Query 005600
Match_columns 688
No_of_seqs 269 out of 1561
Neff 5.6
Searched_HMMs 29240
Date Tue Mar 26 19:16:32 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005600.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2102-2106//hhsearch_pdb/005600hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gvo_A Pumilio 2, pumilio homo 1.0 1 1 479.8 21.3 304 383-687 3-308 (351)
2 3k49_A MRNA-binding protein PU 1.0 1 1 478.9 19.8 305 382-687 2-325 (369)
3 3k62_A FEM-3 mRNA-binding fact 1.0 1 1 462.9 23.3 305 363-687 4-348 (412)
4 3v71_A PUF (pumilio/FBF) domai 1.0 1 1 445.7 22.0 291 397-687 9-328 (382)
5 3bwt_A Protein PUF4; pumilio, 1.0 1 1 433.5 19.0 287 397-687 4-296 (333)
6 3gvo_A Pumilio 2, pumilio homo 1.0 1 1 378.2 19.5 297 379-682 32-339 (351)
7 3k62_A FEM-3 mRNA-binding fact 1.0 1 1 349.7 22.5 265 379-644 75-402 (412)
8 3v71_A PUF (pumilio/FBF) domai 1.0 1 1 343.2 21.4 266 379-645 66-382 (382)
9 3k49_A MRNA-binding protein PU 1.0 1 1 336.0 17.0 298 379-682 37-357 (369)
10 3bwt_A Protein PUF4; pumilio, 1.0 1 1 320.4 24.3 296 379-682 19-331 (333)
No 1
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=1.00 E-value=1 Score=479.83 Aligned_cols=304 Identities=55% Similarity=0.910 Sum_probs=292.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 44489998312101240599999999997219994899999731199999999999997737754338575548878720
Q 005600 383 KKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFE 462 (688)
Q Consensus 383 ~~s~LLeel~s~~~r~~~L~~I~G~I~eLa~dq~GSRVIQklLe~~s~Eer~~If~EI~~~i~eLmtD~fGn~VIQKLLe 462 (688)
-|+.++|+|+.++.+.++|+++.|+++++++||+|||+||++|+.+++++++.||+|+.+++.+||+|+||||||||+|+
T Consensus 3 ~~~~l~e~~r~~~~~~~~l~~~~g~i~~la~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle 82 (351)
T 3gvo_A 3 GRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFE 82 (351)
T ss_dssp CCCHHHHHHHTTCCTTCCGGGGTTCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHH
T ss_pred CCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_conf 84278999757898996899987499999269863699999971398999999999998858989718166299999996
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHCHHHHHCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 28999999999999850975540565239999998641889999999962001515421657752466865028945799
Q 005600 463 HGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIE 542 (688)
Q Consensus 463 ~gs~eq~~~Ii~~L~g~i~~Ls~h~yGSrVIQklLe~a~~eqk~~Li~EL~g~i~~L~kdq~GnhVIQklLe~~~~e~~~ 542 (688)
+++++++..|++.+.+++.+|+.|+|||||||++|+.++.+++..|+.||.+++..|++|++||||+|+++++.+++.+.
T Consensus 83 ~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~ 162 (351)
T 3gvo_A 83 FGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQ 162 (351)
T ss_dssp HCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTH
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 09999999999998766998860788689999999967899999999985316999987101327999999768999999
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999886597740598731899999851597788999999999999999709784699999985099378999999999
Q 005600 543 FIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLA 622 (688)
Q Consensus 543 ~II~~L~~~l~~Ls~hk~GS~VIQkiLe~~~~~~~r~~II~eIle~l~~La~DqyGNyVIQ~iLe~~~~keRk~IIk~Lk 622 (688)
+|++.+.+++.+|++|++||+|+|++|+++. ++.+..|++++..++..|++|+|||||||++|++++++.++.|++.++
T Consensus 163 ~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~-~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~ 241 (351)
T 3gvo_A 163 FIIDAFKGQVFVLSTHPYGCRVIQRILEHCT-AEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIR 241 (351)
T ss_dssp HHHHHTTTTHHHHHTSTTHHHHHHHHHHHSC-HHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 9999998889999807574899999999789-999999999986549961899438799999999675344999999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC-CHHHHC-CCCCHHHHHHHHHCCCC
Q ss_conf 999987049644999999998299999999999993498786-402230-28132699999411247
Q 005600 623 GKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEEN-DNLLYY-KSRLAGSMLICLTSWTE 687 (688)
Q Consensus 623 g~l~eLs~~K~GS~VVEklL~~~~~~~Rk~Ii~ELlg~~~~~-~~L~~L-~DqyGnyVLq~LLsvte 687 (688)
+++.+|+++||||+|||+||++++++.|+.|++|++...++. +.|..| .|+|||||||++|+.++
T Consensus 242 ~~~~~Ls~~k~gs~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L~~~~ 308 (351)
T 3gvo_A 242 GKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAE 308 (351)
T ss_dssp TCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHHHHCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCC
T ss_conf 8899985493889999999975999999999999861267887279880699626799999998589
No 2
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=1.00 E-value=1 Score=478.86 Aligned_cols=305 Identities=46% Similarity=0.750 Sum_probs=290.7
Q ss_pred HHHHHHHHHHHCCCH-----HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 244489998312101-----240599999999997219994899999731199999999999997737754338575548
Q 005600 382 SKKHSFLEELKSSNA-----QKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYV 456 (688)
Q Consensus 382 ~~~s~LLeel~s~~~-----r~~~L~~I~G~I~eLa~dq~GSRVIQklLe~~s~Eer~~If~EI~~~i~eLmtD~fGn~V 456 (688)
-+|+.+||+|+++.. ++..|+++.|+++++++||+|||+||++|+.+++++++.||+|+.+++.+||+|+|||||
T Consensus 2 ~~~s~lle~~~~~~~~~~~~~~~~l~~i~g~i~~l~~d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~v 81 (369)
T 3k49_A 2 YHRSPLLEQLRNSSSDKNSNSNMSLKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYV 81 (369)
T ss_dssp ---CHHHHHHHTTCC------CCCGGGGTTCHHHHHTSHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHH
T ss_pred CCCCHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 87525489986799865544460399999899999728723099999866299999999999999989998648511558
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHCHHHHHCCCCCCHHHHHHHHCC
Q ss_conf 87872028999999999999850975540565239999998641889999999962001515421657752466865028
Q 005600 457 IQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECV 536 (688)
Q Consensus 457 IQKLLe~gs~eq~~~Ii~~L~g~i~~Ls~h~yGSrVIQklLe~a~~eqk~~Li~EL~g~i~~L~kdq~GnhVIQklLe~~ 536 (688)
|||+|++++++++..|++++.+++..|+.|+|||||||++|++++.+++..++.||.+++..|++|++||||+|++|+..
