Query 005601
Match_columns 688
No_of_seqs 52 out of 54
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 01:59:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005601.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005601hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0977 Nuclear envelope prote 100.0 6E-46 1.3E-50 402.0 26.0 262 34-309 55-392 (546)
2 PF00038 Filament: Intermediat 100.0 7.7E-35 1.7E-39 289.9 35.0 262 34-309 17-312 (312)
3 KOG0161 Myosin class II heavy 99.1 5.4E-07 1.2E-11 111.0 39.1 240 95-353 949-1209(1930)
4 TIGR02169 SMC_prok_A chromosom 99.1 4.2E-06 9.2E-11 95.8 43.5 38 313-350 460-497 (1164)
5 TIGR02168 SMC_prok_B chromosom 99.1 2.2E-06 4.8E-11 97.4 39.0 15 546-560 1111-1125(1179)
6 TIGR02169 SMC_prok_A chromosom 99.0 1.2E-05 2.5E-10 92.3 42.1 30 288-317 442-471 (1164)
7 TIGR02168 SMC_prok_B chromosom 99.0 5.5E-06 1.2E-10 94.2 37.4 32 212-243 819-850 (1179)
8 PRK02224 chromosome segregatio 99.0 1.8E-05 3.9E-10 90.2 41.2 112 205-317 525-636 (880)
9 PF07888 CALCOCO1: Calcium bin 98.9 5.1E-06 1.1E-10 92.7 34.4 167 121-290 259-448 (546)
10 KOG0161 Myosin class II heavy 98.9 3.4E-05 7.3E-10 95.8 41.8 239 68-306 1042-1369(1930)
11 PRK02224 chromosome segregatio 98.8 3E-05 6.6E-10 88.4 37.8 12 72-83 211-222 (880)
12 COG1196 Smc Chromosome segrega 98.7 0.00021 4.6E-09 85.3 40.9 98 207-304 839-936 (1163)
13 COG1196 Smc Chromosome segrega 98.7 0.00022 4.8E-09 85.1 39.7 112 43-154 187-311 (1163)
14 PF00038 Filament: Intermediat 98.7 0.00014 3.1E-09 73.6 32.3 253 47-326 9-273 (312)
15 TIGR00606 rad50 rad50. This fa 98.6 0.00032 6.9E-09 84.6 40.3 28 332-359 1097-1124(1311)
16 PRK03918 chromosome segregatio 98.6 0.00071 1.5E-08 77.1 39.9 38 210-247 391-428 (880)
17 PHA02562 46 endonuclease subun 98.6 1.6E-05 3.5E-10 85.7 25.6 238 20-278 159-398 (562)
18 PF01576 Myosin_tail_1: Myosin 98.6 9.9E-09 2.2E-13 118.4 0.0 292 35-356 264-594 (859)
19 TIGR00606 rad50 rad50. This fa 98.5 0.00038 8.2E-09 84.1 36.2 56 260-317 1048-1103(1311)
20 PRK03918 chromosome segregatio 98.5 0.0041 8.9E-08 71.1 42.0 37 92-128 394-430 (880)
21 PRK11637 AmiB activator; Provi 98.5 0.0002 4.3E-09 76.6 28.7 75 87-161 45-119 (428)
22 PF00261 Tropomyosin: Tropomyo 98.5 0.00013 2.8E-09 72.9 25.6 197 86-284 5-222 (237)
23 KOG4674 Uncharacterized conser 98.4 0.002 4.4E-08 80.0 38.8 301 36-352 1168-1541(1822)
24 PF12128 DUF3584: Protein of u 98.4 0.00082 1.8E-08 80.8 34.6 270 87-359 598-881 (1201)
25 PF05701 WEMBL: Weak chloropla 98.4 0.0081 1.7E-07 66.9 40.9 58 21-83 14-71 (522)
26 PF07888 CALCOCO1: Calcium bin 98.4 0.0026 5.7E-08 71.7 35.5 80 208-297 323-402 (546)
27 KOG0964 Structural maintenance 98.3 0.00081 1.7E-08 79.3 31.8 266 35-316 198-503 (1200)
28 KOG0996 Structural maintenance 98.3 0.0028 6E-08 76.0 36.0 192 111-303 378-593 (1293)
29 PRK11637 AmiB activator; Provi 98.3 0.00054 1.2E-08 73.4 27.5 79 84-162 49-127 (428)
30 PF00261 Tropomyosin: Tropomyo 98.3 0.00073 1.6E-08 67.7 26.4 223 37-282 3-234 (237)
31 KOG0995 Centromere-associated 98.3 0.0067 1.5E-07 68.6 35.1 223 92-330 262-550 (581)
32 PF12128 DUF3584: Protein of u 98.2 0.01 2.2E-07 71.7 38.9 35 308-342 899-933 (1201)
33 PF01576 Myosin_tail_1: Myosin 98.2 2.3E-07 4.9E-12 107.4 0.0 291 38-332 98-422 (859)
34 PF10174 Cast: RIM-binding pro 98.2 0.0081 1.8E-07 70.2 36.3 195 29-249 177-410 (775)
35 PF07111 HCR: Alpha helical co 98.2 0.018 3.9E-07 66.6 37.5 329 21-363 225-659 (739)
36 KOG4674 Uncharacterized conser 98.1 0.01 2.2E-07 74.1 35.2 281 56-339 805-1137(1822)
37 PF10174 Cast: RIM-binding pro 98.1 0.014 3E-07 68.4 34.6 204 84-302 338-598 (775)
38 PF09726 Macoilin: Transmembra 98.1 0.0033 7.1E-08 72.6 29.1 182 35-250 418-613 (697)
39 PF05701 WEMBL: Weak chloropla 98.0 0.051 1.1E-06 60.7 39.1 266 62-332 115-413 (522)
40 KOG0996 Structural maintenance 98.0 0.018 3.9E-07 69.4 32.6 127 9-158 750-878 (1293)
41 KOG0980 Actin-binding protein 97.9 0.016 3.4E-07 68.3 31.1 232 78-327 329-569 (980)
42 PRK01156 chromosome segregatio 97.9 0.089 1.9E-06 61.2 38.0 30 87-116 520-549 (895)
43 COG1579 Zn-ribbon protein, pos 97.9 0.0052 1.1E-07 63.2 24.0 71 84-161 12-82 (239)
44 COG4942 Membrane-bound metallo 97.9 0.016 3.5E-07 63.8 29.1 68 87-154 43-110 (420)
45 KOG0971 Microtubule-associated 97.9 0.1 2.3E-06 62.1 36.3 239 84-347 271-543 (1243)
46 PRK01156 chromosome segregatio 97.9 0.11 2.4E-06 60.4 40.9 19 309-327 675-693 (895)
47 KOG0250 DNA repair protein RAD 97.9 0.023 4.9E-07 68.2 31.2 192 84-289 269-466 (1074)
48 PHA02562 46 endonuclease subun 97.9 0.028 6E-07 61.2 29.7 67 87-153 179-249 (562)
49 KOG4673 Transcription factor T 97.8 0.1 2.2E-06 60.8 34.8 124 217-340 605-761 (961)
50 TIGR02680 conserved hypothetic 97.8 0.047 1E-06 67.2 34.4 93 206-301 871-963 (1353)
51 KOG0994 Extracellular matrix g 97.8 0.017 3.7E-07 69.7 29.1 184 84-280 1558-1745(1758)
52 KOG0933 Structural maintenance 97.8 0.061 1.3E-06 64.4 33.4 319 19-351 656-1035(1174)
53 PRK04863 mukB cell division pr 97.8 0.22 4.7E-06 62.4 40.3 32 202-233 492-529 (1486)
54 PRK04863 mukB cell division pr 97.8 0.046 1E-06 68.0 34.1 49 84-132 288-336 (1486)
55 KOG0612 Rho-associated, coiled 97.8 0.096 2.1E-06 63.8 35.3 54 260-313 694-747 (1317)
56 PRK09039 hypothetical protein; 97.8 0.0051 1.1E-07 65.3 22.8 27 122-148 65-91 (343)
57 TIGR03007 pepcterm_ChnLen poly 97.8 0.0035 7.7E-08 67.6 21.2 64 221-288 314-377 (498)
58 KOG0250 DNA repair protein RAD 97.7 0.18 4E-06 60.8 35.8 64 263-326 745-808 (1074)
59 KOG4643 Uncharacterized coiled 97.7 0.16 3.4E-06 61.2 34.6 228 40-279 182-463 (1195)
60 COG4942 Membrane-bound metallo 97.7 0.069 1.5E-06 59.0 29.7 73 89-161 38-110 (420)
61 KOG0963 Transcription factor/C 97.7 0.16 3.5E-06 58.4 32.5 232 84-335 68-350 (629)
62 PF13514 AAA_27: AAA domain 97.7 0.18 3.8E-06 60.7 34.8 63 215-282 894-956 (1111)
63 PF15070 GOLGA2L5: Putative go 97.6 0.08 1.7E-06 60.8 30.3 90 202-291 264-385 (617)
64 KOG4643 Uncharacterized coiled 97.6 0.096 2.1E-06 62.8 31.2 145 98-243 396-556 (1195)
65 TIGR03185 DNA_S_dndD DNA sulfu 97.6 0.21 4.6E-06 56.8 35.3 74 225-298 392-467 (650)
66 COG4372 Uncharacterized protei 97.6 0.08 1.7E-06 58.4 28.2 216 84-333 69-287 (499)
67 KOG0612 Rho-associated, coiled 97.6 0.21 4.6E-06 61.0 33.4 27 219-245 625-651 (1317)
68 COG1579 Zn-ribbon protein, pos 97.6 0.013 2.8E-07 60.4 20.8 20 163-182 55-74 (239)
69 PF09787 Golgin_A5: Golgin sub 97.6 0.12 2.5E-06 57.6 29.5 288 39-338 106-420 (511)
70 PF15619 Lebercilin: Ciliary p 97.5 0.023 5E-07 56.6 21.7 79 202-283 95-181 (194)
71 PF05622 HOOK: HOOK protein; 97.5 2E-05 4.3E-10 89.4 0.0 258 27-297 229-547 (713)
72 PRK04778 septation ring format 97.5 0.28 6E-06 55.3 37.7 105 233-337 350-460 (569)
73 TIGR01005 eps_transp_fam exopo 97.5 0.016 3.5E-07 66.1 22.7 115 174-293 288-403 (754)
74 KOG0933 Structural maintenance 97.5 0.12 2.7E-06 61.9 30.0 218 74-310 691-918 (1174)
75 TIGR03185 DNA_S_dndD DNA sulfu 97.5 0.31 6.6E-06 55.5 35.2 71 231-301 391-463 (650)
76 KOG4673 Transcription factor T 97.5 0.17 3.6E-06 59.1 29.9 126 37-162 455-597 (961)
77 PRK09039 hypothetical protein; 97.5 0.011 2.4E-07 62.8 19.8 47 111-157 47-93 (343)
78 KOG0976 Rho/Rac1-interacting s 97.5 0.2 4.4E-06 59.2 30.6 139 84-223 87-245 (1265)
79 KOG0977 Nuclear envelope prote 97.5 0.21 4.6E-06 56.9 30.3 157 26-187 27-196 (546)
80 KOG0994 Extracellular matrix g 97.4 0.46 1E-05 58.2 33.6 211 117-365 1511-1726(1758)
81 TIGR02680 conserved hypothetic 97.4 0.63 1.4E-05 57.7 37.1 67 116-182 275-341 (1353)
82 KOG0976 Rho/Rac1-interacting s 97.4 0.15 3.2E-06 60.3 28.8 163 84-254 265-482 (1265)
83 PF15070 GOLGA2L5: Putative go 97.4 0.46 1E-05 54.8 35.0 127 221-354 164-314 (617)
84 PF14662 CCDC155: Coiled-coil 97.3 0.066 1.4E-06 54.0 21.9 44 110-153 67-110 (193)
85 PF09726 Macoilin: Transmembra 97.3 0.16 3.4E-06 59.2 27.6 190 121-344 443-655 (697)
86 PF06705 SF-assemblin: SF-asse 97.3 0.25 5.4E-06 50.0 26.1 189 141-337 8-209 (247)
87 PF05010 TACC: Transforming ac 97.3 0.25 5.4E-06 50.2 25.5 181 40-243 21-201 (207)
88 COG0419 SbcC ATPase involved i 97.3 0.67 1.5E-05 54.8 39.7 75 87-162 272-346 (908)
89 PRK04778 septation ring format 97.3 0.5 1.1E-05 53.3 34.5 101 202-304 255-365 (569)
90 PF09755 DUF2046: Uncharacteri 97.3 0.4 8.6E-06 51.5 33.5 152 33-196 25-202 (310)
91 PRK11281 hypothetical protein; 97.2 0.77 1.7E-05 56.3 32.5 78 84-161 75-165 (1113)
92 PF09730 BicD: Microtubule-ass 97.2 0.83 1.8E-05 53.8 38.8 289 61-352 21-456 (717)
93 KOG1029 Endocytic adaptor prot 97.2 0.11 2.4E-06 61.1 24.2 65 222-286 435-502 (1118)
94 PF05483 SCP-1: Synaptonemal c 97.1 0.88 1.9E-05 53.3 35.9 110 36-149 371-482 (786)
95 TIGR03007 pepcterm_ChnLen poly 97.1 0.15 3.2E-06 55.4 23.8 150 130-301 160-331 (498)
96 PF14915 CCDC144C: CCDC144C pr 97.1 0.51 1.1E-05 50.6 31.8 72 203-274 158-229 (305)
97 COG0419 SbcC ATPase involved i 97.0 1.1 2.5E-05 52.9 40.7 19 600-618 873-893 (908)
98 KOG0980 Actin-binding protein 97.0 1.3 2.8E-05 53.2 31.2 102 131-240 424-531 (980)
99 KOG0018 Structural maintenance 97.0 0.49 1.1E-05 57.4 28.1 201 84-304 264-468 (1141)
100 KOG0946 ER-Golgi vesicle-tethe 97.0 1.4 3E-05 52.6 30.4 69 84-162 648-716 (970)
101 PF12718 Tropomyosin_1: Tropom 96.9 0.13 2.7E-06 49.1 18.6 36 210-245 87-122 (143)
102 KOG0963 Transcription factor/C 96.9 1.3 2.8E-05 51.4 29.6 125 35-159 114-270 (629)
103 PF08317 Spc7: Spc7 kinetochor 96.9 0.75 1.6E-05 48.6 27.7 67 202-271 222-288 (325)
104 KOG0971 Microtubule-associated 96.8 1.9 4E-05 52.2 32.8 28 72-99 281-314 (1243)
105 PF13851 GAS: Growth-arrest sp 96.8 0.23 4.9E-06 49.7 20.1 103 138-254 27-130 (201)
106 KOG1003 Actin filament-coating 96.8 0.77 1.7E-05 46.9 23.4 170 84-285 20-191 (205)
107 TIGR01005 eps_transp_fam exopo 96.7 0.33 7.2E-06 55.7 23.4 78 68-145 176-265 (754)
108 KOG0995 Centromere-associated 96.7 1.7 3.6E-05 50.1 35.8 262 36-300 236-566 (581)
109 PF15619 Lebercilin: Ciliary p 96.7 0.59 1.3E-05 46.9 21.7 169 36-230 13-191 (194)
110 TIGR03017 EpsF chain length de 96.7 0.65 1.4E-05 49.6 23.5 91 198-292 277-368 (444)
111 PF04849 HAP1_N: HAP1 N-termin 96.6 0.78 1.7E-05 49.3 23.4 42 84-125 85-126 (306)
112 PRK10929 putative mechanosensi 96.6 2.5 5.5E-05 52.0 30.4 60 84-143 60-128 (1109)
113 PF05622 HOOK: HOOK protein; 96.6 0.00057 1.2E-08 77.9 0.0 39 213-251 484-522 (713)
114 COG1340 Uncharacterized archae 96.6 1.4 3.1E-05 47.1 29.3 121 111-247 56-195 (294)
115 COG5185 HEC1 Protein involved 96.6 0.72 1.6E-05 52.3 23.4 177 97-276 303-550 (622)
116 PF12718 Tropomyosin_1: Tropom 96.6 0.31 6.6E-06 46.5 18.1 42 208-249 99-140 (143)
117 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.5 0.34 7.5E-06 45.1 18.0 44 119-162 5-48 (132)
118 COG1340 Uncharacterized archae 96.5 1.5 3.2E-05 47.0 32.4 58 105-162 36-93 (294)
119 PF14662 CCDC155: Coiled-coil 96.5 1.1 2.5E-05 45.4 24.6 134 110-248 8-147 (193)
120 TIGR01843 type_I_hlyD type I s 96.5 0.54 1.2E-05 48.9 20.8 18 35-52 81-98 (423)
121 PF13514 AAA_27: AAA domain 96.5 3.4 7.3E-05 50.2 40.7 213 84-301 668-931 (1111)
122 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.4 0.6 1.3E-05 43.5 19.0 93 133-241 5-97 (132)
123 PRK10929 putative mechanosensi 96.4 3.5 7.6E-05 50.9 30.0 170 84-254 53-238 (1109)
124 PF09728 Taxilin: Myosin-like 96.4 1.7 3.6E-05 46.3 33.6 175 84-283 87-268 (309)
125 PF09731 Mitofilin: Mitochondr 96.4 2.1 4.5E-05 48.0 26.2 13 290-302 430-442 (582)
126 PF10186 Atg14: UV radiation r 96.4 0.6 1.3E-05 46.6 20.0 80 202-281 76-155 (302)
127 PF04849 HAP1_N: HAP1 N-termin 96.4 1.9 4.1E-05 46.5 27.3 64 84-147 57-120 (306)
128 PF15397 DUF4618: Domain of un 96.4 1.7 3.7E-05 45.8 25.3 186 37-229 15-219 (258)
129 PF05667 DUF812: Protein of un 96.3 1.9 4.2E-05 49.7 25.8 150 98-248 323-478 (594)
130 COG3883 Uncharacterized protei 96.3 1.9 4.1E-05 45.6 26.2 176 93-272 28-217 (265)
131 KOG0982 Centrosomal protein Nu 96.3 2.7 5.9E-05 47.3 30.2 134 6-150 173-330 (502)
132 TIGR01843 type_I_hlyD type I s 96.3 1.3 2.7E-05 46.2 22.3 35 121-155 148-182 (423)
133 KOG0946 ER-Golgi vesicle-tethe 96.3 3.7 8E-05 49.2 27.8 79 84-162 680-761 (970)
134 PF03148 Tektin: Tektin family 96.3 2.3 5E-05 46.2 34.3 148 169-316 220-381 (384)
135 PF05911 DUF869: Plant protein 96.3 2.8 6.1E-05 49.9 27.2 95 203-300 645-739 (769)
136 KOG1029 Endocytic adaptor prot 96.2 3.6 7.8E-05 49.3 27.3 175 115-306 435-610 (1118)
137 PF08317 Spc7: Spc7 kinetochor 96.2 2.1 4.5E-05 45.3 26.2 54 201-254 207-260 (325)
138 KOG4593 Mitotic checkpoint pro 96.2 3.9 8.4E-05 48.2 29.6 70 93-162 134-203 (716)
139 KOG0018 Structural maintenance 96.2 1.9 4.2E-05 52.6 25.6 228 90-329 656-891 (1141)
140 PF05557 MAD: Mitotic checkpoi 96.2 0.0013 2.7E-08 75.2 0.0 54 195-248 273-329 (722)
141 KOG0978 E3 ubiquitin ligase in 96.2 4 8.6E-05 48.2 34.0 75 33-107 284-361 (698)
142 PF10473 CENP-F_leu_zip: Leuci 96.0 0.97 2.1E-05 43.7 18.4 128 104-271 11-138 (140)
143 KOG0243 Kinesin-like protein [ 95.9 6.3 0.00014 48.4 28.7 227 78-330 400-632 (1041)
144 PF09728 Taxilin: Myosin-like 95.9 2.9 6.3E-05 44.5 36.3 118 41-162 4-124 (309)
145 KOG0249 LAR-interacting protei 95.8 1.2 2.6E-05 52.6 21.0 118 36-156 29-157 (916)
146 PF05557 MAD: Mitotic checkpoi 95.8 0.0025 5.4E-08 72.9 0.0 30 188-217 249-278 (722)
147 COG3206 GumC Uncharacterized p 95.8 3.9 8.4E-05 44.7 24.9 111 69-182 178-293 (458)
148 PF05667 DUF812: Protein of un 95.8 2.3 4.9E-05 49.2 23.1 31 208-238 445-475 (594)
149 TIGR00634 recN DNA repair prot 95.7 3.1 6.8E-05 46.9 23.5 107 204-314 267-373 (563)
150 PF06160 EzrA: Septation ring 95.6 5.5 0.00012 45.3 34.0 132 202-340 312-459 (560)
151 PF05911 DUF869: Plant protein 95.6 5.1 0.00011 47.8 25.6 101 202-302 609-716 (769)
152 TIGR03017 EpsF chain length de 95.4 3.5 7.6E-05 44.2 21.9 38 125-162 165-202 (444)
153 COG3206 GumC Uncharacterized p 95.4 4.9 0.00011 43.9 23.1 193 120-312 184-398 (458)
154 PF05483 SCP-1: Synaptonemal c 95.4 8.3 0.00018 45.7 39.2 145 38-182 123-304 (786)
155 PF14988 DUF4515: Domain of un 95.4 3.7 7.9E-05 41.6 23.1 170 84-294 20-191 (206)
156 PF11559 ADIP: Afadin- and alp 95.3 0.85 1.8E-05 42.8 15.1 82 84-165 61-142 (151)
157 PF12795 MscS_porin: Mechanose 95.3 3.7 7.9E-05 41.5 25.0 32 84-115 33-64 (240)
158 PF10168 Nup88: Nuclear pore c 95.3 1.2 2.6E-05 52.3 19.1 151 183-351 559-714 (717)
159 PF15294 Leu_zip: Leucine zipp 95.1 0.95 2.1E-05 48.1 16.2 138 41-179 85-231 (278)
160 KOG2129 Uncharacterized conser 95.1 7.4 0.00016 44.0 25.8 73 15-87 26-109 (552)
161 PF04912 Dynamitin: Dynamitin 95.1 2.8 6E-05 45.3 20.1 222 34-271 93-387 (388)
162 TIGR01010 BexC_CtrB_KpsE polys 95.1 2 4.4E-05 45.3 18.7 54 235-288 246-300 (362)
163 PF09731 Mitofilin: Mitochondr 95.1 7.4 0.00016 43.8 25.2 30 241-273 363-392 (582)
164 KOG0978 E3 ubiquitin ligase in 95.1 9.7 0.00021 45.2 30.4 59 21-79 130-190 (698)
165 PF06008 Laminin_I: Laminin Do 95.1 4.6 0.0001 41.2 30.3 70 218-291 186-255 (264)
166 KOG0962 DNA repair protein RAD 95.1 14 0.0003 46.6 32.2 191 109-304 877-1079(1294)
167 KOG0249 LAR-interacting protei 94.9 3.9 8.6E-05 48.5 21.6 215 72-304 33-254 (916)
168 KOG4593 Mitotic checkpoint pro 94.8 12 0.00026 44.4 27.6 121 25-155 352-492 (716)
169 PF04156 IncA: IncA protein; 94.8 2.2 4.7E-05 41.0 16.4 73 86-158 78-150 (191)
170 KOG0999 Microtubule-associated 94.8 11 0.00024 44.0 30.5 212 29-290 2-225 (772)
171 PF08614 ATG16: Autophagy prot 94.6 0.41 8.9E-06 47.0 11.3 88 94-189 93-180 (194)
172 TIGR00634 recN DNA repair prot 94.6 10 0.00022 43.0 25.7 38 86-123 165-202 (563)
173 smart00787 Spc7 Spc7 kinetocho 94.6 7.7 0.00017 41.6 28.8 68 202-272 217-284 (312)
174 PF10186 Atg14: UV radiation r 94.6 5.6 0.00012 39.8 19.9 25 208-232 124-148 (302)
175 KOG4677 Golgi integral membran 94.5 8.6 0.00019 43.8 21.9 183 75-279 187-389 (554)
176 PRK11281 hypothetical protein; 94.4 18 0.0004 44.9 35.3 39 210-248 285-323 (1113)
177 KOG1899 LAR transmembrane tyro 94.4 2.3 5E-05 49.8 17.8 126 25-154 101-247 (861)
178 PF15254 CCDC14: Coiled-coil d 94.3 3.3 7.1E-05 49.4 19.3 51 192-242 482-533 (861)
179 PF15397 DUF4618: Domain of un 94.3 8.3 0.00018 40.8 21.0 160 61-232 50-229 (258)
180 PF06160 EzrA: Septation ring 94.3 12 0.00026 42.6 36.8 79 202-282 251-329 (560)
181 PRK10698 phage shock protein P 94.3 7 0.00015 39.8 23.8 40 112-151 33-72 (222)
182 PF09787 Golgin_A5: Golgin sub 94.2 12 0.00026 42.2 28.2 17 38-54 119-135 (511)
183 PF07798 DUF1640: Protein of u 94.2 6.1 0.00013 38.6 18.4 83 106-188 19-101 (177)
184 PF04012 PspA_IM30: PspA/IM30 94.1 6.5 0.00014 38.8 21.8 177 106-305 26-207 (221)
185 COG4477 EzrA Negative regulato 94.1 14 0.00031 42.7 31.6 118 202-341 346-463 (570)
186 PF06818 Fez1: Fez1; InterPro 94.1 8.1 0.00017 39.7 19.9 154 84-248 33-201 (202)
187 COG5185 HEC1 Protein involved 94.1 10 0.00022 43.6 21.6 167 136-326 262-435 (622)
188 PRK09841 cryptic autophosphory 94.0 4.7 0.0001 47.0 19.9 34 260-293 364-397 (726)
189 PF04012 PspA_IM30: PspA/IM30 94.0 6.9 0.00015 38.7 23.0 97 78-182 23-127 (221)
190 PF04111 APG6: Autophagy prote 94.0 0.87 1.9E-05 48.3 12.9 44 192-235 95-138 (314)
191 TIGR03319 YmdA_YtgF conserved 94.0 9.9 0.00021 43.3 21.7 70 99-168 72-141 (514)
192 PRK12704 phosphodiesterase; Pr 93.9 11 0.00023 43.1 21.8 67 102-168 81-147 (520)
193 KOG0979 Structural maintenance 93.9 15 0.00033 45.1 23.8 120 24-143 170-302 (1072)
194 PRK00106 hypothetical protein; 93.7 12 0.00025 43.2 21.7 65 104-168 98-162 (535)
195 PF11559 ADIP: Afadin- and alp 93.7 5.4 0.00012 37.5 16.2 82 87-168 57-138 (151)
196 KOG0243 Kinesin-like protein [ 93.6 24 0.00052 43.6 33.2 20 538-557 994-1013(1041)
197 TIGR00618 sbcc exonuclease Sbc 93.6 22 0.00048 43.1 36.7 12 306-317 526-537 (1042)
198 PRK10246 exonuclease subunit S 93.5 24 0.00052 43.2 40.9 31 256-286 728-758 (1047)
199 PF10168 Nup88: Nuclear pore c 93.3 8.4 0.00018 45.6 20.4 73 54-133 534-609 (717)
200 KOG1853 LIS1-interacting prote 93.2 14 0.00031 39.6 21.4 60 97-159 28-87 (333)
201 KOG0979 Structural maintenance 93.1 18 0.00039 44.6 22.8 52 111-162 284-335 (1072)
202 COG4372 Uncharacterized protei 93.0 19 0.00041 40.7 30.2 60 85-151 119-178 (499)
203 TIGR02971 heterocyst_DevB ABC 93.0 9.7 0.00021 39.2 18.2 49 128-176 94-148 (327)
204 PF04871 Uso1_p115_C: Uso1 / p 93.0 2.9 6.2E-05 39.9 13.3 78 227-304 30-108 (136)
205 PF10212 TTKRSYEDQ: Predicted 92.9 3.2 6.9E-05 47.5 15.7 66 95-160 419-484 (518)
206 PF13851 GAS: Growth-arrest sp 92.8 12 0.00026 37.7 23.6 44 69-112 4-57 (201)
207 PF04156 IncA: IncA protein; 92.8 7.4 0.00016 37.5 15.9 33 213-245 154-186 (191)
208 PRK10869 recombination and rep 92.7 22 0.00048 40.6 24.4 107 205-315 263-369 (553)
209 PF08614 ATG16: Autophagy prot 92.7 1.1 2.3E-05 44.2 10.4 87 202-288 94-180 (194)
210 KOG1853 LIS1-interacting prote 92.6 13 0.00029 39.9 18.7 100 222-324 50-156 (333)
211 PF06785 UPF0242: Uncharacteri 92.5 11 0.00024 41.6 18.3 138 84-229 77-220 (401)
212 PRK04406 hypothetical protein; 92.4 0.68 1.5E-05 40.3 7.7 52 111-162 5-56 (75)
213 PRK12704 phosphodiesterase; Pr 92.4 21 0.00045 40.8 21.2 95 101-195 73-167 (520)
214 TIGR00998 8a0101 efflux pump m 92.4 7.6 0.00016 39.8 16.4 18 163-180 146-163 (334)
215 PF04102 SlyX: SlyX; InterPro 92.4 0.63 1.4E-05 39.5 7.3 49 114-162 1-49 (69)
216 PF14073 Cep57_CLD: Centrosome 92.3 14 0.00031 37.4 20.6 149 90-267 5-166 (178)
217 PLN03188 kinesin-12 family pro 92.2 42 0.00091 42.5 27.0 190 78-330 1075-1268(1320)
218 KOG0804 Cytoplasmic Zn-finger 92.2 5.2 0.00011 45.4 15.8 74 89-162 347-420 (493)
219 PRK10361 DNA recombination pro 92.1 26 0.00056 40.1 22.9 119 130-273 59-179 (475)
220 PRK10476 multidrug resistance 92.1 6.5 0.00014 41.1 15.8 42 135-176 118-165 (346)
221 PF09755 DUF2046: Uncharacteri 92.0 21 0.00046 38.8 28.0 241 36-286 49-298 (310)
222 KOG2685 Cystoskeletal protein 92.0 25 0.00055 39.7 33.0 237 84-332 93-413 (421)
223 PF12325 TMF_TATA_bd: TATA ele 92.0 6.1 0.00013 37.3 13.9 82 206-287 33-117 (120)
224 PRK10246 exonuclease subunit S 91.8 39 0.00085 41.4 39.3 38 209-246 716-753 (1047)
225 KOG4302 Microtubule-associated 91.8 31 0.00068 40.9 22.1 30 301-330 293-332 (660)
226 COG4717 Uncharacterized conser 91.7 40 0.00086 41.4 25.9 70 230-300 735-808 (984)
227 PRK10884 SH3 domain-containing 91.7 2.6 5.6E-05 42.8 11.9 18 85-102 96-113 (206)
228 PF13870 DUF4201: Domain of un 91.7 13 0.00029 35.8 20.6 91 84-182 44-134 (177)
229 PF05276 SH3BP5: SH3 domain-bi 91.6 20 0.00042 37.6 21.8 71 231-304 149-229 (239)
230 PRK11519 tyrosine kinase; Prov 91.6 9 0.00019 44.7 17.7 31 261-291 365-395 (719)
231 KOG1265 Phospholipase C [Lipid 91.5 15 0.00032 45.0 19.3 72 34-111 1028-1100(1189)
232 PF09304 Cortex-I_coil: Cortex 91.3 5 0.00011 37.7 12.4 70 89-158 9-78 (107)
233 PRK10869 recombination and rep 91.3 22 0.00048 40.6 20.0 66 285-350 273-338 (553)
234 COG3883 Uncharacterized protei 91.3 23 0.0005 37.8 26.0 71 84-154 33-103 (265)
235 TIGR03319 YmdA_YtgF conserved 91.3 30 0.00065 39.5 20.9 94 101-194 67-160 (514)
236 PRK02119 hypothetical protein; 91.2 1.1 2.3E-05 38.9 7.5 51 112-162 4-54 (73)
237 TIGR01000 bacteriocin_acc bact 91.1 27 0.00059 38.4 23.6 17 308-324 298-314 (457)
238 PF07111 HCR: Alpha helical co 91.1 41 0.00088 40.3 37.4 89 36-124 177-277 (739)
239 KOG4807 F-actin binding protei 91.1 22 0.00049 40.2 19.0 24 139-162 292-315 (593)
240 TIGR03794 NHPM_micro_HlyD NHPM 91.0 25 0.00054 38.0 19.3 27 135-161 136-162 (421)
241 PF04111 APG6: Autophagy prote 91.0 4.8 0.0001 42.9 13.7 41 205-245 45-85 (314)
242 PRK10884 SH3 domain-containing 91.0 2.4 5.3E-05 43.0 11.0 22 88-109 92-113 (206)
243 PF10212 TTKRSYEDQ: Predicted 90.8 34 0.00073 39.6 20.6 97 186-285 413-513 (518)
244 PF10234 Cluap1: Clusterin-ass 90.8 20 0.00043 38.2 17.7 86 209-301 168-260 (267)
245 PRK00295 hypothetical protein; 90.8 1.1 2.4E-05 38.3 7.0 48 115-162 3-50 (68)
246 KOG3595 Dyneins, heavy chain [ 90.7 58 0.0013 41.4 31.1 111 204-318 904-1017(1395)
247 PF10473 CENP-F_leu_zip: Leuci 90.6 18 0.00038 35.3 18.3 62 211-279 67-128 (140)
248 COG1842 PspA Phage shock prote 90.6 23 0.0005 36.6 24.8 192 106-317 27-220 (225)
249 KOG4360 Uncharacterized coiled 90.5 8.9 0.00019 44.2 15.7 83 35-127 166-250 (596)
250 PRK02793 phi X174 lysis protei 90.4 1.3 2.8E-05 38.2 7.3 50 113-162 4-53 (72)
251 PF08826 DMPK_coil: DMPK coile 90.3 3.1 6.8E-05 35.4 9.3 45 207-251 15-59 (61)
252 KOG1103 Predicted coiled-coil 90.2 36 0.00078 38.2 22.0 140 119-277 120-263 (561)
253 KOG0239 Kinesin (KAR3 subfamil 90.2 30 0.00064 41.0 20.1 16 314-329 306-321 (670)
254 PRK00736 hypothetical protein; 90.1 1.2 2.6E-05 38.1 6.7 49 114-162 2-50 (68)
255 PF09789 DUF2353: Uncharacteri 90.0 33 0.00072 37.4 24.6 79 84-162 18-110 (319)
256 COG4026 Uncharacterized protei 90.0 6.8 0.00015 41.4 13.2 133 14-165 86-218 (290)
257 PF06717 DUF1202: Protein of u 89.9 8.6 0.00019 41.5 14.2 134 113-246 134-305 (308)
258 PF08581 Tup_N: Tup N-terminal 89.9 6 0.00013 35.1 11.1 75 171-277 1-75 (79)
259 PF15254 CCDC14: Coiled-coil d 89.8 19 0.00042 43.3 18.1 118 169-311 382-500 (861)
260 PRK04325 hypothetical protein; 89.7 1.5 3.3E-05 38.0 7.2 49 114-162 6-54 (74)
261 COG2433 Uncharacterized conser 89.7 4.3 9.3E-05 47.4 12.7 109 169-309 387-496 (652)
262 PLN02939 transferase, transfer 89.7 62 0.0013 40.1 27.5 47 282-330 409-457 (977)
263 PF06008 Laminin_I: Laminin Do 89.7 26 0.00057 35.9 31.9 67 188-254 141-208 (264)
264 PF05769 DUF837: Protein of un 89.6 7.1 0.00015 39.0 12.7 84 19-124 52-142 (181)
265 PF15066 CAGE1: Cancer-associa 89.6 45 0.00097 38.4 22.6 95 84-182 392-486 (527)
266 PF14197 Cep57_CLD_2: Centroso 89.6 4.4 9.4E-05 35.0 9.7 66 95-160 4-69 (69)
267 PF00769 ERM: Ezrin/radixin/mo 89.5 28 0.00061 36.1 17.3 66 232-297 27-92 (246)
268 PRK10361 DNA recombination pro 89.3 46 0.001 38.1 21.0 22 204-225 141-162 (475)
269 COG1842 PspA Phage shock prote 89.1 30 0.00065 35.8 21.7 35 128-162 89-123 (225)
270 PF15294 Leu_zip: Leucine zipp 89.0 36 0.00079 36.6 25.3 224 110-353 8-277 (278)
271 PF12325 TMF_TATA_bd: TATA ele 88.9 11 0.00023 35.7 12.7 49 106-154 64-112 (120)
272 PRK00409 recombination and DNA 88.8 8.8 0.00019 45.6 14.8 20 163-182 566-585 (782)
273 PF02050 FliJ: Flagellar FliJ 88.8 14 0.0003 31.5 14.2 61 255-315 48-108 (123)
274 PF13166 AAA_13: AAA domain 88.7 50 0.0011 37.8 27.1 14 353-366 520-534 (712)
275 PRK15178 Vi polysaccharide exp 88.6 27 0.00059 39.5 17.6 169 104-319 217-388 (434)
276 PRK00106 hypothetical protein; 88.6 54 0.0012 38.0 21.1 11 526-536 434-444 (535)
277 PF09730 BicD: Microtubule-ass 88.5 64 0.0014 38.8 37.8 113 35-152 34-149 (717)
278 KOG1937 Uncharacterized conser 88.0 57 0.0012 37.6 22.7 154 91-252 243-403 (521)
279 TIGR01010 BexC_CtrB_KpsE polys 88.0 40 0.00086 35.8 18.1 99 202-312 169-267 (362)
280 TIGR01069 mutS2 MutS2 family p 87.9 11 0.00024 44.8 14.8 48 108-155 502-549 (771)
281 PF05384 DegS: Sensor protein 87.8 31 0.00066 34.2 18.7 31 132-162 35-65 (159)
282 KOG0804 Cytoplasmic Zn-finger 87.4 18 0.00038 41.3 15.2 105 84-188 349-458 (493)
283 TIGR02977 phageshock_pspA phag 87.2 35 0.00077 34.4 25.1 118 111-246 32-149 (219)
284 KOG0239 Kinesin (KAR3 subfamil 87.2 20 0.00044 42.3 16.2 23 30-52 137-159 (670)
285 PF14915 CCDC144C: CCDC144C pr 87.1 50 0.0011 36.0 32.5 213 84-330 26-243 (305)
286 TIGR03752 conj_TIGR03752 integ 87.1 5.9 0.00013 45.0 11.5 77 85-161 62-139 (472)
287 PF06548 Kinesin-related: Kine 86.9 65 0.0014 37.0 26.6 189 55-303 290-482 (488)
288 PF10234 Cluap1: Clusterin-ass 86.8 13 0.00028 39.6 13.1 86 101-201 156-248 (267)
289 PF09789 DUF2353: Uncharacteri 86.8 18 0.0004 39.3 14.5 98 202-301 71-168 (319)
290 COG4026 Uncharacterized protei 86.5 10 0.00023 40.0 12.1 76 86-161 132-207 (290)
291 COG3096 MukB Uncharacterized p 86.4 91 0.002 38.3 30.9 37 281-317 645-681 (1480)
292 COG2433 Uncharacterized conser 86.4 11 0.00024 44.2 13.3 95 67-162 415-512 (652)
293 TIGR01541 tape_meas_lam_C phag 86.1 51 0.0011 35.8 17.4 49 236-290 95-143 (332)
294 PF10211 Ax_dynein_light: Axon 86.1 22 0.00047 35.5 13.7 89 65-155 97-187 (189)
295 COG3524 KpsE Capsule polysacch 86.0 34 0.00073 37.8 15.8 146 106-283 156-303 (372)
296 KOG1003 Actin filament-coating 86.0 46 0.001 34.5 22.3 97 59-160 7-103 (205)
297 smart00787 Spc7 Spc7 kinetocho 85.7 57 0.0012 35.2 25.2 35 267-301 226-260 (312)
298 PF06785 UPF0242: Uncharacteri 85.6 54 0.0012 36.6 17.2 33 126-158 87-119 (401)
299 PF10498 IFT57: Intra-flagella 85.6 32 0.0007 37.8 15.8 96 84-182 243-343 (359)
300 PF12795 MscS_porin: Mechanose 85.6 44 0.00095 33.9 24.6 48 113-160 81-128 (240)
301 PRK00846 hypothetical protein; 85.3 5.3 0.00011 35.5 8.0 52 111-162 7-58 (77)
302 KOG0517 Beta-spectrin [Cytoske 85.2 1.5E+02 0.0032 39.7 27.8 218 67-294 821-1061(2473)
303 PF15372 DUF4600: Domain of un 85.2 16 0.00035 35.4 11.8 85 186-273 5-104 (129)
304 PF13166 AAA_13: AAA domain 85.0 79 0.0017 36.3 25.6 37 212-248 419-455 (712)
305 PLN03188 kinesin-12 family pro 84.9 1.3E+02 0.0027 38.6 26.2 56 61-118 945-1001(1320)
306 KOG0964 Structural maintenance 84.8 1.2E+02 0.0025 38.1 33.6 29 133-161 260-288 (1200)
307 KOG4572 Predicted DNA-binding 84.8 1.1E+02 0.0024 37.8 24.0 227 29-277 951-1222(1424)
308 PF01486 K-box: K-box region; 84.4 9.5 0.00021 33.9 9.3 46 137-182 11-68 (100)
309 COG4913 Uncharacterized protei 84.3 1.1E+02 0.0024 37.4 20.6 203 84-298 618-823 (1104)
310 PF10498 IFT57: Intra-flagella 84.3 34 0.00074 37.6 15.2 154 84-277 193-346 (359)
311 PF02994 Transposase_22: L1 tr 84.0 2.8 6.2E-05 45.5 7.1 78 85-162 108-189 (370)
312 PF07798 DUF1640: Protein of u 84.0 45 0.00097 32.7 17.9 31 138-168 73-103 (177)
313 PF15290 Syntaphilin: Golgi-lo 84.0 35 0.00075 37.1 14.7 51 204-254 118-172 (305)
314 KOG0288 WD40 repeat protein Ti 83.9 31 0.00068 39.1 14.8 50 411-461 213-266 (459)
315 KOG0163 Myosin class VI heavy 83.8 44 0.00095 40.8 16.6 41 37-77 870-910 (1259)
316 PF15272 BBP1_C: Spindle pole 83.6 58 0.0012 33.6 17.5 101 166-269 36-149 (196)
317 KOG1655 Protein involved in va 83.5 61 0.0013 33.8 16.7 92 130-234 25-121 (218)
318 PRK09841 cryptic autophosphory 83.3 74 0.0016 37.4 18.4 30 233-262 365-394 (726)
319 PF11932 DUF3450: Protein of u 83.3 38 0.00082 34.6 14.3 115 202-339 41-156 (251)
320 KOG4809 Rab6 GTPase-interactin 83.3 1E+02 0.0023 36.3 26.7 28 252-279 535-562 (654)
321 PRK03598 putative efflux pump 83.2 39 0.00084 35.2 14.6 40 139-178 115-160 (331)
322 KOG4657 Uncharacterized conser 83.2 33 0.00071 36.3 13.8 97 59-155 18-117 (246)
323 PF04065 Not3: Not1 N-terminal 83.1 64 0.0014 33.8 18.7 171 100-296 5-210 (233)
324 PF07106 TBPIP: Tat binding pr 83.0 5 0.00011 38.5 7.6 63 208-275 70-132 (169)
325 PF10481 CENP-F_N: Cenp-F N-te 83.0 29 0.00062 37.6 13.6 45 229-280 86-130 (307)
326 CHL00118 atpG ATP synthase CF0 82.8 46 0.00099 31.8 14.4 33 99-131 56-88 (156)
327 PF05276 SH3BP5: SH3 domain-bi 82.6 68 0.0015 33.7 27.2 202 63-273 17-226 (239)
328 PF10481 CENP-F_N: Cenp-F N-te 82.6 27 0.00059 37.8 13.2 115 33-154 16-132 (307)
329 TIGR02231 conserved hypothetic 82.3 18 0.00038 40.5 12.5 41 208-248 69-109 (525)
330 PF13949 ALIX_LYPXL_bnd: ALIX 82.2 62 0.0013 33.0 27.0 46 92-137 80-125 (296)
331 KOG4302 Microtubule-associated 82.0 1.2E+02 0.0027 36.2 25.6 105 54-162 23-127 (660)
332 PF05615 THOC7: Tho complex su 81.7 36 0.00078 31.8 12.4 71 92-162 42-112 (139)
333 KOG1854 Mitochondrial inner me 81.7 1.2E+02 0.0027 36.1 27.7 35 241-282 426-460 (657)
334 TIGR03794 NHPM_micro_HlyD NHPM 81.5 85 0.0018 34.1 18.7 16 261-276 229-244 (421)
335 PF01442 Apolipoprotein: Apoli 81.4 43 0.00094 30.7 24.3 19 268-286 179-197 (202)
336 PRK10698 phage shock protein P 81.3 68 0.0015 32.9 23.2 47 84-130 33-79 (222)
337 KOG1899 LAR transmembrane tyro 81.2 1.3E+02 0.0029 36.1 19.3 157 138-328 132-297 (861)
338 TIGR02894 DNA_bind_RsfA transc 81.1 26 0.00055 35.2 11.7 42 258-306 117-158 (161)
339 PF00769 ERM: Ezrin/radixin/mo 81.0 74 0.0016 33.1 16.7 65 90-154 6-70 (246)
340 PF04582 Reo_sigmaC: Reovirus 80.8 2.6 5.6E-05 45.8 5.2 39 206-244 115-153 (326)
341 PF05266 DUF724: Protein of un 80.8 30 0.00064 35.0 12.3 29 130-158 123-151 (190)
342 PRK03947 prefoldin subunit alp 80.7 43 0.00094 31.2 12.6 27 135-161 91-117 (140)
343 KOG2751 Beclin-like protein [S 80.4 51 0.0011 37.6 14.9 128 98-236 145-272 (447)
344 PF09738 DUF2051: Double stran 80.3 38 0.00083 36.6 13.6 47 111-157 78-124 (302)
345 COG4717 Uncharacterized conser 80.3 1.6E+02 0.0035 36.5 25.4 37 209-245 773-809 (984)
346 PF12072 DUF3552: Domain of un 79.9 69 0.0015 32.0 18.7 147 40-198 40-197 (201)
347 PF06005 DUF904: Protein of un 79.8 18 0.0004 31.5 9.1 63 118-180 5-70 (72)
348 PF08647 BRE1: BRE1 E3 ubiquit 79.8 46 0.001 29.9 12.2 63 86-148 7-69 (96)
349 TIGR02894 DNA_bind_RsfA transc 79.6 41 0.00089 33.8 12.5 34 49-82 28-69 (161)
350 TIGR02971 heterocyst_DevB ABC 79.6 81 0.0017 32.6 17.6 22 261-282 181-202 (327)
351 KOG4787 Uncharacterized conser 79.3 1.5E+02 0.0032 35.5 22.3 195 40-254 279-517 (852)
352 PF15456 Uds1: Up-regulated Du 79.2 11 0.00024 35.8 8.2 90 138-240 22-111 (124)
353 PF05335 DUF745: Protein of un 79.0 53 0.0012 33.4 13.4 17 67-83 67-83 (188)
354 KOG0982 Centrosomal protein Nu 79.0 1.3E+02 0.0028 34.7 20.6 13 327-339 451-463 (502)
355 PRK10476 multidrug resistance 78.9 91 0.002 32.8 16.8 20 141-160 117-136 (346)
356 TIGR02977 phageshock_pspA phag 78.9 77 0.0017 32.0 26.0 41 90-130 39-79 (219)
357 PF10146 zf-C4H2: Zinc finger- 78.7 78 0.0017 33.0 14.8 45 116-160 59-103 (230)
358 KOG1937 Uncharacterized conser 78.7 1.4E+02 0.0029 34.7 28.2 79 199-279 399-515 (521)
359 cd07672 F-BAR_PSTPIP2 The F-BA 78.4 88 0.0019 32.4 19.5 90 225-315 119-215 (240)
360 smart00502 BBC B-Box C-termina 78.3 44 0.00096 28.9 14.3 28 221-248 76-103 (127)
361 cd08915 V_Alix_like Protein-in 77.9 1E+02 0.0022 32.8 25.4 194 91-299 128-338 (342)
362 PRK03947 prefoldin subunit alp 77.9 56 0.0012 30.5 12.4 33 191-223 18-50 (140)
363 PF12808 Mto2_bdg: Micro-tubul 77.9 8 0.00017 32.3 6.0 42 237-278 3-48 (52)
364 PRK09174 F0F1 ATP synthase sub 77.9 75 0.0016 32.2 14.1 50 79-131 70-119 (204)
365 PF13863 DUF4200: Domain of un 77.6 55 0.0012 29.6 14.4 16 139-154 15-30 (126)
366 PF10267 Tmemb_cc2: Predicted 77.4 75 0.0016 35.7 15.1 102 134-244 215-318 (395)
367 PF10146 zf-C4H2: Zinc finger- 76.8 66 0.0014 33.5 13.7 14 169-182 90-103 (230)
368 PF03915 AIP3: Actin interacti 76.7 29 0.00063 39.1 11.9 57 86-144 217-273 (424)
369 PF07889 DUF1664: Protein of u 76.5 51 0.0011 31.7 11.8 88 131-244 36-123 (126)
370 CHL00019 atpF ATP synthase CF0 76.4 81 0.0017 30.9 14.5 28 102-129 61-88 (184)
371 PF14992 TMCO5: TMCO5 family 76.3 73 0.0016 34.4 14.1 40 118-157 12-51 (280)
372 KOG2129 Uncharacterized conser 76.2 1.6E+02 0.0034 34.1 21.2 25 138-162 201-225 (552)
373 PF06548 Kinesin-related: Kine 76.0 1.6E+02 0.0034 34.1 20.6 118 35-162 282-409 (488)
374 PF14197 Cep57_CLD_2: Centroso 76.0 37 0.00081 29.4 9.8 27 125-151 41-67 (69)
375 TIGR03321 alt_F1F0_F0_B altern 76.0 86 0.0019 32.1 14.1 22 362-383 206-227 (246)
376 KOG3091 Nuclear pore complex, 75.9 1.6E+02 0.0036 34.2 18.1 98 84-182 311-426 (508)
377 PF05010 TACC: Transforming ac 75.7 1E+02 0.0022 31.8 25.9 36 89-124 23-58 (207)
378 PF12777 MT: Microtubule-bindi 75.7 1.2E+02 0.0026 32.6 21.3 76 84-162 17-99 (344)
379 KOG1265 Phospholipase C [Lipid 75.5 2.1E+02 0.0046 35.8 18.8 19 65-83 1031-1049(1189)
380 PF10046 BLOC1_2: Biogenesis o 75.5 21 0.00045 32.2 8.6 82 32-122 18-99 (99)
381 PRK11546 zraP zinc resistance 75.4 14 0.00031 36.1 8.1 67 80-167 52-118 (143)
382 PRK13460 F0F1 ATP synthase sub 75.3 83 0.0018 30.5 14.4 32 100-131 51-82 (173)
383 PRK13454 F0F1 ATP synthase sub 75.3 83 0.0018 31.1 13.4 37 96-132 62-98 (181)
384 PF14362 DUF4407: Domain of un 75.3 1.1E+02 0.0024 31.9 16.5 69 214-282 132-212 (301)
385 TIGR02231 conserved hypothetic 75.2 34 0.00074 38.3 12.0 18 534-551 348-365 (525)
386 PF07200 Mod_r: Modifier of ru 75.2 73 0.0016 29.9 12.7 20 89-108 69-88 (150)
387 TIGR03545 conserved hypothetic 75.0 23 0.00051 40.9 10.9 46 78-124 150-205 (555)
388 cd00632 Prefoldin_beta Prefold 74.8 44 0.00095 30.0 10.4 42 202-243 62-103 (105)
389 COG0497 RecN ATPase involved i 74.8 1.8E+02 0.0039 34.2 21.3 159 191-349 159-338 (557)
390 PF04880 NUDE_C: NUDE protein, 74.8 3.7 8.1E-05 40.8 4.0 46 226-275 2-47 (166)
391 PF13870 DUF4201: Domain of un 74.7 86 0.0019 30.4 21.2 86 225-310 85-175 (177)
392 PF02403 Seryl_tRNA_N: Seryl-t 74.6 27 0.00059 31.1 9.0 51 111-161 44-97 (108)
393 TIGR01069 mutS2 MutS2 family p 74.6 82 0.0018 37.8 15.4 30 133-162 499-528 (771)
394 PRK14472 F0F1 ATP synthase sub 74.4 88 0.0019 30.4 14.1 28 102-129 55-82 (175)
395 PF05266 DUF724: Protein of un 74.3 68 0.0015 32.5 12.7 73 86-158 107-179 (190)
396 PF05278 PEARLI-4: Arabidopsis 74.2 1E+02 0.0022 33.2 14.5 113 66-180 141-255 (269)
397 PF07106 TBPIP: Tat binding pr 74.1 41 0.00088 32.4 10.7 51 109-159 85-137 (169)
398 PF06120 Phage_HK97_TLTM: Tail 74.1 1.4E+02 0.003 32.6 20.0 14 339-352 230-243 (301)
399 cd07590 BAR_Bin3 The Bin/Amphi 73.8 1E+02 0.0022 32.0 14.0 24 35-58 18-41 (225)
400 PRK13454 F0F1 ATP synthase sub 73.5 98 0.0021 30.5 14.1 7 176-182 114-120 (181)
401 KOG4360 Uncharacterized coiled 73.3 2E+02 0.0043 34.0 19.4 95 202-303 239-352 (596)
402 PRK07352 F0F1 ATP synthase sub 73.2 93 0.002 30.2 16.3 32 99-130 53-84 (174)
403 PF15290 Syntaphilin: Golgi-lo 73.1 50 0.0011 36.0 11.9 52 90-162 90-141 (305)
404 KOG0962 DNA repair protein RAD 72.9 2.9E+02 0.0062 35.7 36.6 82 274-355 508-593 (1294)
405 PF03915 AIP3: Actin interacti 72.9 56 0.0012 36.9 12.9 130 144-287 150-281 (424)
406 PRK13729 conjugal transfer pil 72.9 13 0.00027 42.5 7.9 50 106-155 72-121 (475)
407 PF11180 DUF2968: Protein of u 72.6 1.2E+02 0.0027 31.3 14.3 29 219-247 156-184 (192)
408 PRK09174 F0F1 ATP synthase sub 72.6 1.2E+02 0.0025 30.9 18.1 9 94-102 78-86 (204)
409 KOG4403 Cell surface glycoprot 72.5 1.6E+02 0.0036 34.0 16.1 143 37-185 254-415 (575)
410 PRK15136 multidrug efflux syst 72.3 94 0.002 33.8 14.1 41 139-179 128-174 (390)
411 PF11932 DUF3450: Protein of u 72.2 1.2E+02 0.0026 31.0 15.7 44 86-129 46-89 (251)
412 PRK05759 F0F1 ATP synthase sub 71.9 88 0.0019 29.3 14.1 98 122-219 33-131 (156)
413 COG1382 GimC Prefoldin, chaper 71.9 68 0.0015 30.8 11.3 65 67-131 27-112 (119)
414 PF09738 DUF2051: Double stran 71.9 82 0.0018 34.2 13.3 152 169-347 79-244 (302)
415 PRK12705 hypothetical protein; 71.6 2E+02 0.0044 33.3 19.3 88 202-292 51-138 (508)
416 PRK06569 F0F1 ATP synthase sub 71.5 1.1E+02 0.0023 30.5 13.0 67 94-167 39-106 (155)
417 TIGR03545 conserved hypothetic 71.5 29 0.00063 40.1 10.6 19 19-37 60-82 (555)
418 PRK08475 F0F1 ATP synthase sub 71.4 1E+02 0.0023 30.0 13.1 35 97-131 54-88 (167)
419 PF03962 Mnd1: Mnd1 family; I 71.4 57 0.0012 32.7 11.3 24 132-155 104-127 (188)
420 KOG4809 Rab6 GTPase-interactin 71.3 2.3E+02 0.0049 33.8 31.1 230 77-348 324-565 (654)
421 PRK04406 hypothetical protein; 71.2 27 0.00058 30.6 8.0 50 219-275 6-55 (75)
422 KOG3091 Nuclear pore complex, 71.1 1.9E+02 0.0042 33.7 16.5 94 84-182 350-443 (508)
423 PRK07353 F0F1 ATP synthase sub 71.0 87 0.0019 28.9 14.1 36 96-131 36-71 (140)
424 PF08647 BRE1: BRE1 E3 ubiquit 70.9 80 0.0017 28.4 12.1 59 218-276 11-69 (96)
425 PF12777 MT: Microtubule-bindi 70.8 17 0.00037 38.9 8.1 66 84-149 216-281 (344)
426 PRK12705 hypothetical protein; 70.7 2.1E+02 0.0046 33.2 21.0 15 522-536 402-417 (508)
427 KOG1962 B-cell receptor-associ 70.6 46 0.001 34.7 10.7 54 86-139 155-208 (216)
428 KOG0288 WD40 repeat protein Ti 70.5 1.6E+02 0.0035 33.8 15.5 85 98-182 15-105 (459)
429 PF00901 Orbi_VP5: Orbivirus o 70.0 50 0.0011 38.2 11.7 90 235-325 88-177 (508)
430 PF14992 TMCO5: TMCO5 family 69.8 91 0.002 33.8 13.0 32 39-70 15-46 (280)
431 KOG1850 Myosin-like coiled-coi 69.7 1.9E+02 0.0042 32.4 37.5 207 112-365 111-324 (391)
432 PF03999 MAP65_ASE1: Microtubu 69.6 1.1E+02 0.0023 35.7 14.5 48 29-76 135-183 (619)
433 PRK06231 F0F1 ATP synthase sub 69.5 1.3E+02 0.0028 30.5 13.4 47 98-147 81-127 (205)
434 PF04582 Reo_sigmaC: Reovirus 69.5 8.7 0.00019 41.9 5.6 35 205-239 121-155 (326)
435 PF11180 DUF2968: Protein of u 69.4 1.2E+02 0.0027 31.3 13.2 78 97-182 106-183 (192)
436 PF06810 Phage_GP20: Phage min 69.3 55 0.0012 32.0 10.5 8 240-247 118-125 (155)
437 PRK15178 Vi polysaccharide exp 69.1 57 0.0012 37.0 11.9 78 84-161 244-337 (434)
438 TIGR02338 gimC_beta prefoldin, 68.9 70 0.0015 29.1 10.4 25 220-244 77-101 (110)
439 PF03962 Mnd1: Mnd1 family; I 68.9 71 0.0015 32.1 11.4 23 111-133 77-99 (188)
440 PRK14472 F0F1 ATP synthase sub 68.8 1.2E+02 0.0025 29.5 16.1 31 171-201 107-137 (175)
441 PF06810 Phage_GP20: Phage min 68.6 61 0.0013 31.7 10.6 62 214-286 17-78 (155)
442 PRK06568 F0F1 ATP synthase sub 68.4 1.3E+02 0.0028 29.8 13.0 40 95-134 34-73 (154)
443 KOG4642 Chaperone-dependent E3 68.0 29 0.00064 37.3 8.9 91 213-305 186-280 (284)
444 PF02994 Transposase_22: L1 tr 67.9 14 0.00031 40.2 6.9 39 68-106 41-79 (370)
445 KOG1962 B-cell receptor-associ 67.5 59 0.0013 33.9 10.8 41 122-162 149-189 (216)
446 PLN02939 transferase, transfer 67.4 3.3E+02 0.0072 34.2 28.0 113 218-330 251-380 (977)
447 PRK14475 F0F1 ATP synthase sub 67.4 1.2E+02 0.0027 29.2 14.4 38 94-131 39-76 (167)
448 KOG0244 Kinesin-like protein [ 67.2 3.3E+02 0.0071 34.0 26.5 244 40-291 472-747 (913)
449 PF08232 Striatin: Striatin fa 67.0 16 0.00036 34.7 6.3 44 211-254 26-69 (134)
450 PF14916 CCDC92: Coiled-coil d 67.0 14 0.0003 31.7 5.2 38 236-276 1-38 (60)
451 PF09969 DUF2203: Uncharacteri 66.9 37 0.0008 32.0 8.5 36 76-111 5-42 (120)
452 PF04871 Uso1_p115_C: Uso1 / p 66.8 1.2E+02 0.0027 29.0 13.5 31 213-243 80-110 (136)
453 PF14257 DUF4349: Domain of un 66.8 29 0.00062 35.4 8.4 69 214-287 122-190 (262)
454 PRK10636 putative ABC transpor 66.8 36 0.00078 39.3 10.1 68 219-287 558-626 (638)
455 PF05008 V-SNARE: Vesicle tran 66.7 27 0.0006 29.3 7.0 56 100-155 22-78 (79)
456 COG5283 Phage-related tail pro 66.7 3.7E+02 0.0081 34.5 27.8 97 63-159 32-141 (1213)
457 PF03999 MAP65_ASE1: Microtubu 66.6 5.4 0.00012 45.8 3.6 87 258-349 263-360 (619)
458 PF08703 PLC-beta_C: PLC-beta 66.6 1.6E+02 0.0034 30.2 19.8 117 77-201 44-164 (185)
459 cd00632 Prefoldin_beta Prefold 66.5 99 0.0021 27.8 11.1 16 68-83 21-36 (105)
460 PF05700 BCAS2: Breast carcino 66.4 68 0.0015 32.6 10.9 72 89-160 143-218 (221)
461 PF15035 Rootletin: Ciliary ro 66.2 1.5E+02 0.0033 29.8 16.9 139 105-271 18-178 (182)
462 KOG3215 Uncharacterized conser 65.9 1.8E+02 0.004 30.6 16.5 61 149-209 77-139 (222)
463 PRK09343 prefoldin subunit bet 65.5 79 0.0017 29.6 10.3 36 214-249 75-110 (121)
464 PF14362 DUF4407: Domain of un 65.4 1.8E+02 0.0039 30.4 16.4 38 266-303 218-255 (301)
465 PF08172 CASP_C: CASP C termin 65.0 44 0.00094 35.1 9.4 35 246-283 83-117 (248)
466 cd07653 F-BAR_CIP4-like The F- 64.8 1.6E+02 0.0035 29.6 21.7 19 56-74 65-83 (251)
467 PF06428 Sec2p: GDP/GTP exchan 64.7 38 0.00082 31.3 7.9 66 97-162 2-68 (100)
468 KOG2891 Surface glycoprotein [ 64.6 2.3E+02 0.005 31.4 17.2 64 137-201 294-358 (445)
469 cd07671 F-BAR_PSTPIP1 The F-BA 64.5 1.8E+02 0.004 30.2 25.8 89 227-315 120-214 (242)
470 PF10205 KLRAQ: Predicted coil 64.4 1.1E+02 0.0023 28.9 10.8 70 171-248 2-71 (102)
471 PRK14474 F0F1 ATP synthase sub 64.4 1.9E+02 0.004 30.2 15.2 105 115-219 27-132 (250)
472 PRK11578 macrolide transporter 64.2 71 0.0015 33.9 11.0 18 93-110 110-127 (370)
473 PRK13461 F0F1 ATP synthase sub 64.1 1.4E+02 0.0029 28.5 14.1 32 99-130 39-70 (159)
474 PF06156 DUF972: Protein of un 63.9 30 0.00065 32.2 7.2 49 111-159 9-57 (107)
475 TIGR00237 xseA exodeoxyribonuc 63.9 2.1E+02 0.0046 31.9 15.0 44 84-127 250-294 (432)
476 PF08581 Tup_N: Tup N-terminal 63.8 1.1E+02 0.0024 27.4 11.0 69 91-166 6-74 (79)
477 TIGR01541 tape_meas_lam_C phag 63.8 2.3E+02 0.0049 31.0 22.0 14 169-182 114-127 (332)
478 KOG2264 Exostosin EXT1L [Signa 63.8 45 0.00099 39.5 10.0 72 91-162 81-152 (907)
479 COG5281 Phage-related minor ta 63.8 3.6E+02 0.0079 33.4 29.1 91 185-283 457-569 (833)
480 PF04899 MbeD_MobD: MbeD/MobD 63.8 90 0.002 27.4 9.6 61 86-156 7-67 (70)
481 PF06818 Fez1: Fez1; InterPro 63.6 1.9E+02 0.0041 30.1 21.9 36 219-254 133-168 (202)
482 PRK13729 conjugal transfer pil 63.6 20 0.00044 40.9 7.2 17 259-275 104-120 (475)
483 PF15456 Uds1: Up-regulated Du 63.4 91 0.002 29.8 10.4 71 88-159 21-102 (124)
484 PRK00846 hypothetical protein; 63.3 56 0.0012 29.2 8.4 55 214-275 3-57 (77)
485 PF11802 CENP-K: Centromere-as 63.1 2.3E+02 0.0049 30.7 17.4 62 226-292 126-187 (268)
486 PRK13428 F0F1 ATP synthase sub 62.6 2.7E+02 0.0058 31.4 20.8 20 283-302 204-223 (445)
487 PF05103 DivIVA: DivIVA protei 62.5 11 0.00024 34.0 4.1 12 169-180 62-73 (131)
488 KOG0244 Kinesin-like protein [ 62.4 47 0.001 40.8 10.1 16 303-318 584-599 (913)
489 PF04880 NUDE_C: NUDE protein, 62.3 11 0.00023 37.7 4.2 25 118-142 1-25 (166)
490 COG1566 EmrA Multidrug resista 62.2 1.8E+02 0.0039 32.2 13.8 30 118-147 92-121 (352)
491 COG0711 AtpF F0F1-type ATP syn 62.1 1.6E+02 0.0035 28.7 16.9 25 167-191 80-104 (161)
492 KOG4603 TBP-1 interacting prot 62.1 54 0.0012 33.7 9.1 66 210-280 79-144 (201)
493 PF13863 DUF4200: Domain of un 61.8 1.2E+02 0.0027 27.3 13.7 97 142-243 4-107 (126)
494 cd07648 F-BAR_FCHO The F-BAR ( 61.8 1.9E+02 0.0042 29.5 20.6 167 53-228 57-233 (261)
495 PF15450 DUF4631: Domain of un 61.8 3.3E+02 0.007 32.1 30.3 229 53-298 157-430 (531)
496 PRK05759 F0F1 ATP synthase sub 61.6 1.4E+02 0.0031 27.9 15.5 118 112-229 30-156 (156)
497 KOG3540 Beta amyloid precursor 61.6 77 0.0017 36.9 11.1 101 37-150 298-424 (615)
498 TIGR03752 conj_TIGR03752 integ 61.6 63 0.0014 37.1 10.5 73 212-287 61-133 (472)
499 PF04899 MbeD_MobD: MbeD/MobD 61.3 86 0.0019 27.5 9.1 60 169-236 5-68 (70)
500 PF05262 Borrelia_P83: Borreli 61.1 3.2E+02 0.0069 31.8 16.9 143 119-281 200-347 (489)
No 1
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=100.00 E-value=6e-46 Score=401.96 Aligned_cols=262 Identities=19% Similarity=0.240 Sum_probs=255.5
Q ss_pred hhhhhhhhhhhhHHHHHhhhhhhhhhccchhhHHHHHhhHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHH
Q 005601 34 LDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESV-------------SISYLHQLKVLRDMLDA 100 (688)
Q Consensus 34 lDRVR~LE~ENsrLr~QIe~~eeti~tltrEvs~IK~~YEsEL~DARklL-------------~kk~~~EleELk~~L~k 100 (688)
.||||+||++|.+|..+|...+.++ .+++++||.+||.||..||++| ++++|+|+++|++++.+
T Consensus 55 IekVR~LEaqN~~L~~di~~lr~~~---~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~ 131 (546)
T KOG0977|consen 55 IEKVRFLEAQNRKLEHDINLLRGVV---GRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEK 131 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc---cCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5899999999999999999999999 9999999999999999999999 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh------hhhhch------
Q 005601 101 KQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR------VDRENA------ 168 (688)
Q Consensus 101 KeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE------VDlEN~------ 168 (688)
+++.+..+...+.++.+.++.|+++++.+++.++.++++++.+++++.+|..+|..+|++|. +|++|+
T Consensus 132 ~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lle 211 (546)
T KOG0977|consen 132 AEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLE 211 (546)
T ss_pred HHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988 788887
Q ss_pred --------------------------------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHH---------------
Q 005601 169 --------------------------------EADLKAAVQKSQLETQEKLKRLSDAASRRELEQ--------------- 201 (688)
Q Consensus 169 --------------------------------EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE--------------- 201 (688)
.++|++||++||+| ||+++++||++
T Consensus 212 el~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaq--------ye~~~~~nR~diE~~Y~~kI~~i~~~ 283 (546)
T KOG0977|consen 212 ELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQ--------YEAISRQNRKDIESWYKRKIQEIRTS 283 (546)
T ss_pred HHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHH--------HHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 89999999999999 99999999997
Q ss_pred ----HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005601 202 ----QEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELES 277 (688)
Q Consensus 202 ----~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~ 277 (688)
...+++++||++.+|++|.+|++||++|+.+|.+|+++|++|+.||..++..| ...|+.++.+|++||++|++
T Consensus 284 ~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~---e~~L~~kd~~i~~mReec~~ 360 (546)
T KOG0977|consen 284 AERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSF---EQALNDKDAEIAKMREECQQ 360 (546)
T ss_pred hccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhh---hhhhhhHHHHHHHHHHHHHH
Confidence 45566788999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHhHHHHHhhhHHHHHH
Q 005601 278 EKAAREVAWAKVSGLELDILAATRDLDFERRR 309 (688)
Q Consensus 278 QL~EYQdLmDiKvaLDlEIaAYrKLLEgEE~R 309 (688)
++.|||.|||+|++||+||++|||||+|||.|
T Consensus 361 l~~Elq~LlD~ki~Ld~EI~~YRkLLegee~r 392 (546)
T KOG0977|consen 361 LSVELQKLLDTKISLDAEIAAYRKLLEGEEER 392 (546)
T ss_pred HHHHHHHhhchHhHHHhHHHHHHHHhccccCC
Confidence 99999999999999999999999999999998
No 2
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=100.00 E-value=7.7e-35 Score=289.87 Aligned_cols=262 Identities=21% Similarity=0.295 Sum_probs=216.5
Q ss_pred hhhhhhhhhhhhHHHHHhhhhhhhhhccchhhHHHHHhhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 34 LDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESV------SISYLHQLKVLRDMLDAKQKELAE 107 (688)
Q Consensus 34 lDRVR~LE~ENsrLr~QIe~~eeti~tltrEvs~IK~~YEsEL~DARklL------~kk~~~EleELk~~L~kKeKEL~~ 107 (688)
++|||+||.+|.+|..+|..+...+ ..+++.++.+|+.||.++|+.| -.++..+.+.|+..++.....+..
T Consensus 17 IekVr~LE~~N~~Le~~i~~~~~~~---~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~ 93 (312)
T PF00038_consen 17 IEKVRFLEQENKRLESEIEELREKK---GEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEE 93 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHhcc---cccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHH
Confidence 7999999999999999999999998 8999999999999999999999 334444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh--------hhhh-chHHHHHHHHHH
Q 005601 108 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR--------VDRE-NAEADLKAAVQK 178 (688)
Q Consensus 108 ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE--------VDlE-N~EakLqqALqe 178 (688)
.......++..++.|-..+..+...+..++..+..++.+|.-|+..++..-..|. ++.. ....+|..+|.+
T Consensus 94 e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~e 173 (312)
T PF00038_consen 94 ELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALRE 173 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhh
Confidence 4566667777778888888888999999999999999999999998887766666 2222 227889999999
Q ss_pred HHHHHHHHhhhhhHHHHHHhHHH-------------------HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHH
Q 005601 179 SQLETQEKLKRLSDAASRRELEQ-------------------QEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNK 239 (688)
Q Consensus 179 LR~Qa~ee~kr~~Daq~r~nReE-------------------~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~R 239 (688)
||.+ |+..+..+|.+ ...+..+++|++.+|..|.+|+.+|..++.++..|+.+
T Consensus 174 iR~~--------ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~ 245 (312)
T PF00038_consen 174 IRAQ--------YEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQ 245 (312)
T ss_dssp HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH--------HHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhh
Confidence 9999 99999999988 66788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhhHHHHHH
Q 005601 240 VRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRR 309 (688)
Q Consensus 240 IReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYrKLLEgEE~R 309 (688)
|++||..+..++..+ ...+..++.+|..||.+|+.++.+|++||++|++||+||++|||||+|||.|
T Consensus 246 l~~le~~~~~~~~~~---~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~LLEgEE~R 312 (312)
T PF00038_consen 246 LRELEQRLDEEREEY---QAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRKLLEGEESR 312 (312)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHC--
T ss_pred HHHHHHHHHHHHHHH---HHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCcccC
Confidence 999999999999999 9999999999999999999999999999999999999999999999999987
No 3
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.10 E-value=5.4e-07 Score=110.99 Aligned_cols=240 Identities=18% Similarity=0.230 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhH--------------HHHHHHHhhHHHHHhh
Q 005601 95 RDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQK--------------VTIDELKTQLDEERNL 160 (688)
Q Consensus 95 k~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelk--------------aei~eLe~qLee~Rkq 160 (688)
-..+.|...+...++..+..++-.+..++..++.....++.+++.+.++. +...+|+.+|+++...
T Consensus 949 E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~ 1028 (1930)
T KOG0161|consen 949 ELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVT 1028 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444445555555555555555555555555555555544444444 4444444444444444
Q ss_pred hh------hhhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHH-HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHh
Q 005601 161 RR------VDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQ-QEVINKLQIAEKQSSLQVESLKLKLDETRERL 233 (688)
Q Consensus 161 LE------VDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE-~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n 233 (688)
|+ -++|.+.-+|-..|..++.. ..-+...+++ .+...+...++..+.++++.+..-+..+++..
T Consensus 1029 le~e~~~r~e~Ek~~rkle~el~~~~e~---------~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i 1099 (1930)
T KOG0161|consen 1029 LEREKRIRMELEKAKRKLEGELKDLQES---------IEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQI 1099 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 43 33333333444444333333 1112223333 67777788888999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhhHHHHHHhhHh
Q 005601 234 VTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAA 313 (688)
Q Consensus 234 ~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYrKLLEgEE~RLkga 313 (688)
.-+..+|.+|+..|..||..-+-..+....|..++..|+.+|+.++..-.-...+....+.||.-.++.|+-|
T Consensus 1100 ~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee------- 1172 (1930)
T KOG0161|consen 1100 KELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEE------- 1172 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 9999999999999999999998899999999999999999999999999999999999999999999999866
Q ss_pred HhhHHHhhhhhhHhhccHHHHHHHHHHHHHHHHHHHhhhc
Q 005601 314 RERIMLRETQLRAFYSTTEEISVLFARQQEQLKAMQKTLE 353 (688)
Q Consensus 314 reri~lretqlrafystteeis~lfakqqeqlkaMQrTLe 353 (688)
.+-.|+|+-++=-+......-..-|-+||+-.-..|+
T Consensus 1173 ---~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~le 1209 (1930)
T KOG0161|consen 1173 ---TLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLE 1209 (1930)
T ss_pred ---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566555555555555555556666654444443
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.09 E-value=4.2e-06 Score=95.82 Aligned_cols=38 Identities=11% Similarity=0.141 Sum_probs=15.1
Q ss_pred hHhhHHHhhhhhhHhhccHHHHHHHHHHHHHHHHHHHh
Q 005601 313 ARERIMLRETQLRAFYSTTEEISVLFARQQEQLKAMQK 350 (688)
Q Consensus 313 areri~lretqlrafystteeis~lfakqqeqlkaMQr 350 (688)
..+++--.+.++...-+...++...+.+.+.+++.++.
T Consensus 460 ~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~l~~ 497 (1164)
T TIGR02169 460 LAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEA 497 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334443333333443334444444444443
No 5
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.05 E-value=2.2e-06 Score=97.39 Aligned_cols=15 Identities=13% Similarity=-0.022 Sum_probs=6.4
Q ss_pred CCCCCCCCCCCCCCC
Q 005601 546 APSVHGENESPRSRD 560 (688)
Q Consensus 546 ~psvhgenesp~s~~ 560 (688)
.|.+.==.|+...+|
T Consensus 1111 ~~~~~~lDE~~~~ld 1125 (1179)
T TIGR02168 1111 PAPFCILDEVDAPLD 1125 (1179)
T ss_pred CCCeEEecCcccccc
Confidence 334444444444444
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.99 E-value=1.2e-05 Score=92.29 Aligned_cols=30 Identities=13% Similarity=0.126 Sum_probs=11.6
Q ss_pred HHHhhhHhHHHHHhhhHHHHHHhhHhHhhH
Q 005601 288 KVSGLELDILAATRDLDFERRRLKAARERI 317 (688)
Q Consensus 288 iKvaLDlEIaAYrKLLEgEE~RLkgareri 317 (688)
-.-.+.-+|..+.+-++.-+.++..++..+
T Consensus 442 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l 471 (1164)
T TIGR02169 442 EKEDKALEIKKQEWKLEQLAADLSKYEQEL 471 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444333333433333333
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.96 E-value=5.5e-06 Score=94.22 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=11.9
Q ss_pred HHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHH
Q 005601 212 EKQSSLQVESLKLKLDETRERLVTSDNKVRLL 243 (688)
Q Consensus 212 lke~R~RVEsL~sKL~dLe~~n~ale~RIReL 243 (688)
+..+..++..|..++..++.++..+..++..+
T Consensus 819 l~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~ 850 (1179)
T TIGR02168 819 AANLRERLESLERRIAATERRLEDLEEQIEEL 850 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 8
>PRK02224 chromosome segregation protein; Provisional
Probab=98.95 E-value=1.8e-05 Score=90.24 Aligned_cols=112 Identities=20% Similarity=0.163 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 205 INKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREV 284 (688)
Q Consensus 205 a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQd 284 (688)
+....+.+.....+++.|..++.+|+..+..+..+.++|+..+............++..++.++.+|. ++..-..++++
T Consensus 525 ~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le-~~~~~~~~i~~ 603 (880)
T PRK02224 525 IAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAAIAD 603 (880)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 44445555556666666777777777777777776777777777766666667777777777777777 46666666666
Q ss_pred HHHHHHhhhHhHHHHHhhhHHHHHHhhHhHhhH
Q 005601 285 AWAKVSGLELDILAATRDLDFERRRLKAARERI 317 (688)
Q Consensus 285 LmDiKvaLDlEIaAYrKLLEgEE~RLkgareri 317 (688)
+-+-+-.|.-++..+.+..+.-..||...|.||
T Consensus 604 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i 636 (880)
T PRK02224 604 AEDEIERLREKREALAELNDERRERLAEKRERK 636 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666555556666666665
No 9
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.92 E-value=5.1e-06 Score=92.67 Aligned_cols=167 Identities=20% Similarity=0.256 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh-------------hhhhchHHHHHHHHHHHHHHHHHHh
Q 005601 121 DLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR-------------VDRENAEADLKAAVQKSQLETQEKL 187 (688)
Q Consensus 121 dLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE-------------VDlEN~EakLqqALqeLR~Qa~ee~ 187 (688)
+|..+|......++........+.+++..|+.+|..++.++. -++-+...+..+-||..|-|+..=-
T Consensus 259 eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~ 338 (546)
T PF07888_consen 259 ELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLK 338 (546)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 333444444444444444444555555666666666655555 1222225566666777777744444
Q ss_pred hhhhHHHHH--HhHHH-HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 005601 188 KRLSDAASR--RELEQ-QEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEEL 264 (688)
Q Consensus 188 kr~~Daq~r--~nReE-~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~l 264 (688)
+++.++.+. ..+.+ ......++......+.+|..|...+..+...+----.-..-|+.+|..+++.. +-.+.+.
