 312 2.1e-24 1
WB|WBGene00004243 - symbol:puf-7 species:6239 "Caenorhabd... 261 1.8e-19 1
WB|WBGene00004242 - symbol:puf-6 species:6239 "Caenorhabd... 260 2.3e-19 1
WB|WBGene00001402 - symbol:fbf-2 species:6239 "Caenorhabd... 239 1.0e-16 1
WB|WBGene00001401 - symbol:fbf-1 species:6239 "Caenorhabd... 230 9.3e-16 1
UNIPROTKB|Q9N5M6 - symbol:fbf-1 "Fem-3 mRNA-binding facto... 230 9.3e-16 1
WB|WBGene00004241 - symbol:puf-5 species:6239 "Caenorhabd... 224 3.4e-15 1
WB|WBGene00004240 - symbol:puf-4 species:6239 "Caenorhabd... 175 7.3e-15 2
CGD|CAL0004399 - symbol:orf19.5381 species:5476 "Candida ... 219 1.3e-13 3
POMBASE|SPBP35G2.14 - symbol:SPBP35G2.14 "RNA-binding pro... 211 1.3e-13 3
POMBASE|SPBC56F2.08c - symbol:SPBC56F2.08c "RNA-binding p... 193 1.2e-11 1
TAIR|locus:2133534 - symbol:PUM15 "pumilio 15" species:37... 186 3.7e-11 1
TAIR|locus:2167771 - symbol:PUM13 "pumilio 13" species:37... 180 2.1e-10 1
ZFIN|ZDB-GENE-030131-9808 - symbol:si:ch211-241o7.5 "si:c... 172 2.0e-09 1
UNIPROTKB|H0YDQ6 - symbol:PUM1 "Pumilio homolog 1" specie... 147 2.6e-09 1
TAIR|locus:2168529 - symbol:PUM16 "pumilio 16" species:37... 165 3.2e-09 1
ASPGD|ASPL0000066087 - symbol:AN7474 species:162425 "Emer... 168 8.7e-09 2
TAIR|locus:2167786 - symbol:PUM14 "pumilio 14" species:37... 168 2.2e-08 3
TAIR|locus:2164165 - symbol:PUM18 "pumilio 18" species:37... 153 6.9e-08 1
SGD|S000003851 - symbol:JSN1 "Member of the Puf family of... 167 1.6e-07 2
CGD|CAL0000283 - symbol:orf19.4262 species:5476 "Candida ... 153 1.7e-07 1
TAIR|locus:2144010 - symbol:PUM19 "pumilio 19" species:37... 141 1.5e-06 1
DICTYBASE|DDB_G0288551 - symbol:DDB_G0288551 "pumilio RNA... 145 2.0e-06 1
SGD|S000006246 - symbol:PUF2 "Member of the PUF protein f... 141 1.0e-05 1
UNIPROTKB|Q15397 - symbol:KIAA0020 "Pumilio domain-contai... 142 1.5e-05 2
UNIPROTKB|G4MRT4 - symbol:MGG_13803 "Uncharacterized prot... 137 1.6e-05 1
ASPGD|ASPL0000058629 - symbol:AN10173 species:162425 "Eme... 136 2.0e-05 1
SGD|S000002904 - symbol:PUF6 "Pumilio-homology domain pro... 135 2.4e-05 1
CGD|CAL0005913 - symbol:orf19.3547 species:5476 "Candida ... 128 0.00014 1
TAIR|locus:2086760 - symbol:PUM24 "pumilio 24" species:37... 131 0.00022 1
RGD|1564753 - symbol:LOC499339 "hypothetical protein LOC4... 126 0.00022 1
UNIPROTKB|E1C1R5 - symbol:KIAA0020 "Uncharacterized prote... 125 0.00028 1
MGI|MGI:106253 - symbol:D19Bwg1357e "DNA segment, Chr 19,... 131 0.00047 2
TAIR|locus:2144711 - symbol:PUM21 "pumilio 21" species:37... 126 0.00054 2
UNIPROTKB|F1SJG9 - symbol:LOC100152831 "Uncharacterized p... 130 0.00075 2
>TAIR|locus:2087560 [details] [associations]
symbol:PUM5 "pumilio 5" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005773 "vacuole" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006487 "protein N-linked glycosylation"
evidence=RCA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005829
GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AP000383 eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460
EMBL:AK228410 EMBL:BX824276 IPI:IPI00527056 IPI:IPI00972845
RefSeq:NP_188660.3 UniGene:At.38266 ProteinModelPortal:Q9LJX4
SMR:Q9LJX4 STRING:Q9LJX4 PaxDb:Q9LJX4 PRIDE:Q9LJX4
EnsemblPlants:AT3G20250.1 GeneID:821569 KEGG:ath:AT3G20250
TAIR:At3g20250 InParanoid:Q9LJX4 OMA:QHKYASN PhylomeDB:Q9LJX4
Genevestigator:Q9LJX4 Uniprot:Q9LJX4
Length = 961
Score = 1378 (490.1 bits), Expect = 7.0e-141, P = 7.0e-141
Identities = 319/640 (49%), Positives = 391/640 (61%)
Query: 49 TETSRNPRIDDTNSKNAGLEXXXXXXXXXXXXXXRAESRMRKKQEEQKYQGRIMMQQYPS 108
+++ N + + N++ A E A SRMR+ QE+Q+ QGR M QY
Sbjct: 274 SQSFTNAQTERLNARQASHEDNNLSVFGASPPSSVA-SRMRRNQEDQQSQGRRMPPQYTP 332
Query: 109 AXXXXXXXXXXXXXXXXSLGMNNAHNAGTYMPSGNPFYPSFQ-PSGAGVYPSQYNVGGYA 167
+ G + + + +G + +FQ P G P + Y
Sbjct: 333 SSYQVQASSPQQMSYPRIGGTQDMMQSLPKIATGE-VHSTFQSPHGLAPPPMYTSTAAYM 391
Query: 168 LN-----------SALFPPFV--AGYP-SQGPVPMPFDATSGSSFNIRTTSVSTGEGIPH 213
+ S +F P GYP + G VP SG + T +
Sbjct: 392 TSLSPFYHQNFQSSGMFVPQYNYGGYPPASGIVPQYM---SGYPSHEATVPMPYDISSTS 448
Query: 214 IGSTQHQKFYGHQGLMLQSP-FVDPLHMQYFQHPFGDAYNASVQHRLASSGVNGALADPS 272
G + G P VDP +QYFQ DAY Q SS D
Sbjct: 449 SGYNNPRLLPGVSSSGQNIPSLVDPFQLQYFQQAQVDAYAPPFQ----SS------TDSF 498
Query: 273 SKKEPIVAAYMGDQN-LQSSLNGGPSISNPRKXXXXXXXXXXXXXXXXXXXQFPTSPIAS 331
+K+ YM + L S L+ G + +PR Q+P SP+AS
Sbjct: 499 GQKDQQAVGYMANHEPLNSPLSPGYGLQSPRHMGNYFAVPPGVRVMP----QYPGSPLAS 554
Query: 332 PVLPSSPVGST-SQLGLRHEMRL-PQGLNRNTGIY-SGWQGQRTFEGQRTFEDSKKHSFL 388
PV+PSSPVG S G R E R QG +RNTGIY GWQG R +D K+HSFL
Sbjct: 555 PVMPSSPVGGMMSHFGRRSETRYHQQGPSRNTGIYPGGWQGNRG-GASSIVDDLKRHSFL 613
Query: 389 EELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLM 448
+ELKS NA+K ELSDIAGR+VEFSVDQHGSRFIQQKLEHCS EEK SVF EVLP ASKLM
Sbjct: 614 DELKSPNARKLELSDIAGRVVEFSVDQHGSRFIQQKLEHCSDEEKASVFSEVLPQASKLM 673
Query: 449 TDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQL 508
TDVFGNYVIQKF EHG+P QR+EL ++L GQ++ LSLQMYGCRVIQKALEVI++ QK++L
Sbjct: 674 TDVFGNYVIQKFIEHGTPAQREELVKQLAGQMVSLSLQMYGCRVIQKALEVIDVDQKTEL 733
Query: 509 VLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRV 568
+ ELDG+V++CVRDQNGNHVIQKCIE +PA +I F+I+AFRGQVATLSTHPYGCRVIQR+
Sbjct: 734 IRELDGNVLKCVRDQNGNHVIQKCIESMPAGRIGFVIAAFRGQVATLSTHPYGCRVIQRI 793
Query: 569 LEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQM 628
LEHCSD+++ CI+DEILESAFALA DQYGNYVTQHVLERGK ER QI+ KL G +VQM
Sbjct: 794 LEHCSDDEETHCIIDEILESAFALAHDQYGNYVTQHVLERGKPDERRQIIEKLTGNVVQM 853
Query: 629 SQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLL 668
SQHKYASNVVEKCLE+ D+ ERE LIEEI+G+SEE+++LL
Sbjct: 854 SQHKYASNVVEKCLEHADSTEREFLIEEIMGKSEEDNHLL 893
Score = 307 (113.1 bits), Expect = 7.8e-24, P = 7.8e-24
Identities = 79/272 (29%), Positives = 140/272 (51%)
Query: 387 FLEELKSSNAQKFEL-SDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHAS 445
F+E + AQ+ EL +AG++V S+ +G R IQ+ LE ++K + +E+ +
Sbjct: 685 FIEH--GTPAQREELVKQLAGQMVSLSLQMYGCRVIQKALEVIDVDQKTELIRELDGNVL 742
Query: 446 KLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQK 505
K + D GN+VIQK E + + GQV LS YGCRVIQ+ LE ++
Sbjct: 743 KCVRDQNGNHVIQKCIESMPAGRIGFVIAAFRGQVATLSTHPYGCRVIQRILEHCSDDEE 802
Query: 506 SQLVL-ELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRV 564
+ ++ E+ DQ GN+V Q +E ++ II G V +S H Y V
Sbjct: 803 THCIIDEILESAFALAHDQYGNYVTQHVLERGKPDERRQIIEKLTGNVVQMSQHKYASNV 862
Query: 565 IQRVLEHCSDEQQGQCIVDEILESA------FALAQDQYGNYVTQHVLERGKSYERTQIL 618
+++ LEH +D + + +++EI+ + A+ +DQ+ NYV Q VLE K +R ++
Sbjct: 863 VEKCLEH-ADSTEREFLIEEIMGKSEEDNHLLAMMKDQFANYVVQKVLEISKDQQREILV 921
Query: 619 SKLAGKIVQMSQHKYASNVVEKCLE-YGDTAE 649
++ + + ++ Y ++V + + +G+ +E
Sbjct: 922 QRMKIHLQSLRKYTYGKHIVARFEQLFGEESE 953
Score = 245 (91.3 bits), Expect = 4.6e-17, P = 4.6e-17
Identities = 77/290 (26%), Positives = 135/290 (46%)
Query: 375 GQRTFEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV 434
G R + +H EE K+S S++ + + D G+ IQ+ +EH + ++
Sbjct: 642 GSRFIQQKLEHCSDEE-KAS-----VFSEVLPQASKLMTDVFGNYVIQKFIEHGTPAQRE 695
Query: 435 SVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQ 494
+ K++ L ++G VIQK E DQ+ EL +L G VL G VIQ
Sbjct: 696 ELVKQLAGQMVSLSLQMYGCRVIQKALEVIDVDQKTELIRELDGNVLKCVRDQNGNHVIQ 755
Query: 495 KALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIE-CVPAEKIEFIISAFRGQVA 553
K +E + + ++ G V G VIQ+ +E C E+ II
Sbjct: 756 KCIESMPAGRIGFVIAAFRGQVATLSTHPYGCRVIQRILEHCSDDEETHCIIDEILESAF 815
Query: 554 TLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYE 613
L+ YG V Q VLE +++ Q I++++ + ++Q +Y + V + LE S E
Sbjct: 816 ALAHDQYGNYVTQHVLERGKPDERRQ-IIEKLTGNVVQMSQHKYASNVVEKCLEHADSTE 874
Query: 614 RTQILSKLAGK------IVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 657
R ++ ++ GK ++ M + ++A+ VV+K LE +RE+L++ +
Sbjct: 875 REFLIEEIMGKSEEDNHLLAMMKDQFANYVVQKVLEISKDQQREILVQRM 924
>TAIR|locus:2117552 [details] [associations]
symbol:PUM6 "pumilio 6" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003729
"mRNA binding" evidence=IDA] [GO:0009165 "nucleotide biosynthetic
process" evidence=RCA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0009507 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161564
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003729 EMBL:AL049480 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000238460 EMBL:AF360298 EMBL:AY133866 EMBL:AK318840
EMBL:AK319148 IPI:IPI00518278 IPI:IPI00520481 IPI:IPI00656838
IPI:IPI00972816 PIR:T04242 RefSeq:NP_001031720.1 RefSeq:NP_567733.1
RefSeq:NP_974618.2 UniGene:At.21892 UniGene:At.28428
ProteinModelPortal:Q9C5E7 SMR:Q9C5E7 STRING:Q9C5E7 PaxDb:Q9C5E7
PRIDE:Q9C5E7 EnsemblPlants:AT4G25880.1 GeneID:828694
KEGG:ath:AT4G25880 TAIR:At4g25880 InParanoid:Q9C5E7 OMA:MEGSFLA
PhylomeDB:Q9C5E7 ProtClustDB:CLSN2689613 Genevestigator:Q9C5E7
Uniprot:Q9C5E7
Length = 861
Score = 1053 (375.7 bits), Expect = 3.3e-117, Sum P(2) = 3.3e-117
Identities = 203/317 (64%), Positives = 250/317 (78%)
Query: 364 YSGWQGQRTFEGQRTFEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQ 423
Y GWQ Q + EG + +FLEELKS ++F+LSDI G IVEFS DQHGSRFIQQ
Sbjct: 496 YPGWQPQGSLEGAN---GPRLCNFLEELKSGKGRRFDLSDITGHIVEFSADQHGSRFIQQ 552
Query: 424 KLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPL 483
KLE+C EEK +VF+E+LPHA KLMTDVFGNYVIQKFFE+G+ QRKELA++L+GQ++PL
Sbjct: 553 KLENCKPEEKAAVFREILPHACKLMTDVFGNYVIQKFFEYGNSTQRKELADQLMGQIVPL 612
Query: 484 SLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEF 543
SLQMYGCRVIQKAL+VIE Q+ +L ELDG VMRCVRDQNGNHVIQKCIE +PA+K+ F
Sbjct: 613 SLQMYGCRVIQKALDVIEPDQRVRLARELDGQVMRCVRDQNGNHVIQKCIENIPADKVGF 672
Query: 544 IISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQ 603
++ AFRGQV++LS HPYGCRVIQR+LE CS + Q + I +EILES L++DQYGNYVTQ
Sbjct: 673 MLYAFRGQVSSLSMHPYGCRVIQRLLERCSHDHQCRFITEEILESVCVLSKDQYGNYVTQ 732
Query: 604 HVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEE 663
HVLE+G S ER +I KL+G IVQ+S HK+ASNV+EKCLEYG ER+L+I+EI G E
Sbjct: 733 HVLEKGTSEERERIGRKLSGHIVQLSLHKFASNVIEKCLEYGGRVERDLIIKEIAGPDES 792
Query: 664 NDNLLYYKSRLAGSMLI 680
++LL G+ ++
Sbjct: 793 YNSLLMMMKDQYGNYVV 809
Score = 289 (106.8 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 81/267 (30%), Positives = 134/267 (50%)
Query: 394 SNAQKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVF 452
++ Q+ EL+D + G+IV S+ +G R IQ+ L+ +++V + +E+ + + D
Sbjct: 594 NSTQRKELADQLMGQIVPLSLQMYGCRVIQKALDVIEPDQRVRLARELDGQVMRCVRDQN 653
Query: 453 GNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIEL-HQKSQLVLE 511
GN+VIQK E+ D+ + GQV LS+ YGCRVIQ+ LE HQ + E
Sbjct: 654 GNHVIQKCIENIPADKVGFMLYAFRGQVSSLSMHPYGCRVIQRLLERCSHDHQCRFITEE 713
Query: 512 LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEH 571
+ V +DQ GN+V Q +E +E+ E I G + LS H + VI++ LE+
Sbjct: 714 ILESVCVLSKDQYGNYVTQHVLEKGTSEERERIGRKLSGHIVQLSLHKFASNVIEKCLEY 773
Query: 572 CSDEQQGQCIV-----DEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIV 626
++ I DE S + +DQYGNYV Q + E + +R + S++
Sbjct: 774 GGRVERDLIIKEIAGPDESYNSLLMMMKDQYGNYVVQKIFETCTADQRLTLFSRVRMHAS 833
Query: 627 QMSQHKYASNVVEKCLEYGDTAERELL 653
+ ++ Y ++V + LE E + L
Sbjct: 834 ALKKYTYGKHIVSR-LEQPSIEENQEL 859
Score = 206 (77.6 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 70/259 (27%), Positives = 118/259 (45%)
Query: 403 DIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFE 462
+I + D G+ IQ+ E+ ++ ++ + +++ L ++G VIQK +
Sbjct: 568 EILPHACKLMTDVFGNYVIQKFFEYGNSTQRKELADQLMGQIVPLSLQMYGCRVIQKALD 627
Query: 463 HGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRD 522
PDQR LA +L GQV+ G VIQK +E I + ++ G V
Sbjct: 628 VIEPDQRVRLARELDGQVMRCVRDQNGNHVIQKCIENIPADKVGFMLYAFRGQVSSLSMH 687
Query: 523 QNGNHVIQKCIE-CVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCI 581
G VIQ+ +E C + FI V LS YG V Q VLE + E++ + I
Sbjct: 688 PYGCRVIQRLLERCSHDHQCRFITEEILESVCVLSKDQYGNYVTQHVLEKGTSEERER-I 746
Query: 582 VDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAG------KIVQMSQHKYAS 635
++ L+ ++ + V + LE G ER I+ ++AG ++ M + +Y +
Sbjct: 747 GRKLSGHIVQLSLHKFASNVIEKCLEYGGRVERDLIIKEIAGPDESYNSLLMMMKDQYGN 806
Query: 636 NVVEKCLEYGDTAERELLI 654
VV+K E TA++ L +
Sbjct: 807 YVVQKIFETC-TADQRLTL 824
Score = 122 (48.0 bits), Expect = 3.3e-117, Sum P(2) = 3.3e-117
Identities = 40/112 (35%), Positives = 51/112 (45%)
Query: 138 YMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPMPFDATSGSS 197
YM S Y P+ VY QY G Y N + P F+ GYPS G VP+
Sbjct: 322 YMTSPAHVYNMQSPA---VYSPQYGYGPYT-N--MIPQFMPGYPSHGSVPV----VVSPD 371
Query: 198 FNIRTTSVSTGEGIPHIGSTQH-QKFYGHQGLMLQSPFVDPLHMQYFQHPFG 248
F + + S G + H G Q+ +K Y G Q F DP++MQY Q FG
Sbjct: 372 FIPQLSGPSAGS-VVHGGEMQYAEKLYVPPG---QPSFPDPMYMQYCQQSFG 419
>TAIR|locus:2043187 [details] [associations]
symbol:PUM2 "pumilio 2" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS;IDA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0003729 "mRNA binding"
evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 GO:GO:0005829 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003730 EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000238460 ProtClustDB:CLSN2717398 InterPro:IPR012940
Pfam:PF07990 EMBL:AY096653 EMBL:AK226635 IPI:IPI00539996 PIR:E84693
RefSeq:NP_001189630.1 RefSeq:NP_180482.1 UniGene:At.28148
UniGene:At.48528 ProteinModelPortal:Q9ZW06 SMR:Q9ZW06 STRING:Q9ZW06
PaxDb:Q9ZW06 PRIDE:Q9ZW06 ProMEX:Q9ZW06 EnsemblPlants:AT2G29190.1
EnsemblPlants:AT2G29190.2 GeneID:817468 KEGG:ath:AT2G29190
TAIR:At2g29190 InParanoid:Q9ZW06 OMA:LAANCED PhylomeDB:Q9ZW06
Genevestigator:Q9ZW06 Uniprot:Q9ZW06
Length = 972
Score = 1053 (375.7 bits), Expect = 2.4e-112, Sum P(3) = 2.4e-112
Identities = 212/346 (61%), Positives = 256/346 (73%)
Query: 324 FPTSPIASPVLPSSPVGSTSQLGLRHE--MRLPQGLNRNTGIYSGWQGQRTFEGQRTFED 381
+P SP+A +LP+S V S + R E MR P G G G ++ + ++
Sbjct: 559 YPGSPLAHHLLPNSLVSPCSPMR-RGEVNMRYPSATRNYAG---GVMG--SWHMDASLDE 612
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S LEE KS+ + FEL++IAG +VEFS DQ+GSRFIQQKLE +++EK V++E++
Sbjct: 613 GFGSSMLEEFKSNKTRGFELAEIAGHVVEFSSDQYGSRFIQQKLETATSDEKNMVYEEIM 672
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
PHA LMTDVFGNYVIQKFFEHG P QR+ELA+KL VLPLSLQMYGCRVIQKA+EV++
Sbjct: 673 PHALALMTDVFGNYVIQKFFEHGLPPQRRELADKLFDNVLPLSLQMYGCRVIQKAIEVVD 732
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 561
L QK ++V ELDGHVMRCVRDQNGNHV+QKCIECVP E IEFIIS F G V TLSTHPYG
Sbjct: 733 LDQKIKMVKELDGHVMRCVRDQNGNHVVQKCIECVPEENIEFIISTFFGNVVTLSTHPYG 792
Query: 562 CRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKL 621
CRVIQRVLEHC D ++DEI+ + LAQDQYGNYV QHVLE GK ERT I+ +L
Sbjct: 793 CRVIQRVLEHCHDPDTQSKVMDEIMSTISMLAQDQYGNYVIQHVLEHGKPDERTVIIKEL 852
Query: 622 AGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNL 667
AGKIVQMSQ K+ASNVVEKCL +G ERE L+ E+LG ++EN+ L
Sbjct: 853 AGKIVQMSQQKFASNVVEKCLTFGGPEEREFLVNEMLGTTDENEPL 898
Score = 288 (106.4 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 74/270 (27%), Positives = 140/270 (51%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
Q+ EL+D + ++ S+ +G R IQ+ +E ++K+ + KE+ H + + D GN+
Sbjct: 699 QRRELADKLFDNVLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKELDGHVMRCVRDQNGNH 758
Query: 456 VIQKFFEHGSPDQRKE-LAEKLVGQVLPLSLQMYGCRVIQKALEVI-ELHQKSQLVLELD 513
V+QK E P++ E + G V+ LS YGCRVIQ+ LE + +S+++ E+
Sbjct: 759 VVQKCIEC-VPEENIEFIISTFFGNVVTLSTHPYGCRVIQRVLEHCHDPDTQSKVMDEIM 817
Query: 514 GHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCS 573
+ +DQ GN+VIQ +E ++ II G++ +S + V+++ L
Sbjct: 818 STISMLAQDQYGNYVIQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLTFGG 877
Query: 574 DEQQGQCIVDEIL------ESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQ 627
E++ + +V+E+L E A+ +DQ+ NYV Q VLE +R IL ++ +
Sbjct: 878 PEER-EFLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILGRIKVHLNA 936
Query: 628 MSQHKYASNVVEKCLEYGDTAERELLIEEI 657
+ ++ Y ++V + + ER + ++ +
Sbjct: 937 LKKYTYGKHIVARVEKLVAAGERRMALQSL 966
Score = 48 (22.0 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 13/66 (19%), Positives = 32/66 (48%)
Query: 348 RHEMRLPQGLNRNTGIYSGWQGQRTFEGQRT-------FEDSKKHSFLEELKSSNAQKFE 400
R ++R+ Q L ++ + G +R ++ F+ K+H F E S+++ +++
Sbjct: 125 REDLRVAQRLKGSSNVLGGVGDRRKVNDSQSLFSMPPGFDQRKQHEFEVEKTSASSSEWD 184
Query: 401 LSDIAG 406
+ + G
Sbjct: 185 ANGLIG 190
Score = 47 (21.6 bits), Expect = 2.4e-112, Sum P(3) = 2.4e-112
Identities = 24/93 (25%), Positives = 38/93 (40%)
Query: 161 YNVGGYALNSALFPPFV--AGYPSQGPVPMPFDATSGSSFNIRTTS------VSTGEGIP 212
Y + Y LN A+ G + PV A S F+ + VS+G+ +
Sbjct: 407 YCLNNYGLNPAVASMMANQLGTNNYSPVYENASAASAMGFSGMDSRLHGGGYVSSGQNLS 466
Query: 213 ---HIGSTQHQKFYGHQGLMLQSPFVDPLHMQY 242
++G ++ G GL QS DP++ QY
Sbjct: 467 ESRNLGRFSNRMMGGGTGL--QSHMADPMYHQY 497
Score = 43 (20.2 bits), Expect = 2.4e-112, Sum P(3) = 2.4e-112
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 30 ISNNG---PAAVSFSSSPC--PDGT-ETSRNPRIDDTNSK--NAGL 67
+S NG P A++ SPC P G+ S N + + +N N GL
Sbjct: 264 LSRNGTPDPQAIARVPSPCLTPIGSGRVSSNDKRNTSNQSPFNGGL 309
Score = 43 (20.2 bits), Expect = 2.8e-111, Sum P(3) = 2.8e-111
Identities = 16/51 (31%), Positives = 21/51 (41%)
Query: 182 SQGPVPMP--FDATSGSSFNIRTTSVSTGE-------GIPHIGSTQHQKFY 223
SQ MP FD F + TS S+ E G+P +G QK +
Sbjct: 153 SQSLFSMPPGFDQRKQHEFEVEKTSASSSEWDANGLIGLPGLGIGGKQKSF 203
Score = 37 (18.1 bits), Expect = 2.8e-111, Sum P(3) = 2.8e-111
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 280 AAYMGDQNLQSSLNGGPSISN 300
A+ MG + S L+GG +S+
Sbjct: 441 ASAMGFSGMDSRLHGGGYVSS 461
>TAIR|locus:2043182 [details] [associations]
symbol:PUM1 "pumilio 1" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003729 EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671
IPI:IPI00536716 PIR:F84693 RefSeq:NP_180483.1 UniGene:At.38509
ProteinModelPortal:Q9ZW07 SMR:Q9ZW07 STRING:Q9ZW07 PaxDb:Q9ZW07
PRIDE:Q9ZW07 EnsemblPlants:AT2G29200.1 GeneID:817469
KEGG:ath:AT2G29200 TAIR:At2g29200 HOGENOM:HOG000238460
InParanoid:Q9ZW07 OMA:DQAHKAT PhylomeDB:Q9ZW07
ProtClustDB:CLSN2717398 Genevestigator:Q9ZW07 InterPro:IPR012940
Pfam:PF07990 Uniprot:Q9ZW07
Length = 968
Score = 1057 (377.1 bits), Expect = 5.6e-109, Sum P(2) = 5.6e-109
Identities = 226/405 (55%), Positives = 273/405 (67%)
Query: 268 LADPSSKKEPIV-AAYMGDQNLQSSLNGGPSISN--PRKXXXXXXXXXXXXXXXXXXXQF 324
L DPS + + ++YM LQ + G P K +
Sbjct: 496 LNDPSMDRNFMGGSSYMDMLELQRAYLGAQKSQYGVPYKSGSPNSHSYYGSPTFGSNMSY 555
Query: 325 PTSPIASPVLPSSPVGSTSQLGLRHE--MRLPQGLNRNTGIYSGWQGQRTFEGQRTFEDS 382
P SP+A +P+S + S + R E MR P RN YSG ++ +F++
Sbjct: 556 PGSPLAHHGMPNSLMSPYSPMR-RDEVNMRFPSA-TRN---YSGGL-MGSWHMDASFDEG 609
Query: 383 KKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLP 442
S LEE KS+ + FELS+IAG +VEFS DQ+GSRFIQQKLE + +EK V++E++P
Sbjct: 610 FGSSMLEEFKSNKTRGFELSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMP 669
Query: 443 HASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIEL 502
A LMTDVFGNYVIQKFFEHG P QR+ELAEKL VLPLSLQMYGCRVIQKA+EV++L
Sbjct: 670 QALVLMTDVFGNYVIQKFFEHGLPPQRRELAEKLFDHVLPLSLQMYGCRVIQKAIEVVDL 729
Query: 503 HQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGC 562
QK ++V ELDGHVMRCVRDQNGNHV+QKCIECVP E IEFIIS F G V TLSTHPYGC
Sbjct: 730 DQKIKMVKELDGHVMRCVRDQNGNHVVQKCIECVPEENIEFIISTFFGHVVTLSTHPYGC 789
Query: 563 RVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLA 622
RVIQRVLEHC D +++EIL + LAQDQYGNYV QHVLE GK ERT I+ +LA
Sbjct: 790 RVIQRVLEHCHDPDTQSKVMEEILSTVSMLAQDQYGNYVVQHVLEHGKPDERTVIIKELA 849
Query: 623 GKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNL 667
GKIVQMSQ K+ASNVVEKCL +G ERELL+ E+LG ++EN+ L
Sbjct: 850 GKIVQMSQQKFASNVVEKCLTFGGPEERELLVNEMLGTTDENEPL 894
Score = 290 (107.1 bits), Expect = 4.5e-21, Sum P(2) = 4.5e-21
Identities = 74/270 (27%), Positives = 141/270 (52%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
Q+ EL++ + ++ S+ +G R IQ+ +E ++K+ + KE+ H + + D GN+
Sbjct: 695 QRRELAEKLFDHVLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKELDGHVMRCVRDQNGNH 754
Query: 456 VIQKFFEHGSPDQRKE-LAEKLVGQVLPLSLQMYGCRVIQKALEVI-ELHQKSQLVLELD 513
V+QK E P++ E + G V+ LS YGCRVIQ+ LE + +S+++ E+
Sbjct: 755 VVQKCIEC-VPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHDPDTQSKVMEEIL 813
Query: 514 GHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCS 573
V +DQ GN+V+Q +E ++ II G++ +S + V+++ L
Sbjct: 814 STVSMLAQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLTFGG 873
Query: 574 DEQQGQCIVDEIL------ESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQ 627
E++ + +V+E+L E A+ +DQ+ NYV Q VLE +R IL+++ +
Sbjct: 874 PEER-ELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILTRIKVHLTA 932
Query: 628 MSQHKYASNVVEKCLEYGDTAERELLIEEI 657
+ ++ Y +VV + + ER + ++ +
Sbjct: 933 LKKYTYGKHVVARIEKLVAAGERRMALQSL 962
Score = 150 (57.9 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
Identities = 115/537 (21%), Positives = 203/537 (37%)
Query: 131 NAHNAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPMPF 190
+A+N G + NP+ P+ Y + YALN A+ + PM +
Sbjct: 382 SAYNGGVGL--ANPYQQLDSPN--------YCLNNYALNPAVASMMANQLGNNNFAPM-Y 430
Query: 191 DATSGSSFNIRTTS------VSTGEGIP---HIGSTQHQKFYGHQGLMLQSPFVDPLHMQ 241
D S F+ + VS+G+ + ++G ++ G GL QS VDP++ Q
Sbjct: 431 DNVSALGFSGMDSRHHGRGFVSSGQNLSESRNLGRFSNRMMGGGAGL--QSHMVDPMYNQ 488
Query: 242 YFQHPFGDAYNASVQHRLASSGVNGALADPSSKKEPIVAAYMGDQNLQSSLNGGPSISNP 301
Y D N R G + D + AY+G Q Q + P
Sbjct: 489 YADSL--DLLNDPSMDRNFMGG--SSYMDMLELQR----AYLGAQKSQYGV--------P 532
Query: 302 RKXXXXXXXXXXXXXXXXXXXQFPTSPIASPVLPSSPVGSTSQLGLRH-EMRLPQGL-NR 359
K +P SP+A +P+S + S + MR P N
Sbjct: 533 YKSGSPNSHSYYGSPTFGSNMSYPGSPLAHHGMPNSLMSPYSPMRRDEVNMRFPSATRNY 592
Query: 360 NTGIYSGWQGQRTF-EG-----QRTFEDSKKHSF-LEELK------SSNA-------QKF 399
+ G+ W +F EG F+ +K F L E+ SS+ QK
Sbjct: 593 SGGLMGSWHMDASFDEGFGSSMLEEFKSNKTRGFELSEIAGHVVEFSSDQYGSRFIQQKL 652
Query: 400 ELS----------DIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMT 449
E + +I + + D G+ IQ+ EH ++ + +++ H L
Sbjct: 653 ETATTDEKNMVYEEIMPQALVLMTDVFGNYVIQKFFEHGLPPQRRELAEKLFDHVLPLSL 712
Query: 450 DVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLV 509
++G VIQK E DQ+ ++ ++L G V+ G V+QK +E + ++
Sbjct: 713 QMYGCRVIQKAIEVVDLDQKIKMVKELDGHVMRCVRDQNGNHVVQKCIECVPEENIEFII 772
Query: 510 LELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVL 569
GHV+ G VIQ+ +E + + ++T+S + V+
Sbjct: 773 STFFGHVVTLSTHPYGCRVIQRVLEHCHDPDTQSKV--MEEILSTVSMLAQD-QYGNYVV 829
Query: 570 EHCSDE---QQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAG 623
+H + + I+ E+ ++Q ++ + V + L G ER +++++ G
Sbjct: 830 QHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLTFGGPEERELLVNEMLG 886
Score = 40 (19.1 bits), Expect = 5.6e-109, Sum P(2) = 5.6e-109
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 30 ISNNG---PAAVSFSSSPCPDGTETSRNPRIDDTNSKN 64
+S NG P A++ SPC + R D N+ N
Sbjct: 256 LSRNGTPDPQAIARVPSPCLTPIGSGRMSSNDKRNTSN 293
>TAIR|locus:2043047 [details] [associations]
symbol:PUM3 "pumilio 3" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005886 GO:GO:0005737
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460
ProtClustDB:CLSN2717398 InterPro:IPR012940 Pfam:PF07990
IPI:IPI00542656 PIR:A84693 RefSeq:NP_180478.1 UniGene:At.46280
ProteinModelPortal:Q9ZW02 SMR:Q9ZW02 PaxDb:Q9ZW02 PRIDE:Q9ZW02
EnsemblPlants:AT2G29140.1 GeneID:817463 KEGG:ath:AT2G29140
TAIR:At2g29140 InParanoid:Q9ZW02 OMA:MYENASA PhylomeDB:Q9ZW02
Genevestigator:Q9ZW02 Uniprot:Q9ZW02
Length = 964
Score = 1060 (378.2 bits), Expect = 3.5e-107, P = 3.5e-107
Identities = 247/528 (46%), Positives = 315/528 (59%)
Query: 152 SGAGVY-PSQYNVGG--YALNSALFPPFVAGYPSQGPVPMPFDATSGSSFNIRTTSVSTG 208
SG+GV P Q++ YALN A+ + PM +A++ ++ + + G
Sbjct: 381 SGSGVANPYQHHDSPNYYALNPAVASMMANQLGTNNYSPMYENASATLGYSAMDSRLHGG 440
Query: 209 EGIPHIGSTQHQKFYGHQG-LMLQ------SPFVDPLHMQYFQHPFGDAYNASVQHRLAS 261
+ + + G G M++ S DP++ QY + F + NA L
Sbjct: 441 SFVSSGQNLSESRNIGRVGNRMMEGGTGHPSHLADPMYHQYAR--FSE--NADSFDLLND 496
Query: 262 SGVNGALADPSSKKEPIVAAYMGDQNLQSSLNGGPSISNPRKXXXXXXXXXXXXXXXXXX 321
++ + I AY+G Q Q L P K
Sbjct: 497 PSMDRNYGNSYMNMLEIQRAYLGSQKSQYGL--------PYKSGSPNSHSYYGSPTFGSN 548
Query: 322 XQFPTSPIASPVLPSSPVGSTSQLGLRHE--MRLPQGLNRNTGIYSGWQGQRTFEGQRTF 379
+P SP+A +P+S + S + R E MR P TG G G ++ +
Sbjct: 549 MSYPGSPLAHHGMPNSLMSPYSPMR-RGEVNMRYPAATRNYTG---GVMG--SWHMDASL 602
Query: 380 EDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKE 439
++ S LEE KS+ + FELS+IAG +VEFS DQ+GSRFIQQKLE + +EK V++E
Sbjct: 603 DEGFGSSMLEEFKSNKTRGFELSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEE 662
Query: 440 VLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEV 499
++P A LMTDVFGNYVIQKFFEHG P QR+EL EKL+ VLPLSLQMYGCRVIQKA+EV
Sbjct: 663 IMPKALALMTDVFGNYVIQKFFEHGLPPQRRELGEKLIDNVLPLSLQMYGCRVIQKAIEV 722
Query: 500 IELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 559
++L QK Q+V ELDGHVMRCVRDQNGNHV+QKCIECVP E IEFIIS F G V TLSTHP
Sbjct: 723 VDLDQKIQMVKELDGHVMRCVRDQNGNHVVQKCIECVPEENIEFIISTFFGHVVTLSTHP 782
Query: 560 YGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILS 619
YGCRVIQRVLEHC + +++EIL + L QDQYGNYV QHVLE GK ERT I+
Sbjct: 783 YGCRVIQRVLEHCHNPDTQSKVMEEILSTVSMLTQDQYGNYVVQHVLEHGKPDERTVIIK 842
Query: 620 KLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNL 667
+LAGKIVQMSQ K+ASNVVEKCL +G ERELL+ E+LG ++EN+ L
Sbjct: 843 ELAGKIVQMSQQKFASNVVEKCLTFGGPEERELLVNEMLGTTDENEPL 890
Score = 287 (106.1 bits), Expect = 1.2e-21, P = 1.2e-21
Identities = 127/545 (23%), Positives = 232/545 (42%)
Query: 148 SFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPMPFD----ATSGSSFNI-RT 202
SF SG + S+ N+G N + G+PS PM + + SF++
Sbjct: 441 SFVSSGQNLSESR-NIGRVG-NRMMEGG--TGHPSHLADPMYHQYARFSENADSFDLLND 496
Query: 203 TSVSTGEGIPHIGSTQHQKFY-GHQGLMLQSPFVD--PLHMQYFQHP-FGDAYNASVQHR 258
S+ G ++ + Q+ Y G Q P+ P Y+ P FG N S
Sbjct: 497 PSMDRNYGNSYMNMLEIQRAYLGSQKSQYGLPYKSGSPNSHSYYGSPTFGS--NMSYPGS 554
Query: 259 -LASSGVNGALADPSS--KKEPIVAAY-----------MGDQNLQSSLNGGPSISNPRKX 304
LA G+ +L P S ++ + Y MG ++ +SL+ G S +
Sbjct: 555 PLAHHGMPNSLMSPYSPMRRGEVNMRYPAATRNYTGGVMGSWHMDASLDEGFGSSMLEEF 614
Query: 305 XXXXXXXXXXXXXXXXXXQFPTSPIASPVLPSS-PVGSTSQLGLRHEMRLPQGLNRNTGI 363
+F + S + +T + + +E +P+ L T +
Sbjct: 615 KSNKTRGFELSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPKALALMTDV 674
Query: 364 YSGWQGQRTFEGQRTFEDSKKHSFLEELKSSNAQKFELSD-IAGRIVEFSVDQHGSRFIQ 422
+ + Q+ FE H Q+ EL + + ++ S+ +G R IQ
Sbjct: 675 FGNYVIQKFFE----------HGL-------PPQRRELGEKLIDNVLPLSLQMYGCRVIQ 717
Query: 423 QKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKE-LAEKLVGQVL 481
+ +E ++K+ + KE+ H + + D GN+V+QK E P++ E + G V+
Sbjct: 718 KAIEVVDLDQKIQMVKELDGHVMRCVRDQNGNHVVQKCIEC-VPEENIEFIISTFFGHVV 776
Query: 482 PLSLQMYGCRVIQKALEVIELHQ---KSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPA 538
LS YGCRVIQ+ LE H +S+++ E+ V +DQ GN+V+Q +E
Sbjct: 777 TLSTHPYGCRVIQRVLE--HCHNPDTQSKVMEEILSTVSMLTQDQYGNYVVQHVLEHGKP 834
Query: 539 EKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEIL------ESAFAL 592
++ II G++ +S + V+++ L E++ + +V+E+L E A+
Sbjct: 835 DERTVIIKELAGKIVQMSQQKFASNVVEKCLTFGGPEER-ELLVNEMLGTTDENEPLQAM 893
Query: 593 AQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAEREL 652
+DQ+ NYV Q VLE +R IL+++ + + ++ Y ++V + + ER +
Sbjct: 894 MKDQFANYVVQKVLETCDDQQRELILTRIKVHLNALKKYTYGKHIVARVEKLVAAGERRM 953
Query: 653 LIEEI 657
++ +
Sbjct: 954 ALQSL 958
Score = 226 (84.6 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 141/690 (20%), Positives = 262/690 (37%)
Query: 7 PEANGSADVHVDPCVMDPQDIALISNNGPAAVSFSSSPCPDGTETSRNPRIDDTNSKNAG 66
P+ G A V PC + P +S+N S + SP +G + N D N+ + G
Sbjct: 258 PDPQGIARVP-SPC-LTPIGSGRVSSNDKRNTS-NQSPF-NGVTSGLNESSDLVNALS-G 312
Query: 67 LEXXXXXXXXXXXXXXRAESRMRKKQEE-QKYQGRIMMQQYPSAXXXXXXXXXXXXXXXX 125
L + ++R Q + +P+
Sbjct: 313 LNLSGTGGLDERGQAEQDVEKVRNYMFGLQDGHNEVNPHGFPNRSDQARGTASCRNSQMR 372
Query: 126 SLGMNNAHNAGT-----YMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGY 180
+A+N+G+ Y +P Y + P+ A + +Q Y+ P +
Sbjct: 373 G-SQGSAYNSGSGVANPYQHHDSPNYYALNPAVASMMANQLGTNNYS------PMYENAS 425
Query: 181 PSQGPVPMPFDATSGSSFNIRTTSVSTGEGIPHIGSTQHQKFYGHQGLMLQSPFVDPLHM 240
+ G M G SF ++S I +G+ + GH S DP++
Sbjct: 426 ATLGYSAMD-SRLHGGSFVSSGQNLSESRNIGRVGNRMMEGGTGHP-----SHLADPMYH 479
Query: 241 QYFQHPFGDAYNASVQHRLASSGVNGALADPSSKKEPIVAAYMGDQNLQSSL---NGGPS 297
QY + F + NA L ++ + I AY+G Q Q L +G P+
Sbjct: 480 QYAR--FSE--NADSFDLLNDPSMDRNYGNSYMNMLEIQRAYLGSQKSQYGLPYKSGSPN 535
Query: 298 ISNPRKXXXXXXXXXXXXXXXXXXXQFPTSPIASPVLPSS--------PVGSTSQLG-LR 348
S+ P S + SP P P + + G +
Sbjct: 536 -SHSYYGSPTFGSNMSYPGSPLAHHGMPNS-LMSPYSPMRRGEVNMRYPAATRNYTGGVM 593
Query: 349 HEMRLPQGLNRNTG--IYSGWQGQRT--FE-----GQRTFEDSKKHS--FLE---ELKSS 394
+ L+ G + ++ +T FE G S ++ F++ E ++
Sbjct: 594 GSWHMDASLDEGFGSSMLEEFKSNKTRGFELSEIAGHVVEFSSDQYGSRFIQQKLETATT 653
Query: 395 NAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGN 454
+ + +I + + D G+ IQ+ EH ++ + ++++ + L ++G
Sbjct: 654 DEKNMVYEEIMPKALALMTDVFGNYVIQKFFEHGLPPQRRELGEKLIDNVLPLSLQMYGC 713
Query: 455 YVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDG 514
VIQK E DQ+ ++ ++L G V+ G V+QK +E + ++ G
Sbjct: 714 RVIQKAIEVVDLDQKIQMVKELDGHVMRCVRDQNGNHVVQKCIECVPEENIEFIISTFFG 773
Query: 515 HVMRCVRDQNGNHVIQKCIE-CVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCS 573
HV+ G VIQ+ +E C + ++ V+ L+ YG V+Q VLEH
Sbjct: 774 HVVTLSTHPYGCRVIQRVLEHCHNPDTQSKVMEEILSTVSMLTQDQYGNYVVQHVLEHGK 833
Query: 574 DEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGK------IVQ 627
+++ I+ E+ ++Q ++ + V + L G ER +++++ G +
Sbjct: 834 PDER-TVIIKELAGKIVQMSQQKFASNVVEKCLTFGGPEERELLVNEMLGTTDENEPLQA 892
Query: 628 MSQHKYASNVVEKCLEYGDTAERELLIEEI 657
M + ++A+ VV+K LE D +REL++ I
Sbjct: 893 MMKDQFANYVVQKVLETCDDQQRELILTRI 922
Score = 219 (82.2 bits), Expect = 3.1e-14, P = 3.1e-14
Identities = 61/239 (25%), Positives = 119/239 (49%)
Query: 397 QKFEL-SDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVS-VFKEVLPHASKLMTDVFGN 454
QK ++ ++ G ++ DQ+G+ +Q+ +E C EE + + H L T +G
Sbjct: 727 QKIQMVKELDGHVMRCVRDQNGNHVVQKCIE-CVPEENIEFIISTFFGHVVTLSTHPYGC 785
Query: 455 YVIQKFFEH-GSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD 513
VIQ+ EH +PD + ++ E+++ V L+ YG V+Q LE + +++ ++ EL
Sbjct: 786 RVIQRVLEHCHNPDTQSKVMEEILSTVSMLTQDQYGNYVVQHVLEHGKPDERTVIIKELA 845
Query: 514 GHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQ------VATLSTHPYGCRVIQR 567
G +++ + + ++V++KC+ E+ E +++ G + + + V+Q+
Sbjct: 846 GKIVQMSQQKFASNVVEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQK 905
Query: 568 VLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIV 626
VLE C D+QQ + I+ I AL + YG ++ V + + ER L L +V
Sbjct: 906 VLETC-DDQQRELILTRIKVHLNALKKYTYGKHIVARVEKLVAAGERRMALQSLPQPLV 963
>TAIR|locus:2076324 [details] [associations]
symbol:PUM4 "pumilio 4" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729 EMBL:AC009400
eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460 InterPro:IPR012940
Pfam:PF07990 EMBL:AK117911 EMBL:BT005311 IPI:IPI00525853
RefSeq:NP_187647.2 UniGene:At.27627 UniGene:At.48643
ProteinModelPortal:Q9SS47 SMR:Q9SS47 PaxDb:Q9SS47 PRIDE:Q9SS47
EnsemblPlants:AT3G10360.1 GeneID:820198 KEGG:ath:AT3G10360
TAIR:At3g10360 InParanoid:Q9SS47 OMA:FKNNKTR PhylomeDB:Q9SS47
Genevestigator:Q9SS47 Uniprot:Q9SS47
Length = 1003
Score = 959 (342.6 bits), Expect = 1.8e-96, P = 1.8e-96
Identities = 186/317 (58%), Positives = 242/317 (76%)
Query: 351 MRLPQGLNRNTGIYSGWQGQRTFEGQRTFEDSKKHSFLEELKSSNAQKFELSDIAGRIVE 410
MR+ Q + + G QG + T E S LE K++ + ELS+I G ++E
Sbjct: 616 MRMSQSASMMKVPFGGLQGSSHVDIGSTAEAS----LLEGFKNNKTRSLELSEIVGHVIE 671
Query: 411 FSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRK 470
FS+DQ+GSRFIQQKLE + EEK ++F E+LP+ LMTDVFGNYVIQKFFEHG+ QRK
Sbjct: 672 FSMDQYGSRFIQQKLETATDEEKNAIFPEILPYGRTLMTDVFGNYVIQKFFEHGTTKQRK 731
Query: 471 ELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQ 530
ELAE++ G VL LSLQMYGCRVIQKALEV+EL Q++++V ELDG VM+CV DQNGNHVIQ
Sbjct: 732 ELAEQVTGHVLALSLQMYGCRVIQKALEVVELEQQARMVKELDGSVMKCVHDQNGNHVIQ 791
Query: 531 KCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAF 590
KCIE +P + I+FIIS+F G+V LSTHPYGCRVIQRVLEH D + + I++EI++S
Sbjct: 792 KCIERLPQDWIQFIISSFYGKVLALSTHPYGCRVIQRVLEHIDDIETQRIIMEEIMDSVC 851
Query: 591 ALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAER 650
LAQDQYGNYV QH+++ GK +ER++I++KLAG+IV+MSQ K+ASNVVEKCL +G ER
Sbjct: 852 TLAQDQYGNYVIQHIIQHGKPHERSEIINKLAGQIVKMSQQKFASNVVEKCLTFGGPEER 911
Query: 651 ELLIEEILGQSEENDNL 667
++L+ E+LG ++EN+ L
Sbjct: 912 QVLVNEMLGYTDENEPL 928
Score = 308 (113.5 bits), Expect = 6.6e-24, P = 6.6e-24
Identities = 84/266 (31%), Positives = 140/266 (52%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
Q+ EL++ + G ++ S+ +G R IQ+ LE E++ + KE+ K + D GN+
Sbjct: 729 QRKELAEQVTGHVLALSLQMYGCRVIQKALEVVELEQQARMVKELDGSVMKCVHDQNGNH 788
Query: 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE--LD 513
VIQK E D + + G+VL LS YGCRVIQ+ LE I+ + ++++E +D
Sbjct: 789 VIQKCIERLPQDWIQFIISSFYGKVLALSTHPYGCRVIQRVLEHIDDIETQRIIMEEIMD 848
Query: 514 GHVMRCVRDQNGNHVIQKCIEC-VPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHC 572
V +DQ GN+VIQ I+ P E+ E II+ GQ+ +S + V+++ L
Sbjct: 849 S-VCTLAQDQYGNYVIQHIIQHGKPHERSE-IINKLAGQIVKMSQQKFASNVVEKCLTFG 906
Query: 573 SDEQQGQCIVDEIL------ESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIV 626
E++ Q +V+E+L E A+ +D +GNYV Q VLE ILS++ +
Sbjct: 907 GPEER-QVLVNEMLGYTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLALILSRIKVHLN 965
Query: 627 QMSQHKYASNVVEKCLEYGDTAEREL 652
+ ++ Y ++V + + T ER +
Sbjct: 966 ALKRYTYGKHIVARVEKLITTGERRI 991
Score = 198 (74.8 bits), Expect = 6.3e-12, P = 6.3e-12
Identities = 96/451 (21%), Positives = 180/451 (39%)
Query: 230 LQSPFVDPLHMQYFQHPFGDAYNASVQHRLASSGVNGALADPSSKKEPIVAAYMGDQNLQ 289
L SP +DP + QY A A + H L + + D +++ ++ A Q L
Sbjct: 521 LHSPVMDPHYSQYLHTASSTA--APIDHSLIRNNFGTSNGDTANEYLAMLLA-QNRQQL- 576
Query: 290 SSLNGGPS--ISNPRKXXXXXXXXXXXXXXXXXXXQFPTSPIA-SPVLPSSPVGSTSQLG 346
+LN S +P F ++ S + P G G
Sbjct: 577 GNLNAANSRFFESPSYDLGNMYLGNHLPSPSKNSRNFQNMRMSQSASMMKVPFG-----G 631
Query: 347 LRHEMRLPQGLNRNTGIYSGWQGQRTFEGQRT--------FE-DSKKHSFLEELKSSNAQ 397
L+ + G + G++ +T + + F D F+++ K A
Sbjct: 632 LQGSSHVDIGSTAEASLLEGFKNNKTRSLELSEIVGHVIEFSMDQYGSRFIQQ-KLETAT 690
Query: 398 KFELSDIAGRIVEFS----VDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFG 453
E + I I+ + D G+ IQ+ EH + +++ + ++V H L ++G
Sbjct: 691 DEEKNAIFPEILPYGRTLMTDVFGNYVIQKFFEHGTTKQRKELAEQVTGHVLALSLQMYG 750
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD 513
VIQK E +Q+ + ++L G V+ G VIQK +E + ++
Sbjct: 751 CRVIQKALEVVELEQQARMVKELDGSVMKCVHDQNGNHVIQKCIERLPQDWIQFIISSFY 810
Query: 514 GHVMRCVRDQNGNHVIQKCIECVP-AEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHC 572
G V+ G VIQ+ +E + E I+ V TL+ YG VIQ +++H
Sbjct: 811 GKVLALSTHPYGCRVIQRVLEHIDDIETQRIIMEEIMDSVCTLAQDQYGNYVIQHIIQHG 870
Query: 573 SDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAG------KIV 626
++ + I++++ ++Q ++ + V + L G ER +++++ G +
Sbjct: 871 KPHERSE-IINKLAGQIVKMSQQKFASNVVEKCLTFGGPEERQVLVNEMLGYTDENEPLQ 929
Query: 627 QMSQHKYASNVVEKCLEYGDTAERELLIEEI 657
M + + + VV+K LE D L++ I
Sbjct: 930 AMMKDPFGNYVVQKVLETCDDQSLALILSRI 960
>UNIPROTKB|B4E2B6 [details] [associations]
symbol:PUM2 "Pumilio homolog 2" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP EMBL:AC007041
UniGene:Hs.467824 HGNC:HGNC:14958 ChiTaRS:PUM2 EMBL:AK304198
IPI:IPI01009448 SMR:B4E2B6 STRING:B4E2B6 Ensembl:ENST00000536417
UCSC:uc010yjz.1 Uniprot:B4E2B6
Length = 1008
Score = 876 (313.4 bits), Expect = 1.3e-90, Sum P(2) = 1.3e-90
Identities = 167/288 (57%), Positives = 218/288 (75%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L D+ G IVEFS DQHGSRFIQQKLE + E+ VF E+L
Sbjct: 649 SGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIL 708
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LMTDVFGNYVIQKFFE GS DQ+ LA ++ G VLPL+LQMYGCRVIQKALE I
Sbjct: 709 QAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESIS 768
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 561
Q+S++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 769 SDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYG 828
Query: 562 CRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKL 621
CRVIQR+LEHC+ EQ I++E+ + L QDQYGNYV QHVLE G+ ++++I+S++
Sbjct: 829 CRVIQRILEHCTAEQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEI 887
Query: 622 AGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLY 669
GK++ +SQHK+ASNVVEKC+ + AER LLI+E+ Q++ + LY
Sbjct: 888 RGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALY 935
Score = 344 (126.2 bits), Expect = 8.5e-28, Sum P(2) = 8.5e-28
Identities = 81/256 (31%), Positives = 136/256 (53%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
QK L+ I G ++ ++ +G R IQ+ LE S++++ + KE+ H K + D GN+
Sbjct: 735 QKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNH 794
Query: 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH 515
V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL H
Sbjct: 795 VVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQH 854
Query: 516 VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDE 575
+ V+DQ GN+VIQ +E E I+S RG+V LS H + V+++ + H S
Sbjct: 855 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRA 914
Query: 576 QQGQCIVDEIL------ESA-FALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQM 628
++ ++DE+ SA + + +DQY NYV Q +++ + +R I+ K+ I +
Sbjct: 915 ERA-LLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTL 973
Query: 629 SQHKYASNVVEKCLEY 644
++ Y +++ K +Y
Sbjct: 974 RKYTYGKHILAKLEKY 989
Score = 245 (91.3 bits), Expect = 8.8e-17, Sum P(2) = 8.8e-17
Identities = 74/289 (25%), Positives = 137/289 (47%)
Query: 380 EDSKKHSFLEEL--KSSNAQK-FELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSV 436
+D F+++ +++ A++ ++I + D G+ IQ+ E S ++K+++
Sbjct: 680 QDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLAL 739
Query: 437 FKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKA 496
+ H L ++G VIQK E S DQ+ E+ ++L G VL G V+QK
Sbjct: 740 ATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKC 799
Query: 497 LEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATL 555
+E ++ Q Q +++ G V G VIQ+ +E AE+ I+ L
Sbjct: 800 IECVQ-PQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQL 858
Query: 556 STHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERT 615
YG VIQ VLEH E + + IV EI AL+Q ++ + V + + ER
Sbjct: 859 VQDQYGNYVIQHVLEHGRPEDKSK-IVSEIRGKVLALSQHKFASNVVEKCVTHASRAERA 917
Query: 616 QILSKLA-------GKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 657
++ ++ + M + +YA+ VV+K ++ + A+R++++ +I
Sbjct: 918 LLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKI 966
Score = 47 (21.6 bits), Expect = 1.3e-90, Sum P(2) = 1.3e-90
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 134 NAGTYMPSGNPFYPSF----QPSGAGV-YPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
++ + P G PFY S PS G+ PSQ G++L PP ++ + S + +
Sbjct: 542 SSSSLAPIGQPFYNSLGFSSSPSPIGMPLPSQ--TPGHSLTP---PPSLSSHGSSSSLHL 596
Query: 189 PFDATSGS 196
T+GS
Sbjct: 597 G-GLTNGS 603
Score = 47 (21.6 bits), Expect = 1.3e-90, Sum P(2) = 1.3e-90
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 139 MPSGNPFYPSFQPSGAGVYPSQYNVGGYALN-SALFPPFVAGYPSQGPVPMPFDATSGSS 197
+ + + Y S A + YN G++ + S + P + P P P ++ GSS
Sbjct: 532 LSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPSPIGMPLPSQTPGHSLTPPPSLSSHGSS 591
Query: 198 FNIRTTSVSTGEG 210
++ ++ G G
Sbjct: 592 SSLHLGGLTNGSG 604
Score = 46 (21.3 bits), Expect = 1.7e-90, Sum P(2) = 1.7e-90
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 230 LQSPFVDPLHMQYFQHPFGDAYNASV-QHRLASSGVNGALADPSSKKEP 277
L P V P QY+ P+G Y A++ Q + A++ N A +S+ +P
Sbjct: 279 LAGPAVVP--PQYYGVPWG-VYPANLFQQQAAAAANNTASQQAASQAQP 324
>UNIPROTKB|E2RT57 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 CTD:23369 OMA:LFDYSSQ
EMBL:AAEX03010760 RefSeq:XP_849088.1 Ensembl:ENSCAFT00000006180
GeneID:607618 KEGG:cfa:607618 Uniprot:E2RT57
Length = 1063
Score = 876 (313.4 bits), Expect = 1.3e-90, Sum P(2) = 1.3e-90
Identities = 167/288 (57%), Positives = 218/288 (75%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L D+ G IVEFS DQHGSRFIQQKLE + E+ VF E+L
Sbjct: 704 SGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIL 763
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LMTDVFGNYVIQKFFE GS DQ+ LA ++ G VLPL+LQMYGCRVIQKALE I
Sbjct: 764 QAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESIS 823
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 561
Q+S++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 824 SDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYG 883
Query: 562 CRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKL 621
CRVIQR+LEHC+ EQ I++E+ + L QDQYGNYV QHVLE G+ ++++I+S++
Sbjct: 884 CRVIQRILEHCTAEQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEI 942
Query: 622 AGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLY 669
GK++ +SQHK+ASNVVEKC+ + AER LLI+E+ Q++ + LY
Sbjct: 943 RGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALY 990
Score = 344 (126.2 bits), Expect = 1.0e-27, Sum P(2) = 1.0e-27
Identities = 81/256 (31%), Positives = 136/256 (53%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
QK L+ I G ++ ++ +G R IQ+ LE S++++ + KE+ H K + D GN+
Sbjct: 790 QKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNH 849
Query: 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH 515
V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL H
Sbjct: 850 VVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQH 909
Query: 516 VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDE 575
+ V+DQ GN+VIQ +E E I+S RG+V LS H + V+++ + H S
Sbjct: 910 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRA 969
Query: 576 QQGQCIVDEIL------ESA-FALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQM 628
++ ++DE+ SA + + +DQY NYV Q +++ + +R I+ K+ I +
Sbjct: 970 ERA-LLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTL 1028
Query: 629 SQHKYASNVVEKCLEY 644
++ Y +++ K +Y
Sbjct: 1029 RKYTYGKHILAKLEKY 1044
Score = 245 (91.3 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 74/289 (25%), Positives = 137/289 (47%)
Query: 380 EDSKKHSFLEEL--KSSNAQK-FELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSV 436
+D F+++ +++ A++ ++I + D G+ IQ+ E S ++K+++
Sbjct: 735 QDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLAL 794
Query: 437 FKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKA 496
+ H L ++G VIQK E S DQ+ E+ ++L G VL G V+QK
Sbjct: 795 ATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKC 854
Query: 497 LEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATL 555
+E ++ Q Q +++ G V G VIQ+ +E AE+ I+ L
Sbjct: 855 IECVQ-PQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQL 913
Query: 556 STHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERT 615
YG VIQ VLEH E + + IV EI AL+Q ++ + V + + ER
Sbjct: 914 VQDQYGNYVIQHVLEHGRPEDKSK-IVSEIRGKVLALSQHKFASNVVEKCVTHASRAERA 972
Query: 616 QILSKLA-------GKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 657
++ ++ + M + +YA+ VV+K ++ + A+R++++ +I
Sbjct: 973 LLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKI 1021
Score = 47 (21.6 bits), Expect = 1.3e-90, Sum P(2) = 1.3e-90
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 134 NAGTYMPSGNPFYPSF----QPSGAGV-YPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
++ + P G PFY S PS G+ PSQ G++L PP ++ + S + +
Sbjct: 597 SSSSLAPIGQPFYNSLGFSSSPSPIGMPLPSQ--TPGHSLTP---PPSLSSHGSSSSLHL 651
Query: 189 PFDATSGS 196
T+GS
Sbjct: 652 G-GLTNGS 658
Score = 47 (21.6 bits), Expect = 1.3e-90, Sum P(2) = 1.3e-90
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 139 MPSGNPFYPSFQPSGAGVYPSQYNVGGYALN-SALFPPFVAGYPSQGPVPMPFDATSGSS 197
+ + + Y S A + YN G++ + S + P + P P P ++ GSS
Sbjct: 587 LSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPSPIGMPLPSQTPGHSLTPPPSLSSHGSS 646
Query: 198 FNIRTTSVSTGEG 210
++ ++ G G
Sbjct: 647 SSLHLGGLTNGSG 659
Score = 45 (20.9 bits), Expect = 2.1e-90, Sum P(2) = 2.1e-90
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 230 LQSPFVDPLHMQYFQHPFGDAYNASV-QHRLASSGVNGALADPSSKKEP 277
L P V P QY+ P+G Y A++ Q + A++ N A +S+ +P
Sbjct: 335 LAGPAVVP--PQYYGVPWG-VYPANLFQQQAAAAANNTANQQAASQAQP 380
>UNIPROTKB|F1SCU6 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 OMA:LFDYSSQ EMBL:AEMK01186664
EMBL:CU466989 Ensembl:ENSSSCT00000009411 Uniprot:F1SCU6
Length = 1064
Score = 876 (313.4 bits), Expect = 1.3e-90, Sum P(2) = 1.3e-90
Identities = 167/288 (57%), Positives = 218/288 (75%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L D+ G IVEFS DQHGSRFIQQKLE + E+ VF E+L
Sbjct: 705 SGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIL 764
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LMTDVFGNYVIQKFFE GS DQ+ LA ++ G VLPL+LQMYGCRVIQKALE I
Sbjct: 765 QAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESIS 824
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 561