T Consensus 82 vQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~ 161 (369)
T 3k49_A 82 IQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETI 161 (369)
T ss_dssp HHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHS
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHC
T ss_conf 99999739999999999998620898851755489999999758999999999999999999951744554999999719
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHH---
Q ss_conf 94579999999886597740598731899999851597788999999999999999709784699999985099378---
Q 005600 537 PAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYE--- 613 (688)
Q Consensus 537 ~~e~~~~II~~L~~~l~~Ls~hk~GS~VIQkiLe~~~~~~~r~~II~eIle~l~~La~DqyGNyVIQ~iLe~~~~ke--- 613 (688)
+++.+.+|++.+.+++..|++|++||+|+|+||+++. ++.++.+++++..++..|++|+|||||||++|+.++++.
T Consensus 162 ~~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~~~-~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~~~~~~~ 240 (369)
T 3k49_A 162 PIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGS-SEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEM 240 (369)
T ss_dssp CGGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHHSC-HHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCTTSCHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHH
T ss_conf 9999999999999999999678766829999998689-999999999999999999659729999999995389032235
Q ss_pred ---HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCC-------CCCCHHHHC-CCCCHHHHHHHH
Q ss_conf ---999999999999987049644999999998299999999999993498-------786402230-281326999994
Q 005600 614 ---RTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQS-------EENDNLLYY-KSRLAGSMLICL 682 (688)
Q Consensus 614 ---Rk~IIk~Lkg~l~eLs~~K~GS~VVEklL~~~~~~~Rk~Ii~ELlg~~-------~~~~~L~~L-~DqyGnyVLq~L 682 (688)
++.|++.|.+++.+|+++||||+|||+||++++++.|+.|++++++.. +++++|..| .|+|||||||++
T Consensus 241 ~~~~~~i~~~l~~~~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~~l~~~~~~~~~~~~~~~~l~~L~~D~~gNyViq~~ 320 (369)
T 3k49_A 241 VDIKQEIIETVANNVVEYSKHKFASNVVEKSILYGSKNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANYVIQKL 320 (369)
T ss_dssp HHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHTTTSCSSHHHHHTCCTTSHHHHHHTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
T ss_conf 76799999999999999986157569999999839999999999998555643211235652799998473058999999
Q ss_pred HCCCC
Q ss_conf 11247
Q 005600 683 TSWTE 687 (688)
Q Consensus 683 Lsvte 687 (688)
|++++
T Consensus 321 l~~~~ 325 (369)
T 3k49_A 321 VNVSE 325 (369)
T ss_dssp HHHCC
T ss_pred HHHCC
T ss_conf 99678
No 3
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=1.00 E-value=1 Score=462.90 Aligned_cols=305 Identities=26% Similarity=0.492 Sum_probs=276.3
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHH--HHHHHHHHHCCCCCHHHHHHHHCC-CHHHHHHHHHH
Q ss_conf 999865455557775457524448999831210124059999--999999721999489999973119-99999999999
Q 005600 363 IYSGWQGQRTFEGQRTFEDSKKHSFLEELKSSNAQKFELSDI--AGRIVEFSVDQHGSRFIQQKLEHC-SAEEKVSVFKE 439 (688)
Q Consensus 363 ~~~~W~~~r~~~~~r~~~d~~~s~LLeel~s~~~r~~~L~~I--~G~I~eLa~dq~GSRVIQklLe~~-s~Eer~~If~E 439 (688)
.++.|...+.++. .+. +.|.++ +|+++++++||+|||+||++|+.+ ++++++.||+|
T Consensus 4 ~~~~w~~~~~~~~----~~~----------------~~L~~~~~~G~i~~la~Dq~GsR~lQ~~l~~~~~~e~~~~If~e 63 (412)
T 3k62_A 4 VLPTWSLDSNGEM----RSR----------------LSLSEVLDSGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQ 63 (412)
T ss_dssp -CCGGGBCTTSSB----CTT----------------CCHHHHHHHTCHHHHHTSHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred CCCCCHHCCCCCC----CCC----------------CCHHHHHHCCCCHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 6864233026999----987----------------84999974877199964975689999986508998999999999
Q ss_pred HHHH---HHHHHCCCCCCHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHH
Q ss_conf 9773---77543385755488787202899-------9999999999850975540565239999998641889999999
Q 005600 440 VLPH---ASKLMTDVFGNYVIQKFFEHGSP-------DQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLV 509 (688)
Q Consensus 440 I~~~---i~eLmtD~fGn~VIQKLLe~gs~-------eq~~~Ii~~L~g~i~~Ls~h~yGSrVIQklLe~a~~eqk~~Li 509 (688)
+.++ +.+||+|+||||||||+|+++++ +++..|++.+.+++.+|+.|++||||||++|+.++.+++..|+
T Consensus 64 l~~~~~~~~~L~~d~fGNyvvQKlle~~~~~~~~~~~~q~~~i~~~l~g~v~~L~~~~~GsrvvQk~le~~~~~~~~~iv 143 (412)
T 3k62_A 64 VIGRKDDFLKLSTNIFGNYLVQSVIGISLATNDDGYTKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLV 143 (412)
T ss_dssp HSSSHHHHHHHHTSTTHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTHHHHHHSTTHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 97225679999837298899999998489112324399999999999999999981745249999999957888999999
Q ss_pred HHH--HHCHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HHHHHHHCCCCCHHHHHHHHHHCCCH----------
Q ss_conf 962--0015154216577524668650289457999999988--65977405987318999998515977----------
Q 005600 510 LEL--DGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFR--GQVATLSTHPYGCRVIQRVLEHCSDE---------- 575 (688)
Q Consensus 510 ~EL--~g~i~~L~kdq~GnhVIQklLe~~~~e~~~~II~~L~--~~l~~Ls~hk~GS~VIQkiLe~~~~~---------- 575 (688)
.|| .+++..|++|++||||+|+||+..+++.+.+|++.+. +++.+|++|++||+|+|+||++|.+.