T Consensus 339 ~qLad~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n---~vqlsE~ 415 (546)
T PF07888_consen 339 LQLADASLELKEGRSQWAQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCN---RVQLSEN 415 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---HHHHHHH
Confidence 455555432 22222 33444555555556677777777777777766666666677888888888777 5455555
Q ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 005601 265 ENEIKKLR-------EELESEKAAREVAWAKVS 290 (688)
Q Consensus 265 E~Ei~rLR-------~EMe~QL~EYQdLmDiKv 290 (688)
.++|.+|+ +|=++...|.|+||+-.-
T Consensus 416 ~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~ 448 (546)
T PF07888_consen 416 RRELQELKSSLRVAQKEKEQLQEEKQELLEYIE 448 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555544 455566677777776433
No 10
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.86 E-value=3.4e-05 Score=95.78 Aligned_cols=239 Identities=21% Similarity=0.266 Sum_probs=162.5
Q ss_pred HHHhhHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005601 68 VVERHEKEMKEMKESV-------------SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCT 134 (688)
Q Consensus 68 IK~~YEsEL~DARklL-------------~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk 134 (688)
.+--++++|++++..+ +++...|+-.|+.+++..+..+..+++.+.++++++.+|.+.|..-...+.
T Consensus 1042 ~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~ 1121 (1930)
T KOG0161|consen 1042 AKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRA 1121 (1930)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666655555 677778888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHhhHHHH----Hhhhh-------------hhhhch-----------HHHHHHHHHHHHHHHHH-
Q 005601 135 EANEIMKSQKVTIDELKTQLDEE----RNLRR-------------VDRENA-----------EADLKAAVQKSQLETQE- 185 (688)
Q Consensus 135 ~aeeelkelkaei~eLe~qLee~----RkqLE-------------VDlEN~-----------EakLqqALqeLR~Qa~e- 185 (688)
+++....++..++..|+.+|++. ..+++ .+++.. ..+.+.+|.++..|...
T Consensus 1122 K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l 1201 (1930)
T KOG0161|consen 1122 KAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQL 1201 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888776 11111 222222 12222223333322111
Q ss_pred ------------------------------------HhhhhhHHHHHHhHHH-----------HHHHHHHHHHHHHHhHH
Q 005601 186 ------------------------------------KLKRLSDAASRRELEQ-----------QEVINKLQIAEKQSSLQ 218 (688)
Q Consensus 186 ------------------------------------e~kr~~Daq~r~nReE-----------~~~a~kaqEElke~R~R 218 (688)
-.-+.|++++...+.. ....++++.|.-+.-.+
T Consensus 1202 ~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~ 1281 (1930)
T KOG0161|consen 1202 QKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQ 1281 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhH
Confidence 0111222222221111 11244455555555555
Q ss_pred HHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHH
Q 005601 219 VESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILA 298 (688)
Q Consensus 219 VEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaA 298 (688)
++....+++.+.....++..+|.+|=.||+.|-.........+..++.+...||++|+-......+|+-..+.+-.++++
T Consensus 1282 lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~ 1361 (1930)
T KOG0161|consen 1282 LEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQ 1361 (1930)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666677777777777777666667777888888888888888888888888888888888888888
Q ss_pred HHhhhHHH
Q 005601 299 ATRDLDFE 306 (688)
Q Consensus 299 YrKLLEgE 306 (688)
.++-.+.+
T Consensus 1362 ~~~k~e~~ 1369 (1930)
T KOG0161|consen 1362 WKKKFEEE 1369 (1930)
T ss_pred HHHHHHHH
Confidence 88876654
No 11
>PRK02224 chromosome segregation protein; Provisional
Probab=98.83 E-value=3e-05 Score=88.41 Aligned_cols=12 Identities=33% Similarity=0.601 Sum_probs=4.7
Q ss_pred hHHHHHHHHHHH
Q 005601 72 HEKEMKEMKESV 83 (688)
Q Consensus 72 YEsEL~DARklL 83 (688)
.+.++.+++..+
T Consensus 211 ~~~~l~el~~~i 222 (880)
T PRK02224 211 LESELAELDEEI 222 (880)
T ss_pred HHHHHHHHHHHH
Confidence 333444443333
No 12
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.71 E-value=0.00021 Score=85.26 Aligned_cols=98 Identities=23% Similarity=0.335 Sum_probs=58.0
Q ss_pred HHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 207 KLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAW 286 (688)
Q Consensus 207 kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLm 286 (688)
.+.+.+..++..+..+..++..+..++..+.+.+..|+.-+..-+..-....+.+..++.++.+++.+++.+...+..+.
T Consensus 839 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 918 (1163)
T COG1196 839 ELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELE 918 (1163)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555666666666666666666666665555555555566666666666666666666666666665
Q ss_pred HHHHhhhHhHHHHHhhhH
Q 005601 287 AKVSGLELDILAATRDLD 304 (688)
Q Consensus 287 DiKvaLDlEIaAYrKLLE 304 (688)
...-.|..++......+.
T Consensus 919 ~~~~~~~~~~~~~~~~~~ 936 (1163)
T COG1196 919 AKLERLEVELPELEEELE 936 (1163)
T ss_pred HHHHHHHHHHHHHHhhhc
Confidence 555566665555444443
No 13
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.67 E-value=0.00022 Score=85.08 Aligned_cols=112 Identities=22% Similarity=0.281 Sum_probs=47.9
Q ss_pred hhhHHHHHhhhhhhhhhccchhhHHHHHh--hHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 43 SNTELRKQLESQVLEIDKLRNENRVVVER--HEKEMKEMKESV-----------SISYLHQLKVLRDMLDAKQKELAEIS 109 (688)
Q Consensus 43 ENsrLr~QIe~~eeti~tltrEvs~IK~~--YEsEL~DARklL-----------~kk~~~EleELk~~L~kKeKEL~~ae 109 (688)
.-.++..-+.+....++.|.++...+... ...++..++..+ +..+..++..++..++.....+..+.
T Consensus 187 nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 266 (1163)
T COG1196 187 NLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAE 266 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444455556666555432 223455554444 33333333334444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhH
Q 005601 110 RISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQL 154 (688)
Q Consensus 110 ~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qL 154 (688)
..+..++..++++..++......-..+...+.++..++..++..+
T Consensus 267 ~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~ 311 (1163)
T COG1196 267 KEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERL 311 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443332333333333333333333333
No 14
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.66 E-value=0.00014 Score=73.61 Aligned_cols=253 Identities=26% Similarity=0.318 Sum_probs=140.0
Q ss_pred HHHHhhhhhhhhhccchhhHHHHHhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 47 LRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKES-------VSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEM 119 (688)
Q Consensus 47 Lr~QIe~~eeti~tltrEvs~IK~~YEsEL~DARkl-------L~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~i 119 (688)
|.-++-.+.+.|-.|-.+... -+.+|..++.. +-..|..++.+|+..++...++...++-.+..+...+
T Consensus 9 LNdRla~YIekVr~LE~~N~~----Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~ 84 (312)
T PF00038_consen 9 LNDRLASYIEKVRFLEQENKR----LESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEEL 84 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHH
Confidence 333344445555233333333 34555555554 3677999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhH
Q 005601 120 EDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRREL 199 (688)
Q Consensus 120 ndLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nR 199 (688)
.++..+|....+.+..++.++..+++.++..... .+++++.-..|+.-|.-++.. |++.++..|
T Consensus 85 ~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~--------r~~le~~i~~L~eEl~fl~~~--------heeEi~~L~ 148 (312)
T PF00038_consen 85 EDLRRKYEEELAERKDLEEELESLRKDLDEETLA--------RVDLENQIQSLKEELEFLKQN--------HEEEIEELR 148 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh--------HhHHHHHHHHHHHHHHHHHhh--------hhhhhhhhh
Confidence 9999999999999988888888888655543322 245555544555555555554 555555554
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHH-HHHH----HHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 005601 200 EQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVR-LLET----QVCKEQNVSASWKKRVEELENEIKKLREE 274 (688)
Q Consensus 200 eE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIR-eLE~----qL~~Er~~s~~~~k~l~~lE~Ei~rLR~E 274 (688)
.+.. ...--+++. ..--.|...|.+++.+....-.+.+ ++|. ++..-+.........+.....|++++|..
T Consensus 149 ~~~~--~~~~~e~~~--~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~ 224 (312)
T PF00038_consen 149 EQIQ--SSVTVEVDQ--FRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQ 224 (312)
T ss_dssp TT--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccc--cccceeecc--cccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhh
Confidence 4321 000011111 1111233333333333322222222 2221 11222222222244555666666777777
Q ss_pred HHHHHHHHHHHHHHHHhhhHhHHHHHhhhHHHHHHhhHhHhhHHHhhhhhhH
Q 005601 275 LESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARERIMLRETQLRA 326 (688)
Q Consensus 275 Me~QL~EYQdLmDiKvaLDlEIaAYrKLLEgEE~RLkgareri~lretqlra 326 (688)
++.--.+...|-..+.+|.-.|.....-+..+..-++ ..|--+|.+|..
T Consensus 225 ~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~---~~i~~le~el~~ 273 (312)
T PF00038_consen 225 IQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQ---AEIAELEEELAE 273 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred hhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHH---HhhhccchhHHH
Confidence 6666666667777777777777766666665533333 335555555543
No 15
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.65 E-value=0.00032 Score=84.65 Aligned_cols=28 Identities=7% Similarity=0.090 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccc
Q 005601 332 EEISVLFARQQEQLKAMQKTLEDEENYE 359 (688)
Q Consensus 332 eeis~lfakqqeqlkaMQrTLeDeeNye 359 (688)
..+..=|-++.=++++......|=+.|-
T Consensus 1097 k~a~~ryrka~i~~~~~~~~~~d~~~~~ 1124 (1311)
T TIGR00606 1097 RDAEEKYREMMIVMRTTELVNKDLDIYY 1124 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555556666666666666653
No 16
>PRK03918 chromosome segregation protein; Provisional
Probab=98.62 E-value=0.00071 Score=77.11 Aligned_cols=38 Identities=8% Similarity=0.157 Sum_probs=21.8
Q ss_pred HHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHH
Q 005601 210 IAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQV 247 (688)
Q Consensus 210 EElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL 247 (688)
..+.++....+.++.++..++.....+..++.+|+..+
T Consensus 391 ~~l~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l 428 (880)
T PRK03918 391 KELEELEKAKEEIEEEISKITARIGELKKEIKELKKAI 428 (880)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555566666666666666666666666554
No 17
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.61 E-value=1.6e-05 Score=85.72 Aligned_cols=238 Identities=13% Similarity=0.122 Sum_probs=119.8
Q ss_pred ccccccCCCCCCcchhhhhhhhhhhhHHHHHhhhhhhhhhccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 20 LKGIGICSPDGPLSLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLD 99 (688)
Q Consensus 20 ~kglgig~~~gpislDRVR~LE~ENsrLr~QIe~~eeti~tltrEvs~IK~~YEsEL~DARklL~kk~~~EleELk~~L~ 99 (688)
+-|+++=..-|-+.-+++|.++.+...|..++......++++.+-+..++..+... +..+..++++|...+.
T Consensus 159 l~~~~~~~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~--------i~~l~~e~~~l~~~~~ 230 (562)
T PHA02562 159 LLDISVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGEN--------IARKQNKYDELVEEAK 230 (562)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 33444433334455677777777777777777776666644444444444433221 4455555566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHh--hHHHHHhhhhhhhhchHHHHHHHHH
Q 005601 100 AKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKT--QLDEERNLRRVDRENAEADLKAAVQ 177 (688)
Q Consensus 100 kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~--qLee~RkqLEVDlEN~EakLqqALq 177 (688)
..+.++..++..+..+...+.++.+.|+.+...+..++..+..+.+.+.-++. .+..+...+.-. ++.-..|..-+.
T Consensus 231 ~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~-~~~~~~l~d~i~ 309 (562)
T PHA02562 231 TIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEG-PDRITKIKDKLK 309 (562)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCc-HHHHHHHHHHHH
Confidence 66666666666665655555555555554444444444444444444443321 111112222111 223333333333
Q ss_pred HHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHH
Q 005601 178 KSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASW 257 (688)
Q Consensus 178 eLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~ 257 (688)
.|+.| ++.+ +..+....+.......++..+.+.+..+..++..|..+..++..++..|..||..... .
T Consensus 310 ~l~~~----l~~l-~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~-------~ 377 (562)
T PHA02562 310 ELQHS----LEKL-DTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVD-------N 377 (562)
T ss_pred HHHHH----HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-------h
Confidence 33333 3332 2222222222233555566666666666666666666666666666666666665221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005601 258 KKRVEELENEIKKLREELESE 278 (688)
Q Consensus 258 ~k~l~~lE~Ei~rLR~EMe~Q 278 (688)
...+..++.++..++.++..-
T Consensus 378 ~~~l~~l~~~l~~~~~~~~~~ 398 (562)
T PHA02562 378 AEELAKLQDELDKIVKTKSEL 398 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554443
No 18
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.58 E-value=9.9e-09 Score=118.41 Aligned_cols=292 Identities=20% Similarity=0.286 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhHHHHHhhhhhhhh-------hccchhhHHHHHhhHH-------HHHHHHHHH-----------------
Q 005601 35 DDFRSLQRSNTELRKQLESQVLEI-------DKLRNENRVVVERHEK-------EMKEMKESV----------------- 83 (688)
Q Consensus 35 DRVR~LE~ENsrLr~QIe~~eeti-------~tltrEvs~IK~~YEs-------EL~DARklL----------------- 83 (688)
..||.|+.++..|+.++..-.... .++..|+..++..|+. +|.++|+-|
T Consensus 264 ~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~ 343 (859)
T PF01576_consen 264 KQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAK 343 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999998655433 3456788888889988 466677766
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHH
Q 005601 84 -------SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 156 (688)
Q Consensus 84 -------~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee 156 (688)
-+|+..|+++|+..|++.......+++..+.+...+.++..++......+..+..+...+..++..|+.+|++
T Consensus 344 ~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee 423 (859)
T PF01576_consen 344 VSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEE 423 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHH
Confidence 3445555555555555555555555555555556666665555555555555555555555555555555555
Q ss_pred HHhhhh-hhhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhh
Q 005601 157 ERNLRR-VDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVT 235 (688)
Q Consensus 157 ~RkqLE-VDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~a 235 (688)
++-+++ +.++| -.|+.-|++|-.+ .+ +-...++.+.-..+.+-..++.|...|.+++..+..
T Consensus 424 ~~e~~e~lere~--k~L~~El~dl~~q--------~~-------~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~ 486 (859)
T PF01576_consen 424 LQEQLEELEREN--KQLQDELEDLTSQ--------LD-------DAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEA 486 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHH--HHHHHhhccchhh--------hh-------hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554 33333 2334444444333 11 113334556666677777888999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhhHHHHHHhhHhHh
Q 005601 236 SDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARE 315 (688)
Q Consensus 236 le~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYrKLLEgEE~RLkgare 315 (688)
.+.++..|+-.|...|..| .+.+..++.|+-.+|.-++.++...+.-|+-=.-.=.++..-+|-|+++ |+.
T Consensus 487 ~E~~~lRl~~el~~~r~e~---er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~---l~e--- 557 (859)
T PF01576_consen 487 EEQKKLRLQVELQQLRQEI---ERELQEKEEEFEETRRNHQRQLESLEAELEEERKERAEALREKKKLESD---LNE--- 557 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHH---
Confidence 9999999999999999999 9999999999999998888887766554433222222333444445444 222
Q ss_pred hHHHhhhhhhHhhccHHHHHHHHHHHHHHHHHHHhhhcccc
Q 005601 316 RIMLRETQLRAFYSTTEEISVLFARQQEQLKAMQKTLEDEE 356 (688)
Q Consensus 316 ri~lretqlrafystteeis~lfakqqeqlkaMQrTLeDee 356 (688)
=|.||-+-....++....+.|-|.|||.||+.|+|.-
T Consensus 558 ----Le~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~ 594 (859)
T PF01576_consen 558 ----LEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQ 594 (859)
T ss_dssp -----------------------------------------
T ss_pred ----HHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 2567777777788888888999999999999998854
No 19
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.52 E-value=0.00038 Score=84.06 Aligned_cols=56 Identities=23% Similarity=0.351 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhhHHHHHHhhHhHhhH
Q 005601 260 RVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARERI 317 (688)
Q Consensus 260 ~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYrKLLEgEE~RLkgareri 317 (688)
....+..+..+|+.++..--..+-.++.-+-.|+-.|.++.+.|+. .-++.|.+|.
T Consensus 1048 ~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e--~~yk~a~~ry 1103 (1311)
T TIGR00606 1048 QVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE--PQFRDAEEKY 1103 (1311)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--hHHHHHHHHH
Confidence 3456667777777777777778888999999999999999999965 5577777764
No 20
>PRK03918 chromosome segregation protein; Provisional
Probab=98.50 E-value=0.0041 Score=71.09 Aligned_cols=37 Identities=19% Similarity=0.346 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 92 KVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSA 128 (688)
Q Consensus 92 eELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsa 128 (688)
++|....+.+...+..++.....++..++.|+..+..
T Consensus 394 ~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~ 430 (880)
T PRK03918 394 EELEKAKEEIEEEISKITARIGELKKEIKELKKAIEE 430 (880)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444445555555555555544443
No 21
>PRK11637 AmiB activator; Provisional
Probab=98.46 E-value=0.0002 Score=76.64 Aligned_cols=75 Identities=17% Similarity=0.260 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhh
Q 005601 87 YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLR 161 (688)
Q Consensus 87 ~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqL 161 (688)
...++++++..+..+++++...+.....++..++.++.+|..+......++.+++.+..+|..|+.++..+++.+
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l 119 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQ 119 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555554444444444445444444444444444444444444444444444444444333
No 22
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.46 E-value=0.00013 Score=72.94 Aligned_cols=197 Identities=22% Similarity=0.305 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhh
Q 005601 86 SYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDR 165 (688)
Q Consensus 86 k~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDl 165 (688)
.+..+++.+..++......|..+.......+..+..|+.|+...-.....+++-+......+..+.+.+++.-..+. .|
T Consensus 5 ~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k-~l 83 (237)
T PF00261_consen 5 QLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARK-VL 83 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 34555566666666666666666666666666666666666665555555555555555555555555544322221 12
Q ss_pred hch-------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHH--------------HHHHHHHHHHHHHHhHHHHHHHH
Q 005601 166 ENA-------EADLKAAVQKSQLETQEKLKRLSDAASRRELEQ--------------QEVINKLQIAEKQSSLQVESLKL 224 (688)
Q Consensus 166 EN~-------EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE--------------~~~a~kaqEElke~R~RVEsL~s 224 (688)
+|+ -..|...|.+++.. .++.-+.|++..+..-.- -..+..+.++++.+...+.+|..
T Consensus 84 E~r~~~~eeri~~lE~~l~ea~~~-~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~ 162 (237)
T PF00261_consen 84 ENREQSDEERIEELEQQLKEAKRR-AEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEA 162 (237)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhh
Confidence 222 12222222222222 111111122211111000 23334444445555555555555
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 225 KLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREV 284 (688)
Q Consensus 225 KL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQd 284 (688)
+-...-.+...++.+|+.|..+|..--.+...+...+..|+.+|-+|.++|...+..|..
T Consensus 163 ~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~ 222 (237)
T PF00261_consen 163 SEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKK 222 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555666666666666666655555543
No 23
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.41 E-value=0.002 Score=80.03 Aligned_cols=301 Identities=19% Similarity=0.260 Sum_probs=169.1
Q ss_pred hhhhhhhhhhHHHHHhhhhhhhhhccchhhHHHHHhhHH-------------------------------------HHHH
Q 005601 36 DFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEK-------------------------------------EMKE 78 (688)
Q Consensus 36 RVR~LE~ENsrLr~QIe~~eeti~tltrEvs~IK~~YEs-------------------------------------EL~D 78 (688)
++-=|.++|.+|+.++.....+++-|.+..++-.+-|.. -+.+
T Consensus 1168 k~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~k~qE 1247 (1822)
T KOG4674|consen 1168 KLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLEKIQE 1247 (1822)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344478899999999999988888888887777776632 1222
Q ss_pred HHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhHHHHHHHHHHhH
Q 005601 79 MKESV------SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDR--------LSASMQSCTEANEIMKSQK 144 (688)
Q Consensus 79 ARklL------~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLear--------Lsaa~sdrk~aeeelkelk 144 (688)
+|+.+ +-.|...+.+|+..+..+..++..++.-...+..++.+|-.. |.-..+.+..|++++....
T Consensus 1248 l~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke 1327 (1822)
T KOG4674|consen 1248 LRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEEKE 1327 (1822)
T ss_pred HHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 444555556666666666666666666666666666666555 3334445555555555555
Q ss_pred HHHHHHHhhHHHHHhhhh-----------------hhhhchHHHHHHHHHHHHHHHHHH---hhhhhHHHHHHhHHHHHH
Q 005601 145 VTIDELKTQLDEERNLRR-----------------VDRENAEADLKAAVQKSQLETQEK---LKRLSDAASRRELEQQEV 204 (688)
Q Consensus 145 aei~eLe~qLee~RkqLE-----------------VDlEN~EakLqqALqeLR~Qa~ee---~kr~~Daq~r~nReE~~~ 204 (688)
..|++|..-+...|.++. .+++....+|++++.+.+++..+- .+-||-.+ ...
T Consensus 1328 ~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q~~el~~~~~~~~~~~-------e~t 1400 (1822)
T KOG4674|consen 1328 NLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQELELSDKKKAHELMQ-------EDT 1400 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Confidence 555555555555552222 122222455555555555551110 01111111 111
Q ss_pred HHHHHHHHHHH--hHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 205 INKLQIAEKQS--SLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAR 282 (688)
Q Consensus 205 a~kaqEElke~--R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EY 282 (688)
..+..+....+ -..+++|..+|++.++....+..---.+..++.+.+..- .+ .-+.+++.++...+..|
T Consensus 1401 ~rk~e~~~~k~~~~~e~~sl~eeL~e~~q~~~~~~s~~e~i~~e~~~~~k~~---~~------~~~e~~~~~i~~~~e~~ 1471 (1822)
T KOG4674|consen 1401 SRKLEKLKEKLELSEELESLKEELEELQQLQATLQSETEAITKELFEAKKEE---EK------STTERLLEEIKKLLETV 1471 (1822)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHh---hh------hHHHHHHHHHHHHHHHH
Confidence 11222222222 245555555555554444444444433333333333222 11 23445555555566666
Q ss_pred HHHHHHHHhhhHhHHHHHhhhHHHHHHhhHhHhhHHHhhhhhhHhhccHHHHHHHHHHHHHHHHHHHhhh
Q 005601 283 EVAWAKVSGLELDILAATRDLDFERRRLKAARERIMLRETQLRAFYSTTEEISVLFARQQEQLKAMQKTL 352 (688)
Q Consensus 283 QdLmDiKvaLDlEIaAYrKLLEgEE~RLkgareri~lretqlrafystteeis~lfakqqeqlkaMQrTL 352 (688)
....--+-...-.|.-..+.|..|..++..-+-++.=-=+++|--.-+-+.|.....++-++|-.-++++
T Consensus 1472 ~~~~~~~~~~~~~le~~k~e~~~e~e~~~~~~~~~~~E~lk~r~Rl~~eeq~~~~I~rl~~eLe~~~~~~ 1541 (1822)
T KOG4674|consen 1472 RKKTVDADSKSENLEGTKKELESEKEELKQRLTELAAENLKLRSRLAKEEQYQKEISRLKEELESTKEAK 1541 (1822)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 6655444445577777778887777777665555555556777777788889999999999999999888
No 24
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.40 E-value=0.00082 Score=80.78 Aligned_cols=270 Identities=19% Similarity=0.259 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhh
Q 005601 87 YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRE 166 (688)
Q Consensus 87 ~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlE 166 (688)
|...-++|+.++...+..+..+.....+++..+...+.+|..+......+.-.++-.+..+..|+..+..++..+...++
T Consensus 598 ~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 677 (1201)
T PF12128_consen 598 YAASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKE 677 (1201)
T ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455567777776666666666666666666666666666666666666655555555555555555555555554444
Q ss_pred chHHHHHHHHHHHHHHHH---HHhhhhhHHHHHHhHHH-HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHH
Q 005601 167 NAEADLKAAVQKSQLETQ---EKLKRLSDAASRRELEQ-QEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRL 242 (688)
Q Consensus 167 N~EakLqqALqeLR~Qa~---ee~kr~~Daq~r~nReE-~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIRe 242 (688)
.+..++..+|..+..+.+ .+++..-.+.-+..++. ...-...++-.......++.+..++...+. ....++.+
T Consensus 678 ~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~---~~~~~~~~ 754 (1201)
T PF12128_consen 678 ERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQ---EAKEQLKE 754 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 444444444444333310 11111111111111111 222233444555555666666666555443 34567778
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH----HHHHHHhhhHhHHHHHhhhHHHHHHhhH
Q 005601 243 LETQVCKEQNVSASWKKRVEELENEIKKLREELE------SEKAAREV----AWAKVSGLELDILAATRDLDFERRRLKA 312 (688)
Q Consensus 243 LE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe------~QL~EYQd----LmDiKvaLDlEIaAYrKLLEgEE~RLkg 312 (688)
|+.++..+=...----..+..+..+|..|.++|. ..+.+|+. .|+.+-+|--+...+..-|..-+++++.
T Consensus 755 le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 834 (1201)
T PF12128_consen 755 LEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQE 834 (1201)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 8888776532221114466666677766666665 35566654 6887666666777777777777788888
Q ss_pred hHhhHHHhhhhhhHhhccHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 005601 313 ARERIMLRETQLRAFYSTTEEISVLFARQQEQLKAMQKTLEDEENYE 359 (688)
Q Consensus 313 areri~lretqlrafystteeis~lfakqqeqlkaMQrTLeDeeNye 359 (688)
.++++-...+.+.+.....++=-.-+.+++.++.+.-+.|.+--.+-
T Consensus 835 l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~l~~~~~~l 881 (1201)
T PF12128_consen 835 LEQELNQLQKEVKQRRKELEEELKALEEQLEQLEEQLRRLRDLLEKL 881 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 88888777777777777777777778888888888887766544433
No 25
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.38 E-value=0.0081 Score=66.89 Aligned_cols=58 Identities=14% Similarity=0.136 Sum_probs=38.0
Q ss_pred cccccCCCCCCcchhhhhhhhhhhhHHHHHhhhhhhhhhccchhhHHHHHhhHHHHHHHHHHH
Q 005601 21 KGIGICSPDGPLSLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESV 83 (688)
Q Consensus 21 kglgig~~~gpislDRVR~LE~ENsrLr~QIe~~eeti~tltrEvs~IK~~YEsEL~DARklL 83 (688)
-| ||+..--|=++.||..++.+-..+..++..+..-. .....-|..--+||..+++++
T Consensus 14 FG-~~~~~k~~~~~e~~~~~e~eL~~~qeel~~~k~~l----~~~E~~k~~~l~ELe~akr~v 71 (522)
T PF05701_consen 14 FG-GSIDWKKHQSLERVKEKETELEKAQEELAKLKEQL----EAAEREKAQALSELESAKRTV 71 (522)
T ss_pred cC-CccccccCCchhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 35 55544444445999999988888887777776555 333344445556777777776
No 26
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.37 E-value=0.0026 Score=71.67 Aligned_cols=80 Identities=21% Similarity=0.220 Sum_probs=38.1
Q ss_pred HHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 208 LQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWA 287 (688)
Q Consensus 208 aqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmD 287 (688)
..-++..+|+.++.|+.+|.+... .+|+--.+...||... ...+.....+|.+|..+++.--..||+=..
T Consensus 323 t~aeLh~aRLe~aql~~qLad~~l-------~lke~~~q~~qEk~~l---~~~~e~~k~~ie~L~~el~~~e~~lqEer~ 392 (546)
T PF07888_consen 323 TMAELHQARLEAAQLKLQLADASL-------ELKEGRSQWAQEKQAL---QHSAEADKDEIEKLSRELQMLEEHLQEERM 392 (546)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666665555433 3455555556666543 222222223444444444444444444333
Q ss_pred HHHhhhHhHH
Q 005601 288 KVSGLELDIL 297 (688)
Q Consensus 288 iKvaLDlEIa 297 (688)
=...|..+|.
T Consensus 393 E~qkL~~ql~ 402 (546)
T PF07888_consen 393 ERQKLEKQLG 402 (546)
T ss_pred HHHHHHHHHH
Confidence 3345555553
No 27
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.35 E-value=0.00081 Score=79.30 Aligned_cols=266 Identities=21% Similarity=0.320 Sum_probs=187.6
Q ss_pred hhhhhhhhhhhHHHHHhhhhhhhhhccchhhHHH-HHhhHHHHHHHHHHH---------------------------HHH
Q 005601 35 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVV-VERHEKEMKEMKESV---------------------------SIS 86 (688)
Q Consensus 35 DRVR~LE~ENsrLr~QIe~~eeti~tltrEvs~I-K~~YEsEL~DARklL---------------------------~kk 86 (688)
+|.|-||.|-.+|.+= + .+| ++-+.+ -++|..||.+++..| +++
T Consensus 198 erLreLEeEKeeL~~Y----q-kld---k~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~ 269 (1200)
T KOG0964|consen 198 ERLRELEEEKEELEKY----Q-KLD---KERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESED 269 (1200)
T ss_pred HHHHHHHHhHHHHHHH----H-HHH---HhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHH
Confidence 6888888887777643 2 222 332333 368999999999888 566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHh
Q 005601 87 YLHQLKVLRDMLDAKQKELAEISRI-------SAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERN 159 (688)
Q Consensus 87 ~~~EleELk~~L~kKeKEL~~ae~~-------~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~Rk 159 (688)
+-.++.+|..+|..+..+..+++.. ..-++-.+.+|+.++.-..++|..+...++.++..|.+-+..|+....
T Consensus 270 ~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~P 349 (1200)
T KOG0964|consen 270 LKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEP 349 (1200)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6677777777777777766666665 555666778888888888888888888888888777777777766554
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHHHHhhhhhHHH---HHHhHHH--HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhh
Q 005601 160 LRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAA---SRRELEQ--QEVINKLQIAEKQSSLQVESLKLKLDETRERLV 234 (688)
Q Consensus 160 qLEVDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq---~r~nReE--~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ 234 (688)
... ++-..++.+..-|-.++.+++.=|-.|-... .+..|+. .+.+-.+.--+..+.-+...|...|.+++..+.
T Consensus 350 ky~-~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~ 428 (1200)
T KOG0964|consen 350 KYN-SLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELK 428 (1200)
T ss_pred HHH-HHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 443 2222245555556666655332222221110 0112222 455555555555666777788888888999999
Q ss_pred hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhhHHHHHHhhHhH
Q 005601 235 TSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAAR 314 (688)
Q Consensus 235 ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYrKLLEgEE~RLkgar 314 (688)
+...+|+.|+..+..- .-++....++++.+..+++.-...++.||---.+|-..|++..-+|+.=+.+|..+-
T Consensus 429 ~~~e~i~~l~~si~e~-------~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~ 501 (1200)
T KOG0964|consen 429 EKLEEIKELESSINET-------KGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRATM 501 (1200)
T ss_pred HHHHHHHHHHhhHhhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999888722 456788999999999999999999999999999999999999999999888887665
Q ss_pred hh
Q 005601 315 ER 316 (688)
Q Consensus 315 er 316 (688)
-|
T Consensus 502 ~r 503 (1200)
T KOG0964|consen 502 NR 503 (1200)
T ss_pred cc
Confidence 44
No 28
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.33 E-value=0.0028 Score=76.04 Aligned_cols=192 Identities=17% Similarity=0.204 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh---hhhhch----------HHHHHHHHH
Q 005601 111 ISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR---VDRENA----------EADLKAAVQ 177 (688)
Q Consensus 111 ~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE---VDlEN~----------EakLqqALq 177 (688)
++..+++.+..+..+++..-+...+.++.++.+...|.+|+++++.+|+.+. .-.+++ -.+|...+.
T Consensus 378 ~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~ 457 (1293)
T KOG0996|consen 378 RAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLE 457 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444455555555555555555555555544433 111111 333444444
Q ss_pred HHHHHHHHHhhhhhHHHHHHhHHH----HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 005601 178 KSQLETQEKLKRLSDAASRRELEQ----QEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNV 253 (688)
Q Consensus 178 eLR~Qa~ee~kr~~Daq~r~nReE----~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~ 253 (688)
.++.++-+ ++--++....-.+++ .+....+-..+.+.|.+++-..+.|..|-++-..+-+++-+|...|..-+..
T Consensus 458 ~~~~~l~e-~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~ 536 (1293)
T KOG0996|consen 458 KEERELDE-ILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSES 536 (1293)
T ss_pred HHHHHHHH-HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433111 111122222222222 4444445555556666666666666666666666666666666666543322
Q ss_pred h-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhh
Q 005601 254 S-------ASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDL 303 (688)
Q Consensus 254 s-------~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYrKLL 303 (688)
. ..+...+..+..|+.+..+++..-..+-+.+--.+-+|.-++.-|+--|
T Consensus 537 ~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~ 593 (1293)
T KOG0996|consen 537 LKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSL 593 (1293)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2223333333334444444444444444433333334444443333333
No 29
>PRK11637 AmiB activator; Provisional
Probab=98.31 E-value=0.00054 Score=73.43 Aligned_cols=79 Identities=13% Similarity=0.176 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR 162 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE 162 (688)
++.+..++++++..+...++++..++..+..++..+..++.+|+...+....++.++..+..+|..++..+...++.+.
T Consensus 49 l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 49 LKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666666666666666666666666666666666666777777777777777666666665
No 30
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.30 E-value=0.00073 Score=67.70 Aligned_cols=223 Identities=19% Similarity=0.243 Sum_probs=110.4
Q ss_pred hhhhhhhhhHHHHHhhhhhhhhhccchhhHHHHHhhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 37 FRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESV------SISYLHQLKVLRDMLDAKQKELAEISR 110 (688)
Q Consensus 37 VR~LE~ENsrLr~QIe~~eeti~tltrEvs~IK~~YEsEL~DARklL------~kk~~~EleELk~~L~kKeKEL~~ae~ 110 (688)
+..|+.+-..+..++......+ .+...-...+|.|+..+.+-| +.+.-.-+.....+|...++.+..+++
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l----~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er 78 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKL----KEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESER 78 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554 445555566677777766665 444444445555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhchHHHHHHH---HHHHHHHHHHHh
Q 005601 111 ISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAA---VQKSQLETQEKL 187 (688)
Q Consensus 111 ~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~EakLqqA---LqeLR~Qa~ee~ 187 (688)
..+.++++....+.++...-...+.+.....+.-....+....|.... .+|+.++.++..+ +.+|..+ |
T Consensus 79 ~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E----~~Le~aEeR~e~~E~ki~eLE~e----l 150 (237)
T PF00261_consen 79 ARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLE----QELERAEERAEAAESKIKELEEE----L 150 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----H
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhchhHHHHHHH----H
Confidence 555555554444444444444433333333333333333333333322 3333332222222 2222222 1
Q ss_pred hhhhHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 005601 188 KRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENE 267 (688)
Q Consensus 188 kr~~Daq~r~nReE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~E 267 (688)
+.. -...+.-.-.-.++-+.+..+..+|..|..+|...+.++..++.+|..||.++..-.. .+......
T Consensus 151 ~~~----~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~-------eL~~~k~~ 219 (237)
T PF00261_consen 151 KSV----GNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLED-------ELEKEKEK 219 (237)
T ss_dssp HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
T ss_pred HHH----HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 111 1111111222234444556666777777777777777777777777777766654322 33344444
Q ss_pred HHHHHHHHHHHHHHH
Q 005601 268 IKKLREELESEKAAR 282 (688)
Q Consensus 268 i~rLR~EMe~QL~EY 282 (688)
...++++|.+-|.++
T Consensus 220 ~~~~~~eld~~l~el 234 (237)
T PF00261_consen 220 YKKVQEELDQTLNEL 234 (237)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHh
Confidence 556666666666554
No 31
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.25 E-value=0.0067 Score=68.60 Aligned_cols=223 Identities=18% Similarity=0.171 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh-hhhhch--
Q 005601 92 KVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR-VDRENA-- 168 (688)
Q Consensus 92 eELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE-VDlEN~-- 168 (688)
+.|+.+....+.+..-.+.-+..+++.-......|+.....+..-++++..+++++++|+++++--+-.-+ |.+-|+
T Consensus 262 eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er 341 (581)
T KOG0995|consen 262 ESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLER 341 (581)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 34444555555566666666666666666677777777777777777777777777777776642211111 222232
Q ss_pred ------HHHHHHHHHHHHHHH-------H------HHhhhhhHHHHHHhHHH----------------------------
Q 005601 169 ------EADLKAAVQKSQLET-------Q------EKLKRLSDAASRRELEQ---------------------------- 201 (688)
Q Consensus 169 ------EakLqqALqeLR~Qa-------~------ee~kr~~Daq~r~nReE---------------------------- 201 (688)
=++++..+..++..+ | +.+-++|..+++...--
T Consensus 342 ~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~~ 421 (581)
T KOG0995|consen 342 NKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVDLKSYVKP 421 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCccccccchhHhHH
Confidence 122222222222221 1 00111122221111000
Q ss_pred ---------HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHH-------HHHHhhhhHHHHHHHHHH
Q 005601 202 ---------QEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQV-------CKEQNVSASWKKRVEELE 265 (688)
Q Consensus 202 ---------~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL-------~~Er~~s~~~~k~l~~lE 265 (688)
+..++.+..++-.+.-.+..+++.++++.+.+..++-++..++.-. +++..+. +..++.++
T Consensus 422 ~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~---~~E~e~le 498 (581)
T KOG0995|consen 422 LLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKC---RKEIEKLE 498 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 6667777777777777777777777777777777777777776655 3344444 77788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhhHHHHHHhhHhHhhHHHhhhhhhHhhcc
Q 005601 266 NEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARERIMLRETQLRAFYST 330 (688)
Q Consensus 266 ~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYrKLLEgEE~RLkgareri~lretqlrafyst 330 (688)
.++..+.-.|...+.+-..++.. .||.+-+-.-.++|.|.+-+. ||-+||--
T Consensus 499 ~~l~~l~l~~~~~m~~a~~~v~s-----~e~el~~~~~~~~eer~ki~~--------ql~~~i~~ 550 (581)
T KOG0995|consen 499 EELLNLKLVLNTSMKEAEELVKS-----IELELDRMVATGEEERQKIAK--------QLFAVIDQ 550 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH
Confidence 88888888887777766665542 245555556677888877653 66677643
No 32
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.24 E-value=0.01 Score=71.75 Aligned_cols=35 Identities=11% Similarity=0.230 Sum_probs=24.1
Q ss_pred HHhhHhHhhHHHhhhhhhHhhccHHHHHHHHHHHH
Q 005601 308 RRLKAARERIMLRETQLRAFYSTTEEISVLFARQQ 342 (688)
Q Consensus 308 ~RLkgareri~lretqlrafystteeis~lfakqq 342 (688)
.|+.-..+-+-.+..+...|...++.+..+|++.-
T Consensus 899 ~~~~~~~~~~~~~~~l~~~l~~~~~~f~~~l~~~~ 933 (1201)
T PF12128_consen 899 ERLRDLEDLLQRRKRLREELKKAVERFKGVLTKHS 933 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45555666666777777777777888887775543
No 33
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.23 E-value=2.3e-07 Score=107.43 Aligned_cols=291 Identities=19% Similarity=0.206 Sum_probs=0.0
Q ss_pred hhhhhhhhHHHHHhhhhhhhhhccchhhHHHHHhhHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH
Q 005601 38 RSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESV-------------SISYLHQLKVLRDMLDAKQKE 104 (688)
Q Consensus 38 R~LE~ENsrLr~QIe~~eeti~tltrEvs~IK~~YEsEL~DARklL-------------~kk~~~EleELk~~L~kKeKE 104 (688)
+..|.+-..|+.+|++....- -..+..++--|-..+.++..-| =..+..++++|...++..++.
T Consensus 98 kkrE~El~~Lrr~LEe~~~~~---e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~ 174 (859)
T PF01576_consen 98 KKREAELAKLRRDLEEANLQH---EATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKA 174 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344555566666654432222 2223333333443333333333 345667888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhchHHHHHHHHHHHHHHHH
Q 005601 105 LAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQ 184 (688)
Q Consensus 105 L~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~EakLqqALqeLR~Qa~ 184 (688)
...+++.++.++..++++..++.-.-..+..+......+..++..|..+|+++..++. -+......|.+.|.+++.+..
T Consensus 175 k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~-~l~r~k~~L~~qLeelk~~le 253 (859)
T PF01576_consen 175 KQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLS-QLQREKSSLESQLEELKRQLE 253 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999999999998888888888888888888888888887665 112224556666666666666
Q ss_pred HHhhhhhH--HHHHHhHHH------------------HHHHHHHHHHHHHHhHHHHHHHHh-HHHHHHHhhhhHHHHHHH
Q 005601 185 EKLKRLSD--AASRRELEQ------------------QEVINKLQIAEKQSSLQVESLKLK-LDETRERLVTSDNKVRLL 243 (688)
Q Consensus 185 ee~kr~~D--aq~r~nReE------------------~~~a~kaqEElke~R~RVEsL~sK-L~dLe~~n~ale~RIReL 243 (688)
+|.+...- .+++....+ ...++++.-++..|+.++++-... ++.++..--.+..++.+|
T Consensus 254 eEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el 333 (859)
T PF01576_consen 254 EETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQEL 333 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 65543211 111111111 556667777888888888774444 666777677788899999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhhHHHHHHhhHhHhhHHHhhhh
Q 005601 244 ETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARERIMLRETQ 323 (688)
Q Consensus 244 E~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYrKLLEgEE~RLkgareri~lretq 323 (688)
+.++..-+....++.+....|..|+.-|+-+|+.+-+.+..|.-+.-.+|..|+.++.-++..-.-+..+..-.=-.+|.
T Consensus 334 ~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te 413 (859)
T PF01576_consen 334 QEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETE 413 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999888888888999999999999999888888888888899999888877665544444444333344454
Q ss_pred hhHhhccHH
Q 005601 324 LRAFYSTTE 332 (688)
Q Consensus 324 lrafystte 332 (688)
+-..-...+
T Consensus 414 ~~~Lk~~le 422 (859)
T PF01576_consen 414 LFKLKNELE 422 (859)
T ss_dssp ---------
T ss_pred HHHHHhhhH
Confidence 443333333
No 34
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.22 E-value=0.0081 Score=70.22 Aligned_cols=195 Identities=19% Similarity=0.264 Sum_probs=121.2
Q ss_pred CCCcchhhhhhhhhhhhHHHHHhhhhhhhhhccchhhHHHHHhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Q 005601 29 DGPLSLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISY-----LHQLKVLRDMLDAKQK 103 (688)
Q Consensus 29 ~gpislDRVR~LE~ENsrLr~QIe~~eeti~tltrEvs~IK~~YEsEL~DARklL~kk~-----~~EleELk~~L~kKeK 103 (688)
.+-+.+.+++-+|..-++|.. +.+.++++...+|..|-.+| -+..+-|+.-++.|+.
T Consensus 177 ~~~~~~~~~~~~e~~~~~le~------------------lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ 238 (775)
T PF10174_consen 177 EDNEALRRIREAEARIMRLES------------------LLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDT 238 (775)
T ss_pred hhhHHHHHHHHHHHHHHHHHH------------------HHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHH
Confidence 334555566655555555544 44445555554544442222 2223345555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----------------------------HHHHHhHHHHHHHHhhHH
Q 005601 104 ELAEISRISAEQKHEMEDLNDRLSASMQSCTEAN----------------------------EIMKSQKVTIDELKTQLD 155 (688)
Q Consensus 104 EL~~ae~~~~~~Es~indLearLsaa~sdrk~ae----------------------------eelkelkaei~eLe~qLe 155 (688)
.....++.+..++..|..|..++..+..+|..+. .++-.+...+.-+..+..
T Consensus 239 ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~ 318 (775)
T PF10174_consen 239 KIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDS 318 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 6666666666666555555555544444444332 233333333333344444
Q ss_pred HHHhhhh------hhhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHH
Q 005601 156 EERNLRR------VDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDET 229 (688)
Q Consensus 156 e~RkqLE------VDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaqEElke~R~RVEsL~sKL~dL 229 (688)
+.|..+. .-.++....|+.-+..||.. ++....+.-.....+.+++++...+...|+.|+..+.-.
T Consensus 319 d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~r--------le~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~ 390 (775)
T PF10174_consen 319 DMRQHIEVLKESLRAKEQEAEMLQSDVEALRFR--------LEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKK 390 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444 22233377888888888888 888888887789999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHH
Q 005601 230 RERLVTSDNKVRLLETQVCK 249 (688)
Q Consensus 230 e~~n~ale~RIReLE~qL~~ 249 (688)
+..++.+..+|--||.+|..
T Consensus 391 e~ki~~Lq~kie~Lee~l~e 410 (775)
T PF10174_consen 391 ERKINVLQKKIENLEEQLRE 410 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888743
No 35
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=98.20 E-value=0.018 Score=66.57 Aligned_cols=329 Identities=20% Similarity=0.203 Sum_probs=194.7
Q ss_pred cccccCCCCCCc----------chhhhhhhhhhhhHHHHHhhhhhhhhhccchhhHHHHHhhHHHHH------------H
Q 005601 21 KGIGICSPDGPL----------SLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMK------------E 78 (688)
Q Consensus 21 kglgig~~~gpi----------slDRVR~LE~ENsrLr~QIe~~eeti~tltrEvs~IK~~YEsEL~------------D 78 (688)
|.||--.|.++- =++.|-+|+-+-.-|...++-..+-+ .=++.|-.+-|.||. +
T Consensus 225 ~YvGeq~p~~~~~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRv----qSLt~IL~LQEeEL~~Kvqp~d~Le~e~ 300 (739)
T PF07111_consen 225 KYVGEQVPPEVHSQAWEPEREELLETVQHLQEDRDALQATAELLQVRV----QSLTDILTLQEEELCRKVQPSDPLEPEF 300 (739)
T ss_pred HHHhhhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhccCCCCCCCCchh
Confidence 456666665544 37889999888777777666666665 445677788888774 2
Q ss_pred HHHH--HHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005601 79 MKES--VSISY------------------LHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANE 138 (688)
Q Consensus 79 ARkl--L~kk~------------------~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aee 138 (688)
.||. |+.+| .+....|+.+....++++...+.....+.+.+.+..+++.--.-..+.|..
T Consensus 301 ~~K~q~LL~~WREKVFaLmVQLkaQeleh~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevERv~sktLQ~ 380 (739)
T PF07111_consen 301 SRKCQQLLSRWREKVFALMVQLKAQELEHRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVERVGSKTLQA 380 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHH
Confidence 4442 22222 233455666666667777776666677777777777777666655555666
Q ss_pred HHHHhHHHHHHHHhhHHHHHhhhh----------hhhhchHHHHHHHHH------------------------------H
Q 005601 139 IMKSQKVTIDELKTQLDEERNLRR----------VDRENAEADLKAAVQ------------------------------K 178 (688)
Q Consensus 139 elkelkaei~eLe~qLee~RkqLE----------VDlEN~EakLqqALq------------------------------e 178 (688)
++.........+..+...+-.+|. .-|+...+++..||. .
T Consensus 381 ELsrAqea~~~lqqq~~~aee~Lk~v~eav~S~q~~L~s~ma~ve~a~aRL~sL~~RlSyAvrrv~tiqGL~Ark~Alaq 460 (739)
T PF07111_consen 381 ELSRAQEARRRLQQQTASAEEQLKLVSEAVSSSQQWLESQMAKVEQALARLPSLSNRLSYAVRRVHTIQGLMARKLALAQ 460 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccchhHHHHHHHHHHHH
Confidence 665555555555555555444444 112222233333222 2
Q ss_pred HHHH-----------HHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhHHHH----HHHHhHHHHHHHhhhhHHHHHHH
Q 005601 179 SQLE-----------TQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVE----SLKLKLDETRERLVTSDNKVRLL 243 (688)
Q Consensus 179 LR~Q-----------a~ee~kr~~Daq~r~nReE~~~a~kaqEElke~R~RVE----sL~sKL~dLe~~n~ale~RIReL 243 (688)
+|.+ .+-||..++++.-|.--+-+-.+.-.+.++..+|-+.+ .|+.+...|+..+....+-+-.|
T Consensus 461 lrqe~~~~~pp~~~dL~~ELqqLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l 540 (739)
T PF07111_consen 461 LRQEQCPPSPPSVTDLSLELQQLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAEL 540 (739)
T ss_pred HHhccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 01112222222222222212233333344444444333 35555555555555555555555
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhhHHHHHHhhHhHhh-----HH
Q 005601 244 ETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARER-----IM 318 (688)
Q Consensus 244 E~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYrKLLEgEE~RLkgarer-----i~ 318 (688)
+.||.- +++.+.....+...||.++.+|-..|.-+|..|++ ++|-.-.-+|-+-| .|||-||-- ..
T Consensus 541 ~~QL~~-------Ar~~lqes~eea~~lR~EL~~QQ~~y~~alqekvs-evEsrl~E~L~~~E-~rLNeARREHtKaVVs 611 (739)
T PF07111_consen 541 EEQLEA-------ARKSLQESTEEAAELRRELTQQQEVYERALQEKVS-EVESRLREQLSEME-KRLNEARREHTKAVVS 611 (739)
T ss_pred HHHHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 555543 45666788889999999999999999999999999 99998888888888 999999853 56
Q ss_pred HhhhhhhHhhccHHHHHHHHHHHHHHHH----HHHhhhcccccccCccc
Q 005601 319 LRETQLRAFYSTTEEISVLFARQQEQLK----AMQKTLEDEENYENTSV 363 (688)
Q Consensus 319 lretqlrafystteeis~lfakqqeqlk----aMQrTLeDeeNyent~~ 363 (688)
||-.|-+|-.-- |--+.+..-|.+..+ -..+-|..=|-|-|-.|
T Consensus 612 LRQ~qrqa~reK-er~~E~~~lq~e~~~~e~~rl~~rlqelerdkNl~l 659 (739)
T PF07111_consen 612 LRQIQRQAAREK-ERNQELRRLQEEARKEEGQRLTQRLQELERDKNLML 659 (739)
T ss_pred HHHHHHHHHHhh-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 777776664432 334444444444332 23445666667777666
No 36
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.09 E-value=0.01 Score=74.10 Aligned_cols=281 Identities=19% Similarity=0.194 Sum_probs=156.6
Q ss_pred hhhhccchhhHHHHHhhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 56 LEIDKLRNENRVVVERHEKEMKEMKESV------SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSAS 129 (688)
Q Consensus 56 eti~tltrEvs~IK~~YEsEL~DARklL------~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa 129 (688)
.-|++|.+++..+|.-.+.+-.++|.+. +.-|...++++...++....++..++..+..++..+.+|+.+|...
T Consensus 805 ~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~ 884 (1822)
T KOG4674|consen 805 SRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSA 884 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566667888888888888888888877 7777778888888888888888888888888888888888888777
Q ss_pred HHhHHHHHHH--HHHhHHHHHHHHhhH---HHHHhhhh-------------hhhhchHHHHHHHHHHHHHHHHHHhhhhh
Q 005601 130 MQSCTEANEI--MKSQKVTIDELKTQL---DEERNLRR-------------VDRENAEADLKAAVQKSQLETQEKLKRLS 191 (688)
Q Consensus 130 ~sdrk~aeee--lkelkaei~eLe~qL---ee~RkqLE-------------VDlEN~EakLqqALqeLR~Qa~ee~kr~~ 191 (688)
......+... +.+.-..++.|+..+ .+++.+|. --.+++-..++..|++.|.++-..|+-.+
T Consensus 885 ~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~ 964 (1822)
T KOG4674|consen 885 KTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLH 964 (1822)
T ss_pred HHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 7666555532 222222222222222 22244443 22333355566666666666333332222
Q ss_pred HHHHHHhHH--H-HHHHHHHHHH-----------HHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHH-------
Q 005601 192 DAASRRELE--Q-QEVINKLQIA-----------EKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKE------- 250 (688)
Q Consensus 192 Daq~r~nRe--E-~~~a~kaqEE-----------lke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~E------- 250 (688)
.......-+ + ...+..++++ +-....++.+|+.-+..++...+..+..++.|-.++..+
T Consensus 965 ~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a 1044 (1822)
T KOG4674|consen 965 KKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKA 1044 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222111100 0 1111111110 122233344444444444444455555555555555444
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhHhHHHHHhhhHHHHHHhhHhHhhHHHhhhh
Q 005601 251 QNVSASWKKRVEELENEIKKLREELESEKAAREVAWAK-------VSGLELDILAATRDLDFERRRLKAARERIMLRETQ 323 (688)
Q Consensus 251 r~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDi-------KvaLDlEIaAYrKLLEgEE~RLkgareri~lretq 323 (688)
+..|.+.....+..=..|++||.+...-..+|..|=.. =..+.--++--.++|+-| +.-+-.||.==++|
T Consensus 1045 ~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe---~~~~~~~~~~L~~q 1121 (1822)
T KOG4674|consen 1045 QSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEKEDALEQE---VNELKKRIESLEKQ 1121 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 55565555555666666677777666666655544211 111222233344555554 45666788777888
Q ss_pred hhHhhccHHHHHHHHH
Q 005601 324 LRAFYSTTEEISVLFA 339 (688)
Q Consensus 324 lrafystteeis~lfa 339 (688)
.+-.|+-.++++..-+
T Consensus 1122 NslLh~qie~~s~~~~ 1137 (1822)
T KOG4674|consen 1122 NSLLHDQFEELSQQSA 1137 (1822)
T ss_pred HHHHHHHHHHHhhhhh
Confidence 8888888777776633
No 37
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.09 E-value=0.014 Score=68.43 Aligned_cols=204 Identities=21% Similarity=0.242 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh-
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR- 162 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE- 162 (688)
...+..+++.|+.+|+.|...|...+..+..++.-...+..+|+-..-.....+-.+.-+.+.|+.|+.+|.+--++|.
T Consensus 338 ~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~ 417 (775)
T PF10174_consen 338 AEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDE 417 (775)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888888888888888888888888887777777777777777888888888888888865555554
Q ss_pred -hhhhc-----------------h---HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhHHHHH
Q 005601 163 -VDREN-----------------A---EADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVES 221 (688)
Q Consensus 163 -VDlEN-----------------~---EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaqEElke~R~RVEs 221 (688)
.++=+ + ..++...|.+.|..+..+. ...+...+.+++.+++.|+.
T Consensus 418 ~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~--------------~Eele~~~~e~~~lk~~~~~ 483 (775)
T PF10174_consen 418 EKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKER--------------QEELETYQKELKELKAKLES 483 (775)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 11111 1 2333444444443322222 33334444445555555555
Q ss_pred HHHhHHHHH----------------------------HHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 005601 222 LKLKLDETR----------------------------ERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLRE 273 (688)
Q Consensus 222 L~sKL~dLe----------------------------~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~ 273 (688)
|.++|++.. -.+.....+|-.|+.+|...|..- ....++..++.++.+.+.
T Consensus 484 LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~-e~~~r~~~Le~ev~~~~e 562 (775)
T PF10174_consen 484 LQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRANA-ELRDRIQQLEQEVTRYRE 562 (775)
T ss_pred HhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCH-hhcchHHHHHHHHHHHHH
Confidence 544444443 333334556666666666643221 225577788888888887
Q ss_pred HHHHHHHHHHHHHHHHH-------hhhHhHHHHHhh
Q 005601 274 ELESEKAAREVAWAKVS-------GLELDILAATRD 302 (688)
Q Consensus 274 EMe~QL~EYQdLmDiKv-------aLDlEIaAYrKL 302 (688)
+...-..|-+-||+|.- .++.+|+-.-+.
T Consensus 563 e~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~Leke 598 (775)
T PF10174_consen 563 ESEKAQAEVERLLDILREAENEKNDKEKKIGELEKE 598 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 77777777777777644 445555554444
No 38
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.08 E-value=0.0033 Score=72.59 Aligned_cols=182 Identities=17% Similarity=0.226 Sum_probs=101.5
Q ss_pred hhhhhhhhhhhHHHHHhhhhhhhhhccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 35 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAE 114 (688)
Q Consensus 35 DRVR~LE~ENsrLr~QIe~~eeti~tltrEvs~IK~~YEsEL~DARklL~kk~~~EleELk~~L~kKeKEL~~ae~~~~~ 114 (688)
|-...||++-.+|+-+|+.....- .|.+.--.+|.+- -+.+..++ ..++.....
T Consensus 418 ~a~~rLE~dvkkLraeLq~~Rq~E----~ELRsqis~l~~~--------Er~lk~eL--------------~qlr~ene~ 471 (697)
T PF09726_consen 418 DAISRLEADVKKLRAELQSSRQSE----QELRSQISSLTNN--------ERSLKSEL--------------SQLRQENEQ 471 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhH----HHHHHHHhhcccc--------chHHHHHH--------------HHHHHHHHH
Confidence 455678888888888887777555 3333333323220 01222222 222223335
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhchH-H---------HHHHHHHHHHHHHH
Q 005601 115 QKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAE-A---------DLKAAVQKSQLETQ 184 (688)
Q Consensus 115 ~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~E-a---------kLqqALqeLR~Qa~ 184 (688)
++++++.|.....+-++.+..||..+++.+.....|++||.++|+.+..+-+.+. + .-.+++..=|.|
T Consensus 472 Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~-- 549 (697)
T PF09726_consen 472 LQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQ-- 549 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHH--
Confidence 5556666666666666777777777888888888888888888888774434331 1 233334333333
Q ss_pred HHhhhhhHHHHHHhHHH----HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHH
Q 005601 185 EKLKRLSDAASRRELEQ----QEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKE 250 (688)
Q Consensus 185 ee~kr~~Daq~r~nReE----~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~E 250 (688)
-|..++..|.| .+.+..+..+..++|.....-..-.+.|-..++++.++..-||.-|..|
T Consensus 550 ------lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaE 613 (697)
T PF09726_consen 550 ------LESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAE 613 (697)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 33333333333 4555556666655555422222345556666666666666677666555
No 39
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.99 E-value=0.051 Score=60.69 Aligned_cols=266 Identities=18% Similarity=0.190 Sum_probs=146.0
Q ss_pred chhhHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----
Q 005601 62 RNENRVVVERHEKEMKEMKESV--SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTE---- 135 (688)
Q Consensus 62 trEvs~IK~~YEsEL~DARklL--~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~---- 135 (688)
.+|+.+++.+|..-+++++-+- +.+++.++..+...-+...+....+..........+.+|..+|..++...-.
T Consensus 115 k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a 194 (522)
T PF05701_consen 115 KAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLA 194 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999888888777 7888888888776666666666666666666666666666665554444333
Q ss_pred ---HHHHHHHhH----HHHHHHHhhHHHHHhhhh---hhh---hchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhH---
Q 005601 136 ---ANEIMKSQK----VTIDELKTQLDEERNLRR---VDR---ENAEADLKAAVQKSQLETQEKLKRLSDAASRREL--- 199 (688)
Q Consensus 136 ---aeeelkelk----aei~eLe~qLee~RkqLE---VDl---EN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nR--- 199 (688)
+++....+. ..+..++..|....+.++ .++ .+-+++|..+...+-.- |.||+-..+..+...-
T Consensus 195 ~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~L-q~El~~~~~~~l~~~~~~~ 273 (522)
T PF05701_consen 195 HIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELESL-QAELEAAKESKLEEEAEAK 273 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhHHhh
Confidence 332222221 111222333333332222 111 11245555444433332 3445554443333311
Q ss_pred ----HHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 005601 200 ----EQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREEL 275 (688)
Q Consensus 200 ----eE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EM 275 (688)
..+..+..+..++.+++..+......+..|+..+..|...+...=.-+..=+.+-..+...+..|+.+|.++|.+|
T Consensus 274 ~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eL 353 (522)
T PF05701_consen 274 EKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSEL 353 (522)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Confidence 1145566667777777777776666666666666666655544333333333333334566778888888888888
Q ss_pred HHHHHHHH-------HHHHHHHhhhHhHHHHHhhhHHHHHHhhHhHhhHHHhhhhhhHhhccHH
Q 005601 276 ESEKAARE-------VAWAKVSGLELDILAATRDLDFERRRLKAARERIMLRETQLRAFYSTTE 332 (688)
Q Consensus 276 e~QL~EYQ-------dLmDiKvaLDlEIaAYrKLLEgEE~RLkgareri~lretqlrafystte 332 (688)
+.-..+-. +++-.--.|-.|...+++.+..-..-+..++.-| -|.++=..|+|
T Consensus 354 ea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~----e~~ka~i~t~E 413 (522)
T PF05701_consen 354 EAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEA----EQTKAAIKTAE 413 (522)
T ss_pred HHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 66544333 3333333444566666665555444444444432 24455555554
No 40
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.96 E-value=0.018 Score=69.44 Aligned_cols=127 Identities=14% Similarity=0.240 Sum_probs=80.0
Q ss_pred hhhhhccccccccccccCCCC--CCcchhhhhhhhhhhhHHHHHhhhhhhhhhccchhhHHHHHhhHHHHHHHHHHHHHH
Q 005601 9 KAEEYVSDNKRLKGIGICSPD--GPLSLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSIS 86 (688)
Q Consensus 9 k~e~~~~e~kr~kglgig~~~--gpislDRVR~LE~ENsrLr~QIe~~eeti~tltrEvs~IK~~YEsEL~DARklL~kk 86 (688)
|+.-+.+.+++.+|.+.|.+- -|+|-+.|+.||..-++.......+...+ .++.+. ...
T Consensus 750 ~SGtmtGGG~~v~~g~mg~~~~~t~~s~~~v~~le~~l~~~~~~~~~~~~~~---------------~~~ee~----~~~ 810 (1293)
T KOG0996|consen 750 KSGTMTGGGKKVKGGRMGTSIRVTGVSKESVEKLERALSKMSDKARQHQEQL---------------HELEER----VRK 810 (1293)
T ss_pred ccccccCCCCcCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHH----HHH
Confidence 566777888998888888776 58899999999988888777765555444 111111 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHH
Q 005601 87 YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEER 158 (688)
Q Consensus 87 ~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~R 158 (688)
++....+|...+.+.+-+...+-.....+++++..+++.+.....+. +.++.++++|.+|+++++++.
T Consensus 811 lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~----~~l~~~~~~ie~l~kE~e~~q 878 (1293)
T KOG0996|consen 811 LRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDK----KRLKELEEQIEELKKEVEELQ 878 (1293)
T ss_pred HHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcH----HHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555566677777777777744443333 344556666666766666653
No 41
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.94 E-value=0.016 Score=68.33 Aligned_cols=232 Identities=17% Similarity=0.162 Sum_probs=156.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHh---hH
Q 005601 78 EMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKT---QL 154 (688)
Q Consensus 78 DARklL~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~---qL 154 (688)
|.|.+.+.....+...|+..+. +....|+..+..++.++..++..+........++-++...|+.+++.|.. |+
T Consensus 329 d~~~~~~~~~~~e~~~~~~~l~---~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~ 405 (980)
T KOG0980|consen 329 DPRELQIEQLSREVAQLKAQLE---NLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQL 405 (980)
T ss_pred ChhhHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555543 23445666666777777777777766666555555555545444444322 22
Q ss_pred HHHHhhhh------hhhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHH
Q 005601 155 DEERNLRR------VDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDE 228 (688)
Q Consensus 155 ee~RkqLE------VDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaqEElke~R~RVEsL~sKL~d 228 (688)
+.++..++ --.+|+=.+|+..+-++|.. |-+-++.|-+=.+....++...-.+.-....|+-+|+.
T Consensus 406 eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~--------h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~ 477 (980)
T KOG0980|consen 406 EKAQVLVEEAENKALAAENRYEKLKEKYTELRQE--------HADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEE 477 (980)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 22221122 23445578899999999999 66666666666666666666666777778889999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhhHHHHH
Q 005601 229 TRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERR 308 (688)
Q Consensus 229 Le~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYrKLLEgEE~ 308 (688)
+..+...++.+.+++..++..-|..++...-+++.++..+.-+...-.+++++..+++.-|-.|=-+..+- +.+.+.-
T Consensus 478 ~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~--~~e~~~~ 555 (980)
T KOG0980|consen 478 LQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVAR--EEEREAL 555 (980)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--HHHHHHH
Confidence 99999999999999999998888888777888888888888888888889999988888886554443332 2445556
Q ss_pred HhhHhHhhHHHhhhhhhHh
Q 005601 309 RLKAARERIMLRETQLRAF 327 (688)
Q Consensus 309 RLkgareri~lretqlraf 327 (688)
|+..+|- .-||+.=
T Consensus 556 ~~e~e~s-----i~ql~l~ 569 (980)
T KOG0980|consen 556 RLEAERS-----INQLELD 569 (980)
T ss_pred HHHHHhh-----HHHhhcc
Confidence 7777666 4455554
No 42
>PRK01156 chromosome segregation protein; Provisional
Probab=97.92 E-value=0.089 Score=61.20 Aligned_cols=30 Identities=10% Similarity=0.168 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 87 YLHQLKVLRDMLDAKQKELAEISRISAEQK 116 (688)
Q Consensus 87 ~~~EleELk~~L~kKeKEL~~ae~~~~~~E 116 (688)
...++++|...+.+....+...+.....|+
T Consensus 520 ~~~~~~~l~~~l~~~~~~l~~le~~~~~~~ 549 (895)
T PRK01156 520 EYNKIESARADLEDIKIKINELKDKHDKYE 549 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444333
No 43
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.91 E-value=0.0052 Score=63.22 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhh
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLR 161 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqL 161 (688)
+..|-.+++.|.++.+...++|..+. +.+..++..|........+++.++..+..+|++++.++..++..+
T Consensus 12 iq~lD~e~~rl~~~~~~~~~~l~k~~-------~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 12 IQKLDLEKDRLEPRIKEIRKALKKAK-------AELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777666666665433 334444444444444455555555555555555555555554444
No 44
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.91 E-value=0.016 Score=63.80 Aligned_cols=68 Identities=12% Similarity=0.219 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhH
Q 005601 87 YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQL 154 (688)
Q Consensus 87 ~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qL 154 (688)
+..+++.+..++....+....++..+.+++..++.+...|..+..+.++++..|.++.+.|..|+.|.
T Consensus 43 ~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 43 IQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444444444444444
No 45
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.88 E-value=0.1 Score=62.09 Aligned_cols=239 Identities=22% Similarity=0.271 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh-
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR- 162 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE- 162 (688)
-.|+..+.-+|++.|....+++..|+.--..+...+.|+..-+-.+--++.-|++-...|..++.-|+.-++++-..||
T Consensus 271 kSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEI 350 (1243)
T KOG0971|consen 271 KSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEI 350 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888999999999999999998889999999999999888888888888888888888888888887777777
Q ss_pred --hhhhch------------------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHH
Q 005601 163 --VDRENA------------------EADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESL 222 (688)
Q Consensus 163 --VDlEN~------------------EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaqEElke~R~RVEsL 222 (688)
.+.+|. ..+|+.||-+||.= +-.+.....+++-|+-..++-++.|
T Consensus 351 LKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDl---------------sA~ek~d~qK~~kelE~k~sE~~eL 415 (1243)
T KOG0971|consen 351 LKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDL---------------SASEKQDHQKLQKELEKKNSELEEL 415 (1243)
T ss_pred HHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhc---------------chHHHHHHHHHHHHHHHHhhHHHHH
Confidence 444544 78899999888875 1122333445555555555555556
Q ss_pred HHhHHHHHHHhhhhHHHHHHHHHHHH----------HHHhhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 005601 223 KLKLDETRERLVTSDNKVRLLETQVC----------KEQNVSASWKKRVEELENEIKKLR--EELESEKAAREVAWAKVS 290 (688)
Q Consensus 223 ~sKL~dLe~~n~ale~RIReLE~qL~----------~Er~~s~~~~k~l~~lE~Ei~rLR--~EMe~QL~EYQdLmDiKv 290 (688)
+..-+.|..++..++..|-+|-.|++ .==++..|...++-.||.+|..|- ++|..||+|-+-=+-+-+
T Consensus 416 ~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DL 495 (1243)
T KOG0971|consen 416 RRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDL 495 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555556666666666555543 222333445666666777766664 467777777554332222
Q ss_pred hhhHhHH-HHHhhhHHHHHHhhHhHhhHHHhhhhhhHhhccHHHHHHHHHHHHHHHHH
Q 005601 291 GLELDIL-AATRDLDFERRRLKAARERIMLRETQLRAFYSTTEEISVLFARQQEQLKA 347 (688)
Q Consensus 291 aLDlEIa-AYrKLLEgEE~RLkgareri~lretqlrafystteeis~lfakqqeqlka 347 (688)
.=+++.+ -.+|-|. .|.+.|.|-|.=|--=+- -.-.|.|+-|+||.-
T Consensus 496 reEld~~~g~~kel~---~r~~aaqet~yDrdqTI~-------KfRelva~Lqdqlqe 543 (1243)
T KOG0971|consen 496 REELDMAKGARKELQ---KRVEAAQETVYDRDQTIK-------KFRELVAHLQDQLQE 543 (1243)
T ss_pred HHHHHHHhhHHHHHH---HHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHH
Confidence 2122222 2233332 334455554444332222 234577777777754
No 46
>PRK01156 chromosome segregation protein; Provisional
Probab=97.86 E-value=0.11 Score=60.43 Aligned_cols=19 Identities=11% Similarity=0.197 Sum_probs=7.2
Q ss_pred HhhHhHhhHHHhhhhhhHh
Q 005601 309 RLKAARERIMLRETQLRAF 327 (688)
Q Consensus 309 RLkgareri~lretqlraf 327 (688)
++..++..+.--+.++..+
T Consensus 675 ~~~~~~~~~~~l~~~l~~l 693 (895)
T PRK01156 675 RINDIEDNLKKSRKALDDA 693 (895)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344443333333333333
No 47
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.86 E-value=0.023 Score=68.18 Aligned_cols=192 Identities=15% Similarity=0.225 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh-
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR- 162 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE- 162 (688)
.+-.|..+-+-...|+.........+.+...+...+.+...++..+.+..++.+..+..++.+...-...++.+|+.+.
T Consensus 269 ~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~ 348 (1074)
T KOG0250|consen 269 AKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDD 348 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 4455665555555566666666666666666666666666666666666666666666666555555555555555444
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHH----HHHHHHHHHHH-HHHhHHHHHHHHhHHHHHHHhhhhH
Q 005601 163 VDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQ----QEVINKLQIAE-KQSSLQVESLKLKLDETRERLVTSD 237 (688)
Q Consensus 163 VDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE----~~~a~kaqEEl-ke~R~RVEsL~sKL~dLe~~n~ale 237 (688)
.-++ -.+++.-.++. ...++.-+.. ...|+.+.++. +.+-.+++....|++.|..++..++
T Consensus 349 ~~re--~~~~~~~~~~~------------~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e 414 (1074)
T KOG0250|consen 349 LRRE--VNDLKEEIREI------------ENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLE 414 (1074)
T ss_pred HHHH--HHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 1111 11111111111 1111111111 34444555544 5555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 238 NKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKV 289 (688)
Q Consensus 238 ~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiK 289 (688)
..+..|..-++.-+........+....+.+|..||+.+++...+.++|=+.|
T Consensus 415 ~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k 466 (1074)
T KOG0250|consen 415 EQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTK 466 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5555555555544555544555666677777777777777777777765543
No 48
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.85 E-value=0.028 Score=61.19 Aligned_cols=67 Identities=10% Similarity=0.166 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhh
Q 005601 87 YLHQLKVLRDMLDAKQKELAEISRISAEQK----HEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQ 153 (688)
Q Consensus 87 ~~~EleELk~~L~kKeKEL~~ae~~~~~~E----s~indLearLsaa~sdrk~aeeelkelkaei~eLe~q 153 (688)
+..+++.|+..+...+.++...+..+..++ ..+.+++.++......+..++.++..++.+|..|..+
T Consensus 179 ~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~ 249 (562)
T PHA02562 179 LNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMD 249 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333444444444444444433333332222 3344455555555555544444444444444444433
No 49
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.84 E-value=0.1 Score=60.77 Aligned_cols=124 Identities=17% Similarity=0.222 Sum_probs=77.9
Q ss_pred HHHHHHHHhHHHHHHHhhhhHHHHHHHHHHH---------------HHHHhhhhHHHHH----HHHHHHHHHHHHHHHHH
Q 005601 217 LQVESLKLKLDETRERLVTSDNKVRLLETQV---------------CKEQNVSASWKKR----VEELENEIKKLREELES 277 (688)
Q Consensus 217 ~RVEsL~sKL~dLe~~n~ale~RIReLE~qL---------------~~Er~~s~~~~k~----l~~lE~Ei~rLR~EMe~ 277 (688)
-|-+.+|..|.+|+.++-+++.|+.+|=.+| .-.-.+.+.|.+. .+.|..--+.||--.+.
T Consensus 605 rrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL~dSQtllr~~v~~ 684 (961)
T KOG4673|consen 605 RREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATAWEREERSLNERLSDSQTLLRINVLE 684 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3456788888899999999999887765443 2222223333331 12222222344444444
Q ss_pred HHHHHHHHHHHHHh----------hhHhHHHHHhhhHHHHHHhhHhHhhHHHh----hhhhhHhhccHHHHHHHHHH
Q 005601 278 EKAAREVAWAKVSG----------LELDILAATRDLDFERRRLKAARERIMLR----ETQLRAFYSTTEEISVLFAR 340 (688)
Q Consensus 278 QL~EYQdLmDiKva----------LDlEIaAYrKLLEgEE~RLkgareri~lr----etqlrafystteeis~lfak 340 (688)
+-.+.|+||..+.+ |..|-+++++-|+.|..|+..-|.-..+- +||--.+-++-+||..+-.+
T Consensus 685 eqgekqElL~~~~~l~s~~~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~ 761 (961)
T KOG4673|consen 685 EQGEKQELLSLNFSLPSSPIQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRK 761 (961)
T ss_pred HhhhHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899988765 46778899999999999988766544331 34555566777777776544
No 50
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.83 E-value=0.047 Score=67.16 Aligned_cols=93 Identities=10% Similarity=0.022 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 206 NKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVA 285 (688)
Q Consensus 206 ~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdL 285 (688)
..+.......+.+++.+...+...+.....+..++..+..++..=+... ....+.+..+|.+++.+++.-..++..+
T Consensus 871 ~~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l---~~~~eel~a~L~e~r~rL~~l~~el~~~ 947 (1353)
T TIGR02680 871 RHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESV---GAMVDEIRARLAETRAALASGGRELPRL 947 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444433333 3335667777777777777766666666
Q ss_pred HHHHHhhhHhHHHHHh
Q 005601 286 WAKVSGLELDILAATR 301 (688)
Q Consensus 286 mDiKvaLDlEIaAYrK 301 (688)
-.-..++.-+|.....
T Consensus 948 ~~~~~~a~~~~~~a~~ 963 (1353)
T TIGR02680 948 AEALATAEEARGRAEE 963 (1353)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555544444433
No 51
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.82 E-value=0.017 Score=69.66 Aligned_cols=184 Identities=13% Similarity=0.165 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh-
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR- 162 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE- 162 (688)
+..+....+..+..|...++-...|+..+..-.+-+..-+..|.....+-..+|.-+...-.++.+|.+-+++++.+.-
T Consensus 1558 A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~q 1637 (1758)
T KOG0994|consen 1558 AEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQ 1637 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666777777777777777777777777777777777777777777788888888888888888888776655
Q ss_pred --hhhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-hHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHH
Q 005601 163 --VDRENAEADLKAAVQKSQLETQEKLKRLSDAASRR-ELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNK 239 (688)
Q Consensus 163 --VDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~-nReE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~R 239 (688)
.+..+++ +..-+...-=..|+..++ ++.. +..-.+.+.+-.+...-.|-|++.|+....+|-.+...-.++
T Consensus 1638 ns~~A~~a~-~~a~sa~~~A~~a~q~~~-----~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~ 1711 (1758)
T KOG0994|consen 1638 NSAEAKQAE-KTAGSAKEQALSAEQGLE-----ILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDR 1711 (1758)
T ss_pred ccHHHHHHH-HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222221 111111110111112221 1111 111144455556677778889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 240 VRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKA 280 (688)
Q Consensus 240 IReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~ 280 (688)
+.+||.-. .++...|..+..+|..|.++|.+-|.
T Consensus 1712 l~dLe~~y-------~~~~~~L~~~~aeL~~Le~r~~~vl~ 1745 (1758)
T KOG0994|consen 1712 LKDLELEY-------LRNEQALEDKAAELAGLEKRVESVLD 1745 (1758)
T ss_pred HHHHHHHH-------hhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 99988543 23355566666677777666666554
No 52
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.82 E-value=0.061 Score=64.44 Aligned_cols=319 Identities=17% Similarity=0.172 Sum_probs=187.0
Q ss_pred cccccccCCCCCCcchhhhhhhhhhhhHHHHHhhhhhhhhhccchhhHHH----------HHhhHH---HHHHHHHHH--
Q 005601 19 RLKGIGICSPDGPLSLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVV----------VERHEK---EMKEMKESV-- 83 (688)
Q Consensus 19 r~kglgig~~~gpislDRVR~LE~ENsrLr~QIe~~eeti~tltrEvs~I----------K~~YEs---EL~DARklL-- 83 (688)
+-.|+=.||.. |-+-+..+.|+.=|. ...+|+..+-.++.+.+++..+ +..|+- +|+=+.+-+
T Consensus 656 dP~GtlTGGs~-~~~a~~L~~l~~l~~-~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~ 733 (1174)
T KOG0933|consen 656 DPSGTLTGGSR-SKGADLLRQLQKLKQ-AQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQ 733 (1174)
T ss_pred CCCCcccCCCC-CCcccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555444432 123345566654443 3444444444444444444443 333333 222222222
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhh
Q 005601 84 --SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLR 161 (688)
Q Consensus 84 --~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqL 161 (688)
..++.+.++++...+.+.+-++..-.+..+..+..+..|+....-+.+.|.. .++++.++|..++..++..++.+
T Consensus 734 ~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~---rlkdl~keik~~k~~~e~~~~~~ 810 (1174)
T KOG0933|consen 734 NEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRER---RLKDLEKEIKTAKQRAEESSKEL 810 (1174)
T ss_pred ChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHh---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777788888888888888888888888888888888888888777776643 66667777777777776666665
Q ss_pred h-------------hhhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhHHHH-------H
Q 005601 162 R-------------VDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVE-------S 221 (688)
Q Consensus 162 E-------------VDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaqEElke~R~RVE-------s 221 (688)
+ ..++..-..+++.|+.+..+ .+.|++.-+.+--.-+.-.....+++++++.....+- .