Q+S++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 825 SDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYG 884
Query: 562 CRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKL 621
CRVIQR+LEHC+ EQ I++E+ + L QDQYGNYV QHVLE G+ ++++I+S++
Sbjct: 885 CRVIQRILEHCTAEQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEI 943
Query: 622 AGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLY 669
GK++ +SQHK+ASNVVEKC+ + AER LLI+E+ Q++ + LY
Sbjct: 944 RGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALY 991
Score = 344 (126.2 bits), Expect = 1.0e-27, Sum P(2) = 1.0e-27
Identities = 81/256 (31%), Positives = 136/256 (53%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
QK L+ I G ++ ++ +G R IQ+ LE S++++ + KE+ H K + D GN+
Sbjct: 791 QKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNH 850
Query: 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH 515
V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL H
Sbjct: 851 VVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQH 910
Query: 516 VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDE 575
+ V+DQ GN+VIQ +E E I+S RG+V LS H + V+++ + H S
Sbjct: 911 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRA 970
Query: 576 QQGQCIVDEIL------ESA-FALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQM 628
++ ++DE+ SA + + +DQY NYV Q +++ + +R I+ K+ I +
Sbjct: 971 ERA-LLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTL 1029
Query: 629 SQHKYASNVVEKCLEY 644
++ Y +++ K +Y
Sbjct: 1030 RKYTYGKHILAKLEKY 1045
Score = 245 (91.3 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 74/289 (25%), Positives = 137/289 (47%)
Query: 380 EDSKKHSFLEEL--KSSNAQK-FELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSV 436
+D F+++ +++ A++ ++I + D G+ IQ+ E S ++K+++
Sbjct: 736 QDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLAL 795
Query: 437 FKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKA 496
+ H L ++G VIQK E S DQ+ E+ ++L G VL G V+QK
Sbjct: 796 ATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKC 855
Query: 497 LEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATL 555
+E ++ Q Q +++ G V G VIQ+ +E AE+ I+ L
Sbjct: 856 IECVQ-PQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQL 914
Query: 556 STHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERT 615
YG VIQ VLEH E + + IV EI AL+Q ++ + V + + ER
Sbjct: 915 VQDQYGNYVIQHVLEHGRPEDKSK-IVSEIRGKVLALSQHKFASNVVEKCVTHASRAERA 973
Query: 616 QILSKLA-------GKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 657
++ ++ + M + +YA+ VV+K ++ + A+R++++ +I
Sbjct: 974 LLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKI 1022
Score = 47 (21.6 bits), Expect = 1.3e-90, Sum P(2) = 1.3e-90
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 134 NAGTYMPSGNPFYPSF----QPSGAGV-YPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
++ + P G PFY S PS G+ PSQ G++L PP ++ + S + +
Sbjct: 598 SSSSLAPIGQPFYNSLGFSSSPSPIGMPLPSQ--TPGHSLTP---PPSLSSHGSSSSLHL 652
Query: 189 PFDATSGS 196
T+GS
Sbjct: 653 G-GLTNGS 659
Score = 47 (21.6 bits), Expect = 1.3e-90, Sum P(2) = 1.3e-90
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 139 MPSGNPFYPSFQPSGAGVYPSQYNVGGYALN-SALFPPFVAGYPSQGPVPMPFDATSGSS 197
+ + + Y S A + YN G++ + S + P + P P P ++ GSS
Sbjct: 588 LSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPSPIGMPLPSQTPGHSLTPPPSLSSHGSS 647
Query: 198 FNIRTTSVSTGEG 210
++ ++ G G
Sbjct: 648 SSLHLGGLTNGSG 660
Score = 45 (20.9 bits), Expect = 2.1e-90, Sum P(2) = 2.1e-90
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 230 LQSPFVDPLHMQYFQHPFGDAYNASV-QHRLASSGVNGALADPSSKKEP 277
L P V P QY+ P+G Y A++ Q + A++ N A +S+ +P
Sbjct: 339 LAGPAVVP--PQYYGVPWG-VYPANLFQQQAAAAANNTANQQAASQAQP 384
>UNIPROTKB|F1N2B8 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 OMA:LFDYSSQ EMBL:DAAA02031737
IPI:IPI00703675 Ensembl:ENSBTAT00000014813 Uniprot:F1N2B8
Length = 1069
Score = 876 (313.4 bits), Expect = 1.3e-90, Sum P(2) = 1.3e-90
Identities = 167/288 (57%), Positives = 218/288 (75%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L D+ G IVEFS DQHGSRFIQQKLE + E+ VF E+L
Sbjct: 710 SGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIL 769
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LMTDVFGNYVIQKFFE GS DQ+ LA ++ G VLPL+LQMYGCRVIQKALE I
Sbjct: 770 QAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESIS 829
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 561
Q+S++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 830 SDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYG 889
Query: 562 CRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKL 621
CRVIQR+LEHC+ EQ I++E+ + L QDQYGNYV QHVLE G+ ++++I+S++
Sbjct: 890 CRVIQRILEHCTAEQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEI 948
Query: 622 AGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLY 669
GK++ +SQHK+ASNVVEKC+ + AER LLI+E+ Q++ + LY
Sbjct: 949 RGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALY 996
Score = 342 (125.4 bits), Expect = 1.8e-27, Sum P(2) = 1.8e-27
Identities = 81/256 (31%), Positives = 136/256 (53%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
QK L+ I G ++ ++ +G R IQ+ LE S++++ + KE+ H K + D GN+
Sbjct: 796 QKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNH 855
Query: 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH 515
V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL H
Sbjct: 856 VVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQH 915
Query: 516 VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDE 575
+ V+DQ GN+VIQ +E E I+S RG+V LS H + V+++ + H S
Sbjct: 916 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRA 975
Query: 576 QQGQCIVDEIL------ESA-FALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQM 628
++ ++DE+ SA + + +DQY NYV Q +++ + +R I+ K+ I +
Sbjct: 976 ERA-LLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHISTL 1034
Query: 629 SQHKYASNVVEKCLEY 644
++ Y +++ K +Y
Sbjct: 1035 RKYTYGKHILAKLEKY 1050
Score = 245 (91.3 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 74/289 (25%), Positives = 137/289 (47%)
Query: 380 EDSKKHSFLEEL--KSSNAQK-FELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSV 436
+D F+++ +++ A++ ++I + D G+ IQ+ E S ++K+++
Sbjct: 741 QDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLAL 800
Query: 437 FKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKA 496
+ H L ++G VIQK E S DQ+ E+ ++L G VL G V+QK
Sbjct: 801 ATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKC 860
Query: 497 LEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATL 555
+E ++ Q Q +++ G V G VIQ+ +E AE+ I+ L
Sbjct: 861 IECVQ-PQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQL 919
Query: 556 STHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERT 615
YG VIQ VLEH E + + IV EI AL+Q ++ + V + + ER
Sbjct: 920 VQDQYGNYVIQHVLEHGRPEDKSK-IVSEIRGKVLALSQHKFASNVVEKCVTHASRAERA 978
Query: 616 QILSKLA-------GKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 657
++ ++ + M + +YA+ VV+K ++ + A+R++++ +I
Sbjct: 979 LLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKI 1027
Score = 47 (21.6 bits), Expect = 1.3e-90, Sum P(2) = 1.3e-90
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 134 NAGTYMPSGNPFYPSF----QPSGAGV-YPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
++ + P G PFY S PS G+ PSQ G++L PP ++ + S + +
Sbjct: 603 SSSSLAPIGQPFYNSLGFSSSPSPIGMPLPSQ--TPGHSLTP---PPSLSSHGSSSSLHL 657
Query: 189 PFDATSGS 196
T+GS
Sbjct: 658 G-GLTNGS 664
Score = 47 (21.6 bits), Expect = 1.3e-90, Sum P(2) = 1.3e-90
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 139 MPSGNPFYPSFQPSGAGVYPSQYNVGGYALN-SALFPPFVAGYPSQGPVPMPFDATSGSS 197
+ + + Y S A + YN G++ + S + P + P P P ++ GSS
Sbjct: 593 LSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPSPIGMPLPSQTPGHSLTPPPSLSSHGSS 652
Query: 198 FNIRTTSVSTGEG 210
++ ++ G G
Sbjct: 653 SSLHLGGLTNGSG 665
Score = 45 (20.9 bits), Expect = 2.1e-90, Sum P(2) = 2.1e-90
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 230 LQSPFVDPLHMQYFQHPFGDAYNASV-QHRLASSGVNGALADPSSKKEP 277
L P V P QY+ P+G Y A++ Q + A++ N A +S+ +P
Sbjct: 341 LAGPAVVP--PQYYGVPWG-VYPANLFQQQAAAAANNTANQQAASQAQP 386
>UNIPROTKB|E1BWC0 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0034063 "stress
granule assembly" evidence=IEA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 OMA:LFDYSSQ EMBL:AADN02018552
EMBL:AADN02018553 EMBL:AADN02018554 EMBL:AADN02018555
IPI:IPI00682927 Ensembl:ENSGALT00000026591 Uniprot:E1BWC0
Length = 1062
Score = 872 (312.0 bits), Expect = 3.4e-90, Sum P(2) = 3.4e-90
Identities = 166/288 (57%), Positives = 218/288 (75%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L D+ G IVEFS DQHGSRFIQQKLE + E+ VF E+L
Sbjct: 703 SGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIL 762
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LMTDVFGNYVIQKFFE GS DQ+ LA ++ G VLPL+LQMYGCRVIQKALE I
Sbjct: 763 QAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESIS 822
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 561
Q++++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 823 PDQQNEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYG 882
Query: 562 CRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKL 621
CRVIQR+LEHC+ EQ I++E+ + L QDQYGNYV QHVLE G+ ++++I+S++
Sbjct: 883 CRVIQRILEHCTAEQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEI 941
Query: 622 AGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLY 669
GK++ +SQHK+ASNVVEKC+ + AER LLI+E+ Q++ + LY
Sbjct: 942 RGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALY 989
Score = 341 (125.1 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
Identities = 81/256 (31%), Positives = 135/256 (52%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
QK L+ I G ++ ++ +G R IQ+ LE S +++ + KE+ H K + D GN+
Sbjct: 789 QKLALATRIRGHVLPLALQMYGCRVIQKALESISPDQQNEMVKELDGHVLKCVKDQNGNH 848
Query: 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH 515
V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL H
Sbjct: 849 VVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQH 908
Query: 516 VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDE 575
+ V+DQ GN+VIQ +E E I+S RG+V LS H + V+++ + H S
Sbjct: 909 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRA 968
Query: 576 QQGQCIVDEIL------ESA-FALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQM 628
++ ++DE+ SA + + +DQY NYV Q +++ + +R I+ K+ I +
Sbjct: 969 ERA-LLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTL 1027
Query: 629 SQHKYASNVVEKCLEY 644
++ Y +++ K +Y
Sbjct: 1028 RKYTYGKHILAKLEKY 1043
Score = 253 (94.1 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 75/289 (25%), Positives = 138/289 (47%)
Query: 380 EDSKKHSFLEEL--KSSNAQK-FELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSV 436
+D F+++ +++ A++ ++I + D G+ IQ+ E S ++K+++
Sbjct: 734 QDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLAL 793
Query: 437 FKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKA 496
+ H L ++G VIQK E SPDQ+ E+ ++L G VL G V+QK
Sbjct: 794 ATRIRGHVLPLALQMYGCRVIQKALESISPDQQNEMVKELDGHVLKCVKDQNGNHVVQKC 853
Query: 497 LEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATL 555
+E ++ Q Q +++ G V G VIQ+ +E AE+ I+ L
Sbjct: 854 IECVQ-PQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQL 912
Query: 556 STHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERT 615
YG VIQ VLEH E + + IV EI AL+Q ++ + V + + ER
Sbjct: 913 VQDQYGNYVIQHVLEHGRPEDKSK-IVSEIRGKVLALSQHKFASNVVEKCVTHASRAERA 971
Query: 616 QILSKLA-------GKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 657
++ ++ + M + +YA+ VV+K ++ + A+R++++ +I
Sbjct: 972 LLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKI 1020
Score = 239 (89.2 bits), Expect = 2.4e-16, P = 2.4e-16
Identities = 90/344 (26%), Positives = 146/344 (42%)
Query: 327 SPIASPVLPS-------SPVGSTSQLGLRHEMRLPQGLNRNTGIY-SGWQGQRTFEGQRT 378
SPI P LPS +P S S G + L GL +G Y S G + +
Sbjct: 618 SPIGMP-LPSQTPGHSLTPPPSLSSHGSSSSLHLG-GLTNGSGRYISAAPGAEA-KYRSA 674
Query: 379 FEDSKKHSFLEELKSSNAQKFELSDI--AGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSV 436
S S +L + ++ SDI +GR D +RF +L
Sbjct: 675 ASTSSLFSSTSQLFPPSRLRYSRSDIMPSGRS-RLLEDFRNNRFPNLQL----------- 722
Query: 437 FKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKA 496
++++ H + D G+ IQ+ E +P +R+ + +++ L ++G VIQK
Sbjct: 723 -RDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKF 781
Query: 497 LEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLS 556
E L QK L + GHV+ G VIQK +E + ++ ++ G V
Sbjct: 782 FEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISPDQQNEMVKELDGHVLKCV 841
Query: 557 THPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQ 616
G V+Q+ +E C Q Q I+D F L+ YG V Q +LE + +
Sbjct: 842 KDQNGNHVVQKCIE-CVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLP 900
Query: 617 ILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQ 660
IL +L Q+ Q +Y + V++ LE+G ++ ++ EI G+
Sbjct: 901 ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGK 944
Score = 47 (21.6 bits), Expect = 3.4e-90, Sum P(2) = 3.4e-90
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 134 NAGTYMPSGNPFYPSF----QPSGAGV-YPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
++ + P G PFY S PS G+ PSQ G++L PP ++ + S + +
Sbjct: 596 SSSSLAPIGQPFYNSLGFSSSPSPIGMPLPSQ--TPGHSLTP---PPSLSSHGSSSSLHL 650
Query: 189 PFDATSGS 196
T+GS
Sbjct: 651 G-GLTNGS 657
Score = 47 (21.6 bits), Expect = 3.4e-90, Sum P(2) = 3.4e-90
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 139 MPSGNPFYPSFQPSGAGVYPSQYNVGGYALN-SALFPPFVAGYPSQGPVPMPFDATSGSS 197
+ + + Y S A + YN G++ + S + P + P P P ++ GSS
Sbjct: 586 LSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPSPIGMPLPSQTPGHSLTPPPSLSSHGSS 645
Query: 198 FNIRTTSVSTGEG 210
++ ++ G G
Sbjct: 646 SSLHLGGLTNGSG 658
>UNIPROTKB|F1NV23 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 EMBL:AADN02018552
EMBL:AADN02018553 EMBL:AADN02018554 EMBL:AADN02018555
IPI:IPI00735100 Ensembl:ENSGALT00000026590 Uniprot:F1NV23
Length = 1061
Score = 872 (312.0 bits), Expect = 3.4e-90, Sum P(2) = 3.4e-90
Identities = 166/288 (57%), Positives = 218/288 (75%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L D+ G IVEFS DQHGSRFIQQKLE + E+ VF E+L
Sbjct: 702 SGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIL 761
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LMTDVFGNYVIQKFFE GS DQ+ LA ++ G VLPL+LQMYGCRVIQKALE I
Sbjct: 762 QAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESIS 821
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 561
Q++++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 822 PDQQNEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYG 881
Query: 562 CRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKL 621
CRVIQR+LEHC+ EQ I++E+ + L QDQYGNYV QHVLE G+ ++++I+S++
Sbjct: 882 CRVIQRILEHCTAEQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEI 940
Query: 622 AGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLY 669
GK++ +SQHK+ASNVVEKC+ + AER LLI+E+ Q++ + LY
Sbjct: 941 RGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALY 988
Score = 341 (125.1 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
Identities = 81/256 (31%), Positives = 135/256 (52%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
QK L+ I G ++ ++ +G R IQ+ LE S +++ + KE+ H K + D GN+
Sbjct: 788 QKLALATRIRGHVLPLALQMYGCRVIQKALESISPDQQNEMVKELDGHVLKCVKDQNGNH 847
Query: 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH 515
V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL H
Sbjct: 848 VVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQH 907
Query: 516 VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDE 575
+ V+DQ GN+VIQ +E E I+S RG+V LS H + V+++ + H S
Sbjct: 908 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRA 967
Query: 576 QQGQCIVDEIL------ESA-FALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQM 628
++ ++DE+ SA + + +DQY NYV Q +++ + +R I+ K+ I +
Sbjct: 968 ERA-LLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTL 1026
Query: 629 SQHKYASNVVEKCLEY 644
++ Y +++ K +Y
Sbjct: 1027 RKYTYGKHILAKLEKY 1042
Score = 253 (94.1 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 75/289 (25%), Positives = 138/289 (47%)
Query: 380 EDSKKHSFLEEL--KSSNAQK-FELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSV 436
+D F+++ +++ A++ ++I + D G+ IQ+ E S ++K+++
Sbjct: 733 QDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLAL 792
Query: 437 FKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKA 496
+ H L ++G VIQK E SPDQ+ E+ ++L G VL G V+QK
Sbjct: 793 ATRIRGHVLPLALQMYGCRVIQKALESISPDQQNEMVKELDGHVLKCVKDQNGNHVVQKC 852
Query: 497 LEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATL 555
+E ++ Q Q +++ G V G VIQ+ +E AE+ I+ L
Sbjct: 853 IECVQ-PQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQL 911
Query: 556 STHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERT 615
YG VIQ VLEH E + + IV EI AL+Q ++ + V + + ER
Sbjct: 912 VQDQYGNYVIQHVLEHGRPEDKSK-IVSEIRGKVLALSQHKFASNVVEKCVTHASRAERA 970
Query: 616 QILSKLA-------GKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 657
++ ++ + M + +YA+ VV+K ++ + A+R++++ +I
Sbjct: 971 LLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKI 1019
Score = 239 (89.2 bits), Expect = 2.4e-16, P = 2.4e-16
Identities = 90/344 (26%), Positives = 146/344 (42%)
Query: 327 SPIASPVLPS-------SPVGSTSQLGLRHEMRLPQGLNRNTGIY-SGWQGQRTFEGQRT 378
SPI P LPS +P S S G + L GL +G Y S G + +
Sbjct: 617 SPIGMP-LPSQTPGHSLTPPPSLSSHGSSSSLHLG-GLTNGSGRYISAAPGAEA-KYRSA 673
Query: 379 FEDSKKHSFLEELKSSNAQKFELSDI--AGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSV 436
S S +L + ++ SDI +GR D +RF +L
Sbjct: 674 ASTSSLFSSTSQLFPPSRLRYSRSDIMPSGRS-RLLEDFRNNRFPNLQL----------- 721
Query: 437 FKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKA 496
++++ H + D G+ IQ+ E +P +R+ + +++ L ++G VIQK
Sbjct: 722 -RDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKF 780
Query: 497 LEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLS 556
E L QK L + GHV+ G VIQK +E + ++ ++ G V
Sbjct: 781 FEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISPDQQNEMVKELDGHVLKCV 840
Query: 557 THPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQ 616
G V+Q+ +E C Q Q I+D F L+ YG V Q +LE + +
Sbjct: 841 KDQNGNHVVQKCIE-CVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLP 899
Query: 617 ILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQ 660
IL +L Q+ Q +Y + V++ LE+G ++ ++ EI G+
Sbjct: 900 ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGK 943
Score = 47 (21.6 bits), Expect = 3.4e-90, Sum P(2) = 3.4e-90
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 134 NAGTYMPSGNPFYPSF----QPSGAGV-YPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
++ + P G PFY S PS G+ PSQ G++L PP ++ + S + +
Sbjct: 595 SSSSLAPIGQPFYNSLGFSSSPSPIGMPLPSQ--TPGHSLTP---PPSLSSHGSSSSLHL 649
Query: 189 PFDATSGS 196
T+GS
Sbjct: 650 G-GLTNGS 656
Score = 47 (21.6 bits), Expect = 3.4e-90, Sum P(2) = 3.4e-90
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 139 MPSGNPFYPSFQPSGAGVYPSQYNVGGYALN-SALFPPFVAGYPSQGPVPMPFDATSGSS 197
+ + + Y S A + YN G++ + S + P + P P P ++ GSS
Sbjct: 585 LSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPSPIGMPLPSQTPGHSLTPPPSLSSHGSS 644
Query: 198 FNIRTTSVSTGEG 210
++ ++ G G
Sbjct: 645 SSLHLGGLTNGSG 657
>UNIPROTKB|Q8TB72 [details] [associations]
symbol:PUM2 "Pumilio homolog 2" species:9606 "Homo sapiens"
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 EMBL:CH471053 GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 eggNOG:COG5099 HOGENOM:HOG000238461
HOVERGEN:HBG049462 EMBL:AF315591 EMBL:D87078 EMBL:AC007041
EMBL:AK093847 EMBL:BC024218 EMBL:BC112046 EMBL:BC112048
EMBL:AF272350 IPI:IPI00022184 IPI:IPI00398749 IPI:IPI00398750
RefSeq:NP_056132.1 UniGene:Hs.467824 PDB:3Q0Q PDB:3Q0R PDB:3Q0S
PDBsum:3Q0Q PDBsum:3Q0R PDBsum:3Q0S ProteinModelPortal:Q8TB72
SMR:Q8TB72 IntAct:Q8TB72 MINT:MINT-254513 STRING:Q8TB72
PhosphoSite:Q8TB72 DMDM:41688714 PaxDb:Q8TB72 PRIDE:Q8TB72
Ensembl:ENST00000319801 Ensembl:ENST00000338086
Ensembl:ENST00000361078 Ensembl:ENST00000403432
Ensembl:ENST00000440577 GeneID:23369 KEGG:hsa:23369 UCSC:uc002rds.1
CTD:23369 GeneCards:GC02M020448 HGNC:HGNC:14958 HPA:HPA030316
MIM:607205 neXtProt:NX_Q8TB72 PharmGKB:PA34043 InParanoid:Q8TB72
OMA:HITSIPR PhylomeDB:Q8TB72 ChiTaRS:PUM2 EvolutionaryTrace:Q8TB72
GenomeRNAi:23369 NextBio:45440 ArrayExpress:Q8TB72 Bgee:Q8TB72
CleanEx:HS_PUM2 Genevestigator:Q8TB72 GermOnline:ENSG00000055917
Uniprot:Q8TB72
Length = 1066
Score = 865 (309.6 bits), Expect = 1.9e-89, Sum P(2) = 1.9e-89
Identities = 167/290 (57%), Positives = 218/290 (75%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L D+ G IVEFS DQHGSRFIQQKLE + E+ VF E+L
Sbjct: 705 SGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIL 764
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LMTDVFGNYVIQKFFE GS DQ+ LA ++ G VLPL+LQMYGCRVIQKALE I
Sbjct: 765 QAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESIS 824
Query: 502 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 559
Q+ S++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 825 SDQQVISEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHP 884
Query: 560 YGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILS 619
YGCRVIQR+LEHC+ EQ I++E+ + L QDQYGNYV QHVLE G+ ++++I+S
Sbjct: 885 YGCRVIQRILEHCTAEQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVS 943
Query: 620 KLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLY 669
++ GK++ +SQHK+ASNVVEKC+ + AER LLI+E+ Q++ + LY
Sbjct: 944 EIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALY 993
Score = 339 (124.4 bits), Expect = 3.8e-27, Sum P(2) = 3.8e-27
Identities = 82/258 (31%), Positives = 137/258 (53%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV--SVFKEVLPHASKLMTDVFG 453
QK L+ I G ++ ++ +G R IQ+ LE S++++V + KE+ H K + D G
Sbjct: 791 QKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISEMVKELDGHVLKCVKDQNG 850
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD 513
N+V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL
Sbjct: 851 NHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELH 910
Query: 514 GHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCS 573
H + V+DQ GN+VIQ +E E I+S RG+V LS H + V+++ + H S
Sbjct: 911 QHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHAS 970
Query: 574 DEQQGQCIVDEIL------ESA-FALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIV 626
++ ++DE+ SA + + +DQY NYV Q +++ + +R I+ K+ I
Sbjct: 971 RAERA-LLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHIT 1029
Query: 627 QMSQHKYASNVVEKCLEY 644
+ ++ Y +++ K +Y
Sbjct: 1030 TLRKYTYGKHILAKLEKY 1047
Score = 234 (87.4 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 74/291 (25%), Positives = 137/291 (47%)
Query: 380 EDSKKHSFLEEL--KSSNAQK-FELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSV 436
+D F+++ +++ A++ ++I + D G+ IQ+ E S ++K+++
Sbjct: 736 QDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLAL 795
Query: 437 FKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQR--KELAEKLVGQVLPLSLQMYGCRVIQ 494
+ H L ++G VIQK E S DQ+ E+ ++L G VL G V+Q
Sbjct: 796 ATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISEMVKELDGHVLKCVKDQNGNHVVQ 855
Query: 495 KALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVA 553
K +E ++ Q Q +++ G V G VIQ+ +E AE+ I+
Sbjct: 856 KCIECVQ-PQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTE 914
Query: 554 TLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYE 613
L YG VIQ VLEH E + + IV EI AL+Q ++ + V + + E
Sbjct: 915 QLVQDQYGNYVIQHVLEHGRPEDKSK-IVSEIRGKVLALSQHKFASNVVEKCVTHASRAE 973
Query: 614 RTQILSKLA-------GKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 657
R ++ ++ + M + +YA+ VV+K ++ + A+R++++ +I
Sbjct: 974 RALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKI 1024
Score = 47 (21.6 bits), Expect = 1.9e-89, Sum P(2) = 1.9e-89
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 134 NAGTYMPSGNPFYPSF----QPSGAGV-YPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
++ + P G PFY S PS G+ PSQ G++L PP ++ + S + +
Sbjct: 598 SSSSLAPIGQPFYNSLGFSSSPSPIGMPLPSQ--TPGHSLTP---PPSLSSHGSSSSLHL 652
Query: 189 PFDATSGS 196
T+GS
Sbjct: 653 G-GLTNGS 659
Score = 47 (21.6 bits), Expect = 1.9e-89, Sum P(2) = 1.9e-89
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 139 MPSGNPFYPSFQPSGAGVYPSQYNVGGYALN-SALFPPFVAGYPSQGPVPMPFDATSGSS 197
+ + + Y S A + YN G++ + S + P + P P P ++ GSS
Sbjct: 588 LSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPSPIGMPLPSQTPGHSLTPPPSLSSHGSS 647
Query: 198 FNIRTTSVSTGEG 210
++ ++ G G
Sbjct: 648 SSLHLGGLTNGSG 660
Score = 46 (21.3 bits), Expect = 2.4e-89, Sum P(2) = 2.4e-89
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 230 LQSPFVDPLHMQYFQHPFGDAYNASV-QHRLASSGVNGALADPSSKKEP 277
L P V P QY+ P+G Y A++ Q + A++ N A +S+ +P
Sbjct: 335 LAGPAVVP--PQYYGVPWG-VYPANLFQQQAAAAANNTASQQAASQAQP 380
>MGI|MGI:1931751 [details] [associations]
symbol:Pum2 "pumilio 2 (Drosophila)" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0030425
"dendrite" evidence=ISO] [GO:0034063 "stress granule assembly"
evidence=ISO;IDA] [GO:0043025 "neuronal cell body" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 MGI:MGI:1931751 GO:GO:0048471
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0043025 GO:GO:0030425 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 eggNOG:COG5099 GeneTree:ENSGT00390000017241
HOGENOM:HOG000238461 HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP CTD:23369
ChiTaRS:PUM2 EMBL:AY027917 EMBL:AF315590 EMBL:AK122225
EMBL:BC013765 EMBL:BC041773 IPI:IPI00112203 IPI:IPI00400191
IPI:IPI00400192 RefSeq:NP_001153691.1 RefSeq:NP_001153694.1
RefSeq:NP_109648.2 UniGene:Mm.341243 PDB:3GVO PDB:3GVT PDBsum:3GVO
PDBsum:3GVT ProteinModelPortal:Q80U58 SMR:Q80U58 IntAct:Q80U58
STRING:Q80U58 PhosphoSite:Q80U58 PaxDb:Q80U58 PRIDE:Q80U58
Ensembl:ENSMUST00000163569 Ensembl:ENSMUST00000168361
Ensembl:ENSMUST00000169089 Ensembl:ENSMUST00000178015 GeneID:80913
KEGG:mmu:80913 UCSC:uc007mzw.2 UCSC:uc007mzy.2 UCSC:uc007naa.2
InParanoid:Q80U58 OMA:LFDYSSQ EvolutionaryTrace:Q80U58
NextBio:350290 Bgee:Q80U58 CleanEx:MM_PUM2 Genevestigator:Q80U58
GermOnline:ENSMUSG00000020594 Uniprot:Q80U58
Length = 1066
Score = 864 (309.2 bits), Expect = 2.4e-89, Sum P(2) = 2.4e-89
Identities = 167/290 (57%), Positives = 218/290 (75%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L D+ G IVEFS DQHGSRFIQQKLE + E+ VF E+L
Sbjct: 705 SGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEIL 764
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LMTDVFGNYVIQKFFE GS DQ+ LA ++ G VLPL+LQMYGCRVIQKALE I
Sbjct: 765 QAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESIS 824
Query: 502 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 559
Q+ S++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 825 SDQQVISEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHP 884
Query: 560 YGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILS 619
YGCRVIQR+LEHC+ EQ I++E+ + L QDQYGNYV QHVLE G+ ++++I+S
Sbjct: 885 YGCRVIQRILEHCTAEQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVS 943
Query: 620 KLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLY 669
++ GK++ +SQHK+ASNVVEKC+ + AER LLI+E+ Q++ + LY
Sbjct: 944 EIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALY 993
Score = 339 (124.4 bits), Expect = 3.8e-27, Sum P(2) = 3.8e-27
Identities = 82/258 (31%), Positives = 137/258 (53%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV--SVFKEVLPHASKLMTDVFG 453
QK L+ I G ++ ++ +G R IQ+ LE S++++V + KE+ H K + D G
Sbjct: 791 QKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISEMVKELDGHVLKCVKDQNG 850
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD 513
N+V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL
Sbjct: 851 NHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELH 910
Query: 514 GHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCS 573
H + V+DQ GN+VIQ +E E I+S RG+V LS H + V+++ + H S
Sbjct: 911 QHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHAS 970
Query: 574 DEQQGQCIVDEIL------ESA-FALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIV 626
++ ++DE+ SA + + +DQY NYV Q +++ + +R I+ K+ I
Sbjct: 971 RAERA-LLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHIT 1029
Query: 627 QMSQHKYASNVVEKCLEY 644
+ ++ Y +++ K +Y
Sbjct: 1030 TLRKYTYGKHILAKLEKY 1047
Score = 234 (87.4 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 74/291 (25%), Positives = 137/291 (47%)
Query: 380 EDSKKHSFLEEL--KSSNAQK-FELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSV 436
+D F+++ +++ A++ ++I + D G+ IQ+ E S ++K+++
Sbjct: 736 QDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLAL 795
Query: 437 FKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQR--KELAEKLVGQVLPLSLQMYGCRVIQ 494
+ H L ++G VIQK E S DQ+ E+ ++L G VL G V+Q
Sbjct: 796 ATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISEMVKELDGHVLKCVKDQNGNHVVQ 855
Query: 495 KALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVA 553
K +E ++ Q Q +++ G V G VIQ+ +E AE+ I+
Sbjct: 856 KCIECVQ-PQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTE 914
Query: 554 TLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYE 613
L YG VIQ VLEH E + + IV EI AL+Q ++ + V + + E
Sbjct: 915 QLVQDQYGNYVIQHVLEHGRPEDKSK-IVSEIRGKVLALSQHKFASNVVEKCVTHASRAE 973
Query: 614 RTQILSKLA-------GKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 657
R ++ ++ + M + +YA+ VV+K ++ + A+R++++ +I
Sbjct: 974 RALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKI 1024
Score = 47 (21.6 bits), Expect = 2.4e-89, Sum P(2) = 2.4e-89
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 134 NAGTYMPSGNPFYPSF----QPSGAGV-YPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
++ + P G PFY S PS G+ PSQ G++L PP ++ + S + +
Sbjct: 598 SSSSLAPIGQPFYNSLGFSSSPSPIGMPLPSQ--TPGHSLTP---PPSLSSHGSSSSLHL 652
Query: 189 PFDATSGS 196
T+GS
Sbjct: 653 G-GLTNGS 659
Score = 47 (21.6 bits), Expect = 2.4e-89, Sum P(2) = 2.4e-89
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 139 MPSGNPFYPSFQPSGAGVYPSQYNVGGYALN-SALFPPFVAGYPSQGPVPMPFDATSGSS 197
+ + + Y S A + YN G++ + S + P + P P P ++ GSS
Sbjct: 588 LSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPSPIGMPLPSQTPGHSLTPPPSLSSHGSS 647
Query: 198 FNIRTTSVSTGEG 210
++ ++ G G
Sbjct: 648 SSLHLGGLTNGSG 660
Score = 46 (21.3 bits), Expect = 3.0e-89, Sum P(2) = 3.0e-89
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 230 LQSPFVDPLHMQYFQHPFGDAYNASV-QHRLASSGVNGALADPSSKKEP 277
L P V P QY+ P+G Y A++ Q + A++ N A +S+ +P
Sbjct: 334 LAGPAVVP--PQYYGVPWG-VYPANLFQQQAAAAASNTANQQAASQAQP 379
>RGD|1311024 [details] [associations]
symbol:Pum2 "pumilio homolog 2 (Drosophila)" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0034063 "stress granule assembly"
evidence=ISO] [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISO] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 RGD:1311024
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
IPI:IPI00950922 Ensembl:ENSRNOT00000064843 ArrayExpress:D4A0R8
Uniprot:D4A0R8
Length = 904
Score = 863 (308.9 bits), Expect = 3.0e-89, Sum P(2) = 3.0e-89
Identities = 166/290 (57%), Positives = 218/290 (75%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L D+ G IVEFS DQHGSRFIQQKLE + E+ VF E++
Sbjct: 543 SGRSRLLEDFRNNRFPNLQLRDLMGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIV 602
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LMTDVFGNYVIQKFFE GS DQ+ LA ++ G VLPL+LQMYGCRVIQKALE I
Sbjct: 603 QAAYQLMTDVFGNYVIQKFFEFGSLDQKLALANRIRGHVLPLALQMYGCRVIQKALESIS 662
Query: 502 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 559
Q+ S++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 663 SDQQVISEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHP 722
Query: 560 YGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILS 619
YGCRVIQR+LEHC+ EQ I++E+ + L QDQYGNYV QHVLE G+ ++++I+S
Sbjct: 723 YGCRVIQRILEHCTAEQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVS 781
Query: 620 KLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLY 669
++ GK++ +SQHK+ASNVVEKC+ + AER LLI+E+ Q++ + LY
Sbjct: 782 EIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALY 831
Score = 341 (125.1 bits), Expect = 1.2e-27, Sum P(2) = 1.2e-27
Identities = 82/258 (31%), Positives = 138/258 (53%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV--SVFKEVLPHASKLMTDVFG 453
QK L++ I G ++ ++ +G R IQ+ LE S++++V + KE+ H K + D G
Sbjct: 629 QKLALANRIRGHVLPLALQMYGCRVIQKALESISSDQQVISEMVKELDGHVLKCVKDQNG 688
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD 513
N+V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL
Sbjct: 689 NHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELH 748
Query: 514 GHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCS 573
H + V+DQ GN+VIQ +E E I+S RG+V LS H + V+++ + H S
Sbjct: 749 QHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHAS 808
Query: 574 DEQQGQCIVDEIL------ESA-FALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIV 626
++ ++DE+ SA + + +DQY NYV Q +++ + +R I+ K+ I
Sbjct: 809 RAERA-LLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHIT 867
Query: 627 QMSQHKYASNVVEKCLEY 644
+ ++ Y +++ K +Y
Sbjct: 868 TLRKYTYGKHILAKLEKY 885
Score = 236 (88.1 bits), Expect = 6.2e-16, Sum P(2) = 6.2e-16
Identities = 74/291 (25%), Positives = 137/291 (47%)
Query: 380 EDSKKHSFLEEL--KSSNAQK-FELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSV 436
+D F+++ +++ A++ ++I + D G+ IQ+ E S ++K+++
Sbjct: 574 QDQHGSRFIQQKLERATPAERQMVFNEIVQAAYQLMTDVFGNYVIQKFFEFGSLDQKLAL 633
Query: 437 FKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQR--KELAEKLVGQVLPLSLQMYGCRVIQ 494
+ H L ++G VIQK E S DQ+ E+ ++L G VL G V+Q
Sbjct: 634 ANRIRGHVLPLALQMYGCRVIQKALESISSDQQVISEMVKELDGHVLKCVKDQNGNHVVQ 693
Query: 495 KALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVA 553
K +E ++ Q Q +++ G V G VIQ+ +E AE+ I+
Sbjct: 694 KCIECVQ-PQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTE 752
Query: 554 TLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYE 613
L YG VIQ VLEH E + + IV EI AL+Q ++ + V + + E
Sbjct: 753 QLVQDQYGNYVIQHVLEHGRPEDKSK-IVSEIRGKVLALSQHKFASNVVEKCVTHASRAE 811
Query: 614 RTQILSKLA-------GKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 657
R ++ ++ + M + +YA+ VV+K ++ + A+R++++ +I
Sbjct: 812 RALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKI 862
Score = 47 (21.6 bits), Expect = 3.0e-89, Sum P(2) = 3.0e-89
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 134 NAGTYMPSGNPFYPSF----QPSGAGV-YPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
++ + P G PFY S PS G+ PSQ G++L PP ++ + S + +
Sbjct: 436 SSSSLAPIGQPFYNSLGFSSSPSPIGMPLPSQ--TPGHSLTP---PPSLSSHGSSSSLHL 490
Query: 189 PFDATSGS 196
T+GS
Sbjct: 491 G-GLTNGS 497
Score = 47 (21.6 bits), Expect = 3.0e-89, Sum P(2) = 3.0e-89
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 139 MPSGNPFYPSFQPSGAGVYPSQYNVGGYALN-SALFPPFVAGYPSQGPVPMPFDATSGSS 197
+ + + Y S A + YN G++ + S + P + P P P ++ GSS
Sbjct: 426 LSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPSPIGMPLPSQTPGHSLTPPPSLSSHGSS 485
Query: 198 FNIRTTSVSTGEG 210
++ ++ G G
Sbjct: 486 SSLHLGGLTNGSG 498
Score = 46 (21.3 bits), Expect = 3.9e-89, Sum P(2) = 3.9e-89
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 230 LQSPFVDPLHMQYFQHPFGDAYNASV-QHRLASSGVNGALADPSSKKEP 277
L P V P QY+ P+G Y A++ Q + A++ N A +S+ +P
Sbjct: 171 LAGPAVVP--PQYYGVPWG-VYPANLFQQQAAAAASNTANQQAASQAQP 216
>RGD|1307190 [details] [associations]
symbol:Pum1 "pumilio homolog 1 (Drosophila)" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 RGD:1307190 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 IPI:IPI00776810
Ensembl:ENSRNOT00000056233 UCSC:RGD:1307190 ArrayExpress:D3ZHQ4
Uniprot:D3ZHQ4
Length = 944
Score = 835 (299.0 bits), Expect = 4.2e-89, Sum P(3) = 4.2e-89
Identities = 158/288 (54%), Positives = 214/288 (74%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE +A E+ VF E+L
Sbjct: 585 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEIL 644
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 645 QAAYQLMVDVFGNYVIQKFFEFGSHEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 704
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 561
Q++++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 705 SDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYG 764
Query: 562 CRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKL 621
CRVIQR+LEHC +Q I++E+ + L QDQYGNYV QHVLE G+ ++++I++++
Sbjct: 765 CRVIQRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEI 823
Query: 622 AGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLY 669
G ++ +SQHK+ASNVVEKC+ + ER +LI+E+ ++ + LY
Sbjct: 824 RGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALY 871
Score = 331 (121.6 bits), Expect = 3.0e-26, Sum P(3) = 3.0e-26
Identities = 78/259 (30%), Positives = 137/259 (52%)
Query: 394 SNAQKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVF 452
S+ QK L++ I G ++ ++ +G R IQ+ LE ++++ + +E+ H K + D
Sbjct: 668 SHEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQN 727
Query: 453 GNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL 512
GN+V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL
Sbjct: 728 GNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEEL 787
Query: 513 DGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHC 572
H + V+DQ GN+VIQ +E E I++ RG V LS H + V+++ + H
Sbjct: 788 HQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHA 847
Query: 573 SDEQQGQCIVDEIL------ESA-FALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKI 625
S ++ ++DE+ SA + + +DQY NYV Q +++ + +R ++ K+ I
Sbjct: 848 SRTERA-VLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHI 906
Query: 626 VQMSQHKYASNVVEKCLEY 644
+ ++ Y +++ K +Y
Sbjct: 907 ATLRKYTYGKHILAKLEKY 925
Score = 253 (94.1 bits), Expect = 2.0e-17, Sum P(3) = 2.0e-17
Identities = 91/350 (26%), Positives = 161/350 (46%)
Query: 327 SPIASPVLPSSPVGSTSQLGLRHEMRLPQGLNR-----NTGIYSGWQGQRTFEGQ-RTF- 379
S +S PSS + S+S+L +P G +R Y Q R G F
Sbjct: 557 SSASSLFSPSSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNNRYPNLQ-LREIAGHIMEFS 615
Query: 380 EDSKKHSFLE-ELKSSNAQKFEL--SDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSV 436
+D F++ +L+ + A + +L ++I + VD G+ IQ+ E S E+K+++
Sbjct: 616 QDQHGSRFIQLKLERATAAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSHEQKLAL 675
Query: 437 FKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKA 496
+ + H L ++G VIQK E DQ+ E+ +L G VL G V+QK
Sbjct: 676 AERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKC 735
Query: 497 LEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIE-CVPAEKIEFIISAFRGQVAT 554
+E ++ Q Q +++ G V G VIQ+ +E C+P + + I+
Sbjct: 736 IECVQ-PQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLP-ILEELHQHTEQ 793
Query: 555 LSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYER 614
L YG VIQ VLEH E + + IV EI + L+Q ++ + V + + ER
Sbjct: 794 LVQDQYGNYVIQHVLEHGRPEDKSK-IVAEIRGNVLVLSQHKFASNVVEKCVTHASRTER 852
Query: 615 TQILSKLA-------GKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 657
++ ++ + M + +YA+ VV+K ++ + +R++++ +I
Sbjct: 853 AVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKI 902
Score = 47 (21.6 bits), Expect = 4.2e-89, Sum P(3) = 4.2e-89
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 181 PSQGP----VPMPFDATSGSSFNIRTTSVSTGEG 210
PSQGP P P ++ GSS ++ ++ G G
Sbjct: 507 PSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNGSG 540
Score = 40 (19.1 bits), Expect = 4.2e-89, Sum P(3) = 4.2e-89
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 4 SEAPEANGSADVHVDPCVMDPQDIALISNNGPAAVSFSSSPCPDG 48
S GS+D++ +A I ++ ++SFSSSP P G
Sbjct: 463 SRRDSLTGSSDLYK----RTSSSLAPIGHSFYNSLSFSSSPGPVG 503
Score = 39 (18.8 bits), Expect = 1.9e-85, Sum P(2) = 1.9e-85
Identities = 36/175 (20%), Positives = 63/175 (36%)
Query: 129 MNNAHNAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
+N+A G + +G P YP P+ Y Q G +N+ A P P+
Sbjct: 291 VNSALAFGQGLAAGMPGYPVLAPAA---YYDQ--TGALVVNAGARNGLGAPVRLVAPAPV 345
Query: 189 PFDATSGSSFNIRTTSVSTGEGIPHIGSTQHQKFYGHQGLMLQSPFVDPLHMQYFQHPFG 248
++S + + + S + T + F + L Q P P
Sbjct: 346 II-SSSAAQAAVAAAAASANGAAGGLAGTTNGPF---RPLGTQQPQPQPQQQPSNNLASS 401
Query: 249 DAY-NASVQHRLASSGV-NGALADPSSKKEPIVAAYMGDQNLQSSLNG-GPSISN 300
Y N S+ SS + + A P++ ++ L S+L G G +++N
Sbjct: 402 SFYGNNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVAN 456
>DICTYBASE|DDB_G0279735 [details] [associations]
symbol:pufA "RNA binding protein" species:44689
"Dictyostelium discoideum" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 dictyBase:DDB_G0279735
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CM000152_GR GO:GO:0003723 EMBL:AAFI02000032
OMA:FNDSANG RefSeq:XP_641551.1 EnsemblProtists:DDB0233053
GeneID:8622225 KEGG:ddi:DDB_G0279735 InParanoid:Q54WA7
ProtClustDB:CLSZ2846814 Uniprot:Q54WA7
Length = 785
Score = 859 (307.4 bits), Expect = 2.1e-88, Sum P(2) = 2.1e-88
Identities = 168/295 (56%), Positives = 220/295 (74%)
Query: 376 QRTFEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVS 435
Q+T E + + LE+ ++ K ELSDI G I EFS DQ GSR IQQK+E+ S EEK
Sbjct: 433 QQTNEYTTRSQLLEDFRNLK-MKLELSDIKGHIAEFSKDQVGSRIIQQKIENASLEEKQL 491
Query: 436 VFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQK 495
VF EV+ LMTDVFGNYV+QKFFEHG+ +Q++ LA+KL G +L L+LQMYGCRVIQK
Sbjct: 492 VFDEVVVAVHSLMTDVFGNYVLQKFFEHGTTEQKRILADKLSGHILSLTLQMYGCRVIQK 551
Query: 496 ALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATL 555
A+E IEL ++ L+ EL+GH+++CV DQNGNHVIQKCIE +P I+FII +F G + L
Sbjct: 552 AIESIELDKQILLIGELNGHIVQCVTDQNGNHVIQKCIEKIPTHLIQFIIDSFHGHIYQL 611
Query: 556 STHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERT 615
+THPYGCRVIQR+LEHC+++Q I+DE++ A +L QDQYGNYV QHVLE G +++
Sbjct: 612 ATHPYGCRVIQRILEHCAEKQVAP-ILDELMRCAVSLVQDQYGNYVIQHVLENGTPRDKS 670
Query: 616 QILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQ--SEENDNLL 668
I+ KL G+I +SQHK+ASNV+EKC+++G TAER L+I EILG S + N+L
Sbjct: 671 AIVCKLQGQIYNLSQHKFASNVIEKCVQHGCTAERILIINEILGDANSPNSSNVL 725
Score = 269 (99.8 bits), Expect = 2.3e-19, Sum P(2) = 2.3e-19
Identities = 73/260 (28%), Positives = 135/260 (51%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
QK L+D ++G I+ ++ +G R IQ+ +E ++++ + E+ H + +TD GN+
Sbjct: 524 QKRILADKLSGHILSLTLQMYGCRVIQKAIESIELDKQILLIGELNGHIVQCVTDQNGNH 583
Query: 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH 515
VIQK E + + + G + L+ YGCRVIQ+ LE Q + ++ EL
Sbjct: 584 VIQKCIEKIPTHLIQFIIDSFHGHIYQLATHPYGCRVIQRILEHCAEKQVAPILDELMRC 643
Query: 516 VMRCVRDQNGNHVIQKCIEC-VPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEH-CS 573
+ V+DQ GN+VIQ +E P +K I+ +GQ+ LS H + VI++ ++H C+
Sbjct: 644 AVSLVQDQYGNYVIQHVLENGTPRDK-SAIVCKLQGQIYNLSQHKFASNVIEKCVQHGCT 702
Query: 574 DEQQGQCIVDEILESA---------FALAQDQYGNYVTQHVLERGKSYERTQILSKLAGK 624
E+ I++EIL A + +D Y NYV Q +L+ + +R I++++
Sbjct: 703 AERI--LIINEILGDANSPNSSNVLLKILKDPYANYVIQKILDIVEPAQRDMIINRIQPF 760
Query: 625 IVQMSQHKYASNVVEKCLEY 644
+ + + +++ + +Y
Sbjct: 761 VPTLKKVTPGKHIISRIEKY 780
Score = 218 (81.8 bits), Expect = 9.7e-14, Sum P(2) = 9.7e-14
Identities = 86/379 (22%), Positives = 163/379 (43%)
Query: 297 SISNPRKXXXXXXXXXXXXXXXXXXXQFPTSPIASPVL--PSSPVGS-TSQLGLRHEMRL 353
S+S+ Q T+P PV PSSP T++ R ++ L
Sbjct: 388 SLSSSSLSSAATTTTTTTTTTTATATQ-STTPPPPPVTSTPSSPTQQQTNEYTTRSQL-L 445
Query: 354 PQGLNRNTGI-YSGWQGQ-RTFE----GQRTFEDSKKHSFLEELKSSNAQKFELSDIAGR 407
N + S +G F G R + +++ LEE ++ ++
Sbjct: 446 EDFRNLKMKLELSDIKGHIAEFSKDQVGSRIIQQKIENASLEE------KQLVFDEVVVA 499
Query: 408 IVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPD 467
+ D G+ +Q+ EH + E+K + ++ H L ++G VIQK E D
Sbjct: 500 VHSLMTDVFGNYVLQKFFEHGTTEQKRILADKLSGHILSLTLQMYGCRVIQKAIESIELD 559
Query: 468 QRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNH 527
++ L +L G ++ G VIQK +E I H ++ GH+ + G
Sbjct: 560 KQILLIGELNGHIVQCVTDQNGNHVIQKCIEKIPTHLIQFIIDSFHGHIYQLATHPYGCR 619
Query: 528 VIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILE 587
VIQ+ +E +++ I+ +L YG VIQ VLE+ + + IV ++
Sbjct: 620 VIQRILEHCAEKQVAPILDELMRCAVSLVQDQYGNYVIQHVLENGTPRDKS-AIVCKLQG 678
Query: 588 SAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGK---------IVQMSQHKYASNVV 638
+ L+Q ++ + V + ++ G + ER I++++ G ++++ + YA+ V+
Sbjct: 679 QIYNLSQHKFASNVIEKCVQHGCTAERILIINEILGDANSPNSSNVLLKILKDPYANYVI 738
Query: 639 EKCLEYGDTAERELLIEEI 657
+K L+ + A+R+++I I
Sbjct: 739 QKILDIVEPAQRDMIINRI 757
Score = 205 (77.2 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 52/187 (27%), Positives = 99/187 (52%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
+F + G I + + +G R IQ+ LEHC+ ++ + E++ A L+ D +GNYVI
Sbjct: 598 QFIIDSFHGHIYQLATHPYGCRVIQRILEHCAEKQVAPILDELMRCAVSLVQDQYGNYVI 657
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH-- 515
Q E+G+P + + KL GQ+ LS + VI+K ++ ++ ++ E+ G