T Consensus 144 ~eL~~~~~i~~L~~D~~GNhVIQK~Le~~~~~~~~~I~~~~~~~~~~~~la~h~~GcrVvQk~le~~~~~~~~~~~~~~~ 223 (412)
T 3k62_A 144 QALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAA 223 (412)
T ss_dssp HTSCCSHHHHHHHHCTTTHHHHHHHHHHSCHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTSCSGGGTTSCHHH
T ss_pred HHHHCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 99704601899971964369999999969999999999987141369998559635999999999667411220010003
Q ss_pred -HHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHH-HHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHHCCHH
Q ss_conf -8899----999999999999970978469999998509937-8999999-99999998704964499999999829999
Q 005600 576 -QQGQ----CIVDEILESAFALAQDQYGNYVTQHVLERGKSY-ERTQILS-KLAGKIVQMSQHKYASNVVEKCLEYGDTA 648 (688)
Q Consensus 576 -~~r~----~II~eIle~l~~La~DqyGNyVIQ~iLe~~~~k-eRk~IIk-~Lkg~l~eLs~~K~GS~VVEklL~~~~~~ 648 (688)
+++. .++++|..++..|++|+|||||||++|+++.+. .|..|++ .|++++.+||++||||+||||||++++++
T Consensus 224 ~~qr~~il~~L~~~I~~~~~~L~~dq~GNyViQ~iL~~g~~~~~r~~ii~~~l~~~~~~LS~~KfgSnVVek~L~~~~~~ 303 (412)
T 3k62_A 224 QNLRERALQRLMTSVTNRCQELATNEYANYIIQHIVSNDDLAVYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHAPLE 303 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHSTTTHHHHHHHHHCGGGHHHHHHHHHHHTTTCHHHHHTSTTHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHH
T ss_conf 88999999999999999999986484202999999962990557999999999988999960407689999999859999
Q ss_pred HHHHHHHHHHCC-----CCCCCHHHHC-CCCCHHHHHHHHHCCCC
Q ss_conf 999999999349-----8786402230-28132699999411247
Q 005600 649 ERELLIEEILGQ-----SEENDNLLYY-KSRLAGSMLICLTSWTE 687 (688)
Q Consensus 649 ~Rk~Ii~ELlg~-----~~~~~~L~~L-~DqyGnyVLq~LLsvte 687 (688)
.|+.|++|++.. ..+++.|..| +|+|||||||++|++++
T Consensus 304 ~r~~ii~ei~~~~~~~~~~~~~~l~~L~~DqyGNYViQ~~L~~~~ 348 (412)
T 3k62_A 304 LLAEMMDEIFDGYIPHPDTGKDALDIMMFHQFGNYVVQCMLTICC 348 (412)
T ss_dssp HHHHHHHHHHHSSCCCTTTCCCHHHHHHHSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCC
T ss_conf 999999999850357765451699998669936899999999754
No 4
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=445.70 Aligned_cols=291 Identities=25% Similarity=0.462 Sum_probs=263.8
Q ss_pred HHHHHHHH--HHHHHHHHHCCCCCHHHHHHHHCCCHHH-HHHHHHHHH---HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 24059999--9999997219994899999731199999-999999997---73775433857554887872028999999
Q 005600 397 QKFELSDI--AGRIVEFSVDQHGSRFIQQKLEHCSAEE-KVSVFKEVL---PHASKLMTDVFGNYVIQKFFEHGSPDQRK 470 (688)
Q Consensus 397 r~~~L~~I--~G~I~eLa~dq~GSRVIQklLe~~s~Ee-r~~If~EI~---~~i~eLmtD~fGn~VIQKLLe~gs~eq~~ 470 (688)
....|.++ +|+++++++||+|||+||++|+.++.++ +..||+|+. +++.+||+|+||||||||+|++++++++.
T Consensus 9 ~~~~L~~~~~~G~i~~~a~Dq~Gsr~lQ~~l~~~~~~~~~~~if~~l~e~~~~~~~L~~d~~Gn~vvQklle~~~~~~~~ 88 (382)
T 3v71_A 9 IFISLEDVLLNGQLIDFAIDPSGVKFLEANYPLDSEDQIRKAVFEKFTESTTLFVGLCHSRNGNFIVQKLVELATPAEQR 88 (382)
T ss_dssp --CCHHHHHHTTCHHHHHHSHHHHHHHHHTSCSCTTCHHHHHHHHHHHSCHHHHHHHHSSTTHHHHHHHHHHTCCHHHHH
T ss_pred CCCCHHHHHHCCCEEHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHH
T ss_conf 31749988408877003048710299998704388689999999999862778999962828879999999859999999
Q ss_pred HHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHHHHH-CHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99999-985097554056523999999864188999999996200-1515421657752466865028945799999998
Q 005600 471 ELAEK-LVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDG-HVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAF 548 (688)
Q Consensus 471 ~Ii~~-L~g~i~~Ls~h~yGSrVIQklLe~a~~eqk~~Li~EL~g-~i~~L~kdq~GnhVIQklLe~~~~e~~~~II~~L 548 (688)
.|+.+ +.+++..|+.|+|||||+|++++.++.+++..|+.||.+ ++..|++|++||||||+||++.+++.+++|++.+
T Consensus 89 ~li~~~l~g~v~~Ls~~~~G~rvvQk~ie~~~~~~~~~li~eL~~~~~~~L~~D~~GnhVIQk~le~~~~~~~~~Ii~~~ 168 (382)
T 3v71_A 89 ELLRQMIDGGLLAMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMCTDQISIHVIQRVVKQLPVDMWTFFVHFL 168 (382)
T ss_dssp HHHHHHHHTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTSCHHHHHHSTTTHHHHHHHHTTSCTTTSHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99999731139887737505699999999789999999999854126699961856151999999978999999999999
Q ss_pred H--HHHHHHHCCCCCHHHHHHHHHHCCCHHH----------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCH--HHH
Q ss_conf 8--6597740598731899999851597788----------9999999999999997097846999999850993--789
Q 005600 549 R--GQVATLSTHPYGCRVIQRVLEHCSDEQQ----------GQCIVDEILESAFALAQDQYGNYVTQHVLERGKS--YER 614 (688)
Q Consensus 549 ~--~~l~~Ls~hk~GS~VIQkiLe~~~~~~~----------r~~II~eIle~l~~La~DqyGNyVIQ~iLe~~~~--keR 614 (688)