T Consensus 811 ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~-~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~ 889 (1174)
T KOG0933|consen 811 EKRENEYERLQLEHEELEKEISSLKQQLEQLEKQ-ISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISG 889 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhh
Confidence 5 33333355666666666666 4555554444433333334445555555555444433 3
Q ss_pred HHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-----------------------HHH
Q 005601 222 LKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREEL-----------------------ESE 278 (688)
Q Consensus 222 L~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EM-----------------------e~Q 278 (688)
+-..........+..+-.+..||.-+..-...++++++++..+..+...+-+|- -.+
T Consensus 890 ~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~p~~are~l~~ 969 (1174)
T KOG0933|consen 890 LLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYDPHEAREELKK 969 (1174)
T ss_pred hhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccccccCCHhHHHHHHHH
Confidence 344445666777777788888888888777778888899988888887776221 233
Q ss_pred HHHHHHHHHHHHhhhHhHHHHHhhhHHHHHHhhHhHhhHHHhhhhhhHhhccHHHHHHHHHHHHHHH-HHHHhh
Q 005601 279 KAAREVAWAKVSGLELDILAATRDLDFERRRLKAARERIMLRETQLRAFYSTTEEISVLFARQQEQL-KAMQKT 351 (688)
Q Consensus 279 L~EYQdLmDiKvaLDlEIaAYrKLLEgEE~RLkgareri~lretqlrafystteeis~lfakqqeql-kaMQrT 351 (688)
|++.++-|-..+- + +..-+|+..|.+.+.-+.++=.=|. -|---..-|+.|=-+-+++| ||-+.-
T Consensus 970 Lq~k~~~l~k~vn----~-~~m~mle~~E~~~~~lk~k~~~Ie~---Dk~kI~ktI~~lDe~k~~~L~kaw~~V 1035 (1174)
T KOG0933|consen 970 LQEKKEKLEKTVN----P-KNMDMLERAEEKEAALKTKKEIIEK---DKSKIKKTIEKLDEKKREELNKAWEKV 1035 (1174)
T ss_pred hhHHHHHHHhhcC----H-HHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443322 1 3456788888888887766543333 33333344566655544444 555544
No 53
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.82 E-value=0.22 Score=62.36 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhH------HHHHHHHhHHHHHHHh
Q 005601 202 QEVINKLQIAEKQSSL------QVESLKLKLDETRERL 233 (688)
Q Consensus 202 ~~~a~kaqEElke~R~------RVEsL~sKL~dLe~~n 233 (688)
..+-+.+++-++.++. ++..|+.+|.+|+.++
T Consensus 492 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 529 (1486)
T PRK04863 492 SEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRL 529 (1486)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5666666666665553 4566777777777733
No 54
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.81 E-value=0.046 Score=67.98 Aligned_cols=49 Identities=27% Similarity=0.300 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQS 132 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sd 132 (688)
+.+|+.+..+.+.+|.+++..+......+.+++.++..|+..+..+..-
T Consensus 288 Aag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~ky 336 (1486)
T PRK04863 288 ALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDH 336 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555555555555443
No 55
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.81 E-value=0.096 Score=63.78 Aligned_cols=54 Identities=24% Similarity=0.363 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhhHHHHHHhhHh
Q 005601 260 RVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAA 313 (688)
Q Consensus 260 ~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYrKLLEgEE~RLkga 313 (688)
+|...+.++.++-..+..++.+|+-+=..-+-+.-|....+-++-+...++++-
T Consensus 694 ~L~~~e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~~~~~~~l 747 (1317)
T KOG0612|consen 694 RLQDKEAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQSQEKLNEL 747 (1317)
T ss_pred HHhhHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhhhccchhhh
Confidence 455555556666566666666665555544445555555555555554444443
No 56
>PRK09039 hypothetical protein; Validated
Probab=97.81 E-value=0.0051 Score=65.35 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhHHHHH
Q 005601 122 LNDRLSASMQSCTEANEIMKSQKVTID 148 (688)
Q Consensus 122 LearLsaa~sdrk~aeeelkelkaei~ 148 (688)
|-.-|+.-.+....++.++..++.++.
T Consensus 65 L~e~L~le~~~~~~l~~~l~~l~~~l~ 91 (343)
T PRK09039 65 LADLLSLERQGNQDLQDSVANLRASLS 91 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 444444444444444444444444433
No 57
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=97.76 E-value=0.0035 Score=67.61 Aligned_cols=64 Identities=19% Similarity=0.379 Sum_probs=42.4
Q ss_pred HHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 221 SLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAK 288 (688)
Q Consensus 221 sL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDi 288 (688)
.|..++..++.++..+..++..|..++..-+... ..+...+.++.+|..+.+..-.-|+.++..
T Consensus 314 ~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~----~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r 377 (498)
T TIGR03007 314 QLQIELAEAEAEIASLEARVAELTARIERLESLL----RTIPEVEAELTQLNRDYEVNKSNYEQLLTR 377 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666667777777777777666666555444 445666777777777777777777766654
No 58
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.73 E-value=0.18 Score=60.83 Aligned_cols=64 Identities=31% Similarity=0.302 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhhHHHHHHhhHhHhhHHHhhhhhhH
Q 005601 263 ELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARERIMLRETQLRA 326 (688)
Q Consensus 263 ~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYrKLLEgEE~RLkgareri~lretqlra 326 (688)
..+.+|......++....+-+.+-..+.-|.-.++||+.-|.+|=.+|..+-+-+=+|+-=+|+
T Consensus 745 ~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~s 808 (1074)
T KOG0250|consen 745 KKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDKLRS 808 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 3333444444444444444445555555667788999999999999999999999999988887
No 59
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.72 E-value=0.16 Score=61.17 Aligned_cols=228 Identities=19% Similarity=0.235 Sum_probs=114.3
Q ss_pred hhhhhhHHHHHhhhhhhhhhccchhhHHHHHhhHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 40 LQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESV---------SISYLHQLKVLRDMLDAKQKELAEISR 110 (688)
Q Consensus 40 LE~ENsrLr~QIe~~eeti~tltrEvs~IK~~YEsEL~DARklL---------~kk~~~EleELk~~L~kKeKEL~~ae~ 110 (688)
|+.-+.+|+.++++.-+-. .+.++--.+-+.|+.-+|.-. +++|+++++.|+..-..-..-....=.
T Consensus 182 le~kir~LrqElEEK~enl----l~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlm 257 (1195)
T KOG4643|consen 182 LEKKIRTLRQELEEKFENL----LRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLM 257 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhh
Confidence 4555666666666555444 233333334444444444333 777888888887765443322222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH---------HHHHHHhhHHHHHhhhhhhhhchHHHHHHHHHHHHH
Q 005601 111 ISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKV---------TIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQL 181 (688)
Q Consensus 111 ~~~~~Es~indLearLsaa~sdrk~aeeelkelka---------ei~eLe~qLee~RkqLEVDlEN~EakLqqALqeLR~ 181 (688)
-+.-|+.++.+|..--...+.++.=+++++..+++ +|-.|+.+|.+++.++-+|+-.. ++|..-...|+.
T Consensus 258 Ds~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kt-eeL~eEnstLq~ 336 (1195)
T KOG4643|consen 258 DSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKT-EELHEENSTLQV 336 (1195)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHH
Confidence 33346777777776666666666667777665554 45566666666666666555443 233333333333
Q ss_pred HHHHHhhhhhHHHHHHhHH-------HHHH----------------------HHHHHHHHHHHhHHHHHHHHhHHHHHHH
Q 005601 182 ETQEKLKRLSDAASRRELE-------QQEV----------------------INKLQIAEKQSSLQVESLKLKLDETRER 232 (688)
Q Consensus 182 Qa~ee~kr~~Daq~r~nRe-------E~~~----------------------a~kaqEElke~R~RVEsL~sKL~dLe~~ 232 (688)
| +++-+.+|....- +++. ...+-++++.+ -++.+-+|...+++.
T Consensus 337 q-----~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts~ralkllLEnrrlt~tleelqss--s~Ee~~SK~leleke 409 (1195)
T KOG4643|consen 337 Q-----KEQLDGQMELLQIFSENEELENESLQVENEQLTSDRALKLLLENRRLTGTLEELQSS--SYEELISKHLELEKE 409 (1195)
T ss_pred H-----HHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHhhh--hHHHHHHHHHHHHHH
Confidence 3 1112222221111 1111 12222333322 567777777777776
Q ss_pred hhhhHHHHHHHHHHHHH-------HHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 233 LVTSDNKVRLLETQVCK-------EQNVSASWKKRVEELENEIKKLREELESEK 279 (688)
Q Consensus 233 n~ale~RIReLE~qL~~-------Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL 279 (688)
.-.+..+++.||.-+.. =++.+-+...+.+.+..++.-.+.-|..|.
T Consensus 410 ~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~ 463 (1195)
T KOG4643|consen 410 HKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQS 463 (1195)
T ss_pred hHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 66666666666654433 333333334444444444444444444443
No 60
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.70 E-value=0.069 Score=59.03 Aligned_cols=73 Identities=18% Similarity=0.269 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhh
Q 005601 89 HQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLR 161 (688)
Q Consensus 89 ~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqL 161 (688)
.+++..+..++++.+.+.........++..+++++..+++....++.....++.+.+.|+.+.+.|..++.|.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4677888888888888888888888888888888888888888888888888888888888888887777776
No 61
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.65 E-value=0.16 Score=58.42 Aligned_cols=232 Identities=17% Similarity=0.199 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHH------HHHHHHHHHHHHHHhHHHHHHHH
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRIS-----------------AEQKH------EMEDLNDRLSASMQSCTEANEIM 140 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~~-----------------~~~Es------~indLearLsaa~sdrk~aeeel 140 (688)
+|-|..|.+-|.++-+-.+..+-.+-..+ ..++. .++.--..++..+++.+..+-.+
T Consensus 68 lK~yQ~EiD~LtkRsk~aE~afl~vye~L~eaPDP~pll~sa~~~l~k~~~~~~e~~~lk~~lee~~~el~~~k~qq~~v 147 (629)
T KOG0963|consen 68 LKSYQSEIDNLTKRSKFAEAAFLDVYEKLIEAPDPVPLLASAAELLNKQQKASEENEELKEELEEVNNELADLKTQQVTV 147 (629)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhCCCCchHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 78888888888887776665543322221 11111 11112223445555666666666
Q ss_pred HHhHHHHHHHHhhHHHHHhhhh--------hhhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhH--------HHHHH
Q 005601 141 KSQKVTIDELKTQLDEERNLRR--------VDRENAEADLKAAVQKSQLETQEKLKRLSDAASRREL--------EQQEV 204 (688)
Q Consensus 141 kelkaei~eLe~qLee~RkqLE--------VDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nR--------eE~~~ 204 (688)
..++..+++++..+...-++.- .+..++++.|+.-.+.+.+|.+ .++.-++.+- +.-..
T Consensus 148 ~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~-----~le~ki~~lq~a~~~t~~el~~~ 222 (629)
T KOG0963|consen 148 RNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLE-----ELEKKISSLQSAIEDTQNELFDL 222 (629)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhhHHHHH
Confidence 6666666666666654444211 3333336666666666666622 2333443331 11222
Q ss_pred HHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhh--------hHHHHHHHHHHHHHHHHHHHHH
Q 005601 205 INKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVS--------ASWKKRVEELENEIKKLREELE 276 (688)
Q Consensus 205 a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s--------~~~~k~l~~lE~Ei~rLR~EMe 276 (688)
-++..++.--.-..|--+.+.|++.++++++++.++-.|..|+...-... ......+..+|++|.+|-.+++
T Consensus 223 ~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~ 302 (629)
T KOG0963|consen 223 KSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIE 302 (629)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHH
Confidence 23335556666677888999999999999999999999999995432221 1223456779999999999999
Q ss_pred HHHHHHHHHHH----HHHhhhHhHHHHHhhhHHHHHHhhHhHhhHHHhhhhhhHhhccHHHHH
Q 005601 277 SEKAAREVAWA----KVSGLELDILAATRDLDFERRRLKAARERIMLRETQLRAFYSTTEEIS 335 (688)
Q Consensus 277 ~QL~EYQdLmD----iKvaLDlEIaAYrKLLEgEE~RLkgareri~lretqlrafystteeis 335 (688)
+.-+....++. -..+|+-+..+|+.-|+-=+ ++|-+| |--++|-
T Consensus 303 ~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~--------------~kL~~~-sDYeeIK 350 (629)
T KOG0963|consen 303 RLEASLVEEREKHKAQISALEKELKAKISELEELK--------------EKLNSR-SDYEEIK 350 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHhhh-ccHHHHH
Confidence 88877766664 45678888888877766433 344444 7777774
No 62
>PF13514 AAA_27: AAA domain
Probab=97.65 E-value=0.18 Score=60.73 Aligned_cols=63 Identities=24% Similarity=0.255 Sum_probs=29.5
Q ss_pred HhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 215 SSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAR 282 (688)
Q Consensus 215 ~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EY 282 (688)
+...++.|..++..++.++..+..++..++..|..-.. ...++.+..++..+..+|.....+|
T Consensus 894 l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~-----~~~~a~l~~e~e~~~a~l~~~~~~~ 956 (1111)
T PF13514_consen 894 LEAELEELEEELEELEEELEELQEERAELEQELEALEG-----DDDAAELEQEREEAEAELEELAEEW 956 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444443211 1234445555555555555555444
No 63
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.64 E-value=0.08 Score=60.83 Aligned_cols=90 Identities=23% Similarity=0.303 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHH----------Hh---------------hhhH
Q 005601 202 QEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKE----------QN---------------VSAS 256 (688)
Q Consensus 202 ~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~E----------r~---------------~s~~ 256 (688)
...+..++-++.+.++.++.+..+|...+..+.++......|.++|..- .. ...+
T Consensus 264 tql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~qls~~~~~~eg~~~~~~~~~ee~~~~~~~ipEd~es 343 (617)
T PF15070_consen 264 TQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQNQQLQAQLSLMALPGEGDGLESESEEEEAPQPMPSIPEDLES 343 (617)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCCcccccccccccccCcCccccccccc
Confidence 3456788888888889999999999999999999999999999999531 11 0111
Q ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005601 257 W-------KKRVEELENEIKKLREELESEKAAREVAWAKVSG 291 (688)
Q Consensus 257 ~-------~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKva 291 (688)
+ ...++..+.|-.+|+.++..+...++.|......
T Consensus 344 ~E~m~~f~~~a~~~~eeEr~~L~~qL~eqk~~~q~L~h~va~ 385 (617)
T PF15070_consen 344 REAMVEFFNSALAQAEEERARLRRQLEEQKVQCQHLAHQVAS 385 (617)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 1 2347777888889999988888877777654443
No 64
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.63 E-value=0.096 Score=62.83 Aligned_cols=145 Identities=16% Similarity=0.167 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh-hhhhch--------
Q 005601 98 LDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR-VDRENA-------- 168 (688)
Q Consensus 98 L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE-VDlEN~-------- 168 (688)
|+.+.......++.-+-+.-.+..|+.+|++.++...++++.-|-+..+.++|.....-.+..+. ..++|-
T Consensus 396 ~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~ 475 (1195)
T KOG4643|consen 396 YEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSL 475 (1195)
T ss_pred HHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHH
Confidence 33333333444444445566677888888888999999999988888888887766655544444 222222
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhHH-------HHHHHHhHHHHHHHhhhhHHHHH
Q 005601 169 EADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQ-------VESLKLKLDETRERLVTSDNKVR 241 (688)
Q Consensus 169 EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaqEElke~R~R-------VEsL~sKL~dLe~~n~ale~RIR 241 (688)
...+.+..-+++.+.+..=|++++.+.-..|-. ...+++.|..+..-.. .+.|..-+.-++..|..|-++|.
T Consensus 476 ~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~-a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~ 554 (1195)
T KOG4643|consen 476 QDQLEAETEELLNQIKNLNKSLNNRDLELSRLH-ALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQ 554 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 445556666777777777777777777777655 2334444444444444 44444444445555555555555
Q ss_pred HH
Q 005601 242 LL 243 (688)
Q Consensus 242 eL 243 (688)
-|
T Consensus 555 ~L 556 (1195)
T KOG4643|consen 555 SL 556 (1195)
T ss_pred HH
Confidence 44
No 65
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.62 E-value=0.21 Score=56.76 Aligned_cols=74 Identities=12% Similarity=0.136 Sum_probs=34.9
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHH
Q 005601 225 KLDETRERLVTSDNKVRLLETQVCK--EQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILA 298 (688)
Q Consensus 225 KL~dLe~~n~ale~RIReLE~qL~~--Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaA 298 (688)
++..+..++..++..+.+|+.+|.. .........+++..++.+|.+++.++.....+...+......|.-+|..
T Consensus 392 ~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (650)
T TIGR03185 392 AKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444432 1122223344555555555555555555555555555544455544443
No 66
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.61 E-value=0.08 Score=58.37 Aligned_cols=216 Identities=18% Similarity=0.190 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhh
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRV 163 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEV 163 (688)
+.+=.-|++++++.|.-+..+|.+++...+..|+.-+....+|..+..+++-+..++..++.++.+..-.|...-+|-
T Consensus 69 lr~gVfqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~-- 146 (499)
T COG4372 69 LRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQA-- 146 (499)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 344456999999999999999999999999999999999999999999999999998888887766555554444332
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHH
Q 005601 164 DRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLL 243 (688)
Q Consensus 164 DlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReL 243 (688)
-+|++-|--|=.| .++.++|.. .++-+-+++..-++-|.++--+|-.+-...+.+-+.
T Consensus 147 ------q~lqtrl~~l~~q-----r~ql~aq~q----------sl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~- 204 (499)
T COG4372 147 ------QDLQTRLKTLAEQ-----RRQLEAQAQ----------SLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQN- 204 (499)
T ss_pred ------HHHHHHHHHHHHH-----HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 2222222222222 001111111 122333333333333333333333332222222222
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhhHHHHHHhhHhHh---hHHHh
Q 005601 244 ETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARE---RIMLR 320 (688)
Q Consensus 244 E~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYrKLLEgEE~RLkgare---ri~lr 320 (688)
-++-+..+..++.|+.++....++--++-+.+=.+...++.+|+|-.-..---|++|+++.- |+---
T Consensus 205 ----------la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqe 274 (499)
T COG4372 205 ----------LATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQE 274 (499)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12335667888899999888888888899999899999999999998888888888888532 22222
Q ss_pred hhhhhHhhccHHH
Q 005601 321 ETQLRAFYSTTEE 333 (688)
Q Consensus 321 etqlrafysttee 333 (688)
=-||-+||-.--+
T Consensus 275 va~le~yyQ~y~~ 287 (499)
T COG4372 275 VAQLEAYYQAYVR 287 (499)
T ss_pred HHHHHHHHHHHHH
Confidence 2467778865544
No 67
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.57 E-value=0.21 Score=61.01 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=11.9
Q ss_pred HHHHHHhHHHHHHHhhhhHHHHHHHHH
Q 005601 219 VESLKLKLDETRERLVTSDNKVRLLET 245 (688)
Q Consensus 219 VEsL~sKL~dLe~~n~ale~RIReLE~ 245 (688)
+..|..++..|+..+.+....++-++.
T Consensus 625 ~~~l~~~i~sL~~~~~~~~~~l~k~~e 651 (1317)
T KOG0612|consen 625 IAELKEEISSLEETLKAGKKELLKVEE 651 (1317)
T ss_pred HHHHHhHHHHHHHHHHhhhhHHHHHHH
Confidence 334444444444444444444444433
No 68
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.57 E-value=0.013 Score=60.37 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=13.8
Q ss_pred hhhhchHHHHHHHHHHHHHH
Q 005601 163 VDRENAEADLKAAVQKSQLE 182 (688)
Q Consensus 163 VDlEN~EakLqqALqeLR~Q 182 (688)
.+++|.-+.+..-|+++|.+
T Consensus 55 e~le~qv~~~e~ei~~~r~r 74 (239)
T COG1579 55 EDLENQVSQLESEIQEIRER 74 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55666667777777777776
No 69
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=97.56 E-value=0.12 Score=57.63 Aligned_cols=288 Identities=17% Similarity=0.137 Sum_probs=149.7
Q ss_pred hhhhhhhHHHHHhhhhhhhhhccchhhHHHH----HhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 39 SLQRSNTELRKQLESQVLEIDKLRNENRVVV----ERHEKEMKEMKESVS---ISYLHQLKVLRDMLDAKQKELAEISRI 111 (688)
Q Consensus 39 ~LE~ENsrLr~QIe~~eeti~tltrEvs~IK----~~YEsEL~DARklL~---kk~~~EleELk~~L~kKeKEL~~ae~~ 111 (688)
.|+.+++.|...+.+....+.+|+.++..++ .... --...++++. +.+.+.+..|...+....+.... .
T Consensus 106 sl~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~-~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~---~ 181 (511)
T PF09787_consen 106 SLSSELAVLKIRLQELDQELRRLRRQLEELQNEKSRILS-DESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAIT---A 181 (511)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHH---H
Confidence 4566888888887777777755555555541 1111 1122344443 33333333444333333333222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh------hhhhchHHHHHHHHHHHHHHHHH
Q 005601 112 SAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR------VDRENAEADLKAAVQKSQLETQE 185 (688)
Q Consensus 112 ~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE------VDlEN~EakLqqALqeLR~Qa~e 185 (688)
+..+-.+...++. +...+..+..|...+.....++.++..+++-++..++ .++.+++++.-++-..+.....+
T Consensus 182 ~~~fl~rtl~~e~-~~~~L~~~~~A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~ 260 (511)
T PF09787_consen 182 VVEFLKRTLKKEI-ERQELEERPKALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKE 260 (511)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 2334444444444 2333444444556666677777777778877777777 33433333333333333333111
Q ss_pred -HhhhhhHHHHH-H-hHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhh----hHHHHHHHHHHHHHHHhhhhHHH
Q 005601 186 -KLKRLSDAASR-R-ELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVT----SDNKVRLLETQVCKEQNVSASWK 258 (688)
Q Consensus 186 -e~kr~~Daq~r-~-nReE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~a----le~RIReLE~qL~~Er~~s~~~~ 258 (688)
-+...++.... . .-+-......++|++..++.+|+.|+..+.+++.+... +....+.|+.++..+... .
T Consensus 261 ~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~----e 336 (511)
T PF09787_consen 261 GCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTT----E 336 (511)
T ss_pred cccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhch----H
Confidence 11111221100 0 11114455667889999999999999999888777554 445556666666555443 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhHhHHHHH---hhhHHHHHHhhHhHhhHHHhhhhhhHhhccH
Q 005601 259 KRVEELENEIKKLREELESEKAAREVAWAKV----SGLELDILAAT---RDLDFERRRLKAARERIMLRETQLRAFYSTT 331 (688)
Q Consensus 259 k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiK----vaLDlEIaAYr---KLLEgEE~RLkgareri~lretqlrafystt 331 (688)
..+..+..|+.-+++++..+....+--+..| ..|=..++|.- .-=+.| .||..-=+.+|-+-|+|-.+=+
T Consensus 337 ~e~~l~~~el~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~~~~~s~~~elE-~rl~~lt~~Li~KQ~~lE~l~~-- 413 (511)
T PF09787_consen 337 AELRLYYQELYHYREELSRQKSPLQLKLKEKESEIQKLRNQLSARASSSSWNELE-SRLTQLTESLIQKQTQLESLGS-- 413 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhccCCcHhHH-HHHhhccHHHHHHHHHHHHHHh--
Confidence 3444555555555555544433333222222 11111222211 122444 8999999999999999997753
Q ss_pred HHHHHHH
Q 005601 332 EEISVLF 338 (688)
Q Consensus 332 eeis~lf 338 (688)
|=.+-.|
T Consensus 414 ek~al~l 420 (511)
T PF09787_consen 414 EKNALRL 420 (511)
T ss_pred hhhhccc
Confidence 5455444
No 70
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.55 E-value=0.023 Score=56.59 Aligned_cols=79 Identities=22% Similarity=0.244 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHhHH--------HHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 005601 202 QEVINKLQIAEKQSSLQ--------VESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLRE 273 (688)
Q Consensus 202 ~~~a~kaqEElke~R~R--------VEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~ 273 (688)
...+.++...++.+.-. .+.|..+|+.++..+...+.+|..||.++.-.-..| ...+...-.....++.
T Consensus 95 ~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~---~rql~~e~kK~~~~~~ 171 (194)
T PF15619_consen 95 DEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSF---RRQLASEKKKHKEAQE 171 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHH
Confidence 45555566666555442 468999999999999999999999999998887777 5555555544444444
Q ss_pred HHHHHHHHHH
Q 005601 274 ELESEKAARE 283 (688)
Q Consensus 274 EMe~QL~EYQ 283 (688)
++..-..+++
T Consensus 172 ~~~~l~~ei~ 181 (194)
T PF15619_consen 172 EVKSLQEEIQ 181 (194)
T ss_pred HHHHHHHHHH
Confidence 4444333333
No 71
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.53 E-value=2e-05 Score=89.41 Aligned_cols=258 Identities=20% Similarity=0.278 Sum_probs=0.0
Q ss_pred CCCCCcchhhhhh--hhhhhhHHHHHhhhhhhhhhccchhhHHHHHhhHHHHHHHHHHH---------HHHHHHHHHHHH
Q 005601 27 SPDGPLSLDDFRS--LQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESV---------SISYLHQLKVLR 95 (688)
Q Consensus 27 ~~~gpislDRVR~--LE~ENsrLr~QIe~~eeti~tltrEvs~IK~~YEsEL~DARklL---------~kk~~~EleELk 95 (688)
+..||.+.-.|+. |.....+|+.++...+... .+.+.-....+.++.++|.-. +..|++|++.|+
T Consensus 229 ~~~~~~~~~~~~~~~l~~ql~~L~~el~~~e~~~----~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR 304 (713)
T PF05622_consen 229 SSEEPSQHLSVELADLRAQLRRLREELERLEEQR----DDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELR 304 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4455655444432 2333444444443333222 233333344556666666555 899999999999
Q ss_pred HHHHHHHH---HHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---hHHHHHHHHhhHHHHHhhhh----
Q 005601 96 DMLDAKQK---ELAEISRI---SAEQKHEMEDLNDRLSASMQSCTEANEIMKS---QKVTIDELKTQLDEERNLRR---- 162 (688)
Q Consensus 96 ~~L~kKeK---EL~~ae~~---~~~~Es~indLearLsaa~sdrk~aeeelke---lkaei~eLe~qLee~RkqLE---- 162 (688)
.+.++..| ++....++ +..|+.++..|+......+..+..++++++. ++.++..+++++.++...+.
T Consensus 305 ~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~ 384 (713)
T PF05622_consen 305 EKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESR 384 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 86655444 44433333 3456778888888888888888888888776 33444444444444443333
Q ss_pred ----hhhhch------------HHHHHHHHHHHHHHHHHHhhhhhHHH-HHHhH--H-----------H------HHHHH
Q 005601 163 ----VDRENA------------EADLKAAVQKSQLETQEKLKRLSDAA-SRREL--E-----------Q------QEVIN 206 (688)
Q Consensus 163 ----VDlEN~------------EakLqqALqeLR~Qa~ee~kr~~Daq-~r~nR--e-----------E------~~~a~ 206 (688)
...++. ...|......||.. .++|. ....+ -...+ . + +..+-
T Consensus 385 ~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~-~eeL~-~~~~~~~~l~~~~~~~~~~~~~l~~El~~~~l~erl~ 462 (713)
T PF05622_consen 385 RADKLEFENKQLEEKLEALEEEKERLQEERDSLRET-NEELE-CSQAQQEQLSQSGEESSSSGDNLSAELNPAELRERLL 462 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhh-hccccccccccccccccccccchhhhccchHHHHHHH
Confidence 111111 12222222223321 12221 11110 00000 0 0 23344
Q ss_pred HHHHHHHHHhHHHHHH-HHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 207 KLQIAEKQSSLQVESL-KLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVA 285 (688)
Q Consensus 207 kaqEElke~R~RVEsL-~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdL 285 (688)
.++-|.+.++..++.+ ..++..|+..+..++.+...||.+... . ..++..++.+|..+++.++.+-..-+++
T Consensus 463 rLe~ENk~Lk~~~e~~~~e~~~~L~~~Leda~~~~~~Le~~~~~----~---~~~~~~lq~qle~lq~~l~~~~~~~~d~ 535 (713)
T PF05622_consen 463 RLEHENKRLKEKQEESEEEKLEELQSQLEDANRRKEKLEEENRE----A---NEKILELQSQLEELQKSLQEQGSKSEDS 535 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH----H---HHHHHHHHHHHHHHHHHHHHHhhhcccH
Confidence 4555556666666666 566677777777777777777766532 2 4667788888888888888887777888
Q ss_pred HHHHHhhhHhHH
Q 005601 286 WAKVSGLELDIL 297 (688)
Q Consensus 286 mDiKvaLDlEIa 297 (688)
+..|..|+..+.
T Consensus 536 ~~lk~~le~~~~ 547 (713)
T PF05622_consen 536 SELKQKLEEHLE 547 (713)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 888877766554
No 72
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.51 E-value=0.28 Score=55.33 Aligned_cols=105 Identities=23% Similarity=0.300 Sum_probs=53.1
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhhHHHHHHhhH
Q 005601 233 LVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKA 312 (688)
Q Consensus 233 n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYrKLLEgEE~RLkg 312 (688)
...++.++..|+.++..-...-.........+..++..+.+++..-..+..++......|--+..-++.-|..=..-|..
T Consensus 350 ~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ 429 (569)
T PRK04778 350 VRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHE 429 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444442222222222334566666666666666666666666666666666665555555443344555
Q ss_pred hHhhHHHh------hhhhhHhhccHHHHHHH
Q 005601 313 ARERIMLR------ETQLRAFYSTTEEISVL 337 (688)
Q Consensus 313 areri~lr------etqlrafystteeis~l 337 (688)
.+.+|..+ +.-+-.|+.+..+|..|
T Consensus 430 ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l 460 (569)
T PRK04778 430 IKRYLEKSNLPGLPEDYLEMFFEVSDEIEAL 460 (569)
T ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 44444433 33344444444444443
No 73
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=97.51 E-value=0.016 Score=66.06 Aligned_cols=115 Identities=11% Similarity=0.074 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHh-HHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 005601 174 AAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLK-LDETRERLVTSDNKVRLLETQVCKEQN 252 (688)
Q Consensus 174 qALqeLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaqEElke~R~RVEsL~sK-L~dLe~~n~ale~RIReLE~qL~~Er~ 252 (688)
..+++||.+.. ++.+.+-+-...|...+-.+-.++.++..++.+|.....+ +..++.....+..+...|+.++..-+.
T Consensus 288 ~~i~~L~~~l~-~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~ 366 (754)
T TIGR01005 288 DLIQRLRERQA-ELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKA 366 (754)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566665511 1211122222334444555555555555555555443222 344556666666677777777766555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005601 253 VSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLE 293 (688)
Q Consensus 253 ~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLD 293 (688)
+. ..+...+.++.+|..+.+.--+-|+.|+...-.+.
T Consensus 367 ~~----~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~ 403 (754)
T TIGR01005 367 AS----AQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQAA 403 (754)
T ss_pred HH----HhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 44566677888888888888888888777654433
No 74
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.51 E-value=0.12 Score=61.94 Aligned_cols=218 Identities=19% Similarity=0.305 Sum_probs=97.3
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHHHHhHHH
Q 005601 74 KEMKEMKESV--SISYLHQLKVLRDMLDAKQKELAEISRISAEQKH-----EMEDLNDRLSASMQSCTEANEIMKSQKVT 146 (688)
Q Consensus 74 sEL~DARklL--~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es-----~indLearLsaa~sdrk~aeeelkelkae 146 (688)
+||.++-+.| +.....-...|+..|+-+.-+|+.+.+++...++ .+..+...|-.+.+.++.....++.-...
T Consensus 691 ~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~ 770 (1174)
T KOG0933|consen 691 KELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDK 770 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444 2222333345666666666666666666554332 12222233333333333333333333334
Q ss_pred HHHHHhhHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHH---HHHHHHHHHHHHHHhHHHHHHH
Q 005601 147 IDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQ---QEVINKLQIAEKQSSLQVESLK 223 (688)
Q Consensus 147 i~eLe~qLee~RkqLEVDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE---~~~a~kaqEElke~R~RVEsL~ 223 (688)
|..|++-+.+..+.++-.+...+..|+.+-|++.+. .-++++.+....+..-+. ...+..++-.+-+....+++|.
T Consensus 771 i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~-~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~ 849 (1174)
T KOG0933|consen 771 ISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEES-SKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLK 849 (1174)
T ss_pred HHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444455555555555544 334444444444433322 4444444444444444444444
Q ss_pred HhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhh
Q 005601 224 LKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDL 303 (688)
Q Consensus 224 sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYrKLL 303 (688)
+++..++..+...+.-+..+..+|..+ ..-++..-.+|...+...+-.+..|....++| +.|
T Consensus 850 ~e~~~l~~kv~~~~~~~~~~~~el~~~--------------k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~----kkl 911 (1174)
T KOG0933|consen 850 SELGNLEAKVDKVEKDVKKAQAELKDQ--------------KAKQRDIDTEISGLLTSQEKCLSEKSDGELER----KKL 911 (1174)
T ss_pred HHHHHHHHHHHhHHhHHHHHHHHHHHH--------------HHHHHhhhHHHhhhhhHHHHHHHHhhcccchH----HHH
Confidence 444444444444444444444333333 33333334444444444444444444444443 344
Q ss_pred HHHHHHh
Q 005601 304 DFERRRL 310 (688)
Q Consensus 304 EgEE~RL 310 (688)
+.|=.||
T Consensus 912 e~e~~~~ 918 (1174)
T KOG0933|consen 912 EHEVTKL 918 (1174)
T ss_pred HhHHHHh
Confidence 4444444
No 75
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.50 E-value=0.31 Score=55.53 Aligned_cols=71 Identities=17% Similarity=0.171 Sum_probs=31.1
Q ss_pred HHhhhhHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHh
Q 005601 231 ERLVTSDNKVRLLETQVCKEQNVS--ASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATR 301 (688)
Q Consensus 231 ~~n~ale~RIReLE~qL~~Er~~s--~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYrK 301 (688)
++...+-+++..||.+|..=...- +.....+..+..++..+.+++..-..+|..+-...-.|.-+|..+.+
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 463 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRK 463 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555554443322211 11123444444444444444444444444444444444444444444
No 76
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.49 E-value=0.17 Score=59.08 Aligned_cols=126 Identities=13% Similarity=0.119 Sum_probs=69.3
Q ss_pred hhhhhhhhhHHHHHhhhhhhhhhccchhhHHHHH----------hhHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Q 005601 37 FRSLQRSNTELRKQLESQVLEIDKLRNENRVVVE----------RHEKEMKEMKESV------SISYLHQLKVLRDMLDA 100 (688)
Q Consensus 37 VR~LE~ENsrLr~QIe~~eeti~tltrEvs~IK~----------~YEsEL~DARklL------~kk~~~EleELk~~L~k 100 (688)
++.|..|-.+|.+++-.+.-.|.+|+.-.+-..+ ..++|+.-++..| -|..++-.+.+++.+..
T Consensus 455 I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~r 534 (961)
T KOG4673|consen 455 INQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTR 534 (961)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777777777766666666555543333222 2334555555544 23333334455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHhHHHHHHHHhhHHHHHhhhh
Q 005601 101 KQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEI-MKSQKVTIDELKTQLDEERNLRR 162 (688)
Q Consensus 101 KeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeee-lkelkaei~eLe~qLee~RkqLE 162 (688)
-.+++...+..+.++++++-.+++-+..|..+..+.+-- -.+++.+-..|--|+.++|--|.
T Consensus 535 q~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~ 597 (961)
T KOG4673|consen 535 QKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLS 597 (961)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666666666644322211 12455555556666666665555
No 77
>PRK09039 hypothetical protein; Validated
Probab=97.49 E-value=0.011 Score=62.80 Aligned_cols=47 Identities=9% Similarity=0.152 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHH
Q 005601 111 ISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEE 157 (688)
Q Consensus 111 ~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~ 157 (688)
.+..++..+.+|+++++..-....-=.....++...|..|+.+|..+
T Consensus 47 ~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a 93 (343)
T PRK09039 47 EISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAA 93 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34445555555555555522222222233344444445555544433
No 78
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.47 E-value=0.2 Score=59.22 Aligned_cols=139 Identities=16% Similarity=0.173 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh-
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR- 162 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE- 162 (688)
..+|+...-.|-..+..++.++..++.+...+|+....|++.++.+..+++.++-+|-++.+++.+|++.|..-+..+-
T Consensus 87 triyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~ 166 (1265)
T KOG0976|consen 87 TRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFM 166 (1265)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHH
Confidence 5667777777777788888888888888888888888888888888888888888888888888888888876666555
Q ss_pred --hhhhch---HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHH--------------HHHHHHHHHHHHHHhHHHHHHH
Q 005601 163 --VDRENA---EADLKAAVQKSQLETQEKLKRLSDAASRRELEQ--------------QEVINKLQIAEKQSSLQVESLK 223 (688)
Q Consensus 163 --VDlEN~---EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE--------------~~~a~kaqEElke~R~RVEsL~ 223 (688)
.+|.|. -..+...++-+=+++. +++++.+.-+.+++++ +.-..+.-++++++..+.+.|.
T Consensus 167 ~~~~L~nk~~~lt~~~~q~~tkl~e~~-~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~lt 245 (1265)
T KOG0976|consen 167 IGEDLHDKNEELNEFNMEFQTKLAEAN-REKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLT 245 (1265)
T ss_pred HHHHHhhhhhHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Confidence 777777 1222222222222322 2244444444555444 3333344556666666655543
No 79
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.47 E-value=0.21 Score=56.92 Aligned_cols=157 Identities=16% Similarity=0.279 Sum_probs=107.1
Q ss_pred CCCCCCcchhhhhhhhhhhhHHHHHhhhhhhhhhccchhhHHHHHhhHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 005601 26 CSPDGPLSLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESV-------SISYLHQLKVLRDML 98 (688)
Q Consensus 26 g~~~gpislDRVR~LE~ENsrLr~QIe~~eeti~tltrEvs~IK~~YEsEL~DARklL-------~kk~~~EleELk~~L 98 (688)
+.|--||-..|.|- =.+-..|.-+|-.+-+.|--|-.|.+. -+.+|..+|... -..|-.|+-.++.-+
T Consensus 27 ~~~as~ir~sR~rE-K~El~~LNDRLA~YIekVR~LEaqN~~----L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l 101 (546)
T KOG0977|consen 27 SNAASPIRDSRERE-KKELQELNDRLAVYIEKVRFLEAQNRK----LEHDINLLRGVVGRETSGIKAKYEAELATARKLL 101 (546)
T ss_pred ccchhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHH
Confidence 33444555555542 123344455555666677444444444 467888888887 667889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhh---hh---hhhhchHHHH
Q 005601 99 DAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNL---RR---VDRENAEADL 172 (688)
Q Consensus 99 ~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~Rkq---LE---VDlEN~EakL 172 (688)
+.-.++...++..+..++..+++|..+|.-+...+..+.+.+.....-++.|+..+.-++-. ++ .+|-.--+.|
T Consensus 102 ~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl 181 (546)
T KOG0977|consen 102 DETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRL 181 (546)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999998888888888887777777777666544332 22 1122225566
Q ss_pred HHHHHHHHHHHHHHh
Q 005601 173 KAAVQKSQLETQEKL 187 (688)
Q Consensus 173 qqALqeLR~Qa~ee~ 187 (688)
...|+.+|.+...|+
T Consensus 182 ~~~l~~~r~~ld~Et 196 (546)
T KOG0977|consen 182 REELARARKQLDDET 196 (546)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666644443
No 80
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.44 E-value=0.46 Score=58.15 Aligned_cols=211 Identities=19% Similarity=0.238 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh--hhhhchHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 005601 117 HEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR--VDRENAEADLKAAVQKSQLETQEKLKRLSDAA 194 (688)
Q Consensus 117 s~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE--VDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq 194 (688)
.+|..|-..|+.+.++....+.+|...+..|++.+..+.++++-.+ .++..+....++||++-..
T Consensus 1511 eqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~------------- 1577 (1758)
T KOG0994|consen 1511 EQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADV------------- 1577 (1758)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 4678888999999999999999999999999999998888887666 4444445555555544321
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 005601 195 SRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREE 274 (688)
Q Consensus 195 ~r~nReE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~E 274 (688)
.+-.-+.+|..+-..++.++-.|+.........+..+.....++++||..|+.-+...+-+.......+...-
T Consensus 1578 --Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~----- 1650 (1758)
T KOG0994|consen 1578 --AQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAG----- 1650 (1758)
T ss_pred --HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH-----
Confidence 1222245555566666777777777777788888888888888999988888777666333222222221111
Q ss_pred HHHHHHHHHHHHHHHHhhh---HhHHHHHhhhHHHHHHhhHhHhhHHHhhhhhhHhhccHHHHHHHHHHHHHHHHHHHhh
Q 005601 275 LESEKAAREVAWAKVSGLE---LDILAATRDLDFERRRLKAARERIMLRETQLRAFYSTTEEISVLFARQQEQLKAMQKT 351 (688)
Q Consensus 275 Me~QL~EYQdLmDiKvaLD---lEIaAYrKLLEgEE~RLkgareri~lretqlrafystteeis~lfakqqeqlkaMQrT 351 (688)
.+.+.+|+.+-.|+ --..+...||+-==++-.+||+|+ -||| +|-+.||..-|+.|+-|+-.
T Consensus 1651 -----sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rA----e~L~------~eA~~Ll~~a~~kl~~l~dL 1715 (1758)
T KOG0994|consen 1651 -----SAKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERA----EQLR------TEAEKLLGQANEKLDRLKDL 1715 (1758)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH----HHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 11111222222222 222334456655556667899987 2454 46788888888776655421
Q ss_pred hcccccccCccccc
Q 005601 352 LEDEENYENTSVDI 365 (688)
Q Consensus 352 LeDeeNyent~~~~ 365 (688)
+--|+++.+-+
T Consensus 1716 ---e~~y~~~~~~L 1726 (1758)
T KOG0994|consen 1716 ---ELEYLRNEQAL 1726 (1758)
T ss_pred ---HHHHhhhhHHH
Confidence 12355665543
No 81
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.44 E-value=0.63 Score=57.70 Aligned_cols=67 Identities=10% Similarity=0.150 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhchHHHHHHHHHHHHHH
Q 005601 116 KHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLE 182 (688)
Q Consensus 116 Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~EakLqqALqeLR~Q 182 (688)
...+..+..++..+...+..+..++..+...+..|+.+++.+++.++.=...-..+.++.|.+++.+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~q 341 (1353)
T TIGR02680 275 QTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARAD 341 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 3344444444444444445555555555555555555555555555432333344455555555444
No 82
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.43 E-value=0.15 Score=60.35 Aligned_cols=163 Identities=12% Similarity=0.096 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHhHHHHHHHHhhHHHHHh
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQS----CTEANEIMKSQKVTIDELKTQLDEERN 159 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sd----rk~aeeelkelkaei~eLe~qLee~Rk 159 (688)
++-+.+--.+|+.+-....+++.+-+-.++.+.--+.+|..--.+|.++ ++=+..+++.++.+++-++-.|-++|-
T Consensus 265 ak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarr 344 (1265)
T KOG0976|consen 265 AKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARR 344 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566777777777888887778888877777777776666654 455677888888888888888877777
Q ss_pred hhh------hhhhch-----------------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHH--------------H
Q 005601 160 LRR------VDRENA-----------------EADLKAAVQKSQLETQEKLKRLSDAASRRELEQ--------------Q 202 (688)
Q Consensus 160 qLE------VDlEN~-----------------EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE--------------~ 202 (688)
.++ .|||+. ...+.|+|-+++++.| +||...+.- +
T Consensus 345 k~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerq--------eQidelKn~if~~e~~~~dhe~~k 416 (1265)
T KOG0976|consen 345 KAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQ--------EQIDELKNHIFRLEQGKKDHEAAK 416 (1265)
T ss_pred hhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhhhhhhccchhHHHH
Confidence 776 566655 3334444444444422 222222111 4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHHHH--------------HHhhhhHHHHHHHHHHHHHHHhhh
Q 005601 203 EVINKLQIAEKQSSLQVESLKLKLDETR--------------ERLVTSDNKVRLLETQVCKEQNVS 254 (688)
Q Consensus 203 ~~a~kaqEElke~R~RVEsL~sKL~dLe--------------~~n~ale~RIReLE~qL~~Er~~s 254 (688)
+....+.|-+-.+..-.-.+-+|++..+ .+-.-+-+|||.|+.+++..|-+-
T Consensus 417 neL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle~qrKVe 482 (1265)
T KOG0976|consen 417 NELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLEKQRKVE 482 (1265)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChhhhcchH
Confidence 4455555555555555555555554332 222345578999999888776554
No 83
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.38 E-value=0.46 Score=54.81 Aligned_cols=127 Identities=24% Similarity=0.231 Sum_probs=62.4
Q ss_pred HHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhh--------------hhHHHHHHHHHHHHHHHHHHH-------HHHHH
Q 005601 221 SLKLKLDETRERLVTSDNKVRLLETQVCKEQNV--------------SASWKKRVEELENEIKKLREE-------LESEK 279 (688)
Q Consensus 221 sL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~--------------s~~~~k~l~~lE~Ei~rLR~E-------Me~QL 279 (688)
.|..+|.+|+...+.+.+..-+|...|+.|+-+ -.++...+..++.|+..|+.+ |++-.
T Consensus 164 eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~ 243 (617)
T PF15070_consen 164 ELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYV 243 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555544444444444333 333444555555566555442 33444
Q ss_pred HHHHHHHHHHHhhhHhHHH---HHhhhHHHHHHhhHhHhhHHHhhhhhhHhhccHHHHHHHHHHHHHHHHHHHhhhcc
Q 005601 280 AAREVAWAKVSGLELDILA---ATRDLDFERRRLKAARERIMLRETQLRAFYSTTEEISVLFARQQEQLKAMQKTLED 354 (688)
Q Consensus 280 ~EYQdLmDiKvaLDlEIaA---YrKLLEgEE~RLkgareri~lretqlrafystteeis~lfakqqeqlkaMQrTLeD 354 (688)
++||.|-.-|-+|-.++-- ..--|--+|.+-+-+-|..+ .+| ..+.|=-..-..|-+||++.-+.+--
T Consensus 244 a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~---~EL----q~~qe~Lea~~qqNqqL~~qls~~~~ 314 (617)
T PF15070_consen 244 AAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAH---QEL----QEAQEHLEALSQQNQQLQAQLSLMAL 314 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH---HHH----HHHHHHHHHHHhhhHHHHHHHHhhcC
Confidence 5666666666666555321 12223344444444433322 222 12233334557888999987765443
No 84
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.34 E-value=0.066 Score=54.02 Aligned_cols=44 Identities=11% Similarity=0.136 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhh
Q 005601 110 RISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQ 153 (688)
Q Consensus 110 ~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~q 153 (688)
..+.++.+.+..|++......+.++.++.+.+.+.++|..|..+
T Consensus 67 eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqee 110 (193)
T PF14662_consen 67 EELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEE 110 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555556666666666666655555433
No 85
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.31 E-value=0.16 Score=59.20 Aligned_cols=190 Identities=18% Similarity=0.248 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhch---HHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 005601 121 DLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENA---EADLKAAVQKSQLETQEKLKRLSDAASRR 197 (688)
Q Consensus 121 dLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~---EakLqqALqeLR~Qa~ee~kr~~Daq~r~ 197 (688)
+|...++...+.-+.+..+|..++.+.+.|+.-+..+-+.++.|+.+- |-+|++ .++.|.. -|+|+..
T Consensus 443 ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~e-E~~~R~~--------lEkQL~e 513 (697)
T PF09726_consen 443 ELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAE-ERRQRAS--------LEKQLQE 513 (697)
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--------HHHHHHH
Confidence 344444444455555666666666666666666666666666555443 333321 2233333 5555555
Q ss_pred hHHHHH--HHHHHH---------HHHH-HHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 005601 198 ELEQQE--VINKLQ---------IAEK-QSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELE 265 (688)
Q Consensus 198 nReE~~--~a~kaq---------EElk-e~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE 265 (688)
.|..+. ...+++ .|-. ..|.|+..|...|..|+..+-..+.+++.||..++.-|.-..-..+..+.|-
T Consensus 514 Erk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~ 593 (697)
T PF09726_consen 514 ERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLM 593 (697)
T ss_pred HHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 554411 112222 1333 3677888899999999999999999999999887433332100123344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhhHHHHHHhh--------HhHhhHHHhhhhhhHhhccHHHHHHH
Q 005601 266 NEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLK--------AARERIMLRETQLRAFYSTTEEISVL 337 (688)
Q Consensus 266 ~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYrKLLEgEE~RLk--------gareri~lretqlrafystteeis~l 337 (688)
..|.-|| |+..-|+-=++| | .|+| .||--|=+++-|||. ---||-.|
T Consensus 594 ~aL~amq--------------dk~~~LE~sLsa-------E-triKldLfsaLg~akrq~ei~~~~~~~---~d~ei~~l 648 (697)
T PF09726_consen 594 SALSAMQ--------------DKNQHLENSLSA-------E-TRIKLDLFSALGDAKRQLEIAQGQLRK---KDKEIEEL 648 (697)
T ss_pred HHHHHHH--------------HHHHHHHHhhhH-------H-HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 4444444 444444433333 3 5544 578778777877764 34466666
Q ss_pred HHHHHHH
Q 005601 338 FARQQEQ 344 (688)
Q Consensus 338 fakqqeq 344 (688)
=+|=-+=
T Consensus 649 k~ki~~~ 655 (697)
T PF09726_consen 649 KAKIAQL 655 (697)
T ss_pred HHHHHHH
Confidence 5554433
No 86
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=97.29 E-value=0.25 Score=49.96 Aligned_cols=189 Identities=22% Similarity=0.314 Sum_probs=104.3
Q ss_pred HHhHHHHHHHHhhHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhHHHH
Q 005601 141 KSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVE 220 (688)
Q Consensus 141 kelkaei~eLe~qLee~RkqLEVDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaqEElke~R~RVE 220 (688)
..+.-.+..+...|+...++++..-+.+=..++.++..|....+.|.||--++.-...+.=...++.+++.+..
T Consensus 8 ~~i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~------ 81 (247)
T PF06705_consen 8 ASINERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVEN------ 81 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 33444444555555555555555555556666667777766666666665554444444333333333322221
Q ss_pred HHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHH
Q 005601 221 SLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSAS-WKKRVEELENEIKKLREELESEKAARE------------VAWA 287 (688)
Q Consensus 221 sL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~-~~k~l~~lE~Ei~rLR~EMe~QL~EYQ------------dLmD 287 (688)
.+..+...+...+..+..||..|+..+..|+..... .......+..+|..|..-++.+...++ ..+-
T Consensus 82 ~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~ 161 (247)
T PF06705_consen 82 QISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKRLEEEENR 161 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233456666677777778888888888877776622 223333466677777777776666653 2334
Q ss_pred HHHhhhHhHHHHHhhhHHHHHHhhHhHhhHHHhhhhhhHhhccHHHHHHH
Q 005601 288 KVSGLELDILAATRDLDFERRRLKAARERIMLRETQLRAFYSTTEEISVL 337 (688)
Q Consensus 288 iKvaLDlEIaAYrKLLEgEE~RLkgareri~lretqlrafystteeis~l 337 (688)
+...++-|......-+..=..-+.....+..--+-+++.| +.+||..|
T Consensus 162 l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~--v~~Ei~~l 209 (247)
T PF06705_consen 162 LQEKIEKEKNTRESKLSELRSELEEVKRRREKGDEQFQNF--VLEEIAAL 209 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHH
Confidence 4455555555444443333333444444444555566655 46777665
No 87
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=97.29 E-value=0.25 Score=50.15 Aligned_cols=181 Identities=19% Similarity=0.204 Sum_probs=114.0
Q ss_pred hhhhhhHHHHHhhhhhhhhhccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 40 LQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEM 119 (688)
Q Consensus 40 LE~ENsrLr~QIe~~eeti~tltrEvs~IK~~YEsEL~DARklL~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~i 119 (688)
.|.++..|+.+++...... .+...|..-||.-+..+ +.-..-+.......+.+..++..++..-+..++..|
T Consensus 21 ~E~e~~~l~~k~~e~~~~~----~~m~~i~~e~Ek~i~~~----i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sf 92 (207)
T PF05010_consen 21 KEEEEQELKKKYEELHKEN----QEMRKIMEEYEKTIAQM----IEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSF 92 (207)
T ss_pred hHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHH----HHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhH
Confidence 3456788888888877777 68888888888866552 222223344445566777777777777777778888
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhH
Q 005601 120 EDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRREL 199 (688)
Q Consensus 120 ndLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nR 199 (688)
.+|-.||.-... .+...+.+-..|++++.+....+. +..+-.+.|+.-|.+.|......--+..+
T Consensus 93 sdl~~ryek~K~-------vi~~~k~NEE~Lkk~~~ey~~~l~--------~~eqry~aLK~hAeekL~~ANeei~~v~~ 157 (207)
T PF05010_consen 93 SDLHKRYEKQKE-------VIEGYKKNEETLKKCIEEYEERLK--------KEEQRYQALKAHAEEKLEKANEEIAQVRS 157 (207)
T ss_pred HHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877777766555 566666666666666665544443 22344445555544444444443333334
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHH
Q 005601 200 EQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLL 243 (688)
Q Consensus 200 eE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReL 243 (688)
.-...+.+++-.+|...++|.+|...|.--...|.-|-.=|-+|
T Consensus 158 ~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeL 201 (207)
T PF05010_consen 158 KHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDEL 201 (207)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666667777777777777777777776666666655555444
No 88
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.29 E-value=0.67 Score=54.77 Aligned_cols=75 Identities=19% Similarity=0.293 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh
Q 005601 87 YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR 162 (688)
Q Consensus 87 ~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE 162 (688)
+...+.++...+...+..+...........-..+.+.. +......+..+.+.++.+...+.++..++..++..++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 346 (908)
T COG0419 272 REEELRELERLLEELEEKIERLEELEREIEELEEELEG-LRALLEELEELLEKLKSLEERLEKLEEKLEKLESELE 346 (908)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444433333333333322222222322 5566667777777777777777777777766665555
No 89
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.29 E-value=0.5 Score=53.30 Aligned_cols=101 Identities=18% Similarity=0.205 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 202 QEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAA 281 (688)
Q Consensus 202 ~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~E 281 (688)
...+..+++.+......|..| +|...+..+..+..+|-.|-..|..|-.......+....+..-|..++++...-+.+
T Consensus 255 ~~~i~~l~~~i~~~~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~E 332 (569)
T PRK04778 255 EKEIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEE 332 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888888887 788999999999999999999999998888777777777777777777666666555
Q ss_pred HHHHHHH----------HHhhhHhHHHHHhhhH
Q 005601 282 REVAWAK----------VSGLELDILAATRDLD 304 (688)
Q Consensus 282 YQdLmDi----------KvaLDlEIaAYrKLLE 304 (688)
++.+=.- .-+|.-+|....+.+.
T Consensus 333 i~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~ 365 (569)
T PRK04778 333 IDRVKQSYTLNESELESVRQLEKQLESLEKQYD 365 (569)
T ss_pred HHHHHHccccCchhHHHHHHHHHHHHHHHHHHH
Confidence 5554222 4445555555444444
No 90
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=97.25 E-value=0.4 Score=51.50 Aligned_cols=152 Identities=24% Similarity=0.287 Sum_probs=91.8
Q ss_pred chhhhhhhhhhhhHHHHHhhhhhhhhhccchhhHHHHHhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 005601 33 SLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEM---KESVSISYLHQLKVLRDMLDAKQKELAEI- 108 (688)
Q Consensus 33 slDRVR~LE~ENsrLr~QIe~~eeti~tltrEvs~IK~~YEsEL~DA---RklL~kk~~~EleELk~~L~kKeKEL~~a- 108 (688)
-..+|-+|+++|..|+.++.....-+..|..|+..|+...-.=-.-| =+.|+.+ |-++|....|+-...
T Consensus 25 l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~-------LlKkl~~l~keKe~L~ 97 (310)
T PF09755_consen 25 LRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNT-------LLKKLQQLKKEKETLA 97 (310)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 35678899999999999988887777666666655554432200000 0111111 222223222322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hHHHHHHHHhhHHHHHh----------hhh---hhhhch------
Q 005601 109 SRISAEQKHEMEDLNDRLSASMQSCTEANEIMKS-QKVTIDELKTQLDEERN----------LRR---VDRENA------ 168 (688)
Q Consensus 109 e~~~~~~Es~indLearLsaa~sdrk~aeeelke-lkaei~eLe~qLee~Rk----------qLE---VDlEN~------ 168 (688)
..--++=|...|.|..+|++....+..++..+.. +...+.+|.+++..+++ +|. ||+||+
T Consensus 98 ~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE 177 (310)
T PF09755_consen 98 LKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQE 177 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHH
Confidence 2233444667799999999999999999888764 66666777777766654 333 899998
Q ss_pred --HHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 005601 169 --EADLKAAVQKSQLETQEKLKRLSDAASR 196 (688)
Q Consensus 169 --EakLqqALqeLR~Qa~ee~kr~~Daq~r 196 (688)
-++|.-.+..|-.+ ||...+.+.
T Consensus 178 ~lvN~L~Kqm~~l~~e-----Kr~Lq~~l~ 202 (310)
T PF09755_consen 178 ALVNRLWKQMDKLEAE-----KRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHc
Confidence 45666666666555 555444443
No 91
>PRK11281 hypothetical protein; Provisional
Probab=97.19 E-value=0.77 Score=56.28 Aligned_cols=78 Identities=14% Similarity=0.170 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHH
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHE-------------MEDLNDRLSASMQSCTEANEIMKSQKVTIDEL 150 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~-------------indLearLsaa~sdrk~aeeelkelkaei~eL 150 (688)
+.+.+.+++.|++++....+++..+++....+... +..|+++|++..+....+...+....+++..+
T Consensus 75 i~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~ 154 (1113)
T PRK11281 75 IDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSL 154 (1113)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56666666667766666666666666665554431 23455555555554444555555554444444
Q ss_pred HhhHHHHHhhh
Q 005601 151 KTQLDEERNLR 161 (688)
Q Consensus 151 e~qLee~RkqL 161 (688)
..+.+.+++.+
T Consensus 155 qT~PERAQ~~l 165 (1113)
T PRK11281 155 QTQPERAQAAL 165 (1113)
T ss_pred hcchHHHHHHH
Confidence 44444444443
No 92
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.18 E-value=0.83 Score=53.77 Aligned_cols=289 Identities=18% Similarity=0.174 Sum_probs=175.1
Q ss_pred cchhhHHHHHhhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005601 61 LRNENRVVVERHEKEMKEMKESV------SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCT 134 (688)
Q Consensus 61 ltrEvs~IK~~YEsEL~DARklL------~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk 134 (688)
|-.|..+-.+-|-..|.++..-| +.+...|++.|........+++..++.....+...+.++-.|=.-.+++..
T Consensus 21 Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dys 100 (717)
T PF09730_consen 21 LLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYS 100 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 35555555555655555544443 678888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhHHHHHHHHhh-----------------HHHHHhhhh--hhh-hchHHHHHHHHHHHHHHH--HHHhhhhhH
Q 005601 135 EANEIMKSQKVTIDELKTQ-----------------LDEERNLRR--VDR-ENAEADLKAAVQKSQLET--QEKLKRLSD 192 (688)
Q Consensus 135 ~aeeelkelkaei~eLe~q-----------------Lee~RkqLE--VDl-EN~EakLqqALqeLR~Qa--~ee~kr~~D 192 (688)
+|++++-+|.+++.-|+.. .+.++.||+ .-| +=++..|-.||.-|+.|- .-.|||-.+
T Consensus 101 elEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL~ 180 (717)
T PF09730_consen 101 ELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKELD 180 (717)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888777766542 222222222 000 011777888887777661 122333333
Q ss_pred HHHHHhH----------------------------H-H------------------------------------------
Q 005601 193 AASRREL----------------------------E-Q------------------------------------------ 201 (688)
Q Consensus 193 aq~r~nR----------------------------e-E------------------------------------------ 201 (688)
..+...- + +
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lv~DLfS 260 (717)
T PF09730_consen 181 QHLNIESISYLSNLAISLDGLKFSEDPRAATEPNNDDEEENGGLNGGPGLAKGNGDNRMSTPRKSESFSPAPSLVSDLFS 260 (717)
T ss_pred HhcCccccccccchhhcccccccccccccccCCCCchhhhcchhhccchhcccccccccCCCCCCCCCCCCCcccchhhh
Confidence 3221110 0 0
Q ss_pred ---HHHHHHHHHHHHHH-------hHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhh------------------
Q 005601 202 ---QEVINKLQIAEKQS-------SLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNV------------------ 253 (688)
Q Consensus 202 ---~~~a~kaqEElke~-------R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~------------------ 253 (688)
-..|.|++..+.+. ...+..+..+|...+..++....||..|-.+|..-+..
T Consensus 261 El~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s 340 (717)
T PF09730_consen 261 ELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDS 340 (717)
T ss_pred hcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhccccccc
Confidence 23444555444443 23333444444444444455556666666655333321
Q ss_pred --------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhhHHHHHHhhHh
Q 005601 254 --------------------SASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAA 313 (688)
Q Consensus 254 --------------------s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYrKLLEgEE~RLkga 313 (688)
+..+...+..+..+|..||.++..-..-|.+. +..++-++..+..-|..-+...+..
T Consensus 341 ~~d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~e---k~~~~~e~q~L~ekl~~lek~~re~ 417 (717)
T PF09730_consen 341 HEDGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQE---KDRLESEVQNLKEKLMSLEKSSRED 417 (717)
T ss_pred ccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 11111223344444555554444444444443 3466777888877777778888888
Q ss_pred HhhHHHhhhhhhHhhccHHHHHHHHHHHHHHHHHHHhhh
Q 005601 314 RERIMLRETQLRAFYSTTEEISVLFARQQEQLKAMQKTL 352 (688)
Q Consensus 314 reri~lretqlrafystteeis~lfakqqeqlkaMQrTL 352 (688)
++||.-=|..||+-=.++-+-..-.+.=|+.|.++...|
T Consensus 418 qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeL 456 (717)
T PF09730_consen 418 QERISELEKELRALSKLAGESQGSLNSAQDELVTFSEEL 456 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988887777766667777777766555
No 93
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.11 Score=61.09 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=45.1
Q ss_pred HHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 005601 222 LKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREE---LESEKAAREVAW 286 (688)
Q Consensus 222 L~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~E---Me~QL~EYQdLm 286 (688)
|+.++..|+..+.+|+.++..|+.-|++-|..-.+....++.....+..++-| ++++++|||.-+
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl 502 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKL 502 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777778888888888888888888888877767677777666555555443 445556665544
No 94
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.14 E-value=0.88 Score=53.33 Aligned_cols=110 Identities=16% Similarity=0.225 Sum_probs=70.0
Q ss_pred hhhhhhhhhhHHHHHhhhhhhhhhccchhhHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 36 DFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESV--SISYLHQLKVLRDMLDAKQKELAEISRISA 113 (688)
Q Consensus 36 RVR~LE~ENsrLr~QIe~~eeti~tltrEvs~IK~~YEsEL~DARklL--~kk~~~EleELk~~L~kKeKEL~~ae~~~~ 113 (688)
|+..+|-.-.-|+.+++..-..+ -|++-.+.--|-+|..+++.| -.+++++-+.+..-.+..+.-=...-+.+.
T Consensus 371 r~~~~ed~lk~l~~eLqkks~el----eEmtk~k~~ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq 446 (786)
T PF05483_consen 371 RLKKNEDQLKILTMELQKKSSEL----EEMTKQKNNKEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQ 446 (786)
T ss_pred HHHHhHHHHHHHHHHHHHhhHHH----HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666554444 455555666666788888888 334555555544444443333333445577
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHH
Q 005601 114 EQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDE 149 (688)
Q Consensus 114 ~~Es~indLearLsaa~sdrk~aeeelkelkaei~e 149 (688)
.-+..+++|+..|+++..+...--..+.+++.++..
T Consensus 447 ~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~ 482 (786)
T PF05483_consen 447 IREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQ 482 (786)
T ss_pred hhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 778889999999999988877777777777766553
No 95
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=97.14 E-value=0.15 Score=55.41 Aligned_cols=150 Identities=17% Similarity=0.146 Sum_probs=89.8
Q ss_pred HHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHH
Q 005601 130 MQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQ 209 (688)
Q Consensus 130 ~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaq 209 (688)
.+...-++.+++.++.++.+.+..|..-|..-.+.+......+.+.|..++.+ ...++
T Consensus 160 ~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~----------------------l~~~~ 217 (498)
T TIGR03007 160 DSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEE----------------------LEAAR 217 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHH----------------------HHHHH
Confidence 34455556666666666666666666555332222222222233333333333 23334
Q ss_pred HHHHHHhHHHHHHHHhHHHHH--------HHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 210 IAEKQSSLQVESLKLKLDETR--------ERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAA 281 (688)
Q Consensus 210 EElke~R~RVEsL~sKL~dLe--------~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~E 281 (688)
.++.....++..|+.++.... ..+..+..++.+||.++..-+.+|...+-.+-.+.++|..|+..+..++..
T Consensus 218 ~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~~ 297 (498)
T TIGR03007 218 LELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGSA 297 (498)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhccc
Confidence 444445555555555544211 123466788889999999998888888888999999999999988776532
Q ss_pred --------------HHHHHHHHHhhhHhHHHHHh
Q 005601 282 --------------REVAWAKVSGLELDILAATR 301 (688)
Q Consensus 282 --------------YQdLmDiKvaLDlEIaAYrK 301 (688)
++.|......++.++++...
T Consensus 298 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~ 331 (498)
T TIGR03007 298 KNGGPERGEIANPVYQQLQIELAEAEAEIASLEA 331 (498)
T ss_pred cccCcccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666766666554
No 96
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.14 E-value=0.51 Score=50.57 Aligned_cols=72 Identities=19% Similarity=0.309 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 005601 203 EVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREE 274 (688)
Q Consensus 203 ~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~E 274 (688)
.-++.+..++..+|-.+..=..-|+.++.-+....-++.+||.+.+.|+..--....+-..++..|.+|+-|
T Consensus 158 sK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsE 229 (305)
T PF14915_consen 158 SKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSE 229 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777776666666667788888888889999999999999887633333444455555555544
No 97
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.04 E-value=1.1 Score=52.90 Aligned_cols=19 Identities=26% Similarity=0.193 Sum_probs=11.0
Q ss_pred Hhhhhcc--ChhhHhhcCCCC
Q 005601 600 CEMIGIV--TPELKVQFGGAV 618 (688)
Q Consensus 600 ~~migiv--~p~~k~q~~~~~ 618 (688)
..||||| +|+|+..|+-.+
T Consensus 873 ~~qiiIISH~eel~e~~~~~i 893 (908)
T COG0419 873 GRQIIIISHVEELKERADVRI 893 (908)
T ss_pred CCeEEEEeChHHHHHhCCeEE
Confidence 4466666 466766555443
No 98
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.03 E-value=1.3 Score=53.16 Aligned_cols=102 Identities=13% Similarity=0.144 Sum_probs=51.6
Q ss_pred HhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh------hhhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHH
Q 005601 131 QSCTEANEIMKSQKVTIDELKTQLDEERNLRR------VDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEV 204 (688)
Q Consensus 131 sdrk~aeeelkelkaei~eLe~qLee~RkqLE------VDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE~~~ 204 (688)
+...++.+....+..+=..|...+++-.||++ ++.++....|...|.++..+ .+...+.++.+.+.
T Consensus 424 ~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~--------~~~~~~K~e~~~~~ 495 (980)
T KOG0980|consen 424 NRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRA--------AGRAETKTESQAKA 495 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhHHHHHH
Confidence 33333344444444444555555555555555 34444455566666666555 33334444444555
Q ss_pred HHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHH
Q 005601 205 INKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKV 240 (688)
Q Consensus 205 a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RI 240 (688)
...++-|+.-+--+++.|...++.+.+.-+..-.++
T Consensus 496 le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l 531 (980)
T KOG0980|consen 496 LESLRQELALLLIELEELQRTLSNLAQSHNNQLAQL 531 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 555555555555555555555555554444333333
No 99
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.01 E-value=0.49 Score=57.37 Aligned_cols=201 Identities=19% Similarity=0.170 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh-
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR- 162 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE- 162 (688)
.++++.++-.+-..+..|++.+.. ....-........+..+|.....+...++.....++..|.+|++++...-+-.+
T Consensus 264 ~~ki~re~~~~Dk~i~~ke~~l~e-rp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~ 342 (1141)
T KOG0018|consen 264 RGKIRRELQKVDKKISEKEEKLAE-RPELIKVKENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEE 342 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-hhHHhhcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555 333333344444444566666666666666666666666666666543322222
Q ss_pred --hhhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHH-HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHH
Q 005601 163 --VDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQ-QEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNK 239 (688)
Q Consensus 163 --VDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE-~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~R 239 (688)
.+.++. .+.-++.+. .-+.+++-|-.. .++-..+++++--+...+.+-..-|..+..+...+++|
T Consensus 343 fekei~~~---~q~rg~~ln---------l~d~~~~ey~rlk~ea~~~~~~el~~ln~~~r~~~~~ld~~~~~~~elE~r 410 (1141)
T KOG0018|consen 343 FEKEIEER---SQERGSELN---------LKDDQVEEYERLKEEACKEALEELEVLNRNMRSDQDTLDHELERRAELEAR 410 (1141)
T ss_pred HHHHHHHH---HhhccccCC---------cchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 111111 111111111 112222222222 22222224444444444444445556666666777777
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhhH
Q 005601 240 VRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLD 304 (688)
Q Consensus 240 IReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYrKLLE 304 (688)
+..|+.++ +|.+ +....+..-|+.+....+.++..-..|--..+.+.-++.-+-+-|.
T Consensus 411 ~k~l~~sv--er~~-----~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~ 468 (1141)
T KOG0018|consen 411 IKQLKESV--ERLD-----KRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELV 468 (1141)
T ss_pred HHHHHHHH--HHHH-----HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHH
Confidence 77777766 2222 2233333333444433333333333333334444444444444333
No 100
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=1.4 Score=52.63 Aligned_cols=69 Identities=20% Similarity=0.191 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR 162 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE 162 (688)
+++|+++++....+|....+++ ...+..+..........+++++++++.+..+...|++|++.+|.||.
T Consensus 648 ~~k~~e~l~~~~~kyK~lI~~l----------D~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 648 AEKYHEELDDIQQKYKGLIREL----------DYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6677777776666655544433 34444444555556667778888888888888889999999998888
No 101
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.94 E-value=0.13 Score=49.10 Aligned_cols=36 Identities=19% Similarity=0.200 Sum_probs=15.5
Q ss_pred HHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHH
Q 005601 210 IAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLET 245 (688)
Q Consensus 210 EElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~ 245 (688)
+++-++..++.....||..+..++..++.++..||.
T Consensus 87 eele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~ 122 (143)
T PF12718_consen 87 EELEEAEKKLKETTEKLREADVKAEHFERKVKALEQ 122 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 333333444444444444444444444444444443
No 102
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.92 E-value=1.3 Score=51.40 Aligned_cols=125 Identities=18% Similarity=0.221 Sum_probs=77.6
Q ss_pred hhhhhhhhhhhHHHHHhhhhhhhh---hccchhhHHHHHh---hHHHHHHHHH-------------------HH---HHH
Q 005601 35 DDFRSLQRSNTELRKQLESQVLEI---DKLRNENRVVVER---HEKEMKEMKE-------------------SV---SIS 86 (688)
Q Consensus 35 DRVR~LE~ENsrLr~QIe~~eeti---~tltrEvs~IK~~---YEsEL~DARk-------------------lL---~kk 86 (688)
.+++.-+.||.+|..++++..... .|+...|++++.. |+..+...-+ .| -..
T Consensus 114 ~k~~~~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~ 193 (629)
T KOG0963|consen 114 NKQQKASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQN 193 (629)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466667778888888877655332 1223333333322 2222221111 11 344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHh
Q 005601 87 YLHQLKVLRDMLDAKQKELAEISRISAEQKHE----MEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERN 159 (688)
Q Consensus 87 ~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~----indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~Rk 159 (688)
+.+++..|.++....+..+...++..-++++. ..-+.+.++..+.+...++-.+-.+..++..|+.||...--
T Consensus 194 ~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~ 270 (629)
T KOG0963|consen 194 LQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANS 270 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 55556666666666666666667777777777 77778888888888888888888888888888888765543
No 103
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.91 E-value=0.75 Score=48.58 Aligned_cols=67 Identities=16% Similarity=0.161 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 005601 202 QEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKL 271 (688)
Q Consensus 202 ~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rL 271 (688)
...+...+.++.+++..+..|..+++.+..+...+...|.+++..+..-|..+ ..++..+..++..|
T Consensus 222 ~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t---~~Ev~~Lk~~~~~L 288 (325)
T PF08317_consen 222 KEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWT---RSEVKRLKAKVDAL 288 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHH
Confidence 33444455555566666666666666666666666666666666666555555 44444444444333
No 104
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.84 E-value=1.9 Score=52.17 Aligned_cols=28 Identities=14% Similarity=0.336 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Q 005601 72 HEKEMKEMKESV------SISYLHQLKVLRDMLD 99 (688)
Q Consensus 72 YEsEL~DARklL------~kk~~~EleELk~~L~ 99 (688)
.++||.++|+-. -.+|..++.++....+
T Consensus 281 Lqrel~raR~e~keaqe~ke~~k~emad~ad~iE 314 (1243)
T KOG0971|consen 281 LQRELKRARKEAKEAQEAKERYKEEMADTADAIE 314 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555544 3344444444444333
No 105
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.81 E-value=0.23 Score=49.66 Aligned_cols=103 Identities=18% Similarity=0.198 Sum_probs=68.2
Q ss_pred HHHHHhHHHHHHHHhhHHHHHhhhh-hhhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHh
Q 005601 138 EIMKSQKVTIDELKTQLDEERNLRR-VDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSS 216 (688)
Q Consensus 138 eelkelkaei~eLe~qLee~RkqLE-VDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaqEElke~R 216 (688)
+.|++||.+|+++++.....++.+. +..||. +|...|+.++.+ +...+.+-....+-+..++.++
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~--~L~epL~~a~~e------------~~eL~k~L~~y~kdK~~L~~~k 92 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENK--RLSEPLKKAEEE------------VEELRKQLKNYEKDKQSLQNLK 92 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777766666665 556654 566677666666 2222223233445556677778
Q ss_pred HHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 005601 217 LQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVS 254 (688)
Q Consensus 217 ~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s 254 (688)
.++..+..+|.+|+-....|+.|+..|+...+.=..+|
T Consensus 93 ~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf 130 (201)
T PF13851_consen 93 ARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKF 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888887776665555555
No 106
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.77 E-value=0.77 Score=46.91 Aligned_cols=170 Identities=20% Similarity=0.199 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh-
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR- 162 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE- 162 (688)
+-+..+-+..++.+|...++.....++-.+.++++.-.++.+..+.-...+.+.-+-...-. +.=+++|+..-
T Consensus 20 le~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adr------K~eEVarkL~ii 93 (205)
T KOG1003|consen 20 LDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADR------KYEEVARKLVII 93 (205)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 44455555556666666666666666666666666666665555555544444333222221 12233333322
Q ss_pred -hhhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHH
Q 005601 163 -VDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVR 241 (688)
Q Consensus 163 -VDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIR 241 (688)
-|||-++-+.-.+.-.+ ..+-|+++-+...+.+|+.+-..+..+.-.++..|+
T Consensus 94 E~dLE~~eeraE~~Es~~--------------------------~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik 147 (205)
T KOG1003|consen 94 EGELERAEERAEAAESQS--------------------------EELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELK 147 (205)
T ss_pred HhHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33333332222222221 122233333334444444444444444444444444
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 242 LLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVA 285 (688)
Q Consensus 242 eLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdL 285 (688)
.|-.-|-.--.+...+.+.++.|+.++-+|.+.+......|..+
T Consensus 148 ~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~ 191 (205)
T KOG1003|consen 148 ELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEA 191 (205)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHH
Confidence 44444432222222345667777777777777777666666543
No 107
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.74 E-value=0.33 Score=55.71 Aligned_cols=78 Identities=15% Similarity=0.084 Sum_probs=40.1
Q ss_pred HHHhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhHHH
Q 005601 68 VVERHEKEMKEMKESV----SISYLHQLKVLRDMLDAKQKELAEISRISAE--------QKHEMEDLNDRLSASMQSCTE 135 (688)
Q Consensus 68 IK~~YEsEL~DARklL----~kk~~~EleELk~~L~kKeKEL~~ae~~~~~--------~Es~indLearLsaa~sdrk~ 135 (688)
+-..|-..-.+.|... ..=+..++.+|+.+|...+..+..-...... .+.++.+++.+|..+...+..
T Consensus 176 la~~Y~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~ 255 (754)
T TIGR01005 176 IAAAYIAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAA 255 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHH
Confidence 3445555544444433 2333445666666666666655544332111 125666666666666665555
Q ss_pred HHHHHHHhHH
Q 005601 136 ANEIMKSQKV 145 (688)
Q Consensus 136 aeeelkelka 145 (688)
++.....++.