Sbjct: 658 QHVLENGTPRDKSAIVCKLQGQIYNLSQHKFASNVIEKCVQHGCTAERILIINEILGDAN 717
Query: 516 -------VMRCVRDQNGNHVIQKCIECV-PAEKIEFIISAFRGQVATLSTHPYGCRVIQR 567
+++ ++D N+VIQK ++ V PA++ + II+ + V TL G +I R
Sbjct: 718 SPNSSNVLLKILKDPYANYVIQKILDIVEPAQR-DMIINRIQPFVPTLKKVTPGKHIISR 776
Query: 568 VLEHCSD 574
+ ++ ++
Sbjct: 777 IEKYSAN 783
Score = 43 (20.2 bits), Expect = 2.1e-88, Sum P(2) = 2.1e-88
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 24 PQDIALISNNGPAAVSFSSSPCPDGTETS 52
P ++SNN +V SSSP P + S
Sbjct: 359 PAPNVVLSNNSTNSVVSSSSPPPTTSSPS 387
>FB|FBgn0003165 [details] [associations]
symbol:pum "pumilio" species:7227 "Drosophila melanogaster"
[GO:0005737 "cytoplasm" evidence=NAS;IDA] [GO:0048477 "oogenesis"
evidence=TAS] [GO:0007280 "pole cell migration" evidence=IMP;TAS]
[GO:0042078 "germ-line stem cell division" evidence=NAS;TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0017148
"negative regulation of translation" evidence=TAS] [GO:0007281
"germ cell development" evidence=TAS] [GO:0001709 "cell fate
determination" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] [GO:0008258 "head involution"
evidence=IMP] [GO:0007268 "synaptic transmission" evidence=IMP]
[GO:0008595 "anterior/posterior axis specification, embryo"
evidence=TAS] [GO:0007067 "mitosis" evidence=TAS] [GO:0045786
"negative regulation of cell cycle" evidence=TAS] [GO:0016477 "cell
migration" evidence=TAS] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0007616 "long-term memory"
evidence=IMP;TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0048813 "dendrite morphogenesis" evidence=IMP] [GO:0050804
"regulation of synaptic transmission" evidence=IMP] [GO:0008582
"regulation of synaptic growth at neuromuscular junction"
evidence=IDA] [GO:0048149 "behavioral response to ethanol"
evidence=IMP] [GO:0042059 "negative regulation of epidermal growth
factor receptor signaling pathway" evidence=IMP] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 EMBL:AE014297 GO:GO:0005737 GO:GO:0045892
GO:GO:0007280 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0007067 GO:GO:0008595 GO:GO:0007616 GO:GO:0048477
GO:GO:0048813 GO:GO:0003730 GO:GO:0045727 GO:GO:0042059
GO:GO:0001709 GO:GO:0045786 GO:GO:0008582 GO:GO:0000288
GO:GO:0000900 GO:GO:0008258 GO:GO:0042078 GO:GO:0050804
eggNOG:COG5099 GeneTree:ENSGT00390000017241 EMBL:X62589 EMBL:L07943
EMBL:BT001872 EMBL:BT009970 EMBL:BT021317 PIR:A46221
RefSeq:NP_524285.2 RefSeq:NP_731314.1 RefSeq:NP_731315.1
RefSeq:NP_731316.2 RefSeq:NP_788604.1 UniGene:Dm.1115 PDB:3H3D
PDBsum:3H3D ProteinModelPortal:P25822 SMR:P25822 MINT:MINT-822094
STRING:P25822 PaxDb:P25822 EnsemblMetazoa:FBtr0081990
EnsemblMetazoa:FBtr0081991 EnsemblMetazoa:FBtr0081992
EnsemblMetazoa:FBtr0333667 GeneID:41094 KEGG:dme:Dmel_CG9755
UCSC:CG9755-RA CTD:41094 FlyBase:FBgn0003165 InParanoid:P25822
OMA:LASPTIC OrthoDB:EOG4HMGRT PhylomeDB:P25822
EvolutionaryTrace:P25822 GenomeRNAi:41094 NextBio:822132
Bgee:P25822 GermOnline:CG9755 Uniprot:P25822
Length = 1533
Score = 845 (302.5 bits), Expect = 3.0e-88, Sum P(3) = 3.0e-88
Identities = 164/282 (58%), Positives = 209/282 (74%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKL 447
LE+ ++ +L D+A IVEFS DQHGSRFIQQKLE +A EK VF E+L A L
Sbjct: 1096 LEDFRNQRYPNLQLRDLANHIVEFSQDQHGSRFIQQKLERATAAEKQMVFSEILAAAYSL 1155
Query: 448 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQ 507
MTDVFGNYVIQKFFE G+P+Q+ L ++ G VL L+LQMYGCRVIQKALE I Q+ +
Sbjct: 1156 MTDVFGNYVIQKFFEFGTPEQKNTLGMQVKGHVLQLALQMYGCRVIQKALESISPEQQQE 1215
Query: 508 LVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQR 567
+V ELDGHV++CV+DQNGNHV+QKCIECV ++FII+AF+GQV +LSTHPYGCRVIQR
Sbjct: 1216 IVHELDGHVLKCVKDQNGNHVVQKCIECVDPVALQFIINAFKGQVYSLSTHPYGCRVIQR 1275
Query: 568 VLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQ 627
+LEHC+ EQ I+DE+ E L QDQYGNYV QHVLE GK +++ +++ + GK++
Sbjct: 1276 ILEHCTAEQTTP-ILDELHEHTEQLIQDQYGNYVIQHVLEHGKQEDKSILINSVRGKVLV 1334
Query: 628 MSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLY 669
+SQHK+ASNVVEKC+ + ER LI+E+ NDN L+
Sbjct: 1335 LSQHKFASNVVEKCVTHATRGERTGLIDEVC---TFNDNALH 1373
Score = 323 (118.8 bits), Expect = 1.4e-25, Sum P(3) = 1.4e-25
Identities = 75/254 (29%), Positives = 136/254 (53%)
Query: 397 QKFELS-DIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
QK L + G +++ ++ +G R IQ+ LE S E++ + E+ H K + D GN+
Sbjct: 1176 QKNTLGMQVKGHVLQLALQMYGCRVIQKALESISPEQQQEIVHELDGHVLKCVKDQNGNH 1235
Query: 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH 515
V+QK E P + + GQV LS YGCRVIQ+ LE Q + ++ EL H
Sbjct: 1236 VVQKCIECVDPVALQFIINAFKGQVYSLSTHPYGCRVIQRILEHCTAEQTTPILDELHEH 1295
Query: 516 VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCS-D 574
+ ++DQ GN+VIQ +E E +I++ RG+V LS H + V+++ + H +
Sbjct: 1296 TEQLIQDQYGNYVIQHVLEHGKQEDKSILINSVRGKVLVLSQHKFASNVVEKCVTHATRG 1355
Query: 575 EQQGQCIVDEIL---ESAF-ALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQ 630
E+ G ++DE+ ++A + +DQY NYV Q +++ + + ++++K+ + + +
Sbjct: 1356 ERTG--LIDEVCTFNDNALHVMMKDQYANYVVQKMIDVSEPTQLKKLMTKIRPHMAALRK 1413
Query: 631 HKYASNVVEKCLEY 644
+ Y ++ K +Y
Sbjct: 1414 YTYGKHINAKLEKY 1427
Score = 233 (87.1 bits), Expect = 1.3e-15, Sum P(3) = 1.3e-15
Identities = 70/285 (24%), Positives = 132/285 (46%)
Query: 380 EDSKKHSFLEE-LKSSNAQKFEL--SDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSV 436
+D F+++ L+ + A + ++ S+I D G+ IQ+ E + E+K ++
Sbjct: 1121 QDQHGSRFIQQKLERATAAEKQMVFSEILAAAYSLMTDVFGNYVIQKFFEFGTPEQKNTL 1180
Query: 437 FKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKA 496
+V H +L ++G VIQK E SP+Q++E+ +L G VL G V+QK
Sbjct: 1181 GMQVKGHVLQLALQMYGCRVIQKALESISPEQQQEIVHELDGHVLKCVKDQNGNHVVQKC 1240
Query: 497 LEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLS 556
+E ++ ++ G V G VIQ+ +E AE+ I+ L
Sbjct: 1241 IECVDPVALQFIINAFKGQVYSLSTHPYGCRVIQRILEHCTAEQTTPILDELHEHTEQLI 1300
Query: 557 THPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQ 616
YG VIQ VLEH E + +++ + L+Q ++ + V + + ERT
Sbjct: 1301 QDQYGNYVIQHVLEHGKQEDKS-ILINSVRGKVLVLSQHKFASNVVEKCVTHATRGERTG 1359
Query: 617 ILSKLA----GKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 657
++ ++ + M + +YA+ VV+K ++ + + + L+ +I
Sbjct: 1360 LIDEVCTFNDNALHVMMKDQYANYVVQKMIDVSEPTQLKKLMTKI 1404
Score = 57 (25.1 bits), Expect = 3.0e-88, Sum P(3) = 3.0e-88
Identities = 24/94 (25%), Positives = 37/94 (39%)
Query: 89 RKKQEEQKYQGRIMMQQYPSAXXXXXXXXXXXXXXXXSLGMNNAHNAGTYMPSGNPFYPS 148
+++Q++Q+ Q + QY + S G H+ G P N P
Sbjct: 262 QQQQQQQQQQQQQHPGQYNANLLNHAAALGHMSSYAQSGGSMYDHHGGAMHPGMNGGMPK 321
Query: 149 FQP---SGAGVYPSQY-NVGGYA---LNSALFPP 175
QP GAG P Y +GG + +A+ PP
Sbjct: 322 QQPLGPPGAGG-PQDYVYMGGQTTVPMGAAMMPP 354
Score = 42 (19.8 bits), Expect = 3.0e-88, Sum P(3) = 3.0e-88
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 260 ASSGVNGALADPSSKKEPIVAAYMGDQNLQSSLNG 294
A+SG GAL ++ P+ A + QS L G
Sbjct: 957 AASGAYGALGAGNASASPLGAPITPPPSAQSCLLG 991
Score = 39 (18.8 bits), Expect = 2.2e-84, Sum P(2) = 2.2e-84
Identities = 7/12 (58%), Positives = 11/12 (91%)
Query: 84 AESRMRKKQEEQ 95
AESR R++Q++Q
Sbjct: 997 AESRQRQQQQQQ 1008
>MGI|MGI:1931749 [details] [associations]
symbol:Pum1 "pumilio 1 (Drosophila)" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 MGI:MGI:1931749
GO:GO:0005737 GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 eggNOG:COG5099
GeneTree:ENSGT00390000017241 CTD:9698 HOGENOM:HOG000238461
HOVERGEN:HBG049462 OMA:RHVVGVK OrthoDB:EOG4P8FHP ChiTaRS:PUM1
EMBL:AF321909 EMBL:AK122205 EMBL:AK052145 EMBL:BC048174
EMBL:BC050747 IPI:IPI00330262 IPI:IPI00400349 IPI:IPI00400350
IPI:IPI00400351 RefSeq:NP_001153075.1 RefSeq:NP_001153076.1
RefSeq:NP_001153077.1 RefSeq:NP_001153078.1 RefSeq:NP_109647.2
UniGene:Mm.440206 ProteinModelPortal:Q80U78 SMR:Q80U78
IntAct:Q80U78 STRING:Q80U78 PhosphoSite:Q80U78 PaxDb:Q80U78
PRIDE:Q80U78 Ensembl:ENSMUST00000030315 Ensembl:ENSMUST00000097862
Ensembl:ENSMUST00000097864 GeneID:80912 KEGG:mmu:80912
UCSC:uc008uzl.2 InParanoid:Q80U78 NextBio:350286 Bgee:Q80U78
CleanEx:MM_PUM1 Genevestigator:Q80U78 Uniprot:Q80U78
Length = 1189
Score = 824 (295.1 bits), Expect = 5.9e-87, Sum P(3) = 5.9e-87
Identities = 158/290 (54%), Positives = 214/290 (73%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE +A E+ VF E+L
Sbjct: 828 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEIL 887
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 888 QAAYQLMVDVFGNYVIQKFFEFGSHEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 947
Query: 502 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 559
Q+ +++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 948 SDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHP 1007
Query: 560 YGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILS 619
YGCRVIQR+LEHC +Q I++E+ + L QDQYGNYV QHVLE G+ ++++I++
Sbjct: 1008 YGCRVIQRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVA 1066
Query: 620 KLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLY 669
++ G ++ +SQHK+ASNVVEKC+ + ER +LI+E+ ++ + LY
Sbjct: 1067 EIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALY 1116
Score = 327 (120.2 bits), Expect = 2.8e-25, Sum P(3) = 2.8e-25
Identities = 79/261 (30%), Positives = 138/261 (52%)
Query: 394 SNAQKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV--SVFKEVLPHASKLMTD 450
S+ QK L++ I G ++ ++ +G R IQ+ LE ++++V + +E+ H K + D
Sbjct: 911 SHEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKD 970
Query: 451 VFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVL 510
GN+V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++
Sbjct: 971 QNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILE 1030
Query: 511 ELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLE 570
EL H + V+DQ GN+VIQ +E E I++ RG V LS H + V+++ +
Sbjct: 1031 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVT 1090
Query: 571 HCSDEQQGQCIVDEIL------ESA-FALAQDQYGNYVTQHVLERGKSYERTQILSKLAG 623
H S ++ ++DE+ SA + + +DQY NYV Q +++ + +R ++ K+
Sbjct: 1091 HASRTERA-VLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRP 1149
Query: 624 KIVQMSQHKYASNVVEKCLEY 644
I + ++ Y +++ K +Y
Sbjct: 1150 HIATLRKYTYGKHILAKLEKY 1170
Score = 236 (88.1 bits), Expect = 4.0e-15, Sum P(3) = 4.0e-15
Identities = 75/292 (25%), Positives = 139/292 (47%)
Query: 380 EDSKKHSFLE-ELKSSNAQKFEL--SDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSV 436
+D F++ +L+ + A + +L ++I + VD G+ IQ+ E S E+K+++
Sbjct: 859 QDQHGSRFIQLKLERATAAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSHEQKLAL 918
Query: 437 FKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQR--KELAEKLVGQVLPLSLQMYGCRVIQ 494
+ + H L ++G VIQK E DQ+ E+ +L G VL G V+Q
Sbjct: 919 AERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQ 978
Query: 495 KALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIE-CVPAEKIEFIISAFRGQV 552
K +E ++ Q Q +++ G V G VIQ+ +E C+P + + I+
Sbjct: 979 KCIECVQ-PQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLP-ILEELHQHT 1036
Query: 553 ATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSY 612
L YG VIQ VLEH E + + IV EI + L+Q ++ + V + +
Sbjct: 1037 EQLVQDQYGNYVIQHVLEHGRPEDKSK-IVAEIRGNVLVLSQHKFASNVVEKCVTHASRT 1095
Query: 613 ERTQILSKLA-------GKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 657
ER ++ ++ + M + +YA+ VV+K ++ + +R++++ +I
Sbjct: 1096 ERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKI 1147
Score = 47 (21.6 bits), Expect = 5.9e-87, Sum P(3) = 5.9e-87
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 181 PSQGP----VPMPFDATSGSSFNIRTTSVSTGEG 210
PSQGP P P ++ GSS ++ ++ G G
Sbjct: 750 PSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNGSG 783
Score = 40 (19.1 bits), Expect = 5.9e-87, Sum P(3) = 5.9e-87
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 4 SEAPEANGSADVHVDPCVMDPQDIALISNNGPAAVSFSSSPCPDG 48
S GS+D++ +A I ++ +++S+SSSP P G
Sbjct: 706 SRRDSLTGSSDLYK----RTSSSLAPIGHSFYSSLSYSSSPGPVG 746
Score = 39 (18.8 bits), Expect = 1.3e-83, Sum P(2) = 1.3e-83
Identities = 36/175 (20%), Positives = 63/175 (36%)
Query: 129 MNNAHNAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
+N+A G + +G P YP P+ Y Q G +N+ A P P+
Sbjct: 534 VNSALAFGQGLAAGMPGYPVLAPAA---YYDQ--TGALVVNAGARNGLGAPVRLVAPAPV 588
Query: 189 PFDATSGSSFNIRTTSVSTGEGIPHIGSTQHQKFYGHQGLMLQSPFVDPLHMQYFQHPFG 248
++S + + + S + T + F + L Q P P
Sbjct: 589 II-SSSAAQAAVAAAAASANGAAGGLAGTTNGPF---RPLGTQQPQPQPQQQPSNNLASS 644
Query: 249 DAY-NASVQHRLASSGV-NGALADPSSKKEPIVAAYMGDQNLQSSLNG-GPSISN 300
Y N S+ SS + + A P++ ++ L S+L G G +++N
Sbjct: 645 SFYGNNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVAN 699
>UNIPROTKB|F1STL2 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 EMBL:CU928875
Ensembl:ENSSSCT00000003986 OMA:ANHVVEF Uniprot:F1STL2
Length = 735
Score = 829 (296.9 bits), Expect = 9.2e-86, Sum P(2) = 9.2e-86
Identities = 157/288 (54%), Positives = 213/288 (73%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 376 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 435
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 436 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 495
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 561
Q++++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 496 SDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYG 555
Query: 562 CRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKL 621
CRVIQR+LEHC +Q I++E+ + L QDQYGNYV QHVLE G+ ++++I++++
Sbjct: 556 CRVIQRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEI 614
Query: 622 AGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLY 669
G ++ +SQHK+ASNVVEKC+ + ER +LI+E+ ++ + LY
Sbjct: 615 RGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALY 662
Score = 328 (120.5 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 77/256 (30%), Positives = 135/256 (52%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
QK L++ I G ++ ++ +G R IQ+ LE ++++ + +E+ H K + D GN+
Sbjct: 462 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNH 521
Query: 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH 515
V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL H
Sbjct: 522 VVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQH 581
Query: 516 VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDE 575
+ V+DQ GN+VIQ +E E I++ RG V LS H + V+++ + H S
Sbjct: 582 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRT 641
Query: 576 QQGQCIVDEIL------ESA-FALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQM 628
++ ++DE+ SA + + +DQY NYV Q +++ + +R ++ K+ I +
Sbjct: 642 ERA-VLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKIRPHIATL 700
Query: 629 SQHKYASNVVEKCLEY 644
++ Y +++ K +Y
Sbjct: 701 RKYTYGKHILAKLEKY 716
Score = 256 (95.2 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 92/350 (26%), Positives = 156/350 (44%)
Query: 327 SPIASPVLPSSPVGSTSQLGLRHEMRLPQGLNR-----NTGIYSGWQGQRTFEGQ-RTFE 380
S +S PSS + S+S+L +P G +R Y Q R G F
Sbjct: 348 SSASSLFSPSSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNNRYPNLQ-LREIAGHIMEFS 406
Query: 381 DSKKHSFLEELKSSNAQKFE----LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSV 436
+ S +LK A E ++I + VD G+ IQ+ E S E+K+++
Sbjct: 407 QDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLAL 466
Query: 437 FKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKA 496
+ + H L ++G VIQK E DQ+ E+ +L G VL G V+QK
Sbjct: 467 AERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKC 526
Query: 497 LEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIE-CVPAEKIEFIISAFRGQVAT 554
+E ++ Q Q +++ G V G VIQ+ +E C+P + + I+
Sbjct: 527 IECVQ-PQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLP-ILEELHQHTEQ 584
Query: 555 LSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYER 614
L YG VIQ VLEH E + + IV EI + L+Q ++ + V + + ER
Sbjct: 585 LVQDQYGNYVIQHVLEHGRPEDKSK-IVAEIRGNVLVLSQHKFASNVVEKCVTHASRTER 643
Query: 615 TQILSKLA-------GKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 657
++ ++ + M + +YA+ VV+K ++ + A+R++++ +I
Sbjct: 644 AVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKI 693
Score = 48 (22.0 bits), Expect = 9.2e-86, Sum P(2) = 9.2e-86
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 159 SQYNVGGYALNSALFPPFVAGYPSQGP----VPMPFDATSGSSFNIRTTSVSTGEG 210
S YN G + +S+ P + PSQGP P P ++ GSS ++ ++ G G
Sbjct: 279 SFYN--GLSFSSSPGPVGMP-LPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNGSG 331
Score = 39 (18.8 bits), Expect = 8.2e-85, Sum P(2) = 8.2e-85
Identities = 36/175 (20%), Positives = 63/175 (36%)
Query: 129 MNNAHNAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
+N+A G + +G P YP P+ Y Q G +N+ A P P+
Sbjct: 82 VNSALAFGQGLAAGMPGYPVLAPAA---YYDQ--TGALVVNAGARNGLGAPVRLVAPAPV 136
Query: 189 PFDATSGSSFNIRTTSVSTGEGIPHIGSTQHQKFYGHQGLMLQSPFVDPLHMQYFQHPFG 248
++S + + + S + T + F + L Q P P
Sbjct: 137 II-SSSAAQAAVAAAAASANGAAGGLAGTTNGPF---RPLGTQQPQPQPQQQPSNNLASS 192
Query: 249 DAY-NASVQHRLASSGV-NGALADPSSKKEPIVAAYMGDQNLQSSLNG-GPSISN 300
Y N S+ SS + + A P++ ++ L S+L G G +++N
Sbjct: 193 SFYGNNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVAN 247
Score = 37 (18.1 bits), Expect = 1.3e-84, Sum P(2) = 1.3e-84
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 38 VSFSSSPCPDG 48
+SFSSSP P G
Sbjct: 284 LSFSSSPGPVG 294
>UNIPROTKB|B4DG92 [details] [associations]
symbol:PUM1 "cDNA FLJ56067, highly similar to Pumilio
homolog 1" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
HOGENOM:HOG000238461 HOVERGEN:HBG049462 EMBL:AL356320 EMBL:AL445235
UniGene:Hs.281707 HGNC:HGNC:14957 ChiTaRS:PUM1 EMBL:AK294477
IPI:IPI00939543 SMR:B4DG92 STRING:B4DG92 Ensembl:ENST00000373742
UCSC:uc010ogb.1 Uniprot:B4DG92
Length = 1127
Score = 829 (296.9 bits), Expect = 9.2e-86, Sum P(2) = 9.2e-86
Identities = 157/288 (54%), Positives = 213/288 (73%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 768 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 827
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 828 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 887
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 561
Q++++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 888 SDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYG 947
Query: 562 CRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKL 621
CRVIQR+LEHC +Q I++E+ + L QDQYGNYV QHVLE G+ ++++I++++
Sbjct: 948 CRVIQRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEI 1006
Query: 622 AGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLY 669
G ++ +SQHK+ASNVVEKC+ + ER +LI+E+ ++ + LY
Sbjct: 1007 RGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALY 1054
Score = 327 (120.2 bits), Expect = 8.1e-26, Sum P(2) = 8.1e-26
Identities = 77/256 (30%), Positives = 135/256 (52%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
QK L++ I G ++ ++ +G R IQ+ LE ++++ + +E+ H K + D GN+
Sbjct: 854 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNH 913
Query: 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH 515
V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL H
Sbjct: 914 VVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQH 973
Query: 516 VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDE 575
+ V+DQ GN+VIQ +E E I++ RG V LS H + V+++ + H S
Sbjct: 974 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRT 1033
Query: 576 QQGQCIVDEIL------ESA-FALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQM 628
++ ++DE+ SA + + +DQY NYV Q +++ + +R ++ K+ I +
Sbjct: 1034 ERA-VLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATL 1092
Query: 629 SQHKYASNVVEKCLEY 644
++ Y +++ K +Y
Sbjct: 1093 RKYTYGKHILAKLEKY 1108
Score = 252 (93.8 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 91/350 (26%), Positives = 155/350 (44%)
Query: 327 SPIASPVLPSSPVGSTSQLGLRHEMRLPQGLNR-----NTGIYSGWQGQRTFEGQ-RTFE 380
S +S PSS + S+S+L +P G +R Y Q R G F
Sbjct: 740 SSASSLFSPSSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNNRYPNLQ-LREIAGHIMEFS 798
Query: 381 DSKKHSFLEELKSSNAQKFE----LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSV 436
+ S +LK A E ++I + VD G+ IQ+ E S E+K+++
Sbjct: 799 QDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLAL 858
Query: 437 FKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKA 496
+ + H L ++G VIQK E DQ+ E+ +L G VL G V+QK
Sbjct: 859 AERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKC 918
Query: 497 LEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIE-CVPAEKIEFIISAFRGQVAT 554
+E ++ Q Q +++ G V G VIQ+ +E C+P + + I+
Sbjct: 919 IECVQ-PQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLP-ILEELHQHTEQ 976
Query: 555 LSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYER 614
L YG VIQ VLEH E + + IV EI + L+Q ++ + V + + ER
Sbjct: 977 LVQDQYGNYVIQHVLEHGRPEDKSK-IVAEIRGNVLVLSQHKFASNVVEKCVTHASRTER 1035
Query: 615 TQILSKLA-------GKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 657
++ ++ + M + +YA+ VV+K ++ + +R++++ +I
Sbjct: 1036 AVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKI 1085
Score = 48 (22.0 bits), Expect = 9.2e-86, Sum P(2) = 9.2e-86
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 159 SQYNVGGYALNSALFPPFVAGYPSQGP----VPMPFDATSGSSFNIRTTSVSTGEG 210
S YN G + +S+ P + PSQGP P P ++ GSS ++ ++ G G
Sbjct: 671 SFYN--GLSFSSSPGPVGMP-LPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNGSG 723
Score = 39 (18.8 bits), Expect = 8.2e-85, Sum P(2) = 8.2e-85
Identities = 36/175 (20%), Positives = 63/175 (36%)
Query: 129 MNNAHNAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
+N+A G + +G P YP P+ Y Q G +N+ A P P+
Sbjct: 474 VNSALAFGQGLAAGMPGYPVLAPAA---YYDQ--TGALVVNAGARNGLGAPVRLVAPAPV 528
Query: 189 PFDATSGSSFNIRTTSVSTGEGIPHIGSTQHQKFYGHQGLMLQSPFVDPLHMQYFQHPFG 248
++S + + + S + T + F + L Q P P
Sbjct: 529 II-SSSAAQAAVAAAAASANGAAGGLAGTTNGPF---RPLGTQQPQPQPQQQPNNNLASS 584
Query: 249 DAY-NASVQHRLASSGV-NGALADPSSKKEPIVAAYMGDQNLQSSLNG-GPSISN 300
Y N S+ SS + + A P++ ++ L S+L G G +++N
Sbjct: 585 SFYGNNSLNSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVAN 639
Score = 37 (18.1 bits), Expect = 1.3e-84, Sum P(2) = 1.3e-84
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 38 VSFSSSPCPDG 48
+SFSSSP P G
Sbjct: 676 LSFSSSPGPVG 686
>UNIPROTKB|E9PR38 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 IPI:IPI00909786 ProteinModelPortal:E9PR38 SMR:E9PR38
Ensembl:ENST00000424085 ArrayExpress:E9PR38 Bgee:E9PR38
Uniprot:E9PR38
Length = 944
Score = 829 (296.9 bits), Expect = 9.2e-86, Sum P(2) = 9.2e-86
Identities = 157/288 (54%), Positives = 213/288 (73%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 585 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 644
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 645 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 704
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 561
Q++++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 705 SDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYG 764
Query: 562 CRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKL 621
CRVIQR+LEHC +Q I++E+ + L QDQYGNYV QHVLE G+ ++++I++++
Sbjct: 765 CRVIQRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEI 823
Query: 622 AGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLY 669
G ++ +SQHK+ASNVVEKC+ + ER +LI+E+ ++ + LY
Sbjct: 824 RGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALY 871
Score = 327 (120.2 bits), Expect = 4.4e-26, Sum P(2) = 4.4e-26
Identities = 77/256 (30%), Positives = 135/256 (52%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
QK L++ I G ++ ++ +G R IQ+ LE ++++ + +E+ H K + D GN+
Sbjct: 671 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNH 730
Query: 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH 515
V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL H
Sbjct: 731 VVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQH 790
Query: 516 VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDE 575
+ V+DQ GN+VIQ +E E I++ RG V LS H + V+++ + H S
Sbjct: 791 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRT 850
Query: 576 QQGQCIVDEIL------ESA-FALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQM 628
++ ++DE+ SA + + +DQY NYV Q +++ + +R ++ K+ I +
Sbjct: 851 ERA-VLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATL 909
Query: 629 SQHKYASNVVEKCLEY 644
++ Y +++ K +Y
Sbjct: 910 RKYTYGKHILAKLEKY 925
Score = 252 (93.8 bits), Expect = 9.8e-18, Sum P(2) = 9.8e-18
Identities = 91/350 (26%), Positives = 155/350 (44%)
Query: 327 SPIASPVLPSSPVGSTSQLGLRHEMRLPQGLNR-----NTGIYSGWQGQRTFEGQ-RTFE 380
S +S PSS + S+S+L +P G +R Y Q R G F
Sbjct: 557 SSASSLFSPSSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNNRYPNLQ-LREIAGHIMEFS 615
Query: 381 DSKKHSFLEELKSSNAQKFE----LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSV 436
+ S +LK A E ++I + VD G+ IQ+ E S E+K+++
Sbjct: 616 QDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLAL 675
Query: 437 FKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKA 496
+ + H L ++G VIQK E DQ+ E+ +L G VL G V+QK
Sbjct: 676 AERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKC 735
Query: 497 LEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIE-CVPAEKIEFIISAFRGQVAT 554
+E ++ Q Q +++ G V G VIQ+ +E C+P + + I+
Sbjct: 736 IECVQ-PQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLP-ILEELHQHTEQ 793
Query: 555 LSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYER 614
L YG VIQ VLEH E + + IV EI + L+Q ++ + V + + ER
Sbjct: 794 LVQDQYGNYVIQHVLEHGRPEDKSK-IVAEIRGNVLVLSQHKFASNVVEKCVTHASRTER 852
Query: 615 TQILSKLA-------GKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 657
++ ++ + M + +YA+ VV+K ++ + +R++++ +I
Sbjct: 853 AVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKI 902
Score = 48 (22.0 bits), Expect = 9.2e-86, Sum P(2) = 9.2e-86
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 159 SQYNVGGYALNSALFPPFVAGYPSQGP----VPMPFDATSGSSFNIRTTSVSTGEG 210
S YN G + +S+ P + PSQGP P P ++ GSS ++ ++ G G
Sbjct: 488 SFYN--GLSFSSSPGPVGMP-LPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNGSG 540
Score = 39 (18.8 bits), Expect = 8.2e-85, Sum P(2) = 8.2e-85
Identities = 36/175 (20%), Positives = 63/175 (36%)
Query: 129 MNNAHNAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
+N+A G + +G P YP P+ Y Q G +N+ A P P+
Sbjct: 291 VNSALAFGQGLAAGMPGYPVLAPAA---YYDQ--TGALVVNAGARNGLGAPVRLVAPAPV 345
Query: 189 PFDATSGSSFNIRTTSVSTGEGIPHIGSTQHQKFYGHQGLMLQSPFVDPLHMQYFQHPFG 248
++S + + + S + T + F + L Q P P
Sbjct: 346 II-SSSAAQAAVAAAAASANGAAGGLAGTTNGPF---RPLGTQQPQPQPQQQPNNNLASS 401
Query: 249 DAY-NASVQHRLASSGV-NGALADPSSKKEPIVAAYMGDQNLQSSLNG-GPSISN 300
Y N S+ SS + + A P++ ++ L S+L G G +++N
Sbjct: 402 SFYGNNSLNSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVAN 456
Score = 37 (18.1 bits), Expect = 1.3e-84, Sum P(2) = 1.3e-84
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 38 VSFSSSPCPDG 48
+SFSSSP P G
Sbjct: 493 LSFSSSPGPVG 503
>UNIPROTKB|E1BE82 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 CTD:9698 OMA:RHVVGVK
EMBL:DAAA02006263 EMBL:DAAA02006264 EMBL:DAAA02006265
IPI:IPI00713931 RefSeq:NP_001180052.1 UniGene:Bt.44441
Ensembl:ENSBTAT00000025262 GeneID:535450 KEGG:bta:535450
NextBio:20876753 Uniprot:E1BE82
Length = 1186
Score = 829 (296.9 bits), Expect = 3.2e-85, Sum P(2) = 3.2e-85
Identities = 157/288 (54%), Positives = 213/288 (73%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 827 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 886
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 887 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 946
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 561
Q++++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 947 SDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYG 1006
Query: 562 CRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKL 621
CRVIQR+LEHC +Q I++E+ + L QDQYGNYV QHVLE G+ ++++I++++
Sbjct: 1007 CRVIQRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEI 1065
Query: 622 AGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLY 669
G ++ +SQHK+ASNVVEKC+ + ER +LI+E+ ++ + LY
Sbjct: 1066 RGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALY 1113
Score = 328 (120.5 bits), Expect = 7.4e-26, Sum P(2) = 7.4e-26
Identities = 77/256 (30%), Positives = 135/256 (52%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
QK L++ I G ++ ++ +G R IQ+ LE ++++ + +E+ H K + D GN+
Sbjct: 913 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNH 972
Query: 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH 515
V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL H
Sbjct: 973 VVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQH 1032
Query: 516 VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDE 575
+ V+DQ GN+VIQ +E E I++ RG V LS H + V+++ + H S
Sbjct: 1033 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRT 1092
Query: 576 QQGQCIVDEIL------ESA-FALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQM 628
++ ++DE+ SA + + +DQY NYV Q +++ + +R ++ K+ I +
Sbjct: 1093 ERA-VLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKIRPHIATL 1151
Query: 629 SQHKYASNVVEKCLEY 644
++ Y +++ K +Y
Sbjct: 1152 RKYTYGKHILAKLEKY 1167
Score = 256 (95.2 bits), Expect = 6.9e-18, Sum P(2) = 6.9e-18
Identities = 92/350 (26%), Positives = 156/350 (44%)
Query: 327 SPIASPVLPSSPVGSTSQLGLRHEMRLPQGLNR-----NTGIYSGWQGQRTFEGQ-RTFE 380
S +S PSS + S+S+L +P G +R Y Q R G F
Sbjct: 799 SSASSLFSPSSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNNRYPNLQ-LREIAGHIMEFS 857
Query: 381 DSKKHSFLEELKSSNAQKFE----LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSV 436
+ S +LK A E ++I + VD G+ IQ+ E S E+K+++
Sbjct: 858 QDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLAL 917
Query: 437 FKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKA 496
+ + H L ++G VIQK E DQ+ E+ +L G VL G V+QK
Sbjct: 918 AERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKC 977
Query: 497 LEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIE-CVPAEKIEFIISAFRGQVAT 554
+E ++ Q Q +++ G V G VIQ+ +E C+P + + I+
Sbjct: 978 IECVQ-PQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLP-ILEELHQHTEQ 1035
Query: 555 LSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYER 614
L YG VIQ VLEH E + + IV EI + L+Q ++ + V + + ER
Sbjct: 1036 LVQDQYGNYVIQHVLEHGRPEDKSK-IVAEIRGNVLVLSQHKFASNVVEKCVTHASRTER 1094
Query: 615 TQILSKLA-------GKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 657
++ ++ + M + +YA+ VV+K ++ + A+R++++ +I
Sbjct: 1095 AVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKI 1144
Score = 48 (22.0 bits), Expect = 3.2e-85, Sum P(2) = 3.2e-85
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 159 SQYNVGGYALNSALFPPFVAGYPSQGP----VPMPFDATSGSSFNIRTTSVSTGEG 210
S YN G + +S+ P + PSQGP P P ++ GSS ++ ++ G G
Sbjct: 730 SFYN--GLSFSSSPGPVGMP-LPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNGSG 782
Score = 39 (18.8 bits), Expect = 2.8e-84, Sum P(2) = 2.8e-84
Identities = 36/175 (20%), Positives = 63/175 (36%)
Query: 129 MNNAHNAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
+N+A G + +G P YP P+ Y Q G +N+ A P P+
Sbjct: 533 VNSALAFGQGLAAGMPGYPVLAPAA---YYDQ--TGALVVNAGARNGLGAPVRLVAPAPV 587
Query: 189 PFDATSGSSFNIRTTSVSTGEGIPHIGSTQHQKFYGHQGLMLQSPFVDPLHMQYFQHPFG 248
++S + + + S + T + F + L Q P P
Sbjct: 588 II-SSSAAQAAVAAAAASANGAAGGLAGTTNGPF---RPLGTQQPQPQPQQQPSNNLASS 643
Query: 249 DAY-NASVQHRLASSGV-NGALADPSSKKEPIVAAYMGDQNLQSSLNG-GPSISN 300
Y N S+ SS + + A P++ ++ L S+L G G +++N
Sbjct: 644 SFYGNNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVAN 698
Score = 37 (18.1 bits), Expect = 4.6e-84, Sum P(2) = 4.6e-84
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 38 VSFSSSPCPDG 48
+SFSSSP P G
Sbjct: 735 LSFSSSPGPVG 745
>UNIPROTKB|Q14671 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006892 "post-Golgi vesicle-mediated transport" evidence=TAS]
[GO:0016044 "cellular membrane organization" evidence=TAS]
Reactome:REACT_11123 InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0005829 GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 EMBL:CH471059 GO:GO:0003723 GO:GO:0016044
GO:GO:0006892 eggNOG:COG5099 CTD:9698 HOGENOM:HOG000238461
HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP EMBL:AF315592 EMBL:D43951
EMBL:AL356320 EMBL:AL445235 EMBL:AK291779 EMBL:BC013398
IPI:IPI00551014 IPI:IPI00941189 RefSeq:NP_001018494.1
RefSeq:NP_055491.1 UniGene:Hs.281707 PDB:1IB2 PDB:1M8W PDB:1M8X
PDB:1M8Y PDB:1M8Z PDB:2YJY PDB:3BSB PDB:3BSX PDB:3Q0L PDB:3Q0M
PDB:3Q0N PDB:3Q0O PDB:3Q0P PDBsum:1IB2 PDBsum:1M8W PDBsum:1M8X
PDBsum:1M8Y PDBsum:1M8Z PDBsum:2YJY PDBsum:3BSB PDBsum:3BSX
PDBsum:3Q0L PDBsum:3Q0M PDBsum:3Q0N PDBsum:3Q0O PDBsum:3Q0P
ProteinModelPortal:Q14671 SMR:Q14671 DIP:DIP-29082N IntAct:Q14671
MINT:MINT-1199500 STRING:Q14671 PhosphoSite:Q14671 DMDM:41688619
UCD-2DPAGE:Q14671 PaxDb:Q14671 PRIDE:Q14671 DNASU:9698
Ensembl:ENST00000257075 Ensembl:ENST00000440538 GeneID:9698
KEGG:hsa:9698 UCSC:uc001bsi.1 UCSC:uc001bsj.1 GeneCards:GC01M031405
HGNC:HGNC:14957 HPA:HPA027424 MIM:607204 neXtProt:NX_Q14671
PharmGKB:PA34042 PhylomeDB:Q14671 ChiTaRS:PUM1
EvolutionaryTrace:Q14671 GenomeRNAi:9698 NextBio:36439
ArrayExpress:Q14671 Bgee:Q14671 CleanEx:HS_PUM1
Genevestigator:Q14671 GermOnline:ENSG00000134644 Uniprot:Q14671
Length = 1186
Score = 829 (296.9 bits), Expect = 3.2e-85, Sum P(2) = 3.2e-85
Identities = 157/288 (54%), Positives = 213/288 (73%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 827 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 886
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 887 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 946
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 561
Q++++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 947 SDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYG 1006
Query: 562 CRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKL 621
CRVIQR+LEHC +Q I++E+ + L QDQYGNYV QHVLE G+ ++++I++++
Sbjct: 1007 CRVIQRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEI 1065
Query: 622 AGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLY 669
G ++ +SQHK+ASNVVEKC+ + ER +LI+E+ ++ + LY
Sbjct: 1066 RGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALY 1113
Score = 327 (120.2 bits), Expect = 9.6e-26, Sum P(2) = 9.6e-26
Identities = 77/256 (30%), Positives = 135/256 (52%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
QK L++ I G ++ ++ +G R IQ+ LE ++++ + +E+ H K + D GN+
Sbjct: 913 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNH 972
Query: 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH 515
V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL H
Sbjct: 973 VVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQH 1032
Query: 516 VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDE 575
+ V+DQ GN+VIQ +E E I++ RG V LS H + V+++ + H S
Sbjct: 1033 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRT 1092
Query: 576 QQGQCIVDEIL------ESA-FALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQM 628
++ ++DE+ SA + + +DQY NYV Q +++ + +R ++ K+ I +
Sbjct: 1093 ERA-VLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATL 1151
Query: 629 SQHKYASNVVEKCLEY 644
++ Y +++ K +Y
Sbjct: 1152 RKYTYGKHILAKLEKY 1167
Score = 252 (93.8 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 91/350 (26%), Positives = 155/350 (44%)
Query: 327 SPIASPVLPSSPVGSTSQLGLRHEMRLPQGLNR-----NTGIYSGWQGQRTFEGQ-RTFE 380
S +S PSS + S+S+L +P G +R Y Q R G F
Sbjct: 799 SSASSLFSPSSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNNRYPNLQ-LREIAGHIMEFS 857
Query: 381 DSKKHSFLEELKSSNAQKFE----LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSV 436
+ S +LK A E ++I + VD G+ IQ+ E S E+K+++
Sbjct: 858 QDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLAL 917
Query: 437 FKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKA 496
+ + H L ++G VIQK E DQ+ E+ +L G VL G V+QK
Sbjct: 918 AERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKC 977
Query: 497 LEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIE-CVPAEKIEFIISAFRGQVAT 554
+E ++ Q Q +++ G V G VIQ+ +E C+P + + I+
Sbjct: 978 IECVQ-PQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLP-ILEELHQHTEQ 1035
Query: 555 LSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYER 614
L YG VIQ VLEH E + + IV EI + L+Q ++ + V + + ER
Sbjct: 1036 LVQDQYGNYVIQHVLEHGRPEDKSK-IVAEIRGNVLVLSQHKFASNVVEKCVTHASRTER 1094
Query: 615 TQILSKLA-------GKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 657
++ ++ + M + +YA+ VV+K ++ + +R++++ +I
Sbjct: 1095 AVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKI 1144
Score = 48 (22.0 bits), Expect = 3.2e-85, Sum P(2) = 3.2e-85
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 159 SQYNVGGYALNSALFPPFVAGYPSQGP----VPMPFDATSGSSFNIRTTSVSTGEG 210
S YN G + +S+ P + PSQGP P P ++ GSS ++ ++ G G
Sbjct: 730 SFYN--GLSFSSSPGPVGMP-LPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNGSG 782
Score = 39 (18.8 bits), Expect = 2.8e-84, Sum P(2) = 2.8e-84
Identities = 36/175 (20%), Positives = 63/175 (36%)
Query: 129 MNNAHNAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
+N+A G + +G P YP P+ Y Q G +N+ A P P+
Sbjct: 533 VNSALAFGQGLAAGMPGYPVLAPAA---YYDQ--TGALVVNAGARNGLGAPVRLVAPAPV 587
Query: 189 PFDATSGSSFNIRTTSVSTGEGIPHIGSTQHQKFYGHQGLMLQSPFVDPLHMQYFQHPFG 248
++S + + + S + T + F + L Q P P
Sbjct: 588 II-SSSAAQAAVAAAAASANGAAGGLAGTTNGPF---RPLGTQQPQPQPQQQPNNNLASS 643
Query: 249 DAY-NASVQHRLASSGV-NGALADPSSKKEPIVAAYMGDQNLQSSLNG-GPSISN 300
Y N S+ SS + + A P++ ++ L S+L G G +++N
Sbjct: 644 SFYGNNSLNSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVAN 698
Score = 37 (18.1 bits), Expect = 4.6e-84, Sum P(2) = 4.6e-84
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 38 VSFSSSPCPDG 48
+SFSSSP P G
Sbjct: 735 LSFSSSPGPVG 745
>UNIPROTKB|H0YDK8 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000498419 Uniprot:H0YDK8
Length = 900
Score = 818 (293.0 bits), Expect = 1.3e-84, Sum P(2) = 1.3e-84
Identities = 157/290 (54%), Positives = 213/290 (73%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 539 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 598
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 599 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 658
Query: 502 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 559
Q+ +++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 659 SDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHP 718
Query: 560 YGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILS 619
YGCRVIQR+LEHC +Q I++E+ + L QDQYGNYV QHVLE G+ ++++I++
Sbjct: 719 YGCRVIQRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVA 777
Query: 620 KLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLY 669
++ G ++ +SQHK+ASNVVEKC+ + ER +LI+E+ ++ + LY
Sbjct: 778 EIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALY 827
Score = 323 (118.8 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 78/258 (30%), Positives = 136/258 (52%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV--SVFKEVLPHASKLMTDVFG 453
QK L++ I G ++ ++ +G R IQ+ LE ++++V + +E+ H K + D G
Sbjct: 625 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNG 684
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD 513
N+V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL
Sbjct: 685 NHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELH 744
Query: 514 GHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCS 573
H + V+DQ GN+VIQ +E E I++ RG V LS H + V+++ + H S
Sbjct: 745 QHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHAS 804
Query: 574 DEQQGQCIVDEIL------ESA-FALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIV 626
++ ++DE+ SA + + +DQY NYV Q +++ + +R ++ K+ I
Sbjct: 805 RTERA-VLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIA 863
Query: 627 QMSQHKYASNVVEKCLEY 644
+ ++ Y +++ K +Y
Sbjct: 864 TLRKYTYGKHILAKLEKY 881
Score = 232 (86.7 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 76/293 (25%), Positives = 135/293 (46%)
Query: 380 EDSKKHSFLEELKSSNAQKFE----LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVS 435
+D F++ LK A E ++I + VD G+ IQ+ E S E+K++
Sbjct: 570 QDQHGSRFIQ-LKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLA 628
Query: 436 VFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQR--KELAEKLVGQVLPLSLQMYGCRVI 493
+ + + H L ++G VIQK E DQ+ E+ +L G VL G V+
Sbjct: 629 LAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVV 688
Query: 494 QKALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIE-CVPAEKIEFIISAFRGQ 551
QK +E ++ Q Q +++ G V G VIQ+ +E C+P + + I+
Sbjct: 689 QKCIECVQ-PQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLP-ILEELHQH 746
Query: 552 VATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKS 611
L YG VIQ VLEH E + + IV EI + L+Q ++ + V + +
Sbjct: 747 TEQLVQDQYGNYVIQHVLEHGRPEDKSK-IVAEIRGNVLVLSQHKFASNVVEKCVTHASR 805
Query: 612 YERTQILSKLA-------GKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 657
ER ++ ++ + M + +YA+ VV+K ++ + +R++++ +I
Sbjct: 806 TERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKI 858
Score = 48 (22.0 bits), Expect = 1.3e-84, Sum P(2) = 1.3e-84
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 159 SQYNVGGYALNSALFPPFVAGYPSQGP----VPMPFDATSGSSFNIRTTSVSTGEG 210
S YN G + +S+ P + PSQGP P P ++ GSS ++ ++ G G
Sbjct: 442 SFYN--GLSFSSSPGPVGMP-LPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNGSG 494
Score = 39 (18.8 bits), Expect = 1.2e-83, Sum P(2) = 1.2e-83
Identities = 36/175 (20%), Positives = 63/175 (36%)
Query: 129 MNNAHNAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
+N+A G + +G P YP P+ Y Q G +N+ A P P+
Sbjct: 245 VNSALAFGQGLAAGMPGYPVLAPAA---YYDQ--TGALVVNAGARNGLGAPVRLVAPAPV 299
Query: 189 PFDATSGSSFNIRTTSVSTGEGIPHIGSTQHQKFYGHQGLMLQSPFVDPLHMQYFQHPFG 248
++S + + + S + T + F + L Q P P
Sbjct: 300 II-SSSAAQAAVAAAAASANGAAGGLAGTTNGPF---RPLGTQQPQPQPQQQPNNNLASS 355
Query: 249 DAY-NASVQHRLASSGV-NGALADPSSKKEPIVAAYMGDQNLQSSLNG-GPSISN 300
Y N S+ SS + + A P++ ++ L S+L G G +++N
Sbjct: 356 SFYGNNSLNSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVAN 410
Score = 37 (18.1 bits), Expect = 1.9e-83, Sum P(2) = 1.9e-83
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 38 VSFSSSPCPDG 48
+SFSSSP P G
Sbjct: 447 LSFSSSPGPVG 457
>UNIPROTKB|E7EWT3 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 IPI:IPI00939543 ProteinModelPortal:E7EWT3 SMR:E7EWT3
Ensembl:ENST00000423018 UCSC:uc010oga.1 ArrayExpress:E7EWT3
Bgee:E7EWT3 Uniprot:E7EWT3
Length = 1044
Score = 818 (293.0 bits), Expect = 1.3e-84, Sum P(2) = 1.3e-84
Identities = 157/290 (54%), Positives = 213/290 (73%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 683 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 742
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 743 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 802
Query: 502 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 559
Q+ +++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 803 SDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHP 862
Query: 560 YGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILS 619
YGCRVIQR+LEHC +Q I++E+ + L QDQYGNYV QHVLE G+ ++++I++
Sbjct: 863 YGCRVIQRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVA 921
Query: 620 KLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLY 669
++ G ++ +SQHK+ASNVVEKC+ + ER +LI+E+ ++ + LY
Sbjct: 922 EIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALY 971
Score = 323 (118.8 bits), Expect = 1.8e-25, Sum P(2) = 1.8e-25
Identities = 78/258 (30%), Positives = 136/258 (52%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV--SVFKEVLPHASKLMTDVFG 453
QK L++ I G ++ ++ +G R IQ+ LE ++++V + +E+ H K + D G
Sbjct: 769 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNG 828
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD 513
N+V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL
Sbjct: 829 NHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELH 888
Query: 514 GHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCS 573
H + V+DQ GN+VIQ +E E I++ RG V LS H + V+++ + H S
Sbjct: 889 QHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHAS 948
Query: 574 DEQQGQCIVDEIL------ESA-FALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIV 626
++ ++DE+ SA + + +DQY NYV Q +++ + +R ++ K+ I
Sbjct: 949 RTERA-VLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIA 1007
Query: 627 QMSQHKYASNVVEKCLEY 644
+ ++ Y +++ K +Y
Sbjct: 1008 TLRKYTYGKHILAKLEKY 1025
Score = 232 (86.7 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 76/293 (25%), Positives = 135/293 (46%)
Query: 380 EDSKKHSFLEELKSSNAQKFE----LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVS 435
+D F++ LK A E ++I + VD G+ IQ+ E S E+K++
Sbjct: 714 QDQHGSRFIQ-LKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLA 772
Query: 436 VFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQR--KELAEKLVGQVLPLSLQMYGCRVI 493