. +++.++++|++||+|+|+||+++.++.. ...++++|..++..|++|+|||||||++|+++.+ ..|
T Consensus 169 ~~~~~~~~la~h~~Gc~VlQ~~le~~~~~~k~~~~~~r~~~l~~l~~~I~~~~~~L~~d~~GNyVIQ~iL~~~~~~e~~r 248 (382)
T 3v71_A 169 SSGDSLMAVCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGIMEMYR 248 (382)
T ss_dssp HSTTHHHHHHHSTTHHHHHHHHHHHHTCCSSSTTHHHHHHHHHHHHHHHHTTHHHHHTSTTTHHHHHHHHTCCSTHHHHH
T ss_pred HCCCCHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHH
T ss_conf 54531176826951159999999968876421145578999999999999989998647520199999984499747889
Q ss_pred HHHHHH-HHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCC-----CCCCCHHHHC-CCCCHHHHHHHHHCCCC
Q ss_conf 999999-9999998704964499999999829999999999999349-----8786402230-28132699999411247
Q 005600 615 TQILSK-LAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQ-----SEENDNLLYY-KSRLAGSMLICLTSWTE 687 (688)
Q Consensus 615 k~IIk~-Lkg~l~eLs~~K~GS~VVEklL~~~~~~~Rk~Ii~ELlg~-----~~~~~~L~~L-~DqyGnyVLq~LLsvte 687 (688)
..|+.. |.+++.+|+++||||+|||+||++++++.|+.|++||+.. ..+++.|..| .|+|||||||++|++++
T Consensus 249 ~~ii~~~l~~~~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~~~~~l~~l~~D~ygNyVvQ~~L~~~~ 328 (382)
T 3v71_A 249 DTIIDKCLLRNLLSMSQDKYASHVIEGAFLFAPPALLHEMMEEIFSGYVKDVESNRDALDILLFHQYGNYVVQQMISICT 328 (382)
T ss_dssp HHHHHHTTTTCHHHHTTSTTHHHHHHHHHHHCCHHHHHHHHHHHCC--CCCSSSCCCHHHHHHTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHCC
T ss_conf 99999999998999965706759999999869999999999999821345555652589998779971399999999743
No 5
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=1.00 E-value=1 Score=433.47 Aligned_cols=287 Identities=31% Similarity=0.474 Sum_probs=265.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 24059999999999721999489999973119999999999999773775433857554887872028999999999999
Q 005600 397 QKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKL 476 (688)
Q Consensus 397 r~~~L~~I~G~I~eLa~dq~GSRVIQklLe~~s~Eer~~If~EI~~~i~eLmtD~fGn~VIQKLLe~gs~eq~~~Ii~~L 476 (688)
++..|++++|++++++.||+|||+||++|+.++++++..||+|+.+++.+||+|+||||||||+|++++++++..|++.+
T Consensus 4 ~~~~l~~~~g~i~~l~~~q~gsr~iQ~~l~~~~~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~ 83 (333)
T 3bwt_A 4 ADAVLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKIS 83 (333)
T ss_dssp TTCCGGGTTTCHHHHTSSHHHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 54869999979999965847139999987629999999999999988999955853279999999629999999999998
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHC-HHHHHHHHHHHHHCHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 8509755405652399999986418-899999999620015154216577524668650289457999999988659774
Q 005600 477 VGQVLPLSLQMYGCRVIQKALEVIE-LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATL 555 (688)
Q Consensus 477 ~g~i~~Ls~h~yGSrVIQklLe~a~-~eqk~~Li~EL~g~i~~L~kdq~GnhVIQklLe~~~~e~~~~II~~L~~~l~~L 555 (688)
.+++.+|+.|+|||||||++++++. .+++..+++||.+++..|++|++||||+|+||+..+++.+++|++.+.+++.+|
T Consensus 84 ~~~~~~l~~~~~G~rviQ~~l~~~~~~~~~~~i~~el~~~~~~L~~d~~gn~Viqk~l~~~~~~~~~~i~~~l~~~~~~l 163 (333)
T 3bwt_A 84 SPHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDI 163 (333)
T ss_dssp GGGHHHHHHSTTHHHHHHHHHHHCCSHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 74899998555552899988986381999999999999989999419762689999999779988999999999989999
Q ss_pred HCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHH----HHHHHHHHHHHHHHHHCC
Q ss_conf 0598731899999851597788999999999999999709784699999985099378----999999999999987049
Q 005600 556 STHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYE----RTQILSKLAGKIVQMSQH 631 (688)
Q Consensus 556 s~hk~GS~VIQkiLe~~~~~~~r~~II~eIle~l~~La~DqyGNyVIQ~iLe~~~~ke----Rk~IIk~Lkg~l~eLs~~ 631 (688)
++|++||+|+|+||+++. +++++.+++++.+++..|++|+|||||||++|+.++++. ++.|++.+++++.+|+++
T Consensus 164 ~~~~~Gs~Vvq~~l~~~~-~~~~~~l~~el~~~~~~L~~d~~GnyVvQ~~L~~~~~~~~~~~~~~ii~~l~~~~~~Ls~~ 242 (333)
T 3bwt_A 164 ATHRHGCCVLQRCLDHGT-TEQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIH 242 (333)
T ss_dssp HTSTTHHHHHHHHHHHCC-HHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHGGGHHHHHTS
T ss_pred HCCCHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 658361799999998299-9999999999999899980598289999999983872002036999999999999999706
Q ss_pred CCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHC-CCCCHHHHHHHHHCCCC
Q ss_conf 644999999998299999999999993498786402230-28132699999411247
Q 005600 632 KYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLYY-KSRLAGSMLICLTSWTE 687 (688)
Q Consensus 632 K~GS~VVEklL~~~~~~~Rk~Ii~ELlg~~~~~~~L~~L-~DqyGnyVLq~LLsvte 687 (688)