T Consensus 256 a~a~~~~l~~ 265 (754)
T TIGR01005 256 AEGTADSVKK 265 (754)
T ss_pred HHHHHHHHHH
Confidence 5555444443
No 108
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.74 E-value=1.7 Score=50.12 Aligned_cols=262 Identities=15% Similarity=0.184 Sum_probs=123.9
Q ss_pred hhhhhhhhhhHHHHHhhhhh----------hhhhccchhhH----------HHHHhhHHHHHHHHHHH------HHHHHH
Q 005601 36 DFRSLQRSNTELRKQLESQV----------LEIDKLRNENR----------VVVERHEKEMKEMKESV------SISYLH 89 (688)
Q Consensus 36 RVR~LE~ENsrLr~QIe~~e----------eti~tltrEvs----------~IK~~YEsEL~DARklL------~kk~~~ 89 (688)
.+-.|+..|.+|-.+|.+.+ +.+.+|++.+. +-+..|+..|+.+..-+ +.++..
T Consensus 236 ~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~ 315 (581)
T KOG0995|consen 236 EIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQK 315 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457777777777766433 23333333332 23334444555444444 666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhh-h
Q 005601 90 QLKVLRDMLDAKQKELAEISRIS---AEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVD-R 165 (688)
Q Consensus 90 EleELk~~L~kKeKEL~~ae~~~---~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVD-l 165 (688)
++++|++.+++.----...++-. -.+.--+++++-.+....+...+++.++.+...+|..+-.+|..+...|-.. .
T Consensus 316 ~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~ 395 (581)
T KOG0995|consen 316 ENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIA 395 (581)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667666666532222222222 2223333444444444444444444444444444433333333333333322 3
Q ss_pred hch-----------------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHH------HHHHHHHHHHHHHHhHHHHHH
Q 005601 166 ENA-----------------EADLKAAVQKSQLETQEKLKRLSDAASRRELEQ------QEVINKLQIAEKQSSLQVESL 222 (688)
Q Consensus 166 EN~-----------------EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE------~~~a~kaqEElke~R~RVEsL 222 (688)
+|. .+..+=+|-+++.+.+++| |.+++...-.| .-.|+..+-.+..+..++-.+
T Consensus 396 ~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~---~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~ 472 (581)
T KOG0995|consen 396 ENSKNLERNPERAATNGVDLKSYVKPLLKELLDEISEEL---HEAENELETLQEHFSNKASTIEEKIQILGEIELELKKA 472 (581)
T ss_pred HHhccCCcCCccCccccccchhHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 5556666777777766665 45555544444 223333444444555555555
Q ss_pred HHhHHHHHHHh----hhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHH----HHHHHH-------HHHHHHHH-HHHHHHH
Q 005601 223 KLKLDETRERL----VTSDNKVRLLETQVCKEQNVSASWKKRVEELE----NEIKKL-------REELESEK-AAREVAW 286 (688)
Q Consensus 223 ~sKL~dLe~~n----~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE----~Ei~rL-------R~EMe~QL-~EYQdLm 286 (688)
.++-.-.+..+ .+...-+.-||.+|..+........+..+++. .++.+| |..+.+|| .=|...+
T Consensus 473 ~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m~~a~~~v~s~e~el~~~~~~~~eer~ki~~ql~~~i~~i~ 552 (581)
T KOG0995|consen 473 ESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSMKEAEELVKSIELELDRMVATGEEERQKIAKQLFAVIDQIS 552 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444333333 33344455677777777776633333222222 222222 33333333 2244556
Q ss_pred HHHHhhhHhHHHHH
Q 005601 287 AKVSGLELDILAAT 300 (688)
Q Consensus 287 DiKvaLDlEIaAYr 300 (688)
+.|+..+-.|.--.
T Consensus 553 ~~k~~iqs~le~~k 566 (581)
T KOG0995|consen 553 DFKVSIQSSLENLK 566 (581)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666665554433
No 109
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.67 E-value=0.59 Score=46.86 Aligned_cols=169 Identities=19% Similarity=0.292 Sum_probs=77.6
Q ss_pred hhhhhhhhhhHHHHHhhhhhhhhhccchhhHHHHHhhHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Q 005601 36 DFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESV---------SISYLHQLKVLRDMLDAKQKELA 106 (688)
Q Consensus 36 RVR~LE~ENsrLr~QIe~~eeti~tltrEvs~IK~~YEsEL~DARklL---------~kk~~~EleELk~~L~kKeKEL~ 106 (688)
++..|.-+...|... ++.|..|+..++.++-.-.+.+.+.- +-+..+|...|+..|-+.+....
T Consensus 13 ki~~L~n~l~elq~~-------l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r 85 (194)
T PF15619_consen 13 KIKELQNELAELQRK-------LQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQER 85 (194)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444 33445666666665544333332221 45555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HhHHHHHHHHhhHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHH
Q 005601 107 EISRISAEQKHEMEDLNDRLSASMQSCTEANEIMK-SQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQE 185 (688)
Q Consensus 107 ~ae~~~~~~Es~indLearLsaa~sdrk~aeeelk-elkaei~eLe~qLee~RkqLEVDlEN~EakLqqALqeLR~Qa~e 185 (688)
.+++.+++.+..+..+...+... ..-+. .--.+.++|...|+.+...++ .++.+++.--+.++..
T Consensus 86 ~~~~klk~~~~el~k~~~~l~~L-------~~L~~dknL~eReeL~~kL~~~~~~l~----~~~~ki~~Lek~leL~--- 151 (194)
T PF15619_consen 86 ELERKLKDKDEELLKTKDELKHL-------KKLSEDKNLAEREELQRKLSQLEQKLQ----EKEKKIQELEKQLELE--- 151 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHcCCchhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH---
Confidence 55555544444444333333321 11110 000123333344433333222 1122222222222222
Q ss_pred HhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHH
Q 005601 186 KLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETR 230 (688)
Q Consensus 186 e~kr~~Daq~r~nReE~~~a~kaqEElke~R~RVEsL~sKL~dLe 230 (688)
.....++...+..-+..++.+++.+.+.|..|+.+|-+-+
T Consensus 152 -----~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKe 191 (194)
T PF15619_consen 152 -----NKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKE 191 (194)
T ss_pred -----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444566677777777777777777777776544
No 110
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=96.66 E-value=0.65 Score=49.62 Aligned_cols=91 Identities=9% Similarity=0.039 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHH-hHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005601 198 ELEQQEVINKLQIAEKQSSLQVESLKL-KLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELE 276 (688)
Q Consensus 198 nReE~~~a~kaqEElke~R~RVEsL~s-KL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe 276 (688)
|...+-.+-.++..+..++..+...-. -+..+......+..++..|+.++..-+... ..+...+.++.+|..+.+
T Consensus 277 y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~----~~l~~~~~~~~~L~r~~~ 352 (444)
T TIGR03017 277 LGPNHPQYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKV----LELNRQRDEMSVLQRDVE 352 (444)
T ss_pred hCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444332211 122233444555566666666666443333 345555667777777777
Q ss_pred HHHHHHHHHHHHHHhh
Q 005601 277 SEKAAREVAWAKVSGL 292 (688)
Q Consensus 277 ~QL~EYQdLmDiKvaL 292 (688)
.-..-|..|+...-..
T Consensus 353 ~~~~~y~~ll~r~~e~ 368 (444)
T TIGR03017 353 NAQRAYDAAMQRYTQT 368 (444)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777665443
No 111
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.62 E-value=0.78 Score=49.28 Aligned_cols=42 Identities=19% Similarity=0.200 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDR 125 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLear 125 (688)
-+.++.++..|..++...+++|..+...+..+.|.++-...=
T Consensus 85 GqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeL 126 (306)
T PF04849_consen 85 GQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDEL 126 (306)
T ss_pred hHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777788888888888888888877777777777655544
No 112
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=96.61 E-value=2.5 Score=51.99 Aligned_cols=60 Identities=13% Similarity=0.155 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRISAEQK---------HEMEDLNDRLSASMQSCTEANEIMKSQ 143 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~E---------s~indLearLsaa~sdrk~aeeelkel 143 (688)
++++....++|++.++..-+++..+++.+..+. -...+|+.++++..+....+.+.+...
T Consensus 60 ~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~~ 128 (1109)
T PRK10929 60 RKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQE 128 (1109)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555544444444444433211 013455555555555544444444433
No 113
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.56 E-value=0.00057 Score=77.87 Aligned_cols=39 Identities=18% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 005601 213 KQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQ 251 (688)
Q Consensus 213 ke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er 251 (688)
..+...++.++.+...|+..+.....+|..|+.|+..-+
T Consensus 484 ~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq 522 (713)
T PF05622_consen 484 EELQSQLEDANRRKEKLEEENREANEKILELQSQLEELQ 522 (713)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666666666665433
No 114
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.56 E-value=1.4 Score=47.09 Aligned_cols=121 Identities=17% Similarity=0.195 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh--h-------hhhch----------HHH
Q 005601 111 ISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR--V-------DRENA----------EAD 171 (688)
Q Consensus 111 ~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE--V-------DlEN~----------Eak 171 (688)
.+..+.++-.+++.++......|..++..+..|...+.+|.......+.... . .|+-. +-+
T Consensus 56 ~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~ 135 (294)
T COG1340 56 KAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERE 135 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 4555666667777777777778888888888877777777777765531111 1 11111 555
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHH
Q 005601 172 LKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQV 247 (688)
Q Consensus 172 LqqALqeLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL 247 (688)
|-+-+-+||.+ ++. ...+...-+.++++...|+.|..+..++..++..+-+.+.+.=.+|
T Consensus 136 lvq~I~~L~k~--------le~--------~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m 195 (294)
T COG1340 136 LVQKIKELRKE--------LED--------AKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEM 195 (294)
T ss_pred HHHHHHHHHHH--------HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555 222 2333334445555556666666666666666666666655544433
No 115
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=96.55 E-value=0.72 Score=52.26 Aligned_cols=177 Identities=20% Similarity=0.239 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh-hhhhch-------
Q 005601 97 MLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR-VDRENA------- 168 (688)
Q Consensus 97 ~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE-VDlEN~------- 168 (688)
++...+.++.-.+......++....--+.+......+..-+++++.|+++++.|++|+..-+-..+ +++-|+
T Consensus 303 k~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~r 382 (622)
T COG5185 303 KWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTR 382 (622)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 333344444444444445555555555667777888888999999999999999988754433333 334343
Q ss_pred --------HHHHHHHHHHHHHHHHHHhh------hhhHH----------HHHHhHHH-----------------HHHHHH
Q 005601 169 --------EADLKAAVQKSQLETQEKLK------RLSDA----------ASRRELEQ-----------------QEVINK 207 (688)
Q Consensus 169 --------EakLqqALqeLR~Qa~ee~k------r~~Da----------q~r~nReE-----------------~~~a~k 207 (688)
-.+|-..+-+---+||+-++ ++|+. |++.+-.. ++.|.+
T Consensus 383 eL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~~~~~~i~~~~nd~~l~iN~E~~~~~~sg~~~~I~~ 462 (622)
T COG5185 383 ELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQIGHNVNDSSLKINIEQLFPKGSGINESIKK 462 (622)
T ss_pred HHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHhhcCCCCceeeccccCCccccCchHhHHH
Confidence 23333333322233333222 22222 11111100 333333
Q ss_pred ----------------------HHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 005601 208 ----------------------LQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELE 265 (688)
Q Consensus 208 ----------------------aqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE 265 (688)
++|-.+....-|-.|+..|..++.+++.....+-.+-..-..|+.++ +-+++.+|
T Consensus 463 ~i~eln~~i~~~~~~e~nksi~Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~---~~E~eklE 539 (622)
T COG5185 463 SILELNDEIQERIKTEENKSITLEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQ---RIEIEKLE 539 (622)
T ss_pred HHHHHhHHHHHHHHHHhccceeHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHH
Confidence 44444555556666666777777777777776666666666677777 77777777
Q ss_pred HHHHHHHHHHH
Q 005601 266 NEIKKLREELE 276 (688)
Q Consensus 266 ~Ei~rLR~EMe 276 (688)
+||.+|.=.+-
T Consensus 540 ~el~~lnL~s~ 550 (622)
T COG5185 540 KELNDLNLLSK 550 (622)
T ss_pred HHHHHhhhhcc
Confidence 77776665443
No 116
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.55 E-value=0.31 Score=46.55 Aligned_cols=42 Identities=12% Similarity=0.117 Sum_probs=26.8
Q ss_pred HHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHH
Q 005601 208 LQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCK 249 (688)
Q Consensus 208 aqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~ 249 (688)
+.+-++++-.+.+.+.-+...|+.+...++.|+.+|+.++..
T Consensus 99 ~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 99 TTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKE 140 (143)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 334444455566666667777777777777777777766543
No 117
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.54 E-value=0.34 Score=45.06 Aligned_cols=44 Identities=14% Similarity=0.194 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh
Q 005601 119 MEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR 162 (688)
Q Consensus 119 indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE 162 (688)
+..|...+..+......+...+..++..+.........+....+
T Consensus 5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE 48 (132)
T PF07926_consen 5 LSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYE 48 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444433333333333333333
No 118
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.53 E-value=1.5 Score=47.00 Aligned_cols=58 Identities=22% Similarity=0.296 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh
Q 005601 105 LAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR 162 (688)
Q Consensus 105 L~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE 162 (688)
+...-..+..+...+.++-+......+.+..++++++.++....++..-+..+++...
T Consensus 36 ~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~ 93 (294)
T COG1340 36 ASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYR 93 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344445555555555555555556666666666666666555555555555544
No 119
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.51 E-value=1.1 Score=45.41 Aligned_cols=134 Identities=19% Similarity=0.167 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh--hhhhchHHHHHHHHHHHHHHHHHHh
Q 005601 110 RISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR--VDRENAEADLKAAVQKSQLETQEKL 187 (688)
Q Consensus 110 ~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE--VDlEN~EakLqqALqeLR~Qa~ee~ 187 (688)
..+.+++..-..|....+........+++....|..+|..|++|+..+.+-++ .-++.-=.+|+..+-.+-++
T Consensus 8 ~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~----- 82 (193)
T PF14662_consen 8 SCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEE----- 82 (193)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 35667777777777888888888899999999999999999999998887777 22333345667776666666
Q ss_pred hhhhHHHHHHhHHH----HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHH
Q 005601 188 KRLSDAASRRELEQ----QEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVC 248 (688)
Q Consensus 188 kr~~Daq~r~nReE----~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~ 248 (688)
+|.--+|.++...+ -..+..++++...+..-.+.|..+..+|-..+.+|..++-..|..+.
T Consensus 83 ~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~ 147 (193)
T PF14662_consen 83 NRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLIC 147 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33344555554444 55677899999999999999999999999999988888877776654
No 120
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.46 E-value=0.54 Score=48.91 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=9.5
Q ss_pred hhhhhhhhhhhHHHHHhh
Q 005601 35 DDFRSLQRSNTELRKQLE 52 (688)
Q Consensus 35 DRVR~LE~ENsrLr~QIe 52 (688)
.++..|+.+-.+|..++.
T Consensus 81 ~~l~~l~~~~~~l~a~~~ 98 (423)
T TIGR01843 81 ADAAELESQVLRLEAEVA 98 (423)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 345555555555555543
No 121
>PF13514 AAA_27: AAA domain
Probab=96.45 E-value=3.4 Score=50.18 Aligned_cols=213 Identities=18% Similarity=0.192 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--------------HHHHHHHHhHHHHHH
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCT--------------EANEIMKSQKVTIDE 149 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk--------------~aeeelkelkaei~e 149 (688)
....+...+.|...+.+.+.++..++......+..+.....++..++.... ..-..+.....++..
T Consensus 668 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~gL~~~~~~~~~~~~l~~l~~l~~~~~~~~~ 747 (1111)
T PF13514_consen 668 WEQAAARREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQEALAELGLPADASPEEALEALELLEELREALAEIRE 747 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666667777777777777777777777777777777664443331 111223333344444
Q ss_pred HHhhHHHHHhhhh--------------hhhh-----chHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHH
Q 005601 150 LKTQLDEERNLRR--------------VDRE-----NAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQI 210 (688)
Q Consensus 150 Le~qLee~RkqLE--------------VDlE-----N~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaqE 210 (688)
++.+++.+...+. .+.- ..-..|+..|...|.. +.++++ ...++... ...+..+..
T Consensus 748 ~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~-~~~~~~-l~~~~~~~---~~~~~~~~~ 822 (1111)
T PF13514_consen 748 LRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAREA-QEERER-LQEQLEEL---EEELEQAEE 822 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHH---HHHHHHHHH
Confidence 4444443333333 1100 1122333333333322 111111 11111111 233333334
Q ss_pred HHHHHhHHHHHHHHh-----HHH------HHHHhhhhHHHHHHHHHHHHHHHhh--hhHHHH-----HHHHHHHHHHHHH
Q 005601 211 AEKQSSLQVESLKLK-----LDE------TRERLVTSDNKVRLLETQVCKEQNV--SASWKK-----RVEELENEIKKLR 272 (688)
Q Consensus 211 Elke~R~RVEsL~sK-----L~d------Le~~n~ale~RIReLE~qL~~Er~~--s~~~~k-----~l~~lE~Ei~rLR 272 (688)
.+...+.++..|-.. .++ .-.+...+..++..++.+|...-.. ...... ..+.++.++.++.
T Consensus 823 ~l~~~~~~l~~L~~~a~~~~~e~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~e~~~~d~~~l~~~l~~l~ 902 (1111)
T PF13514_consen 823 ELEELEAELAELLEQAGVEDEEELREAEERAEERRELREELEDLERQLERQADGLDLEELEEELEELDPDELEAELEELE 902 (1111)
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHhhccCHHHHHHHHHHHH
Confidence 444444444333221 111 2223455667777777777332111 111111 3466778888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhHHHHHh
Q 005601 273 EELESEKAAREVAWAKVSGLELDILAATR 301 (688)
Q Consensus 273 ~EMe~QL~EYQdLmDiKvaLDlEIaAYrK 301 (688)
.+++.--.+++.+-.....+..+|.+...
T Consensus 903 ~~l~~l~~~~~~l~~~~~~~~~~l~~l~~ 931 (1111)
T PF13514_consen 903 EELEELEEELEELQEERAELEQELEALEG 931 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 88888888888888888888888887654
No 122
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.45 E-value=0.6 Score=43.49 Aligned_cols=93 Identities=13% Similarity=0.148 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHH
Q 005601 133 CTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAE 212 (688)
Q Consensus 133 rk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaqEEl 212 (688)
+..+..+++.+...+..+..++..+|..++ .+....++.+.. |+..|-.+-...+.+..+++++
T Consensus 5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~--------~q~~~a~~Aq~~--------YE~El~~Ha~~~~~L~~lr~e~ 68 (132)
T PF07926_consen 5 LSSLQSELQRLKEQEEDAEEQLQSLREDLE--------SQAKIAQEAQQK--------YERELVKHAEDIKELQQLREEL 68 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH--------HHHHHHHhHHHHHHHHHHHHHH
Confidence 344444455555444444444444444332 223334444455 7777777777777777777777
Q ss_pred HHHhHHHHHHHHhHHHHHHHhhhhHHHHH
Q 005601 213 KQSSLQVESLKLKLDETRERLVTSDNKVR 241 (688)
Q Consensus 213 ke~R~RVEsL~sKL~dLe~~n~ale~RIR 241 (688)
..++..|..|+..+......+..++...-
T Consensus 69 ~~~~~~~~~l~~~~~~a~~~l~~~e~sw~ 97 (132)
T PF07926_consen 69 QELQQEINELKAEAESAKAELEESEASWE 97 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 77777776666666666666544444433
No 123
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=96.43 E-value=3.5 Score=50.86 Aligned_cols=170 Identities=14% Similarity=0.191 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhh
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSA--SMQSCTEANEIMKSQKVTIDELKTQLDEERNLR 161 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsa--a~sdrk~aeeelkelkaei~eLe~qLee~RkqL 161 (688)
+-.++++.+..+.+.+..++.+..+-+..+.+...+..+...... +..+...++..+.....++.+++.++..+-.++
T Consensus 53 tl~~l~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~ 132 (1109)
T PRK10929 53 ALNWLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQDRA 132 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 667888888888888888888888888888887777754332211 122345556666666666666666666555555
Q ss_pred hh---hh----hchHHHHHHHHHHHHHHHHHH---hhhhhHHHHHHhHHH----HHHHHHHHHHHHHHhHHHHHHHHhHH
Q 005601 162 RV---DR----ENAEADLKAAVQKSQLETQEK---LKRLSDAASRRELEQ----QEVINKLQIAEKQSSLQVESLKLKLD 227 (688)
Q Consensus 162 EV---Dl----EN~EakLqqALqeLR~Qa~ee---~kr~~Daq~r~nReE----~~~a~kaqEElke~R~RVEsL~sKL~ 227 (688)
+. -+ .+ .+..++.|++++.+.+-. -.-...++.-...-| ...+..++-++.....|.+-++.+.+
T Consensus 133 ~~~~~~l~~~pq~-~~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~d 211 (1109)
T PRK10929 133 REISDSLSQLPQQ-QTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDELELAQLSANNRQELARLRSE 211 (1109)
T ss_pred HHHHHHHhhchhh-HHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 31 11 11 255555566655552210 011122222111111 33344555555566666666666666
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 005601 228 ETRERLVTSDNKVRLLETQVCKEQNVS 254 (688)
Q Consensus 228 dLe~~n~ale~RIReLE~qL~~Er~~s 254 (688)
-+..+...++.+++.|..++..-|..-
T Consensus 212 l~~~~~~~l~~~~~~Lq~~in~kR~~~ 238 (1109)
T PRK10929 212 LAKKRSQQLDAYLQALRNQLNSQRQRE 238 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666555444
No 124
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=96.41 E-value=1.7 Score=46.26 Aligned_cols=175 Identities=22% Similarity=0.260 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh-
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR- 162 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE- 162 (688)
-+.+.++...+....+.+.+++. ..+...|.+++..+..-...+..+-++...++..+..|-.|++.=-.+++
T Consensus 87 Nk~lkeE~~~~~~eee~kR~el~------~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~ 160 (309)
T PF09728_consen 87 NKKLKEESKRRAREEEEKRKELS------EKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFEK 160 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443 45667777777777777777777777777777777777777662222222
Q ss_pred ----hhhhc--hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhh
Q 005601 163 ----VDREN--AEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTS 236 (688)
Q Consensus 163 ----VDlEN--~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~al 236 (688)
.+|+- ++++|+++-..+..+ .+.++.+.+- -+.++. +|..+...-..|+.+++.+
T Consensus 161 ~~k~keLE~Ql~~AKl~q~~~~~~~e---------~~k~~~~~~~---------~l~~~~-~~~~~~~~E~~Lr~QL~~Y 221 (309)
T PF09728_consen 161 LLKQKELEVQLAEAKLEQQQEEAEQE---------KEKAKQEKEI---------LLEEAA-QVQTLKETEKELREQLNLY 221 (309)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhH---------HHHHHHHHHH---------HHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 22222 255555544444433 2222222220 111111 7888888888888888888
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 237 DNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAARE 283 (688)
Q Consensus 237 e~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQ 283 (688)
-.+-.+++..|..=-..|...++.++..-..|++|-+|-..-+.-++
T Consensus 222 ~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e 268 (309)
T PF09728_consen 222 SEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWE 268 (309)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888877777777777777777766655544444
No 125
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=96.40 E-value=2.1 Score=48.02 Aligned_cols=13 Identities=15% Similarity=0.023 Sum_probs=6.7
Q ss_pred HhhhHhHHHHHhh
Q 005601 290 SGLELDILAATRD 302 (688)
Q Consensus 290 vaLDlEIaAYrKL 302 (688)
..|.-|+.+.+++
T Consensus 430 ~p~~~el~~l~~~ 442 (582)
T PF09731_consen 430 RPFEDELRALKEL 442 (582)
T ss_pred CCHHHHHHHHHHh
Confidence 4455555555544
No 126
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=96.40 E-value=0.6 Score=46.56 Aligned_cols=80 Identities=26% Similarity=0.355 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 202 QEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAA 281 (688)
Q Consensus 202 ~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~E 281 (688)
...+...+.++...|.++..++.+|...+..+.+.......+..++..-+......+..+..+...+..-|..|-++|..
T Consensus 76 ~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~ 155 (302)
T PF10186_consen 76 RERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLIQELSE 155 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666666666666666666555544444444444443333333333444455555566556555555544
No 127
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.38 E-value=1.9 Score=46.47 Aligned_cols=64 Identities=17% Similarity=0.257 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHH
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTI 147 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei 147 (688)
+.|.....+-+..-|+.|+++|..|-+.-..+-.+...|..+....-.....+.+.+..++-++
T Consensus 57 mtkty~Didavt~lLeEkerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL 120 (306)
T PF04849_consen 57 MTKTYNDIDAVTRLLEEKERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHEL 120 (306)
T ss_pred hhcchhhHHHHHHHHHHHhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566778888888899999999999999888888888888777766665555555555444443
No 128
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=96.37 E-value=1.7 Score=45.79 Aligned_cols=186 Identities=12% Similarity=0.146 Sum_probs=91.0
Q ss_pred hhhhhhhhhHHHHHhhhhhhhhhccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 005601 37 FRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDML----DAKQKELAEISRIS 112 (688)
Q Consensus 37 VR~LE~ENsrLr~QIe~~eeti~tltrEvs~IK~~YEsEL~DARklL~kk~~~EleELk~~L----~kKeKEL~~ae~~~ 112 (688)
.=+|-..|-.|...|..++.++ -.-|+.+-..|+. +.-+=..|-.++..+++.++..| ++..+.+..++..+
T Consensus 15 ~~~L~~~N~~L~~~IqdtE~st---~~~Vr~lLqqy~~-~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql 90 (258)
T PF15397_consen 15 EDFLTKLNKELIKEIQDTEDST---ALKVRKLLQQYDI-YRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQL 90 (258)
T ss_pred HHHHHHhhHHHHHHHHhHHhhH---HHHHHHHHHHHHH-HHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3468889999999999999988 7777777777764 22222222222222233333222 33333444444455
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh-----------hhhhchHHHHHHHHHHHHH
Q 005601 113 AEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR-----------VDRENAEADLKAAVQKSQL 181 (688)
Q Consensus 113 ~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE-----------VDlEN~EakLqqALqeLR~ 181 (688)
..++++|...+..|+...-=+. = +-=-...+|+.|..||+.++..-. ..|.+-..+.+..-++|-.
T Consensus 91 ~~l~akI~k~~~el~~L~TYkD-~--EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~~l~~~~q~k~~~il~ 167 (258)
T PF15397_consen 91 EQLDAKIQKTQEELNFLSTYKD-H--EYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQMELASLSRKIQEKKEEILS 167 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-h--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555444322111 1 111112245555555555554444 3333335555555555555
Q ss_pred HHHHHhhhhhHHHHHHhHHH----HHHHHHHHHHHHHHhHHHHHHHHhHHHH
Q 005601 182 ETQEKLKRLSDAASRRELEQ----QEVINKLQIAEKQSSLQVESLKLKLDET 229 (688)
Q Consensus 182 Qa~ee~kr~~Daq~r~nReE----~~~a~kaqEElke~R~RVEsL~sKL~dL 229 (688)
-+.+..-+.|...+.+.=-+ ...+..-++++.++.-.|..|+..+..|
T Consensus 168 ~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L 219 (258)
T PF15397_consen 168 SAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQL 219 (258)
T ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555544433322 3444444444444444444444433333
No 129
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.30 E-value=1.9 Score=49.73 Aligned_cols=150 Identities=17% Similarity=0.232 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh--hhhhchHHHHHHH
Q 005601 98 LDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR--VDRENAEADLKAA 175 (688)
Q Consensus 98 L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE--VDlEN~EakLqqA 175 (688)
....+++|..++..+.++.+.+..+.+.+.......+.+++++...+.+..+|+.++..-++-.. -|-++.-++|+.-
T Consensus 323 ~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~ 402 (594)
T PF05667_consen 323 QEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQAL 402 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 44556666666666667777777777777777777777777777777777777777765555544 3333334444443
Q ss_pred HHHHHHHHHHHhhhhhHHHH----HHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHH
Q 005601 176 VQKSQLETQEKLKRLSDAAS----RRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVC 248 (688)
Q Consensus 176 LqeLR~Qa~ee~kr~~Daq~----r~nReE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~ 248 (688)
++.-..- -.+|..+++..= ..+|.-......-..+.++.-..|..++.++..+...+-.-+..+..|...+.
T Consensus 403 v~~s~~r-l~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e 478 (594)
T PF05667_consen 403 VEASEQR-LVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELE 478 (594)
T ss_pred HHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322211 223333333221 11222222222222333333444555555555555555555555566555553
No 130
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.29 E-value=1.9 Score=45.61 Aligned_cols=176 Identities=16% Similarity=0.201 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhchHHHH
Q 005601 93 VLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADL 172 (688)
Q Consensus 93 ELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~EakL 172 (688)
-|...+.+.+..+..++......+..+..|.+.+....+...++.+++...+.+|.+|++++++++..+. .+...|
T Consensus 28 ~~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~----~r~~~l 103 (265)
T COG3883 28 LLSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV----ERQELL 103 (265)
T ss_pred hhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 3444467777777777777777777777777777777777777777777777777777777776665554 112222
Q ss_pred HHHHHHHHHH--HH------HHhhhhh------HHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHH
Q 005601 173 KAAVQKSQLE--TQ------EKLKRLS------DAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDN 238 (688)
Q Consensus 173 qqALqeLR~Q--a~------ee~kr~~------Daq~r~nReE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~ 238 (688)
+.-++-|+.= ++ =.=|-|. .+--..---+++.+...++.-+.+...=..|..+++.|..-.+-++.
T Consensus 104 ~~raRAmq~nG~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~ 183 (265)
T COG3883 104 KKRARAMQVNGTATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELET 183 (265)
T ss_pred HHHHHHHHHcCChhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222210 00 0000000 11111111225555556666666666666777777777777777777
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 005601 239 KVRLLETQVCKEQNVSASWKKRVEELENEIKKLR 272 (688)
Q Consensus 239 RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR 272 (688)
....|+.|...-....++.....+....|+.-|.
T Consensus 184 ~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 184 QLNSLNSQKAEKNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 7788877776666666555555555555544444
No 131
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.28 E-value=2.7 Score=47.31 Aligned_cols=134 Identities=25% Similarity=0.291 Sum_probs=73.8
Q ss_pred hhhhhhhhcccccccc------ccccCC---------CCC----Ccch-hhhhhhhhhhhHHHHHhhhhhhhhhccchhh
Q 005601 6 AKRKAEEYVSDNKRLK------GIGICS---------PDG----PLSL-DDFRSLQRSNTELRKQLESQVLEIDKLRNEN 65 (688)
Q Consensus 6 ~krk~e~~~~e~kr~k------glgig~---------~~g----pisl-DRVR~LE~ENsrLr~QIe~~eeti~tltrEv 65 (688)
.|++++-.-+..|||- -.|-.+ |+| -|.+ ++||+||+.-..|-.---...+-.-.++-|+
T Consensus 173 ~~~~a~~snsptkriss~~~~nssg~ssn~~~tedl~~e~mee~r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEn 252 (502)
T KOG0982|consen 173 VKKDAERSNSPTKRISSSSSFNSSGKSSNKLETEDLLVEGMEEERIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQEN 252 (502)
T ss_pred ccchhhccCchhhhhhhhhhcccccccccccchhhhhhhhhhchhhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHH
Confidence 4667777777778776 233211 111 1222 5899999887776653222233333456788
Q ss_pred HHHHHhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005601 66 RVVVERHEKEMKEMKESV----SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMK 141 (688)
Q Consensus 66 s~IK~~YEsEL~DARklL----~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelk 141 (688)
..++.+| +.|.+.+|-. ...+.++-+.-+--|-|++++... .+.-++.++.+.--+...+-..+.
T Consensus 253 lqLvhR~-h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasl----------e~Enlqmr~qqleeentelRs~~a 321 (502)
T KOG0982|consen 253 LQLVHRY-HMLEEQRREQELRAEESLSEEERRHREILIKKEREASL----------EKENLQMRDQQLEEENTELRSLIA 321 (502)
T ss_pred HHHHHHH-HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887 5788877766 555666666666666666655432 123344444444333333334444
Q ss_pred HhHHHHHHH
Q 005601 142 SQKVTIDEL 150 (688)
Q Consensus 142 elkaei~eL 150 (688)
.+++.+++|
T Consensus 322 rlksl~dkl 330 (502)
T KOG0982|consen 322 RLKSLADKL 330 (502)
T ss_pred HHHHHHHHH
Confidence 444444443
No 132
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.27 E-value=1.3 Score=46.21 Aligned_cols=35 Identities=3% Similarity=0.110 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHH
Q 005601 121 DLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLD 155 (688)
Q Consensus 121 dLearLsaa~sdrk~aeeelkelkaei~eLe~qLe 155 (688)
.+++++....+....++..+..++.++..+++++.
T Consensus 148 ~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~ 182 (423)
T TIGR01843 148 LILAQIKQLEAELAGLQAQLQALRQQLEVISEELE 182 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333
No 133
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=3.7 Score=49.25 Aligned_cols=79 Identities=9% Similarity=0.032 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhh
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEME---DLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNL 160 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~in---dLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~Rkq 160 (688)
.+.+.-|+++|..++..+.-++.+.......++.++. ..+..+.+-..--+..++++..+..+..+|..+...+-+.
T Consensus 680 ~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~ 759 (970)
T KOG0946|consen 680 EKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLTKE 759 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777777777777777777776665 3333333444455566778888888888888777777777
Q ss_pred hh
Q 005601 161 RR 162 (688)
Q Consensus 161 LE 162 (688)
|.
T Consensus 760 L~ 761 (970)
T KOG0946|consen 760 LN 761 (970)
T ss_pred HH
Confidence 74
No 134
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=96.26 E-value=2.3 Score=46.19 Aligned_cols=148 Identities=20% Similarity=0.273 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHH----HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHH
Q 005601 169 EADLKAAVQKSQLETQEKLKRLSDAASRRELEQ----QEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLE 244 (688)
Q Consensus 169 EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE----~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE 244 (688)
-..|.+.+.-++.++...|..|+++--...|.- ..+-+++.-.++++.-.|..+..-|..|+..+..-..-+.--+
T Consensus 220 S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaq 299 (384)
T PF03148_consen 220 SAQLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQ 299 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 456677777777777777766666554444333 3333444444444443333333333333333333332222222
Q ss_pred HHHHH---------HHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhhHHHHHHhhHhH
Q 005601 245 TQVCK---------EQN-VSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAAR 314 (688)
Q Consensus 245 ~qL~~---------Er~-~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYrKLLEgEE~RLkgar 314 (688)
..|.. =|+ .+.....++..+..=|..|+..|..-...|+.|..-...|+-+|+-=..-|..-+.|--+-|
T Consensus 300 TRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~K~~sL~iD~~~c~~~R 379 (384)
T PF03148_consen 300 TRLENRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIAVKNNSLFIDRERCMQLR 379 (384)
T ss_pred HHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 22211 011 11233467888889999999999999999999999999999999999998888876665555
Q ss_pred hh
Q 005601 315 ER 316 (688)
Q Consensus 315 er 316 (688)
.+
T Consensus 380 ~~ 381 (384)
T PF03148_consen 380 RR 381 (384)
T ss_pred cc
Confidence 44
No 135
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.26 E-value=2.8 Score=49.87 Aligned_cols=95 Identities=24% Similarity=0.259 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 203 EVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAR 282 (688)
Q Consensus 203 ~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EY 282 (688)
+.-..+..+++-++...+.|..++.+++..+..+..+|.-||..|..||..|.....+-..++.+|.++..+-..+...
T Consensus 645 eS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~- 723 (769)
T PF05911_consen 645 ESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLA- 723 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhcc-
Confidence 3344455556666777888899999999999999999999999999999999776666777777777766554433322
Q ss_pred HHHHHHHHhhhHhHHHHH
Q 005601 283 EVAWAKVSGLELDILAAT 300 (688)
Q Consensus 283 QdLmDiKvaLDlEIaAYr 300 (688)
==++|+.=+-||+|+-
T Consensus 724 --~~~~k~kqe~EiaaAA 739 (769)
T PF05911_consen 724 --NEDKKIKQEKEIAAAA 739 (769)
T ss_pred --ccccccchHHHHHHHH
Confidence 2356777788887654
No 136
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=3.6 Score=49.27 Aligned_cols=175 Identities=16% Similarity=0.199 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 005601 115 QKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAA 194 (688)
Q Consensus 115 ~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq 194 (688)
+.+...-|+-+|.+..-.+..|...+.+.+..|...+..+++.+++++..+-. -..|++-|++++.- |-+
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~ise-i~qlqarikE~q~k----l~~----- 504 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISE-IDQLQARIKELQEK----LQK----- 504 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHH----HHh-----
Confidence 45555556666666666666667777777777777788888888887722211 23455555554433 211
Q ss_pred HHHhHHH-HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 005601 195 SRRELEQ-QEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLRE 273 (688)
Q Consensus 195 ~r~nReE-~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~ 273 (688)
+-..+++ ...+-..+-..+....|+..|......-+.--.++.+++-+ |..|-... -..++.....|.+||.
T Consensus 505 l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqlde----lskE~esk---~~eidi~n~qlkelk~ 577 (1118)
T KOG1029|consen 505 LAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDE----LSKETESK---LNEIDIFNNQLKELKE 577 (1118)
T ss_pred hhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH---HHhhhhHHHHHHHHHH
Confidence 1112222 01111111112222223333333222222222222222222 23344444 6778888899999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhHhHHHHHhhhHHH
Q 005601 274 ELESEKAAREVAWAKVSGLELDILAATRDLDFE 306 (688)
Q Consensus 274 EMe~QL~EYQdLmDiKvaLDlEIaAYrKLLEgE 306 (688)
..-.|+-+.++|+-++--+=.||..-..-|.++
T Consensus 578 ~~~~q~lake~~yk~e~d~~ke~et~~lel~~~ 610 (1118)
T KOG1029|consen 578 DVNSQQLAKEELYKNERDKLKEAETKALELIGE 610 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999987655555554444444443
No 137
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.21 E-value=2.1 Score=45.30 Aligned_cols=54 Identities=24% Similarity=0.222 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 005601 201 QQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVS 254 (688)
Q Consensus 201 E~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s 254 (688)
++..+.+++.++......|+.++.+|.+++.++..++.+|.++..+...-+..-
T Consensus 207 D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI 260 (325)
T PF08317_consen 207 DQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEI 260 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367778888888888888888888888888888888888888777665544433
No 138
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.20 E-value=3.9 Score=48.23 Aligned_cols=70 Identities=16% Similarity=0.067 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh
Q 005601 93 VLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR 162 (688)
Q Consensus 93 ELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE 162 (688)
+.++.+++--.=|..++...+.+...++.++.+++.+.-.+...+..++.+-..+.+++++|..-++++.
T Consensus 134 ~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~ 203 (716)
T KOG4593|consen 134 QCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQ 203 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666667778889999999999999999999999999999999999999999999999988888877
No 139
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.19 E-value=1.9 Score=52.61 Aligned_cols=228 Identities=19% Similarity=0.183 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhh---hhhhhh
Q 005601 90 QLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNL---RRVDRE 166 (688)
Q Consensus 90 EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~Rkq---LEVDlE 166 (688)
+|.+.+.+|...-+++....+.+...+++++-|+.+|..+..+.+.....+.....++...+.+++...=. +.-++.
T Consensus 656 ~L~~~k~rl~eel~ei~~~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~ 735 (1141)
T KOG0018|consen 656 QLKEKKERLLEELKEIQKRRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQ 735 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHH
Confidence 34444444444444444444456666667777777766666655544444444444444444444321111 113445
Q ss_pred chHHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHH
Q 005601 167 NAEADLKAAVQKSQLETQEKLK-----RLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVR 241 (688)
Q Consensus 167 N~EakLqqALqeLR~Qa~ee~k-----r~~Daq~r~nReE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIR 241 (688)
|.+..++.--.+++. ++..|= |.+=. ++.|.+-.. ...--.+..+..-++..|.++|+=..+ .....|+.
T Consensus 736 ~~e~~~~~L~~~~n~-ved~if~~f~~~igv~-ir~Yee~~~-~~~~a~k~~ef~~q~~~l~~~l~fe~~--~d~~~~ve 810 (1141)
T KOG0018|consen 736 NREGEMKELEERMNK-VEDRIFKGFCRRIGVR-IREYEEREL-QQEFAKKRLEFENQKAKLENQLDFEKQ--KDTQRRVE 810 (1141)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhhhhcCee-eehHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhheec--ccHHHHHH
Confidence 554444432222222 122221 11111 233333222 111112233344445555555543322 33344444
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhhHHHHHHhhHhHhhHHHhh
Q 005601 242 LLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARERIMLRE 321 (688)
Q Consensus 242 eLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYrKLLEgEE~RLkgareri~lre 321 (688)
-++.-+........+..+.....+..|..+ .+|+. +. ..+..-...||+-.++.+..==.=+.-+---|..-|
T Consensus 811 ~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~-k~-----k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~e 883 (1141)
T KOG0018|consen 811 RWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEK-KN-----KSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIE 883 (1141)
T ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHH-HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 444444444443333344444445555555 44444 11 223333445555555554332222333333455556
Q ss_pred hhhhHhhc
Q 005601 322 TQLRAFYS 329 (688)
Q Consensus 322 tqlrafys 329 (688)
|++-.|-|
T Consensus 884 s~ie~~~~ 891 (1141)
T KOG0018|consen 884 SKIERKES 891 (1141)
T ss_pred hHHHHHHH
Confidence 66666644
No 140
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.19 E-value=0.0013 Score=75.17 Aligned_cols=54 Identities=15% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhHHHH---HHHHhHHHHHHHhhhhHHHHHHHHHHHH
Q 005601 195 SRRELEQQEVINKLQIAEKQSSLQVE---SLKLKLDETRERLVTSDNKVRLLETQVC 248 (688)
Q Consensus 195 ~r~nReE~~~a~kaqEElke~R~RVE---sL~sKL~dLe~~n~ale~RIReLE~qL~ 248 (688)
++..|.-+..+.-+.|+.+.+..+++ .+..+|.+++-++..|+.+.+.....+.
T Consensus 273 lk~Lr~~~~n~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~ 329 (722)
T PF05557_consen 273 LKHLRQSQENVELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQ 329 (722)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444446666666666666655544 4446666666666666666655555443
No 141
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=4 Score=48.21 Aligned_cols=75 Identities=17% Similarity=0.272 Sum_probs=50.8
Q ss_pred chhhhhhhhhhhhHHHHHhhhhhhhhhccchhhHHHHHhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 33 SLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEM---KEMKESVSISYLHQLKVLRDMLDAKQKELAE 107 (688)
Q Consensus 33 slDRVR~LE~ENsrLr~QIe~~eeti~tltrEvs~IK~~YEsEL---~DARklL~kk~~~EleELk~~L~kKeKEL~~ 107 (688)
.++..+.-+..|..|+.+..+-.+.+..-+++.+.+..-|..+. ++..+.+..++..-.++++..+..+.++..-
T Consensus 284 ~~~~~k~t~~~~~~lr~~~~s~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~k 361 (698)
T KOG0978|consen 284 YERELKDTESDNLKLRKQHSSAADSLESKSRDLESLLDKIQDLISQEAELSKKLRSKLLESAKKLKILLREKDRESQK 361 (698)
T ss_pred HHHHHhcccchHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Confidence 56667777889999999999888888665667777666666544 4444445666666666666666655555444
No 142
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.01 E-value=0.97 Score=43.67 Aligned_cols=128 Identities=20% Similarity=0.194 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhchHHHHHHHHHHHHHHH
Q 005601 104 ELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLET 183 (688)
Q Consensus 104 EL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~EakLqqALqeLR~Qa 183 (688)
.|..++.....++..+.-|++.|-.+-..+-.+.-+.-..+++|..|+.++.++...|. .|..-|.-||.+
T Consensus 11 kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~--------~L~~EL~~l~sE- 81 (140)
T PF10473_consen 11 KLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELN--------QLELELDTLRSE- 81 (140)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH-
Confidence 44455555556666666666666666666666666666666666666666665544432 222333333333
Q ss_pred HHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 005601 184 QEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEE 263 (688)
Q Consensus 184 ~ee~kr~~Daq~r~nReE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~ 263 (688)
+.. +---......++++|+..++.+.+-|..+|.........+ ...+.+
T Consensus 82 ------------------k~~----------L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~~---~~~ve~ 130 (140)
T PF10473_consen 82 ------------------KEN----------LDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKEES---KSAVEM 130 (140)
T ss_pred ------------------HHH----------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 111 1111223345566777777777777777777755555555 555555
Q ss_pred HHHHHHHH
Q 005601 264 LENEIKKL 271 (688)
Q Consensus 264 lE~Ei~rL 271 (688)
|..++..|
T Consensus 131 L~~ql~~L 138 (140)
T PF10473_consen 131 LQKQLKEL 138 (140)
T ss_pred HHHHHhhh
Confidence 55555544
No 143
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=95.93 E-value=6.3 Score=48.37 Aligned_cols=227 Identities=15% Similarity=0.164 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHH--
Q 005601 78 EMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLD-- 155 (688)
Q Consensus 78 DARklL~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLe-- 155 (688)
=.|+.|+|-|..|++.|+..|.....--. .+-. +.+.-..+.++....-.++.++.++..++.+|-.+..++-
T Consensus 400 l~K~~llKd~~~EIerLK~dl~AaReKnG----vyis-ee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~ 474 (1041)
T KOG0243|consen 400 LMKKTLLKDLYEEIERLKRDLAAAREKNG----VYIS-EERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQ 474 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhCc----eEec-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 36777899999998888877654322111 0000 1111122333333333334444444444444444433331
Q ss_pred -HHHhhhhhhhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhh
Q 005601 156 -EERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLV 234 (688)
Q Consensus 156 -e~RkqLEVDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ 234 (688)
..+..|..+++.-+.+|+...++|..- ++| |.......+++...+.+....+..+.-+...|+..+......++
T Consensus 475 ~~~~~~l~~~~~~~k~~L~~~~~el~~~-~ee----~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s 549 (1041)
T KOG0243|consen 475 LEIKELLKEEKEKLKSKLQNKNKELESL-KEE----LQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLS 549 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233344444455566555555554 222 22222234444555555555566666666667777777777777
Q ss_pred hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhhHHHHHHhh---
Q 005601 235 TSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLK--- 311 (688)
Q Consensus 235 ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYrKLLEgEE~RLk--- 311 (688)
.+-.||..+++--+.=+... ..-..++-.-+.-|-.-....+..+...+-...++= +.++.
T Consensus 550 ~l~~kld~~~~~~d~n~~~~---~~~~~~l~~~~~~~~~~v~~~~s~~~~~l~~~~~~~-------------~s~~s~~~ 613 (1041)
T KOG0243|consen 550 SLFEKLDRKDRLDDDNQEVI---DDFQSQLSENLSTLHGLVASSSSQQISQLTTMLAQM-------------ESFLSAKS 613 (1041)
T ss_pred HHHHHhhhhhccccccHHHH---HHHhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHhhh-------------HHHhhhhc
Confidence 77777766655444333333 222233333344444444445555544443332221 11111
Q ss_pred HhHhhHHHhhhhhhHhhcc
Q 005601 312 AARERIMLRETQLRAFYST 330 (688)
Q Consensus 312 gareri~lretqlrafyst 330 (688)
-|=|-.+-+.+..|.||+|
T Consensus 614 ~~~e~~~t~~~~~r~~~~~ 632 (1041)
T KOG0243|consen 614 KATEIMKTKISKDRDILSE 632 (1041)
T ss_pred cchhhhhhhhhhHHHHHHH
Confidence 2333344456678888876
No 144
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=95.93 E-value=2.9 Score=44.51 Aligned_cols=118 Identities=10% Similarity=0.117 Sum_probs=81.8
Q ss_pred hhhhhHHHHHhhhhhhhhhccchhhHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 41 QRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESV--SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHE 118 (688)
Q Consensus 41 E~ENsrLr~QIe~~eeti~tltrEvs~IK~~YEsEL~DARklL--~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~ 118 (688)
...+..|...|.....+- --+..|...|..-|.+.|++= +..+.-..+.|....+..+.++.-+.....-+|+.
T Consensus 4 ~K~~~~l~q~l~~l~~~e----eK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~L 79 (309)
T PF09728_consen 4 KKAARQLMQSLNKLSSPE----EKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESL 79 (309)
T ss_pred hhHHHHHHHHHhcCCChH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555543332222 345678888888888888865 66777778888888899999999888888889999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhHHHHH-HHHhhHHHHHhhhh
Q 005601 119 MEDLNDRLSASMQSCTEANEIMKSQKVTID-ELKTQLDEERNLRR 162 (688)
Q Consensus 119 indLearLsaa~sdrk~aeeelkelkaei~-eLe~qLee~RkqLE 162 (688)
|-+|+..-....-..+.+..+-...+.++. ++..-|.+...+++
T Consensus 80 CRELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~~e 124 (309)
T PF09728_consen 80 CRELQKQNKKLKEESKRRAREEEEKRKELSEKFQATLKDIQAQME 124 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888777777666666665555555543 35555555555555
No 145
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=95.81 E-value=1.2 Score=52.64 Aligned_cols=118 Identities=19% Similarity=0.146 Sum_probs=88.9
Q ss_pred hhhhhhhhhhHHHHHhhhhhhhhhccchhhHHHHHhhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Q 005601 36 DFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESV-----------SISYLHQLKVLRDMLDAKQKE 104 (688)
Q Consensus 36 RVR~LE~ENsrLr~QIe~~eeti~tltrEvs~IK~~YEsEL~DARklL-----------~kk~~~EleELk~~L~kKeKE 104 (688)
||+-++.+-..+++......+...||.+.+.-. +--+++.|-|.+. .....+=++.|...|..|..+
T Consensus 29 r~~e~e~~~~~ar~~~~~a~e~~~~lq~~~~e~--~aqk~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~ 106 (916)
T KOG0249|consen 29 RVPELEHSLPEARKDLIKAEEMNTKLQRDIREA--MAQKEDMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDAD 106 (916)
T ss_pred CcHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhH--HhhhcccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchh
Confidence 677777777788887777777776666554432 2234444444443 344456678899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHH
Q 005601 105 LAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 156 (688)
Q Consensus 105 L~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee 156 (688)
+.+.+.+.+.+.-++.-++.+|.+++. -..|.+.-..+.-.+++|.++.+.
T Consensus 107 lrq~eekn~slqerLelaE~~l~qs~r-ae~lpeveael~qr~~al~~aee~ 157 (916)
T KOG0249|consen 107 LRQNEEKNRSLQERLELAEPKLQQSLR-AETLPEVEAELAQRNAALTKAEEH 157 (916)
T ss_pred hchhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999 888888888887777777766543
No 146
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=95.79 E-value=0.0025 Score=72.85 Aligned_cols=30 Identities=10% Similarity=-0.046 Sum_probs=0.0
Q ss_pred hhhhHHHHHHhHHHHHHHHHHHHHHHHHhH
Q 005601 188 KRLSDAASRRELEQQEVINKLQIAEKQSSL 217 (688)
Q Consensus 188 kr~~Daq~r~nReE~~~a~kaqEElke~R~ 217 (688)
.+.-..++..+|.-......++.|++.+|.
T Consensus 249 ~k~l~~ql~~i~~LE~en~~l~~Elk~Lr~ 278 (722)
T PF05557_consen 249 NKELKEQLAHIRELEKENRRLREELKHLRQ 278 (722)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555554444555555554444
No 147
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=95.77 E-value=3.9 Score=44.70 Aligned_cols=111 Identities=15% Similarity=0.144 Sum_probs=69.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHHHHHhHHH
Q 005601 69 VERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEME--DLNDRLSASMQSCTEANEIMKSQKVT 146 (688)
Q Consensus 69 K~~YEsEL~DARklL~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~in--dLearLsaa~sdrk~aeeelkelkae 146 (688)
..+|-....+++.. .+....+-|-.++......+..+++.+..+..... +....-..+.+.-..++..+...+..
T Consensus 178 ~~~~~~~~~~~~~~---~~~~~~~~l~~~l~~lr~~~~~ae~~~~~~~~~~~l~~~~~~~~~~~~~~~~ln~ql~~~~~~ 254 (458)
T COG3206 178 AQAYLADQLEAQLE---AFRRASDSLDERLEELRARLQEAEAQVEDFRAQHGLTDAARGQLLSEQQLSALNTQLQSARAR 254 (458)
T ss_pred HHHHHHHHhhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHH
Confidence 44555555554443 33444455555666666666666666665554433 33345555677778888888888888
Q ss_pred HHHHHhhHHHHHhhhhhhhhch---HHHHHHHHHHHHHH
Q 005601 147 IDELKTQLDEERNLRRVDRENA---EADLKAAVQKSQLE 182 (688)
Q Consensus 147 i~eLe~qLee~RkqLEVDlEN~---EakLqqALqeLR~Q 182 (688)
.+.....|..++..+...++.. +---..+++.||.+
T Consensus 255 ~~~~~a~l~~~~~~~~~~~~~~~~~~~~~s~~i~~Lr~~ 293 (458)
T COG3206 255 LAQAEARLASLLQLLPLGREAAALREVLESPTIQDLRQQ 293 (458)
T ss_pred HHHHHHHHHHHHHhhcccccchhhhHHhccHHHHHHHHH
Confidence 8888888888888887444322 22222378888888
No 148
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.75 E-value=2.3 Score=49.17 Aligned_cols=31 Identities=6% Similarity=0.006 Sum_probs=14.8
Q ss_pred HHHHHHHHhHHHHHHHHhHHHHHHHhhhhHH
Q 005601 208 LQIAEKQSSLQVESLKLKLDETRERLVTSDN 238 (688)
Q Consensus 208 aqEElke~R~RVEsL~sKL~dLe~~n~ale~ 238 (688)
...+++.+|..+..+...+-.-+.....|..
T Consensus 445 ~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~ 475 (594)
T PF05667_consen 445 KLQEIKELREEIKEIEEEIRQKEELYKQLVK 475 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555544444444444433
No 149
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=95.68 E-value=3.1 Score=46.87 Aligned_cols=107 Identities=15% Similarity=0.184 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 204 VINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAARE 283 (688)
Q Consensus 204 ~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQ 283 (688)
....+.+.+.++...++.+...|..+-..+..-..++.+|+..|..-+... ++.-..+ .++.+.+++++.+|...+
T Consensus 267 ~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~Lk---rKyg~s~-e~l~~~~~~l~~eL~~l~ 342 (563)
T TIGR00634 267 SLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLK---RKYGASV-EEVLEYAEKIKEELDQLD 342 (563)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH---HHhCCCH-HHHHHHHHHHHHHHHHHh
Confidence 445555666666666666666666666666666667777776665544433 2222221 233444455555555555
Q ss_pred HHHHHHHhhhHhHHHHHhhhHHHHHHhhHhH
Q 005601 284 VAWAKVSGLELDILAATRDLDFERRRLKAAR 314 (688)
Q Consensus 284 dLmDiKvaLDlEIaAYrKLLEgEE~RLkgar 314 (688)
..-+-.-.|.-+|..+.+-|.-=-..|..+|
T Consensus 343 ~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R 373 (563)
T TIGR00634 343 DSDESLEALEEEVDKLEEELDKAAVALSLIR 373 (563)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555666666666555443333333333
No 150
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.61 E-value=5.5 Score=45.32 Aligned_cols=132 Identities=21% Similarity=0.302 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH--hH--------HHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 005601 202 QEVINKLQIAEKQSSLQVESLKL--KL--------DETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKL 271 (688)
Q Consensus 202 ~~~a~kaqEElke~R~RVEsL~s--KL--------~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rL 271 (688)
...+..+.+..+.+...++-|+. .| ..+..++..+.++...+...+......| ..+..++..+
T Consensus 312 ~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~y-------S~i~~~l~~~ 384 (560)
T PF06160_consen 312 YEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPY-------SEIQEELEEI 384 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCH-------HHHHHHHHHH
Confidence 55556666666666666555432 22 2333344444444444444444443333 5566667777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhhHHHHHHhhHhHhhH------HHhhhhhhHhhccHHHHHHHHHH
Q 005601 272 REELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARERI------MLRETQLRAFYSTTEEISVLFAR 340 (688)
Q Consensus 272 R~EMe~QL~EYQdLmDiKvaLDlEIaAYrKLLEgEE~RLkgareri------~lretqlrafystteeis~lfak 340 (688)
.+.|..-..+..++++...+|--+=..+|+-|.-=..-|...+-+| .|=+.=+-.||.+.++|..|+..
T Consensus 385 ~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~ 459 (560)
T PF06160_consen 385 EEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDE 459 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777666665433333333322224455554444 23355566899999999988864
No 151
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=95.59 E-value=5.1 Score=47.81 Aligned_cols=101 Identities=28% Similarity=0.287 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHH-------HHHHHHHHHHHHHH
Q 005601 202 QEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKR-------VEELENEIKKLREE 274 (688)
Q Consensus 202 ~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~-------l~~lE~Ei~rLR~E 274 (688)
......+...+..+++++..+..+|..|+.++..+..-...+|.||..++..+....-+ +..+-..+..|..|
T Consensus 609 e~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~E 688 (769)
T PF05911_consen 609 EMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEE 688 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 56677788889999999999999999999999999999999999999887766444443 44445555666677
Q ss_pred HHHHHHHHHHHHHHHHhhhHhHHHHHhh
Q 005601 275 LESEKAAREVAWAKVSGLELDILAATRD 302 (688)
Q Consensus 275 Me~QL~EYQdLmDiKvaLDlEIaAYrKL 302 (688)
|+.+.+--+++..+-..|..+|.-+.+.
T Consensus 689 le~er~~~~e~~~kc~~Le~el~r~~~~ 716 (769)
T PF05911_consen 689 LEKERALSEELEAKCRELEEELERMKKE 716 (769)
T ss_pred HHHHHhcchhhhhHHHHHHHHHHhhhcc
Confidence 7777777778888888888887777554
No 152
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=95.43 E-value=3.5 Score=44.18 Aligned_cols=38 Identities=3% Similarity=0.085 Sum_probs=23.0
Q ss_pred HHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh
Q 005601 125 RLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR 162 (688)
Q Consensus 125 rLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE 162 (688)
+...+.+-..-+++.+..++.++.+.+..|..-|.+--
T Consensus 165 ~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~ 202 (444)
T TIGR03017 165 KVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKG 202 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44444455566666666666666666666666655443
No 153
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=95.39 E-value=4.9 Score=43.94 Aligned_cols=193 Identities=18% Similarity=0.183 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh-hhhhc-------hHHHHHHHHHHHHHHHHHHhhhh-
Q 005601 120 EDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR-VDREN-------AEADLKAAVQKSQLETQEKLKRL- 190 (688)
Q Consensus 120 ndLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE-VDlEN-------~EakLqqALqeLR~Qa~ee~kr~- 190 (688)
..++.+..+.......+...+..+..++...+.+.+.-|.+.. ++..+ .-..+..+|...|.+...--+++
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~l~~lr~~~~~ae~~~~~~~~~~~l~~~~~~~~~~~~~~~~ln~ql~~~~~~~~~~~a~l~ 263 (458)
T COG3206 184 DQLEAQLEAFRRASDSLDERLEELRARLQEAEAQVEDFRAQHGLTDAARGQLLSEQQLSALNTQLQSARARLAQAEARLA 263 (458)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555666666666666666666666666665555544 33211 13444555555554422211111
Q ss_pred -hHHHH--------HHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHH---
Q 005601 191 -SDAAS--------RRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWK--- 258 (688)
Q Consensus 191 -~Daq~--------r~nReE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~--- 258 (688)
...+. ..+.-.+..+..+++..-..+.++..+...+...--+..+++..+.+++.++..|=.+.....
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~s~~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~~ 343 (458)
T COG3206 264 SLLQLLPLGREAAALREVLESPTIQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQILASLPNE 343 (458)
T ss_pred HHHHhhcccccchhhhHHhccHHHHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHhchhH
Confidence 00001 111111556666777777777777777777777667777777777777776665544432211
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhhHHHHHHhhH
Q 005601 259 -KRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKA 312 (688)
Q Consensus 259 -k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYrKLLEgEE~RLkg 312 (688)
..+...+..|.+....+..++..+=.+.--=..|+-|..+++.+++--=.|++-
T Consensus 344 ~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe 398 (458)
T COG3206 344 LALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYETLLQRYQE 398 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112333333333334444444444444444455555555555555544344333
No 154
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=95.36 E-value=8.3 Score=45.73 Aligned_cols=145 Identities=19% Similarity=0.270 Sum_probs=89.8
Q ss_pred hhhhhhhhHHHHHhhhhhhhhhccchhhHHHHH-----------------hhHHHHHHHHHHH------HHHHHHHHHHH
Q 005601 38 RSLQRSNTELRKQLESQVLEIDKLRNENRVVVE-----------------RHEKEMKEMKESV------SISYLHQLKVL 94 (688)
Q Consensus 38 R~LE~ENsrLr~QIe~~eeti~tltrEvs~IK~-----------------~YEsEL~DARklL------~kk~~~EleEL 94 (688)
--|+.+|..|.+.++..-....-|+.+....+. .||.|=.+.|.+. +.++....++|
T Consensus 123 qELQf~NE~lSlKLee~i~en~dL~k~nnaTR~lCNlLKeT~~rsaEK~~~yE~EREET~qly~~l~~niekMi~aFEeL 202 (786)
T PF05483_consen 123 QELQFENEKLSLKLEEEIQENKDLRKENNATRHLCNLLKETCQRSAEKMKKYEYEREETRQLYMDLNENIEKMIAAFEEL 202 (786)
T ss_pred HHHHHhhhHHhHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 357888888888777766555555555554443 4888888888887 66777777777
Q ss_pred HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhh---HHHHHhhhhh
Q 005601 95 RDMLDAKQKE--------LAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQ---LDEERNLRRV 163 (688)
Q Consensus 95 k~~L~kKeKE--------L~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~q---Lee~RkqLEV 163 (688)
+.....-+-+ +...+-.-..|...++..+..++-....+.+-+..++++...+.+-.++ |++..+....
T Consensus 203 R~qAEn~r~EM~fKlKE~~~k~~~leeey~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E 282 (786)
T PF05483_consen 203 RVQAENDRQEMHFKLKEDYEKFEDLEEEYKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHE 282 (786)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6554433333 3334444456777777888888888887888888888877777665543 3444444333
Q ss_pred hhhch---HHHHHHHHHHHHHH
Q 005601 164 DRENA---EADLKAAVQKSQLE 182 (688)
Q Consensus 164 DlEN~---EakLqqALqeLR~Q 182 (688)
-|-.+ ...|.+-|+++..-
T Consensus 283 ~Lkes~~~qe~L~~eL~~~K~s 304 (786)
T PF05483_consen 283 NLKESNEEQEHLLQELEDIKQS 304 (786)
T ss_pred HHHHhHHhHHHHHHHHHHHHHH
Confidence 33222 33344444444443
No 155
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=95.36 E-value=3.7 Score=41.63 Aligned_cols=170 Identities=18% Similarity=0.184 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhh
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRV 163 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEV 163 (688)
+.++|.++..-...+.....+ .+..|..+++.|+..|..-......+..+++.++ .|..++.+.+..=..|+.
T Consensus 20 i~~L~~q~~~~~~~i~~~r~~------l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~-~~~~~k~~qe~eI~~Le~ 92 (206)
T PF14988_consen 20 IEKLWKQYIQQLEEIQRERQE------LVSRYAKQTSELQDQLLQKEKEQAKLQQELQALK-EFRRLKEQQEREIQTLEE 92 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHH
Confidence 455555555544444332222 3345666666666666666666666666776665 566666666666666677
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHH--HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHH
Q 005601 164 DRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQ--QEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVR 241 (688)
Q Consensus 164 DlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE--~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIR 241 (688)
++.+..+.-+..++++..+ ++.+..+..++- ...+..+...-++ +..++.
T Consensus 93 e~~~~~~e~~~~l~~~~~q-------fl~EK~~LEke~~e~~i~~l~e~a~~e---------------------l~~k~~ 144 (206)
T PF14988_consen 93 ELEKMRAEHAEKLQEAESQ-------FLQEKARLEKEASELKILQLGERAHKE---------------------LKKKAQ 144 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHHhHHHhhHH---------------------HHHHHH
Confidence 7777777778888888877 444444444432 1111111111111 122333
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 005601 242 LLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLEL 294 (688)
Q Consensus 242 eLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDl 294 (688)
-||-.-.. .+ ..-...+-+|-.+||++|.+-+++|+.|-+.+..|..
T Consensus 145 ale~~A~~---~l---~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~ 191 (206)
T PF14988_consen 145 ALELAAKK---SL---DEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEK 191 (206)
T ss_pred HHHHHHHH---HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33321110 11 2334456688899999999999999999999998864
No 156
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=95.35 E-value=0.85 Score=42.79 Aligned_cols=82 Identities=16% Similarity=0.209 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhh
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRV 163 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEV 163 (688)
+.++..++..|+..+.+.+..+..+++.+...++....+...+..+....+...+++..++..+...+.|+....+..+.
T Consensus 61 ~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~ 140 (151)
T PF11559_consen 61 LRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKER 140 (151)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777888888888888888888877777777777777777777777766666666666666666666666555555444
Q ss_pred hh
Q 005601 164 DR 165 (688)
Q Consensus 164 Dl 165 (688)
++
T Consensus 141 E~ 142 (151)
T PF11559_consen 141 EI 142 (151)
T ss_pred HH
Confidence 43
No 157
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=95.33 E-value=3.7 Score=41.47 Aligned_cols=32 Identities=13% Similarity=0.113 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRISAEQ 115 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~ 115 (688)
++++...++.|++.++..-+++..+++.+..+
T Consensus 33 ~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l 64 (240)
T PF12795_consen 33 IKKQKKRAAEYQKQIDQAPKEIRELQKELEAL 64 (240)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 44444444444444444444444444444333
No 158
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.27 E-value=1.2 Score=52.27 Aligned_cols=151 Identities=19% Similarity=0.263 Sum_probs=87.8
Q ss_pred HHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhH-----H
Q 005601 183 TQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSAS-----W 257 (688)
Q Consensus 183 a~ee~kr~~Daq~r~nReE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~-----~ 257 (688)
|.++|+++-.....+...|...+..++++.+.++.+-+.|..|+++...+-..+.+|+..|=..+.. +.-..+ +
T Consensus 559 ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~-~~P~LS~AEr~~ 637 (717)
T PF10168_consen 559 AREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNS-QLPVLSEAEREF 637 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCCCHHHHHH
Confidence 4555666666666666667788888888888899999999999999999888888888877555532 222111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhhHHHHHHhhHhHhhHHHhhhhhhHhhccHHHHHHH
Q 005601 258 KKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARERIMLRETQLRAFYSTTEEISVL 337 (688)
Q Consensus 258 ~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYrKLLEgEE~RLkgareri~lretqlrafystteeis~l 337 (688)
.+++..+..+|+.|+.-|++-+ ..+ +...+-++..+.+ -+.-+.|-++|.|.-+++--+-..-
T Consensus 638 ~~EL~~~~~~l~~l~~si~~lk----------~k~----~~Q~~~i~~~~~~---~~~s~~L~~~Q~~~I~~iL~~~~~~ 700 (717)
T PF10168_consen 638 KKELERMKDQLQDLKASIEQLK----------KKL----DYQQRQIESQKSP---KKKSIVLSESQKRTIKEILKQQGEE 700 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHH----HHHHHHHhccccc---cCCCccCCHHHHHHHHHHHHHHHHH
Confidence 2223333333333332222211 111 1111111111111 2344788999999877776665555
Q ss_pred HHHHHHHHHHHHhh
Q 005601 338 FARQQEQLKAMQKT 351 (688)
Q Consensus 338 fakqqeqlkaMQrT 351 (688)
.+.+-.++|.+-..
T Consensus 701 I~~~v~~ik~i~~~ 714 (717)
T PF10168_consen 701 IDELVKQIKNIKKI 714 (717)
T ss_pred HHHHHHHHHHHHHh
Confidence 56566666665544
No 159
>PF15294 Leu_zip: Leucine zipper
Probab=95.15 E-value=0.95 Score=48.08 Aligned_cols=138 Identities=12% Similarity=0.103 Sum_probs=78.8
Q ss_pred hhhhhHHHHHhhhhhhhhhccch----hhHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 41 QRSNTELRKQLESQVLEIDKLRN----ENRV--VVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAE 114 (688)
Q Consensus 41 E~ENsrLr~QIe~~eeti~tltr----Evs~--IK~~YEsEL~DARklL~kk~~~EleELk~~L~kKeKEL~~ae~~~~~ 114 (688)
+.||.+|..+|...+..--+-.. +.+. +..+-|.==..+-...+.++.+||+.|+.+|...++.+..+=.....
T Consensus 85 elEn~eLLe~i~~~E~~~~~~~~~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~k 164 (278)
T PF15294_consen 85 ELENRELLEQIAEFEKQEFTSSFKPNQETSKPKLEPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSK 164 (278)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888877654311121 1111 11111111112222338899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHH---HHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhchHHHHHHHHHHH
Q 005601 115 QKHEMEDLNDRLSASMQSCT---EANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKS 179 (688)
Q Consensus 115 ~Es~indLearLsaa~sdrk---~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~EakLqqALqeL 179 (688)
+++.+++|........ .++ --..++.++...++.|+.+|+.+=..++.....-+..|+.+.|+|
T Consensus 165 l~~~L~~lq~~~~~~~-~k~~~~~~~q~l~dLE~k~a~lK~e~ek~~~d~~~~~k~L~e~L~~~Khel 231 (278)
T PF15294_consen 165 LEAQLKELQDEQGDQK-GKKDLSFKAQDLSDLENKMAALKSELEKALQDKESQQKALEETLQSCKHEL 231 (278)
T ss_pred HHHHHHHHHHHHHhhh-ccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988332222 111 112233344444444444444443333333333366677766664
No 160
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=95.14 E-value=7.4 Score=43.99 Aligned_cols=73 Identities=19% Similarity=0.179 Sum_probs=49.5
Q ss_pred cccccccccccCCCCCCcch----hhhhhhhhhhhHHHHHhhhhhhhhhccchhh-------HHHHHhhHHHHHHHHHHH
Q 005601 15 SDNKRLKGIGICSPDGPLSL----DDFRSLQRSNTELRKQLESQVLEIDKLRNEN-------RVVVERHEKEMKEMKESV 83 (688)
Q Consensus 15 ~e~kr~kglgig~~~gpisl----DRVR~LE~ENsrLr~QIe~~eeti~tltrEv-------s~IK~~YEsEL~DARklL 83 (688)
|...+--|=|-+-|--|+++ .||-+|.++|.-|..+++++.-+-.-|..|. ..|..+||.|=.=.-.+|
T Consensus 26 css~ss~~GG~~~p~sP~~~e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQaraeqeeEfisntL 105 (552)
T KOG2129|consen 26 CSSHSSHSGGGHEPFSPSPGESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQARAEQEEEFISNTL 105 (552)
T ss_pred cccccCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhccchHHHHHHHHH
Confidence 33444444455567778776 4899999999999999998876543334443 457788887766666666
Q ss_pred HHHH
Q 005601 84 SISY 87 (688)
Q Consensus 84 ~kk~ 87 (688)
+|++
T Consensus 106 lkki 109 (552)
T KOG2129|consen 106 LKKI 109 (552)
T ss_pred HHHH
Confidence 5544
No 161
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=95.14 E-value=2.8 Score=45.31 Aligned_cols=222 Identities=17% Similarity=0.251 Sum_probs=116.0
Q ss_pred hhhhhhhhhhhhHHHHHhhhhhhh-----------------hhccchhhHHHHHhhHHH---------HHHHHHHHHHHH
Q 005601 34 LDDFRSLQRSNTELRKQLESQVLE-----------------IDKLRNENRVVVERHEKE---------MKEMKESVSISY 87 (688)
Q Consensus 34 lDRVR~LE~ENsrLr~QIe~~eet-----------------i~tltrEvs~IK~~YEsE---------L~DARklL~kk~ 87 (688)
+.|+..|.+|-.+|..+|+..... +++|.+.+..| +=.+ +.++...+.+++
T Consensus 93 ~~kl~RL~~Ev~EL~eEl~~~~~~~~~~~~e~~~~~~l~~~~~~L~~~L~~l---~l~~~lg~~~~~~~~~~~~~~~~kl 169 (388)
T PF04912_consen 93 EQKLQRLRREVEELKEELEKRKADSKESDEEKISPEELAQQLEELSKQLDSL---KLEELLGEETAQDLSDPQKALSKKL 169 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccCChhhHHHHHHHHHHHHHHh---hcccccchhhhcccccchhhHHHHH
Confidence 478888888888888888775322 22222222222 1001 112233447778
Q ss_pred HHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hHHHHHHHHH
Q 005601 88 LHQLKVLRDMLDA-----------------KQKELAEISRISAEQKHEMEDLNDRLSASMQ---------SCTEANEIMK 141 (688)
Q Consensus 88 ~~EleELk~~L~k-----------------KeKEL~~ae~~~~~~Es~indLearLsaa~s---------drk~aeeelk 141 (688)
..+++.++..... ....-...-.+++++++|++.|+..|...-. ....+-.-+.
T Consensus 170 ~~~l~~~k~~~~~~~~~~~~~~ityel~~~p~~~~~~~la~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~ 249 (388)
T PF04912_consen 170 LSQLESFKSSSGAGSSPANSDHITYELYYPPEQAKSQQLARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALN 249 (388)
T ss_pred HHhhhhcccccccCCCCCCCCceeeeeecCcccchhhHHHHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHH
Confidence 8888888532110 0011123346889999999999998887111 1233334444
Q ss_pred HhHHHHHHHHhhHHHHHhhhhhhhhchHHHHHHHHHHHH------H------HHHHHhhhhhHHHHHHhHHH--------
Q 005601 142 SQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQ------L------ETQEKLKRLSDAASRRELEQ-------- 201 (688)
Q Consensus 142 elkaei~eLe~qLee~RkqLEVDlEN~EakLqqALqeLR------~------Qa~ee~kr~~Daq~r~nReE-------- 201 (688)
.|..++.-|.. .-|+.-+.+|+.-++++- . .-+..|..+|+---+...--
T Consensus 250 ~L~~~lslL~~----------~~Ld~i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~ 319 (388)
T PF04912_consen 250 ELERQLSLLDP----------AKLDSIERRLKSLLSELEELAEKRKEAKEDAEQESKIDELYEILPRWDPYAPSLPSLVE 319 (388)
T ss_pred HHHHHHHhcCH----------HHHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 44444444321 112222333333333221 1 11122333333222221111
Q ss_pred -HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 005601 202 -QEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKL 271 (688)
Q Consensus 202 -~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rL 271 (688)
-.....+.++..+.-.++..|.....++...+..++.-+..+|..+..-.... ...+..+|..|.+|
T Consensus 320 RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~i---~~n~~~le~Ri~~L 387 (388)
T PF04912_consen 320 RLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFKENMETI---EKNVKKLEERIAKL 387 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcc
Confidence 45556666666666677777777777777777777777777777766665555 55566666666554
No 162
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=95.13 E-value=2 Score=45.26 Aligned_cols=54 Identities=13% Similarity=0.171 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 235 TSDNKVRLLETQVCKEQNVSASW-KKRVEELENEIKKLREELESEKAAREVAWAK 288 (688)
Q Consensus 235 ale~RIReLE~qL~~Er~~s~~~-~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDi 288 (688)
.+..++..|+.|+..++.+-... ...+.....+..+|..+++...+-|+.++..
T Consensus 246 ~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r 300 (362)
T TIGR01010 246 SLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTS 300 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444332110 1123444445555555555555555555543
No 163
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=95.11 E-value=7.4 Score=43.76 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 005601 241 RLLETQVCKEQNVSASWKKRVEELENEIKKLRE 273 (688)
Q Consensus 241 ReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~ 273 (688)
+.|...+..||..+ ...|+.+...|..|..
T Consensus 363 ~~i~~~v~~Er~~~---~~~l~~~~~~~~~le~ 392 (582)
T PF09731_consen 363 KEIKEKVEQERNGR---LAKLAELNSRLKALEE 392 (582)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 44455566666666 5555555555555443
No 164
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=9.7 Score=45.15 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=33.2
Q ss_pred ccccc--CCCCCCcchhhhhhhhhhhhHHHHHhhhhhhhhhccchhhHHHHHhhHHHHHHH
Q 005601 21 KGIGI--CSPDGPLSLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEM 79 (688)
Q Consensus 21 kglgi--g~~~gpislDRVR~LE~ENsrLr~QIe~~eeti~tltrEvs~IK~~YEsEL~DA 79 (688)
-|.|+ +||.|||..-.++.|-.+-..|+.-=++....+++|.-....|...|+.=..++
T Consensus 130 ~~~~~~~~~~~~t~~~t~~~~l~~~iee~~~~~~~~~~ele~lq~~~~~~~~~~~~~~~~l 190 (698)
T KOG0978|consen 130 YGNGNGSLSGTITVNSTELEELRDEIEELRELASTRMEELEKLQLYSDEILRQLDRFRVEL 190 (698)
T ss_pred CCCcccccCcccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666 556666666666666666666555544455555555555555555554433333
No 165
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=95.07 E-value=4.6 Score=41.22 Aligned_cols=70 Identities=19% Similarity=0.224 Sum_probs=36.1
Q ss_pred HHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005601 218 QVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSG 291 (688)
Q Consensus 218 RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKva 291 (688)
.+...+.||.|++..+.-+.+.+++=+.....=+... ..+..+-.+|...+.+....|.+=.++++-...
T Consensus 186 ~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l----~~~~~k~~~l~~~~~~~~~~L~~a~~~L~~a~~ 255 (264)
T PF06008_consen 186 DLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNL----EDLEKKKQELSEQQNEVSETLKEAEDLLDQAND 255 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333322222222 244556667777777777777777776654443
No 166
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=95.06 E-value=14 Score=46.56 Aligned_cols=191 Identities=16% Similarity=0.187 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhh--hhhch-HHHHHHHHHHHHHHHHH
Q 005601 109 SRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRV--DRENA-EADLKAAVQKSQLETQE 185 (688)
Q Consensus 109 e~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEV--DlEN~-EakLqqALqeLR~Qa~e 185 (688)
-.....++..+.+|+..+.+..+.++.+...+..++..+.++....+.+.++... .+.+. -+++......++.= .