+ + + H L ++G VIQK E DQ+ E+ +L G VL G V+
Sbjct: 773 LAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVV 832
Query: 494 QKALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIE-CVPAEKIEFIISAFRGQ 551
QK +E ++ Q Q +++ G V G VIQ+ +E C+P + + I+
Sbjct: 833 QKCIECVQ-PQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLP-ILEELHQH 890
Query: 552 VATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKS 611
L YG VIQ VLEH E + + IV EI + L+Q ++ + V + +
Sbjct: 891 TEQLVQDQYGNYVIQHVLEHGRPEDKSK-IVAEIRGNVLVLSQHKFASNVVEKCVTHASR 949
Query: 612 YERTQILSKLA-------GKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 657
ER ++ ++ + M + +YA+ VV+K ++ + +R++++ +I
Sbjct: 950 TERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKI 1002
Score = 48 (22.0 bits), Expect = 1.3e-84, Sum P(2) = 1.3e-84
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 159 SQYNVGGYALNSALFPPFVAGYPSQGP----VPMPFDATSGSSFNIRTTSVSTGEG 210
S YN G + +S+ P + PSQGP P P ++ GSS ++ ++ G G
Sbjct: 586 SFYN--GLSFSSSPGPVGMP-LPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNGSG 638
Score = 37 (18.1 bits), Expect = 1.9e-83, Sum P(2) = 1.9e-83
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 38 VSFSSSPCPDG 48
+SFSSSP P G
Sbjct: 591 LSFSSSPGPVG 601
>ZFIN|ZDB-GENE-030131-2074 [details] [associations]
symbol:pum1 "pumilio homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 ZFIN:ZDB-GENE-030131-2074 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
GeneTree:ENSGT00390000017241 EMBL:CABZ01057427 EMBL:CABZ01093012
EMBL:CU207343 IPI:IPI00995409 Ensembl:ENSDART00000122308
ArrayExpress:E7FFV0 Bgee:E7FFV0 Uniprot:E7FFV0
Length = 1154
Score = 827 (296.2 bits), Expect = 2.2e-84, Sum P(2) = 2.2e-84
Identities = 162/291 (55%), Positives = 214/291 (73%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG ++EFS DQHGSRFIQ KLE S E+ VF E+L
Sbjct: 792 SGRSRLLEDFRNNRYPNLQLREIAGHVMEFSQDQHGSRFIQLKLERASPAERQLVFNEIL 851
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS DQ+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 852 QAAYQLMVDVFGNYVIQKFFEFGSLDQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 911
Query: 502 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQ-VATLSTH 558
Q+ +++V ELDGHV++CV+DQNGNHV+QKCIECV ++FII AF+GQ V LSTH
Sbjct: 912 SDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPHALQFIIDAFKGQQVFALSTH 971
Query: 559 PYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQIL 618
PYGCRVIQR+LEHC EQ I++EI + L QDQYGNYV QHVLE G++ ++++I+
Sbjct: 972 PYGCRVIQRILEHCLPEQT-LSILEEIHQHTEQLVQDQYGNYVIQHVLEHGRAEDKSKIV 1030
Query: 619 SKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLY 669
S++ G ++ +SQHK+ASNVVEKC+ + AER +LI+E+ ++ + LY
Sbjct: 1031 SEIRGNVLGLSQHKFASNVVEKCVTHSLRAERAMLIDEVCSMADGPHSALY 1081
Score = 315 (115.9 bits), Expect = 2.7e-23, Sum P(2) = 2.7e-23
Identities = 77/259 (29%), Positives = 135/259 (52%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV--SVFKEVLPHASKLMTDVFG 453
QK L++ I G ++ ++ +G R IQ+ LE ++++V + +E+ H K + D G
Sbjct: 878 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNG 937
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQ-VLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL 512
N+V+QK E P + + + GQ V LS YGCRVIQ+ LE Q ++ E+
Sbjct: 938 NHVVQKCIECVQPHALQFIIDAFKGQQVFALSTHPYGCRVIQRILEHCLPEQTLSILEEI 997
Query: 513 DGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHC 572
H + V+DQ GN+VIQ +E AE I+S RG V LS H + V+++ + H
Sbjct: 998 HQHTEQLVQDQYGNYVIQHVLEHGRAEDKSKIVSEIRGNVLGLSQHKFASNVVEKCVTHS 1057
Query: 573 SDEQQGQCIVDEILESA-------FALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKI 625
++ ++DE+ A + + +DQY NYV Q +++ + +R ++ K+ I
Sbjct: 1058 LRAERAM-LIDEVCSMADGPHSALYTMMKDQYANYVVQKMIDVAEPTQRKIVMHKIRPHI 1116
Query: 626 VQMSQHKYASNVVEKCLEY 644
+ ++ Y +++ K +Y
Sbjct: 1117 ATLRKYTYGKHILAKLEKY 1135
Score = 239 (89.2 bits), Expect = 2.7e-16, P = 2.7e-16
Identities = 125/548 (22%), Positives = 213/548 (38%)
Query: 135 AGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPMPFDATS 194
+G + + P Q SGA S Y G + +S F G G + F+A
Sbjct: 582 SGAFRALSSQQAPGQQGSGALGGSSFYGSGSPSSSSQSSSLFSQGSAQPGNTSLGFNANP 641
Query: 195 GSSFNIRTTSVSTGEGIPHIGST-----QHQKFYGHQGLMLQSPF-VDPL-HMQYFQHPF 247
SS + G G + ++ + G L ++ + P+ H ++
Sbjct: 642 TSSLGATLGAALGGFGTAEVANSSSSGSRRDSLTGSSDLYKRTASSLTPIGHGAFYNGLS 701
Query: 248 GDAYNASVQHRLASSGVNGALADPSSKKEPIVAAYMGDQNLQSSLN-GGPSISNPRKXXX 306
+ V L + G + +L P S + SSLN GG + + R
Sbjct: 702 FSSSPGPVGMPLPNQGPSHSLTPPPS---------LSTHGSSSSLNLGGLTNGSGRFISA 752
Query: 307 XXXXXXXXXXXXXXXXQFPTSPIASPVLPSSPVG-STSQLGLRHEMRLPQGLNRNTGIYS 365
F SP +S + PSS + S + RL + N Y
Sbjct: 753 APGAEAKYRSATTGSSLF--SP-SSQLFPSSRLRYGMSDVMPSGRSRLLEDFRNNR--YP 807
Query: 366 GWQGQRTFEGQ-RTFEDSKKHSFLEELKSSNAQKFE----LSDIAGRIVEFSVDQHGSRF 420
Q R G F + S +LK A E ++I + VD G+
Sbjct: 808 NLQ-LREIAGHVMEFSQDQHGSRFIQLKLERASPAERQLVFNEILQAAYQLMVDVFGNYV 866
Query: 421 IQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQR--KELAEKLVG 478
IQ+ E S ++K+++ + + H L ++G VIQK E DQ+ E+ +L G
Sbjct: 867 IQKFFEFGSLDQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDG 926
Query: 479 QVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH-VMRCVRDQNGNHVIQKCIE-CV 536
VL G V+QK +E ++ H ++ G V G VIQ+ +E C+
Sbjct: 927 HVLKCVKDQNGNHVVQKCIECVQPHALQFIIDAFKGQQVFALSTHPYGCRVIQRILEHCL 986
Query: 537 PAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQ 596
P + + I+ L YG VIQ VLEH E + + IV EI + L+Q +
Sbjct: 987 PEQTLS-ILEEIHQHTEQLVQDQYGNYVIQHVLEHGRAEDKSK-IVSEIRGNVLGLSQHK 1044
Query: 597 YGNYVTQHVLERGKSYERTQILSKLAGK-------IVQMSQHKYASNVVEKCLEYGDTAE 649
+ + V + + ER ++ ++ + M + +YA+ VV+K ++ + +
Sbjct: 1045 FASNVVEKCVTHSLRAERAMLIDEVCSMADGPHSALYTMMKDQYANYVVQKMIDVAEPTQ 1104
Query: 650 RELLIEEI 657
R++++ +I
Sbjct: 1105 RKIVMHKI 1112
Score = 37 (18.1 bits), Expect = 2.2e-84, Sum P(2) = 2.2e-84
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 38 VSFSSSPCPDG 48
+SFSSSP P G
Sbjct: 700 LSFSSSPGPVG 710
>UNIPROTKB|E9PCJ0 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 CTD:9698 EMBL:AL356320 EMBL:AL445235
RefSeq:NP_001018494.1 UniGene:Hs.281707 DNASU:9698 GeneID:9698
KEGG:hsa:9698 HGNC:HGNC:14957 ChiTaRS:PUM1 GenomeRNAi:9698
NextBio:36439 IPI:IPI00941275 ProteinModelPortal:E9PCJ0 SMR:E9PCJ0
Ensembl:ENST00000426105 UCSC:uc001bsh.1 ArrayExpress:E9PCJ0
Bgee:E9PCJ0 Uniprot:E9PCJ0
Length = 1188
Score = 818 (293.0 bits), Expect = 7.4e-84, Sum P(2) = 7.4e-84
Identities = 157/290 (54%), Positives = 213/290 (73%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 827 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 886
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 887 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 946
Query: 502 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 559
Q+ +++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 947 SDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHP 1006
Query: 560 YGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILS 619
YGCRVIQR+LEHC +Q I++E+ + L QDQYGNYV QHVLE G+ ++++I++
Sbjct: 1007 YGCRVIQRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVA 1065
Query: 620 KLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLY 669
++ G ++ +SQHK+ASNVVEKC+ + ER +LI+E+ ++ + LY
Sbjct: 1066 EIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALY 1115
Score = 323 (118.8 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
Identities = 78/258 (30%), Positives = 136/258 (52%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV--SVFKEVLPHASKLMTDVFG 453
QK L++ I G ++ ++ +G R IQ+ LE ++++V + +E+ H K + D G
Sbjct: 913 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNG 972
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD 513
N+V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL
Sbjct: 973 NHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELH 1032
Query: 514 GHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCS 573
H + V+DQ GN+VIQ +E E I++ RG V LS H + V+++ + H S
Sbjct: 1033 QHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHAS 1092
Query: 574 DEQQGQCIVDEIL------ESA-FALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIV 626
++ ++DE+ SA + + +DQY NYV Q +++ + +R ++ K+ I
Sbjct: 1093 RTERA-VLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIA 1151
Query: 627 QMSQHKYASNVVEKCLEY 644
+ ++ Y +++ K +Y
Sbjct: 1152 TLRKYTYGKHILAKLEKY 1169
Score = 232 (86.7 bits), Expect = 2.9e-15, Sum P(2) = 2.9e-15
Identities = 76/293 (25%), Positives = 135/293 (46%)
Query: 380 EDSKKHSFLEELKSSNAQKFE----LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVS 435
+D F++ LK A E ++I + VD G+ IQ+ E S E+K++
Sbjct: 858 QDQHGSRFIQ-LKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLA 916
Query: 436 VFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQR--KELAEKLVGQVLPLSLQMYGCRVI 493
+ + + H L ++G VIQK E DQ+ E+ +L G VL G V+
Sbjct: 917 LAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVV 976
Query: 494 QKALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIE-CVPAEKIEFIISAFRGQ 551
QK +E ++ Q Q +++ G V G VIQ+ +E C+P + + I+
Sbjct: 977 QKCIECVQ-PQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLP-ILEELHQH 1034
Query: 552 VATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKS 611
L YG VIQ VLEH E + + IV EI + L+Q ++ + V + +
Sbjct: 1035 TEQLVQDQYGNYVIQHVLEHGRPEDKSK-IVAEIRGNVLVLSQHKFASNVVEKCVTHASR 1093
Query: 612 YERTQILSKLA-------GKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 657
ER ++ ++ + M + +YA+ VV+K ++ + +R++++ +I
Sbjct: 1094 TERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKI 1146
Score = 48 (22.0 bits), Expect = 7.4e-84, Sum P(2) = 7.4e-84
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 159 SQYNVGGYALNSALFPPFVAGYPSQGP----VPMPFDATSGSSFNIRTTSVSTGEG 210
S YN G + +S+ P + PSQGP P P ++ GSS ++ ++ G G
Sbjct: 730 SFYN--GLSFSSSPGPVGMP-LPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNGSG 782
Score = 39 (18.8 bits), Expect = 6.6e-83, Sum P(2) = 6.6e-83
Identities = 36/175 (20%), Positives = 63/175 (36%)
Query: 129 MNNAHNAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
+N+A G + +G P YP P+ Y Q G +N+ A P P+
Sbjct: 533 VNSALAFGQGLAAGMPGYPVLAPAA---YYDQ--TGALVVNAGARNGLGAPVRLVAPAPV 587
Query: 189 PFDATSGSSFNIRTTSVSTGEGIPHIGSTQHQKFYGHQGLMLQSPFVDPLHMQYFQHPFG 248
++S + + + S + T + F + L Q P P
Sbjct: 588 II-SSSAAQAAVAAAAASANGAAGGLAGTTNGPF---RPLGTQQPQPQPQQQPNNNLASS 643
Query: 249 DAY-NASVQHRLASSGV-NGALADPSSKKEPIVAAYMGDQNLQSSLNG-GPSISN 300
Y N S+ SS + + A P++ ++ L S+L G G +++N
Sbjct: 644 SFYGNNSLNSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVAN 698
Score = 37 (18.1 bits), Expect = 1.1e-82, Sum P(2) = 1.1e-82
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 38 VSFSSSPCPDG 48
+SFSSSP P G
Sbjct: 735 LSFSSSPGPVG 745
>UNIPROTKB|Q5T1Z4 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
EMBL:CH471059 GO:GO:0003723 HOGENOM:HOG000238461 HOVERGEN:HBG049462
OrthoDB:EOG4P8FHP EMBL:AL356320 EMBL:AL445235 UniGene:Hs.281707
HGNC:HGNC:14957 ChiTaRS:PUM1 IPI:IPI00646054 SMR:Q5T1Z4
STRING:Q5T1Z4 Ensembl:ENST00000373747 UCSC:uc001bsf.1
Uniprot:Q5T1Z4
Length = 1189
Score = 818 (293.0 bits), Expect = 7.6e-84, Sum P(2) = 7.6e-84
Identities = 157/290 (54%), Positives = 213/290 (73%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 828 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 887
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 888 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 947
Query: 502 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 559
Q+ +++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 948 SDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHP 1007
Query: 560 YGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILS 619
YGCRVIQR+LEHC +Q I++E+ + L QDQYGNYV QHVLE G+ ++++I++
Sbjct: 1008 YGCRVIQRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVA 1066
Query: 620 KLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLY 669
++ G ++ +SQHK+ASNVVEKC+ + ER +LI+E+ ++ + LY
Sbjct: 1067 EIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALY 1116
Score = 323 (118.8 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
Identities = 78/258 (30%), Positives = 136/258 (52%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV--SVFKEVLPHASKLMTDVFG 453
QK L++ I G ++ ++ +G R IQ+ LE ++++V + +E+ H K + D G
Sbjct: 914 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNG 973
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD 513
N+V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL
Sbjct: 974 NHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELH 1033
Query: 514 GHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCS 573
H + V+DQ GN+VIQ +E E I++ RG V LS H + V+++ + H S
Sbjct: 1034 QHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHAS 1093
Query: 574 DEQQGQCIVDEIL------ESA-FALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIV 626
++ ++DE+ SA + + +DQY NYV Q +++ + +R ++ K+ I
Sbjct: 1094 RTERA-VLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIA 1152
Query: 627 QMSQHKYASNVVEKCLEY 644
+ ++ Y +++ K +Y
Sbjct: 1153 TLRKYTYGKHILAKLEKY 1170
Score = 232 (86.7 bits), Expect = 2.9e-15, Sum P(2) = 2.9e-15
Identities = 76/293 (25%), Positives = 135/293 (46%)
Query: 380 EDSKKHSFLEELKSSNAQKFE----LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVS 435
+D F++ LK A E ++I + VD G+ IQ+ E S E+K++
Sbjct: 859 QDQHGSRFIQ-LKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLA 917
Query: 436 VFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQR--KELAEKLVGQVLPLSLQMYGCRVI 493
+ + + H L ++G VIQK E DQ+ E+ +L G VL G V+
Sbjct: 918 LAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVV 977
Query: 494 QKALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIE-CVPAEKIEFIISAFRGQ 551
QK +E ++ Q Q +++ G V G VIQ+ +E C+P + + I+
Sbjct: 978 QKCIECVQ-PQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLP-ILEELHQH 1035
Query: 552 VATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKS 611
L YG VIQ VLEH E + + IV EI + L+Q ++ + V + +
Sbjct: 1036 TEQLVQDQYGNYVIQHVLEHGRPEDKSK-IVAEIRGNVLVLSQHKFASNVVEKCVTHASR 1094
Query: 612 YERTQILSKLA-------GKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 657
ER ++ ++ + M + +YA+ VV+K ++ + +R++++ +I
Sbjct: 1095 TERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKI 1147
Score = 48 (22.0 bits), Expect = 7.6e-84, Sum P(2) = 7.6e-84
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 159 SQYNVGGYALNSALFPPFVAGYPSQGP----VPMPFDATSGSSFNIRTTSVSTGEG 210
S YN G + +S+ P + PSQGP P P ++ GSS ++ ++ G G
Sbjct: 731 SFYN--GLSFSSSPGPVGMP-LPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNGSG 783
Score = 39 (18.8 bits), Expect = 6.8e-83, Sum P(2) = 6.8e-83
Identities = 36/175 (20%), Positives = 63/175 (36%)
Query: 129 MNNAHNAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
+N+A G + +G P YP P+ Y Q G +N+ A P P+
Sbjct: 534 VNSALAFGQGLAAGMPGYPVLAPAA---YYDQ--TGALVVNAGARNGLGAPVRLVAPAPV 588
Query: 189 PFDATSGSSFNIRTTSVSTGEGIPHIGSTQHQKFYGHQGLMLQSPFVDPLHMQYFQHPFG 248
++S + + + S + T + F + L Q P P
Sbjct: 589 II-SSSAAQAAVAAAAASANGAAGGLAGTTNGPF---RPLGTQQPQPQPQQQPNNNLASS 644
Query: 249 DAY-NASVQHRLASSGV-NGALADPSSKKEPIVAAYMGDQNLQSSLNG-GPSISN 300
Y N S+ SS + + A P++ ++ L S+L G G +++N
Sbjct: 645 SFYGNNSLNSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVAN 699
Score = 37 (18.1 bits), Expect = 1.1e-82, Sum P(2) = 1.1e-82
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 38 VSFSSSPCPDG 48
+SFSSSP P G
Sbjct: 736 LSFSSSPGPVG 746
>UNIPROTKB|Q5T1Z8 [details] [associations]
symbol:PUM1 "Pumilio homolog 1 (Drosophila), isoform CRA_c"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 EMBL:CH471059 GO:GO:0003723 HOGENOM:HOG000238461
HOVERGEN:HBG049462 OMA:RHVVGVK EMBL:AL356320 EMBL:AL445235
UniGene:Hs.281707 HGNC:HGNC:14957 ChiTaRS:PUM1 IPI:IPI00032355
SMR:Q5T1Z8 STRING:Q5T1Z8 Ensembl:ENST00000373741 UCSC:uc001bsk.1
Uniprot:Q5T1Z8
Length = 1224
Score = 818 (293.0 bits), Expect = 1.6e-83, Sum P(2) = 1.6e-83
Identities = 157/290 (54%), Positives = 213/290 (73%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 863 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 922
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 923 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 982
Query: 502 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 559
Q+ +++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 983 SDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHP 1042
Query: 560 YGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILS 619
YGCRVIQR+LEHC +Q I++E+ + L QDQYGNYV QHVLE G+ ++++I++
Sbjct: 1043 YGCRVIQRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVA 1101
Query: 620 KLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLY 669
++ G ++ +SQHK+ASNVVEKC+ + ER +LI+E+ ++ + LY
Sbjct: 1102 EIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALY 1151
Score = 323 (118.8 bits), Expect = 3.0e-25, Sum P(2) = 3.0e-25
Identities = 78/258 (30%), Positives = 136/258 (52%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV--SVFKEVLPHASKLMTDVFG 453
QK L++ I G ++ ++ +G R IQ+ LE ++++V + +E+ H K + D G
Sbjct: 949 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNG 1008
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD 513
N+V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL
Sbjct: 1009 NHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELH 1068
Query: 514 GHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCS 573
H + V+DQ GN+VIQ +E E I++ RG V LS H + V+++ + H S
Sbjct: 1069 QHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHAS 1128
Query: 574 DEQQGQCIVDEIL------ESA-FALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIV 626
++ ++DE+ SA + + +DQY NYV Q +++ + +R ++ K+ I
Sbjct: 1129 RTERA-VLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIA 1187
Query: 627 QMSQHKYASNVVEKCLEY 644
+ ++ Y +++ K +Y
Sbjct: 1188 TLRKYTYGKHILAKLEKY 1205
Score = 232 (86.7 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
Identities = 76/293 (25%), Positives = 135/293 (46%)
Query: 380 EDSKKHSFLEELKSSNAQKFE----LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVS 435
+D F++ LK A E ++I + VD G+ IQ+ E S E+K++
Sbjct: 894 QDQHGSRFIQ-LKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLA 952
Query: 436 VFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQR--KELAEKLVGQVLPLSLQMYGCRVI 493
+ + + H L ++G VIQK E DQ+ E+ +L G VL G V+
Sbjct: 953 LAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVV 1012
Query: 494 QKALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIE-CVPAEKIEFIISAFRGQ 551
QK +E ++ Q Q +++ G V G VIQ+ +E C+P + + I+
Sbjct: 1013 QKCIECVQ-PQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLP-ILEELHQH 1070
Query: 552 VATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKS 611
L YG VIQ VLEH E + + IV EI + L+Q ++ + V + +
Sbjct: 1071 TEQLVQDQYGNYVIQHVLEHGRPEDKSK-IVAEIRGNVLVLSQHKFASNVVEKCVTHASR 1129
Query: 612 YERTQILSKLA-------GKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 657
ER ++ ++ + M + +YA+ VV+K ++ + +R++++ +I
Sbjct: 1130 TERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKI 1182
Score = 48 (22.0 bits), Expect = 1.6e-83, Sum P(2) = 1.6e-83
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 159 SQYNVGGYALNSALFPPFVAGYPSQGP----VPMPFDATSGSSFNIRTTSVSTGEG 210
S YN G + +S+ P + PSQGP P P ++ GSS ++ ++ G G
Sbjct: 766 SFYN--GLSFSSSPGPVGMP-LPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNGSG 818
Score = 39 (18.8 bits), Expect = 1.4e-82, Sum P(2) = 1.4e-82
Identities = 36/175 (20%), Positives = 63/175 (36%)
Query: 129 MNNAHNAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
+N+A G + +G P YP P+ Y Q G +N+ A P P+
Sbjct: 569 VNSALAFGQGLAAGMPGYPVLAPAA---YYDQ--TGALVVNAGARNGLGAPVRLVAPAPV 623
Query: 189 PFDATSGSSFNIRTTSVSTGEGIPHIGSTQHQKFYGHQGLMLQSPFVDPLHMQYFQHPFG 248
++S + + + S + T + F + L Q P P
Sbjct: 624 II-SSSAAQAAVAAAAASANGAAGGLAGTTNGPF---RPLGTQQPQPQPQQQPNNNLASS 679
Query: 249 DAY-NASVQHRLASSGV-NGALADPSSKKEPIVAAYMGDQNLQSSLNG-GPSISN 300
Y N S+ SS + + A P++ ++ L S+L G G +++N
Sbjct: 680 SFYGNNSLNSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVAN 734
Score = 37 (18.1 bits), Expect = 2.3e-82, Sum P(2) = 2.3e-82
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 38 VSFSSSPCPDG 48
+SFSSSP P G
Sbjct: 771 LSFSSSPGPVG 781
>UNIPROTKB|Q2VB19 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005737
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 eggNOG:COG5099 GeneTree:ENSGT00390000017241
HSSP:Q14671 EMBL:DQ275191 EMBL:AJ851393 IPI:IPI00581936
IPI:IPI00682137 RefSeq:NP_001012858.1 UniGene:Gga.22920
ProteinModelPortal:Q2VB19 SMR:Q2VB19 Ensembl:ENSGALT00000000834
Ensembl:ENSGALT00000035201 GeneID:419554 KEGG:gga:419554 CTD:9698
HOGENOM:HOG000238461 HOVERGEN:HBG049462 InParanoid:Q2VB19
OMA:RHVVGVK OrthoDB:EOG4P8FHP NextBio:20822590 Uniprot:Q2VB19
Length = 1189
Score = 821 (294.1 bits), Expect = 3.0e-83, Sum P(2) = 3.0e-83
Identities = 158/290 (54%), Positives = 213/290 (73%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 828 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 887
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 888 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 947
Query: 502 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 559
Q+ +++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 948 PDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHP 1007
Query: 560 YGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILS 619
YGCRVIQR+LEHC EQ I++E+ + L QDQYGNYV QHVLE G+ ++++I++
Sbjct: 1008 YGCRVIQRILEHCLPEQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVA 1066
Query: 620 KLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLY 669
++ G ++ +SQHK+ASNVVEKC+ + ER +LI+E+ ++ + LY
Sbjct: 1067 EIRGNVLVLSQHKFASNVVEKCVTHASRTERAMLIDEVCTMNDGPHSALY 1116
Score = 324 (119.1 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 78/258 (30%), Positives = 135/258 (52%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV--SVFKEVLPHASKLMTDVFG 453
QK L++ I G ++ ++ +G R IQ+ LE +++V + +E+ H K + D G
Sbjct: 914 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPPDQQVINEMVRELDGHVLKCVKDQNG 973
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD 513
N+V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL
Sbjct: 974 NHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPEQTLPILEELH 1033
Query: 514 GHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCS 573
H + V+DQ GN+VIQ +E E I++ RG V LS H + V+++ + H S
Sbjct: 1034 QHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHAS 1093
Query: 574 DEQQGQCIVDEIL------ESA-FALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIV 626
++ ++DE+ SA + + +DQY NYV Q +++ + +R ++ K+ I
Sbjct: 1094 RTERAM-LIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKIRPHIA 1152
Query: 627 QMSQHKYASNVVEKCLEY 644
+ ++ Y +++ K +Y
Sbjct: 1153 TLRKYTYGKHILAKLEKY 1170
Score = 253 (94.1 bits), Expect = 8.6e-18, P = 8.6e-18
Identities = 129/544 (23%), Positives = 212/544 (38%)
Query: 136 GTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPMPFDATS- 194
GT P P P QP+ S Y + NS F G + F ++S
Sbjct: 625 GTQQPQ--P-QPQQQPTNNLASSSFYGNNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSS 681
Query: 195 -GSSFNIRTTSVSTGEGIPHIGS-TQHQKFYGHQGLMLQ-SPFVDPLHMQYFQHPFGDAY 251
G++ T + GS ++ G L + S + P+ ++ +
Sbjct: 682 LGATLGSALGGFGTAVANSNTGSGSRRDSLTGSSDLYKRTSSSLTPIGHSFYNGLGFSSS 741
Query: 252 NASVQHRLASSGVNGALADPSSKKEPIVAAYMGDQNLQSSLN-GGPSISNPRKXXXXXXX 310
V L S G + P S + SSLN GG + + R
Sbjct: 742 PGPVGMPLPSQGPGHSQTPPPS---------LSSHGSSSSLNLGGLTNGSGRYISAAPGA 792
Query: 311 XXXXXXXXXXXXQFPTSPIASPVLPSSPVG-STSQLGLRHEMRLPQGLNRNTGIYSGWQG 369
F SP +S + PSS + S + RL + N Y Q
Sbjct: 793 EAKYRSASSASSLF--SP-SSTLFPSSRLRYGMSDVMPSGRSRLLEDFRNNR--YPNLQ- 846
Query: 370 QRTFEGQ-RTFEDSKKHSFLEELKSSNAQKFE----LSDIAGRIVEFSVDQHGSRFIQQK 424
R G F + S +LK A E ++I + VD G+ IQ+
Sbjct: 847 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 906
Query: 425 LEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQR--KELAEKLVGQVLP 482
E S E+K+++ + + H L ++G VIQK E PDQ+ E+ +L G VL
Sbjct: 907 FEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPPDQQVINEMVRELDGHVLK 966
Query: 483 LSLQMYGCRVIQKALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIE-CVPAEK 540
G V+QK +E ++ Q Q +++ G V G VIQ+ +E C+P +
Sbjct: 967 CVKDQNGNHVVQKCIECVQ-PQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPEQT 1025
Query: 541 IEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNY 600
+ I+ L YG VIQ VLEH E + + IV EI + L+Q ++ +
Sbjct: 1026 LP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSK-IVAEIRGNVLVLSQHKFASN 1083
Query: 601 VTQHVLERGKSYERTQILSKLA-------GKIVQMSQHKYASNVVEKCLEYGDTAERELL 653
V + + ER ++ ++ + M + +YA+ VV+K ++ + A+R+++
Sbjct: 1084 VVEKCVTHASRTERAMLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIV 1143
Query: 654 IEEI 657
+ +I
Sbjct: 1144 MHKI 1147
Score = 39 (18.8 bits), Expect = 3.0e-83, Sum P(2) = 3.0e-83
Identities = 36/175 (20%), Positives = 63/175 (36%)
Query: 129 MNNAHNAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
+N+A G + +G P YP P+ Y Q G +N+ A P P+
Sbjct: 534 VNSALAFGQGLAAGMPGYPVLAPAA---YYDQ--TGALVVNAGARNGLGAPVRLVAPAPV 588
Query: 189 PFDATSGSSFNIRTTSVSTGEGIPHIGSTQHQKFYGHQGLMLQSPFVDPLHMQYFQHPFG 248
++S + + + S + T + F + L Q P P
Sbjct: 589 II-SSSAAQAAVAAAAASANGAAGGLAGTTNGPF---RPLGTQQPQPQPQQQPTNNLASS 644
Query: 249 DAY-NASVQHRLASSGV-NGALADPSSKKEPIVAAYMGDQNLQSSLNG-GPSISN 300
Y N S+ SS + + A P++ ++ L S+L G G +++N
Sbjct: 645 SFYGNNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVAN 699
>UNIPROTKB|F6XHY4 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 GeneTree:ENSGT00390000017241
OMA:RHVVGVK Ensembl:ENSCAFT00000017823 EMBL:AAEX03001673
Uniprot:F6XHY4
Length = 1162
Score = 818 (293.0 bits), Expect = 4.9e-83, Sum P(2) = 4.9e-83
Identities = 157/290 (54%), Positives = 213/290 (73%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 801 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 860
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 861 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 920
Query: 502 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 559
Q+ +++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 921 SDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHP 980
Query: 560 YGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILS 619
YGCRVIQR+LEHC +Q I++E+ + L QDQYGNYV QHVLE G+ ++++I++
Sbjct: 981 YGCRVIQRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVA 1039
Query: 620 KLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLY 669
++ G ++ +SQHK+ASNVVEKC+ + ER +LI+E+ ++ + LY
Sbjct: 1040 EIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALY 1089
Score = 324 (119.1 bits), Expect = 2.7e-24, Sum P(2) = 2.7e-24
Identities = 78/258 (30%), Positives = 136/258 (52%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV--SVFKEVLPHASKLMTDVFG 453
QK L++ I G ++ ++ +G R IQ+ LE ++++V + +E+ H K + D G
Sbjct: 887 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNG 946
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD 513
N+V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL
Sbjct: 947 NHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELH 1006
Query: 514 GHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCS 573
H + V+DQ GN+VIQ +E E I++ RG V LS H + V+++ + H S
Sbjct: 1007 QHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHAS 1066
Query: 574 DEQQGQCIVDEIL------ESA-FALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIV 626
++ ++DE+ SA + + +DQY NYV Q +++ + +R ++ K+ I
Sbjct: 1067 RTERA-VLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKIRPHIA 1125
Query: 627 QMSQHKYASNVVEKCLEY 644
+ ++ Y +++ K +Y
Sbjct: 1126 TLRKYTYGKHILAKLEKY 1143
Score = 249 (92.7 bits), Expect = 2.3e-17, P = 2.3e-17
Identities = 130/550 (23%), Positives = 215/550 (39%)
Query: 130 NNAHNAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPMP 189
++A AGT P P P QPS + S Y + NS F G +
Sbjct: 592 SSAAQAGTQQPQ--P-QPQQQPSNSLASSSFYGNNSLSSNSQSSSLFSQGSAQPANTSLG 648
Query: 190 FDATS--GSSFNIRTTSVSTGEGIPHIGS-TQHQKFYGHQGLMLQ-SPFVDPLHMQYFQH 245
F ++S G++ T + GS ++ G L + S + P+ ++
Sbjct: 649 FGSSSSLGATLGSALGGFGTAVANSNTGSGSRRDSLTGSSDLYKRTSSSLTPIGHSFYNG 708
Query: 246 PFGDAYNASVQHRLASSGVNGALADPSSKKEPIVAAYMGDQNLQSSLN-GGPSISNPRKX 304
+ V L S G + P S + SSLN GG + + R
Sbjct: 709 LSFSSSPGPVGMPLPSQGPGHSQTPPPS---------LSSHGSSSSLNLGGLTNGSGRYI 759
Query: 305 XXXXXXXXXXXXXXXXXXQFPTSPIASPVLPSSPVG-STSQLGLRHEMRLPQGLNRNTGI 363
F SP +S + SS + S + RL + N
Sbjct: 760 SAAPGAEAKYRSASSASSLF--SP-SSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNNR-- 814
Query: 364 YSGWQGQRTFEGQ-RTFEDSKKHSFLEELKSSNAQKFE----LSDIAGRIVEFSVDQHGS 418
Y Q R G F + S +LK A E ++I + VD G+
Sbjct: 815 YPNLQ-LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGN 873
Query: 419 RFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQR--KELAEKL 476
IQ+ E S E+K+++ + + H L ++G VIQK E DQ+ E+ +L
Sbjct: 874 YVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVREL 933
Query: 477 VGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIE- 534
G VL G V+QK +E ++ Q Q +++ G V G VIQ+ +E
Sbjct: 934 DGHVLKCVKDQNGNHVVQKCIECVQ-PQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEH 992
Query: 535 CVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQ 594
C+P + + I+ L YG VIQ VLEH E + + IV EI + L+Q
Sbjct: 993 CLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSK-IVAEIRGNVLVLSQ 1050
Query: 595 DQYGNYVTQHVLERGKSYERTQILSKLA-------GKIVQMSQHKYASNVVEKCLEYGDT 647
++ + V + + ER ++ ++ + M + +YA+ VV+K ++ +
Sbjct: 1051 HKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEP 1110
Query: 648 AERELLIEEI 657
A+R++++ +I
Sbjct: 1111 AQRKIVMHKI 1120
Score = 37 (18.1 bits), Expect = 4.9e-83, Sum P(2) = 4.9e-83
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 38 VSFSSSPCPDG 48
+SFSSSP P G
Sbjct: 709 LSFSSSPGPVG 719
>UNIPROTKB|H0YEH2 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000525843 Uniprot:H0YEH2
Length = 1125
Score = 829 (296.9 bits), Expect = 1.0e-82, P = 1.0e-82
Identities = 157/288 (54%), Positives = 213/288 (73%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 766 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 825
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 826 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 885
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 561
Q++++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 886 SDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYG 945
Query: 562 CRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKL 621
CRVIQR+LEHC +Q I++E+ + L QDQYGNYV QHVLE G+ ++++I++++
Sbjct: 946 CRVIQRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEI 1004
Query: 622 AGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLY 669
G ++ +SQHK+ASNVVEKC+ + ER +LI+E+ ++ + LY
Sbjct: 1005 RGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALY 1052
Score = 327 (120.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 77/256 (30%), Positives = 135/256 (52%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
QK L++ I G ++ ++ +G R IQ+ LE ++++ + +E+ H K + D GN+
Sbjct: 852 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNH 911
Query: 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH 515
V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL H
Sbjct: 912 VVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQH 971
Query: 516 VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDE 575
+ V+DQ GN+VIQ +E E I++ RG V LS H + V+++ + H S
Sbjct: 972 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRT 1031
Query: 576 QQGQCIVDEIL------ESA-FALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQM 628
++ ++DE+ SA + + +DQY NYV Q +++ + +R ++ K+ I +
Sbjct: 1032 ERA-VLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATL 1090
Query: 629 SQHKYASNVVEKCLEY 644
++ Y +++ K +Y
Sbjct: 1091 RKYTYGKHILAKLEKY 1106
Score = 252 (93.8 bits), Expect = 1.0e-17, P = 1.0e-17
Identities = 91/350 (26%), Positives = 155/350 (44%)
Query: 327 SPIASPVLPSSPVGSTSQLGLRHEMRLPQGLNR-----NTGIYSGWQGQRTFEGQ-RTFE 380
S +S PSS + S+S+L +P G +R Y Q R G F
Sbjct: 738 SSASSLFSPSSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNNRYPNLQ-LREIAGHIMEFS 796
Query: 381 DSKKHSFLEELKSSNAQKFE----LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSV 436
+ S +LK A E ++I + VD G+ IQ+ E S E+K+++
Sbjct: 797 QDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLAL 856
Query: 437 FKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKA 496
+ + H L ++G VIQK E DQ+ E+ +L G VL G V+QK
Sbjct: 857 AERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKC 916
Query: 497 LEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIE-CVPAEKIEFIISAFRGQVAT 554
+E ++ Q Q +++ G V G VIQ+ +E C+P + + I+
Sbjct: 917 IECVQ-PQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLP-ILEELHQHTEQ 974
Query: 555 LSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYER 614
L YG VIQ VLEH E + + IV EI + L+Q ++ + V + + ER
Sbjct: 975 LVQDQYGNYVIQHVLEHGRPEDKSK-IVAEIRGNVLVLSQHKFASNVVEKCVTHASRTER 1033
Query: 615 TQILSKLA-------GKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 657
++ ++ + M + +YA+ VV+K ++ + +R++++ +I
Sbjct: 1034 AVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKI 1083
>UNIPROTKB|E2QVA9 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 CTD:9698 RefSeq:XP_852168.1
Ensembl:ENSCAFT00000017823 GeneID:478158 KEGG:cfa:478158
NextBio:20853526 Uniprot:E2QVA9
Length = 1224
Score = 818 (293.0 bits), Expect = 1.4e-82, Sum P(2) = 1.4e-82
Identities = 157/290 (54%), Positives = 213/290 (73%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 863 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 922
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 923 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 982
Query: 502 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 559
Q+ +++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 983 SDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHP 1042
Query: 560 YGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILS 619
YGCRVIQR+LEHC +Q I++E+ + L QDQYGNYV QHVLE G+ ++++I++
Sbjct: 1043 YGCRVIQRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVA 1101
Query: 620 KLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLY 669
++ G ++ +SQHK+ASNVVEKC+ + ER +LI+E+ ++ + LY
Sbjct: 1102 EIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALY 1151
Score = 324 (119.1 bits), Expect = 2.0e-24, Sum P(2) = 2.0e-24
Identities = 78/258 (30%), Positives = 136/258 (52%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV--SVFKEVLPHASKLMTDVFG 453
QK L++ I G ++ ++ +G R IQ+ LE ++++V + +E+ H K + D G
Sbjct: 949 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNG 1008
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD 513
N+V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL
Sbjct: 1009 NHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELH 1068
Query: 514 GHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCS 573
H + V+DQ GN+VIQ +E E I++ RG V LS H + V+++ + H S
Sbjct: 1069 QHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHAS 1128
Query: 574 DEQQGQCIVDEIL------ESA-FALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIV 626
++ ++DE+ SA + + +DQY NYV Q +++ + +R ++ K+ I
Sbjct: 1129 RTERA-VLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKIRPHIA 1187
Query: 627 QMSQHKYASNVVEKCLEY 644
+ ++ Y +++ K +Y
Sbjct: 1188 TLRKYTYGKHILAKLEKY 1205
Score = 241 (89.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 128/544 (23%), Positives = 211/544 (38%)
Query: 136 GTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPMPFDATS- 194
GT P P P QPS + S Y + NS F G + F ++S
Sbjct: 660 GTQQPQ--P-QPQQQPSNSLASSSFYGNNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSS 716
Query: 195 -GSSFNIRTTSVSTGEGIPHIGS-TQHQKFYGHQGLMLQ-SPFVDPLHMQYFQHPFGDAY 251
G++ T + GS ++ G L + S + P+ ++ +
Sbjct: 717 LGATLGSALGGFGTAVANSNTGSGSRRDSLTGSSDLYKRTSSSLTPIGHSFYNGLSFSSS 776
Query: 252 NASVQHRLASSGVNGALADPSSKKEPIVAAYMGDQNLQSSLN-GGPSISNPRKXXXXXXX 310
V L S G + P S + SSLN GG + + R
Sbjct: 777 PGPVGMPLPSQGPGHSQTPPPS---------LSSHGSSSSLNLGGLTNGSGRYISAAPGA 827
Query: 311 XXXXXXXXXXXXQFPTSPIASPVLPSSPVG-STSQLGLRHEMRLPQGLNRNTGIYSGWQG 369
F SP +S + SS + S + RL + N Y Q
Sbjct: 828 EAKYRSASSASSLF--SP-SSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNNR--YPNLQ- 881
Query: 370 QRTFEGQ-RTFEDSKKHSFLEELKSSNAQKFE----LSDIAGRIVEFSVDQHGSRFIQQK 424
R G F + S +LK A E ++I + VD G+ IQ+
Sbjct: 882 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 941
Query: 425 LEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQR--KELAEKLVGQVLP 482
E S E+K+++ + + H L ++G VIQK E DQ+ E+ +L G VL
Sbjct: 942 FEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLK 1001
Query: 483 LSLQMYGCRVIQKALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIE-CVPAEK 540
G V+QK +E ++ Q Q +++ G V G VIQ+ +E C+P +
Sbjct: 1002 CVKDQNGNHVVQKCIECVQ-PQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQT 1060
Query: 541 IEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNY 600
+ I+ L YG VIQ VLEH E + + IV EI + L+Q ++ +
Sbjct: 1061 LP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSK-IVAEIRGNVLVLSQHKFASN 1118
Query: 601 VTQHVLERGKSYERTQILSKLA-------GKIVQMSQHKYASNVVEKCLEYGDTAERELL 653
V + + ER ++ ++ + M + +YA+ VV+K ++ + A+R+++
Sbjct: 1119 VVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIV 1178
Query: 654 IEEI 657
+ +I
Sbjct: 1179 MHKI 1182
Score = 39 (18.8 bits), Expect = 1.4e-82, Sum P(2) = 1.4e-82
Identities = 36/175 (20%), Positives = 63/175 (36%)
Query: 129 MNNAHNAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
+N+A G + +G P YP P+ Y Q G +N+ A P P+
Sbjct: 569 VNSALAFGQGLAAGMPGYPVLAPAA---YYDQ--TGALVVNAGARNGLGAPVRLVAPAPV 623
Query: 189 PFDATSGSSFNIRTTSVSTGEGIPHIGSTQHQKFYGHQGLMLQSPFVDPLHMQYFQHPFG 248
++S + + + S + T + F + L Q P P
Sbjct: 624 II-SSSAAQAAVAAAAASANGAAGGLAGTTNGPF---RPLGTQQPQPQPQQQPSNSLASS 679
Query: 249 DAY-NASVQHRLASSGV-NGALADPSSKKEPIVAAYMGDQNLQSSLNG-GPSISN 300
Y N S+ SS + + A P++ ++ L S+L G G +++N
Sbjct: 680 SFYGNNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVAN 734
Score = 37 (18.1 bits), Expect = 2.3e-82, Sum P(2) = 2.3e-82
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 38 VSFSSSPCPDG 48
+SFSSSP P G
Sbjct: 771 LSFSSSPGPVG 781
>CGD|CAL0000998 [details] [associations]
symbol:PUF3 species:5476 "Candida albicans" [GO:0032473
"external side of mitochondrial outer membrane" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0008298 "intracellular
mRNA localization" evidence=IEA] [GO:0051646 "mitochondrion
localization" evidence=IEA] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IEA]
[GO:0009060 "aerobic respiration" evidence=IEA] [GO:0007005
"mitochondrion organization" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 CGD:CAL0000998 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 eggNOG:COG5099 EMBL:AACQ01000198
EMBL:AACQ01000197 RefSeq:XP_711443.1 RefSeq:XP_711460.1
ProteinModelPortal:Q59P09 GeneID:3646939 GeneID:3646950
KEGG:cal:CaO19.1795 KEGG:cal:CaO19.9361 Uniprot:Q59P09
Length = 929
Score = 716 (257.1 bits), Expect = 2.7e-76, Sum P(3) = 2.7e-76
Identities = 142/309 (45%), Positives = 209/309 (67%)
Query: 358 NRNTGIYSGWQGQR--TFEGQR-TFEDSKKHSF----LEELKSSNAQKFELSDIAGRIVE 410
N ++G G +R F+G+ T H + LEE++S N + ++L DI G +E
Sbjct: 533 NNSSGSTPGVGSKRKGNFKGKNNTTNGGGNHIYRSPLLEEVRS-NPKPYQLKDIYGHAIE 591
Query: 411 FSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRK 470
F+ DQHGSRFIQQKL + EEK ++F E+ + +LMTDVFGNYVIQK+FE+G+ Q++
Sbjct: 592 FTKDQHGSRFIQQKLPEATEEEKETIFNEIWEISYELMTDVFGNYVIQKYFEYGTTTQKQ 651
Query: 471 ELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQ 530
L E ++G + LSLQMYGCRV+Q+ALE I+ + +++ EL H++ C +DQNGNHVIQ
Sbjct: 652 VLLESMIGHIHELSLQMYGCRVVQRALEAIDNEGQLRIIEELKDHILICCKDQNGNHVIQ 711
Query: 531 KCIECV-PAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESA 589
K IE + P +I +I+++ Q+ LSTHPYGCRVIQR+LE+ SD + I+ ++
Sbjct: 712 KSIEKIKPFSQIRYILTSLDNQIYHLSTHPYGCRVIQRLLEY-SDIDDQKLILSQLNNFL 770
Query: 590 FALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAE 649
+ L DQYGNYV QH+LE G E+ IL + G +VQ S+HK+ASNV+EKC+++GD +
Sbjct: 771 YYLILDQYGNYVIQHILENGTQEEKEPILEIVLGSVVQFSKHKFASNVIEKCIKFGDINQ 830
Query: 650 RELLIEEIL 658
R+ ++ E++
Sbjct: 831 RKRILHEVM 839
Score = 188 (71.2 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 57/235 (24%), Positives = 103/235 (43%)
Query: 425 LEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLS 484
LE + K K++ HA + D G+ IQ+ + ++++ + ++ L
Sbjct: 570 LEEVRSNPKPYQLKDIYGHAIEFTKDQHGSRFIQQKLPEATEEEKETIFNEIWEISYELM 629
Query: 485 LQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFI 544
++G VIQK E QK L+ + GH+ G V+Q+ +E + E I
Sbjct: 630 TDVFGNYVIQKYFEYGTTTQKQVLLESMIGHIHELSLQMYGCRVVQRALEAIDNEGQLRI 689
Query: 545 ISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQH 604
I + + G VIQ+ +E Q + I+ + + L+ YG V Q
Sbjct: 690 IEELKDHILICCKDQNGNHVIQKSIEKIKPFSQIRYILTSLDNQIYHLSTHPYGCRVIQR 749
Query: 605 VLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILG 659
+LE ++ ILS+L + + +Y + V++ LE G E+E ++E +LG
Sbjct: 750 LLEYSDIDDQKLILSQLNNFLYYLILDQYGNYVIQHILENGTQEEKEPILEIVLG 804
Score = 47 (21.6 bits), Expect = 2.7e-76, Sum P(3) = 2.7e-76
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 628 MSQHKYASNVVEKCLEYGDTAERELLIEEI 657
M + ++ + V++K +E D ER+LLI +I
Sbjct: 865 MVKDQFGNYVIQKLVEAFDGDERKLLIIKI 894
Score = 37 (18.1 bits), Expect = 2.7e-76, Sum P(3) = 2.7e-76
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 177 VAGYPSQGPVPMPFDATSGSSFNIRTTSV-STGEGIPHIGSTQHQKFYGH 225
+ Y + P+ + S N T ++ ST H +T++Q Y H
Sbjct: 219 IDNYNNNSPIQTAAALSINSDLNSDTVNINSTTTNSNH-DATKNQGNYSH 267
>WB|WBGene00004245 [details] [associations]
symbol:puf-9 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040017 "positive regulation of locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0006402 "mRNA catabolic process" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0002009 GO:GO:0005737 GO:GO:0040010 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0017148 GO:GO:0040011
GO:GO:0040017 GO:GO:0003730 GO:GO:0006402 EMBL:FO081143
eggNOG:COG5099 HSSP:Q14671 GeneTree:ENSGT00680000100664 PIR:T26218
RefSeq:NP_508980.2 ProteinModelPortal:Q23191 SMR:Q23191
STRING:Q23191 PaxDb:Q23191 EnsemblMetazoa:W06B11.2.1
EnsemblMetazoa:W06B11.2.2 GeneID:180850 KEGG:cel:CELE_W06B11.2
UCSC:W06B11.2 CTD:180850 WormBase:W06B11.2 HOGENOM:HOG000020400
InParanoid:Q23191 OMA:TIKPHIA NextBio:911254 Uniprot:Q23191
Length = 703
Score = 737 (264.5 bits), Expect = 6.7e-75, Sum P(2) = 6.7e-75
Identities = 155/326 (47%), Positives = 218/326 (66%)
Query: 354 PQGLNRNTGIYSGWQGQRTF--EGQRTFEDSKKHSFLEEL------KSSNAQKFE-LSDI 404
P G+ N G+ + W QR+F Q+ ++ +F + + N Q + L DI
Sbjct: 286 PNGMG-NGGVMNDWS-QRSFGMPQQQAQQNGLPPNFSQNPPRRRGPEDPNGQTPKTLQDI 343
Query: 405 AGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHG 464
++EF+ DQHGSRFIQQKLE S +K ++F VL +A +LMTDVFGNYVIQKFFE G
Sbjct: 344 KNNVIEFAKDQHGSRFIQQKLERASLRDKAAIFTPVLENAEELMTDVFGNYVIQKFFEFG 403
Query: 465 SPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQN 524
+ +QR +L + G V+ L+LQMYGCRVIQKALE +E + +++ E++G V++CV+DQN
Sbjct: 404 NNEQRNQLVGTIRGNVMKLALQMYGCRVIQKALEYVEEKYQHEILGEMEGQVLKCVKDQN 463
Query: 525 GNHVIQKCIECVPAEKIEFIISAFR----GQVATLSTHPYGCRVIQRVLEHCSDEQQGQC 580
GNHVIQK IE V E+++FII AF V TLS HPYGCRVIQRVLE+C++EQ+ Q
Sbjct: 464 GNHVIQKVIERVEPERLQFIIDAFTKNNSDNVYTLSVHPYGCRVIQRVLEYCNEEQK-QP 522
Query: 581 IVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSK-LAGKIVQMSQHKYASNVVE 639
++D + L DQYGNYV QHV+E G ++ QI+ ++ +++ +QHK+ASNV+E
Sbjct: 523 VLDALQIHLKQLVLDQYGNYVIQHVIEHGSPSDKEQIVQDVISDDLLKFAQHKFASNVIE 582
Query: 640 KCLEYGDTAERELLIEEILGQSEEND 665
KCL +G AER L+I+++ G + ND
Sbjct: 583 KCLTFGGHAERNLIIDKVCG--DPND 606
Score = 246 (91.7 bits), Expect = 2.3e-16, Sum P(2) = 2.3e-16
Identities = 67/264 (25%), Positives = 125/264 (47%)
Query: 394 SNAQKFEL-SDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVF 452
+N Q+ +L I G +++ ++ +G R IQ+ LE+ + + + E+ K + D
Sbjct: 404 NNEQRNQLVGTIRGNVMKLALQMYGCRVIQKALEYVEEKYQHEILGEMEGQVLKCVKDQN 463
Query: 453 GNYVIQKFFEHGSPDQRKELAEKLV----GQVLPLSLQMYGCRVIQKALEVIELHQKSQL 508
GN+VIQK E P++ + + + V LS+ YGCRVIQ+ LE QK +
Sbjct: 464 GNHVIQKVIERVEPERLQFIIDAFTKNNSDNVYTLSVHPYGCRVIQRVLEYCNEEQKQPV 523
Query: 509 VLELDGHVMRCVRDQNGNHVIQKCIEC-VPAEKIEFIISAFRGQVATLSTHPYGCRVIQR 567
+ L H+ + V DQ GN+VIQ IE P++K + + + + H + VI++
Sbjct: 524 LDALQIHLKQLVLDQYGNYVIQHVIEHGSPSDKEQIVQDVISDDLLKFAQHKFASNVIEK 583
Query: 568 VLEHCSDEQQGQCIVDEILESA-------FALAQDQYGNYVTQHVLERGKSYERTQILSK 620
L ++ I+D++ + +D + NYV Q +L+ R +I