+|||+|+++||+.++ .++.++.+++... +.+.+..| .|+|||||||++|++++
T Consensus 243 k~gs~Vvek~l~~~~--~~~~ii~ell~~~-~~~~l~~L~~d~~gnyViq~~l~~~~ 296 (333)
T 3bwt_A 243 KFGSNVIEKILKTAI--VSEPMILEILNNG-GETGIQSLLNDSYGNYVLQTALDISH 296 (333)
T ss_dssp TTHHHHHHHHHTSHH--HHHHHHHHHHHTT-HHHHHHHHHTSTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCC--HHHHHHHHHHHCC-CCHHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 277999999980620--1699999998246-85679998718807899999999666
No 6
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=1.00 E-value=1 Score=378.23 Aligned_cols=297 Identities=25% Similarity=0.376 Sum_probs=143.6
Q ss_pred CCCHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 575244489998---31210124059999999999721999489999973119999999999999773775433857554
Q 005600 379 FEDSKKHSFLEE---LKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455 (688)
Q Consensus 379 ~~d~~~s~LLee---l~s~~~r~~~L~~I~G~I~eLa~dq~GSRVIQklLe~~s~Eer~~If~EI~~~i~eLmtD~fGn~ 455 (688)
+.|..++++++. ..+++++..++.++.+++.+|++|++|++++|++|++++++++..|++++.+++.+|+.|++|++
T Consensus 32 a~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~r 111 (351)
T 3gvo_A 32 SQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCR 111 (351)
T ss_dssp HTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHH
T ss_pred HCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_conf 26986369999997139899999999999885898971816629999999609999999999998766998860788689
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHCHHHHHCCCCCCHHHHHHHHC
Q ss_conf 88787202899999999999985097554056523999999864188999999996200151542165775246686502
Q 005600 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIEC 535 (688)
Q Consensus 456 VIQKLLe~gs~eq~~~Ii~~L~g~i~~Ls~h~yGSrVIQklLe~a~~eqk~~Li~EL~g~i~~L~kdq~GnhVIQklLe~ 535 (688)
|||++++.++.+++..|++++.+++..|+.|.+|++|+|++++.++.+++..|++.+.+++..++.+.+|++|+|++|+.
T Consensus 112 vvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~ 191 (351)
T 3gvo_A 112 VIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEH 191 (351)
T ss_dssp HHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 99999996789999999998531699998710132799999976899999999999988899998075748999999997
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHH
Q ss_conf 89457999999988659774059873189999985159778899999999999999970978469999998509937899
Q 005600 536 VPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERT 615 (688)
Q Consensus 536 ~~~e~~~~II~~L~~~l~~Ls~hk~GS~VIQkiLe~~~~~~~r~~II~eIle~l~~La~DqyGNyVIQ~iLe~~~~keRk 615 (688)
++++.+..|++.+.+++..|+++++|++|||++|+++. ++.++.|++.+.+++..|++|+||++||+++|+++++++|+
T Consensus 192 ~~~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~~-~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~l~~~~~~~r~ 270 (351)
T 3gvo_A 192 CTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGR-PEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERA 270 (351)
T ss_dssp SCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSC-HHHHHHHHHTTTTCHHHHHTSTTHHHHHHHHHHHSCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHH
T ss_conf 89999999999986549961899438799999999675-34499999999988999854938899999999759999999
Q ss_pred HHHHHHHH-------HHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHC-CCCCHHHHHHHH
Q ss_conf 99999999-------99987049644999999998299999999999993498786402230-281326999994
Q 005600 616 QILSKLAG-------KIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLYY-KSRLAGSMLICL 682 (688)
Q Consensus 616 ~IIk~Lkg-------~l~eLs~~K~GS~VVEklL~~~~~~~Rk~Ii~ELlg~~~~~~~L~~L-~DqyGnyVLq~L 682 (688)
.|++.+.. .+..|+.++||++||+++|+.++++.|+.|++.+.+. +..| +++||+.|+.++
T Consensus 271 ~ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L~~~~~~~r~~i~~~i~~~------~~~L~~~~~g~~i~~kl 339 (351)
T 3gvo_A 271 LLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPH------ITTLRKYTYGKHILAKL 339 (351)
T ss_dssp HHHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHHHHCCHHHHHHHHHHHGGG------HHHHTTSTTTHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHH------HHHHHCCCCHHHHHHHH
T ss_conf 9999986126788727988069962679999999858999999999999999------99983698469999999
No 7
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=1.00 E-value=1 Score=349.70 Aligned_cols=265 Identities=17% Similarity=0.234 Sum_probs=238.0
Q ss_pred CCCHHHHHHHHHHH---CC-------CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHH--HHHHHH
Q ss_conf 57524448999831---21-------0124059999999999721999489999973119999999999999--773775
Q 005600 379 FEDSKKHSFLEELK---SS-------NAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEV--LPHASK 446 (688)