T Consensus 877 l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l~~~--~ 954 (1294)
T KOG0962|consen 877 LARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLLHQI--Y 954 (1294)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 3344555666666666666666666666666666666666555555555544321 00000 11222211111111 0
Q ss_pred HhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHH---------HhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhH
Q 005601 186 KLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLK---------LKLDETRERLVTSDNKVRLLETQVCKEQNVSAS 256 (688)
Q Consensus 186 e~kr~~Daq~r~nReE~~~a~kaqEElke~R~RVEsL~---------sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~ 256 (688)
+++--++......-. ........+.+...+.++.-.. -++..-.-++..++.++++|++.+....-...+
T Consensus 955 ~~~~~~~~~~~~~~~-~~~l~~~~e~l~~~~~~~~~~~~~l~~~~~~er~l~dnl~~~~l~~q~~e~~re~~~ld~Qi~~ 1033 (1294)
T KOG0962|consen 955 KLNECFEQYGFDDLR-IAQLSESEEHLEERDNEVNEIKQKIRNQYQRERNLKDNLTLRNLERKLKELERELSELDKQILE 1033 (1294)
T ss_pred HhHHHHHHHhhhhhc-hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000001111100000 1122222322333322222222 223333334445555666666555544444322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhhH
Q 005601 257 WKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLD 304 (688)
Q Consensus 257 ~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYrKLLE 304 (688)
...+....+...|..+.+....+.-.++.---.+...|.-|++=|.
T Consensus 1034 --~~~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~ 1079 (1294)
T KOG0962|consen 1034 --ADIKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELR 1079 (1294)
T ss_pred --hHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 2245555666677777777777777777777777777777777665
No 167
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=94.95 E-value=3.9 Score=48.53 Aligned_cols=215 Identities=16% Similarity=0.188 Sum_probs=110.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHhH
Q 005601 72 HEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSC-------TEANEIMKSQK 144 (688)
Q Consensus 72 YEsEL~DARklL~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdr-------k~aeeelkelk 144 (688)
-+..+-.||+-+.+-. .+..+++.+...+.+...+.|-++--++.+|..+...- .++|.++....
T Consensus 33 ~e~~~~~ar~~~~~a~--------e~~~~lq~~~~e~~aqk~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankd 104 (916)
T KOG0249|consen 33 LEHSLPEARKDLIKAE--------EMNTKLQRDIREAMAQKEDMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKD 104 (916)
T ss_pred HHhhhhhhHHHHHHHH--------HHHHHHhhhhhhHHhhhcccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcc
Confidence 3455566665553322 23456667777777778888888888888887776543 34555555555
Q ss_pred HHHHHHHhhHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005601 145 VTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKL 224 (688)
Q Consensus 145 aei~eLe~qLee~RkqLEVDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaqEElke~R~RVEsL~s 224 (688)
+.++.++.-+..+. .-|+-+|-+|++++. .++-.|+.----..+...+....-.....|-++.++..++.|+.
T Consensus 105 a~lrq~eekn~slq----erLelaE~~l~qs~r---ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~na 177 (916)
T KOG0249|consen 105 ADLRQNEEKNRSLQ----ERLELAEPKLQQSLR---AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNA 177 (916)
T ss_pred hhhchhHHhhhhhh----HHHHHhhHhhHhHHh---hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 44444333332222 233333444444433 22222211101111111111122223334556666777777777
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhhH
Q 005601 225 KLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLD 304 (688)
Q Consensus 225 KL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYrKLLE 304 (688)
.|..++.+...-+.-..-|=.++.+--..| .++...--..+.+|-.++++-++-|..+--.|-.|-..|...|-.++
T Consensus 178 eL~rarqreemneeh~~rlsdtvdErlqlh---lkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~ 254 (916)
T KOG0249|consen 178 ELQRARQREKMNEEHNKRLSDTVDERLQLH---LKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELD 254 (916)
T ss_pred HHHHHHHHHHhhhhhccccccccHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 777777776666555555555555222223 33333333345556666666666666666666666666665554443
No 168
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.77 E-value=12 Score=44.42 Aligned_cols=121 Identities=14% Similarity=0.213 Sum_probs=62.4
Q ss_pred cCCCCCCcc-hhhhhhhhhhhhHHHHHhhhhhhhhhccchhhHHHHHhhHH-------------HHHHHHHHH------H
Q 005601 25 ICSPDGPLS-LDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEK-------------EMKEMKESV------S 84 (688)
Q Consensus 25 ig~~~gpis-lDRVR~LE~ENsrLr~QIe~~eeti~tltrEvs~IK~~YEs-------------EL~DARklL------~ 84 (688)
+.+..-|.+ +.|+++|-.++-+=... + +-+.+.+|..||+ +..|+-+-+ .
T Consensus 352 ~~t~~s~~~~~~r~~q~lke~~k~~~~-------i---te~~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~~~~~~~~~ 421 (716)
T KOG4593|consen 352 NSTVTSPARGLERARQLLKEELKQVAG-------I---TEEETKLKELHETLARRLQKRALLLTQERDLNRAILGSKDDE 421 (716)
T ss_pred cccccCcccchHHHHHHHHHHHHHHHH-------h---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchH
Confidence 445556666 67788777666443333 3 5555666666666 222322222 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHH
Q 005601 85 ISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLD 155 (688)
Q Consensus 85 kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLe 155 (688)
+++..++..+....+....=.....+-....++...++...+.--++...+++-.++++..++.+.+.-|.
T Consensus 422 krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~ 492 (716)
T KOG4593|consen 422 KRLAEELPQVTKEREQLKGLVQKVDKHSLEMEASMEELYREITGQKKRLEKLEHELKDLQSQLSSREQSLL 492 (716)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333222233333344445556666666666666666666666666665555554443
No 169
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=94.77 E-value=2.2 Score=41.03 Aligned_cols=73 Identities=23% Similarity=0.304 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHH
Q 005601 86 SYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEER 158 (688)
Q Consensus 86 k~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~R 158 (688)
+...+..+++..+....+++...+.....+.+.+..+...+......++...+.+..+...+..+.+.+.+.+
T Consensus 78 ~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 78 RLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444666666666666666666666666666666666666666666666666666666666666666655555
No 170
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.75 E-value=11 Score=43.99 Aligned_cols=212 Identities=19% Similarity=0.212 Sum_probs=120.2
Q ss_pred CCCcchhhhhhhhhhhhHHHHHhhhhhhhhhccchhhHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 005601 29 DGPLSLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESV---SISYLHQLKVLRDMLDAKQKEL 105 (688)
Q Consensus 29 ~gpislDRVR~LE~ENsrLr~QIe~~eeti~tltrEvs~IK~~YEsEL~DARklL---~kk~~~EleELk~~L~kKeKEL 105 (688)
.||...--|-.|.++-.||+.++...-..+ .--+-|-=+|-+-+..| +.-+.++++-++..+++..-.+
T Consensus 2 a~~~aeq~ve~lr~eierLT~el~q~t~e~--------~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal 73 (772)
T KOG0999|consen 2 AGPMAEQEVEKLRQEIERLTEELEQTTEEK--------IQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEAL 73 (772)
T ss_pred CchhhhhhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488888899999999999999876433221 12234555555555444 2222333333333333333333
Q ss_pred HHHHHH--------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhchHHHHHHHHH
Q 005601 106 AEISRI--------SAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQ 177 (688)
Q Consensus 106 ~~ae~~--------~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~EakLqqALq 177 (688)
...... ...-++.+++.-++=...++.+-+++.++|-++.++.+.+...+.+-+- -++|+..=.
T Consensus 74 ~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~--------~sd~~e~~~ 145 (772)
T KOG0999|consen 74 GQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKV--------HSDLKESNA 145 (772)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhhhcch
Confidence 322211 1123455666666666666666666666666665554444333322111 111111111
Q ss_pred HHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHH-HHHHHHHhhhhH
Q 005601 178 KSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLE-TQVCKEQNVSAS 256 (688)
Q Consensus 178 eLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE-~qL~~Er~~s~~ 256 (688)
. .+.+ -.+++-++|+++-|-.-|=+.-++|+..|-.|.+.+.-|= +|+..|-.+|
T Consensus 146 ~------------~E~q----------R~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkh-- 201 (772)
T KOG0999|consen 146 A------------VEDQ----------RRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKH-- 201 (772)
T ss_pred h------------hHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHH--
Confidence 1 1111 1245567788888888888888999999999988887763 5667776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 257 WKKRVEELENEIKKLREELESEKAAREVAWAKVS 290 (688)
Q Consensus 257 ~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKv 290 (688)
||+||-++.+-.....+++.-.|.
T Consensus 202 ----------eikRleEe~elln~q~ee~~~Lk~ 225 (772)
T KOG0999|consen 202 ----------EIKRLEEETELLNSQLEEAIRLKE 225 (772)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777766666666555543
No 171
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.63 E-value=0.41 Score=46.96 Aligned_cols=88 Identities=19% Similarity=0.257 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhchHHHHH
Q 005601 94 LRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLK 173 (688)
Q Consensus 94 Lk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~EakLq 173 (688)
|..+|-.+...+...+..+.....++..|...+......++.+++++++..+-+.-|...|..+.-++ +-|.
T Consensus 93 l~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~--------~~~e 164 (194)
T PF08614_consen 93 LAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQL--------NMLE 164 (194)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHH
T ss_pred ccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHH
Confidence 34444444444445555555555555555555555555666666666666666666666665555433 3344
Q ss_pred HHHHHHHHHHHHHhhh
Q 005601 174 AAVQKSQLETQEKLKR 189 (688)
Q Consensus 174 qALqeLR~Qa~ee~kr 189 (688)
..+.+|..+-++=++|
T Consensus 165 ~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 165 EKLRKLEEENRELVER 180 (194)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555554433333
No 172
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=94.63 E-value=10 Score=42.97 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 86 SYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLN 123 (688)
Q Consensus 86 k~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLe 123 (688)
++|.++..++..|.+..+.....++++.-++.++++|+
T Consensus 165 ~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe 202 (563)
T TIGR00634 165 ELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELE 202 (563)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 33555555555555555555555555555555555544
No 173
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.63 E-value=7.7 Score=41.62 Aligned_cols=68 Identities=13% Similarity=0.187 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 005601 202 QEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLR 272 (688)
Q Consensus 202 ~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR 272 (688)
...+...+-.+.+.+.++..|+.+|++...+...+...|+++|..+..=|-.+ +.++..|.+.+..|.
T Consensus 217 ~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t---~~Ei~~Lk~~~~~Le 284 (312)
T smart00787 217 LQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFT---FKEIEKLKEQLKLLQ 284 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHH
Confidence 44444445555556666666666666666666666677777777777777777 666666655555543
No 174
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=94.56 E-value=5.6 Score=39.77 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=9.9
Q ss_pred HHHHHHHHhHHHHHHHHhHHHHHHH
Q 005601 208 LQIAEKQSSLQVESLKLKLDETRER 232 (688)
Q Consensus 208 aqEElke~R~RVEsL~sKL~dLe~~ 232 (688)
++.++...+.++..|..++..-+..
T Consensus 124 ~~~~~~~~~~~l~~l~~~l~~~r~~ 148 (302)
T PF10186_consen 124 LQNELEERKQRLSQLQSQLARRRRQ 148 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444433333
No 175
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=94.46 E-value=8.6 Score=43.82 Aligned_cols=183 Identities=14% Similarity=0.051 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH
Q 005601 75 EMKEMKESVSISYLH-----QLKVLRDMLDAKQKEL----AEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKV 145 (688)
Q Consensus 75 EL~DARklL~kk~~~-----EleELk~~L~kKeKEL----~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelka 145 (688)
+|.++|++|.+|.-. -+-.|+.+|...+.-+ ..+-.-..+...+++-++..+...+--+.-|.--+..-++
T Consensus 187 rlqe~~~ll~~Rve~le~~Sal~~lq~~L~la~~~~~~~~e~~i~~~~~f~~r~~~~E~e~rn~~E~~~lA~r~l~~~kK 266 (554)
T KOG4677|consen 187 RLQEVRRLLKGRVESLERFSALRSLQDKLQLAEEAVSMHDENVITAVLIFLKRTLSKEIEFRNELEVRQLALRHLIHFKK 266 (554)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899988444321 1122222222222221 1122233445566777777777777777777777777778
Q ss_pred HHHHHHhhHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhH-------H
Q 005601 146 TIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSL-------Q 218 (688)
Q Consensus 146 ei~eLe~qLee~RkqLEVDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaqEElke~R~-------R 218 (688)
+|++++-+++--| +..+..+|..+++.- +.-..- ..-.++++-|+-++|. -
T Consensus 267 e~de~k~~~~l~~------~l~~keeL~~s~~~e--------------~~i~qs--~~kstas~~E~ee~rve~~~s~ed 324 (554)
T KOG4677|consen 267 EIDEQKLLLDLFR------FLDRKEELALSHYRE--------------HLIIQS--PDKSTASRKEFEETRVELPFSAED 324 (554)
T ss_pred HHHHHHHHHHHHH------HhhhHHHHHHHHHHH--------------hhccCC--CCcchhHHHHHHHHHhcccccHHH
Confidence 8887777766555 222233333332211 000000 1112223333333322 2
Q ss_pred HHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 219 VESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVS----ASWKKRVEELENEIKKLREELESEK 279 (688)
Q Consensus 219 VEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s----~~~~k~l~~lE~Ei~rLR~EMe~QL 279 (688)
++.+..++--||+++-.+++.+|.|+.+++.+..++ +.+......+..++..++.|-+-..
T Consensus 325 ~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~q~~~~h~~ka~~~~~~~~l~~~~ec~~~e~e~~~ 389 (554)
T KOG4677|consen 325 SAHIQDQYTLLRSQIIDIEAQDRHLESAGQTQIFRKHPRKASILNMPLVLTLFYECFYHETEAEG 389 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHhhhHhhhhhhchHHHHHHHHHHHHHHHHhh
Confidence 333444444444444445566777777776655444 3344445556666666666554443
No 176
>PRK11281 hypothetical protein; Provisional
Probab=94.37 E-value=18 Score=44.91 Aligned_cols=39 Identities=15% Similarity=0.019 Sum_probs=22.8
Q ss_pred HHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHH
Q 005601 210 IAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVC 248 (688)
Q Consensus 210 EElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~ 248 (688)
+-.+++.-++..+..+++.+.+++....+.+..+...+.
T Consensus 285 ~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~ 323 (1113)
T PRK11281 285 EINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSER 323 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666666666666665555555555544
No 177
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=94.36 E-value=2.3 Score=49.79 Aligned_cols=126 Identities=19% Similarity=0.274 Sum_probs=78.7
Q ss_pred cCCCCCCcchhhhhhhhhhh-------hHHHHHhhhhhhhhhccchhhHHHHHhhHHHHHHHHHHH-----------HHH
Q 005601 25 ICSPDGPLSLDDFRSLQRSN-------TELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESV-----------SIS 86 (688)
Q Consensus 25 ig~~~gpislDRVR~LE~EN-------srLr~QIe~~eeti~tltrEvs~IK~~YEsEL~DARklL-----------~kk 86 (688)
.+.|+||.=-+|++.||.-. +-|+.||+++-+.| |+....-+.|-..|.-+-++| .+|
T Consensus 101 ~s~~~~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKI----rDLE~cie~kr~kLnatEEmLQqellsrtsLETqK 176 (861)
T KOG1899|consen 101 VSCPEYPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKI----RDLETCIEEKRNKLNATEEMLQQELLSRTSLETQK 176 (861)
T ss_pred ccCCcchHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhH----HHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHH
Confidence 35789999999999998755 55666777777777 777776666666666655555 222
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHhHHHHHHHHhhH
Q 005601 87 --YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLND-RLSASMQSCTEANEIMKSQKVTIDELKTQL 154 (688)
Q Consensus 87 --~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLea-rLsaa~sdrk~aeeelkelkaei~eLe~qL 154 (688)
+.+|+-+||-+|...+|+-..-+++.+.-|..+.+++. +.....+.+-.-+-.+++.+.+++-|+.|+
T Consensus 177 lDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erlqye~klkstk~e~a~L~Eq~ 247 (861)
T KOG1899|consen 177 LDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQYETKLKSTKGEMAPLREQR 247 (861)
T ss_pred hHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHH
Confidence 34566667777777777666666666666666666541 123334444444444555555554444444
No 178
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=94.34 E-value=3.3 Score=49.38 Aligned_cols=51 Identities=18% Similarity=0.239 Sum_probs=40.5
Q ss_pred HHHHHHhHHH-HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHH
Q 005601 192 DAASRRELEQ-QEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRL 242 (688)
Q Consensus 192 Daq~r~nReE-~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIRe 242 (688)
|..+..+|++ ...+.+.+-|+.++-..+.++..||+..+..|..|..-+|.
T Consensus 482 d~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQ 533 (861)
T PF15254_consen 482 DQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQ 533 (861)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHH
Confidence 4455555555 56677788889999999999999999999999888776665
No 179
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=94.33 E-value=8.3 Score=40.81 Aligned_cols=160 Identities=22% Similarity=0.242 Sum_probs=91.6
Q ss_pred cchhhHHHHHhhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H--HH-HHHHHHHH
Q 005601 61 LRNENRVVVERHEKEMKEMKESV----------SISYLHQLKVLRDMLDAKQKELAEISRISAE--Q--KH-EMEDLNDR 125 (688)
Q Consensus 61 ltrEvs~IK~~YEsEL~DARklL----------~kk~~~EleELk~~L~kKeKEL~~ae~~~~~--~--Es-~indLear 125 (688)
+++=++.|...|.+.|.+|+.-| +.++..|++.|.+++.+.+++|..+..= .+ | .+ +|..|.-.
T Consensus 50 ~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TY-kD~EYPvK~vqIa~L~rq 128 (258)
T PF15397_consen 50 YRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTY-KDHEYPVKAVQIANLVRQ 128 (258)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhHHHHHHHHHHHH
Confidence 36777888888888888888888 8888999999999999999999876542 11 1 11 33333333
Q ss_pred HHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhch-HHHHHHHHHHHHHHHHHHhhhhhHHHHHHh----HH
Q 005601 126 LSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENA-EADLKAAVQKSQLETQEKLKRLSDAASRRE----LE 200 (688)
Q Consensus 126 Lsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~-EakLqqALqeLR~Qa~ee~kr~~Daq~r~n----Re 200 (688)
|.+ .-.++..++++|..-....+..++-...++ +.=|.++.-.....-+.-++... .+.... ..
T Consensus 129 lq~----------lk~~qqdEldel~e~~~~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~-~~N~~m~kei~~ 197 (258)
T PF15397_consen 129 LQQ----------LKDSQQDELDELNEMRQMELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQRT-LENQVMQKEIVQ 197 (258)
T ss_pred HHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH-HHHHHHHHHHHH
Confidence 333 233444555555555555555444222222 11122222222222222222222 111111 12
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHH
Q 005601 201 QQEVINKLQIAEKQSSLQVESLKLKLDETRER 232 (688)
Q Consensus 201 E~~~a~kaqEElke~R~RVEsL~sKL~dLe~~ 232 (688)
-.+.|..+.+++-.++.-|+.|+.+..+-+.-
T Consensus 198 ~re~i~el~e~I~~L~~eV~~L~~~~~~~Re~ 229 (258)
T PF15397_consen 198 FREEIDELEEEIPQLRAEVEQLQAQAQDPREV 229 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHH
Confidence 26678888888888888888888887765543
No 180
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=94.32 E-value=12 Score=42.65 Aligned_cols=79 Identities=19% Similarity=0.224 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 202 QEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAA 281 (688)
Q Consensus 202 ~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~E 281 (688)
...+..+++.+.++...|..| .|...+..+..+..+|-.|=..|..|=.......+.+..+..-|..+++....-..+
T Consensus 251 ~~~i~~i~~~l~~~~~~L~~l--~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e 328 (560)
T PF06160_consen 251 EEEIEQIEEQLEEALALLKNL--ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEE 328 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777666 788888888888888888888887776666444444444444444444444433333
Q ss_pred H
Q 005601 282 R 282 (688)
Q Consensus 282 Y 282 (688)
+
T Consensus 329 ~ 329 (560)
T PF06160_consen 329 L 329 (560)
T ss_pred H
Confidence 3
No 181
>PRK10698 phage shock protein PspA; Provisional
Probab=94.29 E-value=7 Score=39.78 Aligned_cols=40 Identities=5% Similarity=0.096 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHH
Q 005601 112 SAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 151 (688)
Q Consensus 112 ~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe 151 (688)
+++.+..+.++..-+..+++.++.++-.+..+...+.++.
T Consensus 33 i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e 72 (222)
T PRK10698 33 IQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQ 72 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555555555555544444444443
No 182
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=94.22 E-value=12 Score=42.17 Aligned_cols=17 Identities=35% Similarity=0.507 Sum_probs=14.5
Q ss_pred hhhhhhhhHHHHHhhhh
Q 005601 38 RSLQRSNTELRKQLESQ 54 (688)
Q Consensus 38 R~LE~ENsrLr~QIe~~ 54 (688)
..++.+...|+.++++.
T Consensus 119 ~e~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 119 QELDQELRRLRRQLEEL 135 (511)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34889999999999987
No 183
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=94.16 E-value=6.1 Score=38.55 Aligned_cols=83 Identities=14% Similarity=0.252 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHH
Q 005601 106 AEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQE 185 (688)
Q Consensus 106 ~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~EakLqqALqeLR~Qa~e 185 (688)
.+|+....-+-..+++--..+...+..+.+++.....+++.+++|+..+...++.--..+...-.+|+.-+..|+++..+
T Consensus 19 ~QAe~i~~~l~~~l~~~~~~~~~~~vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ 98 (177)
T PF07798_consen 19 EQAEAIMKALREVLNDSLEKVAQDLVTKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELRE 98 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666777778888888888888888888888887776665555555566666667666666444
Q ss_pred Hhh
Q 005601 186 KLK 188 (688)
Q Consensus 186 e~k 188 (688)
+|.
T Consensus 99 ei~ 101 (177)
T PF07798_consen 99 EIN 101 (177)
T ss_pred HHH
Confidence 443
No 184
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=94.14 E-value=6.5 Score=38.84 Aligned_cols=177 Identities=17% Similarity=0.201 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhchHHHHH-HHHHHHHHHHH
Q 005601 106 AEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLK-AAVQKSQLETQ 184 (688)
Q Consensus 106 ~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~EakLq-qALqeLR~Qa~ 184 (688)
..++-.+++.+..+..+...+....+..+.++-.+..+...+.++..+...+=+. -..+|+ .+|.+...
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~-------g~edLAr~al~~k~~--- 95 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAA-------GREDLAREALQRKAD--- 95 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHH---
Confidence 4555677788888888888888888888888888888887777777666444221 122222 23322221
Q ss_pred HHhhhhhHHHHHHhHHH----HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHH
Q 005601 185 EKLKRLSDAASRRELEQ----QEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKR 260 (688)
Q Consensus 185 ee~kr~~Daq~r~nReE----~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~ 260 (688)
|+.++..+..+ ...+.+++..+.++..+|..+..|...|..+......+..-=+ .+..-. ..+....
T Consensus 96 ------~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~-~~~~~~--~~~a~~~ 166 (221)
T PF04012_consen 96 ------LEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNE-ALASFS--VSSAMDS 166 (221)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCC--ccchHHH
Confidence 23333333322 4455556666666666666666666666555554444332100 111000 1122333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhhHH
Q 005601 261 VEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDF 305 (688)
Q Consensus 261 l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYrKLLEg 305 (688)
+..++..| .+|+.+-..+.++-+-...||.++.+....-..
T Consensus 167 ~er~e~ki----~~~ea~a~a~~el~~~~~~~e~~l~~~~~~~~~ 207 (221)
T PF04012_consen 167 FERMEEKI----EEMEARAEASAELADSDQDLEAELEELERDSSV 207 (221)
T ss_pred HHHHHHHH----HHHHHHHHHHHHhccCcccHHHHHHHhcCCCcc
Confidence 33333333 334555566667765555688888887665555
No 185
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=94.12 E-value=14 Score=42.73 Aligned_cols=118 Identities=19% Similarity=0.234 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 202 QEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAA 281 (688)
Q Consensus 202 ~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~E 281 (688)
....-+...+++++...++.+..+++.-....+.+...+.+++.+|..-...+ ......|+.||++ ++++
T Consensus 346 ~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q-------~~~~e~L~~Lrkd---El~A 415 (570)
T COG4477 346 LGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQ-------EKVQEHLTSLRKD---ELEA 415 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhH-------HHHHHHHHHHHHH---HHHH
Confidence 55566777788888888888888888888888888888888888886655555 3344556666664 7788
Q ss_pred HHHHHHHHHhhhHhHHHHHhhhHHHHHHhhHhHhhHHHhhhhhhHhhccHHHHHHHHHHH
Q 005601 282 REVAWAKVSGLELDILAATRDLDFERRRLKAARERIMLRETQLRAFYSTTEEISVLFARQ 341 (688)
Q Consensus 282 YQdLmDiKvaLDlEIaAYrKLLEgEE~RLkgareri~lretqlrafystteeis~lfakq 341 (688)
++.|--.|..|- ||.-| + |.++|=|-= +|=|-.|+-+-..|..||.+=
T Consensus 416 re~l~~~~~~l~-eikR~--m---ek~nLPGlP------e~~l~l~~~~~~~i~~l~~eL 463 (570)
T COG4477 416 RENLERLKSKLH-EIKRY--M---EKSNLPGLP------ETFLSLFFTAGHEIQDLMKEL 463 (570)
T ss_pred HHHHHHHHHHHH-HHHHH--H---HHcCCCCCc------HHHHHHHHhhhhHHHHHHHHH
Confidence 888888888774 34333 2 467788854 455678999999999998753
No 186
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=94.08 E-value=8.1 Score=39.69 Aligned_cols=154 Identities=15% Similarity=0.205 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHH---Hhh
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEE---RNL 160 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~---Rkq 160 (688)
+-.++.++.+++..+..++..+..+...+..-...+.-.+.+|....+...-+.+.+..+..++..|+..+... ..+
T Consensus 33 iv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~ 112 (202)
T PF06818_consen 33 IVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACAGRLKRQ 112 (202)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhh
Confidence 45567788888888888888877776655544444555555555555555666667777777777777777775 111
Q ss_pred hh---------hhhhc---hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHH
Q 005601 161 RR---------VDREN---AEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDE 228 (688)
Q Consensus 161 LE---------VDlEN---~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaqEElke~R~RVEsL~sKL~d 228 (688)
.- .-+.+ .-..|...+..||.+.+.|-. ..+.+......|...-..=+|-+ |+|+ -.
T Consensus 113 ~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~-~~e~q~~~Fe~ER~~W~eEKekV---------i~YQ-kQ 181 (202)
T PF06818_consen 113 CQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQ-RREEQRSSFEQERRTWQEEKEKV---------IRYQ-KQ 181 (202)
T ss_pred hccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHH---------HHHH-HH
Confidence 11 11111 123355555555555333222 14444444433322222222222 1222 24
Q ss_pred HHHHhhhhHHHHHHHHHHHH
Q 005601 229 TRERLVTSDNKVRLLETQVC 248 (688)
Q Consensus 229 Le~~n~ale~RIReLE~qL~ 248 (688)
|+...+.+=.|.+.||..|.
T Consensus 182 LQ~nYvqMy~rn~~LE~~l~ 201 (202)
T PF06818_consen 182 LQQNYVQMYQRNQALERELR 201 (202)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 67788888899999998874
No 187
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=94.06 E-value=10 Score=43.55 Aligned_cols=167 Identities=16% Similarity=0.176 Sum_probs=91.9
Q ss_pred HHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHhHHH----HHHHHHH
Q 005601 136 ANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKR---LSDAASRRELEQ----QEVINKL 208 (688)
Q Consensus 136 aeeelkelkaei~eLe~qLee~RkqLEVDlEN~EakLqqALqeLR~Qa~ee~kr---~~Daq~r~nReE----~~~a~ka 208 (688)
.+..+..+-.+|+.|+.+++.+-.+... .-+|-++++.||.- -.+|++ -|.+.+..++.- -+.+.++
T Consensus 262 f~~~~~~i~~~i~~lk~~n~~l~e~i~e-----a~k~s~~i~~l~ek-~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl 335 (622)
T COG5185 262 FEKFVHIINTDIANLKTQNDNLYEKIQE-----AMKISQKIKTLREK-WRALKSDSNKYENYVNAMKQKSQEWPGKLEKL 335 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 4445555555666666555544433332 33566777777665 222222 133333333332 3444555
Q ss_pred HHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 209 QIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAK 288 (688)
Q Consensus 209 qEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDi 288 (688)
+++.-..-..|..|+++++.|..++ ...+-.. ......-+|-.+|-.+|....-+-..|+-.
T Consensus 336 ~~eie~kEeei~~L~~~~d~L~~q~--------------~kq~Is~----e~fe~mn~Ere~L~reL~~i~~~~~~L~k~ 397 (622)
T COG5185 336 KSEIELKEEEIKALQSNIDELHKQL--------------RKQGIST----EQFELMNQEREKLTRELDKINIQSDKLTKS 397 (622)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHH--------------HhcCCCH----HHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 5555555555555555555444443 3322221 222222233334445555555566677777
Q ss_pred HHhhhHhHHHHHhhhHHHHHHhhHhHhhHHHhhhhhhH
Q 005601 289 VSGLELDILAATRDLDFERRRLKAARERIMLRETQLRA 326 (688)
Q Consensus 289 KvaLDlEIaAYrKLLEgEE~RLkgareri~lretqlra 326 (688)
+-.=++||.+--+-|+-==+-+++-+-+|-++-.|++.
T Consensus 398 V~~~~leaq~~~~slek~~~~~~sl~~~i~~~~~~i~~ 435 (622)
T COG5185 398 VKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQIGH 435 (622)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHhh
Confidence 77778888888777777778899999999988888774
No 188
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=94.04 E-value=4.7 Score=46.98 Aligned_cols=34 Identities=15% Similarity=0.231 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005601 260 RVEELENEIKKLREELESEKAAREVAWAKVSGLE 293 (688)
Q Consensus 260 ~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLD 293 (688)
.+-..+.++.+|..+.+..-.-|..|+...-.+.
T Consensus 364 ~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~ 397 (726)
T PRK09841 364 AMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELS 397 (726)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777787777777777877777666443
No 189
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=94.03 E-value=6.9 Score=38.69 Aligned_cols=97 Identities=16% Similarity=0.184 Sum_probs=53.7
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHhHHHHHH
Q 005601 78 EMKESV---SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSC-----TEANEIMKSQKVTIDE 149 (688)
Q Consensus 78 DARklL---~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdr-----k~aeeelkelkaei~e 149 (688)
|-.++| +..+..++..++..+......-..+++.+..++..+.+++.+.-.|+..- +.+-...+.+..++..
T Consensus 23 DP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~ 102 (221)
T PF04012_consen 23 DPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAER 102 (221)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 444444 55556666666666666666666666777777777777777666665431 2333344444444445
Q ss_pred HHhhHHHHHhhhhhhhhchHHHHHHHHHHHHHH
Q 005601 150 LKTQLDEERNLRRVDRENAEADLKAAVQKSQLE 182 (688)
Q Consensus 150 Le~qLee~RkqLEVDlEN~EakLqqALqeLR~Q 182 (688)
|+.+++....+ ..+|+..|.+|...
T Consensus 103 l~~~~~~~~~~--------~~~l~~~l~~l~~k 127 (221)
T PF04012_consen 103 LEQQLDQAEAQ--------VEKLKEQLEELEAK 127 (221)
T ss_pred HHHHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 55555444443 33444444444444
No 190
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=94.00 E-value=0.87 Score=48.33 Aligned_cols=44 Identities=23% Similarity=0.067 Sum_probs=28.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhh
Q 005601 192 DAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVT 235 (688)
Q Consensus 192 Daq~r~nReE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~a 235 (688)
....+.+..-+......+++...+..+++-+..+|..|++.|+.
T Consensus 95 ~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv~ 138 (314)
T PF04111_consen 95 EEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTNVY 138 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 33344444445556666777778888888888888888887764
No 191
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=93.97 E-value=9.9 Score=43.25 Aligned_cols=70 Identities=14% Similarity=0.258 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhch
Q 005601 99 DAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENA 168 (688)
Q Consensus 99 ~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~ 168 (688)
+.++.+|..-+.++..-+..+......|..-......-+..+..++++++++..++...+......||+.
T Consensus 72 ~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~ 141 (514)
T TIGR03319 72 KERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERI 141 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335555555555555555555555555555555555556666666666666666666666666666665
No 192
>PRK12704 phosphodiesterase; Provisional
Probab=93.92 E-value=11 Score=43.07 Aligned_cols=67 Identities=9% Similarity=0.186 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhch
Q 005601 102 QKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENA 168 (688)
Q Consensus 102 eKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~ 168 (688)
+.+|..-+.++..-+..++.....|..-.......+..+..+++++++++..++..+..+...|++.
T Consensus 81 e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~ 147 (520)
T PRK12704 81 RNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERI 147 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555444444444444555554454555555555666666666666666666555556655
No 193
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.89 E-value=15 Score=45.14 Aligned_cols=120 Identities=14% Similarity=0.199 Sum_probs=62.8
Q ss_pred ccCCCCCCcchhhhhhhhhhhhHHHHHhhhhhhhhhccchhhHH-------HHHh--hHHHHHHH---HHHH-HHHHHHH
Q 005601 24 GICSPDGPLSLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRV-------VVER--HEKEMKEM---KESV-SISYLHQ 90 (688)
Q Consensus 24 gig~~~gpislDRVR~LE~ENsrLr~QIe~~eeti~tltrEvs~-------IK~~--YEsEL~DA---RklL-~kk~~~E 90 (688)
-||+|+=|.-++..+.|+..-..|..-+.+...++..|..++-. ++.. +-+.+.=+ ++.+ -+++..+
T Consensus 170 Aig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~e 249 (1072)
T KOG0979|consen 170 AIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDRE 249 (1072)
T ss_pred hcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHH
Confidence 47777777788888888877777777777766666555444433 3221 11222222 2222 5555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 005601 91 LKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQ 143 (688)
Q Consensus 91 leELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkel 143 (688)
+..++...+...+++....+....++....+|+.+..-..+.++.+-.++...
T Consensus 250 y~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~ 302 (1072)
T KOG0979|consen 250 YNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEA 302 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHH
Confidence 55555555555555555555444444444444443333333333333333333
No 194
>PRK00106 hypothetical protein; Provisional
Probab=93.70 E-value=12 Score=43.20 Aligned_cols=65 Identities=17% Similarity=0.303 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhch
Q 005601 104 ELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENA 168 (688)
Q Consensus 104 EL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~ 168 (688)
+|..-+.++..-+..+......|..-.......+..+..++.++.+++.+++....+....|++.
T Consensus 98 rL~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~ 162 (535)
T PRK00106 98 ELKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERV 162 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555444455555555555555555555556666666666666666666666666666665
No 195
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=93.68 E-value=5.4 Score=37.50 Aligned_cols=82 Identities=15% Similarity=0.244 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhh
Q 005601 87 YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRE 166 (688)
Q Consensus 87 ~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlE 166 (688)
+...+..|...+...+..+..+...+..++..+..++++..++....+.+...++.++.++.+|+..+...+.+..+++-
T Consensus 57 l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~r 136 (151)
T PF11559_consen 57 LSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELR 136 (151)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555555555555555555555555555555555555555555555555555555554444443
Q ss_pred ch
Q 005601 167 NA 168 (688)
Q Consensus 167 N~ 168 (688)
..
T Consensus 137 kk 138 (151)
T PF11559_consen 137 KK 138 (151)
T ss_pred HH
Confidence 33
No 196
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=93.63 E-value=24 Score=43.64 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=12.6
Q ss_pred ccccccccCCCCCCCCCCCC
Q 005601 538 AGSWACSTAPSVHGENESPR 557 (688)
Q Consensus 538 agswa~~t~psvhgenesp~ 557 (688)
+||---.|.|.++|....|+
T Consensus 994 ~~~v~~~~~~~~e~~~~~~~ 1013 (1041)
T KOG0243|consen 994 IGSVESLTTPFSEGTLRESR 1013 (1041)
T ss_pred cccccccccCcccccccccc
Confidence 45555566777777766655
No 197
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.60 E-value=22 Score=43.11 Aligned_cols=12 Identities=17% Similarity=0.329 Sum_probs=6.6
Q ss_pred HHHHhhHhHhhH
Q 005601 306 ERRRLKAARERI 317 (688)
Q Consensus 306 EE~RLkgareri 317 (688)
-..++.+.+...
T Consensus 526 ~~~~~~~~~~~~ 537 (1042)
T TIGR00618 526 LTRRMQRGEQTY 537 (1042)
T ss_pred HHHHHHHHHHHH
Confidence 345666665553
No 198
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=93.51 E-value=24 Score=43.19 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 256 SWKKRVEELENEIKKLREELESEKAAREVAW 286 (688)
Q Consensus 256 ~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLm 286 (688)
.....+..+...+..++.++......|...|
T Consensus 728 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L 758 (1047)
T PRK10246 728 SLHSQLQTLQQQDVLEAQRLQKAQAQFDTAL 758 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555554443
No 199
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.34 E-value=8.4 Score=45.56 Aligned_cols=73 Identities=15% Similarity=0.155 Sum_probs=35.5
Q ss_pred hhhhhhccchhhHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 54 QVLEIDKLRNENRVVVERHEKEMKEMKESVSIS---YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASM 130 (688)
Q Consensus 54 ~eeti~tltrEvs~IK~~YEsEL~DARklL~kk---~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~ 130 (688)
..+....|.+=+..+++.|=..+.-||..|-+| +..+.+.... +|..++.....+....+.|.+||..+.
T Consensus 534 ~~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~-------~L~~l~e~~~~l~~~ae~LaeR~e~a~ 606 (717)
T PF10168_consen 534 PQECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLK-------ELQELQEERKSLRESAEKLAERYEEAK 606 (717)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666655566677776443 3333333333 333333334444444444444444444
Q ss_pred HhH
Q 005601 131 QSC 133 (688)
Q Consensus 131 sdr 133 (688)
.--
T Consensus 607 d~Q 609 (717)
T PF10168_consen 607 DKQ 609 (717)
T ss_pred HHH
Confidence 433
No 200
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=93.16 E-value=14 Score=39.63 Aligned_cols=60 Identities=15% Similarity=0.143 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHh
Q 005601 97 MLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERN 159 (688)
Q Consensus 97 ~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~Rk 159 (688)
.+....-+|..-+.-.+++|. +|+..|-++....++|+..++.++.+...++.-+++-|-
T Consensus 28 ~f~~~reEl~EFQegSrE~Ea---elesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~ 87 (333)
T KOG1853|consen 28 HFLQMREELNEFQEGSREIEA---ELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRV 87 (333)
T ss_pred HHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555554 345566666666666666677666666666555555443
No 201
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.13 E-value=18 Score=44.57 Aligned_cols=52 Identities=15% Similarity=0.246 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh
Q 005601 111 ISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR 162 (688)
Q Consensus 111 ~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE 162 (688)
...+..+.+..+...++.+..-+.+.-+.++...+++.++..+|+.++++-+
T Consensus 284 ~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~ 335 (1072)
T KOG0979|consen 284 EKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAE 335 (1072)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666666666667777777777777777777777777654
No 202
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=93.03 E-value=19 Score=40.66 Aligned_cols=60 Identities=17% Similarity=0.269 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHH
Q 005601 85 ISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 151 (688)
Q Consensus 85 kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe 151 (688)
+-...++..++..|.|.+.+|....+...++.+++.-|-+ .+..|+.+..++-++-..|.
T Consensus 119 ~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~-------qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 119 EAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAE-------QRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 4456677777778888777777776666665555555544 45555555555554443333
No 203
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=93.00 E-value=9.7 Score=39.23 Aligned_cols=49 Identities=14% Similarity=0.266 Sum_probs=24.9
Q ss_pred HHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh------hhhhchHHHHHHHH
Q 005601 128 ASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR------VDRENAEADLKAAV 176 (688)
Q Consensus 128 aa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE------VDlEN~EakLqqAL 176 (688)
+..+....++..+..+++++...+++++..+...+ .+++++...+.++-
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~g~iS~~~~d~~~~~~~~a~ 148 (327)
T TIGR02971 94 KLFKDVAAQQATLNRLEAELETAQREVDRYRSLFRDGAVSASDLDSKALKLRTAE 148 (327)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHH
Confidence 33334444444555555555555555555555544 56666655554443
No 204
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=93.00 E-value=2.9 Score=39.89 Aligned_cols=78 Identities=17% Similarity=0.133 Sum_probs=48.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHhHHHHHhhhH
Q 005601 227 DETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREEL-ESEKAAREVAWAKVSGLELDILAATRDLD 304 (688)
Q Consensus 227 ~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EM-e~QL~EYQdLmDiKvaLDlEIaAYrKLLE 304 (688)
+.|...+..+...+..|......-..........+..++....+|+.|. ..-..+..|||-+-.-||-=|..|++.|.
T Consensus 30 ~~l~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk 108 (136)
T PF04871_consen 30 SSLEQENKRLEAEEKELKEAEQAAEAELEELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLK 108 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4444444444444444444332222222333555566666666666554 34457899999999999999999998764
No 205
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=92.93 E-value=3.2 Score=47.49 Aligned_cols=66 Identities=17% Similarity=0.220 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhh
Q 005601 95 RDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNL 160 (688)
Q Consensus 95 k~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~Rkq 160 (688)
..++++...++..+..++..+...+..|..||..+.+.++.+.++++.....|..|++.|...|..
T Consensus 419 ~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~N 484 (518)
T PF10212_consen 419 MSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRN 484 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456777778888889899999999999999999999999999999999999998888888888766
No 206
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.78 E-value=12 Score=37.70 Aligned_cols=44 Identities=25% Similarity=0.354 Sum_probs=26.9
Q ss_pred HHhhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 69 VERHEKEMKEMKESV----------SISYLHQLKVLRDMLDAKQKELAEISRIS 112 (688)
Q Consensus 69 K~~YEsEL~DARklL----------~kk~~~EleELk~~L~kKeKEL~~ae~~~ 112 (688)
...||.-..+++.-- ++.+.+|..+++++.....+.+..+....
T Consensus 4 ~~~He~af~~iK~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN 57 (201)
T PF13851_consen 4 MKNHEKAFQEIKNYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQEN 57 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555432 77777777777777777766666544443
No 207
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=92.75 E-value=7.4 Score=37.47 Aligned_cols=33 Identities=24% Similarity=0.410 Sum_probs=13.6
Q ss_pred HHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHH
Q 005601 213 KQSSLQVESLKLKLDETRERLVTSDNKVRLLET 245 (688)
Q Consensus 213 ke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~ 245 (688)
++.+.+++.++..+..++.....+...+.+++.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (191)
T PF04156_consen 154 QDSREEVQELRSQLERLQENLQQLEEKIQELQE 186 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444333
No 208
>PRK10869 recombination and repair protein; Provisional
Probab=92.72 E-value=22 Score=40.63 Aligned_cols=107 Identities=15% Similarity=0.194 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 205 INKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREV 284 (688)
Q Consensus 205 a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQd 284 (688)
...+.+.+..+...++.+...|...-..+..-..++.++|..|..=+.-. +|.=.. -.+|-..++++..+|+.+..
T Consensus 263 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~L~---rKyg~~-~~~~~~~~~~l~~eL~~L~~ 338 (553)
T PRK10869 263 LSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQISLA---RKHHVS-PEELPQHHQQLLEEQQQLDD 338 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH---HHhCCC-HHHHHHHHHHHHHHHHHhhC
Confidence 34445555555555555555555555555555556666665554443333 333222 23566667777777777777
Q ss_pred HHHHHHhhhHhHHHHHhhhHHHHHHhhHhHh
Q 005601 285 AWAKVSGLELDILAATRDLDFERRRLKAARE 315 (688)
Q Consensus 285 LmDiKvaLDlEIaAYrKLLEgEE~RLkgare 315 (688)
.=+....|.-++....+-|..-=..|..+|.
T Consensus 339 ~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~ 369 (553)
T PRK10869 339 QEDDLETLALAVEKHHQQALETAQKLHQSRQ 369 (553)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777776665555444445554443
No 209
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.72 E-value=1.1 Score=44.16 Aligned_cols=87 Identities=13% Similarity=0.205 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 202 QEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAA 281 (688)
Q Consensus 202 ~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~E 281 (688)
...+..+..++..++..+......|..|+..+..|..+|++|+..|..-.........++..+.-++.-+.+.+..-..|
T Consensus 94 ~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~E 173 (194)
T PF08614_consen 94 AQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEE 173 (194)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666666666666666666666666666666666666665555555555666666666666666666666
Q ss_pred HHHHHHH
Q 005601 282 REVAWAK 288 (688)
Q Consensus 282 YQdLmDi 288 (688)
+.+|.+-
T Consensus 174 n~~Lv~R 180 (194)
T PF08614_consen 174 NRELVER 180 (194)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666543
No 210
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=92.64 E-value=13 Score=39.86 Aligned_cols=100 Identities=20% Similarity=0.149 Sum_probs=56.9
Q ss_pred HHHhHHHHHHHhhhhHHHHHHHHHHH-------HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 005601 222 LKLKLDETRERLVTSDNKVRLLETQV-------CKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLEL 294 (688)
Q Consensus 222 L~sKL~dLe~~n~ale~RIReLE~qL-------~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDl 294 (688)
|.++|.+++.+|..++.++..|=.-+ ..-+..+ -+....|+.++.+++...+++-.-..+|=-----|+.
T Consensus 50 lesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~---y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLEr 126 (333)
T KOG1853|consen 50 LESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQF---YQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLER 126 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 34455555555555555555442222 2222333 6777788888888876655443222222222223444
Q ss_pred hHHHHHhhhHHHHHHhhHhHhhHHHhhhhh
Q 005601 295 DILAATRDLDFERRRLKAARERIMLRETQL 324 (688)
Q Consensus 295 EIaAYrKLLEgEE~RLkgareri~lretql 324 (688)
==.|..-+|+-=|+||+.|-||+-.=|.-|
T Consensus 127 akRati~sleDfeqrLnqAIErnAfLESEL 156 (333)
T KOG1853|consen 127 AKRATIYSLEDFEQRLNQAIERNAFLESEL 156 (333)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666677777799999999997666544
No 211
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=92.45 E-value=11 Score=41.63 Aligned_cols=138 Identities=14% Similarity=0.160 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhh
Q 005601 84 SISYLHQLKVLR---DMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNL 160 (688)
Q Consensus 84 ~kk~~~EleELk---~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~Rkq 160 (688)
+.|+.+..+-|+ ..+++.+.|-.+++.....+.+++-....=+..+..+..++|.-+..++-+...|+-||+....+
T Consensus 77 irk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e 156 (401)
T PF06785_consen 77 IRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQE 156 (401)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 455555544444 35566666666666666666666666666666677777777777777776666666666665544
Q ss_pred hh-hhhhchH--HHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHH
Q 005601 161 RR-VDRENAE--ADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDET 229 (688)
Q Consensus 161 LE-VDlEN~E--akLqqALqeLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaqEElke~R~RVEsL~sKL~dL 229 (688)
.. .+.|++. -.|+++|.-.+.= .+++-----++.+.+.+-|.-+-.++++|.+|+..+-.|
T Consensus 157 ~~Ekeeesq~LnrELaE~layqq~L--------~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnL 220 (401)
T PF06785_consen 157 CGEKEEESQTLNRELAEALAYQQEL--------NDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNL 220 (401)
T ss_pred HhHhHHHHHHHHHHHHHHHHHHHHH--------HHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 2222221 1233333211111 111111122235555555655556666666666665444
No 212
>PRK04406 hypothetical protein; Provisional
Probab=92.44 E-value=0.68 Score=40.35 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh
Q 005601 111 ISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR 162 (688)
Q Consensus 111 ~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE 162 (688)
....++.+|.+|+.+++-.-.-...|++.+..+.++|+.|+.+|..++.+|.
T Consensus 5 ~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 5 TIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456889999999999999999999999999999999999999999988775
No 213
>PRK12704 phosphodiesterase; Provisional
Probab=92.39 E-value=21 Score=40.83 Aligned_cols=95 Identities=13% Similarity=0.142 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhchHHHHHHHHHHHH
Q 005601 101 KQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQ 180 (688)
Q Consensus 101 KeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~EakLqqALqeLR 180 (688)
.++++...+..+...|.++...+..|..-.....+.+..+.....++.++++.|+..++.++.-.+....+|...-.--+
T Consensus 73 le~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~ 152 (520)
T PRK12704 73 FEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTA 152 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 33455555566666666666666666665555666666666666666666666666666555444444444443333334
Q ss_pred HHHHHHhhhhhHHHH
Q 005601 181 LETQEKLKRLSDAAS 195 (688)
Q Consensus 181 ~Qa~ee~kr~~Daq~ 195 (688)
+||.+.|-.+.+.++
T Consensus 153 ~ea~~~l~~~~~~~~ 167 (520)
T PRK12704 153 EEAKEILLEKVEEEA 167 (520)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444333333
No 214
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=92.38 E-value=7.6 Score=39.83 Aligned_cols=18 Identities=17% Similarity=0.119 Sum_probs=9.3
Q ss_pred hhhhchHHHHHHHHHHHH
Q 005601 163 VDRENAEADLKAAVQKSQ 180 (688)
Q Consensus 163 VDlEN~EakLqqALqeLR 180 (688)
.++++++..+.++..++.
T Consensus 146 ~~~~~a~~~~~~a~~~l~ 163 (334)
T TIGR00998 146 EELDHARKALLSAKAALN 163 (334)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555544443
No 215
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=92.36 E-value=0.63 Score=39.47 Aligned_cols=49 Identities=27% Similarity=0.344 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh
Q 005601 114 EQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR 162 (688)
Q Consensus 114 ~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE 162 (688)
+++.+|.+|+.+|+-.-..+..|++.+-.+..+|++|+.+|..++.+|.
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999999999999988887
No 216
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=92.29 E-value=14 Score=37.39 Aligned_cols=149 Identities=13% Similarity=0.177 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHH
Q 005601 90 QLKVLRDMLDAKQKELAEISRISAEQKHEMEDL-----------NDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEER 158 (688)
Q Consensus 90 EleELk~~L~kKeKEL~~ae~~~~~~Es~indL-----------earLsaa~sdrk~aeeelkelkaei~eLe~qLee~R 158 (688)
=|+.|+.++-..+-|-..|+.++..+-...-.- +..-..+....+.+...+......-.-|++||+-+|
T Consensus 5 ALK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQLeyMR 84 (178)
T PF14073_consen 5 ALKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQLEYMR 84 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666665555555555554433222111 111111122355666667777777777889999999
Q ss_pred hhhh-hhhhch-HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhh
Q 005601 159 NLRR-VDRENA-EADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTS 236 (688)
Q Consensus 159 kqLE-VDlEN~-EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~al 236 (688)
+-+. .+.|.. ...-+..|+..|.+-+ .++...--.++.|...-..|-..-+.+
T Consensus 85 kmv~~ae~er~~~le~q~~l~~e~~~~~-------------------------~~~~~klekLe~LE~E~~rLt~~Q~~a 139 (178)
T PF14073_consen 85 KMVESAEKERNAVLEQQVSLQRERQQDQ-------------------------SELQAKLEKLEKLEKEYLRLTATQSLA 139 (178)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhccch-------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877 344433 1222334444433211 111222234566666666777777889
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 005601 237 DNKVRLLETQVCKEQNVSASWKKRVEELENE 267 (688)
Q Consensus 237 e~RIReLE~qL~~Er~~s~~~~k~l~~lE~E 267 (688)
+.+|+.||..|..|.-. ++.+..+-.+
T Consensus 140 e~Ki~~LE~KL~eEehq----RKlvQdkAaq 166 (178)
T PF14073_consen 140 ETKIKELEEKLQEEEHQ----RKLVQDKAAQ 166 (178)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 99999999999887644 3555554433
No 217
>PLN03188 kinesin-12 family protein; Provisional
Probab=92.17 E-value=42 Score=42.55 Aligned_cols=190 Identities=14% Similarity=0.156 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHH
Q 005601 78 EMKESVSISYLHQLKVLRDMLDAKQKELA-EISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 156 (688)
Q Consensus 78 DARklL~kk~~~EleELk~~L~kKeKEL~-~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee 156 (688)
|+-+.|+.++.-||+.=|.=-+.+.-.|. ..++-++.+| +..+|++++++.++..+...+-|.+.|+--++.-.-=..
T Consensus 1075 es~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e-~ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~ 1153 (1320)
T PLN03188 1075 DASRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLE-QYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAE 1153 (1320)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 33566677777777665554444444443 2356666666 478999999999999999999999888755544322222
Q ss_pred HHhhhhhhhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhh--
Q 005601 157 ERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLV-- 234 (688)
Q Consensus 157 ~RkqLEVDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~-- 234 (688)
.|+ .+-|++-|--||.| -+-..+..|+| -.+|..||-|+-..+-
T Consensus 1154 ~~f---------~~alaae~s~l~~e--------reker~~~~~e-----------------nk~l~~qlrdtaeav~aa 1199 (1320)
T PLN03188 1154 SKF---------INALAAEISALKVE--------REKERRYLRDE-----------------NKSLQAQLRDTAEAVQAA 1199 (1320)
T ss_pred HHH---------HHHHHHHHHHHHHH--------HHHHHHHHHHh-----------------hHHHHHHHhhHHHHHHHH
Confidence 333 56677777788877 22222222222 2345566665544433
Q ss_pred -hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhhHHHHHHhhHh
Q 005601 235 -TSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAA 313 (688)
Q Consensus 235 -ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYrKLLEgEE~RLkga 313 (688)
-|-.|+|+-|..+...+.++ ...++|-.++.++|+.-+.-| ++||.+...+| - |.||-+-
T Consensus 1200 gellvrl~eaeea~~~a~~r~-------~~~eqe~~~~~k~~~klkrkh----------~~e~~t~~q~~-a-es~l~~~ 1260 (1320)
T PLN03188 1200 GELLVRLKEAEEALTVAQKRA-------MDAEQEAAEAYKQIDKLKRKH----------ENEISTLNQLV-A-ESRLPKE 1260 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH-h-hccCChh
Confidence 35678888777776665555 556777777777777665555 56777776666 2 3677442
Q ss_pred HhhHHHhhhhhhHhhcc
Q 005601 314 RERIMLRETQLRAFYST 330 (688)
Q Consensus 314 reri~lretqlrafyst 330 (688)
-|++||+.
T Consensus 1261 ---------~~~~~~~~ 1268 (1320)
T PLN03188 1261 ---------AIRPACND 1268 (1320)
T ss_pred ---------hcCccccc
Confidence 15666665
No 218
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.16 E-value=5.2 Score=45.37 Aligned_cols=74 Identities=14% Similarity=0.135 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh
Q 005601 89 HQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR 162 (688)
Q Consensus 89 ~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE 162 (688)
+|++.++..|+.+.+++...+....++++.-.-++.++.+...-.++...+++.++-.-..|.+.+..-+++++
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~ 420 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLK 420 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 45555555555555555554444444444444444444444444444444444444333334444444444444
No 219
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=92.12 E-value=26 Score=40.06 Aligned_cols=119 Identities=20% Similarity=0.262 Sum_probs=54.5
Q ss_pred HHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHH--HHHHHH
Q 005601 130 MQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQ--QEVINK 207 (688)
Q Consensus 130 ~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE--~~~a~k 207 (688)
...+..++.++..+..++..+..++..++..++..++.++.+++ .|+.. +++|+.+|+.-...-=++ ......
T Consensus 59 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~-~l~~~----~~~L~~~F~~LA~~ile~k~~~f~~~ 133 (475)
T PRK10361 59 RAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIR-QMINS----EQRLSEQFENLANRIFEHSNRRVDEQ 133 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555544444433322 23322 233444455444333333 111111
Q ss_pred HHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 005601 208 LQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLRE 273 (688)
Q Consensus 208 aqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~ 273 (688)
. -++|..=|.=++.++.....+|.+++..-..+| ..|..+|+.|.+
T Consensus 134 ~----------~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~----------~~L~~qi~~L~~ 179 (475)
T PRK10361 134 N----------RQSLNSLLSPLREQLDGFRRQVQDSFGKEAQER----------HTLAHEIRNLQQ 179 (475)
T ss_pred H----------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
Confidence 1 222333355555566666666666555433333 345555665553
No 220
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=92.10 E-value=6.5 Score=41.15 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=22.4
Q ss_pred HHHHHHHHhHHHHHHHHhhHHHHHhhhh------hhhhchHHHHHHHH
Q 005601 135 EANEIMKSQKVTIDELKTQLDEERNLRR------VDRENAEADLKAAV 176 (688)
Q Consensus 135 ~aeeelkelkaei~eLe~qLee~RkqLE------VDlEN~EakLqqAL 176 (688)
.++..+...++++...++.++..++.++ .+++++++.++.+-
T Consensus 118 ~~~~~i~~a~~~l~~a~~~~~R~~~L~~~g~vS~~~~~~a~~~~~~a~ 165 (346)
T PRK10476 118 SANEQVERARANAKLATRTLERLEPLLAKGYVSAQQVDQARTAQRDAE 165 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555554 56666655555443
No 221
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=92.02 E-value=21 Score=38.84 Aligned_cols=241 Identities=15% Similarity=0.194 Sum_probs=130.8
Q ss_pred hhhhhhhhhhHHHHHhhhhhhhhhccchhhHHHHHhhHHH---HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 005601 36 DFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKE---MKEMKESVSISYLHQLK----VLRDMLDAKQKELAEI 108 (688)
Q Consensus 36 RVR~LE~ENsrLr~QIe~~eeti~tltrEvs~IK~~YEsE---L~DARklL~kk~~~Ele----ELk~~L~kKeKEL~~a 108 (688)
|+..|+.+|..|+..--...-++ --|-.-|.+..=+. |+-=+..|+.+|..+=+ .|..+|.+...+...+
T Consensus 49 ~~~~L~~e~~~lr~~sv~~~~~a---EqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~l 125 (310)
T PF09755_consen 49 RCKHLQEENRALREASVRIQAKA---EQEEEFISNTLLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVEL 125 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666654422222222 12222222222222 33334455667766544 4555556666666666
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHh
Q 005601 109 SRISA-EQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKL 187 (688)
Q Consensus 109 e~~~~-~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~EakLqqALqeLR~Qa~ee~ 187 (688)
++... +++..++.|..+|..+..+.......+..++.+--.|+..|+-+.--|=--|+++-.+|..-=+.|+.....-.
T Consensus 126 E~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~ 205 (310)
T PF09755_consen 126 ENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPV 205 (310)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 65554 47888888888888888777777788888888888888888877777777777776666666555555511100
Q ss_pred hhhh-HHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 005601 188 KRLS-DAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELEN 266 (688)
Q Consensus 188 kr~~-Daq~r~nReE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~ 266 (688)
-..+ =...-........+..+.--++.+|.-|.-|+.+|...+.+.++-...... .++.....|...-..|..
T Consensus 206 s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~------eek~ireEN~rLqr~L~~ 279 (310)
T PF09755_consen 206 SAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQYLQ------EEKEIREENRRLQRKLQR 279 (310)
T ss_pred CCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 0000 000000011111122222234444444555666666655555554444443 344444444555555666
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005601 267 EIKKLREELESEKAAREVAW 286 (688)
Q Consensus 267 Ei~rLR~EMe~QL~EYQdLm 286 (688)
|+.| |..+..+|.|++--+
T Consensus 280 E~er-real~R~lsesEssl 298 (310)
T PF09755_consen 280 EVER-REALCRHLSESESSL 298 (310)
T ss_pred HHHH-HHHHHHHHHHHHHHH
Confidence 6655 677888888876543
No 222
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=92.01 E-value=25 Score=39.66 Aligned_cols=237 Identities=17% Similarity=0.217 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHhHHHHHHHHHHhHHHHHHHHhh
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLS----------ASMQSCTEANEIMKSQKVTIDELKTQ 153 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLs----------aa~sdrk~aeeelkelkaei~eLe~q 153 (688)
+..+.+|...|.......++.|.....-..--+.++.--+.|.. ....+..-+....+-++.-+.+...|
T Consensus 93 le~l~~E~~~L~~~k~rle~~L~~~~~P~~ia~eCL~~RekR~~~dlv~D~Ve~EL~kE~eli~~~q~ll~~~~~~a~~Q 172 (421)
T KOG2685|consen 93 LEDLAAEIDDLLHEKRRLERALNALALPLSIAEECLAHREKRQGIDLVHDEVETELHKEVELIENIQELLKKTLERAEEQ 172 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhcccchhhccccHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555566665555544444444432222221 12223333444555566666666667
Q ss_pred H---HHHHhhhhhhhhch--------------------------------------------------------HHHHHH
Q 005601 154 L---DEERNLRRVDRENA--------------------------------------------------------EADLKA 174 (688)
Q Consensus 154 L---ee~RkqLEVDlEN~--------------------------------------------------------EakLqq 174 (688)
| .++|++|+-|+... -.+|.+
T Consensus 173 l~~nr~ar~~Le~Dl~dK~eA~~ID~~c~~L~~~S~~I~~~p~~~R~~~~~~s~e~W~~fs~~nl~~ae~er~~S~~LR~ 252 (421)
T KOG2685|consen 173 LRLNREARQNLERDLSDKQEAYEIDEKCLALNNNSPNISYKPDPTRVPPNSSSPESWAKFSGDNLDRAERERAASAALRE 252 (421)
T ss_pred HHHhHHHHHHHhhhhhhhhhhheechhhhhhcCCCCCeeccCCCccCCCCCCCHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 6 56777888555554 567788
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHhHHH-----------HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHH-
Q 005601 175 AVQKSQLETQEKLKRLSDAASRRELEQ-----------QEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRL- 242 (688)
Q Consensus 175 ALqeLR~Qa~ee~kr~~Daq~r~nReE-----------~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIRe- 242 (688)
+|--+..++..+|..|.++.--..+.- .....+..+|+...-..|+.|..-|-+-..-+-.+..|.-.
T Consensus 253 ~l~~~l~~tan~lr~Q~~~ve~af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~~pLKVAqTRle~R 332 (421)
T KOG2685|consen 253 ALDQTLRETANDLRTQADAVELAFKKRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKEGPLKVAQTRLENR 332 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccHHHHHHHHHHc
Confidence 888888887777777776653332222 23333444445555555554444443333333222222110
Q ss_pred ---HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhhHHHHHHhhHhHhhHHH
Q 005601 243 ---LETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARERIML 319 (688)
Q Consensus 243 ---LE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYrKLLEgEE~RLkgareri~l 319 (688)
===-|+..+..+ -...++.+++.=++.|+..|..-...++.|-.++..|+.+|+.-..-|-+-.+ +.|
T Consensus 333 t~RPnvELCrD~AQ~-~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~~~~rLe~di~~k~nsL~ID~e-------kcm- 403 (421)
T KOG2685|consen 333 TYRPNVELCRDQAQY-RLVDEVHELDDTVAALKEKLDEAEDSLKLLVNHRARLERDIAIKANSLFIDRE-------KCM- 403 (421)
T ss_pred ccCCchHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhccHH-------HHH-
Confidence 000123333333 22578889999999999999999999999999999999999998888777643 444
Q ss_pred hhhhhhHhhccHH
Q 005601 320 RETQLRAFYSTTE 332 (688)
Q Consensus 320 retqlrafystte 332 (688)
|+|.||-++-
T Consensus 404 ---~mR~~yP~~~ 413 (421)
T KOG2685|consen 404 ---LMRKSYPNAD 413 (421)
T ss_pred ---HHHhcCCCch
Confidence 3567886653
No 223
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.96 E-value=6.1 Score=37.33 Aligned_cols=82 Identities=16% Similarity=0.130 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHh---hhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 206 NKLQIAEKQSSLQVESLKLKLDETRERL---VTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAR 282 (688)
Q Consensus 206 ~kaqEElke~R~RVEsL~sKL~dLe~~n---~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EY 282 (688)
..+++++..+...=+.|+..|-.|-..| .+...++..|+.++..=+.+|...-..+=++..++.+||..++.-+.-|
T Consensus 33 ~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 33 ASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444 3445667777777777777887777777788888888888888888888
Q ss_pred HHHHH
Q 005601 283 EVAWA 287 (688)
Q Consensus 283 QdLmD 287 (688)
....+
T Consensus 113 r~Qi~ 117 (120)
T PF12325_consen 113 REQID 117 (120)
T ss_pred HHHHH
Confidence 77654
No 224
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=91.80 E-value=39 Score=41.43 Aligned_cols=38 Identities=18% Similarity=0.109 Sum_probs=17.8
Q ss_pred HHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHH
Q 005601 209 QIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQ 246 (688)
Q Consensus 209 qEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~q 246 (688)
+.....++..+..+.+++..+..+...+..++..+...
T Consensus 716 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 753 (1047)
T PRK10246 716 LDNWRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQ 753 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555544444444444444433
No 225
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.75 E-value=31 Score=40.88 Aligned_cols=30 Identities=27% Similarity=0.269 Sum_probs=18.9
Q ss_pred hhhHHHHHHhhHhHh----------hHHHhhhhhhHhhcc
Q 005601 301 RDLDFERRRLKAARE----------RIMLRETQLRAFYST 330 (688)
Q Consensus 301 KLLEgEE~RLkgare----------ri~lretqlrafyst 330 (688)
+..+-|=.||..-+. |+=|-|.=-+.|||+
T Consensus 293 ~~ve~Ev~Rl~qlK~s~mKeli~k~r~Eleel~~~~h~s~ 332 (660)
T KOG4302|consen 293 EQVEKEVDRLEQLKASNMKELIEKKRSELEELWRLLHYSE 332 (660)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc
Confidence 344577778776553 334555556788888
No 226
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=91.72 E-value=40 Score=41.36 Aligned_cols=70 Identities=24% Similarity=0.249 Sum_probs=47.7
Q ss_pred HHHhhhhHHHHHHHHHHHHHH---Hhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHH
Q 005601 230 RERLVTSDNKVRLLETQVCKE---QNV-SASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAAT 300 (688)
Q Consensus 230 e~~n~ale~RIReLE~qL~~E---r~~-s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYr 300 (688)
.+++-..++|++.|+.||... +.. +.+ .......|.|+.++-+.++.--.+|.++.+-+.+|...|++--
T Consensus 735 ~qq~~q~~srl~~~~aql~~v~~~~~eL~~~-~~~~~~~e~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~lE 808 (984)
T COG4717 735 EQQLTQRESRLESLEAQLEGVAAEAYELSAS-LDQRELKEEELALLEEAIDALDEEVEELHAQVAALSRQIAQLE 808 (984)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhHHhhhh-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566778888888888742 111 111 1222233677888877788778889999999999999998753
No 227
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.71 E-value=2.6 Score=42.81 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005601 85 ISYLHQLKVLRDMLDAKQ 102 (688)
Q Consensus 85 kk~~~EleELk~~L~kKe 102 (688)
.++..|+.+|+.+|+...
T Consensus 96 p~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 96 PDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555554444444
No 228
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=91.67 E-value=13 Score=35.84 Aligned_cols=91 Identities=12% Similarity=0.206 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhh
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRV 163 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEV 163 (688)
.-.+.-++..|..+++.+.++|......+..--+.++-.-.++.........+..++......+.+++..|..++..+
T Consensus 44 FeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r-- 121 (177)
T PF13870_consen 44 FEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKER-- 121 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 667788999999999999999999999888888888888888888888888887777777777777777776666553
Q ss_pred hhhchHHHHHHHHHHHHHH
Q 005601 164 DRENAEADLKAAVQKSQLE 182 (688)
Q Consensus 164 DlEN~EakLqqALqeLR~Q 182 (688)
.++...+.+||.+
T Consensus 122 ------~k~~~~~~~l~~~ 134 (177)
T PF13870_consen 122 ------DKLRKQNKKLRQQ 134 (177)
T ss_pred ------HHHHHHHHHHHHh
Confidence 4566666666666
No 229
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=91.61 E-value=20 Score=37.59 Aligned_cols=71 Identities=14% Similarity=0.237 Sum_probs=55.8
Q ss_pred HHhhhhHHHHHHHHHHHHH----------HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHH
Q 005601 231 ERLVTSDNKVRLLETQVCK----------EQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAAT 300 (688)
Q Consensus 231 ~~n~ale~RIReLE~qL~~----------Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYr 300 (688)
.....++.+++.|+..+.. .+..+ ...+......+..|...+..-+..|..+|--=-.+-.||..=|
T Consensus 149 ~~~~~ae~~v~~Lek~lkr~I~KSrPYfe~K~~~---~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~ISeeIH~~R 225 (239)
T PF05276_consen 149 RIYNEAEQRVQQLEKKLKRAIKKSRPYFELKAKF---NQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQISEEIHEQR 225 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777888888877743 55666 7788888889999999999999999999988888888888776
Q ss_pred hhhH
Q 005601 301 RDLD 304 (688)
Q Consensus 301 KLLE 304 (688)
+...
T Consensus 226 ~~~~ 229 (239)
T PF05276_consen 226 RRRS 229 (239)
T ss_pred hhCC
Confidence 6543
No 230
>PRK11519 tyrosine kinase; Provisional
Probab=91.58 E-value=9 Score=44.67 Aligned_cols=31 Identities=19% Similarity=0.224 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005601 261 VEELENEIKKLREELESEKAAREVAWAKVSG 291 (688)
Q Consensus 261 l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKva 291 (688)
+-..+.++.+|..+.+..-+-|..|+...-.
T Consensus 365 lp~~e~~~~~L~Re~~~~~~lY~~lL~r~~e 395 (719)
T PRK11519 365 MPKTQQEIVRLTRDVESGQQVYMQLLNKQQE 395 (719)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777777777777655443
No 231
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=91.52 E-value=15 Score=44.97 Aligned_cols=72 Identities=24% Similarity=0.228 Sum_probs=48.3
Q ss_pred hhhhhhhhhhhhHHHHHhhhhhhhhhccchhhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 34 LDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKE-MKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRI 111 (688)
Q Consensus 34 lDRVR~LE~ENsrLr~QIe~~eeti~tltrEvs~IK~~YEsE-L~DARklL~kk~~~EleELk~~L~kKeKEL~~ae~~ 111 (688)
-.|||.|-- +...++.+..... ..+..-+|..|=++ +.-+|+++...-..|++.|+..+++-.||+..-...
T Consensus 1028 ~~r~~el~~---rq~~el~~~~~~~---~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~k 1100 (1189)
T KOG1265|consen 1028 AGRVRELVN---RQTQELLEMRREQ---YEEEFELKEEHLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDK 1100 (1189)
T ss_pred hhhHHHHHH---HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888753 2444444444333 45555566665554 456788888888899999999999999998754433
No 232
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=91.33 E-value=5 Score=37.74 Aligned_cols=70 Identities=17% Similarity=0.292 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHH
Q 005601 89 HQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEER 158 (688)
Q Consensus 89 ~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~R 158 (688)
+...+++.+|...+..|...-...-.+-+.-..|.+.+++..+.......-+.+|.++|+++.++|+..+
T Consensus 9 as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK 78 (107)
T PF09304_consen 9 ASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEK 78 (107)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666667777777766666666666666677777777777777777777777777777777777643
No 233
>PRK10869 recombination and repair protein; Provisional
Probab=91.30 E-value=22 Score=40.63 Aligned_cols=66 Identities=15% Similarity=0.197 Sum_probs=53.2
Q ss_pred HHHHHHhhhHhHHHHHhhhHHHHHHhhHhHhhHHHhhhhhhHhhccHHHHHHHHHHHHHHHHHHHh
Q 005601 285 AWAKVSGLELDILAATRDLDFERRRLKAARERIMLRETQLRAFYSTTEEISVLFARQQEQLKAMQK 350 (688)
Q Consensus 285 LmDiKvaLDlEIaAYrKLLEgEE~RLkgareri~lretqlrafystteeis~lfakqqeqlkaMQr 350 (688)
++..---+--+|..|.-.|++...||.-..+||.+=-.=-|.|=.|.++|-..+.+.+++|+.+..
T Consensus 273 ~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~ 338 (553)
T PRK10869 273 ALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDD 338 (553)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhC
Confidence 333334445677888888899999999999999988777788888999999999998888877654
No 234
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.26 E-value=23 Score=37.78 Aligned_cols=71 Identities=15% Similarity=0.160 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhH
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQL 154 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qL 154 (688)
+-.--.++.+++......++++......+-+..+.+.++.+++..+.+..+.++.+|+.++..|.+...-|
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445567777888888888888888888888888888888888888888888888888888777765544
No 235
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=91.26 E-value=30 Score=39.50 Aligned_cols=94 Identities=16% Similarity=0.167 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhchHHHHHHHHHHHH
Q 005601 101 KQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQ 180 (688)
Q Consensus 101 KeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~EakLqqALqeLR 180 (688)
.++++...+..+...|.++...+..|..-.....+.+..+...+.++.+.+..|+...+.+..-+..+..+|...-.--+
T Consensus 67 le~el~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~ 146 (514)
T TIGR03319 67 LERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQ 146 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 33444444555555555555555555444444444455555555555555555555444444333333333333222223
Q ss_pred HHHHHHhhhhhHHH
Q 005601 181 LETQEKLKRLSDAA 194 (688)
Q Consensus 181 ~Qa~ee~kr~~Daq 194 (688)
+||.+.|-...+.+
T Consensus 147 ~eak~~l~~~~~~~ 160 (514)
T TIGR03319 147 EEAKEILLEEVEEE 160 (514)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444443333333
No 236
>PRK02119 hypothetical protein; Provisional
Probab=91.17 E-value=1.1 Score=38.87 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh
Q 005601 112 SAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR 162 (688)
Q Consensus 112 ~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE 162 (688)
...++.++.+|+.+++-.-.-...|++.+..+.++|+.|+.+|.-++.+|.
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~ 54 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLK 54 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788999999999999999999999999999999999999999988775
No 237
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=91.13 E-value=27 Score=38.38 Aligned_cols=17 Identities=12% Similarity=0.128 Sum_probs=7.7
Q ss_pred HHhhHhHhhHHHhhhhh
Q 005601 308 RRLKAARERIMLRETQL 324 (688)
Q Consensus 308 ~RLkgareri~lretql 324 (688)
.+|..|+.++-.-+.+|
T Consensus 298 ~~l~~~~~~l~~a~~~l 314 (457)
T TIGR01000 298 QKLLELESKIKSLKEDS 314 (457)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444554444444444
No 238
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=91.12 E-value=41 Score=40.33 Aligned_cols=89 Identities=18% Similarity=0.234 Sum_probs=61.6
Q ss_pred hhhhhhhhhhHHHHHhhhhhhhhhccchhhHHHHHhhHHH---HHHHHHHH---------HHHHHHHHHHHHHHHHHHHH
Q 005601 36 DFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKE---MKEMKESV---------SISYLHQLKVLRDMLDAKQK 103 (688)
Q Consensus 36 RVR~LE~ENsrLr~QIe~~eeti~tltrEvs~IK~~YEsE---L~DARklL---------~kk~~~EleELk~~L~kKeK 103 (688)
++.+||+.-..+..++..-+-..|.|+.+++..+.-+|+. +.-+|+-+ ..-++-|-++|...+..+++
T Consensus 177 ~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~L~e 256 (739)
T PF07111_consen 177 SLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPEREELLETVQHLQE 256 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 3455555555566666665556677777888777777776 66666666 23355677888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005601 104 ELAEISRISAEQKHEMEDLND 124 (688)
Q Consensus 104 EL~~ae~~~~~~Es~indLea 124 (688)
|-......+--+..+++.|..
T Consensus 257 dR~~L~~T~ELLqVRvqSLt~ 277 (739)
T PF07111_consen 257 DRDALQATAELLQVRVQSLTD 277 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888777777777777766543
No 239
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=91.08 E-value=22 Score=40.20 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=18.6
Q ss_pred HHHHhHHHHHHHHhhHHHHHhhhh
Q 005601 139 IMKSQKVTIDELKTQLDEERNLRR 162 (688)
Q Consensus 139 elkelkaei~eLe~qLee~RkqLE 162 (688)
-.-.|+++|..|+.||+..|-+++
T Consensus 292 ~~~~L~k~vQ~L~AQle~~R~q~e 315 (593)
T KOG4807|consen 292 GHEALEKEVQALRAQLEAWRLQGE 315 (593)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcc
Confidence 355677888888888888888875
No 240
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=91.04 E-value=25 Score=38.03 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=12.2
Q ss_pred HHHHHHHHhHHHHHHHHhhHHHHHhhh
Q 005601 135 EANEIMKSQKVTIDELKTQLDEERNLR 161 (688)
Q Consensus 135 ~aeeelkelkaei~eLe~qLee~RkqL 161 (688)
.+...+..++.++..+..+++..++.+
T Consensus 136 ~l~~~i~~~~~~l~~~~~~~~~~~~l~ 162 (421)
T TIGR03794 136 ALEETIGRLREELAALSREVGKQRGLL 162 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 241
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.02 E-value=4.8 Score=42.90 Aligned_cols=41 Identities=22% Similarity=0.236 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHH
Q 005601 205 INKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLET 245 (688)
Q Consensus 205 a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~ 245 (688)
...+.++++.+....+.|...|..|++....+.+.+..||.
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~ 85 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEE 85 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444333
No 242
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.99 E-value=2.4 Score=42.95 Aligned_cols=22 Identities=14% Similarity=0.221 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005601 88 LHQLKVLRDMLDAKQKELAEIS 109 (688)
Q Consensus 88 ~~EleELk~~L~kKeKEL~~ae 109 (688)
+..+..|++.+++.+.+|..+.
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554443
No 243
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=90.82 E-value=34 Score=39.63 Aligned_cols=97 Identities=9% Similarity=0.134 Sum_probs=76.8
Q ss_pred HhhhhhHHHHHHhHHH----HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHH
Q 005601 186 KLKRLSDAASRRELEQ----QEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRV 261 (688)
Q Consensus 186 e~kr~~Daq~r~nReE----~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l 261 (688)
.||.+|..++...-.+ .--+.....|-+.+..|++....+...+...+..+..+|+.|+..|.--|..| ...+
T Consensus 413 LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NY---E~QL 489 (518)
T PF10212_consen 413 LIKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNY---EEQL 489 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHH
Confidence 4788888888777666 22233445678888888888888888888899999999999999999888888 8888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 262 EELENEIKKLREELESEKAAREVA 285 (688)
Q Consensus 262 ~~lE~Ei~rLR~EMe~QL~EYQdL 285 (688)
..+=.-|.-|.+.+..|-.+-+-|
T Consensus 490 s~MSEHLasmNeqL~~Q~eeI~~L 513 (518)
T PF10212_consen 490 SMMSEHLASMNEQLAKQREEIQTL 513 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887665543
No 244
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=90.78 E-value=20 Score=38.18 Aligned_cols=86 Identities=19% Similarity=0.218 Sum_probs=50.1
Q ss_pred HHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 005601 209 QIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEE-------LENEIKKLREELESEKAA 281 (688)
Q Consensus 209 qEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~-------lE~Ei~rLR~EMe~QL~E 281 (688)
++-++....+|..++.+|+.+.+.-..|+.+|..--.-| ++. .+++.. ...|-.+|..||+.+-..