Sbjct: 584 CLTFGGHAERN-LIIDKVCGDPNDPSPPLLQMMKDPFANYVVQKMLDVADPQHRKKITLT 642
Query: 621 LAGKIVQMSQHKYASNVVEKCLEY 644
+ I + ++ + +++ K +Y
Sbjct: 643 IKPHIATLRKYNFGKHILLKLEKY 666
Score = 213 (80.0 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 68/254 (26%), Positives = 117/254 (46%)
Query: 410 EFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQR 469
E D G+ IQ+ E + E++ + + + KL ++G VIQK E+ +
Sbjct: 385 ELMTDVFGNYVIQKFFEFGNNEQRNQLVGTIRGNVMKLALQMYGCRVIQKALEYVEEKYQ 444
Query: 470 KELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL-----DGHVMRCVRDQN 524
E+ ++ GQVL G VIQK +E +E ++ Q +++ +V
Sbjct: 445 HEILGEMEGQVLKCVKDQNGNHVIQKVIERVE-PERLQFIIDAFTKNNSDNVYTLSVHPY 503
Query: 525 GNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDE 584
G VIQ+ +E E+ + ++ A + + L YG VIQ V+EH S + Q + D
Sbjct: 504 GCRVIQRVLEYCNEEQKQPVLDALQIHLKQLVLDQYGNYVIQHVIEHGSPSDKEQIVQDV 563
Query: 585 ILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGK-------IVQMSQHKYASNV 637
I + AQ ++ + V + L G ER I+ K+ G ++QM + +A+ V
Sbjct: 564 ISDDLLKFAQHKFASNVIEKCLTFGGHAERNLIIDKVCGDPNDPSPPLLQMMKDPFANYV 623
Query: 638 VEKCLEYGDTAERE 651
V+K L+ D R+
Sbjct: 624 VQKMLDVADPQHRK 637
Score = 37 (18.1 bits), Expect = 6.7e-75, Sum P(2) = 6.7e-75
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 269 ADPSSKKEPIVAAYMGDQNLQSSLNG 294
ADPS+ + A ++ ++N NG
Sbjct: 157 ADPSNGMPGMAAEFVNNENGMPGPNG 182
>POMBASE|SPAC1687.22c [details] [associations]
symbol:puf3 "RNA-binding protein Puf3 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005741 "mitochondrial outer membrane"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0033554
"cellular response to stress" evidence=IEP] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC1687.22c GO:GO:0005829 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CU329670_GR GO:GO:0005741 GO:GO:0033554 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 RefSeq:NP_593141.2 HSSP:Q14671
ProteinModelPortal:O94462 SMR:O94462 EnsemblFungi:SPAC1687.22c.1
GeneID:2542300 KEGG:spo:SPAC1687.22c OrthoDB:EOG4RR9RJ
NextBio:20803362 Uniprot:O94462
Length = 732
Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
Identities = 138/277 (49%), Positives = 190/277 (68%)
Query: 394 SNAQK-FELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHAS-KLMTDV 451
+N Q+ FELSDI G +V FS DQHGSRFIQQKL + EE+ +VF+E+ + +LM D+
Sbjct: 386 ANKQRHFELSDILGNVVLFSTDQHGSRFIQQKLATATEEEREAVFQEIASTSCLQLMMDI 445
Query: 452 FGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE 511
FGNYV+QK+FE G+ Q++ L ++ G V LSLQMYGCRV+QKA+E I + QL+ E
Sbjct: 446 FGNYVVQKYFEFGNEKQKQILLSQIKGHVFSLSLQMYGCRVVQKAIEYISPEHQVQLIQE 505
Query: 512 LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEH 571
LDGHV+ CV DQNGNHVIQK IEC+ ++FI+ A R Q+ LS HPYGCRVIQR +EH
Sbjct: 506 LDGHVLDCVCDQNGNHVIQKAIECIDTGHLQFILRALRPQIHVLSAHPYGCRVIQRAIEH 565
Query: 572 CSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQH 631
C E++ I++E+L L QDQYGNYV QH+L G ++ I + ++ +S H
Sbjct: 566 CHSERK--LIIEELLPHILKLTQDQYGNYVVQHILRTGSESDKKYIFDLMIDHLLFLSCH 623
Query: 632 KYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLL 668
K+ASNVVE+C+ Y +R ++ +I+ + EN ++L
Sbjct: 624 KFASNVVERCISYISDVDRRRILNKIISEKAENCSIL 660
Score = 284 (105.0 bits), Expect = 1.6e-21, P = 1.6e-21
Identities = 71/256 (27%), Positives = 127/256 (49%)
Query: 390 ELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMT 449
E + ++ LS I G + S+ +G R +Q+ +E+ S E +V + +E+ H +
Sbjct: 456 EFGNEKQKQILLSQIKGHVFSLSLQMYGCRVVQKAIEYISPEHQVQLIQELDGHVLDCVC 515
Query: 450 DVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLV 509
D GN+VIQK E + + L Q+ LS YGCRVIQ+A+E H + +L+
Sbjct: 516 DQNGNHVIQKAIECIDTGHLQFILRALRPQIHVLSAHPYGCRVIQRAIE--HCHSERKLI 573
Query: 510 LE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRV 568
+E L H+++ +DQ GN+V+Q + ++I + LS H + V++R
Sbjct: 574 IEELLPHILKLTQDQYGNYVVQHILRTGSESDKKYIFDLMIDHLLFLSCHKFASNVVERC 633
Query: 569 LEHCSDEQQGQC---IVDEILESAFALA---QDQYGNYVTQHVLERGKSYERTQILSKLA 622
+ + SD + + I+ E E+ L +D+Y NYV Q +L+ ER ++S +
Sbjct: 634 ISYISDVDRRRILNKIISEKAENCSILMLMMKDKYANYVIQKLLDASPEEERDLLISYIY 693
Query: 623 GKIVQMSQHKYASNVV 638
I + + Y +++
Sbjct: 694 PHISVLKKFTYGKHLI 709
Score = 233 (87.1 bits), Expect = 6.1e-16, P = 6.1e-16
Identities = 59/197 (29%), Positives = 105/197 (53%)
Query: 463 HGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDG-HVMRCVR 521
H + + EL++ ++G V+ S +G R IQ+ L ++ + E+ ++ +
Sbjct: 385 HANKQRHFELSD-ILGNVVLFSTDQHGSRFIQQKLATATEEEREAVFQEIASTSCLQLMM 443
Query: 522 DQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCI 581
D GN+V+QK E ++ + ++S +G V +LS YGCRV+Q+ +E+ S E Q Q +
Sbjct: 444 DIFGNYVVQKYFEFGNEKQKQILLSQIKGHVFSLSLQMYGCRVVQKAIEYISPEHQVQ-L 502
Query: 582 VDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKC 641
+ E+ DQ GN+V Q +E + IL L +I +S H Y V+++
Sbjct: 503 IQELDGHVLDCVCDQNGNHVIQKAIECIDTGHLQFILRALRPQIHVLSAHPYGCRVIQRA 562
Query: 642 LEYGDTAERELLIEEIL 658
+E+ + ER+L+IEE+L
Sbjct: 563 IEHCHS-ERKLIIEELL 578
Score = 221 (82.9 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 71/288 (24%), Positives = 138/288 (47%)
Query: 381 DSKKHSFLEE-LKSSNAQKFE--LSDIAGR-IVEFSVDQHGSRFIQQKLEHCSAEEKVSV 436
D F+++ L ++ ++ E +IA ++ +D G+ +Q+ E + ++K +
Sbjct: 407 DQHGSRFIQQKLATATEEEREAVFQEIASTSCLQLMMDIFGNYVVQKYFEFGNEKQKQIL 466
Query: 437 FKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKA 496
++ H L ++G V+QK E+ SP+ + +L ++L G VL G VIQKA
Sbjct: 467 LSQIKGHVFSLSLQMYGCRVVQKAIEYISPEHQVQLIQELDGHVLDCVCDQNGNHVIQKA 526
Query: 497 LEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLS 556
+E I+ ++ L + G VIQ+ IE +E+ + II + L+
Sbjct: 527 IECIDTGHLQFILRALRPQIHVLSAHPYGCRVIQRAIEHCHSER-KLIIEELLPHILKLT 585
Query: 557 THPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQ 616
YG V+Q +L S+ + + I D +++ L+ ++ + V + + +R +
Sbjct: 586 QDQYGNYVVQHILRTGSESDK-KYIFDLMIDHLLFLSCHKFASNVVERCISYISDVDRRR 644
Query: 617 ILSKLAGK-------IVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 657
IL+K+ + ++ M + KYA+ V++K L+ ER+LLI I
Sbjct: 645 ILNKIISEKAENCSILMLMMKDKYANYVIQKLLDASPEEERDLLISYI 692
Score = 214 (80.4 bits), Expect = 7.1e-14, P = 7.1e-14
Identities = 50/178 (28%), Positives = 96/178 (53%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
+F L + +I S +G R IQ+ +EHC +E K+ + +E+LPH KL D +GNYV+
Sbjct: 536 QFILRALRPQIHVLSAHPYGCRVIQRAIEHCHSERKL-IIEELLPHILKLTQDQYGNYVV 594
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVI-ELHQK---SQLVLELD 513
Q GS +K + + ++ +L LS + V+++ + I ++ ++ ++++ E
Sbjct: 595 QHILRTGSESDKKYIFDLMIDHLLFLSCHKFASNVVERCISYISDVDRRRILNKIISEKA 654
Query: 514 GH---VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRV 568
+ +M ++D+ N+VIQK ++ P E+ + +IS ++ L YG +I V
Sbjct: 655 ENCSILMLMMKDKYANYVIQKLLDASPEEERDLLISYIYPHISVLKKFTYGKHLIMSV 712
>SGD|S000003936 [details] [associations]
symbol:PUF3 "Protein of the mitochondrial outer surface"
species:4932 "Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=IDA] [GO:0005741 "mitochondrial outer membrane"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0032473
"external side of mitochondrial outer membrane" evidence=IDA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IMP] [GO:0051646
"mitochondrion localization" evidence=IMP] [GO:0007005
"mitochondrion organization" evidence=IMP] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009060 "aerobic respiration"
evidence=IMP] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0016020 "membrane" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SGD:S000003936 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0005741 GO:GO:0003729
EMBL:BK006945 GO:GO:0009060 GO:GO:0007005 GO:GO:0008298
GO:GO:0000288 EMBL:X97560 EMBL:X91488 GO:GO:0051646 eggNOG:COG5099
GO:GO:0032473 OrthoDB:EOG4RR9RJ EMBL:Z73117 EMBL:Z73118 PIR:S64755
RefSeq:NP_013088.1 PDB:3K49 PDB:3K4E PDBsum:3K49 PDBsum:3K4E
ProteinModelPortal:Q07807 SMR:Q07807 DIP:DIP-4449N IntAct:Q07807
MINT:MINT-552454 STRING:Q07807 PaxDb:Q07807 PeptideAtlas:Q07807
EnsemblFungi:YLL013C GeneID:850647 KEGG:sce:YLL013C CYGD:YLL013c
GeneTree:ENSGT00680000100664 OMA:FIPYLIQ EvolutionaryTrace:Q07807
NextBio:966590 Genevestigator:Q07807 GermOnline:YLL013C
Uniprot:Q07807
Length = 879
Score = 676 (243.0 bits), Expect = 6.8e-71, Sum P(2) = 6.8e-71
Identities = 152/347 (43%), Positives = 218/347 (62%)
Query: 330 ASPVLPSS-PVGSTSQLGLRHEMRLPQGLNRNTGIYSGWQGQRTFEGQRTFEDSKKHSFL 388
A+P L +S P +TS+ + N + +S Q + Q+T+ S L
Sbjct: 462 ANPYLENSIPTKNTSKKNASSKSNESTANNHKSHSHSHPHSQSLQQQQQTYHRSP---LL 518
Query: 389 EELKSSNAQK-----FELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPH 443
E+L++S++ K L DI G +EF DQHGSRFIQ++L A EK +F E+
Sbjct: 519 EQLRNSSSDKNSNSNMSLKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDD 578
Query: 444 ASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELH 503
A +L DVFGNYVIQKFFE GS Q+ L ++ G + LSLQMY CRVIQKALE I+ +
Sbjct: 579 AIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSN 638
Query: 504 QKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCR 563
Q+ +LVLEL V++ ++DQNGNHVIQK IE +P EK+ FI+S+ G + LSTH YGCR
Sbjct: 639 QRIELVLELSDSVLQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCR 698
Query: 564 VIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGK--SYE----RTQI 617
VIQR+LE S E Q + I++E+ + L QDQYGNYV Q+VL++ + + E + +I
Sbjct: 699 VIQRLLEFGSSEDQ-ESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIKQEI 757
Query: 618 LSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEEN 664
+ +A +V+ S+HK+ASNVVEK + YG +++L+I +IL + + +
Sbjct: 758 IETVANNVVEYSKHKFASNVVEKSILYGSKNQKDLIISKILPRDKNH 804
Score = 60 (26.2 bits), Expect = 6.8e-71, Sum P(2) = 6.8e-71
Identities = 29/93 (31%), Positives = 41/93 (44%)
Query: 126 SLGMNNAH--NAGTYMPSGNP-FYPSFQPSGAGV----YPSQYNVGGYALNSALFPPFVA 178
SL NAH + + P F PS P+ G P+Q + G A N+ FPP++
Sbjct: 252 SLESENAHYPKRNIWNVANTPVFRPSNNPAAVGATNVALPNQQD--GPANNN--FPPYMN 307
Query: 179 GYPS----QGPVPMPF-DATSGSSFNIRTTSVS 206
G+P QGP F + GS N + +S
Sbjct: 308 GFPPNQFHQGPHYQNFPNYLIGSPSNFISQMIS 340
Score = 50 (22.7 bits), Expect = 7.7e-70, Sum P(2) = 7.7e-70
Identities = 26/105 (24%), Positives = 40/105 (38%)
Query: 193 TSGSSFNIRTTSVSTGEGIPHIGSTQHQKFYGHQGLMLQSPFVDPLHMQYFQHPFGDAYN 252
+S SS + T++S G P ST +KF+G+ G Q D + + N
Sbjct: 73 SSESSPIFKKTALSVGTAPPF--STNSKKFFGNGGNYYQYRSTDTASLSSASYN-----N 125
Query: 253 ASVQHRLASSGVNGALADPSSKKEPIVAA---YMGDQNLQSSLNG 294
H A+ G N + + +A Y G+ N S G
Sbjct: 126 YHTHHTAANLGKNNKVNHLLGQYSASIAGPVYYNGNDNNNSGGEG 170
>ZFIN|ZDB-GENE-081031-76 [details] [associations]
symbol:pum2 "pumilio homolog 2 (Drosophila)"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 ZFIN:ZDB-GENE-081031-76
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
GeneTree:ENSGT00390000017241 EMBL:CABZ01062788 EMBL:CABZ01062789
EMBL:CABZ01062790 EMBL:CU468963 IPI:IPI00864826
Ensembl:ENSDART00000086578 Bgee:F1R4Q6 Uniprot:F1R4Q6
Length = 1206
Score = 658 (236.7 bits), Expect = 2.9e-68, Sum P(3) = 2.9e-68
Identities = 138/281 (49%), Positives = 191/281 (67%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L D+ G +VEFS DQHGSRFIQQKLE ++ E+ VF E+L
Sbjct: 821 SGRSRLLEDFRNNRFPNLQLRDLPGHMVEFSQDQHGSRFIQQKLERATSAERQMVFGEIL 880
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LMTDVFGNYVIQKFFE GS DQ+ LA ++ G VLPL+LQMYGCRVIQKALE I
Sbjct: 881 QAAYQLMTDVFGNYVIQKFFEFGSADQKLALATRIRGHVLPLALQMYGCRVIQKALESIS 940
Query: 502 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 559
Q+ S +V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 941 SDQQVISDIVRELDGHVLKCVKDQNGNHVVQKCIECVQPQALQFIIDAFQGQVFVLSTHP 1000
Query: 560 YGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILS 619
YGCRVIQR+LEHC+ EQ I++E+ + + +Q G T L+ +++ +I S
Sbjct: 1001 YGCRVIQRILEHCTQEQTLP-ILEELHQHS-----EQLGQKNTSVQLK--VTFKGLRICS 1052
Query: 620 KLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQ 660
+ + +Y + V++ LE+G ++ ++ E+ G+
Sbjct: 1053 -----FDLLFKDQYGNYVIQHVLEHGRPEDKSKIVAEVRGK 1088
Score = 301 (111.0 bits), Expect = 6.3e-23, Sum P(3) = 6.3e-23
Identities = 90/300 (30%), Positives = 150/300 (50%)
Query: 380 EDSKKHSFLEELKSSNAQKFELSDIAGRIVEFS----VDQHGSRFIQQKLEHCSAEEKVS 435
+D F+++ K A E + G I++ + D G+ IQ+ E SA++K++
Sbjct: 852 QDQHGSRFIQQ-KLERATSAERQMVFGEILQAAYQLMTDVFGNYVIQKFFEFGSADQKLA 910
Query: 436 VFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQR--KELAEKLVGQVLPLSLQMYGCRVI 493
+ + H L ++G VIQK E S DQ+ ++ +L G VL G V+
Sbjct: 911 LATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISDIVRELDGHVLKCVKDQNGNHVV 970
Query: 494 QKALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIE-CVPAEKIEFI--ISAFR 549
QK +E ++ Q Q +++ G V G VIQ+ +E C + + + +
Sbjct: 971 QKCIECVQ-PQALQFIIDAFQGQVFVLSTHPYGCRVIQRILEHCTQEQTLPILEELHQHS 1029
Query: 550 GQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERG 609
Q+ +T +V + L CS + L +DQYGNYV QHVLE G
Sbjct: 1030 EQLGQKNTSVQ-LKVTFKGLRICSFD---------------LLFKDQYGNYVIQHVLEHG 1073
Query: 610 KSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLY 669
+ ++++I++++ GK++ +SQHK+ASNVVEKC+ + AER LLI+E+ Q + + LY
Sbjct: 1074 RPEDKSKIVAEVRGKVLALSQHKFASNVVEKCVIHSSRAERALLIDEVCCQKDGPHSALY 1133
Score = 234 (87.4 bits), Expect = 1.7e-15, Sum P(3) = 1.7e-15
Identities = 76/273 (27%), Positives = 132/273 (48%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV--SVFKEVLPHASKLMTDVFG 453
QK L+ I G ++ ++ +G R IQ+ LE S++++V + +E+ H K + D G
Sbjct: 907 QKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISDIVRELDGHVLKCVKDQNG 966
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD 513
N+V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL
Sbjct: 967 NHVVQKCIECVQPQALQFIIDAFQGQVFVLSTHPYGCRVIQRILEHCTQEQTLPILEELH 1026
Query: 514 GHVMRCVRDQNG--NHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEH 571
H +Q G N +Q + F + F+ Q YG VIQ VLEH
Sbjct: 1027 QH-----SEQLGQKNTSVQLKVTFKGLRICSFDL-LFKDQ--------YGNYVIQHVLEH 1072
Query: 572 CSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLA-------GK 624
E + + IV E+ AL+Q ++ + V + + ER ++ ++
Sbjct: 1073 GRPEDKSK-IVAEVRGKVLALSQHKFASNVVEKCVIHSSRAERALLIDEVCCQKDGPHSA 1131
Query: 625 IVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 657
+ M + +YA+ VV++ ++ + A+R++++ +I
Sbjct: 1132 LYTMMKDQYANYVVQRMIDMAEPAQRKIIMHKI 1164
Score = 194 (73.4 bits), Expect = 3.7e-11, Sum P(3) = 3.7e-11
Identities = 64/266 (24%), Positives = 125/266 (46%)
Query: 391 LKSSNAQKFELSDIA----GRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASK 446
L+S ++ + +SDI G +++ DQ+G+ +Q+ +E + +
Sbjct: 936 LESISSDQQVISDIVRELDGHVLKCVKDQNGNHVVQKCIECVQPQALQFIIDAFQGQVFV 995
Query: 447 LMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEV-IELHQK 505
L T +G VIQ+ EH + +Q + E+L + ++ QK V +++ K
Sbjct: 996 LSTHPYGCRVIQRILEHCTQEQTLPILEEL---------HQHSEQLGQKNTSVQLKVTFK 1046
Query: 506 SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
+ D +DQ GN+VIQ +E E I++ RG+V LS H + V+
Sbjct: 1047 GLRICSFD----LLFKDQYGNYVIQHVLEHGRPEDKSKIVAEVRGKVLALSQHKFASNVV 1102
Query: 566 QRVLEHCSDEQQGQCIVDEIL------ESA-FALAQDQYGNYVTQHVLERGKSYERTQIL 618
++ + H S ++ ++DE+ SA + + +DQY NYV Q +++ + +R I+
Sbjct: 1103 EKCVIHSSRAERA-LLIDEVCCQKDGPHSALYTMMKDQYANYVVQRMIDMAEPAQRKIIM 1161
Query: 619 SKLAGKIVQMSQHKYASNVVEKCLEY 644
K+ I + ++ Y +++ K +Y
Sbjct: 1162 HKIRPHIATLRKYTYGKHILAKLEKY 1187
Score = 55 (24.4 bits), Expect = 2.9e-68, Sum P(3) = 2.9e-68
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 130 NNAHNAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGG-YALNSALFPPFVAGYPSQGPVP 187
++ H G +P+G+ Y S P Y S + ++ +S LFPP A Y +P
Sbjct: 764 SSIHLGG--LPNGSGRYISAAPGAEAKYRSSGSTSSLFSSSSQLFPPPRARYSRSDVMP 820
Score = 38 (18.4 bits), Expect = 2.9e-68, Sum P(3) = 2.9e-68
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 37 AVSFSSSPCPDGTETSRNP 55
++ +SSSP P G +P
Sbjct: 731 SLGYSSSPSPIGLTPGHSP 749
>ASPGD|ASPL0000000865 [details] [associations]
symbol:AN6587 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000110 eggNOG:COG5099 OrthoDB:EOG4RR9RJ
RefSeq:XP_664191.1 ProteinModelPortal:Q5AYP3
EnsemblFungi:CADANIAT00007365 GeneID:2870653 KEGG:ani:AN6587.2
HOGENOM:HOG000201252 OMA:SHKSSPQ Uniprot:Q5AYP3
Length = 849
Score = 669 (240.6 bits), Expect = 4.7e-68, Sum P(2) = 4.7e-68
Identities = 129/272 (47%), Positives = 190/272 (69%)
Query: 397 QKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYV 456
++FEL DI G IVEFS DQ+GSRF+QQK+E +++EK VF+E+LP+ +L D+FGNYV
Sbjct: 453 KRFELKDIYGHIVEFSGDQYGSRFLQQKIETANSDEKDRVFREILPNFLQLAQDIFGNYV 512
Query: 457 IQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHV 516
QK +EHG+ Q+K + E + +V+ LSL YGCRV+QKALE + Q++ LV E+ V
Sbjct: 513 AQKLYEHGNQTQKKMMTEDMRSKVVKLSLSPYGCRVVQKALEHVLTDQQAWLVREIQPQV 572
Query: 517 MRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQ 576
+ CV Q+GNHVIQK E VP + + ++ +FRGQV STH YGCRVIQR+LE C D
Sbjct: 573 LECVESQHGNHVIQKVFEYVPTQYTKGLVDSFRGQVERQSTHSYGCRVIQRMLEFCEDVD 632
Query: 577 QGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASN 636
+ + I+ EI A L +DQYGNYV QH+++ G+ +R+ ++ + K++ S+HK+ASN
Sbjct: 633 R-RFILAEIRACAPRLIEDQYGNYVIQHIIQSGEEEDRSFMIEMVKQKLLWYSKHKFASN 691
Query: 637 VVEKCLEYGDTAERELLIEEILGQSEENDNLL 668
VVEK +E+G+ A+R+ +I + ++E ++ L
Sbjct: 692 VVEKSIEFGNEAQRQDIITRLTAKTEGHETQL 723
Score = 302 (111.4 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 77/270 (28%), Positives = 130/270 (48%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKL 447
L E + +K D+ ++V+ S+ +G R +Q+ LEH +++ + +E+ P +
Sbjct: 516 LYEHGNQTQKKMMTEDMRSKVVKLSLSPYGCRVVQKALEHVLTDQQAWLVREIQPQVLEC 575
Query: 448 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQ 507
+ GN+VIQK FE+ K L + GQV S YGCRVIQ+ LE E +
Sbjct: 576 VESQHGNHVIQKVFEYVPTQYTKGLVDSFRGQVERQSTHSYGCRVIQRMLEFCEDVDRRF 635
Query: 508 LVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQR 567
++ E+ R + DQ GN+VIQ I+ E F+I + ++ S H + V+++
Sbjct: 636 ILAEIRACAPRLIEDQYGNYVIQHIIQSGEEEDRSFMIEMVKQKLLWYSKHKFASNVVEK 695
Query: 568 VLEHCSDEQQGQCIVDEILESA-------FALAQDQYGNYVTQHVLERGKSYERTQILSK 620
+E +E Q Q I+ + L DQYGNYV Q VL ER ++ +
Sbjct: 696 SIEF-GNEAQRQDIITRLTAKTEGHETQLIELMADQYGNYVFQKVLGHLSGVERAALVDR 754
Query: 621 LAGKIVQMSQHKYASNV--VEKCLEYGDTA 648
+ +V + + + +EK + GD++
Sbjct: 755 IKPLLVHLKKSNCGKQIAAIEKLI--GDSS 782
Score = 219 (82.2 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 68/283 (24%), Positives = 134/283 (47%)
Query: 387 FLEE-LKSSNAQKFE--LSDIAGRIVEFSVDQHGSRFIQQKL-EHCSAEEKVSVFKEVLP 442
FL++ ++++N+ + + +I ++ + D G+ ++ QKL EH + +K + +++
Sbjct: 476 FLQQKIETANSDEKDRVFREILPNFLQLAQDIFGN-YVAQKLYEHGNQTQKKMMTEDMRS 534
Query: 443 HASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIEL 502
KL +G V+QK EH DQ+ L ++ QVL +G VIQK E +
Sbjct: 535 KVVKLSLSPYGCRVVQKALEHVLTDQQAWLVREIQPQVLECVESQHGNHVIQKVFEYVPT 594
Query: 503 HQKSQLVLELDGHVMRCVRDQNGNHVIQKCIE-CVPAEKIEFIISAFRGQVATLSTHPYG 561
LV G V R G VIQ+ +E C ++ FI++ R L YG
Sbjct: 595 QYTKGLVDSFRGQVERQSTHSYGCRVIQRMLEFCEDVDR-RFILAEIRACAPRLIEDQYG 653
Query: 562 CRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKL 621
VIQ +++ +E+ +++ + + ++ ++ + V + +E G +R I+++L
Sbjct: 654 NYVIQHIIQS-GEEEDRSFMIEMVKQKLLWYSKHKFASNVVEKSIEFGNEAQRQDIITRL 712
Query: 622 AGK-------IVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 657
K ++++ +Y + V +K L + ER L++ I
Sbjct: 713 TAKTEGHETQLIELMADQYGNYVFQKVLGHLSGVERAALVDRI 755
Score = 136 (52.9 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 35/170 (20%), Positives = 83/170 (48%)
Query: 502 LHQKSQL--VLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 559
LH K++ + ++ GH++ DQ G+ +Q+ IE +++ + + L+
Sbjct: 448 LHGKNKRFELKDIYGHIVEFSGDQYGSRFLQQKIETANSDEKDRVFREILPNFLQLAQDI 507
Query: 560 YGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILS 619
+G V Q++ EH ++ Q + + +++ L+ YG V Q LE + ++ ++
Sbjct: 508 FGNYVAQKLYEH-GNQTQKKMMTEDMRSKVVKLSLSPYGCRVVQKALEHVLTDQQAWLVR 566
Query: 620 KLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLY 669
++ ++++ + ++ ++V++K EY T + L++ GQ E Y
Sbjct: 567 EIQPQVLECVESQHGNHVIQKVFEYVPTQYTKGLVDSFRGQVERQSTHSY 616
Score = 40 (19.1 bits), Expect = 4.7e-68, Sum P(2) = 4.7e-68
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 337 SPVGSTSQLGLRHEMRLPQGLNRNTGIYSGWQGQRTFEGQRTF 379
SP G TS +G R + R+ G+ +G G + Q F
Sbjct: 135 SPAGETSAMGNR--VLFNNNDRRSVGL-TGTAGTAAYPAQSGF 174
>WB|WBGene00004244 [details] [associations]
symbol:puf-8 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0007276 "gamete
generation" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0040022 "feminization of hermaphroditic
germ-line" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0007140 "male meiosis" evidence=IMP] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] [GO:0043186 "P granule" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0007283 GO:GO:0003723
GO:GO:0042127 GO:GO:0007140 GO:GO:0040027 GO:GO:0040020
GO:GO:0040022 GO:GO:0043186 eggNOG:COG5099
GeneTree:ENSGT00680000100664 EMBL:FO080733 PIR:T15717
RefSeq:NP_495523.3 ProteinModelPortal:Q09487 SMR:Q09487
DIP:DIP-27165N MINT:MINT-1110716 STRING:Q09487 PaxDb:Q09487
EnsemblMetazoa:C30G12.7 GeneID:174197 KEGG:cel:CELE_C30G12.7
UCSC:C30G12.7 CTD:174197 WormBase:C30G12.7 InParanoid:Q09487
OMA:KDSIFDE NextBio:882961 Uniprot:Q09487
Length = 535
Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 108/262 (41%), Positives = 169/262 (64%)
Query: 397 QKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAE-EKVSVFKEVLPHASKLMTDVFGNY 455
+ +LSDI G +++F+ DQ GSRFIQQ+L EK S+F EV+ +A +L+ D+FGNY
Sbjct: 188 KNLKLSDIRGALLKFAKDQVGSRFIQQELASSKDRFEKDSIFDEVVSNADELVDDIFGNY 247
Query: 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH 515
V+QKFFE+G L + ++ +V + QMY CRV+QKALE I + +++ ++
Sbjct: 248 VVQKFFEYGEERHWARLVDAIIDRVPEYAFQMYACRVLQKALEKINEPLQIKILSQIRHV 307
Query: 516 VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAF---RGQVATLSTHPYGCRVIQRVLEHC 572
+ RC++DQNGNHV+QK IE V + ++FI+ + +S PYGCRV+QR LEHC
Sbjct: 308 IHRCMKDQNGNHVVQKAIEKVSPQYVQFIVDTLLESSNTIYEMSVDPYGCRVVQRCLEHC 367
Query: 573 SDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHK 632
S Q + ++ +I + +A +QYGNYV QHV+E G +R I+++++ + + + HK
Sbjct: 368 SPSQT-KPVIGQIHKRFDEIANNQYGNYVVQHVIEHGSEEDRMVIVTRVSNNLFEFATHK 426
Query: 633 YASNVVEKCLEYGDTAERELLI 654
Y+SNV+EKCLE G + +++
Sbjct: 427 YSSNVIEKCLEQGAVYHKSMIV 448
Score = 227 (85.0 bits), Expect = 1.5e-15, P = 1.5e-15
Identities = 61/250 (24%), Positives = 115/250 (46%)
Query: 404 IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEH 463
I R+ E++ + R +Q+ LE + ++ + ++ + M D GN+V+QK E
Sbjct: 268 IIDRVPEYAFQMYACRVLQKALEKINEPLQIKILSQIRHVIHRCMKDQNGNHVVQKAIEK 327
Query: 464 GSPDQRKELAEKLV---GQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCV 520
SP + + + L+ + +S+ YGCRV+Q+ LE Q ++ ++
Sbjct: 328 VSPQYVQFIVDTLLESSNTIYEMSVDPYGCRVVQRCLEHCSPSQTKPVIGQIHKRFDEIA 387
Query: 521 RDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLE-----HCSDE 575
+Q GN+V+Q IE E I++ + +TH Y VI++ LE H S
Sbjct: 388 NNQYGNYVVQHVIEHGSEEDRMVIVTRVSNNLFEFATHKYSSNVIEKCLEQGAVYHKSMI 447
Query: 576 QQGQCIVDE-ILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYA 634
C E + + +DQY NYV Q + ++ S +R +++ + I + Q +
Sbjct: 448 VGAACHHQEGSVPIVVQMMKDQYANYVVQKMFDQVTSEQRRELILTVRPHIPVLRQFPHG 507
Query: 635 SNVVEKCLEY 644
+++ K +Y
Sbjct: 508 KHILAKLEKY 517
Score = 217 (81.4 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 49/175 (28%), Positives = 88/175 (50%)
Query: 401 LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKF 460
L + + I E SVD +G R +Q+ LEHCS + V ++ ++ + +GNYV+Q
Sbjct: 340 LLESSNTIYEMSVDPYGCRVVQRCLEHCSPSQTKPVIGQIHKRFDEIANNQYGNYVVQHV 399
Query: 461 FEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH----- 515
EHGS + R + ++ + + Y VI+K LE ++ KS +V H
Sbjct: 400 IEHGSEEDRMVIVTRVSNNLFEFATHKYSSNVIEKCLEQGAVYHKSMIVGAACHHQEGSV 459
Query: 516 --VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRV 568
V++ ++DQ N+V+QK + V +E+ +I R + L P+G ++ ++
Sbjct: 460 PIVVQMMKDQYANYVVQKMFDQVTSEQRRELILTVRPHIPVLRQFPHGKHILAKL 514
Score = 200 (75.5 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 71/292 (24%), Positives = 133/292 (45%)
Query: 380 EDSKKHSFLEELKSSNAQKFELSDIAGRIV----EFSVDQHGSRFIQQKLEHCSAEEKVS 435
+D F+++ +S+ +FE I +V E D G+ +Q+ E+
Sbjct: 204 KDQVGSRFIQQELASSKDRFEKDSIFDEVVSNADELVDDIFGNYVVQKFFEYGEERHWAR 263
Query: 436 VFKEVLPHASKLMTDVFGNYVIQKFFEH-GSPDQRKELAEKLVGQVLPLSLQ-MYGCRVI 493
+ ++ + ++ V+QK E P Q K L++ + V+ ++ G V+
Sbjct: 264 LVDAIIDRVPEYAFQMYACRVLQKALEKINEPLQIKILSQ--IRHVIHRCMKDQNGNHVV 321
Query: 494 QKALEVIELHQKSQLV---LELDGHVMRCVRDQNGNHVIQKCIE-CVPAEKIEFIISAFR 549
QKA+E + +V LE + D G V+Q+C+E C P++ + +I
Sbjct: 322 QKAIEKVSPQYVQFIVDTLLESSNTIYEMSVDPYGCRVVQRCLEHCSPSQT-KPVIGQIH 380
Query: 550 GQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERG 609
+ ++ + YG V+Q V+EH S+E + IV + + F A +Y + V + LE+G
Sbjct: 381 KRFDEIANNQYGNYVVQHVIEHGSEEDR-MVIVTRVSNNLFEFATHKYSSNVIEKCLEQG 439
Query: 610 KSYERTQILSKLA----GKI---VQMSQHKYASNVVEKCLEYGDTAERELLI 654
Y ++ I+ G + VQM + +YA+ VV+K + + +R LI
Sbjct: 440 AVYHKSMIVGAACHHQEGSVPIVVQMMKDQYANYVVQKMFDQVTSEQRRELI 491
Score = 164 (62.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 55/210 (26%), Positives = 96/210 (45%)
Query: 465 SPDQRKELA-EKLVGQVLPLSLQMYGCRVIQKALEVI-ELHQKSQLVLELDGHVMRCVRD 522
+P K L + G +L + G R IQ+ L + +K + E+ + V D
Sbjct: 183 NPAMMKNLKLSDIRGALLKFAKDQVGSRFIQQELASSKDRFEKDSIFDEVVSNADELVDD 242
Query: 523 QNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIV 582
GN+V+QK E ++ A +V + Y CRV+Q+ LE ++ Q + I+
Sbjct: 243 IFGNYVVQKFFEYGEERHWARLVDAIIDRVPEYAFQMYACRVLQKALEKINEPLQIK-IL 301
Query: 583 DEILESAFALAQDQYGNYVTQHVLER-GKSYER--TQILSKLAGKIVQMSQHKYASNVVE 639
+I +DQ GN+V Q +E+ Y + L + + I +MS Y VV+
Sbjct: 302 SQIRHVIHRCMKDQNGNHVVQKAIEKVSPQYVQFIVDTLLESSNTIYEMSVDPYGCRVVQ 361
Query: 640 KCLEYGDTAERELLIEEILGQSEENDNLLY 669
+CLE+ ++ + +I +I + +E N Y
Sbjct: 362 RCLEHCSPSQTKPVIGQIHKRFDEIANNQY 391
Score = 148 (57.2 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 52/218 (23%), Positives = 101/218 (46%)
Query: 446 KLMTDVFGNYVIQKFFEHGSPD--QRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELH 503
K D G+ IQ+ S D ++ + +++V L ++G V+QK E E
Sbjct: 201 KFAKDQVGSRFIQQELA-SSKDRFEKDSIFDEVVSNADELVDDIFGNYVVQKFFEYGEER 259
Query: 504 QKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEF-IISAFRGQVATLSTHPYGC 562
++LV + V V+QK +E + E ++ I+S R + G
Sbjct: 260 HWARLVDAIIDRVPEYAFQMYACRVLQKALEKIN-EPLQIKILSQIRHVIHRCMKDQNGN 318
Query: 563 RVIQRVLEHCSDEQQGQCIVDEILESA---FALAQDQYGNYVTQHVLERGKSYERTQILS 619
V+Q+ +E S Q Q IVD +LES+ + ++ D YG V Q LE + ++
Sbjct: 319 HVVQKAIEKVSP-QYVQFIVDTLLESSNTIYEMSVDPYGCRVVQRCLEHCSPSQTKPVIG 377
Query: 620 KLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 657
++ + +++ ++Y + VV+ +E+G +R +++ +
Sbjct: 378 QIHKRFDEIANNQYGNYVVQHVIEHGSEEDRMVIVTRV 415
>ASPGD|ASPL0000057098 [details] [associations]
symbol:AN10071 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BN001308 GO:GO:0003723
EnsemblFungi:CADANIAT00002391 OMA:HKFSSNV Uniprot:C8VU22
Length = 650
Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
Identities = 110/300 (36%), Positives = 174/300 (58%)
Query: 364 YSGWQGQRTFEGQRTFEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQ 423
Y G R E Q S++H+ + + S + I DQHG R++Q+
Sbjct: 197 YYGNGNYRLVESQPKPVGSRRHADGDSAQLSRFNNHPIEYYRNEIYGLCKDQHGCRYLQR 256
Query: 424 KLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPL 483
KLE + ++ +F E H +LMTD FGNY+ QK E+ + +QR L K Q++ +
Sbjct: 257 KLEERNDDQLQMIFAETHSHVIELMTDPFGNYLCQKLLEYSNDEQRTVLVNKAAPQLVKI 316
Query: 484 SLQMYGCRVIQKALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIE 542
+L +G R +QK +E I +++Q V++ L HV+ V+D NGNHVIQKC+ + AEK +
Sbjct: 317 ALNQHGTRALQKMIEFISTEEQTQTVIDALKDHVVELVQDLNGNHVIQKCLNRLTAEKSQ 376
Query: 543 FIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVT 602
FI A Q T+ TH +GC V+QR ++H S Q+ + ++++I E+AFAL QD +GNYV
Sbjct: 377 FIYDAVGAQCVTVGTHRHGCCVLQRCIDHASGAQRAR-LIEQITENAFALVQDPFGNYVV 435
Query: 603 QHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE 662
Q++L+ ++ + + +I ++S+HK++SNV+EKCL D R +IEE+L E
Sbjct: 436 QYILDLAEARFTEPLCREFLSRIPKLSKHKFSSNVIEKCLRTADEEMRRQMIEEMLAGDE 495
Score = 204 (76.9 bits), Expect = 7.2e-13, P = 7.2e-13
Identities = 65/276 (23%), Positives = 126/276 (45%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKL 447
LEE Q ++ ++E D G+ Q+ LE+ + E++ + + P K+
Sbjct: 258 LEERNDDQLQMI-FAETHSHVIELMTDPFGNYLCQKLLEYSNDEQRTVLVNKAAPQLVKI 316
Query: 448 MTDVFGNYVIQKFFEH-GSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKS 506
+ G +QK E + +Q + + + L V+ L + G VIQK L + +KS
Sbjct: 317 ALNQHGTRALQKMIEFISTEEQTQTVIDALKDHVVELVQDLNGNHVIQKCLNRLTA-EKS 375
Query: 507 QLVLELDGHVMRCVRDQNGNH---VIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCR 563
Q + + G +CV H V+Q+CI+ + +I L P+G
Sbjct: 376 QFIYDAVG--AQCVTVGTHRHGCCVLQRCIDHASGAQRARLIEQITENAFALVQDPFGNY 433
Query: 564 VIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSK-LA 622
V+Q +L+ ++ + + + E L L++ ++ + V + L R Q++ + LA
Sbjct: 434 VVQYILD-LAEARFTEPLCREFLSRIPKLSKHKFSSNVIEKCLRTADEEMRRQMIEEMLA 492
Query: 623 G-KIVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 657
G ++ +M + YA+ VV+ ++Y D A R +++ I
Sbjct: 493 GDELEKMLRDSYANYVVQTAMDYADPATRARIVKYI 528
Score = 161 (61.7 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 42/184 (22%), Positives = 87/184 (47%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKL 447
L L + +Q F + + V +HG +Q+ ++H S ++ + +++ +A L
Sbjct: 367 LNRLTAEKSQ-FIYDAVGAQCVTVGTHRHGCCVLQRCIDHASGAQRARLIEQITENAFAL 425
Query: 448 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQ 507
+ D FGNYV+Q + + L + + ++ LS + VI+K L + + Q
Sbjct: 426 VQDPFGNYVVQYILDLAEARFTEPLCREFLSRIPKLSKHKFSSNVIEKCLRTADEEMRRQ 485
Query: 508 LVLE-LDGHVM-RCVRDQNGNHVIQKCIECV-PAEKIEFIISAFRGQVATLSTHPYGCRV 564
++ E L G + + +RD N+V+Q ++ PA + I+ + +L P+G R+
Sbjct: 486 MIEEMLAGDELEKMLRDSYANYVVQTAMDYADPATRAR-IVKYIEPILPSLRGTPHGRRI 544
Query: 565 IQRV 568
++
Sbjct: 545 GSKI 548
>UNIPROTKB|H0YC97 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000529846 Bgee:H0YC97 Uniprot:H0YC97
Length = 227
Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
Identities = 114/219 (52%), Positives = 149/219 (68%)
Query: 405 AGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHG 464
AG I+EFS DQHGSRFIQ KLE + E+ VF E+L A +LM DVFGNYVIQKFFE G
Sbjct: 1 AGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFG 60
Query: 465 SPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQK--SQLVLELDGHVMRCVRD 522
S +Q+ LAE++ G VL L+LQMYGCRVIQKALE I Q+ +++V ELDGHV++CV+D
Sbjct: 61 SLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKD 120
Query: 523 QNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIV 582
QNGNHV+QKCIECV + ++FII AF+GQ YG VIQ VLEH E + + IV
Sbjct: 121 QNGNHVVQKCIECVQPQSLQFIIDAFKGQ------DQYGNYVIQHVLEHGRPEDKSK-IV 173
Query: 583 DEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKL 621
EI + L+Q ++ + V + + ER ++ ++
Sbjct: 174 AEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEV 212
Score = 332 (121.9 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 78/229 (34%), Positives = 124/229 (54%)
Query: 443 HASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIEL 502
H + D G+ IQ E +P +R+ + +++ L + ++G VIQK E L
Sbjct: 3 HIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSL 62
Query: 503 HQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEK--IEFIISAFRGQVATLSTHPY 560
QK L + GHV+ G VIQK +E +P+++ I ++ G V
Sbjct: 63 EQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQN 122
Query: 561 GCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSK 620
G V+Q+ +E C Q Q I+D AF QDQYGNYV QHVLE G+ ++++I+++
Sbjct: 123 GNHVVQKCIE-CVQPQSLQFIID-----AFK-GQDQYGNYVIQHVLEHGRPEDKSKIVAE 175
Query: 621 LAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLY 669
+ G ++ +SQHK+ASNVVEKC+ + ER +LI+E+ ++ + LY
Sbjct: 176 IRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALY 224
Score = 192 (72.6 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 60/213 (28%), Positives = 101/213 (47%)
Query: 380 EDSKKHSFLEELKSSNAQKFE----LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVS 435
+D F++ LK A E ++I + VD G+ IQ+ E S E+K++
Sbjct: 9 QDQHGSRFIQ-LKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLA 67
Query: 436 VFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQR--KELAEKLVGQVLPLSLQMYGCRVI 493
+ + + H L ++G VIQK E DQ+ E+ +L G VL G V+
Sbjct: 68 LAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVV 127
Query: 494 QKALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQV 552
QK +E ++ Q Q +++ G +DQ GN+VIQ +E E I++ RG V
Sbjct: 128 QKCIECVQ-PQSLQFIIDAFKG------QDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNV 180
Query: 553 ATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEI 585
LS H + V+++ + H S ++ ++DE+
Sbjct: 181 LVLSQHKFASNVVEKCVTHASRTERA-VLIDEV 212
Score = 140 (54.3 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 41/160 (25%), Positives = 79/160 (49%)
Query: 514 GHVMRCVRDQNGNHVIQKCIE-CVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHC 572
GH+M +DQ+G+ IQ +E PAE+ + + + L +G VIQ+ E
Sbjct: 2 GHIMEFSQDQHGSRFIQLKLERATPAER-QLVFNEILQAAYQLMVDVFGNYVIQKFFEFG 60
Query: 573 SDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERT--QILSKLAGKIVQMSQ 630
S EQ+ + + I +LA YG V Q LE S ++ +++ +L G +++ +
Sbjct: 61 SLEQK-LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVK 119
Query: 631 HKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLYY 670
+ ++VV+KC+E + +I+ GQ + + ++ +
Sbjct: 120 DQNGNHVVQKCIECVQPQSLQFIIDAFKGQDQYGNYVIQH 159
>DICTYBASE|DDB_G0289987 [details] [associations]
symbol:DDB_G0289987 "Pumilio homology domain family
member 4" species:44689 "Dictyostelium discoideum" [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50103 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 dictyBase:DDB_G0289987 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0008270 GO:GO:0003723
EMBL:AAFI02000150 eggNOG:COG5099 RefSeq:XP_635942.1
ProteinModelPortal:Q54GR0 EnsemblProtists:DDB0188671 GeneID:8627424
KEGG:ddi:DDB_G0289987 InParanoid:Q54GR0 OMA:IVRISMN Uniprot:Q54GR0
Length = 1036
Score = 481 (174.4 bits), Expect = 9.1e-45, P = 9.1e-45
Identities = 101/279 (36%), Positives = 161/279 (57%)
Query: 394 SNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFG 453
+N + + G I DQHG RF+Q+KLE + +FKEV + +LMTD FG
Sbjct: 702 ANKTYTSIDQVMGSIYPLCRDQHGCRFLQKKLEESDLQLTEIIFKEVCDYMLELMTDPFG 761
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE-L 512
NY+ QK EH + QR + EK+ ++ +S+ M+G R +QK +E + ++ QL+ L
Sbjct: 762 NYLCQKLLEHCNDRQRLTIIEKVGTDIVRISMNMHGTRAVQKMIEYLTTPEQIQLIKRSL 821
Query: 513 DGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFR--GQVATLSTHPYGCRVIQRVLE 570
V+ ++D NGNHVIQKC+ + + +FI A G ++TH +GC V+QR ++
Sbjct: 822 KDSVVPLIQDLNGNHVIQKCLNKLSPQDNQFIYDAVSSDGSCIAVATHRHGCCVLQRCID 881
Query: 571 HCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQ 630
H S+ Q+ Q ++ E++ ++ L QD YGNYV Q+VL+ T++ + G + ++
Sbjct: 882 HASESQKLQ-LIQEVIANSLVLVQDPYGNYVVQYVLDLPFQGLATEMAKRFVGHVPILAT 940
Query: 631 HKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLY 669
K++SNVVEKCL D R LI+E++ + DNLL+
Sbjct: 941 QKFSSNVVEKCLHVADAITRGYLIQEVI----DYDNLLH 975
Score = 252 (93.8 bits), Expect = 9.0e-18, P = 9.0e-18
Identities = 65/262 (24%), Positives = 134/262 (51%)
Query: 394 SNAQKFELSDIAGR-IVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHAS-KLMTDV 451
++ Q+ + + G IV S++ HG+R +Q+ +E+ + E++ + K L + L+ D+
Sbjct: 773 NDRQRLTIIEKVGTDIVRISMNMHGTRAVQKMIEYLTTPEQIQLIKRSLKDSVVPLIQDL 832
Query: 452 FGNYVIQKFFEHGSPDQRKELAEKLV--GQVLPLSLQMYGCRVIQKALEVIELHQKSQLV 509
GN+VIQK SP + + + + G + ++ +GC V+Q+ ++ QK QL+
Sbjct: 833 NGNHVIQKCLNKLSPQDNQFIYDAVSSDGSCIAVATHRHGCCVLQRCIDHASESQKLQLI 892
Query: 510 LELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEF-IISAFRGQVATLSTHPYGCRVIQRV 568
E+ + + V+D GN+V+Q ++ +P + + + F G V L+T + V+++
Sbjct: 893 QEVIANSLVLVQDPYGNYVVQYVLD-LPFQGLATEMAKRFVGHVPILATQKFSSNVVEKC 951
Query: 569 LEHCSDEQQGQCIVDEILE--SAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIV 626
L H +D ++ E+++ + L QD Y NYV Q L + ++ T+++ + +
Sbjct: 952 L-HVADAITRGYLIQEVIDYDNLLHLLQDPYANYVIQTSLTISEPHQHTKLVEAIRPHLP 1010
Query: 627 QMSQHKYASNVVEKCLEYG-DT 647
+ Y + K ++ G DT
Sbjct: 1011 LLKNTPYGKRIQNKIIKEGRDT 1032
Score = 197 (74.4 bits), Expect = 8.4e-12, P = 8.4e-12
Identities = 63/281 (22%), Positives = 132/281 (46%)
Query: 387 FLEE-LKSSNAQKFEL--SDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPH 443
FL++ L+ S+ Q E+ ++ ++E D G+ Q+ LEHC+ +++++ ++V
Sbjct: 728 FLQKKLEESDLQLTEIIFKEVCDYMLELMTDPFGNYLCQKLLEHCNDRQRLTIIEKVGTD 787
Query: 444 ASKLMTDVFGNYVIQKFFEH-GSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIEL 502
++ ++ G +QK E+ +P+Q + + L V+PL + G VIQK L +
Sbjct: 788 IVRISMNMHGTRAVQKMIEYLTTPEQIQLIKRSLKDSVVPLIQDLNGNHVIQKCLNKLS- 846
Query: 503 HQKSQLVLEL---DGHVMRCVRDQNGNHVIQKCIE-CVPAEKIEFIISAFRGQVATLSTH 558
Q +Q + + DG + ++G V+Q+CI+ ++K++ I + L
Sbjct: 847 PQDNQFIYDAVSSDGSCIAVATHRHGCCVLQRCIDHASESQKLQLIQEVIANSLV-LVQD 905
Query: 559 PYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQIL 618
PYG V+Q VL+ + + + LA ++ + V + L + R ++
Sbjct: 906 PYGNYVVQYVLD-LPFQGLATEMAKRFVGHVPILATQKFSSNVVEKCLHVADAITRGYLI 964
Query: 619 SKLAG--KIVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 657
++ ++ + Q YA+ V++ L + + L+E I
Sbjct: 965 QEVIDYDNLLHLLQDPYANYVIQTSLTISEPHQHTKLVEAI 1005
>POMBASE|SPAC6G9.14 [details] [associations]
symbol:SPAC6G9.14 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC6G9.14 GO:GO:0005829 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 OrthoDB:EOG42NN7Z PIR:T39076
RefSeq:NP_594123.1 ProteinModelPortal:Q92359
EnsemblFungi:SPAC6G9.14.1 GeneID:2542056 KEGG:spo:SPAC6G9.14
NextBio:20803131 Uniprot:Q92359
Length = 681
Score = 457 (165.9 bits), Expect = 9.6e-42, P = 9.6e-42
Identities = 100/269 (37%), Positives = 150/269 (55%)
Query: 393 SSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVF 452
SS+ L + I+ F DQHG R++Q+ LE + +VF E P+ + LM D F
Sbjct: 335 SSSVASLSLQN--SNILSFCKDQHGCRYLQRLLEKKNQSHIDAVFAETHPYLAVLMVDAF 392
Query: 453 GNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIEL-HQKSQLVLE 511
GNY+ QK FEH S QR + + +++P+S M+G R +QK ++++ Q S +V
Sbjct: 393 GNYLCQKLFEHASEAQRSTFIQIIAPKLVPISFNMHGTRALQKIIDLVSSPDQISCIVNA 452
Query: 512 LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEH 571
L +V+ +D NGNHVIQKC+ E +FI A +STH +GC V+QR +H
Sbjct: 453 LRPNVVLLTKDLNGNHVIQKCLNKFSQEDCQFIFDAICEDPLDVSTHRHGCCVVQRCFDH 512
Query: 572 CSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQH 631
S Q Q +V+ I+ A L QD +GNYV Q+VLE I+S K+ +S
Sbjct: 513 ASPAQIEQ-LVEHIVPHALTLVQDAFGNYVLQYVLELNNPNHTEAIISYFLYKVRALSTQ 571
Query: 632 KYASNVVEKCLEYGDTAERELLIEEILGQ 660
K++SNV+EKC+ + A +E LI E++ +
Sbjct: 572 KFSSNVMEKCIFFAPAAIKEKLISELMDE 600
Score = 231 (86.4 bits), Expect = 8.8e-16, P = 8.8e-16
Identities = 66/263 (25%), Positives = 127/263 (48%)
Query: 393 SSNAQKFE-LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL-PHASKLMTD 450
+S AQ+ + IA ++V S + HG+R +Q+ ++ S+ +++S L P+ L D
Sbjct: 404 ASEAQRSTFIQIIAPKLVPISFNMHGTRALQKIIDLVSSPDQISCIVNALRPNVVLLTKD 463
Query: 451 VFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVL 510
+ GN+VIQK S + + + + + L +S +GC V+Q+ + Q QLV
Sbjct: 464 LNGNHVIQKCLNKFSQEDCQFIFDAICEDPLDVSTHRHGCCVVQRCFDHASPAQIEQLVE 523
Query: 511 ELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLE 570
+ H + V+D GN+V+Q +E E IIS F +V LST + V+++ +
Sbjct: 524 HIVPHALTLVQDAFGNYVLQYVLELNNPNHTEAIISYFLYKVRALSTQKFSSNVMEKCIF 583
Query: 571 HCSDEQQGQCIVDEILESAFA--LAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQM 628
+ + ++ E+++ L +D + NYV Q L+ +R +++ ++ I +
Sbjct: 584 FAPAAIKEK-LISELMDEKHLPKLLRDSFANYVIQTALDNASVKQRAELVERIKPLIPSI 642
Query: 629 SQHKYASNVVEKCLEYGDTAERE 651
++ K LE + +E
Sbjct: 643 KNTPCGRRILSK-LERRHPSSKE 664
Score = 187 (70.9 bits), Expect = 5.6e-11, P = 5.6e-11
Identities = 41/172 (23%), Positives = 88/172 (51%)
Query: 409 VEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQ 468
++ S +HG +Q+ +H S + + + ++PHA L+ D FGNYV+Q E +P+
Sbjct: 494 LDVSTHRHGCCVVQRCFDHASPAQIEQLVEHIVPHALTLVQDAFGNYVLQYVLELNNPNH 553
Query: 469 RKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL--DGHVMRCVRDQNGN 526
+ + + +V LS Q + V++K + K +L+ EL + H+ + +RD N
Sbjct: 554 TEAIISYFLYKVRALSTQKFSSNVMEKCIFFAPAAIKEKLISELMDEKHLPKLLRDSFAN 613
Query: 527 HVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRV-LEHCSDEQQ 577
+VIQ ++ ++ ++ + + ++ P G R++ ++ H S +++
Sbjct: 614 YVIQTALDNASVKQRAELVERIKPLIPSIKNTPCGRRILSKLERRHPSSKEK 665
Score = 160 (61.4 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 53/249 (21%), Positives = 112/249 (44%)
Query: 413 VDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEH-GSPDQRKE 471
VD G+ Q+ EH S ++ + + + P + ++ G +QK + SPDQ
Sbjct: 389 VDAFGNYLCQKLFEHASEAQRSTFIQIIAPKLVPISFNMHGTRALQKIIDLVSSPDQISC 448
Query: 472 LAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQ 530
+ L V+ L+ + G VIQK L + Q + + + + ++G V+Q
Sbjct: 449 IVNALRPNVVLLTKDLNGNHVIQKCLNKFS-QEDCQFIFDAICEDPLDVSTHRHGCCVVQ 507
Query: 531 KCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAF 590
+C + +IE ++ TL +G V+Q VLE ++ + I+ L
Sbjct: 508 RCFDHASPAQIEQLVEHIVPHALTLVQDAFGNYVLQYVLE-LNNPNHTEAIISYFLYKVR 566
Query: 591 ALAQDQYGNYVTQHVLERGKSYERTQILSKLAGK--IVQMSQHKYASNVVEKCLEYGDTA 648
AL+ ++ + V + + + + +++S+L + + ++ + +A+ V++ L+
Sbjct: 567 ALSTQKFSSNVMEKCIFFAPAAIKEKLISELMDEKHLPKLLRDSFANYVIQTALDNASVK 626
Query: 649 ERELLIEEI 657
+R L+E I
Sbjct: 627 QRAELVERI 635
>DICTYBASE|DDB_G0279557 [details] [associations]
symbol:DDB_G0279557 "pumilio RNA-binding
region-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 dictyBase:DDB_G0279557 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AAFI02000031 eggNOG:COG5099 RefSeq:XP_641698.1
ProteinModelPortal:Q54WL9 EnsemblProtists:DDB0305068 GeneID:8622107
KEGG:ddi:DDB_G0279557 InParanoid:Q54WL9 OMA:STHAANS Uniprot:Q54WL9
Length = 782
Score = 442 (160.7 bits), Expect = 1.1e-40, Sum P(2) = 1.1e-40
Identities = 90/268 (33%), Positives = 154/268 (57%)
Query: 391 LKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVS-VFKEVLPHASKLMT 449
L + + + L +I G+I + Q G RF+Q+KLE E V+ +F EV H ++LM
Sbjct: 458 LNNQDPKCTSLEEITGQIYHLTKYQAGCRFLQKKLEEKPDSEHVTLIFNEVFDHLNELMI 517
Query: 450 DVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLV 509
D +G Y+I + ++ +QR+++ +K+ V + +YG IQK L+ + Q ++
Sbjct: 518 DPYGQYLIPQLMKYCDNNQRRQIVDKIAPSVETFACHVYGIHGIQKLLQYLSPDQVESII 577
Query: 510 LELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVL 569
+ G V++ +D GN++IQ ++ E +F+ A G + + TH GC V+ R +
Sbjct: 578 ASIKGKVIQLSKDNKGNYLIQSFLKQFSPEVNQFVCDAIMGNIEEICTHKVGCTVVNRCI 637
Query: 570 EHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMS 629
++ + EQ + +VD+I E + L QDQ+GNYV QH+L + K+Y I+S L I ++S
Sbjct: 638 DNANPEQLEK-LVDKITEHSLKLVQDQFGNYVVQHLLSKNKAYSSKLIVS-LKDNIAELS 695
Query: 630 QHKYASNVVEKCLEYGDTAERELLIEEI 657
K++SNV+EKCL+ DT EL+I+ +
Sbjct: 696 IQKFSSNVIEKCLQLADTPTYELIIKAL 723
Score = 243 (90.6 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
Identities = 62/251 (24%), Positives = 126/251 (50%)
Query: 395 NAQKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFG 453
N Q+ ++ D IA + F+ +G IQ+ L++ S ++ S+ + +L D G
Sbjct: 534 NNQRRQIVDKIAPSVETFACHVYGIHGIQKLLQYLSPDQVESIIASIKGKVIQLSKDNKG 593
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD 513
NY+IQ F + SP+ + + + ++G + + GC V+ + ++ Q +LV ++
Sbjct: 594 NYLIQSFLKQFSPEVNQFVCDAIMGNIEEICTHKVGCTVVNRCIDNANPEQLEKLVDKIT 653
Query: 514 GHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCS 573
H ++ V+DQ GN+V+Q + A + I+S + +A LS + VI++ L+ +
Sbjct: 654 EHSLKLVQDQFGNYVVQHLLSKNKAYSSKLIVS-LKDNIAELSIQKFSSNVIEKCLQ-LA 711
Query: 574 DEQQGQCIVDEILES-AFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHK 632
D + I+ + E+ +L QD+Y N+V Q L+ + +++ + I Q+
Sbjct: 712 DTPTYELIIKALTEADILSLLQDKYANFVIQTALDVSNDTQHAKLVKIIVPYIHQIKT-P 770
Query: 633 YASNVVEKCLE 643
Y ++ +K L+
Sbjct: 771 YVIHIQKKILQ 781
Score = 190 (71.9 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 48/189 (25%), Positives = 90/189 (47%)
Query: 474 EKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVL-ELDGHVMRCVRDQNGNHVIQKC 532
E++ GQ+ L+ GCR +QK LE + L+ E+ H+ + D G ++I +
Sbjct: 469 EEITGQIYHLTKYQAGCRFLQKKLEEKPDSEHVTLIFNEVFDHLNELMIDPYGQYLIPQL 528
Query: 533 IECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFAL 592
++ + I+ V T + H YG IQ++L++ S +Q + I+ I L
Sbjct: 529 MKYCDNNQRRQIVDKIAPSVETFACHVYGIHGIQKLLQYLSPDQV-ESIIASIKGKVIQL 587
Query: 593 AQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAEREL 652
++D GNY+ Q L++ + + G I ++ HK VV +C++ + + E
Sbjct: 588 SKDNKGNYLIQSFLKQFSPEVNQFVCDAIMGNIEEICTHKVGCTVVNRCIDNANPEQLEK 647
Query: 653 LIEEILGQS 661
L+++I S
Sbjct: 648 LVDKITEHS 656
Score = 146 (56.5 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 38/154 (24%), Positives = 76/154 (49%)
