BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005601
         (688 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
            Chicken Gizzard Smooth Muscle Myosin With Regulatory
            Light Chain In The Dephosphorylated State. Only C Alphas
            Provided For Regulatory Light Chain. Only Backbone Atoms
            Provided For S2 Fragment.
 pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
            Chicken Gizzard Smooth Muscle Myosin With Regulatory
            Light Chain In The Dephosphorylated State. Only C Alphas
            Provided For Regulatory Light Chain. Only Backbone Atoms
            Provided For S2 Fragment
          Length = 1184

 Score = 32.3 bits (72), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 9/77 (11%)

Query: 209  QIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEI 268
            QIAE Q+  Q+  LK +L +  E L  +  +   LE +  ++ N      K++ ELE+ I
Sbjct: 1075 QIAELQA--QIAELKAQLAKKEEELQAALAR---LEDETSQKNNAL----KKIRELESHI 1125

Query: 269  KKLREELESEKAAREVA 285
              L+E+LESEKAAR  A
Sbjct: 1126 SDLQEDLESEKAARNKA 1142


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.306    0.125    0.339 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,138,585
Number of Sequences: 62578
Number of extensions: 793468
Number of successful extensions: 2563
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 2431
Number of HSP's gapped (non-prelim): 149
length of query: 688
length of database: 14,973,337
effective HSP length: 105
effective length of query: 583
effective length of database: 8,402,647
effective search space: 4898743201
effective search space used: 4898743201
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)