T Consensus 168 ~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~EL----ER~---qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~ 240 (267)
T PF10234_consen 168 KEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQEL----ERN---QKRLQSLQSVRPAFMDEYEKLEEELQKLYEI 240 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH---HHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 333333444455555555555555555555553211111 111 222222 245677788888888888
Q ss_pred HHHHHHHHHhhhHhHHHHHh
Q 005601 282 REVAWAKVSGLELDILAATR 301 (688)
Q Consensus 282 YQdLmDiKvaLDlEIaAYrK 301 (688)
|=.-+--...|+.++..|.+
T Consensus 241 Y~~kfRNl~yLe~qle~~~~ 260 (267)
T PF10234_consen 241 YVEKFRNLDYLEHQLEEYNR 260 (267)
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 88888888889999888875
No 245
>PRK00295 hypothetical protein; Provisional
Probab=90.75 E-value=1.1 Score=38.29 Aligned_cols=48 Identities=15% Similarity=0.239 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh
Q 005601 115 QKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR 162 (688)
Q Consensus 115 ~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE 162 (688)
++.+|.+|+.+++-.-.-...|++.+..+.++|+.|+++|..++.+|.
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~ 50 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQE 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999988776
No 246
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=90.67 E-value=58 Score=41.38 Aligned_cols=111 Identities=14% Similarity=0.157 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 204 VINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAARE 283 (688)
Q Consensus 204 ~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQ 283 (688)
-++++-+.+-.+-..+... ...=....-....+..||.-+...+..-....+.++.++..+.+|.+++++.+++|+
T Consensus 904 ~~s~a~~~l~~wv~a~~~~----~kv~~~v~p~~~~~~~~e~~~~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~~~~~~~ 979 (1395)
T KOG3595|consen 904 RASLACEGLCLWVIAIDKY----SKVLKVVEPKRQELARLEAELKAAMKELEEKSAELQDLEEKLQRLKDEYEQLIAEKQ 979 (1395)
T ss_pred hhhhhhhhHHHHHHHHHHH----HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555554444433 333333444455555566555555555555677888899999999999999999999
Q ss_pred HHHHHHHhhhHhHHHHHhh---hHHHHHHhhHhHhhHH
Q 005601 284 VAWAKVSGLELDILAATRD---LDFERRRLKAARERIM 318 (688)
Q Consensus 284 dLmDiKvaLDlEIaAYrKL---LEgEE~RLkgareri~ 318 (688)
.+.+-...-...+++..+| |++|..|..++-+-+-
T Consensus 980 ~~~~~~~~~~~k~~~a~~Li~~Ls~e~~rW~~~~~~~~ 1017 (1395)
T KOG3595|consen 980 ELEEDMDACELKLLRAEELIQGLSGEKERWSETSEQFS 1017 (1395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 9999999999988888776 5677777776654443
No 247
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=90.58 E-value=18 Score=35.26 Aligned_cols=62 Identities=24% Similarity=0.288 Sum_probs=33.6
Q ss_pred HHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 211 AEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEK 279 (688)
Q Consensus 211 Elke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL 279 (688)
+++.+..-+.+|++.-..|-+.+--...||.+||..... + ...+..+|.+.++|.++....+
T Consensus 67 el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~----~---~~~l~~~E~ek~q~~e~~~~~v 128 (140)
T PF10473_consen 67 ELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSS----L---ENLLQEKEQEKVQLKEESKSAV 128 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----H---HHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555566666554422 2 4455666666666666554443
No 248
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=90.57 E-value=23 Score=36.59 Aligned_cols=192 Identities=11% Similarity=0.156 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHH
Q 005601 106 AEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQE 185 (688)
Q Consensus 106 ~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~EakLqqALqeLR~Qa~e 185 (688)
..++--+++.++.+..+..-+...+...+.++..+..+...+.+++.+-..+ |.+....|+..+=.-...
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~A-------l~~g~E~LAr~al~~~~~--- 96 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELA-------LQAGNEDLAREALEEKQS--- 96 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHCCCHHHHHHHHHHHHH---
Confidence 4444556666666666666677777766666666666666666655443222 222222332222221222
Q ss_pred HhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhh-hHHHHHHHHH
Q 005601 186 KLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVS-ASWKKRVEEL 264 (688)
Q Consensus 186 e~kr~~Daq~r~nReE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s-~~~~k~l~~l 264 (688)
|+.++..++.+ ...+.+-+..++..|..|..||.+++.+...+..|-.-=+.+-.-.+..+ .++..-...+
T Consensus 97 -----le~~~~~~~~~---~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~~sa~~~f 168 (225)
T COG1842 97 -----LEDLAKALEAE---LQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAF 168 (225)
T ss_pred -----HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHH
Confidence 33333333332 23333444555556666666666666666666655554444433222222 1111122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHhhhHhHHHHHhhhHHHHHHhhHhHhhH
Q 005601 265 ENEIKKLREELESEKAAREVA-WAKVSGLELDILAATRDLDFERRRLKAARERI 317 (688)
Q Consensus 265 E~Ei~rLR~EMe~QL~EYQdL-mDiKvaLDlEIaAYrKLLEgEE~RLkgareri 317 (688)
..|++--++|+..-..|.+| ......||-|++.+-.-=..+ .+|..-+.++
T Consensus 169 -er~e~kiee~ea~a~~~~el~~~~~~dl~~e~a~~~~~~~v~-~~La~lka~~ 220 (225)
T COG1842 169 -ERMEEKIEEREARAEAAAELAEGSGDDLDKEFAQAGAQSAVD-SRLAALKARM 220 (225)
T ss_pred -HHHHHHHHHHHHHHHHhHHhhccCcccHHHHHHHhcccccHH-HHHHHHHHhh
Confidence 23555556677777777777 677888899988887644444 4555444443
No 249
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=90.50 E-value=8.9 Score=44.23 Aligned_cols=83 Identities=19% Similarity=0.332 Sum_probs=40.9
Q ss_pred hhhhhhhhhhhHHHHHhhhhhhhhhccchhhH--HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 35 DDFRSLQRSNTELRKQLESQVLEIDKLRNENR--VVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRIS 112 (688)
Q Consensus 35 DRVR~LE~ENsrLr~QIe~~eeti~tltrEvs--~IK~~YEsEL~DARklL~kk~~~EleELk~~L~kKeKEL~~ae~~~ 112 (688)
.+...|+.+|.+|+.+.--. ..+|++-++. ....+-.++|.|+-.- .-.++..|..|.+++...+...
T Consensus 166 ekLk~~~een~~lr~k~~ll--k~Et~~~~~keq~~y~~~~KelrdtN~q--------~~s~~eel~~kt~el~~q~Ee~ 235 (596)
T KOG4360|consen 166 EKLKPLEEENTQLRSKAMLL--KTETLTYEEKEQQLYGDCVKELRDTNTQ--------ARSGQEELQSKTKELSRQQEEN 235 (596)
T ss_pred hhcCChHHHHHHHHHHHHHH--HhhhcchhHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888999888774322 2223333332 2333456666554332 2333344455555555444444
Q ss_pred HHHHHHHHHHHHHHH
Q 005601 113 AEQKHEMEDLNDRLS 127 (688)
Q Consensus 113 ~~~Es~indLearLs 127 (688)
..+.++|-+++.++-
T Consensus 236 skLlsql~d~qkk~k 250 (596)
T KOG4360|consen 236 SKLLSQLVDLQKKIK 250 (596)
T ss_pred HHHHHHHHhhHHHHH
Confidence 444444444444433
No 250
>PRK02793 phi X174 lysis protein; Provisional
Probab=90.40 E-value=1.3 Score=38.23 Aligned_cols=50 Identities=14% Similarity=0.231 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh
Q 005601 113 AEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR 162 (688)
Q Consensus 113 ~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE 162 (688)
..++.+|.+|+.+++=.-.-...|++.+..+.++|+.|+.+|..++.+|.
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 53 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLK 53 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999999999999999999999999999999999988876
No 251
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=90.32 E-value=3.1 Score=35.39 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=35.4
Q ss_pred HHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 005601 207 KLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQ 251 (688)
Q Consensus 207 kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er 251 (688)
.++||++..+...-.+.++|.+.+.+|..|...|..|+.+|..-|
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567888888888888888888888888888888888887776543
No 252
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=90.21 E-value=36 Score=38.21 Aligned_cols=140 Identities=22% Similarity=0.284 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh
Q 005601 119 MEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRE 198 (688)
Q Consensus 119 indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~n 198 (688)
|.+|++.-.+-.++-+.-.+...-|.++...|..|++-...+.. |..-+-.+|-.|..+|-|||----+-.-
T Consensus 120 i~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~k--------K~E~~k~Kl~~qLeeEk~RHeqis~mLi 191 (561)
T KOG1103|consen 120 IKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKK--------KAEIAKDKLEMQLEEEKKRHEQISLMLI 191 (561)
T ss_pred HHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555554433222211 1111223444454556666532222222
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHH
Q 005601 199 LEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSA----SWKKRVEELENEIKKLREE 274 (688)
Q Consensus 199 ReE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~----~~~k~l~~lE~Ei~rLR~E 274 (688)
-+-+++..++-|+ +...+.|..||. .--.|+.-+|..+..||.+-. ...+.+.+++-|...||.+
T Consensus 192 lEcKka~~KaaEe----gqKA~ei~Lkle-------kdksr~~k~eee~aaERerglqteaqvek~i~EfdiEre~LRAe 260 (561)
T KOG1103|consen 192 LECKKALLKAAEE----GQKAEEIMLKLE-------KDKSRTKKGEEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAE 260 (561)
T ss_pred HHHHHHHHHHHHh----hhhHHHHHHhhc-------cCccccCCChHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 2225555555433 222333444333 333445556666666665431 1234445555555555555
Q ss_pred HHH
Q 005601 275 LES 277 (688)
Q Consensus 275 Me~ 277 (688)
++.
T Consensus 261 l~r 263 (561)
T KOG1103|consen 261 LER 263 (561)
T ss_pred HHH
Confidence 543
No 253
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=90.21 E-value=30 Score=40.98 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=8.4
Q ss_pred HhhHHHhhhhhhHhhc
Q 005601 314 RERIMLRETQLRAFYS 329 (688)
Q Consensus 314 reri~lretqlrafys 329 (688)
+-+|+=-.-..|-|+-
T Consensus 306 ~N~i~eLkGnIRV~CR 321 (670)
T KOG0239|consen 306 HNEILELKGNIRVFCR 321 (670)
T ss_pred HHHHHHhhcCceEEEE
Confidence 3445544456666653
No 254
>PRK00736 hypothetical protein; Provisional
Probab=90.11 E-value=1.2 Score=38.06 Aligned_cols=49 Identities=14% Similarity=0.266 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh
Q 005601 114 EQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR 162 (688)
Q Consensus 114 ~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE 162 (688)
+.+.+|.+|+.+++-.-.-...|++.+..+.++|++|+++|..+..+|.
T Consensus 2 ~~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~ 50 (68)
T PRK00736 2 DAEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFL 50 (68)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999988876
No 255
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=89.96 E-value=33 Score=37.45 Aligned_cols=79 Identities=14% Similarity=0.107 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHH
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRISAEQK--------------HEMEDLNDRLSASMQSCTEANEIMKSQKVTIDE 149 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~E--------------s~indLearLsaa~sdrk~aeeelkelkaei~e 149 (688)
+-+++.|.++++.+.+..+.......+...++. +....|..-|..+.-..+.|..++..++..+.+
T Consensus 18 Le~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E 97 (319)
T PF09789_consen 18 LEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNE 97 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777777777766666666666555 345677788888888899999999999999999
Q ss_pred HHhhHHHHHhhhh
Q 005601 150 LKTQLDEERNLRR 162 (688)
Q Consensus 150 Le~qLee~RkqLE 162 (688)
++.....+|+++.
T Consensus 98 ~qGD~KlLR~~la 110 (319)
T PF09789_consen 98 AQGDIKLLREKLA 110 (319)
T ss_pred HhchHHHHHHHHH
Confidence 9998888888776
No 256
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=89.96 E-value=6.8 Score=41.36 Aligned_cols=133 Identities=19% Similarity=0.124 Sum_probs=81.3
Q ss_pred ccccccccccccCCCCCCcchhhhhhhhhhhhHHHHHhhhhhhhhhccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 005601 14 VSDNKRLKGIGICSPDGPLSLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKV 93 (688)
Q Consensus 14 ~~e~kr~kglgig~~~gpislDRVR~LE~ENsrLr~QIe~~eeti~tltrEvs~IK~~YEsEL~DARklL~kk~~~EleE 93 (688)
++-..|+| |-||--=--|.++=||. |..|+-.|.=+.+.+-+ +++..+|..|+- | |.- +.-...|.++
T Consensus 86 VGhiERmK-~PiGHDvEhiD~elvrk-El~nAlvRAGLktL~~v-----~~~~d~ke~~ee-~---kek-l~E~~~Ekee 153 (290)
T COG4026 86 VGHIERMK-IPIGHDVEHIDVELVRK-ELKNALVRAGLKTLQRV-----PEYMDLKEDYEE-L---KEK-LEELQKEKEE 153 (290)
T ss_pred hhhhheec-cCCCCCccccCHHHHHH-HHHHHHHHHHHHHHhcc-----chhhHHHHHHHH-H---HHH-HHHHHHHHHH
Confidence 45556666 55666556678888875 77788777777665532 567777777762 2 111 1223344455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhh
Q 005601 94 LRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDR 165 (688)
Q Consensus 94 Lk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDl 165 (688)
|...|..++.++. ...-++..|+...+...-.++.+..++-.|++..++|+..++-.-.-+-.|+
T Consensus 154 L~~eleele~e~e-------e~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~~~i~dl 218 (290)
T COG4026 154 LLKELEELEAEYE-------EVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEEELISDL 218 (290)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 5555555554444 4444555666666666667788888888888888888887654433333333
No 257
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=89.92 E-value=8.6 Score=41.52 Aligned_cols=134 Identities=16% Similarity=0.247 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHH----------------HHhhhh----hhhhchHHH-
Q 005601 113 AEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE----------------ERNLRR----VDRENAEAD- 171 (688)
Q Consensus 113 ~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee----------------~RkqLE----VDlEN~Eak- 171 (688)
..+..+|+-+++.|+.-++.+..|+.+++.++.+|+-++++.+. -|+.+. .+.+|.-..
T Consensus 134 ~~F~~rf~~Ied~~~~kK~~I~~L~~qisaLdkqi~ai~Kkid~yWgkda~gk~~tR~~~q~k~~ke~~e~dkqNd~~~f 213 (308)
T PF06717_consen 134 QDFNYRFNQIEDEYNRKKNKIPGLNKQISALDKQIVAINKKIDRYWGKDANGKQLTRYEVQRKLLKERDEFDKQNDPEKF 213 (308)
T ss_pred hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccHHHHHHHHHHHHHHhhhccChHHH
Confidence 45666777777777777777777777777777777666655432 222222 566666111
Q ss_pred --------HHHHHHHHHHHHH----HHhhhhhHHHHHHhHHH-----HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhh
Q 005601 172 --------LKAAVQKSQLETQ----EKLKRLSDAASRRELEQ-----QEVINKLQIAEKQSSLQVESLKLKLDETRERLV 234 (688)
Q Consensus 172 --------LqqALqeLR~Qa~----ee~kr~~Daq~r~nReE-----~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ 234 (688)
-+=||-.+|.+-. -=|++--|+-+...|.+ ++-..+++-....+---+--|+.|.++|..+.+
T Consensus 214 ~~kY~~eVy~PAl~AC~k~~~~c~~~pIr~kRd~vi~eqkr~~~~q~~~~~ekik~d~~~ldkg~~pL~~k~~el~~q~~ 293 (308)
T PF06717_consen 214 EEKYYKEVYQPALAACQKQSEECYEAPIRAKRDAVINEQKRQYFLQSQEMSEKIKADMATLDKGQYPLNMKVSELNSQQS 293 (308)
T ss_pred HHhcccccccHHHHHhccccccCccchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 1223333333300 00111134444444444 444556666666677777788999999999999
Q ss_pred hhHHHHHHHHHH
Q 005601 235 TSDNKVRLLETQ 246 (688)
Q Consensus 235 ale~RIReLE~q 246 (688)
++.-+|++|+.+
T Consensus 294 ~i~~~i~dl~~~ 305 (308)
T PF06717_consen 294 AISMKIRDLNDA 305 (308)
T ss_pred HHHHHHHHHHHH
Confidence 999999999876
No 258
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=89.87 E-value=6 Score=35.09 Aligned_cols=75 Identities=24% Similarity=0.305 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHH
Q 005601 171 DLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKE 250 (688)
Q Consensus 171 kLqqALqeLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~E 250 (688)
+|..-|.-||.+ |+.+.+.. ..++.+-+.+..|+..--+.+...-+++-+||.+
T Consensus 1 Rl~elLd~ir~E--------f~~~~~e~--------------~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~---- 54 (79)
T PF08581_consen 1 RLNELLDAIRQE--------FENLSQEA--------------NSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQA---- 54 (79)
T ss_dssp HHHHHHHHHHHH--------HHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHH--------HHHHHHHH--------------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 356677888888 88776632 2334444555555555555666666777777765
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005601 251 QNVSASWKKRVEELENEIKKLREELES 277 (688)
Q Consensus 251 r~~s~~~~k~l~~lE~Ei~rLR~EMe~ 277 (688)
| .+....+|.||.+||.+|++
T Consensus 55 ---h---~kmK~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 55 ---H---RKMKQQYEEEIARLRRELEQ 75 (79)
T ss_dssp ---H---HHHHHHHHHHHHHHHHHHCH
T ss_pred ---H---HHHHHHHHHHHHHHHHHHHh
Confidence 4 55566669999999999875
No 259
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=89.81 E-value=19 Score=43.32 Aligned_cols=118 Identities=17% Similarity=0.194 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHH-hHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHH
Q 005601 169 EADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQS-SLQVESLKLKLDETRERLVTSDNKVRLLETQV 247 (688)
Q Consensus 169 EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaqEElke~-R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL 247 (688)
....+=|||-||.| -+|+| |.-+-.--.++|.++-- -.+--+-+..|-.|++-|..|++++.+....+
T Consensus 382 q~EIALA~QplrsE---------NaqLr--RrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~ 450 (861)
T PF15254_consen 382 QVEIALAMQPLRSE---------NAQLR--RRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQ 450 (861)
T ss_pred hhhhHhhhhhhhhh---------hHHHH--HHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhH
Confidence 66677789999999 45554 22222222344433322 22334556677777777777777776643333
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhhHHHHHHhh
Q 005601 248 CKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLK 311 (688)
Q Consensus 248 ~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYrKLLEgEE~RLk 311 (688)
+ .+...-.+|.+.+++|+.|++-+..+-.-=|.|+---++..+.|=.|+|
T Consensus 451 e--------------~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik 500 (861)
T PF15254_consen 451 E--------------LLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIK 500 (861)
T ss_pred H--------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2 2333334455566666666666655555555555555555555544444
No 260
>PRK04325 hypothetical protein; Provisional
Probab=89.72 E-value=1.5 Score=37.97 Aligned_cols=49 Identities=22% Similarity=0.208 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh
Q 005601 114 EQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR 162 (688)
Q Consensus 114 ~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE 162 (688)
..+.+|.+|+.+++---.....|++.+..+.++|++|+++|..+..+|.
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~ 54 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMR 54 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999988775
No 261
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=89.70 E-value=4.3 Score=47.39 Aligned_cols=109 Identities=16% Similarity=0.224 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHH
Q 005601 169 EADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVC 248 (688)
Q Consensus 169 EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~ 248 (688)
=.-|++||..+..+.+ -|++.........++..+..++..|..++..|+..|..|...+.+|.
T Consensus 387 G~~l~eal~~~~e~~~-------------p~e~~~~~~~e~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k---- 449 (652)
T COG2433 387 GYPLAEALSKVKEEER-------------PREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELK---- 449 (652)
T ss_pred CCcHHHHHHHHHhhhc-------------cccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3568889988888833 22222223333334444444455555555555555544444444432
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHhHHHHHhhhHHHHHH
Q 005601 249 KEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVS-GLELDILAATRDLDFERRR 309 (688)
Q Consensus 249 ~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKv-aLDlEIaAYrKLLEgEE~R 309 (688)
+.+.+|+.++.+++.++...+. -+.++ ++|-+|.-..|-|.-+..|
T Consensus 450 ----------~eie~L~~~l~~~~r~~~~~~~-----~~rei~~~~~~I~~L~~~L~e~~~~ 496 (652)
T COG2433 450 ----------REIEKLESELERFRREVRDKVR-----KDREIRARDRRIERLEKELEEKKKR 496 (652)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555543221 12222 2445555554444444443
No 262
>PLN02939 transferase, transferring glycosyl groups
Probab=89.69 E-value=62 Score=40.14 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhhHhHHHH--HhhhHHHHHHhhHhHhhHHHhhhhhhHhhcc
Q 005601 282 REVAWAKVSGLELDILAA--TRDLDFERRRLKAARERIMLRETQLRAFYST 330 (688)
Q Consensus 282 YQdLmDiKvaLDlEIaAY--rKLLEgEE~RLkgareri~lretqlrafyst 330 (688)
+..-|++=+.|=|=|.+. .+++..++.. .-|+-.+=|.-.++-||..
T Consensus 409 ~~~~~~~~~~lll~id~~~~~~~~~~~~a~--~lr~~~~~~~~~~~~~~~~ 457 (977)
T PLN02939 409 DDMPSEFWSRILLLIDGWLLEKKISNNDAK--LLREMVWKRDGRIREAYLS 457 (977)
T ss_pred hhCCHHHHHHHHHHHHHHHHhccCChhhHH--HHHHHHHhhhhhHHHHHHH
Confidence 344566667777788877 7888888764 4688888899999999964
No 263
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=89.68 E-value=26 Score=35.87 Aligned_cols=67 Identities=13% Similarity=0.079 Sum_probs=43.2
Q ss_pred hhhhHHHHHHhHHHHHHHHHHHHHHHHH-hHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 005601 188 KRLSDAASRRELEQQEVINKLQIAEKQS-SLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVS 254 (688)
Q Consensus 188 kr~~Daq~r~nReE~~~a~kaqEElke~-R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s 254 (688)
+|.|-.+....-.|...|..+-..++.. .......+.-+..++..++..+.++.+|...|..-....
T Consensus 141 ~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~ 208 (264)
T PF06008_consen 141 KRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKT 208 (264)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666667777766666665 556666666666677777777777777777766554444
No 264
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=89.64 E-value=7.1 Score=38.99 Aligned_cols=84 Identities=24% Similarity=0.343 Sum_probs=48.2
Q ss_pred cccccccCCCCCCcch--hhhhhhhhhhhHHHHHhhhhhhhhhccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 19 RLKGIGICSPDGPLSL--DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRD 96 (688)
Q Consensus 19 r~kglgig~~~gpisl--DRVR~LE~ENsrLr~QIe~~eeti~tltrEvs~IK~~YEsEL~DARklL~kk~~~EleELk~ 96 (688)
-++.++-..|.-.+.- ..+|.|+.||.+|+.=|++|+-+. +++..||+.+...|..
T Consensus 52 ~l~~~~~~~~~~~l~~En~qi~~Lq~EN~eL~~~leEhq~al----------------------elIM~KyReq~~~l~~ 109 (181)
T PF05769_consen 52 ELNELSKNRPRAGLQQENRQIRQLQQENRELRQSLEEHQSAL----------------------ELIMSKYREQMSQLMM 109 (181)
T ss_pred HHHHHhhcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHH
Confidence 3455555555533332 246899999999999888888776 4567777777766642
Q ss_pred H--HHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 005601 97 M--LDAKQKELA---EISRISAEQKHEMEDLND 124 (688)
Q Consensus 97 ~--L~kKeKEL~---~ae~~~~~~Es~indLea 124 (688)
. .+....-+. ..++.+..+..+|++.-+
T Consensus 110 ~~k~~~~~~~~~~~~~~~~~~~~~~~kI~EM~~ 142 (181)
T PF05769_consen 110 ASKFDDTEPYLEANEQLSKEVQSQAEKICEMAA 142 (181)
T ss_pred HhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 2 222233233 334444444445554443
No 265
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=89.61 E-value=45 Score=38.45 Aligned_cols=95 Identities=13% Similarity=0.098 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhh
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRV 163 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEV 163 (688)
++.+..=+...++.|.+..++-..++-.++-...-+-.|++||.+.++.+-+.-..--+..+-+.+-+.+++.+. +|+-
T Consensus 392 lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ-~lkg 470 (527)
T PF15066_consen 392 LQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQ-QLKG 470 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHH-HHHH
Confidence 455555566666667777777777777777777888889999999888887766655555555555444443332 3335
Q ss_pred hhhchHHHHHHHHHHHHHH
Q 005601 164 DRENAEADLKAAVQKSQLE 182 (688)
Q Consensus 164 DlEN~EakLqqALqeLR~Q 182 (688)
++|++ ..+||+.|..+
T Consensus 471 elEka---t~SALdlLkrE 486 (527)
T PF15066_consen 471 ELEKA---TTSALDLLKRE 486 (527)
T ss_pred HHHHH---HHHHHHHHHHH
Confidence 66654 44667666655
No 266
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=89.56 E-value=4.4 Score=34.99 Aligned_cols=66 Identities=17% Similarity=0.198 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhh
Q 005601 95 RDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNL 160 (688)
Q Consensus 95 k~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~Rkq 160 (688)
.......+..|..+.+.+.-++..+..|...=..+......+-.++..|+.++..|+++|+..|.|
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~~ 69 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELRAQ 69 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 333444566666777777777788888888888888888888888888888888888888887764
No 267
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=89.50 E-value=28 Score=36.07 Aligned_cols=66 Identities=21% Similarity=0.289 Sum_probs=25.7
Q ss_pred HhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHH
Q 005601 232 RLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDIL 297 (688)
Q Consensus 232 ~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIa 297 (688)
.+..++.+++.|+.++...+........+...++.++.+|+.+...+-.+...|-.....+..+|.
T Consensus 27 ~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~ 92 (246)
T PF00769_consen 27 ALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIA 92 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444443333333334444555555555555555555555555555555555554
No 268
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=89.27 E-value=46 Score=38.13 Aligned_cols=22 Identities=18% Similarity=0.013 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHh
Q 005601 204 VINKLQIAEKQSSLQVESLKLK 225 (688)
Q Consensus 204 ~a~kaqEElke~R~RVEsL~sK 225 (688)
...=++|.+...+.+|+.+..+
T Consensus 141 ll~Pl~e~l~~f~~~v~~~~~~ 162 (475)
T PRK10361 141 LLSPLREQLDGFRRQVQDSFGK 162 (475)
T ss_pred HHhhHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544433
No 269
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=89.13 E-value=30 Score=35.79 Aligned_cols=35 Identities=6% Similarity=0.208 Sum_probs=23.3
Q ss_pred HHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh
Q 005601 128 ASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR 162 (688)
Q Consensus 128 aa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE 162 (688)
.++..+..+++.+..++..+..+..+++.+|+++.
T Consensus 89 ~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~ 123 (225)
T COG1842 89 EALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLA 123 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777777777776666666653
No 270
>PF15294 Leu_zip: Leucine zipper
Probab=89.03 E-value=36 Score=36.60 Aligned_cols=224 Identities=17% Similarity=0.246 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhchHH------------------
Q 005601 110 RISAEQKHEMED-LNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEA------------------ 170 (688)
Q Consensus 110 ~~~~~~Es~ind-LearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~Ea------------------ 170 (688)
..++..+++|+| .+.||..-.-..++..+.+.+++. +.+..++.++-|...
T Consensus 8 ~~Lk~Vds~F~Dlk~srL~e~t~T~~EV~~~ldgL~~----------~v~~~vesEL~N~~htn~lllrql~~qAek~~l 77 (278)
T PF15294_consen 8 QHLKEVDSCFQDLKSSRLREDTYTSDEVTEMLDGLQV----------VVKSEVESELINTSHTNVLLLRQLFSQAEKWYL 77 (278)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHH----------HHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHH
Confidence 356778889999 788888776677777777777774 444445555555422
Q ss_pred HHHHHHHHHHHH-HHHHhhhhhHHHHHHhH----------H-----------HHHHHHHHHHHHHHHhHHHHHHHHhHHH
Q 005601 171 DLKAAVQKSQLE-TQEKLKRLSDAASRREL----------E-----------QQEVINKLQIAEKQSSLQVESLKLKLDE 228 (688)
Q Consensus 171 kLqqALqeLR~Q-a~ee~kr~~Daq~r~nR----------e-----------E~~~a~kaqEElke~R~RVEsL~sKL~d 228 (688)
+|+--+.+|-.. .-|++.++-..+..... - -...|..+++|...++.|+-+|..+...
T Consensus 78 kl~~diselEn~eLLe~i~~~E~~~~~~~~~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~ 157 (278)
T PF15294_consen 78 KLQTDISELENRELLEQIAEFEKQEFTSSFKPNQETSKPKLEPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQATS 157 (278)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHhhhcccCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222111 11122222222222111 0 0566777777777777777777777777
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhhHHH
Q 005601 229 TRERLVTSDNKVRLLETQVCKEQNV--SASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFE 306 (688)
Q Consensus 229 Le~~n~ale~RIReLE~qL~~Er~~--s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYrKLLEgE 306 (688)
.-.....++..+.+|..-...-+.. .......+..+|..|..|..+++.-+...... --+|.-.+.+..
T Consensus 158 ~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~~~d~~~~---~k~L~e~L~~~K------ 228 (278)
T PF15294_consen 158 ALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKALQDKESQ---QKALEETLQSCK------ 228 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH------
Confidence 6666677777777766622222221 01234455666666666666655544333321 112322222221
Q ss_pred HHHhhHhHhhHHHhhhhhhHhhccHHHHHH---HHHHHHHHHHHHHhhhc
Q 005601 307 RRRLKAARERIMLRETQLRAFYSTTEEISV---LFARQQEQLKAMQKTLE 353 (688)
Q Consensus 307 E~RLkgareri~lretqlrafystteeis~---lfakqqeqlkaMQrTLe 353 (688)
.-|=..++.+-+-+-=|...|+-|--.+. +..+..+|+|+..+-|.
T Consensus 229 -helL~~QeqL~~aekeLekKfqqT~ay~NMk~~ltkKn~QiKeLRkrl~ 277 (278)
T PF15294_consen 229 -HELLRVQEQLSLAEKELEKKFQQTAAYRNMKEILTKKNEQIKELRKRLA 277 (278)
T ss_pred -HHHHhcchhhhcchhhHHHHhCccHHHHHhHHHHHhccHHHHHHHHHhc
Confidence 11222334444455555555555544333 36788899999887764
No 271
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=88.94 E-value=11 Score=35.75 Aligned_cols=49 Identities=18% Similarity=0.336 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhH
Q 005601 106 AEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQL 154 (688)
Q Consensus 106 ~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qL 154 (688)
......+..++..+.+|+.||.+++.-..+-.+++.+|++.|..|+.-+
T Consensus 64 ~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 64 RALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 3344566677888888888999998888888888888888888777654
No 272
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=88.81 E-value=8.8 Score=45.62 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=10.3
Q ss_pred hhhhchHHHHHHHHHHHHHH
Q 005601 163 VDRENAEADLKAAVQKSQLE 182 (688)
Q Consensus 163 VDlEN~EakLqqALqeLR~Q 182 (688)
.-++.+..+.++.|.+.|.+
T Consensus 566 ~~~~~~~~~a~~~l~~a~~~ 585 (782)
T PRK00409 566 KLLEEAEKEAQQAIKEAKKE 585 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555
No 273
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=88.77 E-value=14 Score=31.45 Aligned_cols=61 Identities=16% Similarity=0.222 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhhHHHHHHhhHhHh
Q 005601 255 ASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARE 315 (688)
Q Consensus 255 ~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYrKLLEgEE~RLkgare 315 (688)
.+....+..++..|..++.++...-.+++.+-..-..--.+...+.+|.+-...+.+.+..
T Consensus 48 ~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~e~~~~~~~~~~~ 108 (123)
T PF02050_consen 48 RNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEKLKERRREEYQQEEE 108 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666666666666666555555555666667777777766655555443
No 274
>PF13166 AAA_13: AAA domain
Probab=88.73 E-value=50 Score=37.82 Aligned_cols=14 Identities=36% Similarity=0.603 Sum_probs=9.2
Q ss_pred cccccc-cCcccccc
Q 005601 353 EDEENY-ENTSVDID 366 (688)
Q Consensus 353 eDeeNy-ent~~~~D 366 (688)
.+.+++ .+..|-||
T Consensus 520 ~~~~~~~~~~iiViD 534 (712)
T PF13166_consen 520 EDDEDINKKKIIVID 534 (712)
T ss_pred hcccccCcCceEEEC
Confidence 455556 67777777
No 275
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=88.60 E-value=27 Score=39.47 Aligned_cols=169 Identities=15% Similarity=0.108 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhchHHHHHHHHHHHHHHH
Q 005601 104 ELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLET 183 (688)
Q Consensus 104 EL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~EakLqqALqeLR~Qa 183 (688)
-...++..+..-|..+|.|+.+... +.++-.+.++.+.+..|.++|.. |...|..
T Consensus 217 A~~ia~aLL~~sE~~VN~Ls~rar~---------D~v~~Ae~ev~~Ae~rl~~Ar~a---------------L~~fRn~- 271 (434)
T PRK15178 217 AEFFAQRILSFAEQHVNTVSARMQK---------ERILWLENDVKSAQENLGAARLE---------------LLKIQHI- 271 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHh-
Confidence 4456677788888888888887643 33444444444444444333322 2222222
Q ss_pred HHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 005601 184 QEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEE 263 (688)
Q Consensus 184 ~ee~kr~~Daq~r~nReE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~ 263 (688)
....|-. ..---....|+.++.++-+.+.++..|..-+..---+...+..||.-||.|+..||.+-....--
T Consensus 272 ----~gvlDP~-~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~--- 343 (434)
T PRK15178 272 ----QKDIDPK-ETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGS--- 343 (434)
T ss_pred ----CCCcChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCC---
Confidence 0000000 00001145667777777777777777766666666778888888999999998888776321100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHH--HHh-hhHHHHHHhhHhHhhHHH
Q 005601 264 LENEIKKLREELESEKAAREVAWAKVSGLELDILA--ATR-DLDFERRRLKAARERIML 319 (688)
Q Consensus 264 lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaA--YrK-LLEgEE~RLkgareri~l 319 (688)
.-+...+.+|+.| .||.|++. |.- |-..|..|....|..+-|
T Consensus 344 ---------~~la~~laeYe~L-----~le~efAe~~y~sAlaaLE~AR~EA~RQ~~YL 388 (434)
T PRK15178 344 ---------QGSSESLSLFEDL-----RLQSEIAKARWESALQTLQQGKLQALRERQYL 388 (434)
T ss_pred ---------CchhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhe
Confidence 0124456667764 35555532 222 334566777776655443
No 276
>PRK00106 hypothetical protein; Provisional
Probab=88.56 E-value=54 Score=38.01 Aligned_cols=11 Identities=36% Similarity=0.477 Sum_probs=7.4
Q ss_pred hhhhhhhhhhh
Q 005601 526 TIRTADLLASE 536 (688)
Q Consensus 526 ~irt~dllase 536 (688)
++-.||-|++-
T Consensus 434 IV~~AD~lsa~ 444 (535)
T PRK00106 434 IVAAADALSSA 444 (535)
T ss_pred HHHHHHHhccC
Confidence 77778877543
No 277
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=88.49 E-value=64 Score=38.76 Aligned_cols=113 Identities=12% Similarity=0.114 Sum_probs=53.6
Q ss_pred hhhhhhhhhhhHHHHHhhhhhhhhhccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Q 005601 35 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISR---I 111 (688)
Q Consensus 35 DRVR~LE~ENsrLr~QIe~~eeti~tltrEvs~IK~~YEsEL~DARklL~kk~~~EleELk~~L~kKeKEL~~ae~---~ 111 (688)
.|+--||.+-..++.++......+|.|...+..++.-++. -+.--++++++++++|.+=...-.+....+- .
T Consensus 34 ~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~-----~e~~~~~lr~e~ke~K~rE~rll~dyselEeENis 108 (717)
T PF09730_consen 34 QRILELENELKQLRQELSNVQAENERLSQLNQELRKECED-----LELERKRLREEIKEYKFREARLLQDYSELEEENIS 108 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3455566666666666655555555444444433332211 0001445555555555443333333332222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHh
Q 005601 112 SAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKT 152 (688)
Q Consensus 112 ~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~ 152 (688)
..-+-+.+..-+.+|-..+-+.+.+++++.-+..++.++-.
T Consensus 109 lQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~r 149 (717)
T PF09730_consen 109 LQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAAR 149 (717)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223334444555666666666666666666665555433
No 278
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.03 E-value=57 Score=37.60 Aligned_cols=154 Identities=15% Similarity=0.180 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh---hhhhc
Q 005601 91 LKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR---VDREN 167 (688)
Q Consensus 91 leELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE---VDlEN 167 (688)
+++|.+.++.+--.+..++-.... +.+++.++-.++.=+..+-+.+++=.+.+++|..+|.+.+++.. ---+|
T Consensus 243 neel~ae~kqh~v~~~ales~~sq----~~e~~selE~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed 318 (521)
T KOG1937|consen 243 NEELQAEYKQHLVEYKALESKRSQ----FEEQNSELEKLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWED 318 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544444444 44444444455555666777777778888888888888887776 22333
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhh--HHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHH--hhhhHHHHHHH
Q 005601 168 AEADLKAAVQKSQLETQEKLKRLS--DAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRER--LVTSDNKVRLL 243 (688)
Q Consensus 168 ~EakLqqALqeLR~Qa~ee~kr~~--Daq~r~nReE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~--n~ale~RIReL 243 (688)
..--|.+....||.+ ++-+- +..++.-++-....-++-++...--+--..|+++|+.+=.. --.+..||.++
T Consensus 319 ~R~pll~kkl~Lr~~----l~~~e~e~~e~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi 394 (521)
T KOG1937|consen 319 TRQPLLQKKLQLREE----LKNLETEDEEIRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEI 394 (521)
T ss_pred HhhhHHHHHHHHHHH----HhcccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 333333344444444 11110 01122222222222223333333333334555555544331 23456677776
Q ss_pred HHHHHHHHh
Q 005601 244 ETQVCKEQN 252 (688)
Q Consensus 244 E~qL~~Er~ 252 (688)
=.....-+.
T Consensus 395 ~gniRKq~~ 403 (521)
T KOG1937|consen 395 DGNIRKQEQ 403 (521)
T ss_pred HhHHHHHHH
Confidence 655544433
No 279
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=88.02 E-value=40 Score=35.81 Aligned_cols=99 Identities=16% Similarity=0.203 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 202 QEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAA 281 (688)
Q Consensus 202 ~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~E 281 (688)
..+..-+.+++.+++.++.....+|.+.+.++.... ++.+ -.. ....+..++.++..++.++....+-
T Consensus 169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d-----~~~~----~~~---~~~~i~~L~~~l~~~~~~l~~l~~~ 236 (362)
T TIGR01010 169 KDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFD-----PKAQ----SSA---QLSLISTLEGELIRVQAQLAQLRSI 236 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC-----hHHH----HHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455566666777777777777777777666654442 1111 001 1344555666666666555544333
Q ss_pred HHHHHHHHHhhhHhHHHHHhhhHHHHHHhhH
Q 005601 282 REVAWAKVSGLELDILAATRDLDFERRRLKA 312 (688)
Q Consensus 282 YQdLmDiKvaLDlEIaAYrKLLEgEE~RLkg 312 (688)
|-+-=-.+.+|..+|++.++.|..|..|+-|
T Consensus 237 ~~~~~P~v~~l~~~i~~l~~~i~~e~~~i~~ 267 (362)
T TIGR01010 237 TPEQNPQVPSLQARIKSLRKQIDEQRNQLSG 267 (362)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3333344667777777777777777777654
No 280
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=87.93 E-value=11 Score=44.82 Aligned_cols=48 Identities=25% Similarity=0.289 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHH
Q 005601 108 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLD 155 (688)
Q Consensus 108 ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLe 155 (688)
|..........++++=++|...........+++..++.++.+++..|+
T Consensus 502 A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~ 549 (771)
T TIGR01069 502 AKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELE 549 (771)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444443333333333333333333333333333
No 281
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=87.75 E-value=31 Score=34.23 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh
Q 005601 132 SCTEANEIMKSQKVTIDELKTQLDEERNLRR 162 (688)
Q Consensus 132 drk~aeeelkelkaei~eLe~qLee~RkqLE 162 (688)
+...+...+....+++++|+...-.+|+.|-
T Consensus 35 EL~evk~~v~~~I~evD~Le~~er~aR~rL~ 65 (159)
T PF05384_consen 35 ELEEVKEEVSEVIEEVDKLEKRERQARQRLA 65 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444555555555555555553
No 282
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.41 E-value=18 Score=41.34 Aligned_cols=105 Identities=17% Similarity=0.204 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh-
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR- 162 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE- 162 (688)
+......++.+....+....++..+++.....|.++..++.++.-.....+...++.+-+.++..-....|.+..-++.
T Consensus 349 len~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~ 428 (493)
T KOG0804|consen 349 LENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKE 428 (493)
T ss_pred HHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3444444444444455545555555555555555555555555555555555556666666665555555544444333
Q ss_pred --hhhhchHHHHHHHHHHHHH--HHHHHhh
Q 005601 163 --VDRENAEADLKAAVQKSQL--ETQEKLK 188 (688)
Q Consensus 163 --VDlEN~EakLqqALqeLR~--Qa~ee~k 188 (688)
...+-.-.+|++.|++|=. ++|.+||
T Consensus 429 ~~~s~d~~I~dLqEQlrDlmf~le~qqklk 458 (493)
T KOG0804|consen 429 ALGSKDEKITDLQEQLRDLMFFLEAQQKLK 458 (493)
T ss_pred HHHHHHHHHHHHHHHHHhHheehhhhhhhh
Confidence 3333345667777777643 3445554
No 283
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=87.21 E-value=35 Score=34.36 Aligned_cols=118 Identities=11% Similarity=0.128 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHhhhh
Q 005601 111 ISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRL 190 (688)
Q Consensus 111 ~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~EakLqqALqeLR~Qa~ee~kr~ 190 (688)
-+++.+..+......+..+++..+.++-.+..+...+.++..+-.-+=..=+.||-. .||.+ +. .
T Consensus 32 ~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr------~Al~~-k~--------~ 96 (219)
T TIGR02977 32 IIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLAR------AALIE-KQ--------K 96 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH------HHHHH-HH--------H
Confidence 444445556666666666666666666666666666555554432222111122211 23331 11 1
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHH
Q 005601 191 SDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQ 246 (688)
Q Consensus 191 ~Daq~r~nReE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~q 246 (688)
|..++..+..+ +..++..+.+++.+|..|..+|...+.+-..|-.|.+--..+
T Consensus 97 ~~~~~~~l~~~---~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~ 149 (219)
T TIGR02977 97 AQELAEALERE---LAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSR 149 (219)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433333 222344444555555666666666666655555555555544
No 284
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=87.17 E-value=20 Score=42.25 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=11.6
Q ss_pred CCcchhhhhhhhhhhhHHHHHhh
Q 005601 30 GPLSLDDFRSLQRSNTELRKQLE 52 (688)
Q Consensus 30 gpislDRVR~LE~ENsrLr~QIe 52 (688)
+|-.+-.|-.|-.+|..+.....
T Consensus 137 ~~s~~~~~~~~~~~~~~~~~~~~ 159 (670)
T KOG0239|consen 137 NPSIFVSLLELAQENRGLYLDLS 159 (670)
T ss_pred cccHHHHHHHHHhhhcccccccc
Confidence 34444455555555555554444
No 285
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=87.14 E-value=50 Score=36.05 Aligned_cols=213 Identities=16% Similarity=0.172 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHh---h
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERN---L 160 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~Rk---q 160 (688)
-++|..+++-++.+.+..++.|.--+..++.- +- .....+..|+++...|...|+..+- .
T Consensus 26 E~ky~ediei~Kekn~~Lqk~lKLneE~ltkT---i~--------------qy~~QLn~L~aENt~L~SkLe~EKq~ker 88 (305)
T PF14915_consen 26 EKKYLEDIEILKEKNDDLQKSLKLNEETLTKT---IF--------------QYNGQLNVLKAENTMLNSKLEKEKQNKER 88 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---HH--------------HHhhhHHHHHHHHHHHhHHHHHhHHHHHH
Confidence 36788888888888888888776433222111 11 1112344444445555555544333 3
Q ss_pred hhhhhhchHHHHHHHHHHHH-HHHHHHhhhhhHHHHHHhHHH-HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHH
Q 005601 161 RRVDRENAEADLKAAVQKSQ-LETQEKLKRLSDAASRRELEQ-QEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDN 238 (688)
Q Consensus 161 LEVDlEN~EakLqqALqeLR-~Qa~ee~kr~~Daq~r~nReE-~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~ 238 (688)
|+.++|--.++|++||++.= .| --||--+-...+-|++ --.-.++-=.+-.++-..+.|..||+..+.+.+.|+.
T Consensus 89 LEtEiES~rsRLaaAi~d~dqsq---~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~ 165 (305)
T PF14915_consen 89 LETEIESYRSRLAAAIQDHDQSQ---TSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEI 165 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHH---hhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34666666778888887753 23 1233333334444443 1111122223334455567777777777766666666
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhhHHHHHHhhHhHhhHH
Q 005601 239 KVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARERIM 318 (688)
Q Consensus 239 RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYrKLLEgEE~RLkgareri~ 318 (688)
.....=..|..--. .++-..+++.+.+-.|.-...-||.-=+++ +.|.-==+.=|.||-...--=|
T Consensus 166 elh~trdaLrEKtL-------~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv-------~k~~~Kqes~eERL~QlqsEN~ 231 (305)
T PF14915_consen 166 ELHHTRDALREKTL-------ALESVQRDLSQTQCQIKEIEHMYQNEQDKV-------NKYIGKQESLEERLSQLQSENM 231 (305)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 55554444433222 344555566655555555555555544443 3344433444577777665556
Q ss_pred HhhhhhhHhhcc
Q 005601 319 LRETQLRAFYST 330 (688)
Q Consensus 319 lretqlrafyst 330 (688)
|=.-||-..|.-
T Consensus 232 LLrQQLddA~~K 243 (305)
T PF14915_consen 232 LLRQQLDDAHNK 243 (305)
T ss_pred HHHHHHHHHHHH
Confidence 666688777754
No 286
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=87.09 E-value=5.9 Score=44.98 Aligned_cols=77 Identities=14% Similarity=0.194 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHhHHHHHHHHhhHHHHHhhh
Q 005601 85 ISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQS-CTEANEIMKSQKVTIDELKTQLDEERNLR 161 (688)
Q Consensus 85 kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sd-rk~aeeelkelkaei~eLe~qLee~RkqL 161 (688)
..+..++++++.++.+..++=....+....+..+-..++.+++++++. +..+..+...++.++.+|..+|..+..+|
T Consensus 62 rTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 62 RTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455554444444444444445555556666777777643 44555555555555555544444444433
No 287
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=86.85 E-value=65 Score=37.05 Aligned_cols=189 Identities=17% Similarity=0.166 Sum_probs=110.2
Q ss_pred hhhhhccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhH
Q 005601 55 VLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAE-ISRISAEQKHEMEDLNDRLSASMQSC 133 (688)
Q Consensus 55 eeti~tltrEvs~IK~~YEsEL~DARklL~kk~~~EleELk~~L~kKeKEL~~-ae~~~~~~Es~indLearLsaa~sdr 133 (688)
+..|=+|+-|.+. +| ++-+.++.|+..||+.=++--+.....|.. ..+-++.+| +..+|+.+++..++..
T Consensus 290 ES~WIsLteeLR~-------dl-e~~r~~aek~~~EL~~Ek~c~eEL~~al~~A~~GhaR~lE-qYadLqEk~~~Ll~~H 360 (488)
T PF06548_consen 290 ESKWISLTEELRV-------DL-ESSRSLAEKLEMELDSEKKCTEELDDALQRAMEGHARMLE-QYADLQEKHNDLLARH 360 (488)
T ss_pred HhhhhhhHHHHHH-------HH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4555455555442 22 233455666666666555544444444433 344555555 5789999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHH
Q 005601 134 TEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEK 213 (688)
Q Consensus 134 k~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaqEElk 213 (688)
+...+-|.+.|+--++.-.-=...|+ .+.|++-|--||.+ -+--.+.
T Consensus 361 r~i~egI~dVKkaAakAg~kG~~~rF---------~~slaaEiSalr~e--------rEkEr~~---------------- 407 (488)
T PF06548_consen 361 RRIMEGIEDVKKAAAKAGVKGAESRF---------INSLAAEISALRAE--------REKERRF---------------- 407 (488)
T ss_pred HHHHHHHHHHHHHHHHhccccchHHH---------HHHHHHHHHHHHHH--------HHHHHHH----------------
Confidence 99999999888755554322233333 56677777778887 2222222
Q ss_pred HHhHHHHHHHHhHHHHHHHh---hhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 214 QSSLQVESLKLKLDETRERL---VTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVS 290 (688)
Q Consensus 214 e~R~RVEsL~sKL~dLe~~n---~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKv 290 (688)
++-...+|..||-|+=..+ --|-.|+|+-|......+.++ ...++|-.++.++|+.-+.-|
T Consensus 408 -l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~-------~~~eqe~ek~~kqiekLK~kh-------- 471 (488)
T PF06548_consen 408 -LKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERA-------MDAEQENEKAKKQIEKLKRKH-------- 471 (488)
T ss_pred -HHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------
Confidence 2233345666676665553 335678888777766666666 344555555555555544333
Q ss_pred hhhHhHHHHHhhh
Q 005601 291 GLELDILAATRDL 303 (688)
Q Consensus 291 aLDlEIaAYrKLL 303 (688)
++||.+....|
T Consensus 472 --~~Ei~t~kq~l 482 (488)
T PF06548_consen 472 --KMEISTMKQYL 482 (488)
T ss_pred --HHHHHHHHHHH
Confidence 45565554443
No 288
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=86.82 E-value=13 Score=39.58 Aligned_cols=86 Identities=15% Similarity=0.224 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhchHHHHHHHHHHHH
Q 005601 101 KQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQ 180 (688)
Q Consensus 101 KeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~EakLqqALqeLR 180 (688)
..-++..+++.++ ..+..+..++.+....+..+..+-+.|...|.+.+..|+..+|.|. +||.+|
T Consensus 156 r~~e~~~iE~~l~---~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~------------sLq~vR 220 (267)
T PF10234_consen 156 RPLELNEIEKALK---EAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQ------------SLQSVR 220 (267)
T ss_pred CCcCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHhcC
Confidence 3444444444332 3333444444444444444444444444444444444444444443 222222
Q ss_pred -------HHHHHHhhhhhHHHHHHhHHH
Q 005601 181 -------LETQEKLKRLSDAASRRELEQ 201 (688)
Q Consensus 181 -------~Qa~ee~kr~~Daq~r~nReE 201 (688)
+...+||+.+|+.++..+|..
T Consensus 221 PAfmdEyEklE~EL~~lY~~Y~~kfRNl 248 (267)
T PF10234_consen 221 PAFMDEYEKLEEELQKLYEIYVEKFRNL 248 (267)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 234456777799999988864
No 289
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=86.76 E-value=18 Score=39.34 Aligned_cols=98 Identities=17% Similarity=0.143 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 202 QEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAA 281 (688)
Q Consensus 202 ~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~E 281 (688)
...+..++|..+.+..-|+.|+.+|.+++.-+-.|-.++..+.......-..+. -..-+.+=.+|.+++..+++---+
T Consensus 71 a~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~--~~ere~lV~qLEk~~~q~~qLe~d 148 (319)
T PF09789_consen 71 AQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHF--PHEREDLVEQLEKLREQIEQLERD 148 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhcccccccc--chHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666666666666665555555554333322211111 122233334445556666655566
Q ss_pred HHHHHHHHHhhhHhHHHHHh
Q 005601 282 REVAWAKVSGLELDILAATR 301 (688)
Q Consensus 282 YQdLmDiKvaLDlEIaAYrK 301 (688)
|+-++|-|--|-.|=.||+-
T Consensus 149 ~qs~lDEkeEl~~ERD~yk~ 168 (319)
T PF09789_consen 149 LQSLLDEKEELVTERDAYKC 168 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666667777763
No 290
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=86.52 E-value=10 Score=40.01 Aligned_cols=76 Identities=22% Similarity=0.254 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhh
Q 005601 86 SYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLR 161 (688)
Q Consensus 86 k~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqL 161 (688)
-++.-+++++-+|+..+++-..+-.....+++.+++++.||....-....|++.++.+-.+...|++-++++--.+
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~ 207 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGV 207 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccc
Confidence 4556778888888888888888888888888888888888888888777888877777777777777776654433
No 291
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=86.40 E-value=91 Score=38.27 Aligned_cols=37 Identities=27% Similarity=0.276 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhhHhHHHHHhhhHHHHHHhhHhHhhH
Q 005601 281 AREVAWAKVSGLELDILAATRDLDFERRRLKAARERI 317 (688)
Q Consensus 281 EYQdLmDiKvaLDlEIaAYrKLLEgEE~RLkgareri 317 (688)
++..|-..|.+||-+|.-...-=-.|..||++--||+
T Consensus 645 ~rD~l~~~r~~ld~qI~RLsqP~GseD~RL~~LAerf 681 (1480)
T COG3096 645 ERDELGARKNALDEEIERLSQPGGSEDQRLNALAERF 681 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHh
Confidence 3445556788899999877776678899999988885
No 292
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=86.35 E-value=11 Score=44.16 Aligned_cols=95 Identities=18% Similarity=0.290 Sum_probs=58.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHh
Q 005601 67 VVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEME---DLNDRLSASMQSCTEANEIMKSQ 143 (688)
Q Consensus 67 ~IK~~YEsEL~DARklL~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~in---dLearLsaa~sdrk~aeeelkel 143 (688)
..-..|+++|...++.+ .+|..|+.+|+..+..+++++..++..+..+.-.+. ..+-++.+-......|+-.+.+.
T Consensus 415 ~ei~~~~~~i~~~~~~v-e~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~ 493 (652)
T COG2433 415 REITVYEKRIKKLEETV-ERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEK 493 (652)
T ss_pred cchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33456788888877765 555555555555555555555444444443333332 12334555556667788888888
Q ss_pred HHHHHHHHhhHHHHHhhhh
Q 005601 144 KVTIDELKTQLDEERNLRR 162 (688)
Q Consensus 144 kaei~eLe~qLee~RkqLE 162 (688)
+..+++|+.-|..+|+...
T Consensus 494 ~~~ve~L~~~l~~l~k~~~ 512 (652)
T COG2433 494 KKRVEELERKLAELRKMRK 512 (652)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8888888888888884433
No 293
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=86.10 E-value=51 Score=35.84 Aligned_cols=49 Identities=10% Similarity=0.125 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 236 SDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVS 290 (688)
Q Consensus 236 le~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKv 290 (688)
...++++|..++...+..+ ...+.+++..+++.++.+|++.++-++..-
T Consensus 95 ~~~q~~~l~~~~~~~~~~s------~~~y~~~~~~l~~~l~~~l~~~~~~y~~~d 143 (332)
T TIGR01541 95 FRKQQRDLNKAMTAKGLAG------SDLYKEQLAAIKAALNEALAELHAYYAAED 143 (332)
T ss_pred HHHHHHHHHHhhhhccccC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666665433333 345566666777677666666655554433
No 294
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=86.05 E-value=22 Score=35.54 Aligned_cols=89 Identities=19% Similarity=0.190 Sum_probs=0.0
Q ss_pred hHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHH
Q 005601 65 NRVVVERHEKEMK-EMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQS-CTEANEIMKS 142 (688)
Q Consensus 65 vs~IK~~YEsEL~-DARklL~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sd-rk~aeeelke 142 (688)
+..++.+|++-+. -+|+.|..... ..+|...+...+++....+.....++..+..++.+....++. .+...+++.-
T Consensus 97 l~~y~~l~~s~~~f~~rk~l~~e~~--~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~ 174 (189)
T PF10211_consen 97 LDAYQTLYESSIAFGMRKALQAEQG--KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDF 174 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHhhHH
Q 005601 143 QKVTIDELKTQLD 155 (688)
Q Consensus 143 lkaei~eLe~qLe 155 (688)
++.....|+.+|+
T Consensus 175 lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 175 LKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHh
No 295
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=86.04 E-value=34 Score=37.80 Aligned_cols=146 Identities=16% Similarity=0.213 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHH
Q 005601 106 AEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQE 185 (688)
Q Consensus 106 ~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~EakLqqALqeLR~Qa~e 185 (688)
..++..+.+-|..+|.|+.| +..-..+=|+++++..++.+.+...+|-+-|. +.-+=++..|
T Consensus 156 ~Iaqailkqse~lIN~Ls~r--Ar~dt~r~Ae~eV~~~eerv~kAs~~L~~yr~-------------kngvfdp~~q--- 217 (372)
T COG3524 156 KIAQAILKQSEKLINQLSER--ARRDTVRFAEEEVQKAEERVKKASNDLTDYRI-------------KNGVFDPKAQ--- 217 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-------------hcCccChhhh---
Confidence 35666777888888888765 34444566677776666554444444433332 2222222333
Q ss_pred HhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhh-hHHHH-HHHH
Q 005601 186 KLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVS-ASWKK-RVEE 263 (688)
Q Consensus 186 e~kr~~Daq~r~nReE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s-~~~~k-~l~~ 263 (688)
.+-||. -+++++-|+.....+++++.+..++--=+...|.+||.-|+.||..|+.+- +++.. .+..
T Consensus 218 -----aevq~~-------Lvs~Le~eL~~iqaqL~tvks~m~~~nPqi~~LkarieSlrkql~qe~q~isag~~~~sl~~ 285 (372)
T COG3524 218 -----AEVQMS-------LVSKLEDELIVIQAQLDTVKSVMNPENPQIPGLKARIESLRKQLLQEKQAISAGGSSQSLSN 285 (372)
T ss_pred -----hHHHHH-------HHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCCCccchhH
Confidence 444443 477888888888888999988888888888999999999999998887654 22221 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005601 264 LENEIKKLREELESEKAARE 283 (688)
Q Consensus 264 lE~Ei~rLR~EMe~QL~EYQ 283 (688)
.-.|-.+| .+++++++.+
T Consensus 286 qaAefq~l--~lE~~fAeka 303 (372)
T COG3524 286 QAAEFQRL--YLENTFAEKA 303 (372)
T ss_pred HHHHHHHH--HHHHHHHHHH
Confidence 33333333 3445555444
No 296
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=86.00 E-value=46 Score=34.53 Aligned_cols=97 Identities=12% Similarity=0.200 Sum_probs=69.6
Q ss_pred hccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005601 59 DKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANE 138 (688)
Q Consensus 59 ~tltrEvs~IK~~YEsEL~DARklL~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aee 138 (688)
.+|.|.+..++ -+|..+..- ++.+...|+++-+.-+.+.....+.+.+....+..++.+++.|.-|..--..+.-
T Consensus 7 a~lnrri~~le----eele~aqEr-l~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adr 81 (205)
T KOG1003|consen 7 AALNRRIQLLE----EELDRAQER-LATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADR 81 (205)
T ss_pred HHHHHHHHHHH----HHHHHHHHH-HHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466665554 355555554 3677888999999999999999999999999999999999999888766655555
Q ss_pred HHHHhHHHHHHHHhhHHHHHhh
Q 005601 139 IMKSQKVTIDELKTQLDEERNL 160 (688)
Q Consensus 139 elkelkaei~eLe~qLee~Rkq 160 (688)
...+....+.=.+.+|+.+-..
T Consensus 82 K~eEVarkL~iiE~dLE~~eer 103 (205)
T KOG1003|consen 82 KYEEVARKLVIIEGELERAEER 103 (205)
T ss_pred HHHHHHHHHHHHHhHHHHHHHH
Confidence 5555555555566666554433
No 297
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=85.65 E-value=57 Score=35.23 Aligned_cols=35 Identities=29% Similarity=0.319 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHh
Q 005601 267 EIKKLREELESEKAAREVAWAKVSGLELDILAATR 301 (688)
Q Consensus 267 Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYrK 301 (688)
++..++++++.-...-++.=+.|..|--+|++..+
T Consensus 226 ~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 226 KLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344443344444555555666666666655
No 298
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=85.62 E-value=54 Score=36.59 Aligned_cols=33 Identities=24% Similarity=0.181 Sum_probs=14.7
Q ss_pred HHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHH
Q 005601 126 LSASMQSCTEANEIMKSQKVTIDELKTQLDEER 158 (688)
Q Consensus 126 Lsaa~sdrk~aeeelkelkaei~eLe~qLee~R 158 (688)
|..-..+..+-.-+.+.|+.+..+|..||--.|
T Consensus 87 lr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~ 119 (401)
T PF06785_consen 87 LRKIRESVEERQQESEQLQSQNQKLKNQLFHVR 119 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 333333333333444455555555555554443
No 299
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=85.59 E-value=32 Score=37.79 Aligned_cols=96 Identities=14% Similarity=0.173 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhh
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRV 163 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEV 163 (688)
++|+..++..-..++.+++|.|+ .+...+-..+..+..+|+.+....+.+..-+.++-.+++++-.+|+..+.+++.
T Consensus 243 L~kl~~~i~~~lekI~sREk~iN---~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 243 LDKLQQDISKTLEKIESREKYIN---NQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443 233333333444444444444444455555555555555555555444444431
Q ss_pred ---hhhch--HHHHHHHHHHHHHH
Q 005601 164 ---DRENA--EADLKAAVQKSQLE 182 (688)
Q Consensus 164 ---DlEN~--EakLqqALqeLR~Q 182 (688)
-+-+. =-+.++||.+|+.+
T Consensus 320 rg~~mtD~sPlv~IKqAl~kLk~E 343 (359)
T PF10498_consen 320 RGSSMTDGSPLVKIKQALTKLKQE 343 (359)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHHH
Confidence 11111 33555666655555
No 300
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=85.59 E-value=44 Score=33.89 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhh
Q 005601 113 AEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNL 160 (688)
Q Consensus 113 ~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~Rkq 160 (688)
.+++.++....+.|...-.....+++.+..+......+..++.+++..
T Consensus 81 ~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~ 128 (240)
T PF12795_consen 81 EELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQR 128 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444333333333333333
No 301
>PRK00846 hypothetical protein; Provisional
Probab=85.28 E-value=5.3 Score=35.49 Aligned_cols=52 Identities=17% Similarity=0.099 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh
Q 005601 111 ISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR 162 (688)
Q Consensus 111 ~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE 162 (688)
+-..++.+|.+|+.+++-.-.-...|++.+..+...|++|+.+|.-++.+|+
T Consensus 7 ~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~ 58 (77)
T PRK00846 7 RDQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 58 (77)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999999999999999999998888876
No 302
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=85.25 E-value=1.5e+02 Score=39.65 Aligned_cols=218 Identities=15% Similarity=0.174 Sum_probs=126.9
Q ss_pred HHHHhhHH--HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH--H---HHHHHHHHHHHHHHHHHHHHHhH
Q 005601 67 VVVERHEK--EMKEMKESV------SISYLHQLKVLRDMLDAKQKELAEIS--R---ISAEQKHEMEDLNDRLSASMQSC 133 (688)
Q Consensus 67 ~IK~~YEs--EL~DARklL------~kk~~~EleELk~~L~kKeKEL~~ae--~---~~~~~Es~indLearLsaa~sdr 133 (688)
.|...|+. +|+++|+-. +=+|..|-+.+..=+++|++=|.... . -+.-.+++|.-|+..+++.....
T Consensus 821 ~i~q~Y~El~~lA~lRrq~L~dalaLy~~~se~d~~ElWi~Eke~~L~~m~~~~~~E~vev~q~rFe~l~~eM~~~~~~v 900 (2473)
T KOG0517|consen 821 TISQDYEELQELAQLRRQRLEDALALYGFYSECDACELWIKEKEKWLATMSPPDSLEDVEVMQHRFEKLEQEMNTLAGRV 900 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHhhhhhH
Confidence 36667764 888988877 66778888888888888888887542 2 23445677888888777777666
Q ss_pred HHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHH-HHHHH------
Q 005601 134 TEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQ-QEVIN------ 206 (688)
Q Consensus 134 k~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE-~~~a~------ 206 (688)
...++....+.. ..+.-.++- .-+.+.-+..=+.|++|..|-...|..-+. +..+.-+ ..+..
T Consensus 901 ~~Vn~~a~qL~~------~ghp~sd~I--~~~Q~~Ln~rW~~l~~l~~qk~~~L~~a~~--V~~f~~eC~et~~wi~dK~ 970 (2473)
T KOG0517|consen 901 AEVNDIARQLLE------VGHPNSDEI--LARQDKLNQRWQQLRELVDQKKVALESALR--VETFHLECEETRVWIRDKT 970 (2473)
T ss_pred HHHHHHHHHHHH------cCCCChHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhHHHHHHHHHHH
Confidence 555555444431 111111100 111111222233444444442222221110 0011111 11111
Q ss_pred HHHHHHHHHhH---HHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 207 KLQIAEKQSSL---QVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAARE 283 (688)
Q Consensus 207 kaqEElke~R~---RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQ 283 (688)
+..|+....-+ -|-.|.-+|..++..+.++++|+-.|+.--..-...|.--...+...-.+|..|=+.|++.+++..
T Consensus 971 ~~~e~t~~~~~Dl~gv~alqrrL~~lErdl~aie~kv~~L~~ea~~v~~~~Paea~~i~~r~~el~~~w~~l~~~~~~~~ 1050 (2473)
T KOG0517|consen 971 RVLESTDRLGNDLAGVMALQRRLQGLERDLAAIEAKVAALEKEANKVEEEHPAEAQAINARIAELQALWEQLQQRLQERE 1050 (2473)
T ss_pred HHHHhccccCcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111111 133678899999999999999999999998888888855566666666677777778888888888
Q ss_pred HHHHHHHhhhH
Q 005601 284 VAWAKVSGLEL 294 (688)
Q Consensus 284 dLmDiKvaLDl 294 (688)
.+++--..|-+
T Consensus 1051 ~~l~ea~~lQ~ 1061 (2473)
T KOG0517|consen 1051 ERLEEAGGLQR 1061 (2473)
T ss_pred HHHHHHHHHHH
Confidence 77776665543
No 303
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=85.23 E-value=16 Score=35.39 Aligned_cols=85 Identities=15% Similarity=0.147 Sum_probs=57.8
Q ss_pred HhhhhhHHHHHHhHHHHHHHHHHHHHHHHH---------------hHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHH
Q 005601 186 KLKRLSDAASRRELEQQEVINKLQIAEKQS---------------SLQVESLKLKLDETRERLVTSDNKVRLLETQVCKE 250 (688)
Q Consensus 186 e~kr~~Daq~r~nReE~~~a~kaqEElke~---------------R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~E 250 (688)
|.|..|+.|+..|.+-...+.-+++.+..+ +|-++.|+.=|-.|+..-..|++.++++|=-|+.|
T Consensus 5 EWktRYEtQ~E~N~QLekqi~~l~~kiek~r~n~~drl~siR~ye~Ms~~~l~~llkqLEkeK~~Le~qlk~~e~rLeQE 84 (129)
T PF15372_consen 5 EWKTRYETQLELNDQLEKQIIILREKIEKIRGNPSDRLSSIRRYEQMSVESLNQLLKQLEKEKRSLENQLKDYEWRLEQE 84 (129)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777777666666666555554 34567777777788888888888888888888877
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHH
Q 005601 251 QNVSASWKKRVEELENEIKKLRE 273 (688)
Q Consensus 251 r~~s~~~~k~l~~lE~Ei~rLR~ 273 (688)
=-++ .+--+++-.-|++|..
T Consensus 85 sKAy---hk~ndeRr~ylaEi~~ 104 (129)
T PF15372_consen 85 SKAY---HKANDERRQYLAEISQ 104 (129)
T ss_pred HHHH---HHHhHHHHHHHHHHHh
Confidence 7777 5555555555555443
No 304
>PF13166 AAA_13: AAA domain
Probab=84.97 E-value=79 Score=36.27 Aligned_cols=37 Identities=24% Similarity=0.383 Sum_probs=19.0
Q ss_pred HHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHH
Q 005601 212 EKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVC 248 (688)
Q Consensus 212 lke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~ 248 (688)
.+.+...+..+..++..+.......+++|.+|+.++.
T Consensus 419 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 455 (712)
T PF13166_consen 419 IKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLK 455 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444555555555555555555555555554
No 305
>PLN03188 kinesin-12 family protein; Provisional
Probab=84.91 E-value=1.3e+02 Score=38.61 Aligned_cols=56 Identities=14% Similarity=0.243 Sum_probs=36.5
Q ss_pred cchhhHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 61 LRNENRVVVERHEKEMKEMKESV-SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHE 118 (688)
Q Consensus 61 ltrEvs~IK~~YEsEL~DARklL-~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~ 118 (688)
|..|..-+|..||.-=.-+|.-+ +|++.+|++..+..++--++|+..+ .+.++.++
T Consensus 945 ~~~~~~~~~~~y~~~p~~~~~~~e~~~~~~e~~~~~~~~d~~ErEvll~--eI~dlr~q 1001 (1320)
T PLN03188 945 LMHEHKLLKEKYENHPEVLRTKIELKRVQDELEHYRNFYDMGEREVLLE--EIQDLRSQ 1001 (1320)
T ss_pred hhhhHHHHHHHhhcChhhhhhhHHHHHHHHHHHHHHhhccchhHHHHHH--HHHHHHHH
Confidence 34677777888887655566566 8899999998888776455554422 34444443
No 306
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=84.82 E-value=1.2e+02 Score=38.13 Aligned_cols=29 Identities=21% Similarity=0.294 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhHHHHHHHHhhHHHHHhhh
Q 005601 133 CTEANEIMKSQKVTIDELKTQLDEERNLR 161 (688)
Q Consensus 133 rk~aeeelkelkaei~eLe~qLee~RkqL 161 (688)
..++++++..++.+|-+|+..|.-+|...
T Consensus 260 ~~~~~d~~~~~~~~i~ele~~l~~l~~ek 288 (1200)
T KOG0964|consen 260 LDKVEDESEDLKCEIKELENKLTNLREEK 288 (1200)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44566667777777777776666666533
No 307
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=84.79 E-value=1.1e+02 Score=37.82 Aligned_cols=227 Identities=16% Similarity=0.184 Sum_probs=0.0
Q ss_pred CCCcchhhhhhhhhhh-hHHHHHhhhhhhhhhccchhhHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 005601 29 DGPLSLDDFRSLQRSN-TELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESV-SISYLHQLKVLRDMLDAKQKELA 106 (688)
Q Consensus 29 ~gpislDRVR~LE~EN-srLr~QIe~~eeti~tltrEvs~IK~~YEsEL~DARklL-~kk~~~EleELk~~L~kKeKEL~ 106 (688)
+-|||+++.|.|-.|| .+|.+. ..|.-.+..-+=.+++|---.= .+.|--++-.++..++.|.|++.
T Consensus 951 n~eis~Ed~kkLhaE~daeLe~~-----------~ael~eleqk~le~~eDea~aRh~kefE~~mrdhrselEe~kKe~e 1019 (1424)
T KOG4572|consen 951 NDEISEEDKKKLHAEIDAELEKE-----------FAELIELEQKALECKEDEAFARHEKEFEIEMRDHRSELEEKKKELE 1019 (1424)
T ss_pred cCcccHHHHHHhhHHHHHHHHHH-----------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh--------hhhhchHH
Q 005601 107 EISRISAEQKHEM--------EDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR--------VDRENAEA 170 (688)
Q Consensus 107 ~ae~~~~~~Es~i--------ndLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE--------VDlEN~Ea 170 (688)
+..+.+.++++.| -+++=+....-.-+.+++++++-.++++++.+..+.+-|.+.. -+++|-..
T Consensus 1020 aiineiee~eaeIiQekE~el~e~efka~d~Sd~r~kie~efAa~eaemdeik~~~~edrakqkei~k~L~ehelenLrn 1099 (1424)
T KOG4572|consen 1020 AIINEIEELEAEIIQEKEGELIEDEFKALDESDPRAKIEDEFAAIEAEMDEIKDGKCEDRAKQKEIDKILKEHELENLRN 1099 (1424)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHhhhccccCcchhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHhHHH--------HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHH----
Q 005601 171 DLKAAVQKSQLETQEKLKRLSDAASRRELEQ--------QEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDN---- 238 (688)
Q Consensus 171 kLqqALqeLR~Qa~ee~kr~~Daq~r~nReE--------~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~---- 238 (688)
...+-=+.++.+ .+..---.-++ .+.|+.+--+..+-.--.+.--.|+..+-...--.+.
T Consensus 1100 EieklndkIkdn--------ne~~QVglae~nslmTiekDmcaselfneheeeS~ifdaa~nKiakiHe~AfEieknlke 1171 (1424)
T KOG4572|consen 1100 EIEKLNDKIKDN--------NEGDQVGLAEENSLMTIEKDMCASELFNEHEEESGIFDAAGNKIAKIHEIAFEIEKNLKE 1171 (1424)
T ss_pred HHHHHHHHhhcC--------CCcchHHHHHhccCCccchhHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -----------HHHHHHHHHHHH----HhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005601 239 -----------KVRLLETQVCKE----QNVSASWKKRVEELENEIKKLREELES 277 (688)
Q Consensus 239 -----------RIReLE~qL~~E----r~~s~~~~k~l~~lE~Ei~rLR~EMe~ 277 (688)
-+|.||++.+.+ -..+ ..-+++++.-+..+|+++++
T Consensus 1172 Qaielank~dpeLraiead~deeitQkdee~---eaiIa~ld~d~dh~~de~ek 1222 (1424)
T KOG4572|consen 1172 QAIELANKGDPELRAIEADIDEEITQKDEET---EAIIAMLDIDIDHDRDEIEK 1222 (1424)
T ss_pred HHHHHHhcCCchHHHHHhhhhHHHHhhhHHH---HHHHHHHHHHHHhhHHHHHH
No 308
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=84.40 E-value=9.5 Score=33.92 Aligned_cols=46 Identities=13% Similarity=0.214 Sum_probs=35.9
Q ss_pred HHHHHHhHHHHHHHHhhHHHHHhhhh------------hhhhchHHHHHHHHHHHHHH
Q 005601 137 NEIMKSQKVTIDELKTQLDEERNLRR------------VDRENAEADLKAAVQKSQLE 182 (688)
Q Consensus 137 eeelkelkaei~eLe~qLee~RkqLE------------VDlEN~EakLqqALqeLR~Q 182 (688)
......+..+++.|+.+++.+++.++ .+|..-|..|..||..+|+.
T Consensus 11 ~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~r 68 (100)
T PF01486_consen 11 DSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSR 68 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHH
Confidence 44566677777888888877777766 56666699999999999998
No 309
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.29 E-value=1.1e+02 Score=37.43 Aligned_cols=203 Identities=14% Similarity=0.099 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhh
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRV 163 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEV 163 (688)
+..++++.+-+....+-.-..+..-++....++-+++-|+.=..-. =+.=.+.++..+|++|++.|+.+..-- .
T Consensus 618 v~TL~~~~k~~~~~~~~~~~~i~~~q~e~~klqeq~~Al~~i~~~~-----fa~ID~~Sa~rqIael~~~lE~L~~t~-~ 691 (1104)
T COG4913 618 VETLRETVKAMLSREDFYMIKIMRQQGEYIKLQEQANALAHIQALN-----FASIDLPSAQRQIAELQARLERLTHTQ-S 691 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcc-----hhhcchhhHHHHHHHHHHHHHHhcCCh-h
Confidence 3445555555555544444444444444444444444333211111 111134455555666655555443221 1
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhHH-HHHHHHhHHHHHHHhhhhHHHHHH
Q 005601 164 DRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQ-VESLKLKLDETRERLVTSDNKVRL 242 (688)
Q Consensus 164 DlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaqEElke~R~R-VEsL~sKL~dLe~~n~ale~RIRe 242 (688)
+ -+-++++|..-+.+ |..+.|+|-++.-.--.-++....|....++.++- +....++|.-+=... ....-.++
T Consensus 692 ~----~~~~~~~l~aaQT~-~~vler~~~~~~~e~~~~k~~lkrA~~~~~k~~si~~~~~t~~~q~~~~a~-f~q~a~~~ 765 (1104)
T COG4913 692 D----IAIAKAALDAAQTR-QKVLERQYQQEVTECAGLKKDLKRAAMLSRKVHSIAKQGMTGALQALGAAH-FPQVAPEQ 765 (1104)
T ss_pred H----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhh-hhhhChHh
Confidence 1 23345555555555 45566666555543333344444444444444432 222223322221111 11111122
Q ss_pred HHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHhHHH
Q 005601 243 LETQVCKEQNVS-ASWKKRVEELENEIKKLREELESEKAAREVAWA-KVSGLELDILA 298 (688)
Q Consensus 243 LE~qL~~Er~~s-~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmD-iKvaLDlEIaA 298 (688)
+-..++.++-.+ ....++++.-+.+|++|++++---|.-|..-|- --+-++.|..+
T Consensus 766 h~~~vd~~~~~~r~~LqkrIDa~na~Lrrl~~~Iig~m~~~k~~~~a~~~e~~ael~~ 823 (1104)
T COG4913 766 HDDIVDIERIEHRRQLQKRIDAVNARLRRLREEIIGRMSDAKKEDTAALSEVGAELDD 823 (1104)
T ss_pred hhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhhccCHhH
Confidence 222222222111 122678888899999999999888887776553 23445555543
No 310
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=84.26 E-value=34 Score=37.61 Aligned_cols=154 Identities=15% Similarity=0.189 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhh
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRV 163 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEV 163 (688)
..-+.-|++..-++|.-.-+ +-..+=-..|.+..+-++.....+.+.+..+.+|...+...- .