Q Consensus 379 ~~d~~~s~LLeel~---s~-------~~r~~~L~~I~G~I~eLa~dq~GSRVIQklLe~~s~Eer~~If~EI--~~~i~e 446 (688)
|.|+|++++++++. +. +++..+++.+.|++.+++.|++|||+||++|+.++.+++..|++|+ .+++.+
T Consensus 75 ~~d~fGNyvvQKlle~~~~~~~~~~~~q~~~i~~~l~g~v~~L~~~~~GsrvvQk~le~~~~~~~~~iv~eL~~~~~i~~ 154 (412)
T 3k62_A 75 STNIFGNYLVQSVIGISLATNDDGYTKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALPRDARLIA 154 (412)
T ss_dssp HTSTTHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHHTSCCSHHHHH
T ss_pred HHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHH
T ss_conf 83729889999999848911232439999999999999999998174524999999995788899999999704601899
Q ss_pred HHCCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHCH------------HHHH----HH
Q ss_conf 4338575548878720289999999999998--5097554056523999999864188------------9999----99
Q 005600 447 LMTDVFGNYVIQKFFEHGSPDQRKELAEKLV--GQVLPLSLQMYGCRVIQKALEVIEL------------HQKS----QL 508 (688)
Q Consensus 447 LmtD~fGn~VIQKLLe~gs~eq~~~Ii~~L~--g~i~~Ls~h~yGSrVIQklLe~a~~------------eqk~----~L 508 (688)
|++|++|||||||+|++++++++.+|++.+. +++.+|++|+|||+|||++|+++.. +++. .|
T Consensus 155 L~~D~~GNhVIQK~Le~~~~~~~~~I~~~~~~~~~~~~la~h~~GcrVvQk~le~~~~~~~~~~~~~~~~~qr~~il~~L 234 (412)
T 3k62_A 155 ICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLRERALQRL 234 (412)
T ss_dssp HHHCTTTHHHHHHHHHHSCHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTSCSGGGTTSCHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 97196436999999996999999999998714136999855963599999999966741122001000388999999999
Q ss_pred HHHHHHCHHHHHCCCCCCHHHHHHHHCCCHHH-HHHHHH-HHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99620015154216577524668650289457-999999-9886597740598731899999851597788999999999
Q 005600 509 VLELDGHVMRCVRDQNGNHVIQKCIECVPAEK-IEFIIS-AFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEIL 586 (688)
Q Consensus 509 i~EL~g~i~~L~kdq~GnhVIQklLe~~~~e~-~~~II~-~L~~~l~~Ls~hk~GS~VIQkiLe~~~~~~~r~~II~eIl 586 (688)
+.++..+...|+.|+|||||+|++|+...++. +..|++ .+.+++++||+|||||+||++||+++. ++.+..|+++|+
T Consensus 235 ~~~I~~~~~~L~~dq~GNyViQ~iL~~g~~~~~r~~ii~~~l~~~~~~LS~~KfgSnVVek~L~~~~-~~~r~~ii~ei~ 313 (412)
T 3k62_A 235 MTSVTNRCQELATNEYANYIIQHIVSNDDLAVYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHAP-LELLAEMMDEIF 313 (412)
T ss_dssp HHHHHHTHHHHHHSTTTHHHHHHHHHCGGGHHHHHHHHHHHTTTCHHHHHTSTTHHHHHHHHHHHCC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-HHHHHHHHHHHH
T ss_conf 9999999999864842029999999629905579999999999889999604076899999998599-999999999998
Q ss_pred H-----------HHHHHHHCCCHHHHHHHHHHCCCHH--------------------HHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 9-----------9999970978469999998509937--------------------89999999999999870496449
Q 005600 587 E-----------SAFALAQDQYGNYVTQHVLERGKSY--------------------ERTQILSKLAGKIVQMSQHKYAS 635 (688)
Q Consensus 587 e-----------~l~~La~DqyGNyVIQ~iLe~~~~k--------------------eRk~IIk~Lkg~l~eLs~~K~GS 635 (688)
. .+..|++|+|||||||++|+.+++. .++.|+.+++++...|...++|+
T Consensus 314 ~~~~~~~~~~~~~l~~L~~DqyGNYViQ~~L~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~L~~~~~Gk 393 (412)
T 3k62_A 314 DGYIPHPDTGKDALDIMMFHQFGNYVVQCMLTICCDAVSGRRQTKEGGYDHAISFQDWLKKLHSRVTKERHRLSRFSSGK 393 (412)
T ss_dssp HSSCCCTTTCCCHHHHHHHSTTHHHHHHHHHHHHHHHHTTSSCCEETTEETHHHHHHHHHHHHHHHHHTHHHHTTSHHHH
T ss_pred HHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 50357765451699998669936899999999754633220110122113445467899999999988788744699712
Q ss_pred HHHHHHHHH
Q ss_conf 999999982
Q 005600 636 NVVEKCLEY 644 (688)
Q Consensus 636 ~VVEklL~~ 644 (688)
+|++++-+.
T Consensus 394 ~i~~~l~~~ 402 (412)
T 3k62_A 394 KMIETLANL 402 (412)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 899999975
No 8
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=343.23 Aligned_cols=266 Identities=17% Similarity=0.276 Sum_probs=212.9
Q ss_pred CCCHHHHHHHHHHH---CCCHHHHHHHH-HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH-HHHHHHCCCCC
Q ss_conf 57524448999831---21012405999-999999972199948999997311999999999999977-37754338575
Q 005600 379 FEDSKKHSFLEELK---SSNAQKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLP-HASKLMTDVFG 453 (688)
Q Consensus 379 ~~d~~~s~LLeel~---s~~~r~~~L~~-I~G~I~eLa~dq~GSRVIQklLe~~s~Eer~~If~EI~~-~i~eLmtD~fG 453 (688)
+.|++++++++++. +.+++..++.. +.|++..++.|++|||++|++|+.++.+++..|+.|+.+ ++..|++|++|
T Consensus 66 ~~d~~Gn~vvQklle~~~~~~~~~li~~~l~g~v~~Ls~~~~G~rvvQk~ie~~~~~~~~~li~eL~~~~~~~L~~D~~G 145 (382)
T 3v71_A 66 CHSRNGNFIVQKLVELATPAEQRELLRQMIDGGLLAMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMCTDQIS 145 (382)
