BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005601
(688 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A8IQE0|CCD39_CHLRE Coiled-coil domain-containing protein 39 OS=Chlamydomonas
reinhardtii GN=CCDC39 PE=1 SV=1
Length = 894
Score = 40.8 bits (94), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 92/190 (48%), Gaps = 21/190 (11%)
Query: 236 SDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELD 295
+D +V E +V K+++V A + R EEL N+++ ++ L KAA E+A V +
Sbjct: 289 ADARVAYYEREVGKQRDVLAREQARTEELNNQVELVKATLS--KAATELAQRTVENKQ-- 344
Query: 296 ILAATRDLDFERRRLKAARERIMLRETQLR-------AFYSTTEEISVLFARQQEQLKAM 348
A DLD +R++L AAR+R ++ + +L + + E+ + ++ +LKA+
Sbjct: 345 ---AREDLDAKRQKLDAARKRFVVLKRKLENEFGNLDSMEAKASELEAMRRGEEARLKAI 401
Query: 349 QK--TLEDEENYENTSVDIDLCVPDGENSRTIVGEKLPNGHHSNSAAKADSSGEASTTEK 406
K L +E Y+ + V DL + E I G G + N AA+ + E
Sbjct: 402 LKEHELLKKEQYKRSQVLFDLRQKERELISEISG---GQGQNKNLAARIHALDEQVVA-- 456
Query: 407 HDCDIRSQEE 416
+RS+EE
Sbjct: 457 RAGGVRSEEE 466
>sp|P49025|CTRO_MOUSE Citron Rho-interacting kinase OS=Mus musculus GN=Cit PE=1 SV=3
Length = 2055
Score = 37.4 bits (85), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 134/263 (50%), Gaps = 25/263 (9%)
Query: 89 HQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVT-- 146
H+L +D + E +++ +I+AEQ+ ++++L ++L ++++ TEA E++++ +
Sbjct: 607 HKLMKAKDQGKPEVGEYSKLEKINAEQQLKIQELQEKLEKAVKASTEATELLQNIRQAKE 666
Query: 147 -----IDELKTQLDEERNLRR--VDRENAEADLKAAVQKSQLETQEKLK-RLSDAASRRE 198
+++L + D +++ V+ E L+ V++ LET E+ + RL D +
Sbjct: 667 RAERELEKLHNREDSSEGIKKKLVEAEERRHSLENKVKR--LETMERRENRLKDDIQTKS 724
Query: 199 LEQQEVINK-LQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASW 257
+ Q++ +K L++ EK QV + L++ +++ + K+++L+ Q+ K+ S
Sbjct: 725 EQIQQMADKILELEEKHREAQVSAQHLEV-HLKQKEQHYEEKIKVLDNQIKKDLADKESL 783
Query: 258 KKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDI--------LAATRDLDFERRR 309
+ ++ E E + + L +KA +K+ LE I LAA L F +R
Sbjct: 784 ENMMQRHEEEAHEKGKILSEQKAMINAMDSKIRSLEQRIVELSEANKLAANSSL-FTQRN 842
Query: 310 LKAARERIMLRETQLRAFYSTTE 332
+KA E M+ E + + FY T+
Sbjct: 843 MKAQEE--MISELRQQKFYLETQ 863
>sp|Q08379|GOGA2_HUMAN Golgin subfamily A member 2 OS=Homo sapiens GN=GOLGA2 PE=1 SV=3
Length = 1002
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 72/302 (23%), Positives = 145/302 (48%), Gaps = 44/302 (14%)
Query: 29 DGPLSLDDFRSLQRSNTELRKQLESQV-------LEIDKLRNENRVVVERHEKEMKE--- 78
+GP S + + L+ +L L+S + I+KL+ +N+ + ++ E+E KE
Sbjct: 148 EGPASSANLKDLESRYQQLAVALDSSYVTNKQLNITIEKLKQQNQEITDQLEEEKKECHQ 207
Query: 79 ----MKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCT 134
++E + + ++ + +L Q LA + +++ E EDL RL S +
Sbjct: 208 KQGALREQLQV-HIQTIGILVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVG 266
Query: 135 E---ANEIMKSQKVTIDELKTQLDEERNLRRVD-RENAEADLKAAVQKSQLETQEKLKRL 190
E A + +Q+ D +L +ER+ R++ +N +++ +KS+LE EKL+ L
Sbjct: 267 ELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELE--EKLRVL 324
Query: 191 SDAASRRELEQQEVINKLQIAE---KQSSLQVES------LKLKLDETRE---RLVTSDN 238
+ +L +E+ KL++ E +Q S + E+ L+ ++E + L
Sbjct: 325 VTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVME 384
Query: 239 KVRLLETQVCKE-QNV---SASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLEL 294