Query: 511 ELDGHVMRCVRDQNGNHVIQKCIECVP-AEKIEFIISAFRGQVATLSTHPYGCRVIQRVL 569
E+ G + + Q G +QK +E P +E + I + + L PYG +I +++
Sbjct: 470 EITGQIYHLTKYQAGCRFLQKKLEEKPDSEHVTLIFNEVFDHLNELMIDPYGQYLIPQLM 529
Query: 570 EHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMS 629
++C + Q+ Q IVD+I S A YG + Q +L+ + I++ + GK++Q+S
Sbjct: 530 KYCDNNQRRQ-IVDKIAPSVETFACHVYGIHGIQKLLQYLSPDQVESIIASIKGKVIQLS 588
Query: 630 QHKYASNVVEKCLEYGDTAERELLIEEILGQSEE 663
+ + +++ L+ + + + I+G EE
Sbjct: 589 KDNKGNYLIQSFLKQFSPEVNQFVCDAIMGNIEE 622
Score = 51 (23.0 bits), Expect = 1.1e-40, Sum P(2) = 1.1e-40
Identities = 29/114 (25%), Positives = 41/114 (35%)
Query: 233 PFVDPLHMQYFQHPFGDAYNASVQHRLASSGVNGALADPSSKKEPIVAAYMGDQNLQSSL 292
P Q Q P G ++S L SSG G+++ SS P + N Q+
Sbjct: 210 PLSSQQQTQQQQQPIGHPSSSSTPSSLNSSG--GSISTSSSTSSPATSTNT-TPNTQA-- 264
Query: 293 NGGPSISNPRKXXXXXXXXXXXXXXXXXXXQFP--TSPIASP-VLPSSPVGSTS 343
P +PRK P +S I SP ++P+ STS
Sbjct: 265 ---P-FKSPRKLNTSGSGLTSIIPPGFSNESSPNTSSNIVSPSTTTTTPLSSTS 314
Score = 41 (19.5 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 179 GYPSQGPVPMPFDATSGS-SFNIRTTSVST 207
G+PS P +++ GS S + T+S +T
Sbjct: 225 GHPSSSSTPSSLNSSGGSISTSSSTSSPAT 254
Score = 38 (18.4 bits), Expect = 2.4e-39, Sum P(2) = 2.4e-39
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 183 QGPVPMPFDATSGSSFNIRTTSVST 207
Q P+ P +++ SS N S+ST
Sbjct: 221 QQPIGHPSSSSTPSSLNSSGGSIST 245
>TAIR|locus:2015036 [details] [associations]
symbol:PUM8 "pumilio 8" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0009507
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AC073942 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000176806 IPI:IPI00535613 PIR:B86355 RefSeq:NP_173643.1
UniGene:At.51720 ProteinModelPortal:Q9LM20 SMR:Q9LM20 PRIDE:Q9LM20
EnsemblPlants:AT1G22240.1 GeneID:838829 KEGG:ath:AT1G22240
TAIR:At1g22240 InParanoid:Q9LM20 OMA:FCIDIAT PhylomeDB:Q9LM20
ProtClustDB:CLSN2914398 Genevestigator:Q9LM20 Uniprot:Q9LM20
Length = 515
Score = 428 (155.7 bits), Expect = 5.7e-40, P = 5.7e-40
Identities = 96/272 (35%), Positives = 159/272 (58%)
Query: 393 SSNAQKF--ELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTD 450
SSN + ++S+ G + + DQHG RF+Q E SA + + +F EV+PH +LM D
Sbjct: 186 SSNPNESLPKVSEFQGYVYFMAKDQHGCRFLQWIFEDGSALDALVIFSEVIPHVVELMMD 245
Query: 451 VFGNYVIQKFFEHGSPDQRKELAEKLV---GQVLPLSLQMYGCRVIQKALEVIELHQKSQ 507
FGNY++QK + + +QR ++ + GQ++ +SL YG RV+Q+ +E I+ ++
Sbjct: 246 PFGNYLMQKLLDVCNEEQRTQIILMVTSEPGQLIRISLNAYGTRVVQRLVESIKTRKQIS 305
Query: 508 LVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
LV L + +RD NGNHVIQ+C++C+ E EFI ++TH +GC V+Q
Sbjct: 306 LVKSALRPGFLNLIRDLNGNHVIQRCLQCLSTEDNEFIFEDATKFCIDIATHRHGCCVLQ 365
Query: 567 RVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIV 626
+ + + S Q+ + +V EI ++ LAQD YGNY Q VLE +L++L G V
Sbjct: 366 KCIAYSSGLQREK-LVTEISRNSLFLAQDPYGNYAVQFVLELRDFSAIAAMLAQLKGHYV 424
Query: 627 QMSQHKYASNVVEKCLEYGDTAERELLIEEIL 658
++S K++S++VE+CL + + R ++ E++
Sbjct: 425 ELSMQKFSSHMVERCLTHCPES-RPQIVRELI 455
Score = 219 (82.2 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 53/203 (26%), Positives = 102/203 (50%)
Query: 406 GRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL-PHASKLMTDVFGNYVIQKFFEHG 464
G+++ S++ +G+R +Q+ +E +++S+ K L P L+ D+ GN+VIQ+ +
Sbjct: 276 GQLIRISLNAYGTRVVQRLVESIKTRKQISLVKSALRPGFLNLIRDLNGNHVIQRCLQCL 335
Query: 465 SPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQN 524
S + + + E + ++ +GC V+QK + Q+ +LV E+ + + +D
Sbjct: 336 STEDNEFIFEDATKFCIDIATHRHGCCVLQKCIAYSSGLQREKLVTEISRNSLFLAQDPY 395
Query: 525 GNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDE 584
GN+ +Q +E I +++ +G LS + +++R L HC E + Q + +
Sbjct: 396 GNYAVQFVLELRDFSAIAAMLAQLKGHYVELSMQKFSSHMVERCLTHCP-ESRPQIVREL 454
Query: 585 ILESAF-ALAQDQYGNYVTQHVL 606
I F L QD Y N+V Q L
Sbjct: 455 ISVPHFDILIQDPYANFVIQAAL 477
>TAIR|locus:2167111 [details] [associations]
symbol:PUM12 "pumilio 12" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005634 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB019234 eggNOG:COG5099 HSSP:Q14671 IPI:IPI00534318
RefSeq:NP_200462.2 UniGene:At.55587 ProteinModelPortal:Q9LVC3
SMR:Q9LVC3 STRING:Q9LVC3 EnsemblPlants:AT5G56510.1 GeneID:835752
KEGG:ath:AT5G56510 TAIR:At5g56510 HOGENOM:HOG000176955
InParanoid:Q9LVC3 OMA:NDIEMIF PhylomeDB:Q9LVC3
Genevestigator:Q9LVC3 Uniprot:Q9LVC3
Length = 596
Score = 426 (155.0 bits), Expect = 1.8e-38, P = 1.8e-38
Identities = 97/315 (30%), Positives = 166/315 (52%)
Query: 351 MRLPQGLNRNTGIYSGWQGQRTFEGQRTFEDSKKHSFLEELK--SSNAQKFE-LSDIAGR 407
MR LN I G G + G+ ++ L S QK+ +++ G+
Sbjct: 223 MRSQMDLNTAKVIKYG-AGDESQNGRLWLQNQLNEDLTMSLNNLSLQPQKYNSIAEARGK 281
Query: 408 IVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPD 467
I + DQHG RF+Q+ + +F E++ + S+LM D FGNY++QK E + D
Sbjct: 282 IYYLAKDQHGCRFLQRIFSEKDGNDIEMIFNEIIDYISELMMDPFGNYLVQKLLEVCNED 341
Query: 468 QRKELAEKLV---GQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH-VMRCVRDQ 523
QR ++ + G ++ +S M+G R +QK +E + ++ +++ H ++ +++
Sbjct: 342 QRMQIVHSITRKPGLLIKISCDMHGTRAVQKIVETAKREEEISIIISALKHGIVHLIKNV 401
Query: 524 NGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVD 583
NGNHV+Q+C++ + +F+ A L+T +GC V+Q+ L + EQ+ Q +V
Sbjct: 402 NGNHVVQRCLQYLLPYCGKFLFEAAITHCVELATDRHGCCVLQKCLGYSEGEQK-QHLVS 460
Query: 584 EILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLE 643
EI +A L+QD +GNYV Q+V E + +IL +L G ++S K +SNVVEKCL+
Sbjct: 461 EIASNALLLSQDPFGNYVLQYVFELQLQWATFEILEQLEGNYTELSMQKCSSNVVEKCLK 520
Query: 644 YGDTAERELLIEEIL 658
D R +I E++
Sbjct: 521 LADDKHRARIIRELI 535
Score = 246 (91.7 bits), Expect = 1.5e-17, P = 1.5e-17
Identities = 58/185 (31%), Positives = 100/185 (54%)
Query: 478 GQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH-VMRCVRDQNGNHVIQKCIECV 536
G ++ +S M+G R +QK +E + ++ +++ H ++ +++ NGNHV+Q+C++ +
Sbjct: 355 GLLIKISCDMHGTRAVQKIVETAKREEEISIIISALKHGIVHLIKNVNGNHVVQRCLQYL 414
Query: 537 PAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQ 596
+F+ A L+T +GC V+Q+ L + EQ+ Q +V EI +A L+QD
Sbjct: 415 LPYCGKFLFEAAITHCVELATDRHGCCVLQKCLGYSEGEQK-QHLVSEIASNALLLSQDP 473
Query: 597 YGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLE------------- 643
+GNYV Q+V E + +IL +L G ++S K +SNVVEKCL+
Sbjct: 474 FGNYVLQYVFELQLQWATFEILEQLEGNYTELSMQKCSSNVVEKCLKLADDKHRARIIRE 533
Query: 644 ---YG 645
YG
Sbjct: 534 LINYG 538
Score = 240 (89.5 bits), Expect = 6.9e-17, P = 6.9e-17
Identities = 66/238 (27%), Positives = 115/238 (48%)
Query: 406 GRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHAS-KLMTDVFGNYVIQKFFEHG 464
G +++ S D HG+R +Q+ +E EE++S+ L H L+ +V GN+V+Q+ ++
Sbjct: 355 GLLIKISCDMHGTRAVQKIVETAKREEEISIIISALKHGIVHLIKNVNGNHVVQRCLQYL 414
Query: 465 SPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQN 524
P K L E + + L+ +GC V+QK L E QK LV E+ + + +D
Sbjct: 415 LPYCGKFLFEAAITHCVELATDRHGCCVLQKCLGYSEGEQKQHLVSEIASNALLLSQDPF 474
Query: 525 GNHVIQKCIECVPAEKIEF-IISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVD 583
GN+V+Q E + + F I+ G LS V+++ L+ D+ + + I+
Sbjct: 475 GNYVLQYVFE-LQLQWATFEILEQLEGNYTELSMQKCSSNVVEKCLKLADDKHRAR-IIR 532
Query: 584 EILESAFALAQ---DQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVV 638
E++ L Q D YGNYV Q L++ K ++ + I + + Y V+
Sbjct: 533 ELINYG-RLDQVMLDPYGNYVIQAALKQSKGNVHALLVDAIKLNISSLRTNPYGKKVL 589
Score = 199 (75.1 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 49/170 (28%), Positives = 87/170 (51%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
KF VE + D+HG +Q+ L + E+K + E+ +A L D FGNYV+
Sbjct: 420 KFLFEAAITHCVELATDRHGCCVLQKCLGYSEGEQKQHLVSEIASNALLLSQDPFGNYVL 479
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD--GH 515
Q FE E+ E+L G LS+Q V++K L++ + +++++ EL G
Sbjct: 480 QYVFELQLQWATFEILEQLEGNYTELSMQKCSSNVVEKCLKLADDKHRARIIRELINYGR 539
Query: 516 VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
+ + + D GN+VIQ ++ ++ A + +++L T+PYG +V+
Sbjct: 540 LDQVMLDPYGNYVIQAALKQSKGNVHALLVDAIKLNISSLRTNPYGKKVL 589
>TAIR|locus:2194699 [details] [associations]
symbol:PUM7 "pumilio 7" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0003729 "mRNA binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0009507 GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AC012680 eggNOG:COG5099 HSSP:Q14671 IPI:IPI00517199 PIR:H96810
RefSeq:NP_177940.2 UniGene:At.52554 ProteinModelPortal:Q9C9R6
SMR:Q9C9R6 EnsemblPlants:AT1G78160.1 GeneID:844152
KEGG:ath:AT1G78160 TAIR:At1g78160 HOGENOM:HOG000176806
InParanoid:Q9C9R6 OMA:REYSAYS PhylomeDB:Q9C9R6
Genevestigator:Q9C9R6 Uniprot:Q9C9R6
Length = 650
Score = 420 (152.9 bits), Expect = 3.8e-37, P = 3.8e-37
Identities = 90/262 (34%), Positives = 156/262 (59%)
Query: 401 LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKF 460
+ DI G + + DQHG RF+Q+ + ++ + + +F EV+ H +LM D FGNY++QK
Sbjct: 331 MCDIQGYVYLMAKDQHGCRFLQRIFDEGTSVDAMIIFNEVIAHVVELMMDPFGNYLMQKL 390
Query: 461 FEHGSPDQRKEL---AEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLV-LELDGHV 516
+ + +QR ++ A + GQ++ +SL YG RV+Q+ +E I ++ LV L L
Sbjct: 391 LDVCTEEQRTQIVLVATEEPGQLIRISLNAYGTRVVQRLVETIRSGKQISLVKLALRPGF 450
Query: 517 MRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQ 576
+ ++D NGNHVIQ+C++C+ E +FI A ++TH +GC V+Q+ + + S Q
Sbjct: 451 LDLIKDLNGNHVIQRCLQCLSTEDNKFIFDAATKFCTEIATHRHGCCVLQKCIAY-SMRQ 509
Query: 577 QGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASN 636
Q + ++ EI ++ LAQD +GNY Q V+E +L++L G VQ+S K++S+
Sbjct: 510 QREKLIAEISRNSLLLAQDPFGNYAVQFVIELRIPSAVAMMLAQLKGHYVQLSMQKFSSH 569
Query: 637 VVEKCLEYGDTAERELLIEEIL 658
+VE+CL + + R ++ E++
Sbjct: 570 MVERCLMHCPES-RPQIVRELV 590
Score = 213 (80.0 bits), Expect = 7.5e-14, P = 7.5e-14
Identities = 52/207 (25%), Positives = 103/207 (49%)
Query: 406 GRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL-PHASKLMTDVFGNYVIQKFFEHG 464
G+++ S++ +G+R +Q+ +E + +++S+ K L P L+ D+ GN+VIQ+ +
Sbjct: 411 GQLIRISLNAYGTRVVQRLVETIRSGKQISLVKLALRPGFLDLIKDLNGNHVIQRCLQCL 470
Query: 465 SPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQN 524
S + K + + ++ +GC V+QK + Q+ +L+ E+ + + +D
Sbjct: 471 STEDNKFIFDAATKFCTEIATHRHGCCVLQKCIAYSMRQQREKLIAEISRNSLLLAQDPF 530
Query: 525 GNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDE 584
GN+ +Q IE + +++ +G LS + +++R L HC E + Q + +
Sbjct: 531 GNYAVQFVIELRIPSAVAMMLAQLKGHYVQLSMQKFSSHMVERCLMHCP-ESRPQIVREL 589
Query: 585 ILESAF-ALAQDQYGNYVTQHVLERGK 610
+ F L QD Y N+V Q L K
Sbjct: 590 VSVPHFDQLLQDPYANFVIQAALAATK 616
Score = 131 (51.2 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 42/180 (23%), Positives = 79/180 (43%)
Query: 393 SSNAQKFELSDIAGRI-VEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDV 451
S+ KF + D A + E + +HG +Q+ + + +++ + E+ ++ L D
Sbjct: 471 STEDNKF-IFDAATKFCTEIATHRHGCCVLQKCIAYSMRQQREKLIAEISRNSLLLAQDP 529
Query: 452 FGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE 511
FGNY +Q E P + +L G + LS+Q + ++++ L + Q+V E
Sbjct: 530 FGNYAVQFVIELRIPSAVAMMLAQLKGHYVQLSMQKFSSHMVERCLMHCP-ESRPQIVRE 588
Query: 512 LDG--HVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVL 569
L H + ++D N VIQ + ++ R + L +PY R+ R L
Sbjct: 589 LVSVPHFDQLLQDPYANFVIQAALAATKGPLHASLVEVIRPH-SILRNNPYCKRIFSRNL 647
>GENEDB_PFALCIPARUM|PFD0825c [details] [associations]
symbol:PFD0825c "RNA-binding protein of
pumilio/mpt5 family, putative" species:5833 "Plasmodium falciparum"
[GO:0017148 "negative regulation of translation" evidence=ISS]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0017148 GO:GO:0003723 EMBL:AL844503
HOGENOM:HOG000225260 RefSeq:XP_001351478.1
ProteinModelPortal:Q8I1R7 EnsemblProtists:PFD0825c:mRNA
GeneID:812518 KEGG:pfa:PFD0825c EuPathDB:PlasmoDB:PF3D7_0417100
OMA:IDHINDI ProtClustDB:CLSZ2500510 Uniprot:Q8I1R7
Length = 514
Score = 401 (146.2 bits), Expect = 6.8e-37, P = 6.8e-37
Identities = 96/322 (29%), Positives = 167/322 (51%)
Query: 349 HEMRLPQGLNRNTGIYSGWQGQRTFEGQRTFE-DSKKHSFLEELKSSNAQKFELSDIAGR 407
H + P+ + N Y Q + F+ D +KH+ EE ++S +
Sbjct: 145 HYEKSPEQVIDNKRYYENLPEQVIINKKDMFKNDEEKHN--EE----GQVHIDMSKVMYD 198
Query: 408 IVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPD 467
I ++G +I +KL+ + EEK + +L L D++G+YV Q F+
Sbjct: 199 IYFLCFHKNGCEYIIKKLKEDNKEEKEIILNSLLIDTMSLCPDIYGSYVAQSIFDLKDEK 258
Query: 468 QRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNH 527
++ ++ + L+L YGCR+IQK+LE + K ++ EL +++ + QNGNH
Sbjct: 259 YKERFTDEFLKHTSFLTLHTYGCRLIQKSLESLSDEYKCKIFKELQEDLIKYICHQNGNH 318
Query: 528 VIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILE 587
VIQKC+E +P I+ II+ + LS+H YGCR++QR+ E +EQQ + ++I++
Sbjct: 319 VIQKCVEVLPCSYIDIIINIIEEYLPFLSSHAYGCRIVQRIYE-IGNEQQINRLNEQIIK 377
Query: 588 SAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDT 647
L +++YGNYV Q E R I ++ I ++S HKYA N++EK L +
Sbjct: 378 KIH-LIKNRYGNYVIQKCFEHSDDNIRFIITDEIVNDIYKLSSHKYACNIIEKILLKKEY 436
Query: 648 AERELLIEEILGQ-SEENDNLL 668
++ +I++I+ S+ DN++
Sbjct: 437 KYKKKIIKKIVNDISDGKDNII 458
Score = 239 (89.2 bits), Expect = 6.2e-17, P = 6.2e-17
Identities = 66/231 (28%), Positives = 120/231 (51%)
Query: 416 HGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEK 475
+G R IQ+ LE S E K +FKE+ K + GN+VIQK E P ++
Sbjct: 279 YGCRLIQKSLESLSDEYKCKIFKELQEDLIKYICHQNGNHVIQKCVEV-LPCSYIDIIIN 337
Query: 476 LVGQVLP-LSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIE 534
++ + LP LS YGCR++Q+ E+ Q ++L ++ + ++++ GN+VIQKC E
Sbjct: 338 IIEEYLPFLSSHAYGCRIVQRIYEIGNEQQINRLNEQIIKKI-HLIKNRYGNYVIQKCFE 396
Query: 535 CVPAEKIEFIIS-AFRGQVATLSTHPYGCRVIQRVL---EHCSDEQQGQCIVDEILE--- 587
+ I FII+ + LS+H Y C +I+++L E+ ++ + IV++I +
Sbjct: 397 HSD-DNIRFIITDEIVNDIYKLSSHKYACNIIEKILLKKEYKYKKKIIKKIVNDISDGKD 455
Query: 588 SAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVV 638
+ + +D YGN++ Q +L + ER I+ + + ++ Y ++
Sbjct: 456 NIINICKDCYGNFMMQKLLTTCRKKERNFIIKTIIENLDKLKDETYGKYIL 506
Score = 159 (61.0 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 41/160 (25%), Positives = 79/160 (49%)
Query: 416 HGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEK 475
+G R +Q+ E E++++ E + L+ + +GNYVIQK FEH + R + ++
Sbjct: 351 YGCRIVQRIYE-IGNEQQINRLNEQIIKKIHLIKNRYGNYVIQKCFEHSDDNIRFIITDE 409
Query: 476 LVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL-----DG--HVMRCVRDQNGNHV 528
+V + LS Y C +I+K L E K +++ ++ DG +++ +D GN +
Sbjct: 410 IVNDIYKLSSHKYACNIIEKILLKKEYKYKKKIIKKIVNDISDGKDNIINICKDCYGNFM 469
Query: 529 IQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRV 568
+QK + ++ FII + L YG +++ +
Sbjct: 470 MQKLLTTCRKKERNFIIKTIIENLDKLKDETYGKYILRAI 509
>UNIPROTKB|Q8I1R7 [details] [associations]
symbol:PFD0825c "RNA-binding protein of pumilio/mpt5
family, putative" species:36329 "Plasmodium falciparum 3D7"
[GO:0017148 "negative regulation of translation" evidence=ISS]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0017148 GO:GO:0003723 EMBL:AL844503
HOGENOM:HOG000225260 RefSeq:XP_001351478.1
ProteinModelPortal:Q8I1R7 EnsemblProtists:PFD0825c:mRNA
GeneID:812518 KEGG:pfa:PFD0825c EuPathDB:PlasmoDB:PF3D7_0417100
OMA:IDHINDI ProtClustDB:CLSZ2500510 Uniprot:Q8I1R7
Length = 514
Score = 401 (146.2 bits), Expect = 6.8e-37, P = 6.8e-37
Identities = 96/322 (29%), Positives = 167/322 (51%)
Query: 349 HEMRLPQGLNRNTGIYSGWQGQRTFEGQRTFE-DSKKHSFLEELKSSNAQKFELSDIAGR 407
H + P+ + N Y Q + F+ D +KH+ EE ++S +
Sbjct: 145 HYEKSPEQVIDNKRYYENLPEQVIINKKDMFKNDEEKHN--EE----GQVHIDMSKVMYD 198
Query: 408 IVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPD 467
I ++G +I +KL+ + EEK + +L L D++G+YV Q F+
Sbjct: 199 IYFLCFHKNGCEYIIKKLKEDNKEEKEIILNSLLIDTMSLCPDIYGSYVAQSIFDLKDEK 258
Query: 468 QRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNH 527
++ ++ + L+L YGCR+IQK+LE + K ++ EL +++ + QNGNH
Sbjct: 259 YKERFTDEFLKHTSFLTLHTYGCRLIQKSLESLSDEYKCKIFKELQEDLIKYICHQNGNH 318
Query: 528 VIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILE 587
VIQKC+E +P I+ II+ + LS+H YGCR++QR+ E +EQQ + ++I++
Sbjct: 319 VIQKCVEVLPCSYIDIIINIIEEYLPFLSSHAYGCRIVQRIYE-IGNEQQINRLNEQIIK 377
Query: 588 SAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDT 647
L +++YGNYV Q E R I ++ I ++S HKYA N++EK L +
Sbjct: 378 KIH-LIKNRYGNYVIQKCFEHSDDNIRFIITDEIVNDIYKLSSHKYACNIIEKILLKKEY 436
Query: 648 AERELLIEEILGQ-SEENDNLL 668
++ +I++I+ S+ DN++
Sbjct: 437 KYKKKIIKKIVNDISDGKDNII 458
Score = 239 (89.2 bits), Expect = 6.2e-17, P = 6.2e-17
Identities = 66/231 (28%), Positives = 120/231 (51%)
Query: 416 HGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEK 475
+G R IQ+ LE S E K +FKE+ K + GN+VIQK E P ++
Sbjct: 279 YGCRLIQKSLESLSDEYKCKIFKELQEDLIKYICHQNGNHVIQKCVEV-LPCSYIDIIIN 337
Query: 476 LVGQVLP-LSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIE 534
++ + LP LS YGCR++Q+ E+ Q ++L ++ + ++++ GN+VIQKC E
Sbjct: 338 IIEEYLPFLSSHAYGCRIVQRIYEIGNEQQINRLNEQIIKKI-HLIKNRYGNYVIQKCFE 396
Query: 535 CVPAEKIEFIIS-AFRGQVATLSTHPYGCRVIQRVL---EHCSDEQQGQCIVDEILE--- 587
+ I FII+ + LS+H Y C +I+++L E+ ++ + IV++I +
Sbjct: 397 HSD-DNIRFIITDEIVNDIYKLSSHKYACNIIEKILLKKEYKYKKKIIKKIVNDISDGKD 455
Query: 588 SAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVV 638
+ + +D YGN++ Q +L + ER I+ + + ++ Y ++
Sbjct: 456 NIINICKDCYGNFMMQKLLTTCRKKERNFIIKTIIENLDKLKDETYGKYIL 506
Score = 159 (61.0 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 41/160 (25%), Positives = 79/160 (49%)
Query: 416 HGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEK 475
+G R +Q+ E E++++ E + L+ + +GNYVIQK FEH + R + ++
Sbjct: 351 YGCRIVQRIYE-IGNEQQINRLNEQIIKKIHLIKNRYGNYVIQKCFEHSDDNIRFIITDE 409
Query: 476 LVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL-----DG--HVMRCVRDQNGNHV 528
+V + LS Y C +I+K L E K +++ ++ DG +++ +D GN +
Sbjct: 410 IVNDIYKLSSHKYACNIIEKILLKKEYKYKKKIIKKIVNDISDGKDNIINICKDCYGNFM 469
Query: 529 IQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRV 568
+QK + ++ FII + L YG +++ +
Sbjct: 470 MQKLLTTCRKKERNFIIKTIIENLDKLKDETYGKYILRAI 509
>UNIPROTKB|H0YDC5 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000525997 Uniprot:H0YDC5
Length = 217
Score = 400 (145.9 bits), Expect = 8.7e-37, P = 8.7e-37
Identities = 86/220 (39%), Positives = 131/220 (59%)
Query: 450 DVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLV 509
D G+ IQ E +P +R+ + +++ L + ++G VIQK E L QK L
Sbjct: 6 DQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALA 65
Query: 510 LELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVL 569
+ GHV+ G VIQK +E +P+++ QV LSTHPYGCRVIQR+L
Sbjct: 66 ERIRGHVLSLALQMYGCRVIQKALEFIPSDQ----------QVFALSTHPYGCRVIQRIL 115
Query: 570 EHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMS 629
EHC +Q I++E+ + L QDQYGNYV QHVLE G+ ++++I++++ G ++ +S
Sbjct: 116 EHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLS 174
Query: 630 QHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLY 669
QHK+ASNVVEKC+ + ER +LI+E+ ++ + LY
Sbjct: 175 QHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALY 214
Score = 375 (137.1 bits), Expect = 5.3e-34, P = 5.3e-34
Identities = 93/213 (43%), Positives = 122/213 (57%)
Query: 410 EFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQR 469
EFS DQHGSRFIQ KLE + E+ VF E+L A +LM DVFGNYVIQKFFE GS +Q+
Sbjct: 2 EFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQK 61
Query: 470 KELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVI 529
LAE++ G VL L+LQMYGCRVIQKALE I Q+ V L H C VI
Sbjct: 62 LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ---VFALSTHPYGC-------RVI 111
Query: 530 QKCIE-CVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILES 588
Q+ +E C+P + + I+ L YG VIQ VLEH E + + IV EI +
Sbjct: 112 QRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSK-IVAEIRGN 169
Query: 589 AFALAQDQYGNYVTQHVLERGKSYERTQILSKL 621
L+Q ++ + V + + ER ++ ++
Sbjct: 170 VLVLSQHKFASNVVEKCVTHASRTERAVLIDEV 202
Score = 217 (81.4 bits), Expect = 7.7e-17, P = 7.7e-17
Identities = 65/210 (30%), Positives = 100/210 (47%)
Query: 380 EDSKKHSFLEELKSSNAQKFE----LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVS 435
+D F++ LK A E ++I + VD G+ IQ+ E S E+K++
Sbjct: 5 QDQHGSRFIQ-LKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLA 63
Query: 436 VFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQK 495
+ + + H L ++G VIQK E DQ QV LS YGCRVIQ+
Sbjct: 64 LAERIRGHVLSLALQMYGCRVIQKALEFIPSDQ----------QVFALSTHPYGCRVIQR 113
Query: 496 ALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATL 555
LE Q ++ EL H + V+DQ GN+VIQ +E E I++ RG V L
Sbjct: 114 ILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVL 173
Query: 556 STHPYGCRVIQRVLEHCSDEQQGQCIVDEI 585
S H + V+++ + H S ++ ++DE+
Sbjct: 174 SQHKFASNVVEKCVTHASRTERA-VLIDEV 202
>SGD|S000002982 [details] [associations]
symbol:PUF4 "Member of the PUF protein family" species:4932
"Saccharomyces cerevisiae" [GO:0008104 "protein localization"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003729
"mRNA binding" evidence=ISS;IDA] [GO:0001308 "negative regulation
of chromatin silencing involved in replicative cell aging"
evidence=IGI;IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IGI]
[GO:0017148 "negative regulation of translation" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SGD:S000002982 GO:GO:0005737 GO:GO:0008104
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BK006941
GO:GO:0017148 GO:GO:0003729 GO:GO:0006351 EMBL:S58126 GO:GO:0000288
eggNOG:COG5099 GeneTree:ENSGT00390000017241 GO:GO:0001308
OrthoDB:EOG42NN7Z EMBL:S57889 EMBL:Z72536 PIR:S64016
RefSeq:NP_011501.1 PDB:3BWT PDB:3BX2 PDB:3BX3 PDB:4DZS PDBsum:3BWT
PDBsum:3BX2 PDBsum:3BX3 PDBsum:4DZS ProteinModelPortal:P25339
SMR:P25339 DIP:DIP-2638N IntAct:P25339 MINT:MINT-425380
STRING:P25339 PaxDb:P25339 PeptideAtlas:P25339 EnsemblFungi:YGL014W
GeneID:852870 KEGG:sce:YGL014W CYGD:YGL014w HOGENOM:HOG000115799
OMA:FRRQTFH EvolutionaryTrace:P25339 NextBio:972496
Genevestigator:P25339 GermOnline:YGL014W Uniprot:P25339
Length = 888
Score = 415 (151.1 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 99/287 (34%), Positives = 163/287 (56%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
++K +EE SS L G I DQHG RF+Q++L+ ++ ++F+E
Sbjct: 544 AEKQRKIEE--SSRFADAVLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETK 601
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
+ +LMTD FGNY+IQK E + +QR L + + +SL +G R +QK +E I+
Sbjct: 602 DYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKISSPHFVEISLNPHGTRALQKLIECIK 661
Query: 502 LHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPY 560
+++Q+V++ L + ++ +D NGNHVIQKC++ + E +FI A ++TH +
Sbjct: 662 TDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRH 721
Query: 561 GCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVL--ERGKS-YERT-Q 616
GC V+QR L+H + EQ + D++L L D +GNYV Q+++ E K+ Y+ T +
Sbjct: 722 GCCVLQRCLDHGTTEQCDN-LCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHK 780
Query: 617 ILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEE 663
I+ L + +++S HK+ SNV+EK L+ +E +L EIL E
Sbjct: 781 IVHLLKPRAIELSIHKFGSNVIEKILKTAIVSEPMIL--EILNNGGE 825
Score = 213 (80.0 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 70/251 (27%), Positives = 126/251 (50%)
Query: 388 LEELKSSNAQKFELSDIAG-RIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL-PHAS 445
LEE+ + Q+ L+ I+ VE S++ HG+R +Q+ +E +E+ + + L P+
Sbjct: 621 LEEVTTE--QRIVLTKISSPHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTV 678
Query: 446 KLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQK 505
+L D+ GN+VIQK + P+ + + + + + ++ +GC V+Q+ L+ Q
Sbjct: 679 QLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRHGCCVLQRCLDHGTTEQC 738
Query: 506 SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEF-----IISAFRGQVATLSTHPY 560
L +L V + D GN+V+Q I AEK ++ I+ + + LS H +
Sbjct: 739 DNLCDKLLALVDKLTLDPFGNYVVQYIIT-KEAEKNKYDYTHKIVHLLKPRAIELSIHKF 797
Query: 561 GCRVIQRVLEHCSDEQQGQCIVDEIL----ESAF-ALAQDQYGNYVTQHVLERGKSYERT 615
G VI+++L+ + ++ EIL E+ +L D YGNYV Q L+ S+++
Sbjct: 798 GSNVIEKILKTAIVSEP---MILEILNNGGETGIQSLLNDSYGNYVLQTALDI--SHKQN 852
Query: 616 QILSKLAGKIV 626
L K +IV
Sbjct: 853 DYLYKRLSEIV 863
Score = 40 (19.1 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 20/100 (20%), Positives = 36/100 (36%)
Query: 103 MQQYPSAXXXXXXXXXXXXXXXXSLGMNNAHNAGTYMPSGNPFYPSFQPSGAGVYPSQYN 162
MQ + A S+ +N ++ +++P N S + S + S+ +
Sbjct: 231 MQNFSKAKKPSVGANNTAKTRTQSISFDNTPSSTSFIPPTNSV--SEKLSDFKIETSKED 288
Query: 163 VGGYALNSALFPP--FVAGYPSQGPVPMPFDATSGSSFNI 200
+ + P + A YP GP+ P G NI
Sbjct: 289 LINKTAPAKKESPTTYGAAYPYGGPLLQPNPIMPGHPHNI 328
Score = 38 (18.4 bits), Expect = 2.0e-35, Sum P(2) = 2.0e-35
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 19 PCVMDPQDIALISNNGPAAVSFSSSPCPDGTETSRNPR 56
P P +A + N +V+FS G T+ N +
Sbjct: 370 PLTQSPIHLAPVLNPSSNSVAFSDMKNDGGKPTTDNDK 407
>POMBASE|SPAC4G8.03c [details] [associations]
symbol:SPAC4G8.03c "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO;IDA]
[GO:0005794 "Golgi apparatus" evidence=IDA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC4G8.03c GO:GO:0005794 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 PIR:T38847 RefSeq:NP_593062.1
ProteinModelPortal:Q09829 EnsemblFungi:SPAC4G8.03c.1 GeneID:2543684
KEGG:spo:SPAC4G8.03c OrthoDB:EOG4QJVZ9 NextBio:20804690
Uniprot:Q09829
Length = 780
Score = 375 (137.1 bits), Expect = 1.4e-31, P = 1.4e-31
Identities = 81/268 (30%), Positives = 145/268 (54%)
Query: 392 KSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDV 451
KS + Q L G + DQ+G R++Q+ L+ F E+ +LM D
Sbjct: 451 KSQDNQIPHLVGFLGHLSTICKDQYGCRYLQKLLDENPKVNASLFFPEIRQSVVQLMIDP 510
Query: 452 FGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE 511
FGNY+ QK F + S +Q+ + + ++ + +YG R +Q ++ + +++ L+L+
Sbjct: 511 FGNYMCQKLFVYASREQKLSMLNGIGEGIVDICSNLYGTRSMQNIIDKLTSNEQISLLLK 570
Query: 512 LDGHVMRCVR-DQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLE 570
+ + + D NG HV+QKCI P EK+E + + + TL+T+ +GC ++QR L+
Sbjct: 571 IIIPSLTTLACDNNGTHVLQKCIAKFPPEKLEPLFLSMEENLITLATNRHGCCILQRCLD 630
Query: 571 HCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQ 630
+ + Q + +V+ I++S L Q+ YGNY+ QHVLE +I+ K G I ++S
Sbjct: 631 RTNGDIQER-LVNSIIKSCLLLVQNAYGNYLVQHVLELNIQPYTERIIEKFFGNICKLSL 689
Query: 631 HKYASNVVEKCLEYGDTAERELLIEEIL 658
K++SN +E+C+ + RE +++E L
Sbjct: 690 QKFSSNAIEQCIRTASPSTREQMLQEFL 717
Score = 197 (74.4 bits), Expect = 5.6e-12, P = 5.6e-12
Identities = 58/252 (23%), Positives = 119/252 (47%)
Query: 393 SSNAQKFE-LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVF-KEVLPHASKLMTD 450
+S QK L+ I IV+ + +G+R +Q ++ ++ E++S+ K ++P + L D
Sbjct: 523 ASREQKLSMLNGIGEGIVDICSNLYGTRSMQNIIDKLTSNEQISLLLKIIIPSLTTLACD 582
Query: 451 VFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVL 510
G +V+QK P++ + L + ++ L+ +GC ++Q+ L+ + +LV
Sbjct: 583 NNGTHVLQKCIAKFPPEKLEPLFLSMEENLITLATNRHGCCILQRCLDRTNGDIQERLVN 642
Query: 511 ELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLE 570
+ + V++ GN+++Q +E E II F G + LS + I++ +
Sbjct: 643 SIIKSCLLLVQNAYGNYLVQHVLELNIQPYTERIIEKFFGNICKLSLQKFSSNAIEQCIR 702
Query: 571 HCSDEQQGQCIVDEILE--SAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQM 628
S + Q ++ E L + L D Y NYV Q L ++ IL ++ I ++
Sbjct: 703 TASPSTREQ-MLQEFLSFPNIEQLLDDCYANYVMQRFLNVADESQKFLILRSISHVIPKI 761
Query: 629 SQHKYASNVVEK 640
++ +++ K
Sbjct: 762 QNTRHGRHILAK 773
Score = 168 (64.2 bits), Expect = 7.9e-09, P = 7.9e-09
Identities = 50/273 (18%), Positives = 126/273 (46%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKL 447
L+E NA F +I +V+ +D G+ Q+ + S E+K+S+ + +
Sbjct: 484 LDENPKVNASLF-FPEIRQSVVQLMIDPFGNYMCQKLFVYASREQKLSMLNGIGEGIVDI 542
Query: 448 MTDVFGNYVIQKFFEHGSPDQRKELAEKLV-GQVLPLSLQMYGCRVIQKALEVIELHQKS 506
++++G +Q + + +++ L K++ + L+ G V+QK + +
Sbjct: 543 CSNLYGTRSMQNIIDKLTSNEQISLLLKIIIPSLTTLACDNNGTHVLQKCIAKFPPEKLE 602
Query: 507 QLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
L L ++ +++ +++G ++Q+C++ + E ++++ L + YG ++Q
Sbjct: 603 PLFLSMEENLITLATNRHGCCILQRCLDRTNGDIQERLVNSIIKSCLLLVQNAYGNYLVQ 662
Query: 567 RVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAG--K 624
VLE + + + I+++ + L+ ++ + + + R Q+L +
Sbjct: 663 HVLE-LNIQPYTERIIEKFFGNICKLSLQKFSSNAIEQCIRTASPSTREQMLQEFLSFPN 721
Query: 625 IVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 657
I Q+ YA+ V+++ L D +++ L++ I
Sbjct: 722 IEQLLDDCYANYVMQRFLNVADESQKFLILRSI 754
Score = 130 (50.8 bits), Expect = 0.00010, P = 0.00010
Identities = 58/277 (20%), Positives = 117/277 (42%)
Query: 385 HSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHA 444
+SF +SN K LS A E S D S ++ K + S + ++ L H
Sbjct: 412 NSFFGSHSTSNYSKVPLS--AKLTGEKSDDL--SNLLKNKGKKKSQDNQIPHLVGFLGHL 467
Query: 445 SKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQ-VLPLSLQMYGCRVIQKALEVIELH 503
S + D +G +QK + +P L + Q V+ L + +G + QK
Sbjct: 468 STICKDQYGCRYLQKLLDE-NPKVNASLFFPEIRQSVVQLMIDPFGNYMCQKLFVYASRE 526
Query: 504 QKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPA-EKIEFIISAFRGQVATLSTHPYGC 562
QK ++ + ++ + G +Q I+ + + E+I ++ + TL+ G
Sbjct: 527 QKLSMLNGIGEGIVDICSNLYGTRSMQNIIDKLTSNEQISLLLKIIIPSLTTLACDNNGT 586
Query: 563 RVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLA 622
V+Q+ + E+ + + E+ LA +++G + Q L+R + ++++ +
Sbjct: 587 HVLQKCIAKFPPEKLEPLFLS-MEENLITLATNRHGCCILQRCLDRTNGDIQERLVNSII 645
Query: 623 GKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILG 659
+ + Q+ Y + +V+ LE E +IE+ G
Sbjct: 646 KSCLLLVQNAYGNYLVQHVLELNIQPYTERIIEKFFG 682
>TAIR|locus:2138258 [details] [associations]
symbol:PUM11 "pumilio 11" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005737
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AL161513 eggNOG:COG5099 EMBL:AL161813 HOGENOM:HOG000124802
IPI:IPI00541594 PIR:A85089 RefSeq:NP_192624.2 UniGene:At.54217
ProteinModelPortal:Q9LDW3 SMR:Q9LDW3 EnsemblPlants:AT4G08840.1
GeneID:826455 KEGG:ath:AT4G08840 TAIR:At4g08840 InParanoid:Q9LDW3
OMA:MSISDER PhylomeDB:Q9LDW3 Genevestigator:Q9LDW3 Uniprot:Q9LDW3
Length = 556
Score = 366 (133.9 bits), Expect = 3.0e-31, P = 3.0e-31
Identities = 90/288 (31%), Positives = 155/288 (53%)
Query: 375 GQRTFEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV 434
G R + S K + K + + D G + + DQ G R +Q+ ++ + + +
Sbjct: 216 GSRELDGSAK---CMKNKEDSLDLASMVDSYGSVYLMAKDQLGCRLLQKFVDEGNFVDVM 272
Query: 435 SVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLV---GQVLPLSLQMYGCR 491
+FKEV+ + +L TD FGNY+IQK E + +QR ++ +L G ++ +S+ YG R
Sbjct: 273 IIFKEVINNVIELGTDPFGNYLIQKLIEVCNEEQRTQILIRLTSKPGLLVKISINNYGTR 332
Query: 492 VIQKALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRG 550
V+QK +E + ++ LV L + R+ NGNHVI C++ +FI+ A
Sbjct: 333 VVQKLIETVTTKEQISLVKSALVPGFLSLFRELNGNHVILNCLKFFSPNDNKFILEAATK 392
Query: 551 QVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGK 610
++T +GC V+QR + + EQ + +VDEI ++ LAQD +GNY+ Q+++E K
Sbjct: 393 FCIEIATTRHGCCVLQRCVSYSVGEQHEK-LVDEISRNSLLLAQDPFGNYLVQYIIE--K 449
Query: 611 SYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEIL 658
+L +L G V+++ K+ S+VVEKCL Y + R ++ E++
Sbjct: 450 KVGGVNVLFELRGNYVKLATQKFGSHVVEKCLRYYPES-RSQIVNELV 496
Score = 234 (87.4 bits), Expect = 2.7e-16, P = 2.7e-16
Identities = 66/247 (26%), Positives = 123/247 (49%)
Query: 401 LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL-PHASKLMTDVFGNYVIQK 459
L+ G +V+ S++ +G+R +Q+ +E + +E++S+ K L P L ++ GN+VI
Sbjct: 314 LTSKPGLLVKISINNYGTRVVQKLIETVTTKEQISLVKSALVPGFLSLFRELNGNHVILN 373
Query: 460 FFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRC 519
+ SP+ K + E + ++ +GC V+Q+ + Q +LV E+ + +
Sbjct: 374 CLKFFSPNDNKFILEAATKFCIEIATTRHGCCVLQRCVSYSVGEQHEKLVDEISRNSLLL 433
Query: 520 VRDQNGNHVIQKCIECVPAEKIEFIISAF--RGQVATLSTHPYGCRVIQRVLEHCSDEQQ 577
+D GN+++Q IE +K+ + F RG L+T +G V+++ L + E +
Sbjct: 434 AQDPFGNYLVQYIIE----KKVGGVNVLFELRGNYVKLATQKFGSHVVEKCLRYYP-ESR 488
Query: 578 GQCIVDEILESA-FA-LAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYAS 635
Q IV+E++ F L QD Y NYV Q L + K + R ++ K+ + + Y
Sbjct: 489 SQ-IVNELVSVLNFGYLLQDPYANYVIQCALSKTKGFVRASLVEKVR-RYENLKMTPYCK 546
Query: 636 NVVEKCL 642
+ K L
Sbjct: 547 RIFSKNL 553
>WB|WBGene00004239 [details] [associations]
symbol:puf-3 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0051301 "cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0035046 "pronuclear
migration" evidence=IMP] [GO:0009992 "cellular water homeostasis"
evidence=IMP] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0009792 GO:GO:0035046
GO:GO:0006915 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000910 GO:GO:0003730 GO:GO:0009992 EMBL:AL021488
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
HSSP:Q14671 RefSeq:NP_502606.1 ProteinModelPortal:Q9U2G4 SMR:Q9U2G4
IntAct:Q9U2G4 MINT:MINT-251162 STRING:Q9U2G4 PaxDb:Q9U2G4
EnsemblMetazoa:Y45F10A.2.1 EnsemblMetazoa:Y45F10A.2.2 GeneID:178320
KEGG:cel:CELE_Y45F10A.2 UCSC:Y45F10A.2.1 CTD:178320
WormBase:Y45F10A.2 InParanoid:Q9U2G4 OMA:HNEPANA NextBio:900640
Uniprot:Q9U2G4
Length = 502
Score = 341 (125.1 bits), Expect = 1.1e-28, P = 1.1e-28
Identities = 91/268 (33%), Positives = 144/268 (53%)
Query: 401 LSDIAGR--IVEFSVDQHGSRFIQQKLEHCSAEEKVSV----FKEVLPHAS---KLMTDV 451
L D+ +VEF+ D++G RF+Q EH E V F++++ + L +++
Sbjct: 137 LQDVLANDALVEFATDKNGCRFLQ---EHYPTENDNDVHQKLFRKLVEDRAIFLSLCSNM 193
Query: 452 FGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE 511
FGN+ +Q+ E + ++++ L E L + L L CRVIQ A++ +++H ++L LE
Sbjct: 194 FGNFFVQRVLECSNTEEQEILTEHLATDLYNLCLDKSACRVIQLAIQKLDVHLATRLSLE 253
Query: 512 L-DGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQ--VATLSTHPYGCRVIQRV 568
L D H++R DQNGNHVIQK ++ +P F++ F + + YGCRVIQ
Sbjct: 254 LRDTHLVRLSIDQNGNHVIQKIVKTLPVSSWTFLVDFFADDDNLIHVCQDKYGCRVIQST 313
Query: 569 LEHCSDEQQGQCIVDEI--LESAFA--------LAQDQYGNYVTQHVLERGKSYE--RTQ 616
+E S +Q QC + L S A LA +++ NYV QHV++ G + R
Sbjct: 314 VETLSTDQYAQCYQHRVILLRSLMAGVTRNCTQLASNEFANYVVQHVIKCGDALAVYRDI 373
Query: 617 ILSK-LAGKIVQMSQHKYASNVVEKCLE 643
I+ + L ++ MSQ KYAS+VVE E
Sbjct: 374 IIEQCLLQNLLSMSQEKYASHVVEVAFE 401
>UNIPROTKB|Q9U2G4 [details] [associations]
symbol:puf-3 "Protein PUF-3" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0009792 GO:GO:0035046
GO:GO:0006915 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000910 GO:GO:0003730 GO:GO:0009992 EMBL:AL021488
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
HSSP:Q14671 RefSeq:NP_502606.1 ProteinModelPortal:Q9U2G4 SMR:Q9U2G4
IntAct:Q9U2G4 MINT:MINT-251162 STRING:Q9U2G4 PaxDb:Q9U2G4
EnsemblMetazoa:Y45F10A.2.1 EnsemblMetazoa:Y45F10A.2.2 GeneID:178320
KEGG:cel:CELE_Y45F10A.2 UCSC:Y45F10A.2.1 CTD:178320
WormBase:Y45F10A.2 InParanoid:Q9U2G4 OMA:HNEPANA NextBio:900640
Uniprot:Q9U2G4
Length = 502
Score = 341 (125.1 bits), Expect = 1.1e-28, P = 1.1e-28
Identities = 91/268 (33%), Positives = 144/268 (53%)
Query: 401 LSDIAGR--IVEFSVDQHGSRFIQQKLEHCSAEEKVSV----FKEVLPHAS---KLMTDV 451
L D+ +VEF+ D++G RF+Q EH E V F++++ + L +++
Sbjct: 137 LQDVLANDALVEFATDKNGCRFLQ---EHYPTENDNDVHQKLFRKLVEDRAIFLSLCSNM 193
Query: 452 FGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE 511
FGN+ +Q+ E + ++++ L E L + L L CRVIQ A++ +++H ++L LE
Sbjct: 194 FGNFFVQRVLECSNTEEQEILTEHLATDLYNLCLDKSACRVIQLAIQKLDVHLATRLSLE 253
Query: 512 L-DGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQ--VATLSTHPYGCRVIQRV 568
L D H++R DQNGNHVIQK ++ +P F++ F + + YGCRVIQ
Sbjct: 254 LRDTHLVRLSIDQNGNHVIQKIVKTLPVSSWTFLVDFFADDDNLIHVCQDKYGCRVIQST 313
Query: 569 LEHCSDEQQGQCIVDEI--LESAFA--------LAQDQYGNYVTQHVLERGKSYE--RTQ 616
+E S +Q QC + L S A LA +++ NYV QHV++ G + R
Sbjct: 314 VETLSTDQYAQCYQHRVILLRSLMAGVTRNCTQLASNEFANYVVQHVIKCGDALAVYRDI 373
Query: 617 ILSK-LAGKIVQMSQHKYASNVVEKCLE 643
I+ + L ++ MSQ KYAS+VVE E
Sbjct: 374 IIEQCLLQNLLSMSQEKYASHVVEVAFE 401
>TAIR|locus:2011349 [details] [associations]
symbol:PUM9 "pumilio 9" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AC021198 eggNOG:COG5099 HOGENOM:HOG000124802 EMBL:DQ446324
IPI:IPI00533721 PIR:D86479 RefSeq:NP_174811.1 UniGene:At.51961
ProteinModelPortal:Q1PFN9 SMR:Q1PFN9 PRIDE:Q1PFN9
EnsemblPlants:AT1G35730.1 GeneID:840477 KEGG:ath:AT1G35730
TAIR:At1g35730 InParanoid:Q1PFN9 OMA:CAEIAIH PhylomeDB:Q1PFN9
ProtClustDB:CLSN2681930 Genevestigator:Q1PFN9 Uniprot:Q1PFN9
Length = 564
Score = 344 (126.2 bits), Expect = 1.3e-28, P = 1.3e-28
Identities = 84/268 (31%), Positives = 147/268 (54%)
Query: 394 SNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFG 453
SN + +I G + + DQ G R +Q+ +E + E + ++ H +L D FG
Sbjct: 240 SNNDLVSMVEIYGSVNLMAKDQIGCRVLQKLVEEGTFHEAKVILLAIIDHVVELSMDPFG 299
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVG---QVLPLSLQMYGCRVIQKALEVIELHQKSQLVL 510
NY++QK F+ +QR + L +++ + L YG RV+QK +E ++ Q+ LV
Sbjct: 300 NYIVQKLFDVSDEEQRTLIVSVLTSNPRELIRICLNTYGTRVVQKMIETVKTKQQIALVK 359
Query: 511 E-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVL 569
L + V+D NGNHVIQ C++ + EF++ A A ++ H +GC V+Q +
Sbjct: 360 SGLKPGFLALVKDLNGNHVIQSCLQTLGPNDNEFVLEAATKYCAEIAIHRHGCCVLQCCI 419
Query: 570 EHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMS 629
+ S Q + +V EI ++ L+QD +GNYV Q+++++ S ++L + +++
Sbjct: 420 SN-SVGLQRERLVAEISRNSLHLSQDPFGNYVVQYLIDQQVS--AVKLLVQFRMHYAELA 476
Query: 630 QHKYASNVVEKCL-EYGDT-AE--RELL 653
K++S+V+EKCL +Y ++ AE RELL
Sbjct: 477 TQKFSSHVIEKCLRKYPESRAEIVRELL 504
Score = 195 (73.7 bits), Expect = 5.4e-12, P = 5.4e-12
Identities = 49/198 (24%), Positives = 93/198 (46%)
Query: 465 SPDQRKELAE--KLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRD 522
SP +L ++ G V ++ GCRV+QK +E H+ ++L + HV+ D
Sbjct: 237 SPKSNNDLVSMVEIYGSVNLMAKDQIGCRVLQKLVEEGTFHEAKVILLAIIDHVVELSMD 296
Query: 523 QNGNHVIQKCIECVPAEKIEFIISAFRG---QVATLSTHPYGCRVIQRVLEHCSDEQQGQ 579
GN+++QK + E+ I+S ++ + + YG RV+Q+++E +QQ
Sbjct: 297 PFGNYIVQKLFDVSDEEQRTLIVSVLTSNPRELIRICLNTYGTRVVQKMIETVKTKQQIA 356
Query: 580 CIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVE 639
+ + AL +D GN+V Q L+ + +L +++ H++ V++
Sbjct: 357 LVKSGLKPGFLALVKDLNGNHVIQSCLQTLGPNDNEFVLEAATKYCAEIAIHRHGCCVLQ 416
Query: 640 KCLEYGDTAERELLIEEI 657
C+ +RE L+ EI
Sbjct: 417 CCISNSVGLQRERLVAEI 434
Score = 195 (73.7 bits), Expect = 5.4e-12, P = 5.4e-12
Identities = 54/237 (22%), Positives = 114/237 (48%)
Query: 408 IVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL-PHASKLMTDVFGNYVIQKFFEHGSP 466
++ ++ +G+R +Q+ +E ++++++ K L P L+ D+ GN+VIQ + P
Sbjct: 329 LIRICLNTYGTRVVQKMIETVKTKQQIALVKSGLKPGFLALVKDLNGNHVIQSCLQTLGP 388
Query: 467 DQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGN 526
+ + + E +++ +GC V+Q + Q+ +LV E+ + + +D GN
Sbjct: 389 NDNEFVLEAATKYCAEIAIHRHGCCVLQCCISNSVGLQRERLVAEISRNSLHLSQDPFGN 448
Query: 527 HVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEIL 586
+V+Q I+ ++ ++ FR A L+T + VI++ L E + + + + +
Sbjct: 449 YVVQYLID-QQVSAVKLLVQ-FRMHYAELATQKFSSHVIEKCLRKYP-ESRAEIVRELLC 505
Query: 587 ESAFA-LAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCL 642
F L QD Y NYV Q L K R ++++K+ + ++ Y + K +
Sbjct: 506 VPNFEYLLQDPYANYVIQTALSVTKGPVRAKLVAKVY-RYGKLHSSPYCKKIFSKTI 561
>SGD|S000003146 [details] [associations]
symbol:MPT5 "mRNA-binding protein of the PUF family"
species:4932 "Saccharomyces cerevisiae" [GO:0030674 "protein
binding, bridging" evidence=IPI] [GO:0045947 "negative regulation
of translational initiation" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SGD:S000003146 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BK006941 GO:GO:0045947
GO:GO:0003729 eggNOG:COG5099 GeneTree:ENSGT00390000017241
EMBL:X83690 EMBL:Z72700 EMBL:D25541 EMBL:D26184 PIR:S64195
RefSeq:NP_011337.1 ProteinModelPortal:P39016 SMR:P39016
DIP:DIP-2271N IntAct:P39016 MINT:MINT-2779525 STRING:P39016
PaxDb:P39016 PRIDE:P39016 EnsemblFungi:YGL178W GeneID:852697
KEGG:sce:YGL178W CYGD:YGL178w HOGENOM:HOG000113640 OMA:ISINQYG
OrthoDB:EOG42NN7Z NextBio:972038 Genevestigator:P39016
GermOnline:YGL178W GO:GO:1900153 Uniprot:P39016
Length = 859
Score = 346 (126.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 84/267 (31%), Positives = 152/267 (56%)
Query: 393 SSNAQKFELSDIAGRIVEF---SVDQHGSRFIQQKLEHCSAEEKVS--VFKEVLPHASKL 447
S+++ E+S + R +++ + DQ G RF+Q+KLE S V +++++ P L
Sbjct: 197 STSSSMVEISALPLRDLDYIKLATDQFGCRFLQKKLETPSESNMVRDLMYEQIKPFFLDL 256
Query: 448 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQ 507
+ D FGNY++QK ++ + +Q+ L + + V +S+ YG R +QK ++ ++ +
Sbjct: 257 ILDPFGNYLVQKLCDYLTAEQKTLLIQTIYPNVFQISINQYGTRSLQKIIDTVDNEVQID 316
Query: 508 LVL-----ELDG--HVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAF--RGQVATLSTH 558
L++ E V+ + D NGNHVIQKCI K FII A + + T+STH
Sbjct: 317 LIIKGFSQEFTSIEQVVTLINDLNGNHVIQKCIFKFSPSKFGFIIDAIVEQNNIITISTH 376
Query: 559 PYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKS--YERTQ 616
+GC V+Q++L C+ +Q + V +I++ L DQ+GNY+ Q +L+ + Y +
Sbjct: 377 KHGCCVLQKLLSVCTLQQIFKISV-KIVQFLPGLINDQFGNYIIQFLLDIKELDFYLLAE 435
Query: 617 ILSKLAGKIVQMSQHKYASNVVEKCLE 643
+ ++L+ ++ Q+S K++SNVVEK ++
Sbjct: 436 LFNRLSNELCQLSCLKFSSNVVEKFIK 462
>POMBASE|SPCC1682.08c [details] [associations]
symbol:SPCC1682.08c "RNA-binding protein Mcp2"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007126
"meiosis" evidence=IEP] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
PomBase:SPCC1682.08c GO:GO:0007126 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003723 eggNOG:COG5099
EMBL:AB189990 PIR:T41065 RefSeq:NP_587801.1
ProteinModelPortal:O74438 EnsemblFungi:SPCC1682.08c.1
GeneID:2539137 KEGG:spo:SPCC1682.08c OMA:FNDSANG OrthoDB:EOG4QNR4B
NextBio:20800309 Uniprot:O74438
Length = 703
Score = 331 (121.6 bits), Expect = 8.6e-27, Sum P(2) = 8.6e-27
Identities = 85/314 (27%), Positives = 161/314 (51%)
Query: 355 QGLNRNTGIYSGWQGQRTFEGQRTFEDSKKH---SFLEELKSSNAQKFELSDIAGRIVEF 411
+G+N + S W+ E + + ++ NA ++ + I +I+
Sbjct: 312 KGVNSAASLQSIWETMNNSNPSVIPESTSSREPAARYRKISERNAV-YDWNVIIDKII-V 369
Query: 412 SVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKE 471
S DQ S F+QQKL+ S + K ++ ++ LM + FGN+++Q+ FEHG+ Q ++
Sbjct: 370 SNDQQSSIFLQQKLKISSYDMKQNIVDSIISQIHPLMLNRFGNFLVQRCFEHGTAPQIRQ 429
Query: 472 LAEKLVGQVLPLSLQMYGCRVIQKAL----EVIELHQKSQLVLELDGHVMRCVRDQNGNH 527
+ ++G +L L+ +GC V+QKA+ E I+L +L L +D +M H
Sbjct: 430 MGSAMLGNMLKLATDPFGCHVVQKAIDNVTEDIKLAMMDELFLTIDVTIMH----HYACH 485
Query: 528 VIQKCIEC----VPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVD 583
V QK E P + + +A RG+ ++ G V+Q + E+C ++ + +CI +
Sbjct: 486 VWQKLFETQWYEYPVNVMNRVNNALRGKWHEVAVGENGSLVVQNMFENCVEKDKRECI-E 544
Query: 584 EILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLE 643
EI+ +A+ Q+GN+V QH++E G+ + +++ L + V+ S ++AS V+EK ++
Sbjct: 545 EIIFHLDGIARGQWGNWVVQHMVENGQGEDLKRVIDALLNRAVEFSIDQFASKVIEKAIK 604
Query: 644 YGDTAERELLIEEI 657
G L +++I
Sbjct: 605 SGPKNFISLYLKQI 618
Score = 180 (68.4 bits), Expect = 6.0e-10, Sum P(2) = 6.0e-10
Identities = 68/293 (23%), Positives = 138/293 (47%)
Query: 381 DSKKHSFLEE-LK-SSNAQKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVF 437
D + FL++ LK SS K + D I +I +++ G+ +Q+ EH +A + +
Sbjct: 372 DQQSSIFLQQKLKISSYDMKQNIVDSIISQIHPLMLNRFGNFLVQRCFEHGTAPQIRQMG 431
Query: 438 KEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKAL 497
+L + KL TD FG +V+QK ++ + D + + ++L + + Y C V QK
Sbjct: 432 SAMLGNMLKLATDPFGCHVVQKAIDNVTEDIKLAMMDELFLTIDVTIMHHYACHVWQKLF 491
Query: 498 EV----IELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIE-CVPAEKIEFIISAFRGQV 552
E ++ +++ L G +NG+ V+Q E CV +K E I +
Sbjct: 492 ETQWYEYPVNVMNRVNNALRGKWHEVAVGENGSLVVQNMFENCVEKDKRE-CIEEIIFHL 550
Query: 553 ATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGK-- 610
++ +G V+Q ++E+ E + ++D +L A + DQ+ + V + ++ G
Sbjct: 551 DGIARGQWGNWVVQHMVENGQGEDLKR-VIDALLNRAVEFSIDQFASKVIEKAIKSGPKN 609
Query: 611 --SYERTQILSKLAGK----IVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 657
S QI + + ++ ++ +Y + ++++ ++ G AE+ L+I I
Sbjct: 610 FISLYLKQITNARVDRTRQPLIDIASDQYGNYLIQQIIQLGQPAEKNLVITHI 662
Score = 174 (66.3 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 47/189 (24%), Positives = 96/189 (50%)
Query: 404 IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEH 463
+ G+ E +V ++GS +Q E+C ++K +E++ H + +GN+V+Q E+
Sbjct: 510 LRGKWHEVAVGENGSLVVQNMFENCVEKDKRECIEEIIFHLDGIARGQWGNWVVQHMVEN 569
Query: 464 GSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALE-----VIELHQKSQLVLELDGH--- 515
G + K + + L+ + + S+ + +VI+KA++ I L+ K +D
Sbjct: 570 GQGEDLKRVIDALLNRAVEFSIDQFASKVIEKAIKSGPKNFISLYLKQITNARVDRTRQP 629
Query: 516 VMRCVRDQNGNHVIQKCIEC-VPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSD 574
++ DQ GN++IQ+ I+ PAEK +I+ + + +L YG +V V E +
Sbjct: 630 LIDIASDQYGNYLIQQIIQLGQPAEK-NLVITHIKKHMVSLRGSKYGQKVAYLV-EKWNS 687
Query: 575 EQQGQCIVD 583
++Q +++
Sbjct: 688 QKQVSSVIN 696
Score = 170 (64.9 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 55/253 (21%), Positives = 113/253 (44%)
Query: 402 SDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFF 461
S + G +++ + D G +Q+ +++ + + K+++ E+ + + +V QK F
Sbjct: 432 SAMLGNMLKLATDPFGCHVVQKAIDNVTEDIKLAMMDELFLTIDVTIMHHYACHVWQKLF 491
Query: 462 E---HGSP-DQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVM 517