T Consensus 193 ~~eWklEvERV~PqLKv~~~-------------~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~l----e 255 (359)
T PF10498_consen 193 PAEWKLEVERVLPQLKVTIR-------------ADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTL----E 255 (359)
T ss_pred HHHHHHHHHHHhhhheeecc-------------CCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----H
Confidence 56677777777777721100 001334445555666555555566666555555443332221 1
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHH
Q 005601 164 DRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLL 243 (688)
Q Consensus 164 DlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReL 243 (688)
.+.++|--|-+. ++..+..||.-+...+.+++..++....|..+...|+.+-.++......|.+
T Consensus 256 kI~sREk~iN~q---------------le~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee- 319 (359)
T PF10498_consen 256 KIESREKYINNQ---------------LEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE- 319 (359)
T ss_pred HHHHHHHHHHHH---------------hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 122223333333 5566666888888889999999999999999999888877766555554444
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005601 244 ETQVCKEQNVSASWKKRVEELENEIKKLREELES 277 (688)
Q Consensus 244 E~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~ 277 (688)
|-.+.+-..=|-...+-|++||.||.+
T Consensus 320 -------rg~~mtD~sPlv~IKqAl~kLk~EI~q 346 (359)
T PF10498_consen 320 -------RGSSMTDGSPLVKIKQALTKLKQEIKQ 346 (359)
T ss_pred -------hcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 222222234455666677788877765
No 311
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=84.03 E-value=2.8 Score=45.45 Aligned_cols=78 Identities=15% Similarity=0.281 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhh
Q 005601 85 ISYLHQLKVLRDMLDAKQKELAEISRIS----AEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNL 160 (688)
Q Consensus 85 kk~~~EleELk~~L~kKeKEL~~ae~~~----~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~Rkq 160 (688)
+-+..+++.+++.......++....... ..+.+++.+++.+++.+-.....+...++.+.+.+..|...|.++-+.
T Consensus 108 ~elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnr 187 (370)
T PF02994_consen 108 KELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENR 187 (370)
T ss_dssp ----------H-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3345555555544433333333333222 356788888888888888888888888888888888888888776554
Q ss_pred hh
Q 005601 161 RR 162 (688)
Q Consensus 161 LE 162 (688)
.+
T Consensus 188 sR 189 (370)
T PF02994_consen 188 SR 189 (370)
T ss_dssp HT
T ss_pred cc
Confidence 33
No 312
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=84.03 E-value=45 Score=32.66 Aligned_cols=31 Identities=10% Similarity=0.162 Sum_probs=19.3
Q ss_pred HHHHHhHHHHHHHHhhHHHHHhhhhhhhhch
Q 005601 138 EIMKSQKVTIDELKTQLDEERNLRRVDRENA 168 (688)
Q Consensus 138 eelkelkaei~eLe~qLee~RkqLEVDlEN~ 168 (688)
.+...++.+..+|+..++.++..|..++.+-
T Consensus 73 ~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l 103 (177)
T PF07798_consen 73 SEFAELRSENEKLQREIEKLRQELREEINKL 103 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777777666665544444
No 313
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=83.95 E-value=35 Score=37.09 Aligned_cols=51 Identities=16% Similarity=0.181 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhHHH----HHHHhhhhHHHHHHHHHHHHHHHhhh
Q 005601 204 VINKLQIAEKQSSLQVESLKLKLDE----TRERLVTSDNKVRLLETQVCKEQNVS 254 (688)
Q Consensus 204 ~a~kaqEElke~R~RVEsL~sKL~d----Le~~n~ale~RIReLE~qL~~Er~~s 254 (688)
+.-.|+-|+|+++--||+.++-|.+ .++=-+..+-+.+-||..|+..-..+
T Consensus 118 ALKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~KLEsLLqsMElAq 172 (305)
T PF15290_consen 118 ALKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKLESLLQSMELAQ 172 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHHHHHHHHHHH
Confidence 3445666677888888887777765 46666777788888888887665554
No 314
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=83.90 E-value=31 Score=39.12 Aligned_cols=50 Identities=14% Similarity=0.029 Sum_probs=28.0
Q ss_pred cccccccCCcccccccCCCccccCCCCCCC----CCCCCCCCcCCCCCccccccc
Q 005601 411 IRSQEEGQNTQEAEFTSGDRTCKGGFGSDI----DGVGTGPILEGDPIGTEQVHE 461 (688)
Q Consensus 411 ~r~~g~~~nTqe~E~tS~~~~~~~~f~sd~----~gv~tap~~e~~~~~te~v~e 461 (688)
....|..++-+-..|+++.+++- --+.|. --|+-.-.+..=..-|++|.+
T Consensus 213 ~tLaGs~g~it~~d~d~~~~~~i-Aas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ 266 (459)
T KOG0288|consen 213 STLAGSLGNITSIDFDSDNKHVI-AASNDKNLRLWNVDSLRLRHTLSGHTDKVTA 266 (459)
T ss_pred hhhhccCCCcceeeecCCCceEE-eecCCCceeeeeccchhhhhhhcccccceee
Confidence 34556677888899999999865 122211 114444444433445555543
No 315
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=83.82 E-value=44 Score=40.76 Aligned_cols=41 Identities=24% Similarity=0.259 Sum_probs=24.1
Q ss_pred hhhhhhhhhHHHHHhhhhhhhhhccchhhHHHHHhhHHHHH
Q 005601 37 FRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMK 77 (688)
Q Consensus 37 VR~LE~ENsrLr~QIe~~eeti~tltrEvs~IK~~YEsEL~ 77 (688)
+.++..+-..|...|.....|.+.|..|+..+...||.=++
T Consensus 870 ~~~~~~~id~lv~~IK~~~~tq~~~~~~~d~~~~~~e~~~~ 910 (1259)
T KOG0163|consen 870 ANSTYRQIDDLVKKIKMPRITQREMNSEYDVAVKNYEKLVK 910 (1259)
T ss_pred hhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666665556666666666655433
No 316
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=83.57 E-value=58 Score=33.59 Aligned_cols=101 Identities=19% Similarity=0.206 Sum_probs=51.7
Q ss_pred hchHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHhH---HHHH---HHHHHHHHHHHHhH----HHHHHHHhHHHHHHH
Q 005601 166 ENAEADLKAAVQKSQLETQEKLK---RLSDAASRREL---EQQE---VINKLQIAEKQSSL----QVESLKLKLDETRER 232 (688)
Q Consensus 166 EN~EakLqqALqeLR~Qa~ee~k---r~~Daq~r~nR---eE~~---~a~kaqEElke~R~----RVEsL~sKL~dLe~~ 232 (688)
+..++.++..-+.||.+.-.||| ++||..-+.+- .-+. .+.-++-.+..++. ++..-..++..+..+
T Consensus 36 ~~~e~~~~~KY~~lR~ElI~ELkqsKklydnYYkL~~KY~~LK~~~~~~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~ 115 (196)
T PF15272_consen 36 ELQETSYKEKYQQLRQELINELKQSKKLYDNYYKLYSKYQELKKSSKQSEDLQSRISNLEKQLVDQMIEKDREIRTLQDE 115 (196)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34478899999999999877774 57887766542 2211 11111111111111 111222233444555
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 005601 233 LVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIK 269 (688)
Q Consensus 233 n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~ 269 (688)
+..++-|..+|+.....++..+ ..+++.||..+.
T Consensus 116 l~~~~~r~~el~~~r~~e~~~Y---esRI~dLE~~L~ 149 (196)
T PF15272_consen 116 LLSLELRNKELQNERERERIAY---ESRIADLERQLN 149 (196)
T ss_pred HHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHH
Confidence 5555555555555555555555 555555555444
No 317
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.45 E-value=61 Score=33.82 Aligned_cols=92 Identities=14% Similarity=0.124 Sum_probs=63.7
Q ss_pred HHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhch--HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHH---HHH
Q 005601 130 MQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENA--EADLKAAVQKSQLETQEKLKRLSDAASRRELEQ---QEV 204 (688)
Q Consensus 130 ~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~--EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE---~~~ 204 (688)
.+.-.++++.|+.|-++|++++.|+...| ++- .+=-|.||+=|+. |+.||.|....+.+ -..
T Consensus 25 ~~r~dSve~KIskLDaeL~k~~~Qi~k~R-------~gpaq~~~KqrAlrVLkQ------KK~yE~q~d~L~~QsfNMeQ 91 (218)
T KOG1655|consen 25 NKRSDSVEKKISKLDAELCKYKDQIKKTR-------PGPAQNALKQRALRVLKQ------KKMYENQKDSLDQQSFNMEQ 91 (218)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHhcC-------CCcchhHHHHHHHHHHHH------HHHHHHHHHHHHHhcccHHH
Confidence 33344566777777777888777777663 332 3334567776664 58899999999999 567
Q ss_pred HHHHHHHHHHHhHHHHHHHHhHHHHHHHhh
Q 005601 205 INKLQIAEKQSSLQVESLKLKLDETRERLV 234 (688)
Q Consensus 205 a~kaqEElke~R~RVEsL~sKL~dLe~~n~ 234 (688)
++.+.+.++-+..-|..|..-...+.++.-
T Consensus 92 a~~t~e~LKdtq~Tv~AmK~~~k~mK~~yk 121 (218)
T KOG1655|consen 92 ANFTAESLKDTQATVAAMKDTNKEMKKQYK 121 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 778888888888777777766666555543
No 318
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=83.33 E-value=74 Score=37.43 Aligned_cols=30 Identities=17% Similarity=0.163 Sum_probs=20.1
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 005601 233 LVTSDNKVRLLETQVCKEQNVSASWKKRVE 262 (688)
Q Consensus 233 n~ale~RIReLE~qL~~Er~~s~~~~k~l~ 262 (688)
+...+...++|+++.+--+..|...-.+.+
T Consensus 365 ~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~ 394 (726)
T PRK09841 365 MPSTQQEVLRLSRDVEAGRAVYLQLLNRQQ 394 (726)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567788888888888888843333333
No 319
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=83.32 E-value=38 Score=34.57 Aligned_cols=115 Identities=20% Similarity=0.192 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 202 QEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAA 281 (688)
Q Consensus 202 ~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~E 281 (688)
++.+.+..++-..+..+++.|..+++.|+..|..++..+..++..+. .+..--.++...+.+|.-.+..
T Consensus 41 Q~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~-----------~L~~qi~~~~~~~~~l~p~m~~ 109 (251)
T PF11932_consen 41 QKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELA-----------SLEQQIEQIEETRQELVPLMEQ 109 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555544444444333322221 1122222334444444444444
Q ss_pred HHHHHHHHHhhhHhHHHHHhhhHHH-HHHhhHhHhhHHHhhhhhhHhhccHHHHHHHHH
Q 005601 282 REVAWAKVSGLELDILAATRDLDFE-RRRLKAARERIMLRETQLRAFYSTTEEISVLFA 339 (688)
Q Consensus 282 YQdLmDiKvaLDlEIaAYrKLLEgE-E~RLkgareri~lretqlrafystteeis~lfa 339 (688)
+-+-|.--+.+|+=+.. -| -.|| ++ ||..--++=.|+.|-+..+|.
T Consensus 110 m~~~L~~~v~~d~Pf~~------~eR~~Rl--~~----L~~~l~~~dv~~~ek~r~vle 156 (251)
T PF11932_consen 110 MIDELEQFVELDLPFLL------EERQERL--AR----LRAMLDDADVSLAEKFRRVLE 156 (251)
T ss_pred HHHHHHHHHhcCCCCCh------HHHHHHH--HH----HHHhhhccCCCHHHHHHHHHH
Confidence 44444444444442211 11 1233 22 344444555677777776654
No 320
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.27 E-value=1e+02 Score=36.34 Aligned_cols=28 Identities=25% Similarity=0.207 Sum_probs=18.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 252 NVSASWKKRVEELENEIKKLREELESEK 279 (688)
Q Consensus 252 ~~s~~~~k~l~~lE~Ei~rLR~EMe~QL 279 (688)
++-++.+.-+++++.-|+.||.+-.-+|
T Consensus 535 arl~stqqslaEke~HL~nLr~errk~L 562 (654)
T KOG4809|consen 535 ARLASTQQSLAEKEAHLANLRIERRKQL 562 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334456677777777877776655554
No 321
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=83.22 E-value=39 Score=35.20 Aligned_cols=40 Identities=20% Similarity=0.235 Sum_probs=19.5
Q ss_pred HHHHhHHHHHHHHhhHHHHHhhhh------hhhhchHHHHHHHHHH
Q 005601 139 IMKSQKVTIDELKTQLDEERNLRR------VDRENAEADLKAAVQK 178 (688)
Q Consensus 139 elkelkaei~eLe~qLee~RkqLE------VDlEN~EakLqqALqe 178 (688)
.+...++++...++.+...++... .+++++.+.+..+...
T Consensus 115 ~l~~ak~~l~~a~~~~~r~~~L~~~g~vs~~~~~~~~~~~~~a~~~ 160 (331)
T PRK03598 115 AVKQAQAAYDYAQNFYNRQQGLWKSRTISANDLENARSSRDQAQAT 160 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 344444444444555544444444 5555555555544443
No 322
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.15 E-value=33 Score=36.29 Aligned_cols=97 Identities=10% Similarity=0.089 Sum_probs=57.6
Q ss_pred hccchhhHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 005601 59 DKLRNENRVVVERHEKEMKEMKESV---SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTE 135 (688)
Q Consensus 59 ~tltrEvs~IK~~YEsEL~DARklL---~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~ 135 (688)
|.+-.++.+++..+.+=|.++|+.+ ...|...+-+-+..+.+..+.|.+.+.....+-..+.+.+++..-..++.+.
T Consensus 18 d~~~~~i~n~~s~~D~f~q~~r~~~~nS~~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~ 97 (246)
T KOG4657|consen 18 DICEKDIHNQRSKIDSFIQSPRRRSMNSLVEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKA 97 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346888999999999999998877 4555555555555555555556555555555555555555555555554444
Q ss_pred HHHHHHHhHHHHHHHHhhHH
Q 005601 136 ANEIMKSQKVTIDELKTQLD 155 (688)
Q Consensus 136 aeeelkelkaei~eLe~qLe 155 (688)
...++.-+.+.+..|+..++
T Consensus 98 ~q~elEvl~~n~Q~lkeE~d 117 (246)
T KOG4657|consen 98 TQSELEVLRRNLQLLKEEKD 117 (246)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44444444444444444443
No 323
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.10 E-value=64 Score=33.80 Aligned_cols=171 Identities=15% Similarity=0.174 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhchHHHHHHHHH
Q 005601 100 AKQKELAEISRISAEQKHEMEDLNDRLSAS--MQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQ 177 (688)
Q Consensus 100 kKeKEL~~ae~~~~~~Es~indLearLsaa--~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~EakLqqALq 177 (688)
|.+.++...-+++.+--..|++.=.++.+| .+.+.+++.+| |++|-+|. ..|.|+..=+-+.+-+=+.+|.
T Consensus 5 KLQ~Eid~~lKkv~EG~~~F~~i~~K~~~~~n~~QKEK~E~DL---KkEIKKLQ----R~RdQIK~W~~~~diKdk~~L~ 77 (233)
T PF04065_consen 5 KLQQEIDRTLKKVQEGVEEFDEIYEKVESATNQNQKEKLEADL---KKEIKKLQ----RLRDQIKTWLSSNDIKDKKKLL 77 (233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcchHHHHHHHH---HHHHHHHH----HHHHHHHHHccCcccccHHHHH
Confidence 456666666677777777777777777664 44566677654 45555543 3445555333333444456788
Q ss_pred HHHHHHHHHhhhhhHHHHHHhHHH---------------------------HHHHHHHHHHHHHHhHHHHHHHHhHHHHH
Q 005601 178 KSQLETQEKLKRLSDAASRRELEQ---------------------------QEVINKLQIAEKQSSLQVESLKLKLDETR 230 (688)
Q Consensus 178 eLR~Qa~ee~kr~~Daq~r~nReE---------------------------~~~a~kaqEElke~R~RVEsL~sKL~dLe 230 (688)
+.|.- -+.+|.+++.= ..+..-+..-+-+++.+|+.+.+.++.|.
T Consensus 78 e~Rk~--------IE~~MErFK~vEkesKtKafSkeGL~~~~k~dp~e~ek~e~~~wl~~~Id~L~~QiE~~E~E~E~L~ 149 (233)
T PF04065_consen 78 ENRKL--------IEEQMERFKVVEKESKTKAFSKEGLMAASKLDPKEKEKEEARDWLKDSIDELNRQIEQLEAEIESLS 149 (233)
T ss_pred HHHHH--------HHHHHHHHHHHHHHhcccccchhhhhcccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777 55566555543 33444444455555556666666665555
Q ss_pred HHh------hhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 005601 231 ERL------VTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDI 296 (688)
Q Consensus 231 ~~n------~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEI 296 (688)
... ..-..|+.+|+..+.. | .--+..||.=|+-|... .-..+.+++||-.|+.=|
T Consensus 150 ~~~kKkk~~~~~~~r~~~l~~~ier----h---k~Hi~kLE~lLR~L~N~----~l~~e~V~~ikedieyYv 210 (233)
T PF04065_consen 150 SQKKKKKKDSTKQERIEELESRIER----H---KFHIEKLELLLRLLDND----ELDPEQVEDIKEDIEYYV 210 (233)
T ss_pred HhhccCccCccchhHHHHHHHHHHH----H---HHHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHHH
Confidence 432 2456677777776643 2 22355566656555443 235577777777665433
No 324
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=82.98 E-value=5 Score=38.45 Aligned_cols=63 Identities=22% Similarity=0.336 Sum_probs=40.3
Q ss_pred HHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 005601 208 LQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREEL 275 (688)
Q Consensus 208 aqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EM 275 (688)
..+++..+...|..|+.+|..++..+..+...+..|.+++..+.... .+..++.++..|...+
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~-----~i~~l~~e~~~l~~kL 132 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELRE-----EIEELEEEIEELEEKL 132 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 35566666666777777777777777777777777777776665544 5555566655544433
No 325
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=82.97 E-value=29 Score=37.64 Aligned_cols=45 Identities=33% Similarity=0.524 Sum_probs=31.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 229 TRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKA 280 (688)
Q Consensus 229 Le~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~ 280 (688)
+.--+-.-+-.|.-||.||.. ..+.+..|+.+|.+++.+|+.--.
T Consensus 86 lshdlq~Ke~qv~~lEgQl~s-------~Kkqie~Leqelkr~KsELErsQ~ 130 (307)
T PF10481_consen 86 LSHDLQVKESQVNFLEGQLNS-------CKKQIEKLEQELKRCKSELERSQQ 130 (307)
T ss_pred hhHHHhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444556667777777753 366788999999999999985433
No 326
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=82.80 E-value=46 Score=31.85 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 99 DAKQKELAEISRISAEQKHEMEDLNDRLSASMQ 131 (688)
Q Consensus 99 ~kKeKEL~~ae~~~~~~Es~indLearLsaa~s 131 (688)
++-...+..|+....+.+....+.+.+|..+..
T Consensus 56 ~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ 88 (156)
T CHL00118 56 EYIRKNLTKASEILAKANELTKQYEQELSKARK 88 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555544
No 327
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=82.61 E-value=68 Score=33.72 Aligned_cols=202 Identities=17% Similarity=0.171 Sum_probs=115.3
Q ss_pred hhhHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhHHHHH
Q 005601 63 NENRVVVERHEKEMKEMKESV---SISYLHQLKVLRDMLDAKQKELAEISRISAEQKH--EMEDLNDRLSASMQSCTEAN 137 (688)
Q Consensus 63 rEvs~IK~~YEsEL~DARklL---~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es--~indLearLsaa~sdrk~ae 137 (688)
+..+.--+.+|.+|.++|... +..+...|..|.++|.+ .+++.+-=|+. ....+..+...|...-..|.
T Consensus 17 N~atd~IN~lE~~L~~ar~~fr~~l~e~~~kL~~~~kkLg~------~I~karPYyea~~~a~~aq~e~q~Aa~~yerA~ 90 (239)
T PF05276_consen 17 NQATDEINRLENELDEARATFRRLLSESTKKLNELAKKLGS------CIEKARPYYEARRKAKEAQQEAQKAALQYERAN 90 (239)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455588999999999876 55555666666666653 12333333333 34556666777777788888
Q ss_pred HHHHHhHHHHHHHHhhHHHHHh-hhhhhhhchHHHHHHHHHHHHHHHHH--HhhhhhHHHHHHhHHHHHHHHHHHHHHHH
Q 005601 138 EIMKSQKVTIDELKTQLDEERN-LRRVDRENAEADLKAAVQKSQLETQE--KLKRLSDAASRRELEQQEVINKLQIAEKQ 214 (688)
Q Consensus 138 eelkelkaei~eLe~qLee~Rk-qLEVDlEN~EakLqqALqeLR~Qa~e--e~kr~~Daq~r~nReE~~~a~kaqEElke 214 (688)
+.....|-.+..++..|..-.. .+. -.- ---|-+|..++.+=-++ +..+.|..-++.+..-...+..++..++.
T Consensus 91 ~~h~aAKe~v~laEq~l~~~~~~~~D--~~w-qEmLn~A~~kVneAE~ek~~ae~eH~~~~~~~~~ae~~v~~Lek~lkr 167 (239)
T PF05276_consen 91 SMHAAAKEMVALAEQSLMSDSNWTFD--PAW-QEMLNHATQKVNEAEQEKTRAEREHQRRARIYNEAEQRVQQLEKKLKR 167 (239)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccccc--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888777765332 222 111 12344444444332111 11223444444444433333333333222
Q ss_pred HhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 005601 215 SSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLRE 273 (688)
Q Consensus 215 ~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~ 273 (688)
.=..-.--=.-=......+.....+|..||.+|..-+..|..+.+.|+.+=.+|-+-|.
T Consensus 168 ~I~KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~ISeeIH~~R~ 226 (239)
T PF05276_consen 168 AIKKSRPYFELKAKFNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQISEEIHEQRR 226 (239)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11100000001122455566677899999999999999998888888888888877664
No 328
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=82.58 E-value=27 Score=37.80 Aligned_cols=115 Identities=13% Similarity=0.217 Sum_probs=75.4
Q ss_pred chhhhhhhhhhhhHHHHHhhhhhhhhhccchhhHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 33 SLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESV--SISYLHQLKVLRDMLDAKQKELAEISR 110 (688)
Q Consensus 33 slDRVR~LE~ENsrLr~QIe~~eeti~tltrEvs~IK~~YEsEL~DARklL--~kk~~~EleELk~~L~kKeKEL~~ae~ 110 (688)
-|-+|-.||..|.+|.++-.-.+--+|+|.--...-|.-.|.|..+.=-+= ..++.+..+.|.+.-.|..-+|.
T Consensus 16 aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq---- 91 (307)
T PF10481_consen 16 ALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQ---- 91 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHh----
Confidence 377889999999999988776666666665555555555555443321111 33444445555544444444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhH
Q 005601 111 ISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQL 154 (688)
Q Consensus 111 ~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qL 154 (688)
--+++++=|++.|+.++.....|+-+++.+|.++.+.....
T Consensus 92 ---~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~ 132 (307)
T PF10481_consen 92 ---VKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAA 132 (307)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45678888999999999988888888888887776554433
No 329
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=82.26 E-value=18 Score=40.50 Aligned_cols=41 Identities=15% Similarity=0.050 Sum_probs=32.8
Q ss_pred HHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHH
Q 005601 208 LQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVC 248 (688)
Q Consensus 208 aqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~ 248 (688)
..+++++++.+|..|..++..++.++.+++.++.-|+....
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 109 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIRE 109 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34567778888888888888888888888888888877753
No 330
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=82.19 E-value=62 Score=32.97 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005601 92 KVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEAN 137 (688)
Q Consensus 92 eELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~ae 137 (688)
..|+..+.+..+-|..|...-..+...+.....-|.........++
T Consensus 80 ~~l~~~l~~~~~~L~~A~~sD~~~~~~~~~~~~~l~~L~~~~~~L~ 125 (296)
T PF13949_consen 80 ASLRKELQKYREYLEQASESDSQLRSKLESIEENLELLSGPIEELE 125 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCChhhHH
Confidence 4666666666666666666666666666666555544444444433
No 331
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=81.99 E-value=1.2e+02 Score=36.24 Aligned_cols=105 Identities=14% Similarity=0.057 Sum_probs=65.3
Q ss_pred hhhhhhccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 005601 54 QVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSC 133 (688)
Q Consensus 54 ~eeti~tltrEvs~IK~~YEsEL~DARklL~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdr 133 (688)
.+..| .++-.-.+-..+-|.++-+.+..=|..-+++......+...++..+++.+..+=+++++..-....+.+.=
T Consensus 23 L~~IW----~~igE~~~e~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e 98 (660)
T KOG4302|consen 23 LQKIW----DEIGESETERDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIE 98 (660)
T ss_pred HHHHH----HHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccC
Confidence 34555 45555555556666777766655555555555555556667777777777777777777665555444444
Q ss_pred HHHHHHHHHhHHHHHHHHhhHHHHHhhhh
Q 005601 134 TEANEIMKSQKVTIDELKTQLDEERNLRR 162 (688)
Q Consensus 134 k~aeeelkelkaei~eLe~qLee~RkqLE 162 (688)
..|.+.+..++..+..|++|.++-+++..
T Consensus 99 ~tLke~l~~l~~~le~lr~qk~eR~~ef~ 127 (660)
T KOG4302|consen 99 GTLKEQLESLKPYLEGLRKQKDERRAEFK 127 (660)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666665554
No 332
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=81.69 E-value=36 Score=31.79 Aligned_cols=71 Identities=21% Similarity=0.208 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh
Q 005601 92 KVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR 162 (688)
Q Consensus 92 eELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE 162 (688)
++....+.....++...+-.+..+...+.--........+.....+..+...+.+|.+|+.+|..+|..+.
T Consensus 42 e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~ 112 (139)
T PF05615_consen 42 EESQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQ 112 (139)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777777777777766666677777777888888888888899999999988887665
No 333
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=81.66 E-value=1.2e+02 Score=36.11 Aligned_cols=35 Identities=29% Similarity=0.460 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 241 RLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAR 282 (688)
Q Consensus 241 ReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EY 282 (688)
++||.++-.||..| ...+. ..+.|||- |++.|+++
T Consensus 426 ~~~~e~~l~ernl~---~~qvg---~aL~rLrg-ie~aL~~~ 460 (657)
T KOG1854|consen 426 QKLEEAVLQERNLH---SSQVG---KALSRLRG-IEQALQER 460 (657)
T ss_pred HHHHHHHHHHhcch---HhHHH---HHHHHHHh-HHHHHHHH
Confidence 48999999999999 66666 56666664 55555543
No 334
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=81.51 E-value=85 Score=34.09 Aligned_cols=16 Identities=44% Similarity=0.625 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 005601 261 VEELENEIKKLREELE 276 (688)
Q Consensus 261 l~~lE~Ei~rLR~EMe 276 (688)
+..++.++...+.++.
T Consensus 229 ~~~~~~~l~~~~~~l~ 244 (421)
T TIGR03794 229 LETVEARIKEARYEIE 244 (421)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444445544444443
No 335
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=81.43 E-value=43 Score=30.69 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005601 268 IKKLREELESEKAAREVAW 286 (688)
Q Consensus 268 i~rLR~EMe~QL~EYQdLm 286 (688)
+..|+..+....++..+.+
T Consensus 179 ~~~l~~~~~~~~~~~~~~l 197 (202)
T PF01442_consen 179 IEELESSIDRISEDIEEAL 197 (202)
T ss_dssp HHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 336
>PRK10698 phage shock protein PspA; Provisional
Probab=81.33 E-value=68 Score=32.85 Aligned_cols=47 Identities=9% Similarity=0.097 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASM 130 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~ 130 (688)
+..+.+.+.+++..+..-...-..+++.+..++..+.+.+.+--.|+
T Consensus 33 i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al 79 (222)
T PRK10698 33 IQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELAL 79 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444443333
No 337
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=81.23 E-value=1.3e+02 Score=36.15 Aligned_cols=157 Identities=21% Similarity=0.236 Sum_probs=83.5
Q ss_pred HHHHHhHHHHHHHHhhHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhH
Q 005601 138 EIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSL 217 (688)
Q Consensus 138 eelkelkaei~eLe~qLee~RkqLEVDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaqEElke~R~ 217 (688)
+.+-.|...|-.|+.+++.-|.+|-. +|.-||+.|....+= | -.+- -+.-|+-++++
T Consensus 132 eqVeaQgEKIrDLE~cie~kr~kLna----tEEmLQqellsrtsL---------E----TqKl------DLmaevSeLKL 188 (861)
T KOG1899|consen 132 EQVEAQGEKIRDLETCIEEKRNKLNA----TEEMLQQELLSRTSL---------E----TQKL------DLMAEVSELKL 188 (861)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhhch----HHHHHHHHHHhhhhH---------H----HHHh------HHHHHHHHhHH
Confidence 44555566666677777777666641 144455544433111 0 0000 12234455556
Q ss_pred HHHHHHHhHHHHHHHhhhhHHHHHHHHHH----HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005601 218 QVESLKLKLDETRERLVTSDNKVRLLETQ----VCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLE 293 (688)
Q Consensus 218 RVEsL~sKL~dLe~~n~ale~RIReLE~q----L~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLD 293 (688)
+...|...-.+.+.++...++-+.++-.. |..||..| ..++-.-..||+.||++.+..-.|-.-|+-.-+
T Consensus 189 kltalEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erlqy---e~klkstk~e~a~L~Eq~~eK~~e~~rl~~~lv--- 262 (861)
T KOG1899|consen 189 KLTALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQY---ETKLKSTKGEMAPLREQRSEKNDEEMRLLRTLV--- 262 (861)
T ss_pred HHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HhhcccccchhhhHHHHHhhhhhHHHHHHHHHH---
Confidence 66666666666666666666666555533 56778888 666666677777777766554444333332211
Q ss_pred HhHHHHHhhhHHH-----HHHhhHhHhhHHHhhhhhhHhh
Q 005601 294 LDILAATRDLDFE-----RRRLKAARERIMLRETQLRAFY 328 (688)
Q Consensus 294 lEIaAYrKLLEgE-----E~RLkgareri~lretqlrafy 328 (688)
-+-.++|| -++|+-|-|-+|+--.|--.||
T Consensus 263 -----~~~~~d~e~~~~rd~~lk~a~eslm~ane~kdr~i 297 (861)
T KOG1899|consen 263 -----QRLMADGEHKSLRDNTLKNALESLMRANEQKDRFI 297 (861)
T ss_pred -----HHHhhcccchhhHHHHHHHHHHHHHhhchhhhhHH
Confidence 11122333 2377777766666555555555
No 338
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=81.08 E-value=26 Score=35.17 Aligned_cols=42 Identities=31% Similarity=0.328 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhhHHH
Q 005601 258 KKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFE 306 (688)
Q Consensus 258 ~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYrKLLEgE 306 (688)
.+++..|+.|+.+|.+++..-..+|+.|+.| |.-+|||...+
T Consensus 117 ~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~I-------m~RARkl~~~~ 158 (161)
T TIGR02894 117 QKRNEELEKELEKLRQRLSTIEEDYQTLIDI-------MDRARKLAVVE 158 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhc
Confidence 5667788888899999999889999999988 45566655444
No 339
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=81.05 E-value=74 Score=33.08 Aligned_cols=65 Identities=14% Similarity=0.237 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhH
Q 005601 90 QLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQL 154 (688)
Q Consensus 90 EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qL 154 (688)
+..+|..+|...+-+...++..+..++..+..|..++..+...+..|+.....+...+.+|+.+-
T Consensus 6 ~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~ 70 (246)
T PF00769_consen 6 EKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEA 70 (246)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777888888888888888888888888888888888877777777777776666654
No 340
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=80.82 E-value=2.6 Score=45.82 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHH
Q 005601 206 NKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLE 244 (688)
Q Consensus 206 ~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE 244 (688)
..++-.+.-+...|.-|.+-++.+--++..|++|+..||
T Consensus 115 S~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LE 153 (326)
T PF04582_consen 115 SDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALE 153 (326)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHh
Confidence 333333444444455555555555555555555555555
No 341
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=80.80 E-value=30 Score=34.96 Aligned_cols=29 Identities=21% Similarity=0.184 Sum_probs=13.4
Q ss_pred HHhHHHHHHHHHHhHHHHHHHHhhHHHHH
Q 005601 130 MQSCTEANEIMKSQKVTIDELKTQLDEER 158 (688)
Q Consensus 130 ~sdrk~aeeelkelkaei~eLe~qLee~R 158 (688)
-....++++.++.+...|-+|+.+...++
T Consensus 123 ~~~~~~~e~~i~~Le~ki~el~~~~~~~~ 151 (190)
T PF05266_consen 123 EAELKELESEIKELEMKILELQRQAAKLK 151 (190)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 342
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=80.75 E-value=43 Score=31.16 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=13.4
Q ss_pred HHHHHHHHhHHHHHHHHhhHHHHHhhh
Q 005601 135 EANEIMKSQKVTIDELKTQLDEERNLR 161 (688)
Q Consensus 135 ~aeeelkelkaei~eLe~qLee~RkqL 161 (688)
.+.+-+.-+++.+..|.+++....+++
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l 117 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEAL 117 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555444443
No 343
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=80.38 E-value=51 Score=37.56 Aligned_cols=128 Identities=21% Similarity=0.186 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhchHHHHHHHHH
Q 005601 98 LDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQ 177 (688)
Q Consensus 98 L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~EakLqqALq 177 (688)
+++..+++..+...+.-|+..++.|++.=-.- +-..+--+++.++.+-.+|-.|| .+++..+..|.-.|.
T Consensus 145 ~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~--~~~~~~~e~~~l~~eE~~L~q~l--------k~le~~~~~l~~~l~ 214 (447)
T KOG2751|consen 145 LNKLDKEVEDAEDEVDTYKACLQRLEQQNQDV--SEEDLLKELKNLKEEEERLLQQL--------EELEKEEAELDHQLK 214 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc--chHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Confidence 45555666666666667777776666532221 12222222222222222222222 445555777777777
Q ss_pred HHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhh
Q 005601 178 KSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTS 236 (688)
Q Consensus 178 eLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~al 236 (688)
+++.. .+++-..-+...+.++.=+-..-..+.+++.+..+++---.+|..|++.|++-
T Consensus 215 e~~~~-~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~ktNv~n 272 (447)
T KOG2751|consen 215 ELEFK-AERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRKTNVFN 272 (447)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 77776 23332223333333333333444456677777777777777888888877753
No 344
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=80.28 E-value=38 Score=36.58 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHH
Q 005601 111 ISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEE 157 (688)
Q Consensus 111 ~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~ 157 (688)
.++++...+.+++.+|.-|+-+...|.++...+.=+|+-|++.|++.
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~ 124 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEEL 124 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999998888888887654
No 345
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=80.27 E-value=1.6e+02 Score=36.52 Aligned_cols=37 Identities=11% Similarity=0.165 Sum_probs=28.4
Q ss_pred HHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHH
Q 005601 209 QIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLET 245 (688)
Q Consensus 209 qEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~ 245 (688)
-+|+...-.+++.+..+.+.+.++++++...|-.||.
T Consensus 773 e~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~lE~ 809 (984)
T COG4717 773 EEELALLEEAIDALDEEVEELHAQVAALSRQIAQLEG 809 (984)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3666667778888888888888888888888877763
No 346
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=79.86 E-value=69 Score=32.04 Aligned_cols=147 Identities=18% Similarity=0.254 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHhhhhhhhhhccchhhHHHHHhhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 40 LQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESV------SISYLHQLKVLRDMLDAKQKELAEISRISA 113 (688)
Q Consensus 40 LE~ENsrLr~QIe~~eeti~tltrEvs~IK~~YEsEL~DARklL------~kk~~~EleELk~~L~kKeKEL~~ae~~~~ 113 (688)
|+.-...-...+.+..... ..+.-.++.-||.|+.+-|.-| +..--..++.-...|++++..|..-+..+.
T Consensus 40 ~~~A~~eAe~~~ke~~~ea---kee~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~ 116 (201)
T PF12072_consen 40 LEEAEREAEAIKKEAELEA---KEEAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELE 116 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhch-----HHHHHHHHHHHHHHHHHHhh
Q 005601 114 EQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENA-----EADLKAAVQKSQLETQEKLK 188 (688)
Q Consensus 114 ~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~-----EakLqqALqeLR~Qa~ee~k 188 (688)
..+..+..+...|.........-=+.+.++-. +++|..|-..+++- ..-++....+.+.+|..+-+
T Consensus 117 ~~~~~l~~~~~e~~~~~~~~~~~Le~iAglT~---------eEAk~~Ll~~le~e~~~e~a~~ir~~eeeak~~A~~~Ar 187 (201)
T PF12072_consen 117 QRKEELEEREEELEELIEEQQQELEEIAGLTA---------EEAKEILLEKLEEEARREAAALIRRIEEEAKEEADKKAR 187 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHHHh
Q 005601 189 RLSDAASRRE 198 (688)
Q Consensus 189 r~~Daq~r~n 198 (688)
+.--..|.++
T Consensus 188 ~Ii~~AiQR~ 197 (201)
T PF12072_consen 188 RIIATAIQRY 197 (201)
T ss_pred HHHHHHHHhh
No 347
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=79.82 E-value=18 Score=31.51 Aligned_cols=63 Identities=16% Similarity=0.231 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHH---hhhhhhhhchHHHHHHHHHHHH
Q 005601 118 EMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEER---NLRRVDRENAEADLKAAVQKSQ 180 (688)
Q Consensus 118 ~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~R---kqLEVDlEN~EakLqqALqeLR 180 (688)
.|..|+.++++|+..+..|.-++.+++.+...|..+-..++ .+|..++.....+|..-|.+|.
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 57788899999888888888888777776666653332222 2222444444555555555543
No 348
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=79.76 E-value=46 Score=29.94 Aligned_cols=63 Identities=22% Similarity=0.242 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHH
Q 005601 86 SYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTID 148 (688)
Q Consensus 86 k~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~ 148 (688)
++-...+++...+.+|.+++...+..+.-+...+..-..+|-++...+..+..+++-+...++
T Consensus 7 ~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~ 69 (96)
T PF08647_consen 7 SMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLS 69 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344445555566666666666555555555555555555555555555555555444444433
No 349
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=79.65 E-value=41 Score=33.78 Aligned_cols=34 Identities=21% Similarity=0.118 Sum_probs=24.5
Q ss_pred HHhhhhhhhhhccchh--------hHHHHHhhHHHHHHHHHH
Q 005601 49 KQLESQVLEIDKLRNE--------NRVVVERHEKEMKEMKES 82 (688)
Q Consensus 49 ~QIe~~eeti~tltrE--------vs~IK~~YEsEL~DARkl 82 (688)
-||..++++-++|.|= .+-|+-.|+.+|.-|++-
T Consensus 28 TQL~AFeEvg~~L~RTsAACGFRWNs~VRkqY~~~i~~AKkq 69 (161)
T TIGR02894 28 TQLSAFEEVGRALNRTAAACGFRWNAYVRKQYEEAIELAKKQ 69 (161)
T ss_pred HHHHHHHHHHHHHcccHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777654 456788899999877653
No 350
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=79.58 E-value=81 Score=32.64 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005601 261 VEELENEIKKLREELESEKAAR 282 (688)
Q Consensus 261 l~~lE~Ei~rLR~EMe~QL~EY 282 (688)
+...+.++..++..+++.....
T Consensus 181 ~~~~~~~~~~~~~~l~~a~~~l 202 (327)
T TIGR02971 181 VDLAQAEVKSALEAVQQAEALL 202 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666665555544333
No 351
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.29 E-value=1.5e+02 Score=35.54 Aligned_cols=195 Identities=11% Similarity=0.089 Sum_probs=108.9
Q ss_pred hhhhhhHHHHHhhhhhhhhhccchhhHHHHHhhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 40 LQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESV-----------SISYLHQLKVLRDMLDAKQKELAEI 108 (688)
Q Consensus 40 LE~ENsrLr~QIe~~eeti~tltrEvs~IK~~YEsEL~DARklL-----------~kk~~~EleELk~~L~kKeKEL~~a 108 (688)
-+.+|+.|++.+....-...-+++=+..+-..|-.-.++.--++ ++-+..|++-|+.+.++.+++-..+
T Consensus 279 ~~~~~~~~~rK~s~s~~~r~~~~~s~~~~s~~~~~~~S~~~~~~~~~~D~N~~~Q~~~~~~~~~~~~Tr~Er~Er~~D~L 358 (852)
T KOG4787|consen 279 VENENEELLKKLSKASKLRPPMIRSARLVTACTCQKVSDITFLMFCRCDGNAHLQLELAESQVQHLNTKIERLEKTNDHL 358 (852)
T ss_pred cccccHHHHHHHhhhhcccchhhhhhhhhhhhccccchhHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 46777777777666554444445555555555555555544443 5666778888888888888888888
Q ss_pred HHHHHHHHHHHHHHHH------------HHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhh--------hhhch
Q 005601 109 SRISAEQKHEMEDLND------------RLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRV--------DRENA 168 (688)
Q Consensus 109 e~~~~~~Es~indLea------------rLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEV--------DlEN~ 168 (688)
.+++..++..++.--+ .+-...-+.+.++-+++.++ -+-.+...|++|+. --+|.
T Consensus 359 ~rri~~~~~~~~R~~~s~A~~K~~E~K~~~~~~~~~~r~i~~~~~~~~-----~~~~~s~~~r~L~~~~~~~~~~~~~~~ 433 (852)
T KOG4787|consen 359 NKKIVELEADCKRGGVTSAHSKAGEFKLTPEMEKDMSKMIVTISELER-----KNLELTTQVKQLETKVTPKPNFVVPSG 433 (852)
T ss_pred HHHHHHHhhhhcccchHHHHHHhhhhhcChHhHhHHHHHHHHHHHHHH-----hcccHHHHHHHHhhccccchhhcCCCc
Confidence 8888888877664322 11111222222222222222 23344566666660 11121
Q ss_pred -----HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHH-HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHH-------hhh
Q 005601 169 -----EADLKAAVQKSQLETQEKLKRLSDAASRRELEQ-QEVINKLQIAEKQSSLQVESLKLKLDETRER-------LVT 235 (688)
Q Consensus 169 -----EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE-~~~a~kaqEElke~R~RVEsL~sKL~dLe~~-------n~a 235 (688)
--++|+..-+||.= ++++ -.....++--+-++.-.-..|+++|..+..+ +..
T Consensus 434 s~~~Ei~~~QA~M~E~~Dt---------------~~~~dV~~~~sL~~~LeqAsK~CRIL~~RL~K~~R~q~R~~~~~~~ 498 (852)
T KOG4787|consen 434 TTTTELRKEQAQMNELKDT---------------VFKSDVQKVISLATKLEQANKQCRILNERLNKLHRKQVRDGEIQYS 498 (852)
T ss_pred chHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHhchhHHHHHHHhHHHHHHHhhhhhccc
Confidence 23344444444443 2222 3333444555555556666777777776532 344
Q ss_pred hHHHHHHHHHHHHHHHhhh
Q 005601 236 SDNKVRLLETQVCKEQNVS 254 (688)
Q Consensus 236 le~RIReLE~qL~~Er~~s 254 (688)
...+|+-||.-+..=..-+
T Consensus 499 d~~kIK~LE~e~R~S~~Ls 517 (852)
T KOG4787|consen 499 DELKIKILELEKRLSEKLA 517 (852)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5678888887776655555
No 352
>PF15456 Uds1: Up-regulated During Septation
Probab=79.21 E-value=11 Score=35.80 Aligned_cols=90 Identities=23% Similarity=0.264 Sum_probs=60.2
Q ss_pred HHHHHhHHHHHHHHhhHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhH
Q 005601 138 EIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSL 217 (688)
Q Consensus 138 eelkelkaei~eLe~qLee~RkqLEVDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaqEElke~R~ 217 (688)
+++.++|+++.-|...++-+|+.+.. +.|+..|.+. |-+.|..--+..+--.+.+.++.|++-.+..
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl~l-----e~k~RdAa~s--------l~~l~~~~~~~~~~~~~~~~~~eeel~~~~r 88 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKLAL-----ESKIRDAAHS--------LSRLYSSSSRRARFSRESSLKAEEELAESDR 88 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH--------HHHhcCCCccccCCCcchHHHHHHHHHHHHh
Confidence 68888898888888888888877652 2333322222 2222332222222224678888899999999
Q ss_pred HHHHHHHhHHHHHHHhhhhHHHH
Q 005601 218 QVESLKLKLDETRERLVTSDNKV 240 (688)
Q Consensus 218 RVEsL~sKL~dLe~~n~ale~RI 240 (688)
+|+.+..+|..++.+......|+
T Consensus 89 k~ee~~~eL~~le~R~~~~~~rL 111 (124)
T PF15456_consen 89 KCEELAQELWKLENRLAEVRQRL 111 (124)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888877766554
No 353
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=79.02 E-value=53 Score=33.36 Aligned_cols=17 Identities=35% Similarity=0.544 Sum_probs=11.9
Q ss_pred HHHHhhHHHHHHHHHHH
Q 005601 67 VVVERHEKEMKEMKESV 83 (688)
Q Consensus 67 ~IK~~YEsEL~DARklL 83 (688)
.|...||.|+.++..++
T Consensus 67 ~iveqLe~ev~EAe~vV 83 (188)
T PF05335_consen 67 QIVEQLEQEVREAEAVV 83 (188)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35667777777777665
No 354
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=78.97 E-value=1.3e+02 Score=34.68 Aligned_cols=13 Identities=31% Similarity=0.503 Sum_probs=9.3
Q ss_pred hhccHHHHHHHHH
Q 005601 327 FYSTTEEISVLFA 339 (688)
Q Consensus 327 fystteeis~lfa 339 (688)
|+|-..||...|.
T Consensus 451 ~~Slaaeid~~sq 463 (502)
T KOG0982|consen 451 FFSLAAEIDEMSQ 463 (502)
T ss_pred HHHHHHHHHHHhH
Confidence 5677778887763
No 355
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=78.91 E-value=91 Score=32.84 Aligned_cols=20 Identities=5% Similarity=0.082 Sum_probs=8.2
Q ss_pred HHhHHHHHHHHhhHHHHHhh
Q 005601 141 KSQKVTIDELKTQLDEERNL 160 (688)
Q Consensus 141 kelkaei~eLe~qLee~Rkq 160 (688)
..+++++...+.+++.++++
T Consensus 117 ~~~~~~i~~a~~~l~~a~~~ 136 (346)
T PRK10476 117 ASANEQVERARANAKLATRT 136 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333
No 356
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=78.86 E-value=77 Score=32.00 Aligned_cols=41 Identities=12% Similarity=0.202 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 90 QLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASM 130 (688)
Q Consensus 90 EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~ 130 (688)
.+.+.+..+.........+++.+..++..+.+++.+--.|+
T Consensus 39 ~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al 79 (219)
T TIGR02977 39 TLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELAL 79 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444434444444444444444444444443333
No 357
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=78.71 E-value=78 Score=33.00 Aligned_cols=45 Identities=13% Similarity=0.231 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhh
Q 005601 116 KHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNL 160 (688)
Q Consensus 116 Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~Rkq 160 (688)
..-||.|+.-+.++.+++....+.+..+-.++..|+.+.++.|+.
T Consensus 59 ~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 59 NQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555555555555554
No 358
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.71 E-value=1.4e+02 Score=34.73 Aligned_cols=79 Identities=22% Similarity=0.221 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhHHH--------------------------------------HHHHhhhhHHHH
Q 005601 199 LEQQEVINKLQIAEKQSSLQVESLKLKLDE--------------------------------------TRERLVTSDNKV 240 (688)
Q Consensus 199 ReE~~~a~kaqEElke~R~RVEsL~sKL~d--------------------------------------Le~~n~ale~RI 240 (688)
|.+...|.+..++-++++..+.++..+|.- .=.-+-++-..+
T Consensus 399 RKq~~DI~Kil~etreLqkq~ns~se~L~Rsfavtdellf~sakhddhvR~aykllt~iH~nc~ei~E~i~~tg~~~rev 478 (521)
T KOG1937|consen 399 RKQEQDIVKILEETRELQKQENSESEALNRSFAVTDELLFMSAKHDDHVRLAYKLLTRIHLNCMEILEMIRETGALKREV 478 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHH
Confidence 334666777777777777777776666542 222233455667
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 241 RLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEK 279 (688)
Q Consensus 241 ReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL 279 (688)
|+||.|+..|.... --+.++.+-..+..+|++.++-+
T Consensus 479 rdlE~qI~~E~~k~--~l~slEkl~~Dyqairqen~~L~ 515 (521)
T KOG1937|consen 479 RDLESQIYVEEQKQ--YLKSLEKLHQDYQAIRQENDQLF 515 (521)
T ss_pred HHHHHHHhHHHHHH--HHhhHHHHHHHHHHHHHHHHHHH
Confidence 88888887654332 14555666666666666655443
No 359
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=78.42 E-value=88 Score=32.41 Aligned_cols=90 Identities=16% Similarity=0.058 Sum_probs=58.9
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hHhHH
Q 005601 225 KLDETRERLVTSDNKVRLLETQVCKEQ-NVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGL------ELDIL 297 (688)
Q Consensus 225 KL~dLe~~n~ale~RIReLE~qL~~Er-~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaL------DlEIa 297 (688)
++..+...-...+.++++.+.....+. ..+.-+.+.+..+...+.+.+.+++.--.+|+..+..--.. ++. .
T Consensus 119 ~~k~~~ksKk~Ye~~Cke~~~a~~~~~~~~~~~~~ke~~K~~~Kl~K~~~~~~k~~~~Y~~~v~~l~~~~~~w~~~~~-~ 197 (240)
T cd07672 119 QFKKTMESKKNYEQKCRDKDEAEQAVNRNANLVNVKQQEKLFAKLAQSKQNAEDADRLYMQNISVLDKIREDWQKEHV-K 197 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 334444455556777777665444332 22223367888888889999998888888888876653332 222 5
Q ss_pred HHHhhhHHHHHHhhHhHh
Q 005601 298 AATRDLDFERRRLKAARE 315 (688)
Q Consensus 298 AYrKLLEgEE~RLkgare 315 (688)
++...-..|+.||.--|.
T Consensus 198 ~c~~fq~lEeeRi~f~k~ 215 (240)
T cd07672 198 ACEFFEKQECERINFFRN 215 (240)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777887889999876554
No 360
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=78.27 E-value=44 Score=28.93 Aligned_cols=28 Identities=11% Similarity=0.205 Sum_probs=13.2
Q ss_pred HHHHhHHHHHHHhhhhHHHHHHHHHHHH
Q 005601 221 SLKLKLDETRERLVTSDNKVRLLETQVC 248 (688)
Q Consensus 221 sL~sKL~dLe~~n~ale~RIReLE~qL~ 248 (688)
.|..++..++..+..+..-|...|..|.
T Consensus 76 ~l~~q~~~l~~~l~~l~~~~~~~e~~l~ 103 (127)
T smart00502 76 VLEQQLESLTQKQEKLSHAINFTEEALN 103 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444455555444443
No 361
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=77.94 E-value=1e+02 Score=32.81 Aligned_cols=194 Identities=11% Similarity=0.105 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----------HHhHHHHHHHHhhHHHHHh
Q 005601 91 LKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIM-----------KSQKVTIDELKTQLDEERN 159 (688)
Q Consensus 91 leELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeel-----------kelkaei~eLe~qLee~Rk 159 (688)
...|+.++.+..+-|..|...=..+...++....-|.........+..-+ ..+...+..+-..|..+++
T Consensus 128 ~~~l~~~~~k~~~~L~~A~~sD~~l~~~~~~~~~~l~lL~~~~~~l~~~~Ps~~~~~~~~~~~~v~~Lr~~l~~l~~lk~ 207 (342)
T cd08915 128 AKELYEKVTKLRGYLEQASNSDNEVLQCYESIDPNLVLLCGGYKELKAFIPSPYPALDPEVSEVVSSLRPLLNEVSELEK 207 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCChHHHHHhCCCccccCCchhhHHHHHHHHHHHHHHHHHH
Confidence 35788888888888888888888888888877666655544333322221 1222222222222233333
Q ss_pred hhh---hhhhch--HHHHHH-HHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHh
Q 005601 160 LRR---VDRENA--EADLKA-AVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERL 233 (688)
Q Consensus 160 qLE---VDlEN~--EakLqq-ALqeLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n 233 (688)
++. .+|... ..++-. -|...+.....+++-.|+..+..+....+.+......-..+=..|...+.++......
T Consensus 208 eR~~~~~~lk~~~~~ddI~~~ll~~~~~~~~~~~e~lf~~eL~kf~~~~~~i~~~~~~Q~~ll~~i~~~~~~f~~~~~~- 286 (342)
T cd08915 208 ERERFISELEIKSRNNDILPKLITEYKKNGTTEFEDLFEEHLKKFDKDLTYVEKTKKKQIELIKEIDAANQEFSQVKNS- 286 (342)
T ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHhhccccchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 332 333222 111111 1112211111234556666776666666666655555555555555555555444443
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHH
Q 005601 234 VTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAA 299 (688)
Q Consensus 234 ~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAY 299 (688)
......-+..++.=+..| .-...++.-+..=+.=|.+|..+...|-.+|..|
T Consensus 287 ---~~~~~~r~~~l~~L~~ay-----------~~y~el~~~l~eG~~FY~dL~~~~~~l~~~~~~f 338 (342)
T cd08915 287 ---NDSLDPREEALQDLEASY-----------KKYLELKENLNEGSKFYNDLIEKVNRLLEECEDF 338 (342)
T ss_pred ---chhhhHHHHHHHHHHHHH-----------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222332222222 3445666777777778888888888887777766
No 362
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=77.94 E-value=56 Score=30.45 Aligned_cols=33 Identities=18% Similarity=0.046 Sum_probs=16.2
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005601 191 SDAASRRELEQQEVINKLQIAEKQSSLQVESLK 223 (688)
Q Consensus 191 ~Daq~r~nReE~~~a~kaqEElke~R~RVEsL~ 223 (688)
|..++.........+.....+++.+..-|+.|.
T Consensus 18 l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~ 50 (140)
T PRK03947 18 LQAQIEALQQQLEELQASINELDTAKETLEELK 50 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444444444444555555555555555555444
No 363
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=77.87 E-value=8 Score=32.26 Aligned_cols=42 Identities=31% Similarity=0.376 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 237 DNKVRLLETQVCKEQNVS----ASWKKRVEELENEIKKLREELESE 278 (688)
Q Consensus 237 e~RIReLE~qL~~Er~~s----~~~~k~l~~lE~Ei~rLR~EMe~Q 278 (688)
..|+++||.+|..||... ..+++++..++.|-+.||.+|.-+
T Consensus 3 ~~Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 3 LLRLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERL 48 (52)
T ss_pred HHHHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999432 257889999999999999998754
No 364
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=77.87 E-value=75 Score=32.24 Aligned_cols=50 Identities=12% Similarity=0.187 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 79 MKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQ 131 (688)
Q Consensus 79 ARklL~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~s 131 (688)
+.+++.+++.. -|..+-++-.++|..+++...+.+....+.+..|..+..
T Consensus 70 L~k~~~~pI~~---vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~ 119 (204)
T PRK09174 70 MSRVILPRIGG---IIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARA 119 (204)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444432 334445555667777777777777777777777766654
No 365
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=77.64 E-value=55 Score=29.61 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=6.2
Q ss_pred HHHHhHHHHHHHHhhH
Q 005601 139 IMKSQKVTIDELKTQL 154 (688)
Q Consensus 139 elkelkaei~eLe~qL 154 (688)
.+...+.++..+...+
T Consensus 15 ~l~~kr~e~~~~~~~~ 30 (126)
T PF13863_consen 15 ALDTKREEIERREEQL 30 (126)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444443333333
No 366
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=77.43 E-value=75 Score=35.70 Aligned_cols=102 Identities=13% Similarity=0.129 Sum_probs=57.8
Q ss_pred HHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHH-HHHHHHHHHHH
Q 005601 134 TEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQ-QEVINKLQIAE 212 (688)
Q Consensus 134 k~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE-~~~a~kaqEEl 212 (688)
..+-+++.+++.....|+..++.++.++..|+ .-+.++||+-|-- ..| -|+|+.-..+- ++.+..++.++
T Consensus 215 ~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~----~~~~~~LqEEr~R----~er-LEeqlNd~~elHq~Ei~~LKqeL 285 (395)
T PF10267_consen 215 QKILEELREIKESQSRLEESIEKLKEQYQREY----QFILEALQEERYR----YER-LEEQLNDLTELHQNEIYNLKQEL 285 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHH----HHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666665554443 2344555554443 111 35666666555 77777777777
Q ss_pred HHHhHHHHHHH-HhHHHHHHHhhhhHHHHHHHH
Q 005601 213 KQSSLQVESLK-LKLDETRERLVTSDNKVRLLE 244 (688)
Q Consensus 213 ke~R~RVEsL~-sKL~dLe~~n~ale~RIReLE 244 (688)
.-+--+|+=+. -++-|+...+....+||.-||
T Consensus 286 a~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 286 ASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 66666665432 344555555555555555555
No 367
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=76.76 E-value=66 Score=33.50 Aligned_cols=14 Identities=21% Similarity=0.216 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHH
Q 005601 169 EADLKAAVQKSQLE 182 (688)
Q Consensus 169 EakLqqALqeLR~Q 182 (688)
=..|+..+.++|.+
T Consensus 90 y~~Lk~~in~~R~e 103 (230)
T PF10146_consen 90 YKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHH
Confidence 44566666666665
No 368
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=76.69 E-value=29 Score=39.05 Aligned_cols=57 Identities=18% Similarity=0.335 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhH
Q 005601 86 SYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQK 144 (688)
Q Consensus 86 k~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelk 144 (688)
++...+++|+.-.+...++ .+++.++....++..+...++++..+.+++.+-++..+
T Consensus 217 ~Ll~kVdDLQD~VE~LRkD--V~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~k 273 (424)
T PF03915_consen 217 RLLTKVDDLQDLVEDLRKD--VVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEK 273 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3333344444444444443 33445555555555555555555444444444444444
No 369
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=76.48 E-value=51 Score=31.70 Aligned_cols=88 Identities=9% Similarity=0.172 Sum_probs=54.0
Q ss_pred HhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHH
Q 005601 131 QSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQI 210 (688)
Q Consensus 131 sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaqE 210 (688)
.-|+.+.+-.+.+-++++.+-.-|..+|+.|.--+++-..+|.+. .+.+...++
T Consensus 36 vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~--------------------------~ei~~~i~~ 89 (126)
T PF07889_consen 36 VTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQ--------------------------KEISKQIKD 89 (126)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--------------------------HHHHHHHHH
Confidence 357788888888888888888888888888775444444443321 122223344
Q ss_pred HHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHH
Q 005601 211 AEKQSSLQVESLKLKLDETRERLVTSDNKVRLLE 244 (688)
Q Consensus 211 Elke~R~RVEsL~sKL~dLe~~n~ale~RIReLE 244 (688)
++.+.+.-++.+...+..++.....|+.||-+||
T Consensus 90 eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 90 EVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555555555555555555556655554
No 370
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=76.37 E-value=81 Score=30.91 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 102 QKELAEISRISAEQKHEMEDLNDRLSAS 129 (688)
Q Consensus 102 eKEL~~ae~~~~~~Es~indLearLsaa 129 (688)
.+.+..|+....+.+....+.+.+|..+
T Consensus 61 ~~~l~~Ae~~~~eA~~~~~e~e~~L~~A 88 (184)
T CHL00019 61 LNTIRNSEERREEAIEKLEKARARLRQA 88 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 371
>PF14992 TMCO5: TMCO5 family
Probab=76.28 E-value=73 Score=34.44 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHH
Q 005601 118 EMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEE 157 (688)
Q Consensus 118 ~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~ 157 (688)
-...|...-+..++-+...++.+.+|..+|.+....+++.
T Consensus 12 d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~ 51 (280)
T PF14992_consen 12 DEQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRS 51 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCch
Confidence 3344445555566667777777777777777766655443
No 372
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=76.16 E-value=1.6e+02 Score=34.09 Aligned_cols=25 Identities=12% Similarity=0.076 Sum_probs=17.5
Q ss_pred HHHHHhHHHHHHHHhhHHHHHhhhh
Q 005601 138 EIMKSQKVTIDELKTQLDEERNLRR 162 (688)
Q Consensus 138 eelkelkaei~eLe~qLee~RkqLE 162 (688)
-.++.|-+.|++|+..-.-+.+.|.
T Consensus 201 alvN~LwKrmdkLe~ekr~Lq~KlD 225 (552)
T KOG2129|consen 201 ALVNSLWKRMDKLEQEKRYLQKKLD 225 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3466777778887777777776665
No 373
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=76.03 E-value=1.6e+02 Score=34.12 Aligned_cols=118 Identities=20% Similarity=0.204 Sum_probs=69.4
Q ss_pred hhhhhhhhhh------hHHHHHhhhhhhhhhccchhhHHHHHhhHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHHHH
Q 005601 35 DDFRSLQRSN------TELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKES-V--SISYLHQLKVLRDMLDAKQKEL 105 (688)
Q Consensus 35 DRVR~LE~EN------srLr~QIe~~eeti~tltrEvs~IK~~YEsEL~DARkl-L--~kk~~~EleELk~~L~kKeKEL 105 (688)
+|.|--|+|- .+||..|+++..-.+++..|+..=|-.-| ||.||=.. + --|+.++.-+|+-++..+-.-+
T Consensus 282 er~~wtE~ES~WIsLteeLR~dle~~r~~aek~~~EL~~Ek~c~e-EL~~al~~A~~GhaR~lEqYadLqEk~~~Ll~~H 360 (488)
T PF06548_consen 282 ERQRWTEAESKWISLTEELRVDLESSRSLAEKLEMELDSEKKCTE-ELDDALQRAMEGHARMLEQYADLQEKHNDLLARH 360 (488)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555553 46777777777777777777766665543 77776433 3 5689999999988887655544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHhHHHHHHHHhhHHHHHhhhh
Q 005601 106 AEISRISAEQKHEMEDLNDRLSASMQSCTEAN-EIMKSQKVTIDELKTQLDEERNLRR 162 (688)
Q Consensus 106 ~~ae~~~~~~Es~indLearLsaa~sdrk~ae-eelkelkaei~eLe~qLee~RkqLE 162 (688)
.....=+.+.+ -.+|++..+.++ -=++.|.++|.-|+-.-+.+|..|.
T Consensus 361 r~i~egI~dVK---------kaAakAg~kG~~~rF~~slaaEiSalr~erEkEr~~l~ 409 (488)
T PF06548_consen 361 RRIMEGIEDVK---------KAAAKAGVKGAESRFINSLAAEISALRAEREKERRFLK 409 (488)
T ss_pred HHHHHHHHHHH---------HHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443343333 234444444442 2345555555555555555555554
No 374
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=75.96 E-value=37 Score=29.39 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=12.6
Q ss_pred HHHHHHHhHHHHHHHHHHhHHHHHHHH
Q 005601 125 RLSASMQSCTEANEIMKSQKVTIDELK 151 (688)
Q Consensus 125 rLsaa~sdrk~aeeelkelkaei~eLe 151 (688)
+|..+...+.+|.+++..+++++..++
T Consensus 41 ~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 41 QLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444455555555544443
No 375
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=75.95 E-value=86 Score=32.14 Aligned_cols=22 Identities=0% Similarity=-0.153 Sum_probs=13.2
Q ss_pred cccccCCCCCCCCcccccccCC
Q 005601 362 SVDIDLCVPDGENSRTIVGEKL 383 (688)
Q Consensus 362 ~~~~Dln~~~~~~~g~~~~~~~ 383 (688)
.|.+..-..|.-++|-+++-..
T Consensus 206 ~v~~~~~vdp~ligGi~l~~g~ 227 (246)
T TIGR03321 206 EIRLRFQTEPDLIGGIELTAGG 227 (246)
T ss_pred CeeEEeeeCchhcCceEEEECC
Confidence 4555555567777777665443
No 376
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.92 E-value=1.6e+02 Score=34.24 Aligned_cols=98 Identities=13% Similarity=0.084 Sum_probs=79.8
Q ss_pred HHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH
Q 005601 84 SISYLHQLK------------------VLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKV 145 (688)
Q Consensus 84 ~kk~~~Ele------------------ELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelka 145 (688)
.-++|+|.. +|+.+++--+.+..+..-++....+.+.+|+-.=..+...+.++.....+|..
T Consensus 311 d~~~W~QA~~dnp~s~kliPVpvvGF~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~ 390 (508)
T KOG3091|consen 311 DQRIWRQAMKDNPPSNKLIPVPVVGFEDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSH 390 (508)
T ss_pred CHHHHHHHhhcCCCcccccceeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 678888875 89999999999999999999999999999997777788888888889999998
Q ss_pred HHHHHHhhHHHHHhhhhhhhhchHHHHHHHHHHHHHH
Q 005601 146 TIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLE 182 (688)
Q Consensus 146 ei~eLe~qLee~RkqLEVDlEN~EakLqqALqeLR~Q 182 (688)
.|-++-..++.+|+.=- -|--.|.+|..-|+.|-.+
T Consensus 391 RiLRv~ikqeilr~~G~-~L~~~EE~Lr~Kldtll~~ 426 (508)
T KOG3091|consen 391 RILRVMIKQEILRKRGY-ALTPDEEELRAKLDTLLAQ 426 (508)
T ss_pred HHHHHHHHHHHHhccCC-cCCccHHHHHHHHHHHHHH
Confidence 88888887777776432 3333377787778877777
No 377
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=75.69 E-value=1e+02 Score=31.80 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 89 HQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLND 124 (688)
Q Consensus 89 ~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLea 124 (688)
.+..+|+.+++++.+......+.+..|+..+..+-+
T Consensus 23 ~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~ 58 (207)
T PF05010_consen 23 EEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIE 58 (207)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 557888888888888888777777777776665433
No 378
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=75.66 E-value=1.2e+02 Score=32.59 Aligned_cols=76 Identities=20% Similarity=0.240 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHH
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRISAE-------QKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 156 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~~~~-------~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee 156 (688)
+..+..+|..++..|..|+++....-..+.. .+..+...+.++.. ..+.+.....+...++++..+.|..
T Consensus 17 V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~---~~~ei~~~~~~a~~~L~~a~P~L~~ 93 (344)
T PF12777_consen 17 VEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEK---QAKEIEEIKEEAEEELAEAEPALEE 93 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH---HHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666655543333221 11111122222211 1223333444556677777888888
Q ss_pred HHhhhh
Q 005601 157 ERNLRR 162 (688)
Q Consensus 157 ~RkqLE 162 (688)
++.-|.
T Consensus 94 A~~al~ 99 (344)
T PF12777_consen 94 AQEALK 99 (344)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877666
No 379
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=75.53 E-value=2.1e+02 Score=35.81 Aligned_cols=19 Identities=32% Similarity=0.492 Sum_probs=11.4
Q ss_pred hHHHHHhhHHHHHHHHHHH
Q 005601 65 NRVVVERHEKEMKEMKESV 83 (688)
Q Consensus 65 vs~IK~~YEsEL~DARklL 83 (688)
|+.++.+++.||..+|+.-
T Consensus 1031 ~~el~~rq~~el~~~~~~~ 1049 (1189)
T KOG1265|consen 1031 VRELVNRQTQELLEMRREQ 1049 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666554
No 380
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=75.46 E-value=21 Score=32.22 Aligned_cols=82 Identities=15% Similarity=0.215 Sum_probs=0.0
Q ss_pred cchhhhhhhhhhhhHHHHHhhhhhhhhhccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 32 LSLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRI 111 (688)
Q Consensus 32 islDRVR~LE~ENsrLr~QIe~~eeti~tltrEvs~IK~~YEsEL~DARklL~kk~~~EleELk~~L~kKeKEL~~ae~~ 111 (688)
++..+++-||.-|..-..........+.-|++.+..++..|+. ++.|..+++.+-..+.+.+.-...+..-
T Consensus 18 ~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~---------l~~~l~~Id~Ie~~V~~LE~~v~~LD~y 88 (99)
T PF10046_consen 18 ATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEE---------LQPYLQQIDQIEEQVTELEQTVYELDEY 88 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 005601 112 SAEQKHEMEDL 122 (688)
Q Consensus 112 ~~~~Es~indL 122 (688)
.+.+|++|+.|
T Consensus 89 sk~LE~k~k~l 99 (99)
T PF10046_consen 89 SKELESKFKKL 99 (99)
T ss_pred HHHHHHHhhcC
No 381
>PRK11546 zraP zinc resistance protein; Provisional
Probab=75.44 E-value=14 Score=36.10 Aligned_cols=67 Identities=19% Similarity=0.267 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHh
Q 005601 80 KESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERN 159 (688)
Q Consensus 80 RklL~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~Rk 159 (688)
-..|..+|..+...||.+|-.|..| |++.++.-+-=...|..+.+||..|+.+|.+.|.
T Consensus 52 ~q~I~~~f~~~t~~LRqqL~aKr~E---------------------LnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~ 110 (143)
T PRK11546 52 WQKIHNDFYAQTSALRQQLVSKRYE---------------------YNALLTANPPDSSKINAVAKEMENLRQSLDELRV 110 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555444 4444444444445577788888888888888888
Q ss_pred hhhhhhhc
Q 005601 160 LRRVDREN 167 (688)
Q Consensus 160 qLEVDlEN 167 (688)
.+.+.+.+
T Consensus 111 ~~~~~~~k 118 (143)
T PRK11546 111 KRDIAMAE 118 (143)
T ss_pred HHHHHHHH
Confidence 77655543
No 382
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=75.34 E-value=83 Score=30.54 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 100 AKQKELAEISRISAEQKHEMEDLNDRLSASMQ 131 (688)
Q Consensus 100 kKeKEL~~ae~~~~~~Es~indLearLsaa~s 131 (688)
+-.+++..|+....+.+....+.+.+|..+..
T Consensus 51 ~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ 82 (173)
T PRK13460 51 GVQNDINKASELRLEAEALLKDYEARLNSAKD 82 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444433
No 383
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=75.31 E-value=83 Score=31.07 Aligned_cols=37 Identities=11% Similarity=0.154 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005601 96 DMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQS 132 (688)
Q Consensus 96 ~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sd 132 (688)
.+-++-.+++..++....+.+....+.+.+|..+...
T Consensus 62 ~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~E 98 (181)
T PRK13454 62 ERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAE 98 (181)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556666666666666666666666655543
No 384
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=75.25 E-value=1.1e+02 Score=31.88 Aligned_cols=69 Identities=10% Similarity=0.145 Sum_probs=43.2
Q ss_pred HHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhh------------hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 214 QSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNV------------SASWKKRVEELENEIKKLREELESEKAA 281 (688)
Q Consensus 214 e~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~------------s~~~~k~l~~lE~Ei~rLR~EMe~QL~E 281 (688)
..+.++..+..++..++.++..+++++..+...+..|..- +...+..++..+.++..++.+.....+.
T Consensus 132 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 211 (301)
T PF14362_consen 132 SFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQIDAAIAA 211 (301)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4556666777777777777777777777777777776654 3334455555555555555554444433
Q ss_pred H
Q 005601 282 R 282 (688)
Q Consensus 282 Y 282 (688)
.
T Consensus 212 l 212 (301)
T PF14362_consen 212 L 212 (301)
T ss_pred H
Confidence 3
No 385
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=75.21 E-value=34 Score=38.32 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=10.6
Q ss_pred hhhcccccccccCCCCCC
Q 005601 534 ASEVAGSWACSTAPSVHG 551 (688)
Q Consensus 534 asevagswa~~t~psvhg 551 (688)
.-++...+.+.+.|.++.
T Consensus 348 ~~~~~a~~~~~~vP~~~~ 365 (525)
T TIGR02231 348 SFELPAALNYRAVPSLNS 365 (525)
T ss_pred EEecccceEEEEcccCCc
Confidence 334555666666776653
No 386
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=75.20 E-value=73 Score=29.86 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005601 89 HQLKVLRDMLDAKQKELAEI 108 (688)
Q Consensus 89 ~EleELk~~L~kKeKEL~~a 108 (688)
.++..|+..+.+|.+++..+
T Consensus 69 ~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 69 EELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444333333
No 387
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=75.01 E-value=23 Score=40.86 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=25.7
Q ss_pred HHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 78 EMKESV----------SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLND 124 (688)
Q Consensus 78 DARklL----------~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLea 124 (688)
++|.+| ++++...+++.+.+.+++.++|-. ...+..|+.+++.|..
T Consensus 150 ~~~eil~~~~L~T~~~~~~~~~~~k~~~~~w~~~~~~Lp~-~~~~~~yk~~v~~i~~ 205 (555)
T TIGR03545 150 DPRALLKGEDLKTVETAEEIEKSLKAMQQKWKKRKKDLPN-KQDLEEYKKRLEAIKK 205 (555)
T ss_pred CHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHh
Confidence 557777 455555555555555555555542 3345566666666655
No 388
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=74.84 E-value=44 Score=30.03 Aligned_cols=42 Identities=17% Similarity=0.270 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHH
Q 005601 202 QEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLL 243 (688)
Q Consensus 202 ~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReL 243 (688)
..++..+...+..+..+|..|..++.+++.+...+..+|++|
T Consensus 62 ~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 62 EEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555555555555543
No 389
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=74.84 E-value=1.8e+02 Score=34.23 Aligned_cols=159 Identities=18% Similarity=0.231 Sum_probs=95.0
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHH---------hhhhHHHHHHHHHHHHHHHhhhhHHH---
Q 005601 191 SDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRER---------LVTSDNKVRLLETQVCKEQNVSASWK--- 258 (688)
Q Consensus 191 ~Daq~r~nReE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~---------n~ale~RIReLE~qL~~Er~~s~~~~--- 258 (688)
|...-+.++.-.......+...++..-+++-|++++++++.- +..--+|+...|...+.-+..+.-..
T Consensus 159 ~~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~gE~e~L~~e~~rLsn~ekl~~~~~~a~~~L~ge~ 238 (557)
T COG0497 159 YQEAYQAWKQARRELEDLQEKERERAQRADLLQFQLEELEELNLQPGEDEELEEERKRLSNSEKLAEAIQNALELLSGED 238 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCC
Confidence 333444455556666677777777778888888888877653 23333333333333322222220000
Q ss_pred ---HHHHHHHHHHHHHH--H----HHHHHHHHHHHHHHHHHhhhHhHHHHHhhhHHHHHHhhHhHhhHHHhhhhhhHhhc
Q 005601 259 ---KRVEELENEIKKLR--E----ELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARERIMLRETQLRAFYS 329 (688)
Q Consensus 259 ---k~l~~lE~Ei~rLR--~----EMe~QL~EYQdLmDiKvaLDlEIaAYrKLLEgEE~RLkgareri~lretqlrafys 329 (688)
.-+..+-+-+..|. . .+..-..-..+++-.....=.||.+|...|++...||...-+||..==+=-|.|-.
T Consensus 239 ~~~~~~~~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~ 318 (557)
T COG0497 239 DTVSALSLLGRALEALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGV 318 (557)
T ss_pred CchhHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 01111111122221 0 11111122233444445556799999999999999999999999887777788889
Q ss_pred cHHHHHHHHHHHHHHHHHHH
Q 005601 330 TTEEISVLFARQQEQLKAMQ 349 (688)
Q Consensus 330 tteeis~lfakqqeqlkaMQ 349 (688)
|.+++-...+|=+++|-.+.
T Consensus 319 ~~~~l~~~~~~~~~el~~L~ 338 (557)
T COG0497 319 TIEDLLEYLDKIKEELAQLD 338 (557)
T ss_pred CHHHHHHHHHHHHHHHHHhh
Confidence 99999999999888887664
No 390
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=74.83 E-value=3.7 Score=40.82 Aligned_cols=46 Identities=26% Similarity=0.523 Sum_probs=22.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 005601 226 LDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREEL 275 (688)
Q Consensus 226 L~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EM 275 (688)
|+|++++++..-.|.--||.-| +||+.- +..++-|..|++.||.|+
T Consensus 2 LeD~EsklN~AIERnalLE~EL-dEKE~L---~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL-DEKENL---REEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHH---HHCH--------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH-HHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 6677777777777777777777 455555 666666666777666666
No 391
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=74.73 E-value=86 Score=30.42 Aligned_cols=86 Identities=21% Similarity=0.181 Sum_probs=45.0
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhHhHHHH
Q 005601 225 KLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELES-----EKAAREVAWAKVSGLELDILAA 299 (688)
Q Consensus 225 KL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~-----QL~EYQdLmDiKvaLDlEIaAY 299 (688)
||..+...+..+...+.+.+.++..=|....-.......+...+.+|+.++.. -|..|....+..-.|--+|..+
T Consensus 85 Kl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l 164 (177)
T PF13870_consen 85 KLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKEL 164 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333322333334555556666655432 3456888888888888888888
Q ss_pred HhhhHHHHHHh
Q 005601 300 TRDLDFERRRL 310 (688)
Q Consensus 300 rKLLEgEE~RL 310 (688)
++-++.=+.|+
T Consensus 165 ~rk~~~l~~~i 175 (177)
T PF13870_consen 165 ERKVEILEMRI 175 (177)
T ss_pred HHHHHHHHHhh
Confidence 77665544444
No 392
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=74.60 E-value=27 Score=31.05 Aligned_cols=51 Identities=24% Similarity=0.229 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHhHHHHHHHHhhHHHHHhhh
Q 005601 111 ISAEQKHEMEDLNDRLSASMQ---SCTEANEIMKSQKVTIDELKTQLDEERNLR 161 (688)
Q Consensus 111 ~~~~~Es~indLearLsaa~s---drk~aeeelkelkaei~eLe~qLee~RkqL 161 (688)
.+..+.+.-|.+...+..+.. ++..+..+.+.++.+|..|+.++.....++
T Consensus 44 ~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l 97 (108)
T PF02403_consen 44 ELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEEL 97 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444443 355555566666666666666665554444
No 393
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=74.58 E-value=82 Score=37.79 Aligned_cols=30 Identities=17% Similarity=0.091 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhHHHHHHHHhhHHHHHhhhh
Q 005601 133 CTEANEIMKSQKVTIDELKTQLDEERNLRR 162 (688)
Q Consensus 133 rk~aeeelkelkaei~eLe~qLee~RkqLE 162 (688)
...|.+.+.+...++.+|=..|...|..++
T Consensus 499 i~~A~~~~~~~~~~~~~li~~L~~~~~~~e 528 (771)
T TIGR01069 499 IEQAKTFYGEFKEEINVLIEKLSALEKELE 528 (771)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555544
No 394
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=74.36 E-value=88 Score=30.36 Aligned_cols=28 Identities=11% Similarity=0.146 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 102 QKELAEISRISAEQKHEMEDLNDRLSAS 129 (688)
Q Consensus 102 eKEL~~ae~~~~~~Es~indLearLsaa 129 (688)
...+..|+....+.+....+-+.+|..+
T Consensus 55 ~~~l~~Ae~~~~eA~~~~~e~e~~L~~a 82 (175)
T PRK14472 55 QSSIDRAHSAKDEAEAILRKNRELLAKA 82 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 395
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=74.33 E-value=68 Score=32.46 Aligned_cols=73 Identities=16% Similarity=0.252 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHH
Q 005601 86 SYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEER 158 (688)
Q Consensus 86 k~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~R 158 (688)
++..+.+.|..++..+.-+....+..+..++..+-+|+.........+.....++..+++.+..++..+..++
T Consensus 107 ~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 107 KLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555444455555555555555555555555554455555555555555555544444443
No 396
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=74.19 E-value=1e+02 Score=33.21 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=57.4
Q ss_pred HHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 005601 66 RVVVERHEKEMKEMKESV--SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQ 143 (688)
Q Consensus 66 s~IK~~YEsEL~DARklL--~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkel 143 (688)
+.++.+-+..|.++=..| +++..-.+.=|+.+|+..-.. ...-......+...+....++.........+.++++..