T ss_dssp HSSTTHHHHHHHHHHTCCHHHHHHHHHHHHHTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTSCHHHHHHSTTT
T ss_pred HCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHCCCCC
T ss_conf 62828879999999859999999999997311398877375056999999997899999999998541266999618561
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHCHHH-------H----HHHHHHHHHCHHHHH
Q ss_conf 548878720289999999999998--509755405652399999986418899-------9----999996200151542
Q 005600 454 NYVIQKFFEHGSPDQRKELAEKLV--GQVLPLSLQMYGCRVIQKALEVIELHQ-------K----SQLVLELDGHVMRCV 520 (688)
Q Consensus 454 n~VIQKLLe~gs~eq~~~Ii~~L~--g~i~~Ls~h~yGSrVIQklLe~a~~eq-------k----~~Li~EL~g~i~~L~ 520 (688)
||||||+|++++++++.+|++.+. +++..|++|+|||+|||++|++++.++ + ..|+.++.++...|+
T Consensus 146 nhVIQk~le~~~~~~~~~Ii~~~~~~~~~~~la~h~~Gc~VlQ~~le~~~~~~k~~~~~~r~~~l~~l~~~I~~~~~~L~ 225 (382)
T 3v71_A 146 IHVIQRVVKQLPVDMWTFFVHFLSSGDSLMAVCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLS 225 (382)
T ss_dssp HHHHHHHHTTSCTTTSHHHHHHHHSTTHHHHHHHSTTHHHHHHHHHHHHTCCSSSTTHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 51999999978999999999999545311768269511599999999688764211455789999999999999899986
Q ss_pred CCCCCCHHHHHHHHCCCH--HHHHHHHH-HHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH----------
Q ss_conf 165775246686502894--57999999-98865977405987318999998515977889999999999----------
Q 005600 521 RDQNGNHVIQKCIECVPA--EKIEFIIS-AFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILE---------- 587 (688)
Q Consensus 521 kdq~GnhVIQklLe~~~~--e~~~~II~-~L~~~l~~Ls~hk~GS~VIQkiLe~~~~~~~r~~II~eIle---------- 587 (688)
.|+|||||+|++|+.... ..+..|++ .+.+++++|++||+||+||++||+++. ++.+..|+++|++
T Consensus 226 ~d~~GNyVIQ~iL~~~~~~e~~r~~ii~~~l~~~~~~Ls~~k~gS~Vvek~l~~~~-~~~r~~ii~el~~~~~~~~~~~~ 304 (382)
T 3v71_A 226 SNEFANYVIQYVIKSSGIMEMYRDTIIDKCLLRNLLSMSQDKYASHVIEGAFLFAP-PALLHEMMEEIFSGYVKDVESNR 304 (382)
T ss_dssp TSTTTHHHHHHHHTCCSTHHHHHHHHHHHTTTTCHHHHTTSTTHHHHHHHHHHHCC-HHHHHHHHHHHCC--CCCSSSCC
T ss_pred HCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-HHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 47520199999984499747889999999999989999657067599999998699-99999999999821345555652
Q ss_pred -HHHHHHHCCCHHHHHHHHHHCCCHH-------------------HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf -9999970978469999998509937-------------------899999999999998704964499999999829
Q 005600 588 -SAFALAQDQYGNYVTQHVLERGKSY-------------------ERTQILSKLAGKIVQMSQHKYASNVVEKCLEYG 645 (688)
Q Consensus 588 -~l~~La~DqyGNyVIQ~iLe~~~~k-------------------eRk~IIk~Lkg~l~eLs~~K~GS~VVEklL~~~ 645 (688)
.+..|++|+|||||||++|+.+++. .++.|+.++++|+..|...++|++|++++.+++
T Consensus 305 ~~l~~l~~D~ygNyVvQ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~Gk~i~~~l~~~~ 382 (382)
T 3v71_A 305 DALDILLFHQYGNYVVQQMISICTAALIGKEERELPPAILLLYSGWYEKMKQRVLQHASRLERFSSGKKIIDSVMRHG 382 (382)
T ss_dssp CHHHHHHTCTTHHHHHHHHHHHHHHHCC-----CCCTTTHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHC-
T ss_pred HHHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf 589998779971399999999743402341001230567765468999999999988987611886389999987339
No 9
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=1.00 E-value=1 Score=336.03 Aligned_cols=298 Identities=23% Similarity=0.333 Sum_probs=273.7
Q ss_pred CCCHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 57524448999831---210124059999999999721999489999973119999999999999773775433857554
Q 005600 379 FEDSKKHSFLEELK---SSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455 (688)
Q Consensus 379 ~~d~~~s~LLeel~---s~~~r~~~L~~I~G~I~eLa~dq~GSRVIQklLe~~s~Eer~~If~EI~~~i~eLmtD~fGn~ 455 (688)
+.+..++++++.+. +.+++..+++++.+++.+|+.|++|+++||++|++++.+++..|++++.+++.+|++|+||++
T Consensus 37 ~~d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~r 116 (369)
T 3k49_A 37 CKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACR 116 (369)
T ss_dssp HTSHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHH
T ss_pred HCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 72872309999986629999999999999998999864851155899999739999999999998620898851755489
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHCHHHHHCCCCCCHHHHHHHHC
Q ss_conf 88787202899999999999985097554056523999999864188999999996200151542165775246686502
Q 005600 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIEC 535 (688)
Q Consensus 456 VIQKLLe~gs~eq~~~Ii~~L~g~i~~Ls~h~yGSrVIQklLe~a~~eqk~~Li~EL~g~i~~L~kdq~GnhVIQklLe~ 535 (688)
|+|+++++++++++..|+.++.+++..|+.|++|++|||++|+.++.+.+..|++.+.+++..++.+++|++|+|+||+.