E + P + + L G+ +++ G V+Q E K + + E+ H+
Sbjct: 492 ETQWYEYPVNVMNRVNNALRGKWHEVAVGENGSLVVQNMFENCVEKDKRECIEEIIFHLD 551
Query: 518 RCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSD--- 574
R Q GN V+Q +E E ++ +I A + S + +VI++ ++
Sbjct: 552 GIARGQWGNWVVQHMVENGQGEDLKRVIDALLNRAVEFSIDQFASKVIEKAIKSGPKNFI 611
Query: 575 ----EQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQ 630
+Q VD + +A DQYGNY+ Q +++ G+ E+ +++ + +V +
Sbjct: 612 SLYLKQITNARVDRTRQPLIDIASDQYGNYLIQQIIQLGQPAEKNLVITHIKKHMVSLRG 671
Query: 631 HKYASNV---VEK 640
KY V VEK
Sbjct: 672 SKYGQKVAYLVEK 684
Score = 45 (20.9 bits), Expect = 8.6e-27, Sum P(2) = 8.6e-27
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 276 EPIVAAYMGDQNLQSSLNGGP 296
E I++A ++NL S+ NG P
Sbjct: 182 ENILSASSSEENLNSNRNGDP 202
>WB|WBGene00022257 [details] [associations]
symbol:puf-11 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IMP] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0009792 GO:GO:0006915 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0000003 GO:GO:0003723 EMBL:FO081731
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
RefSeq:NP_741425.1 ProteinModelPortal:Q8IU00 SMR:Q8IU00
IntAct:Q8IU00 STRING:Q8IU00 PaxDb:Q8IU00 EnsemblMetazoa:Y73B6BL.38
GeneID:177406 KEGG:cel:CELE_Y73B6BL.38 UCSC:Y73B6BL.38 CTD:177406
WormBase:Y73B6BL.38 InParanoid:Q8IU00 OMA:HVVKCGG NextBio:896676
Uniprot:Q8IU00
Length = 505
Score = 322 (118.4 bits), Expect = 2.3e-26, P = 2.3e-26
Identities = 81/252 (32%), Positives = 138/252 (54%)
Query: 408 IVEFSVDQHGSRFIQQKLEHCSAEE-KVSVFKEVLPHAS---KLMTDVFGNYVIQKFFEH 463
+VEF+ D++G RF+Q+ S + +F++++ + L ++FGN+ +Q+ E
Sbjct: 149 LVEFATDKNGCRFLQEHYPTESDNDIHQKLFRKLVEDRAIFLSLCCNMFGNFFVQRVLEC 208
Query: 464 GSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL-DGHVMRCVRD 522
+ ++++ L E L + L L CRVIQ A++ +++H ++L LEL D +++R D
Sbjct: 209 SNTEEQEILTEHLASDLYNLCLDKSACRVIQLAIQKLDVHLATRLSLELRDTYLVRLSID 268
Query: 523 QNGNHVIQKCIECVPAEKIEFIISAFRGQ--VATLSTHPYGCRVIQRVLEHCSDEQQGQC 580
QNGNHVIQK ++ +P F++ F + + YGCRVIQ +E S + +C
Sbjct: 269 QNGNHVIQKIVKTLPVSAWSFVVEFFADDDNLIHVCQDKYGCRVIQSTVETLSSDTYAEC 328
Query: 581 IVDEI--LESAFA--------LAQDQYGNYVTQHVLERGKSYE--RTQILSK-LAGKIVQ 627
+ L S + LA +++ NYV QHV++ G + R I+ + L ++
Sbjct: 329 YQQRVVLLRSLMSGVTRNCSQLASNEFANYVVQHVIKCGDAMAVYRDVIIEQCLLQNLLS 388
Query: 628 MSQHKYASNVVE 639
MSQ KYAS+VVE
Sbjct: 389 MSQEKYASHVVE 400
>TAIR|locus:2011360 [details] [associations]
symbol:PUM10 "pumilio 10" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AC021198 eggNOG:COG5099 HSSP:Q14671 IPI:IPI00544215 PIR:F86479
RefSeq:NP_174813.1 UniGene:At.51962 ProteinModelPortal:Q9LP21
SMR:Q9LP21 PRIDE:Q9LP21 EnsemblPlants:AT1G35750.1 GeneID:840480
KEGG:ath:AT1G35750 TAIR:At1g35750 HOGENOM:HOG000124802
InParanoid:Q9LP21 OMA:GFEEMMA PhylomeDB:Q9LP21
Genevestigator:Q9LP21 Uniprot:Q9LP21
Length = 528
Score = 322 (118.4 bits), Expect = 3.1e-26, P = 3.1e-26
Identities = 90/303 (29%), Positives = 155/303 (51%)
Query: 367 WQGQRTFEGQRTFE-----DSKKHSFLEELKSSNAQKFELS---DIAGRIVEFSVDQHGS 418
++G FEG R + + S+ +E K + +L +I G + + DQ G
Sbjct: 169 FKGSLMFEGIRVSQILAAMEGSGASYPDEPKINGGLPLDLVSMVEIYGSVNLMARDQIGC 228
Query: 419 RFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVG 478
R +Q+ +E + + +F E++ H +L D GNY++QK +QR + L
Sbjct: 229 RALQKLVEEGTVLDSKVIFLEIIDHVVELSMDPLGNYIVQKLLVVSDEEQRTMIVSVLTS 288
Query: 479 ---QVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIE 534
+++ + L G RVIQK ++ ++ Q+ LV L+ + V D NG HV+Q C+E
Sbjct: 289 KPRELIKICLNTNGTRVIQKMIKTVKTKQQIALVKSALEPGFLVLVNDSNGYHVLQSCLE 348
Query: 535 CVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQ 594
+ +F++ A A L+TH YGC V+Q L + Q + +V EI + L+Q
Sbjct: 349 FLVPNDNKFVVEAATEYCAQLATHQYGCYVLQCSLINTVGLQHER-LVAEISRDSLRLSQ 407
Query: 595 DQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCL-EYGDT-AE--R 650
D +GNYV Q ++++ S +L ++++ K++S+V+EKCL +Y ++ AE R
Sbjct: 408 DPFGNYVVQCLIDQQVS--SVNLLLPFRTHCIELATQKFSSHVIEKCLRKYPESRAEIVR 465
Query: 651 ELL 653
ELL
Sbjct: 466 ELL 468
Score = 202 (76.2 bits), Expect = 8.1e-13, P = 8.1e-13
Identities = 62/239 (25%), Positives = 114/239 (47%)
Query: 408 IVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL-PHASKLMTDVFGNYVIQKFFEHGSP 466
+++ ++ +G+R IQ+ ++ ++++++ K L P L+ D G +V+Q E P
Sbjct: 293 LIKICLNTNGTRVIQKMIKTVKTKQQIALVKSALEPGFLVLVNDSNGYHVLQSCLEFLVP 352
Query: 467 DQRKELAEKLVGQVLPLSLQMYGCRVIQKAL-EVIELHQKSQLVLELDGHVMRCVRDQNG 525
+ K + E L+ YGC V+Q +L + L Q +LV E+ +R +D G
Sbjct: 353 NDNKFVVEAATEYCAQLATHQYGCYVLQCSLINTVGL-QHERLVAEISRDSLRLSQDPFG 411
Query: 526 NHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEI 585
N+V+Q C+ + ++ FR L+T + VI++ L E + + IV E+
Sbjct: 412 NYVVQ-CLIDQQVSSVNLLLP-FRTHCIELATQKFSSHVIEKCLRKYP-ESRAE-IVREL 467
Query: 586 LESA-FA-LAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCL 642
L F L QD Y NYV Q L K R +++ K+ + ++ + Y + K +
Sbjct: 468 LSYPNFEQLLQDPYANYVIQTALSVTKGAVRARLVEKVK-RFGKLQSNPYCKKIFSKTI 525
Score = 152 (58.6 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 47/187 (25%), Positives = 84/187 (44%)
Query: 475 KLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIE 534
++ G V ++ GCR +QK +E + + LE+ HV+ D GN+++QK +
Sbjct: 213 EIYGSVNLMARDQIGCRALQKLVEEGTVLDSKVIFLEIIDHVVELSMDPLGNYIVQKLLV 272
Query: 535 CVPAEKIEFIISAFRG---QVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAF- 590
E+ I+S ++ + + G RVIQ++++ +QQ +V LE F
Sbjct: 273 VSDEEQRTMIVSVLTSKPRELIKICLNTNGTRVIQKMIKTVKTKQQ-IALVKSALEPGFL 331
Query: 591 ALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAER 650
L D G +V Q LE + ++ Q++ H+Y V++ L +
Sbjct: 332 VLVNDSNGYHVLQSCLEFLVPNDNKFVVEAATEYCAQLATHQYGCYVLQCSLINTVGLQH 391
Query: 651 ELLIEEI 657
E L+ EI
Sbjct: 392 ERLVAEI 398
Score = 129 (50.5 bits), Expect = 7.8e-05, P = 7.7e-05
Identities = 67/273 (24%), Positives = 116/273 (42%)
Query: 403 DIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL---PHAS-KLMTDVFGNYVIQ 458
+I +VE S+D G+ +I QKL S EE+ ++ VL P K+ + G VIQ
Sbjct: 249 EIIDHVVELSMDPLGN-YIVQKLLVVSDEEQRTMIVSVLTSKPRELIKICLNTNGTRVIQ 307
Query: 459 KFFEHGSPDQRKELAEK-LVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVM 517
K + Q+ L + L L L G V+Q LE + + +V +
Sbjct: 308 KMIKTVKTKQQIALVKSALEPGFLVLVNDSNGYHVLQSCLEFLVPNDNKFVVEAATEYCA 367
Query: 518 RCVRDQNGNHVIQ-KCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQ 576
+ Q G +V+Q I V + + R + LS P+G V+Q ++ D+Q
Sbjct: 368 QLATHQYGCYVLQCSLINTVGLQHERLVAEISRDSLR-LSQDPFGNYVVQCLI----DQQ 422
Query: 577 QGQC-IVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAG--KIVQMSQHKY 633
++ LA ++ ++V + L + R +I+ +L Q+ Q Y
Sbjct: 423 VSSVNLLLPFRTHCIELATQKFSSHVIEKCLRKYPE-SRAEIVRELLSYPNFEQLLQDPY 481
Query: 634 ASNVVEKCLEYGDTAERELLIEEI--LGQSEEN 664
A+ V++ L A R L+E++ G+ + N
Sbjct: 482 ANYVIQTALSVTKGAVRARLVEKVKRFGKLQSN 514
>POMBASE|SPAC4G9.05 [details] [associations]
symbol:mpf1 "meiotic PUF family protein 1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0007126
"meiosis" evidence=IEP] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
PomBase:SPAC4G9.05 GO:GO:0007126 GO:GO:0005737 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CU329670_GR GO:GO:0003729 eggNOG:COG5099
OrthoDB:EOG4QNR4B EMBL:AB248102 PIR:T38864 RefSeq:NP_593687.1
ProteinModelPortal:Q10238 EnsemblFungi:SPAC4G9.05.1 GeneID:2543134
KEGG:spo:SPAC4G9.05 NextBio:20804161 Uniprot:Q10238
Length = 581
Score = 317 (116.6 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 83/290 (28%), Positives = 150/290 (51%)
Query: 379 FEDSKKHSFLEELK-SSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVF 437
FE + HS E L+ S+ K++ + +I+ F DQ S +QQ+L++ E+ +++
Sbjct: 233 FEKNSVHSGKETLQYSATISKWKA--MIEQII-FQNDQAASLSLQQQLKNEDIEDNINLI 289
Query: 438 KEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKAL 497
+LP + LM + FGN++IQK FE+ + Q + + L V LS+ +G V+QK+L
Sbjct: 290 NTILPFSVTLMKNKFGNFLIQKCFEYSTEAQLQSFSYFLKKHVKELSIDAFGSHVLQKSL 349
Query: 498 EVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAF----RGQVA 553
E+ + L+ EL + + ++ HV QK E ++ I F +G+
Sbjct: 350 EIYPERFTNNLIEELIECLPATLMQRHSCHVWQKFFETRRKSLVDGIFDHFNKKMQGKWL 409
Query: 554 TLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYE 613
+S G V+Q + E+C ++ + C+ DEI+ + + Q+GN+V QH++E G +
Sbjct: 410 QVSVSEMGSLVVQTIFENCKEKDKRTCL-DEIINNMDQIICGQWGNWVIQHIIEHGSEPD 468
Query: 614 RTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEE 663
+ +IL+ L ++ S ++YAS VVE+ L + ++EI E
Sbjct: 469 KQRILNSLLKEVESYSTNRYASKVVERALRVCHVTFFDRYVKEITTPQNE 518
Score = 170 (64.9 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 64/251 (25%), Positives = 113/251 (45%)
Query: 408 IVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPD 467
+ E S+D GS +Q+ LE ++ +E++ + +V QKFFE
Sbjct: 332 VKELSIDAFGSHVLQKSLEIYPERFTNNLIEELIECLPATLMQRHSCHVWQKFFE----T 387
Query: 468 QRKELAE--------KLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRC 519
+RK L + K+ G+ L +S+ G V+Q E + K + E+ ++ +
Sbjct: 388 RRKSLVDGIFDHFNKKMQGKWLQVSVSEMGSLVVQTIFENCKEKDKRTCLDEIINNMDQI 447
Query: 520 VRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCS----DE 575
+ Q GN VIQ IE + I+++ +V + ST+ Y +V++R L C D
Sbjct: 448 ICGQWGNWVIQHIIEHGSEPDKQRILNSLLKEVESYSTNRYASKVVERALRVCHVTFFDR 507
Query: 576 QQGQCIVDEI-LESAFA--LAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHK 632
+ + L + F +A +QYGNY+ Q++L+ + + L +V + HK
Sbjct: 508 YVKEITTPQNELPTIFLQEIASNQYGNYIVQYLLQVATPSQINLMAEHLKKHMVSLRGHK 567
Query: 633 YASNV---VEK 640
Y + VEK
Sbjct: 568 YGQRIAALVEK 578
>CGD|CAL0000028 [details] [associations]
symbol:MPT5 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0045947 "negative regulation of
translational initiation" evidence=IEA] [GO:1900153 "positive
regulation of nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0030674 "protein binding, bridging"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 CGD:CAL0000028
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AACQ01000010 EMBL:AACQ01000009 eggNOG:COG5099
RefSeq:XP_722196.1 RefSeq:XP_722310.1 ProteinModelPortal:Q5AKY7
GeneID:3636032 GeneID:3636205 KEGG:cal:CaO19.12458
KEGG:cal:CaO19.4991 Uniprot:Q5AKY7
Length = 938
Score = 312 (114.9 bits), Expect = 2.1e-24, P = 2.1e-24
Identities = 80/266 (30%), Positives = 138/266 (51%)
Query: 389 EELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHC---SAEEKVS----VFKEVL 441
E L S N K L+ + I++ + DQ+G RF+Q+K++ + + +++ +F ++
Sbjct: 269 EYLASIN--KLPLTQLKSEILKLAKDQYGCRFLQKKIDESLVPNYQVRLANFEIIFNQIY 326
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
H +L+ D FGNY+IQK + + L E L + +S+ +G R +QK ++ +
Sbjct: 327 SHVYELIVDPFGNYLIQKLIVYCNESNLDLLMEILQYNLFQISINQHGTRALQKIIDSLN 386
Query: 502 -LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPY 560
HQ L+ L +++ ++D NGNHVIQK + +FI + + ++TH +
Sbjct: 387 NSHQLGLLIKGLKPYIIELIKDLNGNHVIQKILNKYEPPDCQFIYDSIIDDLYIVATHKH 446
Query: 561 GCRVIQRVLEHCSDEQQGQCIVDEIL--ESAFALAQDQYGNYVTQHVLERGKSYERTQIL 618
GC V+Q+ L H + +Q G+ IL E+ L DQ+GNYV Q+++ QI
Sbjct: 447 GCCVLQKCLNHVTLQQLGE-FSRAILKFENFKLLINDQFGNYVLQYLISINSLDINFQIF 505
Query: 619 SKLAG-KIVQMSQHKYASNVVEKCLE 643
I + K++SNVVEK L+
Sbjct: 506 QNFVNFGISNLCNLKFSSNVVEKFLK 531
Score = 179 (68.1 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 54/215 (25%), Positives = 109/215 (50%)
Query: 408 IVEFSVDQHGSRFIQQKLEHCSAEEKVSVF-KEVLPHASKLMTDVFGNYVIQKFFEHGSP 466
+ + S++QHG+R +Q+ ++ + ++ + K + P+ +L+ D+ GN+VIQK P
Sbjct: 365 LFQISINQHGTRALQKIIDSLNNSHQLGLLIKGLKPYIIELIKDLNGNHVIQKILNKYEP 424
Query: 467 DQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQK---SQLVLELDGHVMRCVRDQ 523
+ + + ++ + ++ +GC V+QK L + L Q S+ +L+ + + + DQ
Sbjct: 425 PDCQFIYDSIIDDLYIVATHKHGCCVLQKCLNHVTLQQLGEFSRAILKFENFKL-LINDQ 483
Query: 524 NGNHVIQKCIECVPAEKIEF-IISAFRG-QVATLSTHPYGCRVIQRVLEHC-SDEQQGQC 580
GN+V+Q I + + I F I F ++ L + V+++ L++C ++E
Sbjct: 484 FGNYVLQYLIS-INSLDINFQIFQNFVNFGISNLCNLKFSSNVVEKFLKNCYANESVNVS 542
Query: 581 -------IVDEILESAF-ALAQDQYGNYVTQHVLE 607
++ IL S L D YGNYV Q +++
Sbjct: 543 FSNLKFELIYIILVSDLNVLINDPYGNYVIQTMID 577
Score = 163 (62.4 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 38/177 (21%), Positives = 89/177 (50%)
Query: 475 KLVGQVLPLSLQMYGCRVIQKALE--VIELHQ----KSQLVL-ELDGHVMRCVRDQNGNH 527
+L ++L L+ YGCR +QK ++ ++ +Q +++ ++ HV + D GN+
Sbjct: 281 QLKSEILKLAKDQYGCRFLQKKIDESLVPNYQVRLANFEIIFNQIYSHVYELIVDPFGNY 340
Query: 528 VIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILE 587
+IQK I ++ ++ + + +S + +G R +Q++++ ++ Q ++ +
Sbjct: 341 LIQKLIVYCNESNLDLLMEILQYNLFQISINQHGTRALQKIIDSLNNSHQLGLLIKGLKP 400
Query: 588 SAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEY 644
L +D GN+V Q +L + + + I + + ++ HK+ V++KCL +
Sbjct: 401 YIIELIKDLNGNHVIQKILNKYEPPDCQFIYDSIIDDLYIVATHKHGCCVLQKCLNH 457
>WB|WBGene00004243 [details] [associations]
symbol:puf-7 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0035188 "hatching" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IGI]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0035188 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0048477 GO:GO:0003723
GO:GO:0000910 GO:GO:0007281 eggNOG:COG5099
GeneTree:ENSGT00390000017241 EMBL:FO080145 HOGENOM:HOG000113900
PIR:T32538 RefSeq:NP_500820.1 PDB:3V71 PDBsum:3V71
ProteinModelPortal:O44169 SMR:O44169 STRING:O44169
EnsemblMetazoa:B0273.2.1 EnsemblMetazoa:B0273.2.2 GeneID:177332
KEGG:cel:CELE_B0273.2 UCSC:B0273.2.1 CTD:177332 WormBase:B0273.2
InParanoid:O44169 OMA:HAMQRIR NextBio:896304 Uniprot:O44169
Length = 485
Score = 261 (96.9 bits), Expect = 1.8e-19, P = 1.8e-19
Identities = 72/281 (25%), Positives = 144/281 (51%)
Query: 401 LSDIA--GRIVEFSVDQHGSRFIQQKLEHCSAEE-KVSVFKEVLPHASKLMTDVF----G 453
L D+ G++++F++D G +F++ S ++ + +VF E ++ L + G
Sbjct: 84 LEDVLLNGQLIDFAIDPSGVKFLEANYPLDSEDQIRKAVF-EKFTESTTLFVGLCHSRNG 142
Query: 454 NYVIQKFFEHGSPDQRKELAEKLV-GQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL 512
N+++QK E +P +++EL +++ G +L + + CRV+Q AL+ + QL+ EL
Sbjct: 143 NFIVQKLVELATPAEQRELLRQMIDGGLLAMCKDKFACRVVQLALQKFDHSNVFQLIQEL 202
Query: 513 DGHVMRCV-RDQNGNHVIQKCIECVPAEKIEFIISAFRG--QVATLSTHPYGCRVIQRVL 569
+ + DQ HVIQ+ ++ +P + F + + + YGCR++Q+V+
Sbjct: 203 STFDLAAMCTDQISIHVIQRVVKQLPVDMWTFFVHFLSSGDSLMAVCQDKYGCRLVQQVI 262
Query: 570 EHCSDEQQGQC----------IVDEILESAFALAQDQYGNYVTQHVLERGKSYE--RTQI 617
+ ++ + C ++ I+ + + L+ +++ NYV Q+V++ E R I
Sbjct: 263 DRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGIMEMYRDTI 322
Query: 618 LSK-LAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 657
+ K L ++ MSQ KYAS+V+E + A ++EEI
Sbjct: 323 IDKCLLRNLLSMSQDKYASHVIEGAFLFAPPALLHEMMEEI 363
>WB|WBGene00004242 [details] [associations]
symbol:puf-6 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0035188 "hatching" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0008285 "negative regulation of cell
proliferation" evidence=IMP] [GO:0007281 "germ cell development"
evidence=IMP] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0006402 "mRNA catabolic process" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0035188 GO:GO:0005737 GO:GO:0008285 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0017148 GO:GO:0048477
GO:GO:0000910 GO:GO:0003730 GO:GO:0007281 GO:GO:0006402
eggNOG:COG5099 GeneTree:ENSGT00390000017241 EMBL:Z81507 PIR:T21080
RefSeq:NP_496773.1 ProteinModelPortal:O01322 SMR:O01322
STRING:O01322 EnsemblMetazoa:F18A11.1.1 EnsemblMetazoa:F18A11.1.2
GeneID:174947 KEGG:cel:CELE_F18A11.1 UCSC:F18A11.1.1 CTD:174947
WormBase:F18A11.1 HOGENOM:HOG000113900 InParanoid:O01322
OMA:RDIANHI NextBio:886152 Uniprot:O01322
Length = 485
Score = 260 (96.6 bits), Expect = 2.3e-19, P = 2.3e-19
Identities = 71/274 (25%), Positives = 141/274 (51%)
Query: 406 GRIVEFSVDQHGSRFIQQKLEHCSAEE-KVSVFKEVLPHASKLMTDVF----GNYVIQKF 460
G +++F++D G +F++ S ++ + +VF E L ++ L + GN+++QK
Sbjct: 91 GLLIDFAIDPSGVKFLEANYPLDSEDQIRKAVF-EKLTESTTLFVGLCHSRNGNFIVQKL 149
Query: 461 FEHGSPDQRKELAEKLV-GQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRC 519
E +P +++EL +++ G +L + + CRV+Q AL+ + QL+ EL +
Sbjct: 150 VELATPAEQRELLRQMIDGGLLVMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLAA 209
Query: 520 V-RDQNGNHVIQKCIECVPAEKIEFIISAFRG--QVATLSTHPYGCRVIQRVLEHCSDEQ 576
+ DQ HVIQ+ ++ +P + F + + + YGCR++Q+V++ ++
Sbjct: 210 MCTDQISIHVIQRVVKQLPVDMWTFFVHFLSSGDSLMAVCQDKYGCRLVQQVIDRLAENP 269
Query: 577 QGQC----------IVDEILESAFALAQDQYGNYVTQHVLERGKSYE--RTQILSK-LAG 623
+ C ++ I+ + + L+ +++ NYV Q+V++ E R I+ K L
Sbjct: 270 KLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGIMEMYRDTIIDKCLLR 329
Query: 624 KIVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 657
++ MSQ KYAS+V+E + A ++EEI
Sbjct: 330 NLLSMSQDKYASHVIEGAFLFAPPALLHEMMEEI 363
>WB|WBGene00001402 [details] [associations]
symbol:fbf-2 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0051729 "germline cell cycle switching, mitotic to meiotic cell
cycle" evidence=IMP] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0045132 "meiotic chromosome
segregation" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0040027 "negative regulation of vulval
development" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=IGI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IPI] [GO:0043186 "P granule" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0030154 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0017148 GO:GO:0040011 GO:GO:0007283
GO:GO:0051729 GO:GO:0040035 GO:GO:0003730 GO:GO:0045132
GO:GO:0040027 GO:GO:0040022 GO:GO:0043186 eggNOG:COG5099
GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078 EMBL:FO080717
PIR:T16128 RefSeq:NP_495220.1 PDB:3K5Q PDB:3K5Y PDB:3K5Z PDB:3K61
PDB:3K62 PDB:3K64 PDB:3QG9 PDB:3QGB PDB:3QGC PDB:3V6Y PDB:3V74
PDBsum:3K5Q PDBsum:3K5Y PDBsum:3K5Z PDBsum:3K61 PDBsum:3K62
PDBsum:3K64 PDBsum:3QG9 PDBsum:3QGB PDBsum:3QGC PDBsum:3V6Y
PDBsum:3V74 ProteinModelPortal:Q09312 SMR:Q09312 MINT:MINT-3385835
STRING:Q09312 EnsemblMetazoa:F21H12.5 GeneID:174017
KEGG:cel:CELE_F21H12.5 UCSC:F21H12.5 CTD:174017 WormBase:F21H12.5
InParanoid:Q09312 OMA:FALENID EvolutionaryTrace:Q09312
NextBio:882143 Uniprot:Q09312
Length = 632
Score = 239 (89.2 bits), Expect = 1.0e-16, P = 1.0e-16
Identities = 69/263 (26%), Positives = 133/263 (50%)
Query: 398 KFELSDI--AGRIVEFSVDQHGSRFIQQKLE-HCSAEEKVSVFKEVLPHAS---KLMTDV 451
+ LS++ +G +++F+VD+ G +F+++ ++ ++ +K +F++V+ KL T++
Sbjct: 182 RLSLSEVLDSGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNI 241
Query: 452 FGNYVIQKFF-------EHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQ 504
FGNY++Q + G ++++L + Q+ + L + CRVIQ +L+ ++L
Sbjct: 242 FGNYLVQSVIGISLATNDDGYTKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSL 301
Query: 505 KSQLVLEL--DGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIIS--AFRGQVATLSTHPY 560
+LV L D ++ DQN NHVIQK + +P + EFI+ A + + + Y
Sbjct: 302 ACKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICSDKY 361
Query: 561 GCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSK 620
GCRV+Q ++E + + VD + +A L + +T V R + + +
Sbjct: 362 GCRVVQTIIEKLTADSMN---VD-LTSAAQNLRERALQRLMTS-VTNRCQELATNEYANY 416
Query: 621 LAGKIVQMSQHK-YASNVVEKCL 642
+ IV Y ++EKCL
Sbjct: 417 IIQHIVSNDDLAVYRECIIEKCL 439
>WB|WBGene00001401 [details] [associations]
symbol:fbf-1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0051729 "germline cell cycle switching, mitotic to meiotic cell
cycle" evidence=IGI;IMP] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0040027 "negative regulation of vulval
development" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=IGI] [GO:0043073 "germ cell nucleus"
evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0010608 "posttranscriptional regulation of gene expression"
evidence=IGI] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0009792
GO:GO:0006898 GO:GO:0048471 GO:GO:0030154 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0017148 GO:GO:0040011
GO:GO:0007283 GO:GO:0051729 GO:GO:0003730 GO:GO:0007548
GO:GO:0040027 GO:GO:0040022 GO:GO:0043073 EMBL:FO081202
RefSeq:NP_495216.1 ProteinModelPortal:Q9N5M6 SMR:Q9N5M6
IntAct:Q9N5M6 STRING:Q9N5M6 EnsemblMetazoa:H12I13.4 GeneID:174016
KEGG:cel:CELE_H12I13.4 UCSC:H12I13.4 CTD:174016 WormBase:H12I13.4
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
InParanoid:Q9N5M6 OMA:TADSINV NextBio:882139 Uniprot:Q9N5M6
Length = 614
Score = 230 (86.0 bits), Expect = 9.3e-16, P = 9.3e-16
Identities = 68/263 (25%), Positives = 133/263 (50%)
Query: 398 KFELSDI--AGRIVEFSVDQHGSRFIQQKLE-HCSAEEKVSVFKEVLPHAS---KLMTDV 451
+ LS++ +G +++F+VD+ G +F+++ ++ ++ +K +F++V+ KL T++
Sbjct: 180 RLSLSEVLDSGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNI 239
Query: 452 FGNYVIQKF-------FEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQ 504
FGNY +Q+ ++ + ++++L + Q+ + L + CRVIQ +L+ ++L
Sbjct: 240 FGNYFVQEIIGMSLTTYDDDNIKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSL 299
Query: 505 KSQLVLEL--DGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIIS--AFRGQVATLSTHPY 560
+LV L D ++ DQN NHVIQK + +P + EFI+ A + + Y
Sbjct: 300 ACKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICFDKY 359
Query: 561 GCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSK 620
GCRV+Q ++E + + VD + +A L + +T V R + + +
Sbjct: 360 GCRVVQTIIEKLTADSIN---VD-LTSAAQHLRERALQRLMTS-VTNRCQELATNEYANY 414
Query: 621 LAGKIVQMSQHK-YASNVVEKCL 642
+ IV Y ++EKCL
Sbjct: 415 IIQHIVSNDDLAVYRECIIEKCL 437
Score = 127 (49.8 bits), Expect = 0.00016, P = 0.00016
Identities = 71/281 (25%), Positives = 119/281 (42%)
Query: 387 FLEE-LKSS--NAQKFELSD-IAGRIVEF---SVDQHGSRFIQQKLEHCSA---EEKVSV 436
FLE+ +K S + QKF+L + + GR +F S + G+ F+Q+ + ++ +
Sbjct: 204 FLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYFVQEIIGMSLTTYDDDNIKR 263
Query: 437 FKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKA 496
+++ S MTD+ + + + + LA KLV Q LP ++ V Q A
Sbjct: 264 QEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLV-QALPRDARLIAICVDQNA 322
Query: 497 LEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLS 556
VI QK V+ L H+ Q C + ++ II +
Sbjct: 323 NHVI---QKVVAVIPLKNWEFIVDFVATPEHLRQICFDKYGCRVVQTIIEKLTADSINVD 379
Query: 557 THPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGK-SYERT 615
+ +R L+ +C E LA ++Y NY+ QH++ + R
Sbjct: 380 LTSAAQHLRERALQRLMTSVTNRC--QE-------LATNEYANYIIQHIVSNDDLAVYRE 430
Query: 616 QILSK-LAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIE 655
I+ K L ++ +SQ K+AS+VVEK + A ELL E
Sbjct: 431 CIIEKCLMRNLLSLSQEKFASHVVEKAFLH---APMELLAE 468
>UNIPROTKB|Q9N5M6 [details] [associations]
symbol:fbf-1 "Fem-3 mRNA-binding factor 1" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0009792
GO:GO:0006898 GO:GO:0048471 GO:GO:0030154 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0017148 GO:GO:0040011
GO:GO:0007283 GO:GO:0051729 GO:GO:0003730 GO:GO:0007548
GO:GO:0040027 GO:GO:0040022 GO:GO:0043073 EMBL:FO081202
RefSeq:NP_495216.1 ProteinModelPortal:Q9N5M6 SMR:Q9N5M6
IntAct:Q9N5M6 STRING:Q9N5M6 EnsemblMetazoa:H12I13.4 GeneID:174016
KEGG:cel:CELE_H12I13.4 UCSC:H12I13.4 CTD:174016 WormBase:H12I13.4
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
InParanoid:Q9N5M6 OMA:TADSINV NextBio:882139 Uniprot:Q9N5M6
Length = 614
Score = 230 (86.0 bits), Expect = 9.3e-16, P = 9.3e-16
Identities = 68/263 (25%), Positives = 133/263 (50%)
Query: 398 KFELSDI--AGRIVEFSVDQHGSRFIQQKLE-HCSAEEKVSVFKEVLPHAS---KLMTDV 451
+ LS++ +G +++F+VD+ G +F+++ ++ ++ +K +F++V+ KL T++
Sbjct: 180 RLSLSEVLDSGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNI 239
Query: 452 FGNYVIQKF-------FEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQ 504
FGNY +Q+ ++ + ++++L + Q+ + L + CRVIQ +L+ ++L
Sbjct: 240 FGNYFVQEIIGMSLTTYDDDNIKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSL 299
Query: 505 KSQLVLEL--DGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIIS--AFRGQVATLSTHPY 560
+LV L D ++ DQN NHVIQK + +P + EFI+ A + + Y
Sbjct: 300 ACKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICFDKY 359
Query: 561 GCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSK 620
GCRV+Q ++E + + VD + +A L + +T V R + + +
Sbjct: 360 GCRVVQTIIEKLTADSIN---VD-LTSAAQHLRERALQRLMTS-VTNRCQELATNEYANY 414
Query: 621 LAGKIVQMSQHK-YASNVVEKCL 642
+ IV Y ++EKCL
Sbjct: 415 IIQHIVSNDDLAVYRECIIEKCL 437
Score = 127 (49.8 bits), Expect = 0.00016, P = 0.00016
Identities = 71/281 (25%), Positives = 119/281 (42%)
Query: 387 FLEE-LKSS--NAQKFELSD-IAGRIVEF---SVDQHGSRFIQQKLEHCSA---EEKVSV 436
FLE+ +K S + QKF+L + + GR +F S + G+ F+Q+ + ++ +
Sbjct: 204 FLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYFVQEIIGMSLTTYDDDNIKR 263
Query: 437 FKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKA 496
+++ S MTD+ + + + + LA KLV Q LP ++ V Q A
Sbjct: 264 QEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLV-QALPRDARLIAICVDQNA 322
Query: 497 LEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLS 556
VI QK V+ L H+ Q C + ++ II +
Sbjct: 323 NHVI---QKVVAVIPLKNWEFIVDFVATPEHLRQICFDKYGCRVVQTIIEKLTADSINVD 379
Query: 557 THPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGK-SYERT 615
+ +R L+ +C E LA ++Y NY+ QH++ + R
Sbjct: 380 LTSAAQHLRERALQRLMTSVTNRC--QE-------LATNEYANYIIQHIVSNDDLAVYRE 430
Query: 616 QILSK-LAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIE 655
I+ K L ++ +SQ K+AS+VVEK + A ELL E
Sbjct: 431 CIIEKCLMRNLLSLSQEKFASHVVEKAFLH---APMELLAE 468
>WB|WBGene00004241 [details] [associations]
symbol:puf-5 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0035188 "hatching" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P
granule" evidence=IDA] InterPro:IPR001313 InterPro:IPR016024
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0035188
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0048477
GO:GO:0003723 GO:GO:0000910 EMBL:Z49967 GO:GO:0043186
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
PIR:T22634 RefSeq:NP_495814.1 ProteinModelPortal:Q20757 SMR:Q20757
STRING:Q20757 PaxDb:Q20757 EnsemblMetazoa:F54C9.8 GeneID:174373
KEGG:cel:CELE_F54C9.8 UCSC:F54C9.8 CTD:174373 WormBase:F54C9.8
InParanoid:Q20757 OMA:MISICIS NextBio:883756 Uniprot:Q20757
Length = 553
Score = 224 (83.9 bits), Expect = 3.4e-15, P = 3.4e-15
Identities = 58/242 (23%), Positives = 118/242 (48%)
Query: 401 LSDIA--GRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVF----GN 454
L D+ G +++F++D+ G +F+++ E V + L + T + GN
Sbjct: 144 LQDVVSNGSLIDFAMDRTGVKFLERHFPEDHDNEMHFVLFDKLTEQGAVFTSLCRSAAGN 203
Query: 455 YVIQKFFEHGSPDQRKELAEKLVGQ-VLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD 513
++IQKF EH + D+++ L K+ ++ + L + CRV+Q +++ ++ +LV ++
Sbjct: 204 FIIQKFVEHATLDEQERLVRKMCDNGLIEMCLDKFACRVVQMSIQKFDVSIAMKLVEKIS 263
Query: 514 G-HVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAF-RGQ-VATLSTHPYGCRVIQRVLE 570
+ DQ HV+QK ++ +P F + R + T+ YGCR++Q+ ++
Sbjct: 264 SLDFLPLCTDQCAIHVLQKVVKLLPISAWSFFVKFLCRDDNLMTVCQDKYGCRLVQQTID 323
Query: 571 HCSDEQQGQC----------IVDEILESAFALAQDQYGNYVTQHVLERGKSYE--RTQIL 618
SD + C ++ + + F L+ +++ NYV Q+V++ E R I+
Sbjct: 324 KLSDNPKLHCFNTRLQLLHGLMTSVARNCFRLSSNEFANYVVQYVIKSSGVMEMYRDTII 383
Query: 619 SK 620
K
Sbjct: 384 EK 385
Score = 184 (69.8 bits), Expect = 8.3e-11, P = 8.3e-11
Identities = 50/194 (25%), Positives = 95/194 (48%)
Query: 480 VLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDG-HVMRCVRDQNGNHVIQKCIECVPA 538
++ + L + CRV+Q +++ ++ +LV ++ + DQ HV+QK ++ +P
Sbjct: 230 LIEMCLDKFACRVVQMSIQKFDVSIAMKLVEKISSLDFLPLCTDQCAIHVLQKVVKLLPI 289
Query: 539 EKIEFIISAF-RGQ-VATLSTHPYGCRVIQRVLEHCSDEQQGQC----------IVDEIL 586
F + R + T+ YGCR++Q+ ++ SD + C ++ +
Sbjct: 290 SAWSFFVKFLCRDDNLMTVCQDKYGCRLVQQTIDKLSDNPKLHCFNTRLQLLHGLMTSVA 349
Query: 587 ESAFALAQDQYGNYVTQHVLERGKSYE--RTQILSK-LAGKIVQMSQHKYASNVVEKCLE 643
+ F L+ +++ NYV Q+V++ E R I+ K L I+ MSQ KYAS+VVE
Sbjct: 350 RNCFRLSSNEFANYVVQYVIKSSGVMEMYRDTIIEKCLLRNILSMSQDKYASHVVEGAFL 409
Query: 644 YGDTAERELLIEEI 657
+ +++EI
Sbjct: 410 FAPPLLLSEMMDEI 423
>WB|WBGene00004240 [details] [associations]
symbol:puf-4 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 eggNOG:COG5099 GeneTree:ENSGT00390000017241
HOGENOM:HOG000016078 EMBL:FO081656 PIR:T33752 RefSeq:NP_500301.1
UniGene:Cel.28747 ProteinModelPortal:Q8I723 SMR:Q8I723
EnsemblMetazoa:M4.2 GeneID:191754 KEGG:cel:CELE_M4.2 UCSC:M4.2
CTD:191754 WormBase:M4.2 InParanoid:Q8I723 NextBio:950224
Uniprot:Q8I723
Length = 420
Score = 175 (66.7 bits), Expect = 7.3e-15, Sum P(2) = 7.3e-15
Identities = 54/172 (31%), Positives = 88/172 (51%)
Query: 494 QKAL-EVIELHQKSQLVLELDGHVMR--CVRDQNGNHVIQKCIECVPAEKIEFIISAFRG 550
QK + E + + S+L EL G + C+ DQNGNHVIQ+ ++ +P +F++ F
Sbjct: 224 QKIIVEYLAIVLASRLASELRGVDLTHACI-DQNGNHVIQQLLKTLPPSSWQFLVEFFSR 282
Query: 551 QV--ATLSTHPYGCRVIQRVLEHCSDEQQGQCI---VDEILESAFALAQDQYGNYVTQHV 605
+ Y CRVIQ LE S +Q + V I+ + LA +++ NYV +HV
Sbjct: 283 DTNFVEVCEDKYVCRVIQSTLETLSKREQLVALRRLVGVIIRNCGQLASNEFANYVVRHV 342
Query: 606 L---ERGKSYERTQILSK-LAGKIVQMSQHKYASNVVEKCLEYGDTAERELL 653
+ + + R I+ K L ++ MSQ KYAS+++ G + E++ L
Sbjct: 343 IKCDDAEMTIYRDVIIEKCLLQNLLSMSQEKYASHMIHVA---GQSTEQKWL 391
Score = 90 (36.7 bits), Expect = 7.3e-15, Sum P(2) = 7.3e-15
Identities = 37/162 (22%), Positives = 73/162 (45%)
Query: 323 QFPTSPIASPVLPSSPVGSTSQLGLRHEMR-LPQGLN-RNTGIYSGWQGQRTFEGQRTFE 380
Q P +P + + T++ G H +R L G N +++GI++ R+ + T
Sbjct: 77 QRPDTPRYQQRASTPSMTPTARFGY-HGIRPLFNGYNQKHSGIFNS-PANRSIVQKSTLP 134
Query: 381 DSKKHSFLEELKSSNAQKFELSDIA--GRIVEFSVDQHGSRFIQ-QKLEHCSAEEKVSVF 437
+ + + A L D+ ++EF D++G RF+Q Q E C E +F
Sbjct: 135 -----IWASDEHGNVADTVTLDDVIQMDSLMEFMKDKNGCRFLQDQYSEDCHVESHQKIF 189
Query: 438 KEVLPHASKLMTD---VFGNYVIQKFFEHGSPDQRKELAEKL 476
++++ + +FGN+ +Q+ E +++K + E L
Sbjct: 190 EQLVADRVIFLDQCKHMFGNFFVQRVLECSDAEEQKIIVEYL 231
Score = 73 (30.8 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 41/156 (26%), Positives = 73/156 (46%)
Query: 516 VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLST-HPYGCRVIQRVLEHCSD 574
V+ C D +I + + V A ++ S RG T + G VIQ++L+
Sbjct: 215 VLEC-SDAEEQKIIVEYLAIVLASRLA---SELRGVDLTHACIDQNGNHVIQQLLKTLPP 270
Query: 575 EQQGQCIVDEIL-ESAFA-LAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIV----QM 628
Q +V+ ++ F + +D+Y V Q LE E+ L +L G I+ Q+
Sbjct: 271 SSW-QFLVEFFSRDTNFVEVCEDKYVCRVIQSTLETLSKREQLVALRRLVGVIIRNCGQL 329
Query: 629 SQHKYASNVVE---KCLEYGDTAERELLIEEILGQS 661
+ +++A+ VV KC + T R+++IE+ L Q+
Sbjct: 330 ASNEFANYVVRHVIKCDDAEMTIYRDVIIEKCLLQN 365
>CGD|CAL0004399 [details] [associations]
symbol:orf19.5381 species:5476 "Candida albicans" [GO:0003729
"mRNA binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] [GO:0001308 "negative
regulation of chromatin silencing involved in replicative cell
aging" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
CGD:CAL0004399 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AACQ01000050 RefSeq:XP_717758.1
ProteinModelPortal:Q5A835 GeneID:3640530 KEGG:cal:CaO19.5381
Uniprot:Q5A835
Length = 783
Score = 219 (82.2 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 57/210 (27%), Positives = 105/210 (50%)
Query: 400 ELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQK 459
+L D G I+ DQHG RF+Q++L + +F E+ A +LM D FGNY+IQK
Sbjct: 440 KLQDFTGSILTLCKDQHGCRFLQREL--INETNATLIFNEIYFKAVELMIDPFGNYLIQK 497
Query: 460 FFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE-LDGHVMR 518
F + +QR L + ++ ++L +G R +QK ++VIE +++ +++ L +++
Sbjct: 498 LFTMINLEQRLVLINQCSNELFRIALDPHGTRSLQKLIDVIETNEEIEIITRNLYSNIVV 557
Query: 519 CVRDQNGNHVIQKCIECVPAEKIEFIIS-AFRGQVATLSTHPYGCRVIQRVLEHCSDEQQ 577
RD NGNHV+QK + + S + R + + + +IQ L + + +
Sbjct: 558 LSRDLNGNHVVQKILTKFNTISSDSNSSDSNRDGAQHQNQNQFIFDIIQANLLYIACHRH 617
Query: 578 GQCIVDEILESAFALAQDQYGNYVTQHVLE 607
G C++ L+ Q + +H ++
Sbjct: 618 GCCVLQRCLDYGNKQQCQQLSQEIAKHTIK 647
Score = 209 (78.6 bits), Expect = 1.6e-12, Sum P(3) = 1.6e-12
Identities = 69/280 (24%), Positives = 127/280 (45%)
Query: 389 EELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLM 448
E + +NA ++I + VE +D G+ IQ+ + E+++ + + ++
Sbjct: 464 ELINETNATLI-FNEIYFKAVELMIDPFGNYLIQKLFTMINLEQRLVLINQCSNELFRIA 522
Query: 449 TDVFGNYVIQKFFEHGSPDQRKELAEK-LVGQVLPLSLQMYGCRVIQKALEVIELHQKSQ 507
D G +QK + ++ E+ + L ++ LS + G V+QK L
Sbjct: 523 LDPHGTRSLQKLIDVIETNEEIEIITRNLYSNIVVLSRDLNGNHVVQKILTKFN------ 576
Query: 508 LVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQR 567
+ D + RD H Q +FI + + ++ H +GC V+QR
Sbjct: 577 -TISSDSNSSDSNRD-GAQHQNQN----------QFIFDIIQANLLYIACHRHGCCVLQR 624
Query: 568 VLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLER---GKSYERTQ------IL 618
L++ ++QQ Q + EI + L+ D YGNYV Q+VL + G + T I+
Sbjct: 625 CLDY-GNKQQCQQLSQEIAKHTIKLSLDPYGNYVVQYVLNKYSVGGDAQNTDNQVIDIII 683
Query: 619 SKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEIL 658
++ +Q+S HK+ SNV+EKCL+ ++ LI+ ++
Sbjct: 684 QEIKSNFIQLSLHKFGSNVIEKCLKISSISKD--LIDNLI 721
Score = 146 (56.5 bits), Expect = 9.8e-06, Sum P(3) = 9.8e-06
Identities = 39/186 (20%), Positives = 88/186 (47%)
Query: 395 NAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGN 454
N +F I ++ + +HG +Q+ L++ + ++ + +E+ H KL D +GN
Sbjct: 596 NQNQFIFDIIQANLLYIACHRHGCCVLQRCLDYGNKQQCQQLSQEIAKHTIKLSLDPYGN 655
Query: 455 YVIQKF---FEHGSPDQRKE------LAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQK 505
YV+Q + G Q + + +++ + LSL +G VI+K L++ + +
Sbjct: 656 YVVQYVLNKYSVGGDAQNTDNQVIDIIIQEIKSNFIQLSLHKFGSNVIEKCLKISSISKD 715
Query: 506 ---SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGC 562
+ +VL+ + + D GN+V+Q ++ E+ E + + + + P+G
Sbjct: 716 LIDNLIVLDHGQAFNQLLNDPFGNYVLQTSLDVANLEQFEQLSKILLPLLPNIKSTPHGR 775
Query: 563 RVIQRV 568
R++ ++
Sbjct: 776 RILNKI 781
Score = 130 (50.8 bits), Expect = 0.00046, Sum P(3) = 0.00046
Identities = 30/135 (22%), Positives = 67/135 (49%)
Query: 474 EKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCI 533
+ G +L L +GCR +Q+ E+I + + E+ + + D GN++IQK
Sbjct: 442 QDFTGSILTLCKDQHGCRFLQR--ELINETNATLIFNEIYFKAVELMIDPFGNYLIQKLF 499
Query: 534 ECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALA 593
+ E+ +I+ ++ ++ P+G R +Q++++ ++ + I + + L+
Sbjct: 500 TMINLEQRLVLINQCSNELFRIALDPHGTRSLQKLIDVIETNEEIEIITRNLYSNIVVLS 559
Query: 594 QDQYGNYVTQHVLER 608
+D GN+V Q +L +
Sbjct: 560 RDLNGNHVVQKILTK 574
Score = 42 (19.8 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 130 NNAHNAGTYMPSGNPFYPSF 149
NN H AG+ S N PSF
Sbjct: 44 NNTHGAGSNSSSSND--PSF 61
Score = 41 (19.5 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 8/16 (50%), Positives = 8/16 (50%)
Query: 174 PPFVAGYPSQGPVPMP 189
PP G PS P P P
Sbjct: 270 PPHSMGLPSFSPFPHP 285
Score = 39 (18.8 bits), Expect = 2.5e-13, Sum P(3) = 2.5e-13
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 31 SNNGPAAVSF--SSSPCPDGTETSRNPRIDDT 60
S+N P+ ++ +S+ C + TE+ N I+ T
Sbjct: 55 SSNDPSFLNGENTSANCTNSTESDDNELIEPT 86
>POMBASE|SPBP35G2.14 [details] [associations]
symbol:SPBP35G2.14 "RNA-binding protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR001313 InterPro:IPR012677
InterPro:IPR016024 Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SMART:SM00360
PomBase:SPBP35G2.14 GO:GO:0005829 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG5099 OrthoDB:EOG4MWCFG RefSeq:NP_595389.2
EnsemblFungi:SPBP35G2.14.1 GeneID:2541323 NextBio:20802433
Uniprot:Q9P789
Length = 1065
Score = 211 (79.3 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 71/285 (24%), Positives = 135/285 (47%)
Query: 400 ELSDIAGRIVEFS-------VDQHGSRFIQQKLEH--CSAEEKVSVFKEVLPHASKLMTD 450
EL+D A +I S ++ R +++++++ C+ EE + L S L +D
Sbjct: 725 ELTDFAAQIPSISKAFSSRRLNAPKLRQVRKRIDNGLCTQEEVEDIAINWLDEVSDLSSD 784
Query: 451 VFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVL 510
GN V+QK F++ S ++ + E++ + + + G QK ++V + +L+
Sbjct: 785 HLGNTVVQKLFDYCSDPVKEMMLERIAPHLAQIGIHKNGTWAAQKIVDVASTEAQMRLIA 844
Query: 511 E-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVL 569
+ L ++ DQ GN+V+Q C++ A +F+ A Q ++ YG R ++ L
Sbjct: 845 KHLQPYIPLLFADQFGNYVVQTCLK-FGAPMNDFVFEAILNQFWVIAQSRYGSRAVRACL 903
Query: 570 EHCS-DEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQIL--SKLAGKIV 626
E E+Q + I + LA + G + +++E +Y IL + IV
Sbjct: 904 ESPDVTEEQRVLVAAAITVYSVHLAMNGNGTLLLTYLVEN-MNYPHIPILLTRRFVQDIV 962
Query: 627 QMSQHKYASNVVEKCLEY--GDTAERELLIEEILG-QSEENDNLL 668
++ H+ A N + K + GDTA +L+++ IL Q++ N N L
Sbjct: 963 RVCTHRLAYNSLLKIISISQGDTACGDLVVDAILDTQNDLNPNSL 1007
Score = 53 (23.7 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 24/91 (26%), Positives = 36/91 (39%)
Query: 174 PPFVAGYPSQGPVPMPFDATSGSSF-NIRTT-SVSTGEGIPHIGSTQHQKFYGHQGLMLQ 231
PPF GYP +P + S SSF + T S S G I + +
Sbjct: 277 PPF--GYPPTTSSALPNASGSSSSFFGLPTAVSASAGTSFSDISPAAPKASLENNIASNA 334
Query: 232 SPFVDPLHMQYFQHPFGDAYNASVQHRLASS 262
S ++P+ + +F G ++ H ASS
Sbjct: 335 SSLLNPVGLDHFSAASG--WSRDFNHLPASS 363
Score = 44 (20.5 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 16/62 (25%), Positives = 25/62 (40%)
Query: 353 LPQGLNRNTGIYSGWQGQRTFEGQRTFEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFS 412
LP G++ T + + + T R S KHS S K L ++ G+ + F
Sbjct: 599 LPSGVSATT-VATTFSAYGTVSSIRML--SHKHSAFLNFDSVETAKHVLEELNGKRIFFG 655
Query: 413 VD 414
D
Sbjct: 656 SD 657
>POMBASE|SPBC56F2.08c [details] [associations]
symbol:SPBC56F2.08c "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001313 InterPro:IPR012677
InterPro:IPR016024 Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SMART:SM00360
PomBase:SPBC56F2.08c GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166 EMBL:CU329671
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000288 eggNOG:COG5099
OrthoDB:EOG4MWCFG PIR:T40536 RefSeq:NP_596709.1
ProteinModelPortal:O60059 EnsemblFungi:SPBC56F2.08c.1
GeneID:2540913 KEGG:spo:SPBC56F2.08c NextBio:20802028
Uniprot:O60059
Length = 661
Score = 193 (73.0 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 62/246 (25%), Positives = 115/246 (46%)
Query: 431 EEKVSVF-KEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYG 489
+E++ V + +L ++L +D GN V+QKFFE+ S ++ + E++ + + + G
Sbjct: 182 QEEIEVIARSMLDDVAELSSDYLGNTVVQKFFEYCSDPIKEAMLERIAPYLAAIGIHKNG 241
Query: 490 CRVIQKALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAF 548
QK ++V ++ L+++ L + DQ GN+V Q C+ K F+
Sbjct: 242 TWAAQKIIDVASTEKQMDLIVKHLRPYTALLYFDQFGNYVAQCCLR-FKYPKNTFLFEVM 300
Query: 549 RGQVATLSTHPYGCRVIQRVLEH--CSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVL 606
+ +G R I+ LE+ + EQQ +V I+ ++ LA + G + +L
Sbjct: 301 ARHCCEIGQSRFGARAIRACLENENATFEQQA-LVVASIIINSHLLATNSNGMLLLTWLL 359
Query: 607 ERGKSYERTQILS-KLAGKIVQMSQHKYASNVVEKCLEYGDTAE-RELLIEEILGQSEEN 664
+ R ++L+ LA + HK AS ++ K + E R LL++ + E
Sbjct: 360 DNSFFRNRHRLLAIHLATHLHTTCTHKLASTLIFKLINNKQEPESRNLLLKNLF--FSEK 417
Query: 665 DNLLYY 670
DN+L Y
Sbjct: 418 DNVLTY 423
>TAIR|locus:2133534 [details] [associations]
symbol:PUM15 "pumilio 15" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AF076275 eggNOG:COG5099 EMBL:AL161512 IPI:IPI00522940
PIR:T01828 RefSeq:NP_192596.1 UniGene:At.54205
ProteinModelPortal:O81465 SMR:O81465 PRIDE:O81465
EnsemblPlants:AT4G08560.1 GeneID:826417 KEGG:ath:AT4G08560
TAIR:At4g08560 InParanoid:O81465 OMA:ENIRREM PhylomeDB:O81465
Genevestigator:O81465 InterPro:IPR010264 Pfam:PF05938
Uniprot:O81465
Length = 477
Score = 186 (70.5 bits), Expect = 3.7e-11, P = 3.7e-11
Identities = 59/235 (25%), Positives = 110/235 (46%)
Query: 436 VFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQ---VLPLSLQMYGCRV 492
+F ++ H +LM D +G+ V +K E + +Q + + ++ + + L + +G
Sbjct: 183 IFDNLISHVCELMLDYYGHKVFRKLMEKCTDEQITRVLDIVLEEPFEFVRLCVHTHGTHA 242
Query: 493 IQKALEVIELHQKSQLVLELDGHV-MRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQ 551
IQ + + ++ +E +V + +D + VI C +++
Sbjct: 243 IQGLMRSLCSEEQISRFMETLCYVSLLLTKDVIAHRVILFCFNQFSPSHTRYLLEVIVQN 302
Query: 552 VATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYG----------NYV 601
++ GC ++++++ S E + ++ EI+ A L + YG NYV
Sbjct: 303 CYQVAIDQNGCCMLKKLIRQSSRELRDP-LIKEIISIAVRLCGNCYGTLTPKSLLVRNYV 361
Query: 602 TQHVLERGKSYERTQILSK-LAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIE 655
Q++L R K YE T LSK L G VQ+S KY S+VV+KCLE + + R ++ E
Sbjct: 362 VQYLL-RLKDYEVTSALSKHLDGNYVQLSYDKYGSHVVQKCLESREFSSRRIIAE 415
Score = 175 (66.7 bits), Expect = 6.1e-10, P = 6.1e-10
Identities = 57/206 (27%), Positives = 90/206 (43%)
Query: 409 VEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMT-DVFGNYVIQKFFEHGSPD 467
V V HG+ IQ + +EE++S F E L + S L+T DV + VI F SP
Sbjct: 231 VRLCVHTHGTHAIQGLMRSLCSEEQISRFMETLCYVSLLLTKDVIAHRVILFCFNQFSPS 290
Query: 468 QRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNG-- 525
+ L E +V +++ GC +++K + + L+ E+ +R + G
Sbjct: 291 HTRYLLEVIVQNCYQVAIDQNGCCMLKKLIRQSSRELRDPLIKEIISIAVRLCGNCYGTL 350
Query: 526 --------NHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQ 577
N+V+Q + E + G LS YG V+Q+ LE S E
Sbjct: 351 TPKSLLVRNYVVQYLLRLKDYEVTSALSKHLDGNYVQLSYDKYGSHVVQKCLE--SREFS 408
Query: 578 GQCIVDEILESAFALAQDQYGNYVTQ 603
+ I+ E+L +L D YG+YV Q
Sbjct: 409 SRRIIAELLSDIDSLLVDPYGDYVIQ 434
>TAIR|locus:2167771 [details] [associations]
symbol:PUM13 "pumilio 13" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB008267 eggNOG:COG5099 IPI:IPI00522991 RefSeq:NP_199123.1
UniGene:At.55330 ProteinModelPortal:Q9FMH4 SMR:Q9FMH4 PaxDb:Q9FMH4
PRIDE:Q9FMH4 EnsemblPlants:AT5G43090.1 GeneID:834325
KEGG:ath:AT5G43090 TAIR:At5g43090 HOGENOM:HOG000136003
InParanoid:Q9FMH4 OMA:NGERNIW PhylomeDB:Q9FMH4
ProtClustDB:CLSN2686651 Genevestigator:Q9FMH4 Uniprot:Q9FMH4
Length = 527
Score = 180 (68.4 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 57/263 (21%), Positives = 124/263 (47%)
Query: 406 GRIVEFSV--DQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEH 463
GR FS+ D+ S+ +++ + + E +F ++ +LM D FGN V++
Sbjct: 209 GRGSYFSIATDRVWSKELEKTIFVGTKETIDMIFDGLIVGICELMVDPFGNDVVKLLIGK 268
Query: 464 GSPDQR---KELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQL--VLELDGHV-M 517
S +Q ++ + + + + + G IQ L I +Q+ +++ V +
Sbjct: 269 CSSEQIILIVDVVTRHISKFVNICFNPIGTLAIQVLLTSIHERANNQIPRIMDAISSVAL 328
Query: 518 RCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVL--EHCSDE 575
+ R+ N +VI C + + ++ ++ GC ++Q+ E +
Sbjct: 329 QLTRNTNAKYVILACFRMFTSSQCRRLLEVVSQHCYQIAIDQNGCCLLQQCFDKERVPNH 388
Query: 576 QQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYAS 635
+ Q ++ E++E A L + +GNYV Q+V+E +E +++KL ++++KY S
Sbjct: 389 EIRQRLISEVIEHALKLCLNCHGNYVVQYVVELDNQHETDLLVNKLLRNYAHLARNKYGS 448
Query: 636 NVVEKCLEYGDTAERELLIEEIL 658
+VV+K L+ + +L++ ++L
Sbjct: 449 HVVQKLLKLRGI-DSKLIVVDLL 470
Score = 155 (59.6 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 58/259 (22%), Positives = 114/259 (44%)
Query: 392 KSSNAQKFELSDIAGR----IVEFSVDQHGSRFIQQKLE--HCSAEEKVSVFKEVLPH-A 444
K S+ Q + D+ R V + G+ IQ L H A ++ + + A
Sbjct: 268 KCSSEQIILIVDVVTRHISKFVNICFNPIGTLAIQVLLTSIHERANNQIPRIMDAISSVA 327
Query: 445 SKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKAL--EVIEL 502
+L + YVI F + Q + L E + +++ GC ++Q+ E +
Sbjct: 328 LQLTRNTNAKYVILACFRMFTSSQCRRLLEVVSQHCYQIAIDQNGCCLLQQCFDKERVPN 387
Query: 503 HQ-KSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 561
H+ + +L+ E+ H ++ + +GN+V+Q +E + + +++ A L+ + YG
Sbjct: 388 HEIRQRLISEVIEHALKLCLNCHGNYVVQYVVELDNQHETDLLVNKLLRNYAHLARNKYG 447
Query: 562 CRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKL 621
V+Q++L+ + + IV ++L L D +GNYV Q K R + +
Sbjct: 448 SHVVQKLLKLRGIDSK--LIVVDLLRGIDTLLLDPFGNYVIQTAWFVSKEDVRQMLRYYI 505
Query: 622 AGKIVQMSQHKYASNVVEK 640
I M +K+ + ++EK
Sbjct: 506 ERNIRLMRCNKFGNKILEK 524
Score = 136 (52.9 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 44/180 (24%), Positives = 87/180 (48%)
Query: 393 SSNAQKFELSDIAGRIVEFSVDQHGSRFIQQ---KLEHCSAEEKVSVFKEVLPHASKLMT 449
SS ++ L ++ + ++DQ+G +QQ K + E + + EV+ HA KL
Sbjct: 349 SSQCRRL-LEVVSQHCYQIAIDQNGCCLLQQCFDKERVPNHEIRQRLISEVIEHALKLCL 407
Query: 450 DVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLV 509
+ GNYV+Q E + + L KL+ L+ YG V+QK L++ + K +V
Sbjct: 408 NCHGNYVVQYVVELDNQHETDLLVNKLLRNYAHLARNKYGSHVVQKLLKLRGIDSKL-IV 466
Query: 510 LELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAF-RGQVATLSTHPYGCRVIQRV 568
++L + + D GN+VIQ V E + ++ + + + + +G ++++++
Sbjct: 467 VDLLRGIDTLLLDPFGNYVIQTAW-FVSKEDVRQMLRYYIERNIRLMRCNKFGNKILEKL 525
>ZFIN|ZDB-GENE-030131-9808 [details] [associations]
symbol:si:ch211-241o7.5 "si:ch211-241o7.5"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR012959 InterPro:IPR016024
Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
ZFIN:ZDB-GENE-030131-9808 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 GeneTree:ENSGT00390000015757
EMBL:CR628386 IPI:IPI00799550 Ensembl:ENSDART00000127277
ArrayExpress:E9QJ83 Bgee:E9QJ83 Uniprot:E9QJ83
Length = 601
Score = 172 (65.6 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 63/285 (22%), Positives = 127/285 (44%)
Query: 389 EELKSSNAQKFELSDIA-GRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKL 447
++ K + K EL D+ G+I + +R +Q ++ S +++ VF E+ H +L