VR L+ + K +N+ SA W++R++++ ++ LREE +E + ++V LE
Sbjct: 385 SVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLREE-------KECSMSRVQELET 437
Query: 295 DI 296
+
Sbjct: 438 SL 439
>sp|Q28298|RRBP1_CANFA Ribosome-binding protein 1 OS=Canis familiaris GN=RRBP1 PE=2 SV=1
Length = 1534
Score = 33.5 bits (75), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 82/166 (49%), Gaps = 23/166 (13%)
Query: 204 VINKLQIAEK-QSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRV- 261
+ +KL+ AE+ Q++LQ E D+ R L ++ ++ L+ V +E+ V WK +V
Sbjct: 1239 LASKLREAEETQNNLQAE-----CDQYRTILAETEGMLKDLQKSVEEEEQV---WKAKVS 1290
Query: 262 -------------EELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERR 308
+ LE+ ++KL+ ELES + RE + LE + AA+ + +
Sbjct: 1291 ATEEELQKSRVTVKHLEDIVEKLKGELESSEQVREHTSHLEAELEKHMAAASAECQSYAK 1350
Query: 309 RLKAARERIMLRETQLRAFYSTTEEISVLFARQQEQLKAMQKTLED 354
+ R+ ++ ++QL A S ++ S A ++QL M+ +ED
Sbjct: 1351 EVAGLRQLLLESQSQLDAAKSEAQKQSNELALVRQQLSEMKSHVED 1396
>sp|Q9P2E9|RRBP1_HUMAN Ribosome-binding protein 1 OS=Homo sapiens GN=RRBP1 PE=1 SV=4
Length = 1410
Score = 33.1 bits (74), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 23/166 (13%)
Query: 204 VINKLQIAEK-QSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRV- 261
+ +KL+ AE+ QS+LQ E D+ R L ++ +R L+ V +E+ V W+ +V
Sbjct: 1110 LASKLREAEETQSTLQAE-----CDQYRSILAETEGMLRDLQKSVEEEEQV---WRAKVG 1161
Query: 262 -------------EELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERR 308
+ LE ++KL+ ELES RE + LE + AA+ + +
Sbjct: 1162 AAEEELQKSRVTVKHLEEIVEKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAK 1221
Query: 309 RLKAARERIMLRETQLRAFYSTTEEISVLFARQQEQLKAMQKTLED 354
+ R+ ++ ++QL A S ++ S A ++QL M+ +ED
Sbjct: 1222 EVAGLRQLLLESQSQLDAAKSEAQKQSDELALVRQQLSEMKSHVED 1267
>sp|Q96CN5|LRC45_HUMAN Leucine-rich repeat-containing protein 45 OS=Homo sapiens GN=LRRC45
PE=2 SV=1
Length = 670
Score = 33.1 bits (74), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 92/175 (52%), Gaps = 31/175 (17%)
Query: 164 DRENAEADLKAAVQKSQLETQEKLKRLSD-----AASRRE-----LEQQEVINKLQIAEK 213
+R AE +L A +++LE Q++L L D A +R E L+Q++V+ + Q
Sbjct: 479 ERGQAEEELIKAKSQARLEEQQRLAHLEDKLRLLAQARDEAQGACLQQKQVVAEAQTRVS 538
Query: 214 QSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLRE 273
Q LQVE L+ +L+E ++ L D ++ V+ + RV EL+ + +L+
Sbjct: 539 QLGLQVEGLRRRLEELQQELSLKD------------QERVAEVSRVRV-ELQEQNGRLQA 585
Query: 274 ELESEKAAREVAWAKVSGLE--LDILAA-TRDLDFERRRLKAA-RERIMLRETQL 324
EL +++A RE K + LE L ++A+ R+ +R A+ RE++ LRE ++
Sbjct: 586 ELAAQEALRE----KAAALERQLKVMASDHREALLDRESENASLREKLRLREAEI 636
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.306 0.124 0.337
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 251,244,828
Number of Sequences: 539616
Number of extensions: 11169326
Number of successful extensions: 85430
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 3661
Number of HSP's that attempted gapping in prelim test: 56115
Number of HSP's gapped (non-prelim): 17971
length of query: 688
length of database: 191,569,459
effective HSP length: 124
effective length of query: 564
effective length of database: 124,657,075
effective search space: 70306590300
effective search space used: 70306590300
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 65 (29.6 bits)