T Consensus 117 VlQk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~ 196 (369)
T 3k49_A 117 VIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEF 196 (369)
T ss_dssp HHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 99999975899999999999999999995174455499999971999999999999999999996787668299999986
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHH-----HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
Q ss_conf 89457999999988659774059873189999985159778-----8999999999999999709784699999985099
Q 005600 536 VPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQ-----QGQCIVDEILESAFALAQDQYGNYVTQHVLERGK 610 (688)
Q Consensus 536 ~~~e~~~~II~~L~~~l~~Ls~hk~GS~VIQkiLe~~~~~~-----~r~~II~eIle~l~~La~DqyGNyVIQ~iLe~~~ 610 (688)
++++.+..|++.+.+++..|+.+++|++|+|.+|+.+.+.. .+..|++.+.+++..|++++||++||+++|+.++
T Consensus 197 ~~~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~~~~~~~~~~~~~i~~~l~~~~~~Ls~~k~gS~Vvek~l~~~~ 276 (369)
T 3k49_A 197 GSSEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIKQEIIETVANNVVEYSKHKFASNVVEKSILYGS 276 (369)
T ss_dssp SCHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCTTSCHHHHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 89999999999999999999659729999999995389032235767999999999999999861575699999998399
Q ss_pred HHHHHHHHHHHHH-------------HHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHC-C-CCCH
Q ss_conf 3789999999999-------------99987049644999999998299999999999993498786402230-2-8132
Q 005600 611 SYERTQILSKLAG-------------KIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLYY-K-SRLA 675 (688)
Q Consensus 611 ~keRk~IIk~Lkg-------------~l~eLs~~K~GS~VVEklL~~~~~~~Rk~Ii~ELlg~~~~~~~L~~L-~-DqyG 675 (688)
+++|+.|++.+.+ .+..|+.++||++||+++|+.+++..++.+++++... |..| + +.||
T Consensus 277 ~~~r~~ii~~l~~~~~~~~~~~~~~~~l~~L~~D~~gNyViq~~l~~~~~~~~~~l~~~i~p~------l~~L~~~~~~G 350 (369)
T 3k49_A 277 KNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANYVIQKLVNVSEGEGKKLIVIAIRAY------LDKLNKSNSLG 350 (369)
T ss_dssp HHHHHHHHTTTSCSSHHHHHTCCTTSHHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHHHH------HHHHHHCC--C
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHH------HHHHHCCCCCC
T ss_conf 999999999985556432112356527999984730589999999967888999999999999------99985146676
Q ss_pred HHHHHHH
Q ss_conf 6999994
Q 005600 676 GSMLICL 682 (688)
Q Consensus 676 nyVLq~L 682 (688)
++++.++
T Consensus 351 ~~~~~~~ 357 (369)
T 3k49_A 351 NRHLASV 357 (369)
T ss_dssp CCCCHHH
T ss_pred CHHHHHH
T ss_conf 1599999
No 10
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=1.00 E-value=1 Score=320.41 Aligned_cols=296 Identities=19% Similarity=0.288 Sum_probs=270.7
Q ss_pred CCCHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 5752444899983---1210124059999999999721999489999973119999999999999773775433857554
Q 005600 379 FEDSKKHSFLEEL---KSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455 (688)
Q Consensus 379 ~~d~~~s~LLeel---~s~~~r~~~L~~I~G~I~eLa~dq~GSRVIQklLe~~s~Eer~~If~EI~~~i~eLmtD~fGn~ 455 (688)
+.+..++++++.+ .+.+++..+++++.+++.+|+.|++|++++|++|+.++.+++..|++++.+++.+|++|++|++
T Consensus 19 ~~~q~gsr~iQ~~l~~~~~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~~~~~~l~~~~~G~r 98 (333)
T 3bwt_A 19 CKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKISSPHFVEISLNPHGTR 98 (333)
T ss_dssp TSSHHHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHHSTTHHH
T ss_pred HCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 65847139999987629999999999999988999955853279999999629999999999998748999985555528
Q ss_pred HHHHHHHCC-CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHCHHHHHCCCCCCHHHHHHHH
Q ss_conf 887872028-9999999999998509755405652399999986418899999999620015154216577524668650
Q 005600 456 VIQKFFEHG-SPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIE 534 (688)
Q Consensus 456 VIQKLLe~g-s~eq~~~Ii~~L~g~i~~Ls~h~yGSrVIQklLe~a~~eqk~~Li~EL~g~i~~L~kdq~GnhVIQklLe 534 (688)
|||++++++ +++++..|++++.+++..|+.|.+|++|+|++++..+.+.+..+++.+.+++..++++++|++|+|+|++
T Consensus 99 viQ~~l~~~~~~~~~~~i~~el~~~~~~L~~d~~gn~Viqk~l~~~~~~~~~~i~~~l~~~~~~l~~~~~Gs~Vvq~~l~ 178 (333)
T 3bwt_A 99 ALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRHGCCVLQRCLD 178 (333)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHHSHHHHHTSTTHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99988986381999999999999989999419762689999999779988999999999989999658361799999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHH---HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCH
Q ss_conf 289457999999988659774059873189999985159778---89999999999999997097846999999850993
Q 005600 535 CVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQ---QGQCIVDEILESAFALAQDQYGNYVTQHVLERGKS 611 (688)
Q Consensus 535 ~~~~e~~~~II~~L~~~l~~Ls~hk~GS~VIQkiLe~~~~~~---~r~~II~eIle~l~~La~DqyGNyVIQ~iLe~~~~ 611 (688)
+++++.+..|++.+.+++..|+.+++|++|||++|+.+.+.. .+..|++.+.+++..|+.++||++|++++|+.+.
T Consensus 179 ~~~~~~~~~l~~el~~~~~~L~~d~~GnyVvQ~~L~~~~~~~~~~~~~~ii~~l~~~~~~Ls~~k~gs~Vvek~l~~~~- 257 (333)
T 3bwt_A 179 HGTTEQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIHKFGSNVIEKILKTAI- 257 (333)
T ss_dssp HCCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHTSHH-
T ss_pred HCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC-
T ss_conf 2999999999999999899980598289999999983872002036999999999999999706277999999980620-
Q ss_pred HHHHHHHHHHH-----HHHHHHHCCCCHHHHHHHHHHHCCHH---HHHHHHHHHHCCCCCCCHH-HHC-CCCCHHHHHHH
Q ss_conf 78999999999-----99998704964499999999829999---9999999993498786402-230-28132699999
Q 005600 612 YERTQILSKLA-----GKIVQMSQHKYASNVVEKCLEYGDTA---ERELLIEEILGQSEENDNL-LYY-KSRLAGSMLIC 681 (688)
Q Consensus 612 keRk~IIk~Lk-----g~l~eLs~~K~GS~VVEklL~~~~~~---~Rk~Ii~ELlg~~~~~~~L-~~L-~DqyGnyVLq~ 681 (688)
.++.++..+. +++..|+.++||++|++++|+.+++. .++.+++++... + ..| .++||+.|+.+
T Consensus 258 -~~~~ii~ell~~~~~~~l~~L~~d~~gnyViq~~l~~~~~~~~~~~~~l~~~l~p~------l~~~lr~~~~G~~i~~~ 330 (333)
T 3bwt_A 258 -VSEPMILEILNNGGETGIQSLLNDSYGNYVLQTALDISHKQNDYLYKRLSEIVAPL------LVGPIRNTPHGKRIIGM 330 (333)
T ss_dssp -HHHHHHHHHHHTTHHHHHHHHHTSTTHHHHHHHHHHHHHHHCHHHHHHHHHHHGGG------CCGGGGGSHHHHHHHTT
T ss_pred -HHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH------CHHHHCCCCCHHHHHHH
T ss_conf -16999999982468567999871880789999999966686599999999999874------55654689977889998
Q ss_pred H
Q ss_conf 4
Q 005600 682 L 682 (688)
Q Consensus 682 L 682 (688)
|
T Consensus 331 l 331 (333)
T 3bwt_A 331 L 331 (333)
T ss_dssp S
T ss_pred H
T ss_conf 6
Done!