Sbjct: 134 DKQKRTKLMK-ELQDLVKGKIKTIAFAHDSTRVLQCFIQFGSDKQRKEVFDELKEHIVEL 192
Query: 448 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKAL-EVIELHQKS 506
+ +++KF +GS +Q E+ G+V + V++ A + L Q+
Sbjct: 193 SKSKYARNIVKKFLMYGSKEQVGEVMLAFKGKVRQMLRHSEASSVVEYAYNDKAILSQRL 252
Query: 507 QLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFR------GQVATLSTHPY 560
L EL G+ ++ + ++K +E P K+E I+ + Q + H
Sbjct: 253 MLTEELYGNTFTVLKS-SVCPTLEKVLEANPG-KLESILDEMKQILTPMAQKEAVIKHSL 310
Query: 561 GCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSK 620
+V EH D+Q+ + +++ I E+ +A G VT H L G + +R I+
Sbjct: 311 VHKVFLDFFEHAPDKQRTE-MIESIREAVVYMAHTHDGARVTMHCLWHGTTKDRKVIVKT 369
Query: 621 LAGKIVQMSQHKYASNVVEKCLEYGDTAE--RELLIEEILGQSEE 663
+ I + + +YA V+ + D + ++++I E++ E
Sbjct: 370 MKSYIAKFAMGEYAHLVLLAAFDCIDDTKLVKQIIISEMVSSLSE 414
Score = 157 (60.3 bits), Expect = 8.4e-08, P = 8.4e-08
Identities = 66/322 (20%), Positives = 142/322 (44%)
Query: 354 PQGLNRNTGIYSGWQGQRTFEGQRTFE---DSKKHSFLEELKSSNAQKFELS-DIAGRIV 409
PQ NR + +R F G R + D +K +E K ++ +L+ R
Sbjct: 56 PQKFNRKP-TDGKFAKKRKFPGDRIKQEEGDERKKPKWDEFKQKK-KELKLNRQQTDRKE 113
Query: 410 EFSVDQHGSRFIQQ-KLEHCSAEEKVSVFKEVLPHAS-KLMTDVFGN---YVIQKFFEHG 464
+ + + + + + C +++ + KE+ K+ T F + V+Q F + G
Sbjct: 114 SYQIVSRAKQVWEMVRRKDCDKQKRTKLMKELQDLVKGKIKTIAFAHDSTRVLQCFIQFG 173
Query: 465 SPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQN 524
S QRKE+ ++L ++ LS Y +++K L Q +++L G V + +R
Sbjct: 174 SDKQRKEVFDELKEHIVELSKSKYARNIVKKFLMYGSKEQVGEVMLAFKGKVRQMLRHSE 233
Query: 525 GNHVIQKCI--ECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIV 582
+ V++ + + ++++ + G T+ C +++VLE ++ + + I+
Sbjct: 234 ASSVVEYAYNDKAILSQRL-MLTEELYGNTFTVLKSSV-CPTLEKVLE--ANPGKLESIL 289
Query: 583 DEILESAFALAQDQYGNYVTQHVL---------ERGKSYERTQILSKLAGKIVQMSQHKY 633
DE+ + +AQ + V +H L E +RT+++ + +V M+
Sbjct: 290 DEMKQILTPMAQKEA---VIKHSLVHKVFLDFFEHAPDKQRTEMIESIREAVVYMAHTHD 346
Query: 634 ASNVVEKCLEYGDTAERELLIE 655
+ V CL +G T +R+++++
Sbjct: 347 GARVTMHCLWHGTTKDRKVIVK 368
>UNIPROTKB|H0YDQ6 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 SMART:SM00025
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957 ChiTaRS:PUM1
Ensembl:ENST00000530669 Bgee:H0YDQ6 Uniprot:H0YDQ6
Length = 76
Score = 147 (56.8 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 30/52 (57%), Positives = 37/52 (71%)
Query: 543 FIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQ 594
FII AF+GQV LSTHPYGCRVIQR+LEHC +Q I++E+ + L Q
Sbjct: 1 FIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLP-ILEELHQHTEQLVQ 51
>TAIR|locus:2168529 [details] [associations]
symbol:PUM16 "pumilio 16" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB016890 IPI:IPI00533013 RefSeq:NP_200736.1 UniGene:At.65693
ProteinModelPortal:Q9FIE9 PRIDE:Q9FIE9 EnsemblPlants:AT5G59280.1
GeneID:836046 KEGG:ath:AT5G59280 TAIR:At5g59280
HOGENOM:HOG000152208 OMA:CTRNIAD Genevestigator:Q9FIE9
Uniprot:Q9FIE9
Length = 332
Score = 165 (63.1 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 42/156 (26%), Positives = 74/156 (47%)
Query: 507 QLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+ ++ L HVM D+ ++V + + +K E + L+ YGC +
Sbjct: 116 EAIMRLFIHVMT---DKYASYVTIQGMRVFQQDKRELMYDQILRYACFLAGDQYGCIALN 172
Query: 567 RVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIV 626
++ D ++D + +A L+ D YGN+V QHVL+ S I KL G V
Sbjct: 173 EIITDLDDPYYRDQLLDIVANNALLLSNDAYGNFVVQHVLKLRDSRCTRNIADKLCGYCV 232
Query: 627 QMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE 662
++S KY S +VE+ LE GD ++++ + ++E
Sbjct: 233 ELSFKKYGSYIVERLLEAGDVPMATVVLDLLACKTE 268
Score = 147 (56.8 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 46/200 (23%), Positives = 94/200 (47%)
Query: 412 SVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKE 471
+ +++GS+ +Q KL S + V F+ ++ +MTD + +YV + D+R+
Sbjct: 91 TTNKNGSKTLQ-KLMGMSDDMDVFFFEAIMRLFIHVMTDKYASYVTIQGMRVFQQDKREL 149
Query: 472 LAEKLVGQVLPLSLQMYGCRVIQKAL-EVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQ 530
+ ++++ L+ YGC + + + ++ + + + QL+ + + + D GN V+Q
Sbjct: 150 MYDQILRYACFLAGDQYGCIALNEIITDLDDPYYRDQLLDIVANNALLLSNDAYGNFVVQ 209
Query: 531 KCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEIL---E 587
++ + I G LS YG +++R+LE D ++D + E
Sbjct: 210 HVLKLRDSRCTRNIADKLCGYCVELSFKKYGSYIVERLLE-AGDVPMATVVLDLLACKTE 268
Query: 588 SAFALAQDQYGNYVTQHVLE 607
LA+ +YGN+V LE
Sbjct: 269 MLIRLARSEYGNFVVCKALE 288
>ASPGD|ASPL0000066087 [details] [associations]
symbol:AN7474 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001313 InterPro:IPR012677
InterPro:IPR016024 Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SMART:SM00360
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304
eggNOG:COG5099 OrthoDB:EOG4MWCFG RefSeq:XP_680743.1
ProteinModelPortal:Q5AW56 EnsemblFungi:CADANIAT00000567
GeneID:2869548 KEGG:ani:AN7474.2 HOGENOM:HOG000182368 OMA:RACLESH
Uniprot:Q5AW56
Length = 1175
Score = 168 (64.2 bits), Expect = 8.7e-09, Sum P(2) = 8.7e-09
Identities = 59/284 (20%), Positives = 130/284 (45%)
Query: 380 EDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEH--CSAEEKVSVF 437
E +K ++ +++ S E+ IA D R I++++++ CS +E
Sbjct: 619 ETTKINASIQQAISYQEFSDEIPPIAEPNQTRMFDAPRLRDIRKRIDNGNCSIQEIEETA 678
Query: 438 KEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKAL 497
+LP ++L +D GN V+QK FE+ S ++ + + + + + G QK +
Sbjct: 679 IAMLPEIAELASDYLGNTVVQKLFEYSSEPIKERILVPIAPHLGEIGVHKNGTWAAQKII 738
Query: 498 EVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLS 556
+V + + +++++ L + + DQ GN+V+Q C+ + +F+ ++ ++
Sbjct: 739 DVAKTPAQMRMIVDALRPYTVPLFLDQYGNYVLQCCLR-FGSPYNDFVFETMLSRMWEIA 797
Query: 557 THPYGCRVIQRVLE-HCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGK-SYER 614
+G R ++ LE H + + Q + + I + LA + G + L+ + R
Sbjct: 798 QGRFGARAMRACLESHHATKDQQRMLAAAIALHSVQLATNANGALLLTWFLDTCTFPHRR 857
Query: 615 TQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAE-RELLIEEI 657
T + +L +V + HK A V K + + E R ++++ +
Sbjct: 858 TVLAPRLVPHLVHLCTHKVAYLTVLKVINQRNEPEARNIVLKAL 901
Score = 52 (23.4 bits), Expect = 8.7e-09, Sum P(2) = 8.7e-09
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 154 AGVYPSQYNVGGYALNSA-LFPPFVAGYPSQGPVPMPFDAT--SGSSFNIRT-TSVSTG 208
AG PS+++ G LN A L PFV+ P PF T SG ++ T++ G
Sbjct: 138 AGTVPSRFSPVG-VLNEANLQQPFVSQSSRPTPSTSPFRPTGMSGIDTGVKPPTTIGGG 195
>TAIR|locus:2167786 [details] [associations]
symbol:PUM14 "pumilio 14" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005634 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB008267 eggNOG:COG5099 HOGENOM:HOG000136003
ProtClustDB:CLSN2686651 EMBL:DQ056705 IPI:IPI00526385
RefSeq:NP_199125.2 UniGene:At.55331 ProteinModelPortal:Q4PSD1
SMR:Q4PSD1 PRIDE:Q4PSD1 EnsemblPlants:AT5G43110.1 GeneID:834328
KEGG:ath:AT5G43110 TAIR:At5g43110 InParanoid:Q4PSD1
PhylomeDB:Q4PSD1 Genevestigator:Q4PSD1 Uniprot:Q4PSD1
Length = 518
Score = 168 (64.2 bits), Expect = 2.2e-08, Sum P(3) = 2.2e-08
Identities = 63/270 (23%), Positives = 119/270 (44%)
Query: 399 FELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQ 458
F+ + F+ D+ S + + + E +++ ++ +LM D +G+ V+Q
Sbjct: 196 FDYNQCQASFSAFAKDKEMSERLGMSIFQGTKETVDAIYNGLIGDICELMVDPYGSDVVQ 255
Query: 459 KFFEHGSPDQRKELAEKLVGQVLP---LSLQMYGCRVIQKALEVIELHQKSQLVLELDGH 515
S +Q +L + + Q+ + + G IQ L I K Q+ +D
Sbjct: 256 LLMRRCSSEQIVQLVDIVTQQMFQFVNICIDSLGTNAIQVLLTCINERAKDQIPRIVD-- 313
Query: 516 VMRCVRDQ--NGNH---VIQKCIECVPAE---KIEFIISAFRGQVATLSTHPYGCRVIQR 567
V+R V Q NH VI C P +E I+ Q+A + H GC ++Q
Sbjct: 314 VVRTVALQLSKSNHAIFVILACFRLFPLHCRLLLELIVQNCH-QIA-IDQH--GCCLLQL 369
Query: 568 VL--EHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKI 625
+ + + Q ++ E + +A L + YGNYV Q+++E Y ++ +L G
Sbjct: 370 CFNKDRVPNLEIRQRLIMEAIANALRLCLNCYGNYVVQYIVELNNRYLIDALVRQLIGNY 429
Query: 626 VQMSQHKYASNVVEKCLEYGDTAERELLIE 655
++++KY S+ V+K L+ R ++I+
Sbjct: 430 AHLARNKYGSHAVQKLLKLRWIDSRVIVID 459
Score = 144 (55.7 bits), Expect = 9.1e-06, Sum P(3) = 9.1e-06
Identities = 62/260 (23%), Positives = 114/260 (43%)
Query: 392 KSSNAQKFELSDIAGR----IVEFSVDQHGSRFIQQKLEHCS--AEEKVSVFKEVLPH-A 444
+ S+ Q +L DI + V +D G+ IQ L + A++++ +V+ A
Sbjct: 260 RCSSEQIVQLVDIVTQQMFQFVNICIDSLGTNAIQVLLTCINERAKDQIPRIVDVVRTVA 319
Query: 445 SKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALE---VIE 501
+L +VI F P + L E +V +++ +GC ++Q V
Sbjct: 320 LQLSKSNHAIFVILACFRL-FPLHCRLLLELIVQNCHQIAIDQHGCCLLQLCFNKDRVPN 378
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 561
L + +L++E + +R + GN+V+Q +E I+ ++ G A L+ + YG
Sbjct: 379 LEIRQRLIMEAIANALRLCLNCYGNYVVQYIVELNNRYLIDALVRQLIGNYAHLARNKYG 438
Query: 562 CRVIQRVLE-HCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSK 620
+Q++L+ D + IV ++L L D +GNYV Q K R +
Sbjct: 439 SHAVQKLLKLRWIDSR---VIVIDLLREIDTLLLDPFGNYVIQTAWFVSKDDVRRMLRYH 495
Query: 621 LAGKIVQMSQHKYASNVVEK 640
+ I M +K+ + V+EK
Sbjct: 496 IERNIPMMRCNKFGNKVLEK 515
Score = 39 (18.8 bits), Expect = 2.2e-08, Sum P(3) = 2.2e-08
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 377 RTFEDSKKHSFLEELKSS 394
R E+ ++H++L +L+ S
Sbjct: 119 RELEELQRHNYLNQLRMS 136
Score = 39 (18.8 bits), Expect = 2.2e-08, Sum P(3) = 2.2e-08
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 265 NGALADPSSKKEPIVAAYMGDQNLQSSLNGG 295
N +A SS+ +PI + + +N + +N G
Sbjct: 24 NLTMASSSSQPQPISSPFHQPENQVNRVNPG 54
>TAIR|locus:2164165 [details] [associations]
symbol:PUM18 "pumilio 18" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0007059 "chromosome segregation"
evidence=RCA] [GO:0007129 "synapsis" evidence=RCA] [GO:0007131
"reciprocal meiotic recombination" evidence=RCA] [GO:0042138
"meiotic DNA double-strand break formation" evidence=RCA]
InterPro:IPR001313 InterPro:IPR016024 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:AB019231
eggNOG:COG5099 HOGENOM:HOG000152208 EMBL:DQ056729 IPI:IPI00533181
RefSeq:NP_200819.1 UniGene:At.55636 ProteinModelPortal:Q9LVG3
SMR:Q9LVG3 EnsemblPlants:AT5G60110.1 GeneID:836133
KEGG:ath:AT5G60110 TAIR:At5g60110 InParanoid:Q9LVG3 OMA:EMISNSD
PhylomeDB:Q9LVG3 ProtClustDB:CLSN2916299 Genevestigator:Q9LVG3
Uniprot:Q9LVG3
Length = 327
Score = 153 (58.9 bits), Expect = 6.9e-08, P = 6.9e-08
Identities = 62/269 (23%), Positives = 119/269 (44%)
Query: 386 SFLEELKSSNAQKFELSDIAGRIVEFS-------VDQHGSRFIQQKLEHCSAEEKVSVF- 437
S+ +E+ SN+ K EL +A + S + GSR +Q+ L + V F
Sbjct: 56 SYFKEM-ISNSDKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLL---GKSDDVDAFF 111
Query: 438 -KEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKA 496
+L + TD + +YV + +K L E+++ L L+ +GC +
Sbjct: 112 CAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHALDLACDQHGCIALNDI 171
Query: 497 L-EVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATL 555
+ + + + + QL+ + + +R D +GN V+Q + + I I GQ L
Sbjct: 172 ITDADDPYYRDQLLELVASNALRLSNDASGNFVVQHVLTLYDSRCIHNIAVNLYGQCIEL 231
Query: 556 STHPYGCRVIQRVLEHCSDEQQGQCIVDEIL----ESAFALAQDQYGNYVTQHVLERGKS 611
S YG +++++LE E+ +V E+L + LA++++GN+V L R
Sbjct: 232 SFKKYGSYIVEKLLEV---EESMVVVVVELLGCDGDRLMRLARNEFGNFVVVKAL-RFTK 287
Query: 612 YERTQILSKLAGKI---VQMSQHKYASNV 637
R + L K+ +++ + + SN+
Sbjct: 288 MSRMDLFWGLVQKLMPFIRLLRRSHGSNI 316
Score = 121 (47.7 bits), Expect = 0.00026, P = 0.00026
Identities = 33/126 (26%), Positives = 61/126 (48%)
Query: 555 LSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYER 614
L+ +GC + ++ D +++ + +A L+ D GN+V QHVL S
Sbjct: 158 LACDQHGCIALNDIITDADDPYYRDQLLELVASNALRLSNDASGNFVVQHVLTLYDSRCI 217
Query: 615 TQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLYYKSRL 674
I L G+ +++S KY S +VEK LE ++ +++ E+LG + D L+
Sbjct: 218 HNIAVNLYGQCIELSFKKYGSYIVEKLLEVEESMV--VVVVELLGC--DGDRLMRLARNE 273
Query: 675 AGSMLI 680
G+ ++
Sbjct: 274 FGNFVV 279
>SGD|S000003851 [details] [associations]
symbol:JSN1 "Member of the Puf family of RNA-binding
proteins" species:4932 "Saccharomyces cerevisiae" [GO:0051654
"establishment of mitochondrion localization" evidence=IMP]
[GO:0034629 "cellular protein complex localization" evidence=IMP]
[GO:0032473 "external side of mitochondrial outer membrane"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISS;IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=IGI] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001313 InterPro:IPR012677 InterPro:IPR016024
Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SMART:SM00360 SGD:S000003851
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BK006943
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:L47993
GO:GO:0051654 GO:GO:0000288 EMBL:Z49591 eggNOG:COG5099
GO:GO:0034629 EMBL:L43493 PIR:S57112 RefSeq:NP_012624.1
ProteinModelPortal:P47135 SMR:P47135 DIP:DIP-1281N IntAct:P47135
MINT:MINT-405099 STRING:P47135 PaxDb:P47135 PeptideAtlas:P47135
EnsemblFungi:YJR091C GeneID:853553 KEGG:sce:YJR091C CYGD:YJR091c
GeneTree:ENSGT00690000103065 HOGENOM:HOG000113136 OMA:CLEAHDI
OrthoDB:EOG4MWCFG NextBio:974290 Genevestigator:P47135
GermOnline:YJR091C GO:GO:0032473 Uniprot:P47135
Length = 1091
Score = 167 (63.8 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 56/232 (24%), Positives = 101/232 (43%)
Query: 440 VLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEV 499
+L +L +D GN ++QK FEH S + + K + + + G QK + +
Sbjct: 618 MLDELPELSSDYLGNTIVQKLFEHSSDIIKDIMLRKTSKYLTSMGVHKNGTWACQKMITM 677
Query: 500 IEL-HQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTH 558
Q Q+ + + + DQ GN+VIQ C+ +FI + + +
Sbjct: 678 AHTPRQIMQVTQGVKDYCTPLINDQFGNYVIQ-CVLKFGFPWNQFIFESIIANFWVIVQN 736
Query: 559 PYGCRVIQRVLEHCSDEQQGQCIVDEILESAFA--LAQDQYGNYVTQHVLERGKSYERTQ 616
YG R ++ LE Q IV + +A L+ + G + L+ R
Sbjct: 737 RYGARAVRACLEAHDIVTPEQSIVLSAMIVTYAEYLSTNSNGALLVTWFLDTSVLPNRHS 796
Query: 617 ILS-KLAGKIVQMSQHKYASNVVEKCLEY-GDTAERELLIEEILGQSEENDN 666
IL+ +L +IV++ H+ AS + K L Y GD R+++++ + G +D+
Sbjct: 797 ILAPRLTKRIVELCGHRLASLTILKVLNYRGDDNARKIILDSLFGNVNAHDS 848
Score = 40 (19.1 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 31 SNNGPAAVSFSSSP-CPDGTETSRNPRIDDTNSK 63
+++G FSSS T S+ PR + SK
Sbjct: 80 NSHGKNGAEFSSSNNSSQSTVASKTPRASPSRSK 113
Score = 38 (18.4 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 16/61 (26%), Positives = 23/61 (37%)
Query: 2 NISEAPEANGSADVHVDPCVMDPQDIALISNNGPAAVSFSSSPCPDGTETSRNPRIDDTN 61
N+S PE +DP + P NNG + P G+ SR + +T
Sbjct: 11 NLSNIPEV-------IDPGITIPIYEEEYENNGESNSQLQQQPQKLGSYRSRAGKFSNTL 63
Query: 62 S 62
S
Sbjct: 64 S 64
>CGD|CAL0000283 [details] [associations]
symbol:orf19.4262 species:5476 "Candida albicans" [GO:0032473
"external side of mitochondrial outer membrane" evidence=IEA]
[GO:0034629 "cellular protein complex localization" evidence=IEA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] [GO:0051654
"establishment of mitochondrion localization" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 CGD:CAL0000283 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 EMBL:AACQ01000021
EMBL:AACQ01000022 eggNOG:COG5099 RefSeq:XP_720570.1
RefSeq:XP_720698.1 ProteinModelPortal:Q5AGB7 GeneID:3637600
GeneID:3637766 KEGG:cal:CaO19.11738 KEGG:cal:CaO19.4262
Uniprot:Q5AGB7
Length = 492
Score = 153 (58.9 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 63/243 (25%), Positives = 103/243 (42%)
Query: 440 VLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLP-LSLQMYGCRVIQKALE 498
+L +L D GN ++QK F K + K V L L + G IQK +
Sbjct: 13 MLDELPELSYDYLGNTIVQKLFTLVESSLVKLMMVKEVAPYLTQLGIHKNGTWAIQKIIN 72
Query: 499 VIEL-HQKSQLV-LELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLS 556
+ +Q+ L+ L + ++ DQ GN+VIQ CI+ + +F+ A +S
Sbjct: 73 LCHSDYQQMYLIGASLKPYAVKLFNDQFGNYVIQGCIK-FGSPFNDFVFEAMLDNFLEIS 131
Query: 557 THPYGCRVIQRVLEHCSDEQQGQCIVDE--------ILESAFALAQDQYGNYVTQHVLER 608
+G R I+ +LE C D + +E I+E A LA + G+ + L+
Sbjct: 132 VGRFGARCIRTILESCHDSSSTSPVTNEQVLLVAGLIIEFANELAVNSNGSLLITWYLDT 191
Query: 609 GKSYE-RTQIL-SKLAGKIVQMSQHKYASNVVEKCLEYG-DTAERELLIEEILGQSEEND 665
K + + ++L SK I + HK A+ V K L D R ++ I E +
Sbjct: 192 FKDCDSKIELLMSKFLPNIRALCVHKLANLTVLKILNNRIDDKSRVATMDAIFNNKETLE 251
Query: 666 NLL 668
+L
Sbjct: 252 YIL 254
Score = 138 (53.6 bits), Expect = 7.2e-06, P = 7.2e-06
Identities = 49/213 (23%), Positives = 97/213 (45%)
Query: 391 LKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAE--EKVSVFKEVLPHASKLM 448
++SS + + ++A + + + ++G+ IQ+ + C ++ + + + P+A KL
Sbjct: 37 VESSLVKLMMVKEVAPYLTQLGIHKNGTWAIQKIINLCHSDYQQMYLIGASLKPYAVKLF 96
Query: 449 TDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKS-- 506
D FGNYVIQ + GSP + E ++ L +S+ +G R I+ LE H S
Sbjct: 97 NDQFGNYVIQGCIKFGSPFN-DFVFEAMLDNFLEISVGRFGARCIRTILE--SCHDSSST 153
Query: 507 -----QLVLELDGHVMRCVRD----QNGNHVIQKCIECVPA--EKIEFIISAFRGQVATL 555
+ VL + G ++ + NG+ +I ++ KIE ++S F + L
Sbjct: 154 SPVTNEQVLLVAGLIIEFANELAVNSNGSLLITWYLDTFKDCDSKIELLMSKFLPNIRAL 213
Query: 556 STHPYGCRVIQRVLEHCSDEQQGQCIVDEILES 588
H + ++L + D++ +D I +
Sbjct: 214 CVHKLANLTVLKILNNRIDDKSRVATMDAIFNN 246
>TAIR|locus:2144010 [details] [associations]
symbol:PUM19 "pumilio 19" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:AB026632
eggNOG:COG5099 HOGENOM:HOG000152208 IPI:IPI00541936
RefSeq:NP_200826.1 UniGene:At.66750 ProteinModelPortal:Q9LSS8
SMR:Q9LSS8 EnsemblPlants:AT5G60180.1 GeneID:836140
KEGG:ath:AT5G60180 TAIR:At5g60180 InParanoid:Q9LSS8 OMA:NPTETSG
PhylomeDB:Q9LSS8 Genevestigator:Q9LSS8 Uniprot:Q9LSS8
Length = 327
Score = 141 (54.7 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 60/269 (22%), Positives = 117/269 (43%)
Query: 386 SFLEELKSSNAQKFELSDIAGRIVEFS-------VDQHGSRFIQQKLEHCSAEEKVSVF- 437
S+ +E+ S + K EL +A + S + GSR +Q+ L + V F
Sbjct: 56 SYFKEM-ISKSDKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLL---GKSDDVDAFF 111
Query: 438 -KEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKA 496
+L + TD + +YV + +K L E+++ L L+ +GC +
Sbjct: 112 CAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHALDLACDQHGCIALNDI 171
Query: 497 L-EVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATL 555
+ + + + + QL+ + + +R D +GN V+Q + + I I GQ L
Sbjct: 172 ITDADDPYYRDQLLELVVSNALRLSNDASGNFVVQHVLTLYDSRCIHNIAVNLYGQCIEL 231
Query: 556 STHPYGCRVIQRVLEHCSDEQQGQCIVDEIL----ESAFALAQDQYGNYVTQHVLERGKS 611
S YG +++++LE E+ +V E+L + LA++++GN+V L K
Sbjct: 232 SFKKYGSYIVEKLLEV---EESMVVVVVELLGCDGDRLMRLARNEFGNFVVVKALRFTKE 288
Query: 612 YERTQILSKLAGKI---VQMSQHKYASNV 637
R + L K+ + + + + +N+
Sbjct: 289 M-RMDLFWGLVQKLMPFIHLLRRSHGNNI 316
Score = 123 (48.4 bits), Expect = 0.00015, P = 0.00015
Identities = 33/126 (26%), Positives = 62/126 (49%)
Query: 555 LSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYER 614
L+ +GC + ++ D +++ ++ +A L+ D GN+V QHVL S
Sbjct: 158 LACDQHGCIALNDIITDADDPYYRDQLLELVVSNALRLSNDASGNFVVQHVLTLYDSRCI 217
Query: 615 TQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLYYKSRL 674
I L G+ +++S KY S +VEK LE ++ +++ E+LG + D L+
Sbjct: 218 HNIAVNLYGQCIELSFKKYGSYIVEKLLEVEESMV--VVVVELLGC--DGDRLMRLARNE 273
Query: 675 AGSMLI 680
G+ ++
Sbjct: 274 FGNFVV 279
>DICTYBASE|DDB_G0288551 [details] [associations]
symbol:DDB_G0288551 "pumilio RNA-binding
region-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR001313 InterPro:IPR012959 InterPro:IPR016024
Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
dictyBase:DDB_G0288551 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 eggNOG:COG5099 KO:K14844
EMBL:AAFI02000116 RefSeq:XP_636672.1 ProteinModelPortal:Q54IS5
STRING:Q54IS5 EnsemblProtists:DDB0238675 GeneID:8626685
KEGG:ddi:DDB_G0288551 OMA:LLRNDHI ProtClustDB:CLSZ2429870
Uniprot:Q54IS5
Length = 679
Score = 145 (56.1 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 54/287 (18%), Positives = 126/287 (43%)
Query: 388 LEELKSSNAQKFELSD-----IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLP 442
++E+K S+ ++ L + + G ++ V SR +Q L++ + ++ VFKE+
Sbjct: 120 IKEIKLSSEERATLIEQLTQKLKGNVLNVIVKHDASRVVQTLLKYGNEAQREIVFKELKD 179
Query: 443 HASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKAL-EVIE 501
+ +G ++I K ++G+ +QR + ++ G+ + + V++ E+
Sbjct: 180 QELTISKTQYGRFLILKLLKYGTEEQRNTIIKQFYGKFVSMISHKESSSVVEYIFSEIAS 239
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 561
QK+ ++ E G R + + + +E P +K E II+ Q+ + + G
Sbjct: 240 KLQKTHIIEEFYGPEYRLFKTEQPR-TLDSIVESSPQKK-EPIITYLSSQLTKILSSK-G 296
Query: 562 CRVIQ------RVLEHCSDEQQGQCI-VDEIL-ESAFALAQDQYGNYVTQHVLERGKSYE 613
R++Q ++E C+ + E L E + + G+ V +V+
Sbjct: 297 ERLVQFTIIQTLLIEFFKHASPDNCVDMSETLGELLLPMIHSKEGSQVAYYVISYATPKT 356
Query: 614 RTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQ 660
R I+ L I +++ +Y + + L+ D + +++I+ + +
Sbjct: 357 RKSIVKSLKDFIPKIASEEYGFLALVRLLDVTD--DTQMIIKSVFNE 401
>SGD|S000006246 [details] [associations]
symbol:PUF2 "Member of the PUF protein family" species:4932
"Saccharomyces cerevisiae" [GO:0003729 "mRNA binding"
evidence=ISS;IDA] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=IGI] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001313 InterPro:IPR012677 InterPro:IPR016024
Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SMART:SM00360 SGD:S000006246
GO:GO:0005737 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:Z71255
EMBL:BK006949 EMBL:Z49219 GO:GO:0000288 EMBL:Z68111 eggNOG:COG5099
EMBL:Z73616 GeneTree:ENSGT00690000103065 HOGENOM:HOG000113136
OrthoDB:EOG4MWCFG PIR:S54067 RefSeq:NP_015367.1
ProteinModelPortal:Q12221 SMR:Q12221 IntAct:Q12221
MINT:MINT-4505998 STRING:Q12221 PaxDb:Q12221 EnsemblFungi:YPR042C
GeneID:856155 KEGG:sce:YPR042C CYGD:YPR042c NextBio:981289
Genevestigator:Q12221 GermOnline:YPR042C Uniprot:Q12221
Length = 1075
Score = 141 (54.7 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 69/261 (26%), Positives = 108/261 (41%)
Query: 419 RFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVG 478
+F L E+ V + LP +L +D GN VIQK FE+ S R + K
Sbjct: 559 QFDSNSLSTIEMEQLAIVMLDQLP---ELSSDYLGNTVIQKLFENSSNIIRDIMLRKCNK 615
Query: 479 QVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIEC-V 536
+ + + G V QK +++ ++ LV + + DQ GN+VIQ ++
Sbjct: 616 YLTSMGVHKNGTWVCQKIIKMANTPRQINLVTSGVSDYCTPLFNDQFGNYVIQGILKFGF 675
Query: 537 PAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQC--IVDEILESAFALAQ 594
P FI + T+ + YG R ++ LE S Q Q I I+ + LA
Sbjct: 676 PWNS--FIFESVLSHFWTIVQNRYGSRAVRACLEADSIITQCQLLTITSLIIVLSPYLAT 733
Query: 595 DQYGNYVTQHVLERGKSYERTQIL-SKLAGK-IVQMSQHKYASNVVEKCLEYGDTAEREL 652
D G + +L+ + IL KL K +V++ HK S V K L E L
Sbjct: 734 DTNGTLLITWLLDTCTLPNKNLILCDKLVNKNLVKLCCHKLGSLTVLKILNLRGGEEEAL 793
Query: 653 ----LIEEILGQSEENDNLLY 669
+I I +D++L+
Sbjct: 794 SKNKIIHAIFDGPISSDSILF 814
>UNIPROTKB|Q15397 [details] [associations]
symbol:KIAA0020 "Pumilio domain-containing protein
KIAA0020" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001313
InterPro:IPR012959 InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005783 SUPFAM:SSF48371
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:CH471071 EMBL:AK292169 EMBL:AL354723 EMBL:AL589675
EMBL:BC016137 EMBL:D13645 EMBL:AF490254 EMBL:CR456957 EMBL:AY047588
EMBL:AY047589 EMBL:AY047590 IPI:IPI00791325 RefSeq:NP_055693.4
UniGene:Hs.493309 ProteinModelPortal:Q15397 IntAct:Q15397
MINT:MINT-1404790 STRING:Q15397 PhosphoSite:Q15397 DMDM:81175177
SWISS-2DPAGE:Q15397 PaxDb:Q15397 PRIDE:Q15397 DNASU:9933
Ensembl:ENST00000397885 GeneID:9933 KEGG:hsa:9933 UCSC:uc003zhp.1
CTD:9933 GeneCards:GC09M002720 HGNC:HGNC:29676 HPA:HPA002353
MIM:609960 neXtProt:NX_Q15397 PharmGKB:PA134895115 eggNOG:NOG273657
HOVERGEN:HBG052166 InParanoid:Q15397 KO:K14844 OMA:RKDCDKE
OrthoDB:EOG4X3H13 ChiTaRS:KIAA0020 GenomeRNAi:9933 NextBio:37470
Bgee:Q15397 CleanEx:HS_KIAA0020 Genevestigator:Q15397
GermOnline:ENSG00000080608 Uniprot:Q15397
Length = 648
Score = 142 (55.0 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 52/264 (19%), Positives = 114/264 (43%)
Query: 404 IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEH 463
I G+I + +R IQ +++ + E++ F+E+ +L + +++KF +
Sbjct: 166 IQGKIKTIAFAHDSTRVIQCYIQYGNEEQRKQAFEELRDDLVELSKAKYSRNIVKKFLMY 225
Query: 464 GSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKAL-EVIELHQKSQLVLELDGHVMRCVRD 522
GS Q E+ G V + +++ A + L Q++ L EL G+ + +
Sbjct: 226 GSKPQIAEIIRSFKGHVRKMLRHAEASAIVEYAYNDKAILEQRNMLTEELYGNTFQLYKS 285
Query: 523 QNGNHVIQKCIECVPAEKIEFIISAFR------GQVATLSTHPYGCRVIQRVLEHCSDEQ 576
+ + + K +E P EK+E I+ + Q + H +V + +
Sbjct: 286 AD-HRTLDKVLEVQP-EKLELIMDEMKQILTPMAQKEAVIKHSLVHKVFLDFFTYAPPKL 343
Query: 577 QGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASN 636
+ + +++ I E+ LA G V H L G +R I+ + + +++ +Y+
Sbjct: 344 RSE-MIEAIREAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEKVANGQYSHL 402
Query: 637 VVEKCLEYGDTAE--RELLIEEIL 658
V+ + D + ++++I EI+
Sbjct: 403 VLLAAFDCIDDTKLVKQIIISEII 426
Score = 41 (19.5 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 9/38 (23%), Positives = 20/38 (52%)
Query: 368 QGQRTFEGQRTFEDSKKHSFLEELKSSNAQKFELSDIA 405
+G++ F G+ T +K+ F + S +++ F +A
Sbjct: 4 KGKKQFTGKSTKTAQEKNRFHKNSDSGSSKTFPTRKVA 41
>UNIPROTKB|G4MRT4 [details] [associations]
symbol:MGG_13803 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001313 InterPro:IPR012959 InterPro:IPR016024
Pfam:PF08144 PROSITE:PS50303 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 EMBL:CM001231 KO:K14844
RefSeq:XP_003710911.1 ProteinModelPortal:G4MRT4
EnsemblFungi:MGG_13803T0 GeneID:5049020 KEGG:mgr:MGG_13803
Uniprot:G4MRT4
Length = 724
Score = 137 (53.3 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 65/308 (21%), Positives = 132/308 (42%)
Query: 390 ELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLM- 448
+LKS + K + + ++ + + G + H ++ K P A +L
Sbjct: 77 DLKSEDDHKHKKAKLSSGTSDGKTFERGQT---SRESHALQKQLAQERKAAKPLADELAR 133
Query: 449 TDVFGNYVIQKFFEHGSPDQRKELAEKL----VGQVLPLSLQMYGCRVIQKALEVIELHQ 504
T + +K H ++R+ L ++L G+V L+ R +Q A++ + Q
Sbjct: 134 TKKLWERLRRK--SHVPKEERQGLVDELFTIVTGRVRDFVLKHDAVRAVQTAIKYATMAQ 191
Query: 505 KSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRV 564
+ ++ EL G + + +I K + E + I+ F G+V L HP +
Sbjct: 192 RREIAQELKGTFAQLAESRYAKFLIGKLLGHQDDEVRDLIVPEFYGKVKKLINHPEASWI 251
Query: 565 IQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHV--LERGKSYERTQILSKLA 622
+ + + ++Q ++ E + FAL + + G VT + + + + +R IL L
Sbjct: 252 LDDIYRGVATKEQKDILLREWYGTEFALFKPENGEAVTADLPKILKNEPSKRGPILKYLF 311
Query: 623 GKIVQMSQHKYASNVV--EKCLEY-----GDTAERELLIEEILGQSEENDNLLYYKS-RL 674
G I + Q + + + L+Y DT E + +E I ++++N +LL +
Sbjct: 312 GMINNLIQKQMTGFTMLHDAMLQYFLCLPPDTEEHKEFVEII--KADDNGDLLKNLAFTR 369
Query: 675 AGSMLICL 682
+G+ L+CL
Sbjct: 370 SGARLVCL 377
>ASPGD|ASPL0000058629 [details] [associations]
symbol:AN10173 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR001313 InterPro:IPR012959 InterPro:IPR016024
Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BN001308
GO:GO:0003723 OMA:FAELVHT EnsemblFungi:CADANIAT00001389
Uniprot:C8VSQ6
Length = 709
Score = 136 (52.9 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 60/227 (26%), Positives = 102/227 (44%)
Query: 471 ELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQ 530
EL + + G+V + RVIQ AL+ + Q+ Q+ EL G + + + +I
Sbjct: 187 ELFDIITGRVKDFVFKHDSVRVIQTALKYANVEQRKQIAHELKGSYVELAQSKYAKFLIG 246
Query: 531 KCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAF 590
K I +E + II+ F G+V L HP G ++ + + ++Q ++ E + F
Sbjct: 247 KLIVHGDSEIRDLIIAEFYGKVKRLIRHPEGSWILDDIYRTVATQEQQANLLREWYGAEF 306
Query: 591 AL-----AQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVV--EKCLE 643
A+ +D+ +LE + +R+ I+ L I Q+ Q K + + L+
Sbjct: 307 AIFRDNNTKDKKPTADLSKILEEDPA-KRSPIMHFLLELINQLIQKKTTGFTMLHDAMLQ 365
Query: 644 Y-----GDTAERELLIEEILGQSEEND---NLLYYKSRLAGSMLICL 682
Y T++ IE I G EE D NL + KS G+ L+CL
Sbjct: 366 YFLNVKPGTSDATEFIELIKGD-EEGDLVKNLAFTKS---GAHLMCL 408
>SGD|S000002904 [details] [associations]
symbol:PUF6 "Pumilio-homology domain protein that binds the
3' UTR of ASH1 mRNA" species:4932 "Saccharomyces cerevisiae"
[GO:0005934 "cellular bud tip" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0015934 "large ribosomal subunit"
evidence=IDA] [GO:0042273 "ribosomal large subunit biogenesis"
evidence=IMP] [GO:0006810 "transport" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0000900 "translation repressor activity, nucleic
acid binding" evidence=IDA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IDA] InterPro:IPR001313 InterPro:IPR012959
InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SGD:S000002904 SUPFAM:SSF48371 GO:GO:0005730
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0005934 GO:GO:0006810
EMBL:BK006938 EMBL:U33057 GO:GO:0003730 GO:GO:0042273 GO:GO:0000900
GO:GO:0015934 eggNOG:NOG273657 KO:K14844
GeneTree:ENSGT00390000015757 HOGENOM:HOG000246618 OMA:FAELVHT
OrthoDB:EOG41ZJKF PIR:S69554 RefSeq:NP_010784.1
ProteinModelPortal:Q04373 SMR:Q04373 DIP:DIP-6579N IntAct:Q04373
MINT:MINT-637951 STRING:Q04373 PaxDb:Q04373 PeptideAtlas:Q04373
EnsemblFungi:YDR496C GeneID:852107 KEGG:sce:YDR496C CYGD:YDR496c
NextBio:970463 Genevestigator:Q04373 GermOnline:YDR496C
Uniprot:Q04373
Length = 656
Score = 135 (52.6 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 56/253 (22%), Positives = 110/253 (43%)
Query: 392 KSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDV 451
K SN + +ELS I + + SR +Q +++ S + + + + L T
Sbjct: 148 KLSN-EIWELSKDC--ISDLVLKHDASRIVQTLVKYSSKDRREQIVDALKGKFYVLATSA 204
Query: 452 FGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELH-QKSQLVL 510
+G Y++ K +GS R+ + +L G + L G V++ + H Q+ Q++
Sbjct: 205 YGKYLLVKLLHYGSRSSRQTIINELHGSLRKLMRHREGAYVVEDLFVLYATHEQRQQMIK 264
Query: 511 ELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQV-ATLSTHPYGCRVIQRVL 569
E G R+ + + I+K E EK I G + A++ G +++ +
Sbjct: 265 EFWGSEYAVFRETHKDLTIEKVCES-SIEKRNIIARNLIGTITASVEKGSTGFQILHAAM 323
Query: 570 EH---CSDEQQGQCIVDEILESAFA-LAQDQYGNYVTQHVLERGKSYERTQILSKLAGKI 625
++E++ ++ E+L FA L G+ V ++ R + ER IL L
Sbjct: 324 REYVKIANEKEISEMI-ELLHEQFAELVHTPEGSDVACTLVARANAKERKLILKALKNHA 382
Query: 626 VQMSQHKYASNVV 638
++ +++Y N+V
Sbjct: 383 EKLIKNEYG-NIV 394
>CGD|CAL0005913 [details] [associations]
symbol:orf19.3547 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0015934 "large ribosomal subunit"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0042273 "ribosomal large subunit biogenesis"
evidence=IEA] [GO:0000900 "translation repressor activity, nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR012959
InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 CGD:CAL0005913 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 EMBL:AACQ01000094
EMBL:AACQ01000093 eggNOG:NOG273657 KO:K14844 HOGENOM:HOG000246618
RefSeq:XP_714906.1 RefSeq:XP_714969.1 ProteinModelPortal:Q59ZH2
STRING:Q59ZH2 GeneID:3643365 GeneID:3643461 KEGG:cal:CaO19.11031
KEGG:cal:CaO19.3547 Uniprot:Q59ZH2
Length = 667
Score = 128 (50.1 bits), Expect = 0.00014, P = 0.00014
Identities = 55/252 (21%), Positives = 112/252 (44%)
Query: 400 ELSDIAGRIVEFSVDQH-GSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQ 458
E+ +++ ++ V +H SR +Q +++ S E + + + +L T +G Y++
Sbjct: 157 EVWELSHDVINDLVMKHDASRVVQTLVKYSSKERRDIIVNSLKGSFYQLATSAYGKYLLI 216
Query: 459 KFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIEL-HQKSQLVLELDGHVM 517
K +GS + R + ++L G++ L G V++ + Q+ Q++ E G
Sbjct: 217 KLLHYGSKESRAIIVDELHGKLRKLMRHKEGAYVVEDLYVLYSTSEQRQQMIREFWGSQY 276
Query: 518 RCVRDQN-GNHVIQKCIECVPAEKIEFIISAFRGQV-ATLSTHPYGCRVIQRVLEH---- 571
RD G V+ E AEK + I+S G + A++ G +++ ++
Sbjct: 277 AVFRDSGKGKTVLDITRES--AEKKQLIMSNLYGTIKASVEKGSTGFQILHAAMKEYVTV 334
Query: 572 CSDE--QQGQCIVD--EILESAFA-LAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIV 626
D+ I D ++L FA L Q G+ V +++ + ER I+ L
Sbjct: 335 LKDDIDANDSAIRDFIDLLGEQFAELVHTQEGSDVACNLIALANAKERKVIIRGLKTHTN 394
Query: 627 QMSQHKYASNVV 638
++ +++Y N+V
Sbjct: 395 ELIKNEYG-NIV 405
Score = 121 (47.7 bits), Expect = 0.00079, P = 0.00079
Identities = 30/98 (30%), Positives = 54/98 (55%)
Query: 563 RVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLA 622
RV+Q ++++ S E++ IV+ + S + LA YG Y+ +L G R I+ +L
Sbjct: 177 RVVQTLVKYSSKERR-DIIVNSLKGSFYQLATSAYGKYLLIKLLHYGSKESRAIIVDELH 235
Query: 623 GKIVQMSQHKYASNVVEKC-LEYGDTAERELLIEEILG 659
GK+ ++ +HK + VVE + Y + +R+ +I E G
Sbjct: 236 GKLRKLMRHKEGAYVVEDLYVLYSTSEQRQQMIREFWG 273
>TAIR|locus:2086760 [details] [associations]
symbol:PUM24 "pumilio 24" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005829 "cytosol" evidence=RCA] [GO:0001510 "RNA methylation"
evidence=RCA] [GO:0006406 "mRNA export from nucleus" evidence=RCA]
[GO:0006606 "protein import into nucleus" evidence=RCA]
InterPro:IPR001313 InterPro:IPR016024 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006417 SUPFAM:SSF48371
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB028608 eggNOG:NOG273657 KO:K14844 EMBL:AY045638
IPI:IPI00521400 RefSeq:NP_566559.1 UniGene:At.5720
ProteinModelPortal:Q9LRZ3 SMR:Q9LRZ3 STRING:Q9LRZ3 PaxDb:Q9LRZ3
PRIDE:Q9LRZ3 EnsemblPlants:AT3G16810.1 GeneID:820934
KEGG:ath:AT3G16810 TAIR:At3g16810 HOGENOM:HOG000070534
InParanoid:Q9LRZ3 OMA:IKHGSAK PhylomeDB:Q9LRZ3
ProtClustDB:CLSN2688458 Genevestigator:Q9LRZ3 Uniprot:Q9LRZ3
Length = 641
Score = 131 (51.2 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 32/107 (29%), Positives = 52/107 (48%)
Query: 406 GRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGS 465
G++ E +V SR +Q ++ CS EK +F E+ P L ++ + + IQK + S
Sbjct: 121 GKVPEIAVSHVSSRVLQTCVKFCSQAEKDVLFTELQPQFLNLASNKYAVHFIQKMLDGAS 180
Query: 466 PDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL 512
Q L G V PL ++G V++ A + QK +L+ EL
Sbjct: 181 KQQLAACISSLRGHVAPLLRHVFGSLVVEHAYHLGSAAQKQELLAEL 227
Score = 126 (49.4 bits), Expect = 0.00022, P = 0.00022
Identities = 64/277 (23%), Positives = 119/277 (42%)
Query: 414 DQHGSRFIQQKLEHCSAEEKVSVFKEVL-PHASKLMTDVFGNYVIQKFFEHGSPDQRKEL 472
D+ S + +K A+E K+ PH + L ++ + + G D+ K +
Sbjct: 54 DKEQSTNLSKKERRVQAKELTEARKKKRKPHYN-LEQELVSLWEKMRRRNIGKEDRSKLI 112
Query: 473 AE---KLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVI 529
+E K+ G+V +++ RV+Q ++ +K L EL + ++ H I
Sbjct: 113 SEAIRKMKGKVPEIAVSHVSSRVLQTCVKFCSQAEKDVLFTELQPQFLNLASNKYAVHFI 172
Query: 530 QKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESA 589
QK ++ +++ IS+ RG VA L H +G V++ H Q Q E+L
Sbjct: 173 QKMLDGASKQQLAACISSLRGHVAPLLRHVFGSLVVEHAY-HLGSAAQKQ----ELLAEL 227
Query: 590 FALAQDQYGNYVTQHVLERGKSYERT--QILSKLAGKIVQMSQHKYASNVVEKCLEYG-- 645
++ + T S E+T I++KL + +++H A +++ LE G
Sbjct: 228 YSTELQLFKGLTT--------SNEKTVVDIIAKLGLQKGAVNRHMTA--IIQPILEKGIV 277
Query: 646 -DTAERELLIEEI-LGQSEENDNLLYYKSRLAGSMLI 680
T +LLIE + + ++L L GS+L+
Sbjct: 278 DHTITHKLLIEYLTIADKTSAADVLQL---LTGSLLL 311
Score = 39 (18.8 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 581 IVDEILESAFALAQDQYGNYVTQHV 605
++D +E+A Q ++GN V V
Sbjct: 492 LIDVCVENAEEFLQSKFGNEVMYEV 516
Score = 39 (18.8 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 23/99 (23%), Positives = 40/99 (40%)
Query: 572 CSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLER---GKSYER--------TQILSK 620
C + C + E + S A + Q ++H+LE ++ R IL K
Sbjct: 526 CPSLSEKLCELYEAISSVAAEPKPQESEKDSEHILENFHSSRTIRRLVLNRPGFASILFK 585
Query: 621 --LAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 657
L+GK +Q + S ++ +E D RE+ E+
Sbjct: 586 KALSGKCRSWAQG-HCSKILSAFVETEDVQVREMAKTEL 623
>RGD|1564753 [details] [associations]
symbol:LOC499339 "hypothetical protein LOC499339" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR001313
InterPro:IPR012959 InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 RGD:1564753 SUPFAM:SSF48371
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
eggNOG:NOG273657 HOVERGEN:HBG052166 KO:K14844 OMA:RKDCDKE
OrthoDB:EOG4X3H13 GeneTree:ENSGT00390000015757 HOGENOM:HOG000237322
EMBL:BC092579 EMBL:BC098744 IPI:IPI00563669 RefSeq:NP_001020207.1
UniGene:Rn.127943 UniGene:Rn.52964 ProteinModelPortal:Q562C7
STRING:Q562C7 PhosphoSite:Q562C7 PRIDE:Q562C7
Ensembl:ENSRNOT00000033724 GeneID:499339 KEGG:rno:499339
InParanoid:Q562C7 NextBio:702600 Genevestigator:Q562C7
GermOnline:ENSRNOG00000012574 Uniprot:Q562C7
Length = 647
Score = 126 (49.4 bits), Expect = 0.00022, P = 0.00022
Identities = 67/307 (21%), Positives = 135/307 (43%)
Query: 379 FEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFK 438
++D KK +ELK Q +LSD V +H +++K C E++V +
Sbjct: 109 WDDFKKKK--KELK----QNRQLSDKTNYDVVVRA-KHIWESLRRK--DCDKEKRVKLMS 159
Query: 439 EVLPHAS-KLMTDVFGN---YVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQ 494
++ K+ T F + VIQ ++GS +QRK E+L G ++ LS Y +++
Sbjct: 160 DLQKLIQGKIKTIAFAHDSTRVIQCLIQYGSEEQRKWAFEELQGDLVELSKAKYSRNIVK 219
Query: 495 KALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCI-ECVPAEKIEFIISAFRGQVA 553
K L Q ++++ GHV + +R + +++ + E+ + G
Sbjct: 220 KFLMYGSKPQIAEIIRSFKGHVRKMLRHSEASAIVEYAYNDKAILEQRNMLTEELYGNTF 279
Query: 554 TL---STHPYGCRVIQRVLEHCSDEQQG--QCIVDEILESAFALAQDQ--YGNYVTQHVL 606
L + HP +++VLE Q G + I+DE+ + +AQ + + + V
Sbjct: 280 QLYKSADHP----TLEKVLE----VQPGKLELILDEMKQILTPMAQKEAVIKHSLVHKVF 331
Query: 607 ERGKSYE----RTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE 662
+Y R++++ + +V ++ + V CL +G +R+++++ + E
Sbjct: 332 LDFFTYAPPKLRSELIEAIREAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVE 391
Query: 663 ENDNLLY 669
+ N Y
Sbjct: 392 KIANGQY 398
>UNIPROTKB|E1C1R5 [details] [associations]
symbol:KIAA0020 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] InterPro:IPR001313 InterPro:IPR012959
InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 GO:GO:0005783 SUPFAM:SSF48371 GO:GO:0005730
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 OMA:RKDCDKE
GeneTree:ENSGT00390000015757 EMBL:AADN02068459 EMBL:AADN02068460
EMBL:AADN02068461 IPI:IPI00574038 Ensembl:ENSGALT00000016546
ArrayExpress:E1C1R5 Uniprot:E1C1R5
Length = 638
Score = 125 (49.1 bits), Expect = 0.00028, P = 0.00028
Identities = 57/289 (19%), Positives = 127/289 (43%)
Query: 381 DSKKHSF--LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFK 438
DSKK + ++ K Q +L+D + + Q ++K C E++ +
Sbjct: 96 DSKKPKWDDFKKKKKELKQSRQLNDRSNYDIIVKSKQIWESVRRKK---CDKEKREKLMN 152
Query: 439 EV--LPHASKLMTDVFGN---YVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVI 493
E+ L H K+ F + VIQ F ++G+ QR+E E+L ++ LS Y ++
Sbjct: 153 ELQKLLHG-KIKNLAFAHDSTRVIQCFIQYGNDKQRQETFEELKDSLVELSKSKYSRNIV 211
Query: 494 QKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCI-ECVPAEKIEFIISAFRGQV 552
+K L Q ++++ GHV + +R + V++ + E+ + G
Sbjct: 212 KKFLMYGTKQQIAEIIKSFKGHVKKMLRHAEASAVVEYAYNDKAILEQRNMLTEELYGNT 271
Query: 553 ATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQY---GNYVTQHVLE-- 607
+ P + +VLE + ++ + I+DE+ + +AQ + + V + L+
Sbjct: 272 FQVYKTPI-VPTLDKVLE--AQPEKREAILDEMKQILTPMAQKEAVIKHSLVHKVFLDFF 328
Query: 608 -RGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIE 655
+R++++ + ++ ++ + V CL +G +R+++++
Sbjct: 329 THALPKQRSEMIEAIREAVIYLAHTHDGARVAMHCLWHGTPKDRKVIVK 377
>MGI|MGI:106253 [details] [associations]
symbol:D19Bwg1357e "DNA segment, Chr 19, Brigham & Women's
Genetics 1357 expressed" species:10090 "Mus musculus" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001313
InterPro:IPR012959 InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 MGI:MGI:106253 GO:GO:0005783
SUPFAM:SSF48371 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 eggNOG:NOG273657 HOVERGEN:HBG052166 KO:K14844
OMA:RKDCDKE OrthoDB:EOG4X3H13 EMBL:AK050829 EMBL:AK088081
EMBL:AK141893 EMBL:AK172872 IPI:IPI00222675 RefSeq:NP_803425.1
UniGene:Mm.261027 ProteinModelPortal:Q8BKS9 STRING:Q8BKS9
PhosphoSite:Q8BKS9 PaxDb:Q8BKS9 PRIDE:Q8BKS9
Ensembl:ENSMUST00000076219 GeneID:52874 KEGG:mmu:52874
UCSC:uc008hby.1 CTD:52874 GeneTree:ENSGT00390000015757
HOGENOM:HOG000237322 InParanoid:Q8BKS9 NextBio:309667 Bgee:Q8BKS9
Genevestigator:Q8BKS9 GermOnline:ENSMUSG00000041360 Uniprot:Q8BKS9
Length = 647
Score = 131 (51.2 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 63/305 (20%), Positives = 135/305 (44%)
Query: 379 FEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFK 438
++D KK +ELK S +LSD + +H +++K C E++V +
Sbjct: 109 WDDFKKKK--KELKQSR----QLSDKTNYDIVVRA-KHIWESLRRK--DCDKEKRVKLMS 159
Query: 439 EVLPHAS-KLMTDVFGN---YVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQ 494
++ K+ T F + VIQ F ++G+ +QRK+ ++L G ++ LS Y +++
Sbjct: 160 DLQKLIQGKIKTIAFAHDSTRVIQCFIQYGNEEQRKQAFQELQGDLVELSKAKYSRNIVK 219
Query: 495 KALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCI-ECVPAEKIEFIISAFRGQVA 553
K L Q ++++ GHV + +R + +++ + E+ + G
Sbjct: 220 KFLMYGSKPQVAEIIRSFKGHVRKMLRHSEASAIVEYAYNDKAILEQRNMLTEELYGNTF 279
Query: 554 TL---STHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQ--YGNYVTQHVLER 608
L + HP + +VLE + + I+DE+ + +AQ + + + V
Sbjct: 280 QLYKSADHP----TLDKVLE--LQPAKLELIMDEMKQILTPMAQKEAVIKHSLVHKVFLD 333
Query: 609 GKSYE----RTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEEN 664
+Y R++++ + +V ++ + V CL +G +R+++++ + E+
Sbjct: 334 FFTYAPPKPRSELIEAIREAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEKV 393
Query: 665 DNLLY 669
N Y
Sbjct: 394 ANGQY 398
Score = 38 (18.4 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 368 QGQRTFEGQRTFEDSKKHSFLEELKSSNAQKF 399
+G++ F G+ K+ F + +SS+++ F
Sbjct: 4 KGKKKFTGKSPQTSQGKNKFHKNSESSSSKTF 35
>TAIR|locus:2144711 [details] [associations]
symbol:PUM21 "pumilio 21" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
PROSITE:PS50302 PROSITE:PS50303 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:AB020752
EMBL:AL353994 eggNOG:COG5099 IPI:IPI00537619 PIR:T49937
RefSeq:NP_196523.1 UniGene:At.54788 ProteinModelPortal:Q9LXC5
SMR:Q9LXC5 EnsemblPlants:AT5G09610.1 GeneID:830820
KEGG:ath:AT5G09610 TAIR:At5g09610 HOGENOM:HOG000153154
InParanoid:Q9LXC5 OMA:HQEPGES PhylomeDB:Q9LXC5
ProtClustDB:CLSN2916885 Genevestigator:Q9LXC5 Uniprot:Q9LXC5
Length = 517
Score = 126 (49.4 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 48/186 (25%), Positives = 80/186 (43%)
Query: 481 LPLSLQMYGCRVIQKALEVIELHQKSQ---LVLELDGHVMRCVRDQNGNHVIQKCIECVP 537
L L+ YG +AL ++ S L +D + + D+ G +I I V
Sbjct: 264 LHLATNQYG----SQALRILFRRSPSLDHLLFCAVDTNFFLLMSDKYGRGLIIPAIRAVD 319
Query: 538 AEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQY 597
K E + L+ GC + VL+ + I + + +A L+ D Y
Sbjct: 320 KTKKESLYKLTYEYTLHLARLETGCLALNNVLQEIRGIYR-DLIFECVANNADWLSFDPY 378
Query: 598 GNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEI 657
G +V Q++L T I +L G +++ + S VVEKCL+ D A R+ ++EE
Sbjct: 379 GTHVVQNILILQNPVATTAIAERLRGSFFRLAMERQGSYVVEKCLK-SDFA-RDQVLEEF 436
Query: 658 LGQSEE 663
G ++E
Sbjct: 437 RGNAKE 442
Score = 40 (19.1 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 157 YPSQ--YNVGGYALNSALFPPFVAGYPSQGPVPMPFDATS 194
YP+ YNVG + S PPF PS + P D++S
Sbjct: 154 YPNLNVYNVGHISAASFNAPPFT---PSS--LTQPDDSSS 188
>UNIPROTKB|F1SJG9 [details] [associations]
symbol:LOC100152831 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR012959 InterPro:IPR016024
Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
OMA:RKDCDKE GeneTree:ENSGT00390000015757 EMBL:CU062572
Ensembl:ENSSSCT00000005761 Uniprot:F1SJG9
Length = 647
Score = 130 (50.8 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 61/302 (20%), Positives = 135/302 (44%)
Query: 379 FEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFK 438
+++ KK +ELK S +LSD A + Q +++K C+ E++V +
Sbjct: 109 WDEFKKKK--KELKQSR----QLSDKANYDIVVRAKQIWE-ILRRK--DCNKEKRVKLMS 159
Query: 439 EVLPHAS-KLMTDVFGN---YVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQ 494
++ K+ T F + VIQ + ++G+ +QRK+ E+L G ++ LS Y +++
Sbjct: 160 DLQKLIQGKIKTIAFAHDSTRVIQCYIQYGTEEQRKQAFEELRGDLVELSKAKYSRNIVK 219
Query: 495 KALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCI-ECVPAEKIEFIISAFRGQVA 553
K L Q ++++ GHV + +R + +++ + E+ + G
Sbjct: 220 KFLMYGNKAQIAEIMRSFKGHVRKMLRHAEASAIVEYAYNDKAILEQRNMLTEELYGNTF 279
Query: 554 TLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQY---GNYVTQHVLE--- 607
L C + +VLE ++ + I+DE+ + +AQ + + V + L+
Sbjct: 280 QLYKSA-DCPTLDKVLE--VQPEKLELIMDEMKQILTPMAQKEAVIKHSLVHKVFLDFFT 336
Query: 608 RGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNL 667
R++++ + ++ ++ + V CL +G +R+++++ + E+ N
Sbjct: 337 HAPPKLRSEMIEAIREAVIYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEKVANG 396
Query: 668 LY 669
Y
Sbjct: 397 QY 398
Score = 37 (18.1 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 368 QGQRTFEGQRTFEDSKKHSFLEELKSSNAQKF 399
+G++ F G+ T +K+ F + S +++ F
Sbjct: 4 KGKKKFTGKGTKTSQEKNRFHKNNGSGSSKTF 35
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.132 0.385 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 688 639 0.00093 120 3 11 22 0.43 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 98
No. of states in DFA: 617 (66 KB)
Total size of DFA: 337 KB (2169 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 57.76u 0.20s 57.96t Elapsed: 00:00:03
Total cpu time: 57.80u 0.20s 58.00t Elapsed: 00:00:03
Start: Tue May 21 13:23:19 2013 End: Tue May 21 13:23:22 2013