T Consensus 141 t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea-~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~ 219 (269)
T PF05278_consen 141 TPLKELSESDLKEMIATLKDLESAKVKVDWLRSKLEEILEA-KEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQK 219 (269)
T ss_pred CcHhhhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666677777776666 555444555555555542211 11111222333344445555555556666666666666
Q ss_pred HHHHHHHHhhHHHHHhhhhhhhhchHHHHHHHHHHHH
Q 005601 144 KVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQ 180 (688)
Q Consensus 144 kaei~eLe~qLee~RkqLEVDlEN~EakLqqALqeLR 180 (688)
.+++.+++.++.++|..| .+++..-++|...+--++
T Consensus 220 Eke~~e~~~~i~e~~~rl-~~l~~~~~~l~k~~~~~~ 255 (269)
T PF05278_consen 220 EKEVKEIKERITEMKGRL-GELEMESTRLSKTIKSIK 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 666666666666665554 333333444444443333
No 397
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=74.15 E-value=41 Score=32.36 Aligned_cols=51 Identities=25% Similarity=0.316 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHhHHHHHHHHhhHHHHHh
Q 005601 109 SRISAEQKHEMEDLNDRLSASMQSC--TEANEIMKSQKVTIDELKTQLDEERN 159 (688)
Q Consensus 109 e~~~~~~Es~indLearLsaa~sdr--k~aeeelkelkaei~eLe~qLee~Rk 159 (688)
+..+..++..+..|.++|+...+.- ..|...+..++.++..|+..|..+|.
T Consensus 85 ~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 85 REELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333334444444444433332 34555666666666666666666555
No 398
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=74.07 E-value=1.4e+02 Score=32.56 Aligned_cols=14 Identities=29% Similarity=0.503 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHhhh
Q 005601 339 ARQQEQLKAMQKTL 352 (688)
Q Consensus 339 akqqeqlkaMQrTL 352 (688)
.|||..|+--+|-|
T Consensus 230 ~kqq~al~ks~R~~ 243 (301)
T PF06120_consen 230 DKQQQALEKSERDL 243 (301)
T ss_pred HHHHHHHHHHHHHH
Confidence 55666666555544
No 399
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=73.82 E-value=1e+02 Score=32.02 Aligned_cols=24 Identities=13% Similarity=0.362 Sum_probs=20.2
Q ss_pred hhhhhhhhhhhHHHHHhhhhhhhh
Q 005601 35 DDFRSLQRSNTELRKQLESQVLEI 58 (688)
Q Consensus 35 DRVR~LE~ENsrLr~QIe~~eeti 58 (688)
-|++.||.+=.+|.+....+-+.+
T Consensus 18 ~rf~~lE~~~~kL~Ke~K~Y~dav 41 (225)
T cd07590 18 QKLQQLESTTKKLYKDMKKYIEAV 41 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999999999988887777
No 400
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=73.47 E-value=98 Score=30.55 Aligned_cols=7 Identities=0% Similarity=0.012 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 005601 176 VQKSQLE 182 (688)
Q Consensus 176 LqeLR~Q 182 (688)
..+++.+
T Consensus 114 ~~~~~~~ 120 (181)
T PRK13454 114 LDVAIAK 120 (181)
T ss_pred HHHHHHH
Confidence 3333333
No 401
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=73.33 E-value=2e+02 Score=33.96 Aligned_cols=95 Identities=21% Similarity=0.093 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-------
Q 005601 202 QEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREE------- 274 (688)
Q Consensus 202 ~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~E------- 274 (688)
-..+.-+++.++..++.++.|-.- +-++-++-|.|+.-+..++++++--..++.+-+.||..||--
T Consensus 239 lsql~d~qkk~k~~~~Ekeel~~~-------Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs~~~p~~~s 311 (596)
T KOG4360|consen 239 LSQLVDLQKKIKYLRHEKEELDEH-------LQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRSCDAPKLIS 311 (596)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhH
Confidence 445666677777777766665443 455667888899999999999988888899999999998831
Q ss_pred -----------HHHHHHH-HHHHHHHHHhhhHhHHHHHhhh
Q 005601 275 -----------LESEKAA-REVAWAKVSGLELDILAATRDL 303 (688)
Q Consensus 275 -----------Me~QL~E-YQdLmDiKvaLDlEIaAYrKLL 303 (688)
+..-.++ ..-+|-++.+||-||++...+=
T Consensus 312 ~~~~~~~~~fp~~~~aae~i~lt~r~~~qldee~s~~~t~~ 352 (596)
T KOG4360|consen 312 QEALSHGHHFPQLSLAAEKIELTMRKNLQLDEEASQLDTLE 352 (596)
T ss_pred HHHHHhhhhCChhhHHHHHHHHhhhhhhccccccccCCccc
Confidence 1112344 4567888899999998887764
No 402
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=73.18 E-value=93 Score=30.15 Aligned_cols=32 Identities=13% Similarity=0.217 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 99 DAKQKELAEISRISAEQKHEMEDLNDRLSASM 130 (688)
Q Consensus 99 ~kKeKEL~~ae~~~~~~Es~indLearLsaa~ 130 (688)
++-.+.|..|+......+....+.+.+|..+.
T Consensus 53 ~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~ 84 (174)
T PRK07352 53 EAILQALKEAEERLRQAAQALAEAQQKLAQAQ 84 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444443
No 403
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=73.07 E-value=50 Score=35.95 Aligned_cols=52 Identities=17% Similarity=0.330 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh
Q 005601 90 QLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR 162 (688)
Q Consensus 90 EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE 162 (688)
|.++||..|..-+-++- |-.+|..+|.|+ +|+.+++|-.|+.=.+..|..|-
T Consensus 90 EI~eLksQL~RMrEDWI---------EEECHRVEAQLA------------LKEARkEIkQLkQvieTmrssL~ 141 (305)
T PF15290_consen 90 EIDELKSQLARMREDWI---------EEECHRVEAQLA------------LKEARKEIKQLKQVIETMRSSLA 141 (305)
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHhhhc
Confidence 44444444444444442 445666666553 56666666666666666666654
No 404
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=72.90 E-value=2.9e+02 Score=35.68 Aligned_cols=82 Identities=12% Similarity=0.137 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHH---HHhhhHhHHHHHhhhHHHHHHhhHhHhhHHHhhhhhhHhhccH-HHHHHHHHHHHHHHHHHH
Q 005601 274 ELESEKAAREVAWAK---VSGLELDILAATRDLDFERRRLKAARERIMLRETQLRAFYSTT-EEISVLFARQQEQLKAMQ 349 (688)
Q Consensus 274 EMe~QL~EYQdLmDi---KvaLDlEIaAYrKLLEgEE~RLkgareri~lretqlrafystt-eeis~lfakqqeqlkaMQ 349 (688)
.|+.++....+++++ ...+-....-..|.+...+++++--+.|.=..=|++..|.-|. ..|+.+|-+=+--++-|+
T Consensus 508 ~l~~~~kk~~~~~~~~~~~~~~~~~~~~~~k~~~~k~~~~~k~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~ 587 (1294)
T KOG0962|consen 508 QLEIQKKKLDEELDGLNKDAEKRAKLELLKKKLRKKDAELRKIKSRLSDEKGRAIEFPLTNDRSLEKELHKLSKEIQEME 587 (1294)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhhhhhhccCccchhHHHHHHHHHHHHHHHHH
Confidence 344555555555543 2222223333456677788888888888888889999999999 599999999888888888
Q ss_pred hhhccc
Q 005601 350 KTLEDE 355 (688)
Q Consensus 350 rTLeDe 355 (688)
.-+...
T Consensus 588 ek~~~l 593 (1294)
T KOG0962|consen 588 ERLRML 593 (1294)
T ss_pred HHHHHH
Confidence 766553
No 405
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=72.87 E-value=56 Score=36.88 Aligned_cols=130 Identities=18% Similarity=0.277 Sum_probs=42.9
Q ss_pred HHHHHHHHhhHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHhHHH-HHHHHHHHHHHHHHhHHHHH
Q 005601 144 KVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKR-LSDAASRRELEQ-QEVINKLQIAEKQSSLQVES 221 (688)
Q Consensus 144 kaei~eLe~qLee~RkqLEVDlEN~EakLqqALqeLR~Qa~ee~kr-~~Daq~r~nReE-~~~a~kaqEElke~R~RVEs 221 (688)
.+++..|+.+|..+|.--. ......+.++..+|.++. -+|. -.+.....+|-- ...-.++.++...+-.+|++
T Consensus 150 ~~Ev~~LRreLavLRQl~~----~~~~~~~~~i~~i~~ki~-~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdD 224 (424)
T PF03915_consen 150 LKEVQSLRRELAVLRQLYS----EFQSEVKESISSIREKIK-KVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVDD 224 (424)
T ss_dssp -------------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-HHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666664221 114556677777777732 1221 011111122222 22333444555555566666
Q ss_pred HHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 222 LKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWA 287 (688)
Q Consensus 222 L~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmD 287 (688)
|.--+++|+.-+ +..++|=...||..- .+.+.....+|..|..-|...+--+.-.|.
T Consensus 225 LQD~VE~LRkDV--~~RgvRp~~~qle~v-------~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE 281 (424)
T PF03915_consen 225 LQDLVEDLRKDV--VQRGVRPSPKQLETV-------AKDISRASKELKKMKEYIKTEKPIWKKIWE 281 (424)
T ss_dssp HHHHHHHHHHHH--HHH-----HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHcCCcCCHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 666666666553 346677666666543 455566666677766666666665555554
No 406
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=72.85 E-value=13 Score=42.53 Aligned_cols=50 Identities=12% Similarity=0.178 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHH
Q 005601 106 AEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLD 155 (688)
Q Consensus 106 ~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLe 155 (688)
...+.++.++|.+|..|..++....+.+.+++..|+.+..++..|+.|++
T Consensus 72 teqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 72 TEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443334444555555555555555555553
No 407
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=72.62 E-value=1.2e+02 Score=31.29 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=14.9
Q ss_pred HHHHHHhHHHHHHHhhhhHHHHHHHHHHH
Q 005601 219 VESLKLKLDETRERLVTSDNKVRLLETQV 247 (688)
Q Consensus 219 VEsL~sKL~dLe~~n~ale~RIReLE~qL 247 (688)
+..|..+-..++.++..+..+|+.|+.+.
T Consensus 156 a~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 156 AQALEAERRAAQAQLRQLQRQVRQLQRQA 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444555555555666666554
No 408
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=72.58 E-value=1.2e+02 Score=30.95 Aligned_cols=9 Identities=0% Similarity=0.545 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 005601 94 LRDMLDAKQ 102 (688)
Q Consensus 94 Lk~~L~kKe 102 (688)
+...|++.+
T Consensus 78 I~~vLe~R~ 86 (204)
T PRK09174 78 IGGIIETRR 86 (204)
T ss_pred HHHHHHHHH
Confidence 333333333
No 409
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=72.49 E-value=1.6e+02 Score=34.03 Aligned_cols=143 Identities=18% Similarity=0.149 Sum_probs=75.6
Q ss_pred hhhhhhhhhHHHHHhhhhhhhhhccchhhHHHHHhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 37 FRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESV-------SISYLHQLKVLRDMLDAKQKELAEIS 109 (688)
Q Consensus 37 VR~LE~ENsrLr~QIe~~eeti~tltrEvs~IK~~YEsEL~DARklL-------~kk~~~EleELk~~L~kKeKEL~~ae 109 (688)
...-|++-..|.+.|+.-++.. |-|..=|--.|+.|.+|-++- ....+.|++.|+-.|.+.+++|..-+
T Consensus 254 Lq~aEqsl~dlQk~Lekar~e~----rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~~L~kAEkele~nS 329 (575)
T KOG4403|consen 254 LQRAEQSLEDLQKRLEKAREEQ----RNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRVALEKAEKELEANS 329 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh----hchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445666677777776666554 334444555566666555543 33334599999999999999987532
Q ss_pred H-----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh-------hhhhchHHHHHHHHH
Q 005601 110 R-----ISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR-------VDRENAEADLKAAVQ 177 (688)
Q Consensus 110 ~-----~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE-------VDlEN~EakLqqALq 177 (688)
. .+...-..-++++-.| ....|..++.+++..+...++|+|--...=--+. -|..-.-..+++||-
T Consensus 330 ~wsaP~aLQ~wLq~T~E~E~q~--~~kkrqnaekql~~Ake~~eklkKKrssv~gtl~vahgsslDdVD~kIleak~al~ 407 (575)
T KOG4403|consen 330 SWSAPLALQKWLQLTHEVEVQY--YNKKRQNAEKQLKEAKEMAEKLKKKRSSVFGTLHVAHGSSLDDVDHKILEAKSALS 407 (575)
T ss_pred CCCCcHHHHHHHHHHHHHHHHH--HHHHhhhHHHHHHHHHHHHHHHHHhhcchheeeeeccccchhhHHHHHHHHHHHHH
Confidence 1 1112222334444433 3344566666666666555555443211111111 122222455566666
Q ss_pred HHHHHHHH
Q 005601 178 KSQLETQE 185 (688)
Q Consensus 178 eLR~Qa~e 185 (688)
++-...+|
T Consensus 408 evtt~lrE 415 (575)
T KOG4403|consen 408 EVTTLLRE 415 (575)
T ss_pred HHHHHHHH
Confidence 66655333
No 410
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=72.27 E-value=94 Score=33.80 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=20.7
Q ss_pred HHHHhHHHHHHHHhhHHHHHhhhh------hhhhchHHHHHHHHHHH
Q 005601 139 IMKSQKVTIDELKTQLDEERNLRR------VDRENAEADLKAAVQKS 179 (688)
Q Consensus 139 elkelkaei~eLe~qLee~RkqLE------VDlEN~EakLqqALqeL 179 (688)
.+...++++...+..++..++... .+++++.+.+.++-..+
T Consensus 128 ~l~~a~a~l~~a~~~~~R~~~L~~~g~iS~~~ld~a~~~~~~a~a~l 174 (390)
T PRK15136 128 NIELQKTALAQAQSDLNRRVPLGNANLIGREELQHARDAVASAQAQL 174 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555444444 56666665555544433
No 411
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=72.24 E-value=1.2e+02 Score=31.02 Aligned_cols=44 Identities=7% Similarity=0.154 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 86 SYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSAS 129 (688)
Q Consensus 86 k~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa 129 (688)
++-+|...|...+....+++..++.....++..+..++.++...
T Consensus 46 ~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L 89 (251)
T PF11932_consen 46 QWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASL 89 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444443333333333
No 412
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=71.95 E-value=88 Score=29.32 Aligned_cols=98 Identities=14% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHH
Q 005601 122 LNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQ 201 (688)
Q Consensus 122 LearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE 201 (688)
|+.|-..-......++.-.......+.+.+.+|..++.....=++.+...-....+.++.+|.+++++..+.....-..+
T Consensus 33 l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~~e 112 (156)
T PRK05759 33 LEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQE 112 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -HHHHHHHHHHHHHHhHHH
Q 005601 202 -QEVINKLQIAEKQSSLQV 219 (688)
Q Consensus 202 -~~~a~kaqEElke~R~RV 219 (688)
..+...++.+.-..-..+
T Consensus 113 ~~~a~~~l~~~~~~lA~~~ 131 (156)
T PRK05759 113 RKRAREELRKQVADLAVAG 131 (156)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 413
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=71.92 E-value=68 Score=30.83 Aligned_cols=65 Identities=9% Similarity=0.239 Sum_probs=40.9
Q ss_pred HHHHhhHHHHHHHHHHH---------------HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 67 VVVERHEKEMKEMKESV---------------SIS------YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDR 125 (688)
Q Consensus 67 ~IK~~YEsEL~DARklL---------------~kk------~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLear 125 (688)
--|..+|.+|+++.++| +|- .-.=.++|..+++..+..+.+.++.-..++.+|.+|.+.
T Consensus 27 ~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~ 106 (119)
T COG1382 27 LQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSE 106 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667888888888887 111 112235566666666666666666666666677666666
Q ss_pred HHHHHH
Q 005601 126 LSASMQ 131 (688)
Q Consensus 126 Lsaa~s 131 (688)
|..+++
T Consensus 107 i~~~l~ 112 (119)
T COG1382 107 IQKALG 112 (119)
T ss_pred HHHHhh
Confidence 666554
No 414
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=71.85 E-value=82 Score=34.15 Aligned_cols=152 Identities=22% Similarity=0.182 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHH
Q 005601 169 EADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVC 248 (688)
Q Consensus 169 EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~ 248 (688)
-..|+..|.++.+- |-.+|=.|-+-.|.-+.+. =+|+.|.-+|.+++..++.+...+++ ..-+
T Consensus 79 ~r~lk~~l~evEek--------yrkAMv~naQLDNek~~l~-------yqvd~Lkd~lee~eE~~~~~~re~~e--K~~e 141 (302)
T PF09738_consen 79 LRDLKDSLAEVEEK--------YRKAMVSNAQLDNEKSALM-------YQVDLLKDKLEELEETLAQLQREYRE--KIRE 141 (302)
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHhhhchHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 45667777777777 8888888877755544433 47888888888888888888888764 3333
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhh---HhH--------HHHHhhhHHHHHHhhHhH
Q 005601 249 KEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAK---VSGLE---LDI--------LAATRDLDFERRRLKAAR 314 (688)
Q Consensus 249 ~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDi---KvaLD---lEI--------aAYrKLLEgEE~RLkgar 314 (688)
.||.++ ....+..++..||+ +|.++.+|+.. ++.-| -|+ .+.+-+..-|...+=++-
T Consensus 142 lEr~K~-----~~d~L~~e~~~Lre----~L~~rdeli~khGlVlv~~~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~a 212 (302)
T PF09738_consen 142 LERQKR-----AHDSLREELDELRE----QLKQRDELIEKHGLVLVPDATNGDTSDEPNNVGHPKRALVSQEAAQLLESA 212 (302)
T ss_pred HHHHHH-----HHHHHHHHHHHHHH----HHHHHHHHHHHCCeeeCCCCCCCccccCccccCCCcccccchhhhhhhccc
Confidence 444444 33445555555554 44666666642 22222 011 123334444544333332
Q ss_pred hhHHHhhhhhhHhhccHHHHHHHHHHHHHHHHH
Q 005601 315 ERIMLRETQLRAFYSTTEEISVLFARQQEQLKA 347 (688)
Q Consensus 315 eri~lretqlrafystteeis~lfakqqeqlka 347 (688)
---.| ...||-|-..-+++-.-.-|=+.||..
T Consensus 213 G~g~L-DvRLkKl~~eke~L~~qv~klk~qLee 244 (302)
T PF09738_consen 213 GDGSL-DVRLKKLADEKEELLEQVRKLKLQLEE 244 (302)
T ss_pred CCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333 456888888888887777777777754
No 415
>PRK12705 hypothetical protein; Provisional
Probab=71.55 E-value=2e+02 Score=33.34 Aligned_cols=88 Identities=17% Similarity=0.165 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 202 QEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAA 281 (688)
Q Consensus 202 ~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~E 281 (688)
+++.-.++++....|..++ ..+...+..+...++|+...|.+|......-......+..++..|....++++...++
T Consensus 51 ~~~~~~~~~~~~~~~~~~e---~e~~~~~~~~~~~e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~ 127 (508)
T PRK12705 51 EAALLEAKELLLRERNQQR---QEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQ 127 (508)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555544 5555556666666667766666665444444333334444444444444444444333
Q ss_pred HHHHHHHHHhh
Q 005601 282 REVAWAKVSGL 292 (688)
Q Consensus 282 YQdLmDiKvaL 292 (688)
...-|-..+.|
T Consensus 128 ~~~~Le~ia~l 138 (508)
T PRK12705 128 LDNELYRVAGL 138 (508)
T ss_pred HHHHHHHHhCC
Confidence 33333333333
No 416
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=71.53 E-value=1.1e+02 Score=30.51 Aligned_cols=67 Identities=13% Similarity=0.180 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHH-HHHHHhhHHHHHhhhhhhhhc
Q 005601 94 LRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVT-IDELKTQLDEERNLRRVDREN 167 (688)
Q Consensus 94 Lk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkae-i~eLe~qLee~RkqLEVDlEN 167 (688)
|..+-++-..++..|+....+.+....+.++.|..|.. +...++.+ .++|.......|+.++.+|-|
T Consensus 39 Le~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~-------eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~ 106 (155)
T PRK06569 39 FNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNT-------EIDRLKKEKIDSLESEFLIKKKNLEQDLKN 106 (155)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666777776666666666666666665555 34444444 566666677777777655543
No 417
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=71.49 E-value=29 Score=40.12 Aligned_cols=19 Identities=26% Similarity=0.786 Sum_probs=10.8
Q ss_pred cccccccCCCCCC----cchhhh
Q 005601 19 RLKGIGICSPDGP----LSLDDF 37 (688)
Q Consensus 19 r~kglgig~~~gp----islDRV 37 (688)
.+.||.|+-|++| ++++++
T Consensus 60 ~i~gl~Vanp~~~~~~~~~i~~i 82 (555)
T TIGR03545 60 SIQGLQVTDPDKPMRNLFEIDRI 82 (555)
T ss_pred EEeeEEEeCCCCCCCCeEEeeEE
Confidence 4556666666655 455544
No 418
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=71.44 E-value=1e+02 Score=29.99 Aligned_cols=35 Identities=26% Similarity=0.309 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 97 MLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQ 131 (688)
Q Consensus 97 ~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~s 131 (688)
+-++-..++..++....+.+....+.+..|..+..
T Consensus 54 R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~ 88 (167)
T PRK08475 54 RINKISKRLEEIQEKLKESKEKKEDALKKLEEAKE 88 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555554443
No 419
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=71.36 E-value=57 Score=32.72 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHhHHHHHHHHhhHH
Q 005601 132 SCTEANEIMKSQKVTIDELKTQLD 155 (688)
Q Consensus 132 drk~aeeelkelkaei~eLe~qLe 155 (688)
.|..+-..+..+++++.+|+.+|+
T Consensus 104 eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 104 EREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444443
No 420
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.29 E-value=2.3e+02 Score=33.77 Aligned_cols=230 Identities=16% Similarity=0.185 Sum_probs=111.3
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhH
Q 005601 77 KEMKESV--SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQL 154 (688)
Q Consensus 77 ~DARklL--~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qL 154 (688)
-|-|+.+ +..|.-++..|+-+++-.+.++..++....+|+.-+..|-+-.---.+..+.++=-+-..+-++.+++.||
T Consensus 324 rderE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qL 403 (654)
T KOG4809|consen 324 RDERERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQL 403 (654)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 66677777777777777766666666555555544444443333333334444444445555566666666
Q ss_pred HHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhh
Q 005601 155 DEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLV 234 (688)
Q Consensus 155 ee~RkqLEVDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ 234 (688)
-.+.+.+-.-+-|-++ .+++.+ -|-....||.+..-+.+.-.++=++-.. -++.-.
T Consensus 404 kkAh~~~ddar~~pe~------~d~i~~--------le~e~~~y~de~~kaqaevdrlLeilke----------veneKn 459 (654)
T KOG4809|consen 404 KKAHNIEDDARMNPEF------ADQIKQ--------LEKEASYYRDECGKAQAEVDRLLEILKE----------VENEKN 459 (654)
T ss_pred HHHHHhhHhhhcChhh------HHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHhhhc
Confidence 6665554422222221 122222 3444444555433333333333222222 233333
Q ss_pred hhHHHHHHHHHHHHHHHhhhhHH-H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHh---hhH
Q 005601 235 TSDNKVRLLETQVCKEQNVSASW-K------KRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATR---DLD 304 (688)
Q Consensus 235 ale~RIReLE~qL~~Er~~s~~~-~------k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYrK---LLE 304 (688)
.-..||-+||.++-.---.-+|+ + ++.+.+=.++++=++-|..+-+-.| .+-+|.|.+| -|+
T Consensus 460 Dkdkkiaeler~~kdqnkkvaNlkHk~q~Ekkk~aq~lee~rrred~~~d~sqhlq--------~eel~~alektkQel~ 531 (654)
T KOG4809|consen 460 DKDKKIAELERHMKDQNKKVANLKHKQQLEKKKNAQLLEEVRRREDSMADNSQHLQ--------IEELMNALEKTKQELD 531 (654)
T ss_pred cccchhhhcCchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHH--------HHHHHHHHHHHhhChh
Confidence 34455555554432111111111 1 1222222345555555544333333 3444555444 466
Q ss_pred HHHHHhhHhHhhHHHhhhhhhHhhccHHHHHHHHHHHHHHHHHH
Q 005601 305 FERRRLKAARERIMLRETQLRAFYSTTEEISVLFARQQEQLKAM 348 (688)
Q Consensus 305 gEE~RLkgareri~lretqlrafystteeis~lfakqqeqlkaM 348 (688)
.=..||.-.|.-+-=||+-| -.||+--|+||-+.
T Consensus 532 ~tkarl~stqqslaEke~HL----------~nLr~errk~Lee~ 565 (654)
T KOG4809|consen 532 ATKARLASTQQSLAEKEAHL----------ANLRIERRKQLEEI 565 (654)
T ss_pred hhhhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 66677777666665566654 46788778877653
No 421
>PRK04406 hypothetical protein; Provisional
Probab=71.19 E-value=27 Score=30.64 Aligned_cols=50 Identities=10% Similarity=0.327 Sum_probs=28.9
Q ss_pred HHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 005601 219 VESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREEL 275 (688)
Q Consensus 219 VEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EM 275 (688)
++.+..+|.+|+.++++.++-|.+|=..+..- .+.++.+.++|+.|.+.+
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Q-------q~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQ-------QLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777665444332 334455555555555444
No 422
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.15 E-value=1.9e+02 Score=33.70 Aligned_cols=94 Identities=16% Similarity=0.078 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhh
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRV 163 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEV 163 (688)
++.++.-++.+..++..++|....+-.++..++++..+|+-|+=..+--..-+..-=-.|...=++|+.+|+.+-.++.-
T Consensus 350 ~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~Lr~Kldtll~~ln~ 429 (508)
T KOG3091|consen 350 VKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEELRAKLDTLLAQLNA 429 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHHHHHHHHHHHHhcC
Confidence 66677777777777777778888888888888888888888876554422222111113455556777777777777762
Q ss_pred hhhchHHHHHHHHHHHHHH
Q 005601 164 DRENAEADLKAAVQKSQLE 182 (688)
Q Consensus 164 DlEN~EakLqqALqeLR~Q 182 (688)
= +.|+.-|..|-++
T Consensus 430 P-----nq~k~Rl~~L~e~ 443 (508)
T KOG3091|consen 430 P-----NQLKARLDELYEI 443 (508)
T ss_pred h-----HHHHHHHHHHHHH
Confidence 1 4444444444444
No 423
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=70.95 E-value=87 Score=28.88 Aligned_cols=36 Identities=17% Similarity=0.134 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 96 DMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQ 131 (688)
Q Consensus 96 ~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~s 131 (688)
.+-++-...+..|+....+.+....+.+.+|..+..
T Consensus 36 ~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ 71 (140)
T PRK07353 36 EREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARK 71 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666666666666666666665554
No 424
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=70.87 E-value=80 Score=28.42 Aligned_cols=59 Identities=24% Similarity=0.287 Sum_probs=27.3
Q ss_pred HHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005601 218 QVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELE 276 (688)
Q Consensus 218 RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe 276 (688)
..+.+...+.........++.++-.|+.-...+...+..+.+....+..|++.|+..+.
T Consensus 11 a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~ 69 (96)
T PF08647_consen 11 AFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLS 69 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444455555554444443
No 425
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=70.81 E-value=17 Score=38.87 Aligned_cols=66 Identities=15% Similarity=0.187 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHH
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDE 149 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~e 149 (688)
++-++..++++...|.+.+..|...+..+..++..+..|...|..+.+.+..++.++......+..
T Consensus 216 V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~r 281 (344)
T PF12777_consen 216 VEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLER 281 (344)
T ss_dssp CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 344556777777777777777777777777777777777777777777776666666655554443
No 426
>PRK12705 hypothetical protein; Provisional
Probab=70.74 E-value=2.1e+02 Score=33.21 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=9.1
Q ss_pred cchh-hhhhhhhhhhh
Q 005601 522 TMED-TIRTADLLASE 536 (688)
Q Consensus 522 ~~ed-~irt~dllase 536 (688)
+++. ++..||-|++-
T Consensus 402 ~~~a~IVaiADaLSaa 417 (508)
T PRK12705 402 TVYSVLVQIADALSAA 417 (508)
T ss_pred CHHHHHHHHHHHHcCC
Confidence 3344 77788866554
No 427
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=70.57 E-value=46 Score=34.70 Aligned_cols=54 Identities=22% Similarity=0.288 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005601 86 SYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEI 139 (688)
Q Consensus 86 k~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeee 139 (688)
+..++++-|+..+.+++++|..+++.+..+..++.+++.+|..++.+-.++.+.
T Consensus 155 ~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 155 KLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 344555555556666666666666666666666666666665555544444443
No 428
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=70.48 E-value=1.6e+02 Score=33.75 Aligned_cols=85 Identities=14% Similarity=0.075 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHH----hhhh--hhhhchHHH
Q 005601 98 LDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEER----NLRR--VDRENAEAD 171 (688)
Q Consensus 98 L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~R----kqLE--VDlEN~Eak 171 (688)
+.+...+|.+-++..-.+-++.--+.+.+-+..+-....|-+|.+|+.+...|...+-.++ ...+ ...+|-++.
T Consensus 15 ~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r 94 (459)
T KOG0288|consen 15 LIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENLRIR 94 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333344444444444444444444444444433332221111 0011 445555666
Q ss_pred HHHHHHHHHHH
Q 005601 172 LKAAVQKSQLE 182 (688)
Q Consensus 172 LqqALqeLR~Q 182 (688)
+..-+.++|.|
T Consensus 95 ~~~eir~~~~q 105 (459)
T KOG0288|consen 95 SLNEIRELREQ 105 (459)
T ss_pred HHHHHHHHHHh
Confidence 66666666666
No 429
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=70.00 E-value=50 Score=38.17 Aligned_cols=90 Identities=18% Similarity=0.230 Sum_probs=73.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhhHHHHHHhhHhH
Q 005601 235 TSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAAR 314 (688)
Q Consensus 235 ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYrKLLEgEE~RLkgar 314 (688)
.+..|+++||.....++.+-..+.+-+...-.+|.++++=|..+...-+.-.+-.-.|+-=+.+|.+++..|..+|+.-+
T Consensus 88 ~l~~Kl~eLE~e~k~d~v~~khn~~I~~k~g~~L~~v~~~~~~~~~~~~~e~~q~~~LekAl~~~~~i~~~E~~~l~~L~ 167 (508)
T PF00901_consen 88 GLQRKLKELEDEQKEDEVREKHNKKIIEKFGNDLEKVYKFMKGQEKVEEEEENQIEILEKALKSYGKIVKEENKQLDRLA 167 (508)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35578999999888887777667888888889999999999998887777777777888889999999999999888754
Q ss_pred hhHHHhhhhhh
Q 005601 315 ERIMLRETQLR 325 (688)
Q Consensus 315 eri~lretqlr 325 (688)
|-+.||..+|
T Consensus 168 -~AL~kE~~~R 177 (508)
T PF00901_consen 168 -RALQKESRER 177 (508)
T ss_pred -HHHHHHHHhc
Confidence 3345666666
No 430
>PF14992 TMCO5: TMCO5 family
Probab=69.78 E-value=91 Score=33.75 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=25.2
Q ss_pred hhhhhhhHHHHHhhhhhhhhhccchhhHHHHH
Q 005601 39 SLQRSNTELRKQLESQVLEIDKLRNENRVVVE 70 (688)
Q Consensus 39 ~LE~ENsrLr~QIe~~eeti~tltrEvs~IK~ 70 (688)
.|--.|..|-..|++.+.++-.|-||++-..-
T Consensus 15 ~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~ 46 (280)
T PF14992_consen 15 RLDEANQSLLQKIQEKEGAIQSLEREITKMDH 46 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45567999999999999999777777765544
No 431
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=69.71 E-value=1.9e+02 Score=32.35 Aligned_cols=207 Identities=17% Similarity=0.187 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh-----hhhhch--HHHHHHHHHHHHHHHH
Q 005601 112 SAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR-----VDRENA--EADLKAAVQKSQLETQ 184 (688)
Q Consensus 112 ~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE-----VDlEN~--EakLqqALqeLR~Qa~ 184 (688)
+..+.+.+++.+..|..-.+...++.+.+..+...+-+|-.|+..--++++ ++++.. .++|+.--..... +
T Consensus 111 ~~~fqvtL~diqktla~~~~~n~klre~NieL~eKlkeL~eQy~~re~hidk~~e~kel~~ql~~aKlq~~~~l~a~--~ 188 (391)
T KOG1850|consen 111 VEQFQVTLKDIQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEEREKHIDKQIQKKELWEQLGKAKLQEIKLLTAK--L 188 (391)
T ss_pred HHHHHhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--H
Confidence 456788899999999998888899999999999999999999887777776 334333 2222211111000 1
Q ss_pred HHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 005601 185 EKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEEL 264 (688)
Q Consensus 185 ee~kr~~Daq~r~nReE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~l 264 (688)
++ +-.+.++- ..|....++.-|+++.-.=.-|..+++-+-++..++-.-|+.=-..|......+...
T Consensus 189 ee------~~~~e~~~-------glEKd~lak~~~e~~~~~e~qlK~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~ekm 255 (391)
T KOG1850|consen 189 EE------ASIQEKKS-------GLEKDELAKIMLEEMKQVEGQLKEQLALYMAKYEEFQTTLAKSNELFTKFKQEMEKM 255 (391)
T ss_pred HH------HHHHHHHh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 11 11111111 112222233333333333334444555666777777777766666665556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhhHHHHHHhhHhHhhHHHhhhhhhHhhccHHHHHHHHHHHHHH
Q 005601 265 ENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARERIMLRETQLRAFYSTTEEISVLFARQQEQ 344 (688)
Q Consensus 265 E~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYrKLLEgEE~RLkgareri~lretqlrafystteeis~lfakqqeq 344 (688)
-..|.+|-+|+-.=.+-|+.+=..++.|-+| -++|+ ++| .-|.++-++
T Consensus 256 tKk~kklEKE~l~wr~K~e~aNk~vL~la~e--------------------------kt~~~-----k~~-~~lq~kiq~ 303 (391)
T KOG1850|consen 256 TKKIKKLEKETLIWRTKWENANKAVLQLAEE--------------------------KTVRD-----KEY-ETLQKKIQR 303 (391)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH--------------------------hHHHH-----HHH-HHHHHHHHH
Confidence 6666666666655555555544444444333 33332 222 346777888
Q ss_pred HHHHHhhhcccccccCccccc
Q 005601 345 LKAMQKTLEDEENYENTSVDI 365 (688)
Q Consensus 345 lkaMQrTLeDeeNyent~~~~ 365 (688)
|.-+=|.|.-+.|--|+-+.+
T Consensus 304 LekLcRALq~ernel~~~~~~ 324 (391)
T KOG1850|consen 304 LEKLCRALQTERNELNKKLED 324 (391)
T ss_pred HHHHHHHHHhccccHHHHHHH
Confidence 999999999999877766653
No 432
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=69.58 E-value=1.1e+02 Score=35.66 Aligned_cols=48 Identities=21% Similarity=0.353 Sum_probs=0.0
Q ss_pred CCCcc-hhhhhhhhhhhhHHHHHhhhhhhhhhccchhhHHHHHhhHHHH
Q 005601 29 DGPLS-LDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEM 76 (688)
Q Consensus 29 ~gpis-lDRVR~LE~ENsrLr~QIe~~eeti~tltrEvs~IK~~YEsEL 76 (688)
.++++ ++++..|......|..+.......+..|..++..+-..-+-..
T Consensus 135 ~~~l~S~~~l~~l~~~l~~L~~e~~~R~~~v~~l~~~I~~l~~~L~~~~ 183 (619)
T PF03999_consen 135 ESDLPSLEELEELRQHLQRLQEEKERRLEEVRELREEIISLMEELGIDP 183 (619)
T ss_dssp -------------------------------------------------
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 46666 8999999999999999999988888777777776655544444
No 433
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=69.55 E-value=1.3e+02 Score=30.52 Aligned_cols=47 Identities=13% Similarity=0.291 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHH
Q 005601 98 LDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTI 147 (688)
Q Consensus 98 L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei 147 (688)
-++-.+.+..|+....+.+....+.+.+|..+.. ++.+.+...+.+.
T Consensus 81 ~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~---eA~~Ii~~A~~eA 127 (205)
T PRK06231 81 KELIEAEINQANELKQQAQQLLENAKQRHENALA---QAKEIIDQANYEA 127 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3344455555555555555555555555555543 3334444444333
No 434
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=69.46 E-value=8.7 Score=41.93 Aligned_cols=35 Identities=11% Similarity=0.203 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHH
Q 005601 205 INKLQIAEKQSSLQVESLKLKLDETRERLVTSDNK 239 (688)
Q Consensus 205 a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~R 239 (688)
++.+.-++-.++.-|-++-..|.+|++++.++|..
T Consensus 121 v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~ 155 (326)
T PF04582_consen 121 VSALSTDVSNLKSDVSTQALNITDLESRVKALESG 155 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcC
Confidence 44444455556666666666677777776666643
No 435
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=69.44 E-value=1.2e+02 Score=31.30 Aligned_cols=78 Identities=15% Similarity=0.179 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhchHHHHHHHH
Q 005601 97 MLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAV 176 (688)
Q Consensus 97 ~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~EakLqqAL 176 (688)
+-.+++.+-..+++.+...+.+++.|++-|.-+.+........-+..+.+...|+.+-..++.||+ +|+..+
T Consensus 106 rR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~--------~lQ~qv 177 (192)
T PF11180_consen 106 RRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLR--------QLQRQV 177 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH
Confidence 334445555566677777777777777777777777777777777777777777777777777764 567777
Q ss_pred HHHHHH
Q 005601 177 QKSQLE 182 (688)
Q Consensus 177 qeLR~Q 182 (688)
+.|..+
T Consensus 178 ~~Lq~q 183 (192)
T PF11180_consen 178 RQLQRQ 183 (192)
T ss_pred HHHHHH
Confidence 777666
No 436
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=69.30 E-value=55 Score=31.99 Aligned_cols=8 Identities=25% Similarity=0.522 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 005601 240 VRLLETQV 247 (688)
Q Consensus 240 IReLE~qL 247 (688)
+.-|+.||
T Consensus 118 ~~Gldeqi 125 (155)
T PF06810_consen 118 LKGLDEQI 125 (155)
T ss_pred cccHHHHH
Confidence 33333333
No 437
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=69.05 E-value=57 Score=37.03 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHHHhHHHH
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEISRI---------SAEQKHEMEDLNDRLSASMQSCTEANE-------IMKSQKVTI 147 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~ae~~---------~~~~Es~indLearLsaa~sdrk~aee-------elkelkaei 147 (688)
++-...|++....+|.+....|..-+.+ +..+-..++.|+..|..+......+.. .+..++.+|
T Consensus 244 v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI 323 (434)
T PRK15178 244 ILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKI 323 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHH
Confidence 4444445555555555555544443322 122223444445544444444444422 455666666
Q ss_pred HHHHhhHHHHHhhh
Q 005601 148 DELKTQLDEERNLR 161 (688)
Q Consensus 148 ~eLe~qLee~RkqL 161 (688)
+-|++|++.+|..+
T Consensus 324 ~aLe~QIa~er~kl 337 (434)
T PRK15178 324 KVLEKQIGEQRNRL 337 (434)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666665555
No 438
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=68.89 E-value=70 Score=29.11 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=9.0
Q ss_pred HHHHHhHHHHHHHhhhhHHHHHHHH
Q 005601 220 ESLKLKLDETRERLVTSDNKVRLLE 244 (688)
Q Consensus 220 EsL~sKL~dLe~~n~ale~RIReLE 244 (688)
+.+...|..++++...+..++.+++
T Consensus 77 e~ie~~i~~lek~~~~l~~~l~e~q 101 (110)
T TIGR02338 77 ETLELRVKTLQRQEERLREQLKELQ 101 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 439
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=68.86 E-value=71 Score=32.06 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q 005601 111 ISAEQKHEMEDLNDRLSASMQSC 133 (688)
Q Consensus 111 ~~~~~Es~indLearLsaa~sdr 133 (688)
.+..++..+.+|..+|..+...|
T Consensus 77 ~~~~~~~~i~~l~~~i~~~~~~r 99 (188)
T PF03962_consen 77 EIEELEKKIEELEEKIEEAKKGR 99 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 33334444444444444444433
No 440
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=68.83 E-value=1.2e+02 Score=29.51 Aligned_cols=31 Identities=10% Similarity=0.061 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHhHHH
Q 005601 171 DLKAAVQKSQLETQEKLKRLSDAASRRELEQ 201 (688)
Q Consensus 171 kLqqALqeLR~Qa~ee~kr~~Daq~r~nReE 201 (688)
+.+.-...+..+|+.+|.+.-...++..|.+
T Consensus 107 ~A~~ea~~~~~~a~~~I~~e~~~a~~~l~~~ 137 (175)
T PRK14472 107 KAHTEAKKMIASAKEEIEQEKRRALDVLRNE 137 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444
No 441
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=68.64 E-value=61 Score=31.68 Aligned_cols=62 Identities=23% Similarity=0.356 Sum_probs=36.9
Q ss_pred HHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 214 QSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAW 286 (688)
Q Consensus 214 e~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLm 286 (688)
..+.+++.+..++..+..++...++.|..|... ....+.|..+|..|+.+......+|+.-+
T Consensus 17 ~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~-----------~~d~eeLk~~i~~lq~~~~~~~~~~e~~l 78 (155)
T PF06810_consen 17 APKAKVDKVKEERDNLKTQLKEADKQIKDLKKS-----------AKDNEELKKQIEELQAKNKTAKEEYEAKL 78 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------cCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666677777777777777777776652 23344555555555555555555555443
No 442
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=68.39 E-value=1.3e+02 Score=29.76 Aligned_cols=40 Identities=8% Similarity=0.084 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005601 95 RDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCT 134 (688)
Q Consensus 95 k~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk 134 (688)
..+-+.-..+|..|++...+.+....+-+..|..|.....
T Consensus 34 eeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~ 73 (154)
T PRK06568 34 DAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRS 73 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566667777777766666666666665554433
No 443
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=67.96 E-value=29 Score=37.28 Aligned_cols=91 Identities=12% Similarity=0.103 Sum_probs=68.2
Q ss_pred HHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 213 KQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSA----SWKKRVEELENEIKKLREELESEKAAREVAWAK 288 (688)
Q Consensus 213 ke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~----~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDi 288 (688)
..+-..+..|.++++..++.-....--+--|+-.|-.+-.... -.++.+.+..+.+-+..--|.-+|.+||.++.+
T Consensus 186 d~~~kel~elf~~v~e~rk~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~ 265 (284)
T KOG4642|consen 186 DHTTKELSELFSKVDEKRKKREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNL 265 (284)
T ss_pred HHHHHHHHHHHHHHHHHhccccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccch
Confidence 3444566777777777777766666555555555544433332 247788888888888888999999999999999
Q ss_pred HHhhhHhHHHHHhhhHH
Q 005601 289 VSGLELDILAATRDLDF 305 (688)
Q Consensus 289 KvaLDlEIaAYrKLLEg 305 (688)
+++++ |+||++++++
T Consensus 266 alkev--Ia~fl~~n~w 280 (284)
T KOG4642|consen 266 ALKEV--IAAFLKENEW 280 (284)
T ss_pred HHHHH--HHHHHHhccc
Confidence 99999 9999999875
No 444
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=67.89 E-value=14 Score=40.17 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 68 VVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELA 106 (688)
Q Consensus 68 IK~~YEsEL~DARklL~kk~~~EleELk~~L~kKeKEL~ 106 (688)
+++.|=--|.|.|+-.-..++++.+.-.+.+.+..|++.
T Consensus 41 ~~~~~~~~~E~~Kk~~~~qLrE~~et~~KE~~~~eKe~k 79 (370)
T PF02994_consen 41 LKSYLIMMLEDFKKDFKNQLREQDETPEKELKNKEKELK 79 (370)
T ss_dssp ---------------------------------------
T ss_pred cchHHHHHHHHhhhhhHHHHHHhhhhhhhhhhhhhhhhh
Confidence 344444456666665555555555544444444444443
No 445
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=67.47 E-value=59 Score=33.93 Aligned_cols=41 Identities=5% Similarity=0.151 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh
Q 005601 122 LNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR 162 (688)
Q Consensus 122 LearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE 162 (688)
|+++......+..+|++++.+....+..+.++-..++||.+
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e 189 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSE 189 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888888888888888888888888888887
No 446
>PLN02939 transferase, transferring glycosyl groups
Probab=67.45 E-value=3.3e+02 Score=34.21 Aligned_cols=113 Identities=17% Similarity=0.272 Sum_probs=65.0
Q ss_pred HHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhh--------hHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 005601 218 QVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVS--------ASWKKRVEELENEIKKLREELES---EKAAREVAW 286 (688)
Q Consensus 218 RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s--------~~~~k~l~~lE~Ei~rLR~EMe~---QL~EYQdLm 286 (688)
.|..-...+-.|++.-+.|+.-+|+||..+..-+... ..|-.+++.|+.=|.++-.+.++ -|+.+|+|-
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (977)
T PLN02939 251 EVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQDLR 330 (977)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence 3333444445566666677777777777764443322 23566777777777666655544 367888888
Q ss_pred HHHHhhhHhH---HHHHh---hhHHHHHHhhHhHhhHHHhhhhhhHhhcc
Q 005601 287 AKVSGLELDI---LAATR---DLDFERRRLKAARERIMLRETQLRAFYST 330 (688)
Q Consensus 287 DiKvaLDlEI---aAYrK---LLEgEE~RLkgareri~lretqlrafyst 330 (688)
+++-.|+-=+ ++|.- .++.=-++++-.+||+--+-.++-++...
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (977)
T PLN02939 331 DKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEIHSYIQL 380 (977)
T ss_pred HHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 8887776433 33321 11222356666666666555555554443
No 447
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=67.36 E-value=1.2e+02 Score=29.25 Aligned_cols=38 Identities=21% Similarity=0.258 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 94 LRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQ 131 (688)
Q Consensus 94 Lk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~s 131 (688)
|..+-++-..+|..|+....+.+....+-+.+|+.+..
T Consensus 39 le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ 76 (167)
T PRK14475 39 LDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAER 76 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555665555555555555555555544
No 448
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=67.18 E-value=3.3e+02 Score=34.02 Aligned_cols=244 Identities=15% Similarity=0.078 Sum_probs=121.1
Q ss_pred hhhhhhHHHHHhhhhhhhhhccch---hhHHHHHhhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 40 LQRSNTELRKQLESQVLEIDKLRN---ENRVVVERHEKEMKEMKESV------SISYLHQLKVLRDMLDAKQKELAEISR 110 (688)
Q Consensus 40 LE~ENsrLr~QIe~~eeti~tltr---Evs~IK~~YEsEL~DARklL------~kk~~~EleELk~~L~kKeKEL~~ae~ 110 (688)
|..+-+.|.++|...+..+..+.+ +.+-|+..||+.+..+=.-+ -.+++.|+..+.. ...+--..-..
T Consensus 472 ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~---~~~kl~eer~q 548 (913)
T KOG0244|consen 472 LSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESERSRLRNELNVFNR---LAAKLGEERVQ 548 (913)
T ss_pred hhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccccHHHHHHHHhhhH---HHHHhhhHHHH
Confidence 778888899999888888866664 77889999998776654444 3444444444444 11122222334
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHhHHHHHHHHhhH-HHHHhhhhhhhhchHHHHHHHHHHHHHHHH--
Q 005601 111 ISAEQKHEMEDLNDRLSASM---QSCTEANEIMKSQKVTIDELKTQL-DEERNLRRVDRENAEADLKAAVQKSQLETQ-- 184 (688)
Q Consensus 111 ~~~~~Es~indLearLsaa~---sdrk~aeeelkelkaei~eLe~qL-ee~RkqLEVDlEN~EakLqqALqeLR~Qa~-- 184 (688)
++.++|..+..|...+++-. ..+..-+++.+-++-+|..++.|- +..| +..+.++.=.+.-....++=+|
T Consensus 549 klk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~k~~kv~l~~----~~~~d~ekfr~~K~~~~Ke~~qlk 624 (913)
T KOG0244|consen 549 KLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHIAKGQKVQLLR----VMKEDAEKFRQWKDRTEKEWNQLK 624 (913)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH----HHhhhHHHHHHHHHHHHHHHHHHh
Confidence 56666777777766665432 233344455555555555555443 2222 2222221111111111111111
Q ss_pred -HHhhhhhHH--HHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHh----------HHHH---HHH-hhhhHHHHHHHHHHH
Q 005601 185 -EKLKRLSDA--ASRRELEQQEVINKLQIAEKQSSLQVESLKLK----------LDET---RER-LVTSDNKVRLLETQV 247 (688)
Q Consensus 185 -ee~kr~~Da--q~r~nReE~~~a~kaqEElke~R~RVEsL~sK----------L~dL---e~~-n~ale~RIReLE~qL 247 (688)
++.|++|+- +....+.+..+.-.--+|.-.++-|+..|..+ +.+. .+. .....+.|.-+.. +
T Consensus 625 ~~~rk~~~~~~~~~~l~~~q~~vl~~kt~eas~~~krlk~a~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~e~ei~~~-~ 703 (913)
T KOG0244|consen 625 GQERKSEGEHPKLEVLVKKQNYVLQRKTEEASAANKRLKEALCIRALTSSGQVTLGDNGASTSRTVAWPSNEIEINQI-A 703 (913)
T ss_pred ccchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhcCchhHHHHHHhccchHHHHH-H
Confidence 123333332 23334444333333333433334443333221 1111 111 1122222322222 2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005601 248 CKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSG 291 (688)
Q Consensus 248 ~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKva 291 (688)
.+-+-.+.-+....+.+-.++.++|.+...++.-.+..|+.-+.
T Consensus 704 ~~~~~~l~~~~~~ra~~~~d~~~~r~~~~k~l~~L~~~~~~~~~ 747 (913)
T KOG0244|consen 704 LNPRGTLLYAAEERAVRMWDLKRLRSEGKKLLGSLEPVMELTSD 747 (913)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 23333333345666777889999999998888888888876554
No 449
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=67.05 E-value=16 Score=34.72 Aligned_cols=44 Identities=9% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 005601 211 AEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVS 254 (688)
Q Consensus 211 Elke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s 254 (688)
|-.+++.||--|.+....++.-+..|-.||+-||-.|..||..+
T Consensus 26 ERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~ 69 (134)
T PF08232_consen 26 ERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKY 69 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 450
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=66.98 E-value=14 Score=31.68 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005601 236 SDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELE 276 (688)
Q Consensus 236 le~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe 276 (688)
+++||+.||..+.+-+..| ...+..|-.||.+|+.+..
T Consensus 1 l~~qv~s~e~~i~FLq~eH---~~tL~~LH~EIe~Lq~~~~ 38 (60)
T PF14916_consen 1 LEQQVQSLEKSILFLQQEH---AQTLKGLHAEIERLQKRNK 38 (60)
T ss_pred ChHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcc
Confidence 4789999999999999999 9999999999999998753
No 451
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=66.92 E-value=37 Score=32.05 Aligned_cols=36 Identities=17% Similarity=0.306 Sum_probs=27.9
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 76 MKEMKESV--SISYLHQLKVLRDMLDAKQKELAEISRI 111 (688)
Q Consensus 76 L~DARklL--~kk~~~EleELk~~L~kKeKEL~~ae~~ 111 (688)
|.+||++| ++....++.+++..+..+..+|......
T Consensus 5 l~EA~~lLP~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 42 (120)
T PF09969_consen 5 LEEANALLPLLRPILEEIRELKAELEELEERLQELEDS 42 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 57888888 8888888888888888877777665554
No 452
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=66.81 E-value=1.2e+02 Score=29.04 Aligned_cols=31 Identities=16% Similarity=0.310 Sum_probs=19.5
Q ss_pred HHHhHHHHHHHHhHHHHHHHhhhhHHHHHHH
Q 005601 213 KQSSLQVESLKLKLDETRERLVTSDNKVRLL 243 (688)
Q Consensus 213 ke~R~RVEsL~sKL~dLe~~n~ale~RIReL 243 (688)
+.++.-++.|--=|.++..++..+-.|+++|
T Consensus 80 ~~~q~EldDLL~ll~Dle~K~~kyk~rLk~L 110 (136)
T PF04871_consen 80 KEAQSELDDLLVLLGDLEEKRKKYKERLKEL 110 (136)
T ss_pred HhhhhhHHHHHHHHHhHHHHHHHHHHHHHHc
Confidence 4455566666666666666666666666654
No 453
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=66.80 E-value=29 Score=35.43 Aligned_cols=69 Identities=16% Similarity=0.182 Sum_probs=53.9
Q ss_pred HHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 214 QSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWA 287 (688)
Q Consensus 214 e~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmD 287 (688)
..+...++++.+.-|++.++..++.....|...|.. ... -..+-.+|++|.++|.++++.......|-+
T Consensus 122 ~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~k--a~~---~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~ 190 (262)
T PF14257_consen 122 SRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEK--AKT---VEDLLEIERELSRVRSEIEQLEGQLKYLDD 190 (262)
T ss_pred eeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788888889999999888888888888883 335 678889999999999999987665554433
No 454
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=66.76 E-value=36 Score=39.27 Aligned_cols=68 Identities=10% Similarity=0.102 Sum_probs=49.7
Q ss_pred HHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 219 VESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSAS-WKKRVEELENEIKKLREELESEKAAREVAWA 287 (688)
Q Consensus 219 VEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~-~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmD 287 (688)
...+..++..++.....++.++.+||.+|.... .+.. ..+++..+-.++.+++.+++.-..++++|..
T Consensus 558 ~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~ 626 (638)
T PRK10636 558 TQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSE-LYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQE 626 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566788888999999999999999997542 2211 1346788888888888888877777777765
No 455
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=66.73 E-value=27 Score=29.34 Aligned_cols=56 Identities=14% Similarity=0.227 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHhHHHHHHHHhhHH
Q 005601 100 AKQKELAEISRISAEQKHEMEDLNDRLSASM-QSCTEANEIMKSQKVTIDELKTQLD 155 (688)
Q Consensus 100 kKeKEL~~ae~~~~~~Es~indLearLsaa~-sdrk~aeeelkelkaei~eLe~qLe 155 (688)
.+...+..++..+.+.+..|..++-++..+- +.|..+...++..+.++..|+++|.
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555666666666666666666665554 7788888888888888888888774
No 456
>COG5283 Phage-related tail protein [Function unknown]
Probab=66.72 E-value=3.7e+02 Score=34.51 Aligned_cols=97 Identities=12% Similarity=0.182 Sum_probs=71.7
Q ss_pred hhhHHHHHhhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 005601 63 NENRVVVERHEKEMKEMKESV------SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEA 136 (688)
Q Consensus 63 rEvs~IK~~YEsEL~DARklL------~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~a 136 (688)
..++.+-.+||+-++-+...| .--+.+-.+-++.-+.....++....+.....+.++.+++.+|.++-..+++|
T Consensus 32 ~~~~~~~k~~e~q~k~t~~~ls~s~~k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~tqae~~~~sa 111 (1213)
T COG5283 32 KDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQAENKLRSL 111 (1213)
T ss_pred HhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677789999999999988 22234455667777777888888888899999999999999999988888866
Q ss_pred HHHHH-------HhHHHHHHHHhhHHHHHh
Q 005601 137 NEIMK-------SQKVTIDELKTQLDEERN 159 (688)
Q Consensus 137 eeelk-------elkaei~eLe~qLee~Rk 159 (688)
--.+. -+.++|.++..++.-+-+
T Consensus 112 s~q~~~a~~q~~~~~~~iq~~~~~is~t~k 141 (1213)
T COG5283 112 SGQFGVASEQLMLQQKEIQRLQYAISTLNK 141 (1213)
T ss_pred HhhhchhhHHHHHHHHHHHHHHHHHHhhhh
Confidence 54443 445666666666655555
No 457
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=66.64 E-value=5.4 Score=45.81 Aligned_cols=87 Identities=23% Similarity=0.225 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhhHhHHHHHhhhH---HHHHHhhHhHhhHHHhhhhhhH
Q 005601 258 KKRVEELENEIKKLREELESEK--------AAREVAWAKVSGLELDILAATRDLD---FERRRLKAARERIMLRETQLRA 326 (688)
Q Consensus 258 ~k~l~~lE~Ei~rLR~EMe~QL--------~EYQdLmDiKvaLDlEIaAYrKLLE---gEE~RLkgareri~lretqlra 326 (688)
..-+..++.|+.||..--.+.+ .+.+++||+---=+-+..++.-.+. .| .=|..-..- =..|+.
T Consensus 263 ~~~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~~~~s~eer~~F~~~~~d~~~E-~lL~~hE~E----i~~Lk~ 337 (619)
T PF03999_consen 263 LDTIEALEEELERLEELKKQNLKEFIEKKRQEIEELWDKCHYSEEERQAFTPFYIDSYTE-ELLELHEEE----IERLKE 337 (619)
T ss_dssp -----------------------------------------------------------------------------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccchH-HHHHHHHHH----HHHHHH
Confidence 4567778888888776544444 4446666654433333333211111 11 111111111 136899
Q ss_pred hhccHHHHHHHHHHHHHHHHHHH
Q 005601 327 FYSTTEEISVLFARQQEQLKAMQ 349 (688)
Q Consensus 327 fystteeis~lfakqqeqlkaMQ 349 (688)
||.+-.+|=.|+.|=++-.+.|.
T Consensus 338 ~~~~~k~Il~~v~k~~~l~~~~~ 360 (619)
T PF03999_consen 338 EYESRKPILELVEKWESLWEEME 360 (619)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988776665553
No 458
>PF08703 PLC-beta_C: PLC-beta C terminal; InterPro: IPR014815 This domain corresponds to the alpha helical C-terminal domain of phospholipase C beta. ; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1JAD_A.
Probab=66.56 E-value=1.6e+02 Score=30.19 Aligned_cols=117 Identities=17% Similarity=0.266 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHhHHHHHHHHh
Q 005601 77 KEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEAN----EIMKSQKVTIDELKT 152 (688)
Q Consensus 77 ~DARklL~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~ae----eelkelkaei~eLe~ 152 (688)
.-+.+++..+=..|++-|+..+++=+|++.- .--..+.+++. .....++...+ ++..+-..+.....+
T Consensus 44 ~kl~el~~e~Q~~QlK~LKe~~EkE~KElkK-----~L~~kr~e~I~---~k~~~dK~e~er~KrEin~s~I~e~V~~ik 115 (185)
T PF08703_consen 44 QKLEELARECQAAQLKKLKETCEKETKELKK-----KLDRKRLESIK---EKKTKDKDEQERLKREINRSHIQEVVQEIK 115 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH---HTT---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----HHhHHHHHHHH---HhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666677888888777777777763 11223344444 22222222222 223333334444556
Q ss_pred hHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHH
Q 005601 153 QLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQ 201 (688)
Q Consensus 153 qLee~RkqLEVDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE 201 (688)
+|..+.......|...-..+.+.|.+.+.++|.+|..-|++++...-.+
T Consensus 116 rL~~~qekrqekL~~kh~e~lq~i~ee~~k~q~~l~~eye~k~~~L~~E 164 (185)
T PF08703_consen 116 RLEEKQEKRQEKLEEKHEEVLQQIEEEEKKLQAELEQEYEEKMKRLPQE 164 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 6666666666777777777888888889999999999999988877665
No 459
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=66.48 E-value=99 Score=27.79 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=7.5
Q ss_pred HHHhhHHHHHHHHHHH
Q 005601 68 VVERHEKEMKEMKESV 83 (688)
Q Consensus 68 IK~~YEsEL~DARklL 83 (688)
-+..++..+.+.+.++
T Consensus 21 ~~~~l~~~~~E~~~v~ 36 (105)
T cd00632 21 QRQKVEAQLNENKKAL 36 (105)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555544443
No 460
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=66.36 E-value=68 Score=32.58 Aligned_cols=72 Identities=22% Similarity=0.272 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhh
Q 005601 89 HQLKVLRDMLDAKQKELAEISRISAEQK----HEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNL 160 (688)
Q Consensus 89 ~EleELk~~L~kKeKEL~~ae~~~~~~E----s~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~Rkq 160 (688)
..+..|.+.|.+..+++..+++.++..+ ..+..|+.+........-.++-....++.+|.+|+.+......+
T Consensus 143 ~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~~ 218 (221)
T PF05700_consen 143 AMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKEN 218 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344455555555555555555444332 34556777777777777777777777777777777776665544
No 461
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=66.22 E-value=1.5e+02 Score=29.84 Aligned_cols=139 Identities=17% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------------HHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh-hhhhc
Q 005601 105 LAEISRISAEQKHEMEDLNDRLSAS----------------MQSCTEANEIMKSQKVTIDELKTQLDEERNLRR-VDREN 167 (688)
Q Consensus 105 L~~ae~~~~~~Es~indLearLsaa----------------~sdrk~aeeelkelkaei~eLe~qLee~RkqLE-VDlEN 167 (688)
+.-++.++..|.++|.+|+.++++. ..+...+---+.+=....++|..--.-+|-||+ ....|
T Consensus 18 v~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N 97 (182)
T PF15035_consen 18 VQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKAN 97 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred h-----HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHH
Q 005601 168 A-----EADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRL 242 (688)
Q Consensus 168 ~-----EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIRe 242 (688)
. -.+|...+..+|.+ +......++..=+.++.-++.-..++-.|=..+.-
T Consensus 98 ~~L~~dl~klt~~~~~l~~e-------------------------L~~ke~~~~~ee~~~~~y~~~eh~rll~LWr~v~~ 152 (182)
T PF15035_consen 98 EALQEDLQKLTQDWERLRDE-------------------------LEQKEAEWREEEENFNQYLSSEHSRLLSLWREVVA 152 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 005601 243 LETQVCKEQNVSASWKKRVEELENEIKKL 271 (688)
Q Consensus 243 LE~qL~~Er~~s~~~~k~l~~lE~Ei~rL 271 (688)
|=++..+-|... .+.|...-.|+.++
T Consensus 153 lRr~f~elr~~T---erdL~~~r~e~~r~ 178 (182)
T PF15035_consen 153 LRRQFAELRTAT---ERDLSDMRAEFART 178 (182)
T ss_pred HHHHHHHHHHHH---HhhHHHHHHHHHHH
No 462
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.93 E-value=1.8e+02 Score=30.65 Aligned_cols=61 Identities=25% Similarity=0.255 Sum_probs=28.7
Q ss_pred HHHhhHHHHHhhhh-hhhhchHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHhHHHHHHHHHHH
Q 005601 149 ELKTQLDEERNLRR-VDRENAEADLKAAVQKSQLETQEKLKRLSDAAS-RRELEQQEVINKLQ 209 (688)
Q Consensus 149 eLe~qLee~RkqLE-VDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~-r~nReE~~~a~kaq 209 (688)
-|+.|.-..-+.++ .++....-+.-.+++..|.....=-|.++++.+ |++|++..++.+..
T Consensus 77 mlKtqrv~e~nlre~e~~~q~k~Eiersi~~a~~kie~lkkql~eaKi~r~nrqe~~~l~kvi 139 (222)
T KOG3215|consen 77 MLKTQRVIEMNLREIENLVQKKLEIERSIQKARNKIELLKKQLHEAKIVRLNRQEYSALSKVI 139 (222)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33444433333333 333333444455555555553333334455554 77777744444443
No 463
>PRK09343 prefoldin subunit beta; Provisional
Probab=65.50 E-value=79 Score=29.56 Aligned_cols=36 Identities=14% Similarity=0.175 Sum_probs=19.7
Q ss_pred HHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHH
Q 005601 214 QSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCK 249 (688)
Q Consensus 214 e~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~ 249 (688)
...-|++.+..+|..++++...+..++.+++.+|..
T Consensus 75 ~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ 110 (121)
T PRK09343 75 ELKERKELLELRSRTLEKQEKKLREKLKELQAKINE 110 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555543
No 464
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=65.41 E-value=1.8e+02 Score=30.35 Aligned_cols=38 Identities=13% Similarity=0.022 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhh
Q 005601 266 NEIKKLREELESEKAAREVAWAKVSGLELDILAATRDL 303 (688)
Q Consensus 266 ~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaAYrKLL 303 (688)
.+..++....+...++++.--+-...|=..|.|+.+|+
T Consensus 218 ~~~~~l~~~~~~~~a~~~~~~~~~~G~l~R~~Al~~L~ 255 (301)
T PF14362_consen 218 ARKARLDEARQAKVAEFQAIISANDGFLARLEALWELT 255 (301)
T ss_pred HHHHHHHHHHHHHHHHHhHhhccCCCHHHHHHHHHHHH
Confidence 44445555555555555554455555666777777777
No 465
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=65.01 E-value=44 Score=35.08 Aligned_cols=35 Identities=26% Similarity=0.386 Sum_probs=27.4
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 246 QVCKEQNVSASWKKRVEELENEIKKLREELESEKAARE 283 (688)
Q Consensus 246 qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQ 283 (688)
.+...|++| +.+..+||.|+++++.++..-.+|-.
T Consensus 83 IVtsQRDRF---R~Rn~ELE~elr~~~~~~~~L~~Ev~ 117 (248)
T PF08172_consen 83 IVTSQRDRF---RQRNAELEEELRKQQQTISSLRREVE 117 (248)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467789999 99999999999888777766555443
No 466
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=64.75 E-value=1.6e+02 Score=29.60 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=8.7
Q ss_pred hhhhccchhhHHHHHhhHH
Q 005601 56 LEIDKLRNENRVVVERHEK 74 (688)
Q Consensus 56 eti~tltrEvs~IK~~YEs 74 (688)
..|.++..|+..+-..|+.
T Consensus 65 ~aw~~i~~e~~~~a~~H~~ 83 (251)
T cd07653 65 KAFRSILNEVNDIAGQHEL 83 (251)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444555555444443
No 467
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=64.66 E-value=38 Score=31.35 Aligned_cols=66 Identities=18% Similarity=0.260 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh
Q 005601 97 MLDAKQKELAEISRISAEQKHEMEDLNDRL-SASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR 162 (688)
Q Consensus 97 ~L~kKeKEL~~ae~~~~~~Es~indLearL-saa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE 162 (688)
.|......+..++.....+++-+.+|.+.| ..|...-..+.-+-..+...+..|+++|.+.+..|+
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~ 68 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLE 68 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677777777888888888888777 555555555555555555555666666666555554
No 468
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=64.56 E-value=2.3e+02 Score=31.36 Aligned_cols=64 Identities=17% Similarity=0.223 Sum_probs=33.1
Q ss_pred HHHHHHhHHHHHHHHhhHHHHHhhhh-hhhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHH
Q 005601 137 NEIMKSQKVTIDELKTQLDEERNLRR-VDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQ 201 (688)
Q Consensus 137 eeelkelkaei~eLe~qLee~RkqLE-VDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE 201 (688)
+++++=-+++-++.+-.+++--+.|+ ..+-.+ .--.|-+|+|-.+|.|+-||.-++.-|+--++
T Consensus 294 eeelnikk~e~~kikqe~ddkdk~~ed~e~kkr-qlerqekqeleqmaeeekkr~eeaeerqraee 358 (445)
T KOG2891|consen 294 EEELNIKKAEACKIKQEFDDKDKHLEDAEIKKR-QLERQEKQELEQMAEEEKKREEEAEERQRAEE 358 (445)
T ss_pred HhhhhhhHHHhhchhhhcCcccchhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 34444445555556655555444444 111111 11134566666676677777777666655444
No 469
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=64.46 E-value=1.8e+02 Score=30.17 Aligned_cols=89 Identities=19% Similarity=0.167 Sum_probs=61.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHh---HHHHH
Q 005601 227 DETRERLVTSDNKVRLLETQV-CKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVS--GLELD---ILAAT 300 (688)
Q Consensus 227 ~dLe~~n~ale~RIReLE~qL-~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKv--aLDlE---IaAYr 300 (688)
..+...-...+.++++++... ..++.....+.+.+..+...+.+.+..++.-..+|+..+..-- ..+=+ ..++.
T Consensus 120 k~l~ksKk~Ye~~Cke~~~a~q~~~k~~~~~t~keleK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~w~~~~~~~~~ 199 (242)
T cd07671 120 KKTMESKKTYEQRCREADEAEQTFERSSSTGNPKQSEKSQNKAKQCRDAATEAERVYKQNIEQLDKARTEWETEHILTCE 199 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444456778888887642 2233333334788899999999999999999999998777322 22222 26889
Q ss_pred hhhHHHHHHhhHhHh
Q 005601 301 RDLDFERRRLKAARE 315 (688)
Q Consensus 301 KLLEgEE~RLkgare 315 (688)
+.-+.|+.||.--+.
T Consensus 200 ~~Q~lEeeRi~f~K~ 214 (242)
T cd07671 200 VFQLQEDDRITILRN 214 (242)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999976554
No 470
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=64.41 E-value=1.1e+02 Score=28.92 Aligned_cols=70 Identities=16% Similarity=0.166 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHH
Q 005601 171 DLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVC 248 (688)
Q Consensus 171 kLqqALqeLR~Qa~ee~kr~~Daq~r~nReE~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~ 248 (688)
+|++.-.+||+| +.-=-+.--+++.-...+.+.++..-..|-.+...++.|.=+|..|.+||..|-..|.
T Consensus 2 kla~eYsKLraQ--------~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 2 KLAQEYSKLRAQ--------NQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred hHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777 2222222234455556777777777777777777777777777777777777655554
No 471
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=64.39 E-value=1.9e+02 Score=30.22 Aligned_cols=105 Identities=13% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 005601 115 QKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAA 194 (688)
Q Consensus 115 ~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq 194 (688)
|.--.+=+++|=..-..+...++....+......+.+.+|..++++...=++++...-++..+++..+|+++..+.-...
T Consensus 27 ~kPi~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a 106 (250)
T PRK14474 27 YKPIIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEW 106 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHHH-HHHHHHHHHHHHHHhHHH
Q 005601 195 SRRELEQ-QEVINKLQIAEKQSSLQV 219 (688)
Q Consensus 195 ~r~nReE-~~~a~kaqEElke~R~RV 219 (688)
......+ ..+...++.+...+-..+
T Consensus 107 ~~~ie~Ek~~a~~~L~~~v~~la~~~ 132 (250)
T PRK14474 107 LEQLEREKQEFFKALQQQTGQQMVKI 132 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 472
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=64.17 E-value=71 Score=33.91 Aligned_cols=18 Identities=22% Similarity=0.119 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005601 93 VLRDMLDAKQKELAEISR 110 (688)
Q Consensus 93 ELk~~L~kKeKEL~~ae~ 110 (688)
+++..+...+.++..|+.
T Consensus 110 ~~~~~l~~a~~~l~~a~~ 127 (370)
T PRK11578 110 ELRAQRQQAEAELKLARV 127 (370)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333334443333
No 473
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=64.12 E-value=1.4e+02 Score=28.52 Aligned_cols=32 Identities=3% Similarity=0.008 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 99 DAKQKELAEISRISAEQKHEMEDLNDRLSASM 130 (688)
Q Consensus 99 ~kKeKEL~~ae~~~~~~Es~indLearLsaa~ 130 (688)
++-.+.+..|+......+....+.+.+|..+.
T Consensus 39 ~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~ 70 (159)
T PRK13461 39 SEIDNKIEKADEDQKKARELKLKNERELKNAK 70 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555543
No 474
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=63.94 E-value=30 Score=32.18 Aligned_cols=49 Identities=14% Similarity=0.178 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHh
Q 005601 111 ISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERN 159 (688)
Q Consensus 111 ~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~Rk 159 (688)
.+..++.++..+.+.+.+.+.....+.++...|+.+.+.|+..|....+
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677888888888888888888899999999999999999888877655
No 475
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=63.89 E-value=2.1e+02 Score=31.93 Aligned_cols=44 Identities=18% Similarity=0.139 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 005601 84 SISYLHQLKVLRDMLDAKQKELAEI-SRISAEQKHEMEDLNDRLS 127 (688)
Q Consensus 84 ~kk~~~EleELk~~L~kKeKEL~~a-e~~~~~~Es~indLearLs 127 (688)
+.-+.-...++..+|+....-|..+ ...+...+.+++.|..+|.
T Consensus 250 ae~~~p~~~el~qrLd~l~~RL~~am~~~L~~~r~rL~~L~~RL~ 294 (432)
T TIGR00237 250 AEIVSPNQDELLQRLDGFNVRLHRAFDTLLHQKKARLEQLVASLQ 294 (432)
T ss_pred HHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4444455555555555555555433 3344445555555555554
No 476
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=63.85 E-value=1.1e+02 Score=27.36 Aligned_cols=69 Identities=17% Similarity=0.292 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhh
Q 005601 91 LKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRE 166 (688)
Q Consensus 91 leELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlE 166 (688)
|+-++..++....++. .+++.-.+++-++++-++++..+-.-+.+|...-.+++.+.+++=..|+..|+
T Consensus 6 Ld~ir~Ef~~~~~e~~-------~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 6 LDAIRQEFENLSQEAN-------SYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444 33444444445555666655555555555555555555555444444444443
No 477
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=63.83 E-value=2.3e+02 Score=31.04 Aligned_cols=14 Identities=7% Similarity=-0.031 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 005601 169 EADLKAAVQKSQLE 182 (688)
Q Consensus 169 EakLqqALqeLR~Q 182 (688)
+...++.|+.++..
T Consensus 114 ~~~y~~~~~~l~~~ 127 (332)
T TIGR01541 114 SDLYKEQLAAIKAA 127 (332)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 478
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=63.81 E-value=45 Score=39.45 Aligned_cols=72 Identities=21% Similarity=0.298 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh
Q 005601 91 LKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR 162 (688)
Q Consensus 91 leELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE 162 (688)
+.+++.-+..-.-||.+++.++..+.|.|.+++.++...++..-...-++..||-+|...+.++.++|.+-.
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~ 152 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNN 152 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcC
Confidence 334444455566778888888888888888888888888888888888899999999999999988886644
No 479
>COG5281 Phage-related minor tail protein [Function unknown]
Probab=63.81 E-value=3.6e+02 Score=33.36 Aligned_cols=91 Identities=16% Similarity=0.188 Sum_probs=44.0
Q ss_pred HHhhhhhHHHHHHhHHH---HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHh-------------------hhhHHHHHH
Q 005601 185 EKLKRLSDAASRRELEQ---QEVINKLQIAEKQSSLQVESLKLKLDETRERL-------------------VTSDNKVRL 242 (688)
Q Consensus 185 ee~kr~~Daq~r~nReE---~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n-------------------~ale~RIRe 242 (688)
.+.|+.++....+.-+. .-++-+.+|-++........+..+|+|+...+ ..++.+.|.
T Consensus 457 ~~~~a~~~~~~~~~~q~~~~~~Aa~~sqe~~t~a~~~l~a~~q~iadl~~~~~~a~~qk~l~~k~e~~~A~~~~~a~q~~ 536 (833)
T COG5281 457 KAAKAYQEDILQREAQSRGKTAAAERSQEQMTAALKALLAFQQQIADLSGAKEKASDQKSLLWKAEEQYALLKEEAKQRQ 536 (833)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhhcccccHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34445444444433333 22333333555555555555555555554433 233444444
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 243 LETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAARE 283 (688)
Q Consensus 243 LE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQ 283 (688)
|-.| .....| .++..++.++|..| +.+|..+|+
T Consensus 537 l~~q--~~l~~~---kk~~l~y~~Qla~~---~~qqa~r~~ 569 (833)
T COG5281 537 LQEQ--KALLEH---KKETLEYTSQLAEL---LDQQADRFE 569 (833)
T ss_pred HHHH--HHHHHH---HHHHHHHHHHHHHH---hhHHHHHHH
Confidence 4444 444444 55555555555555 555555555
No 480
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=63.77 E-value=90 Score=27.42 Aligned_cols=61 Identities=20% Similarity=0.308 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHH
Q 005601 86 SYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 156 (688)
Q Consensus 86 k~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee 156 (688)
.++.=++.|+..+.+..+++ ++.+++|...+..+.+....|...++.|-.++..|-.+++.
T Consensus 7 qLl~ale~Lq~~y~~q~~~W----------q~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~r 67 (70)
T PF04899_consen 7 QLLSALEELQQSYEKQQQEW----------QSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLER 67 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555666666666655444 46777788888888777777777777777777777666654
No 481
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=63.62 E-value=1.9e+02 Score=30.08 Aligned_cols=36 Identities=14% Similarity=0.187 Sum_probs=18.0
Q ss_pred HHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 005601 219 VESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVS 254 (688)
Q Consensus 219 VEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s 254 (688)
+.+|+..++-|++.+...-.+..+.-.....||..-
T Consensus 133 ~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W 168 (202)
T PF06818_consen 133 LGSLRREVERLRAELQRERQRREEQRSSFEQERRTW 168 (202)
T ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 444555555555555544444444444445555444
No 482
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=63.55 E-value=20 Score=40.93 Aligned_cols=17 Identities=29% Similarity=0.565 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005601 259 KRVEELENEIKKLREEL 275 (688)
Q Consensus 259 k~l~~lE~Ei~rLR~EM 275 (688)
.++..++.|+++|+.+|
T Consensus 104 ~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 104 RRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 483
>PF15456 Uds1: Up-regulated During Septation
Probab=63.41 E-value=91 Score=29.78 Aligned_cols=71 Identities=21% Similarity=0.243 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hHHHHHHHHHHhHHHHHHHHhhHHH
Q 005601 88 LHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQ-----------SCTEANEIMKSQKVTIDELKTQLDE 156 (688)
Q Consensus 88 ~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~s-----------drk~aeeelkelkaei~eLe~qLee 156 (688)
++|.++|++.+...+.-|..+.+++. +++.+-+.-..++.+.. ...+.++++......++++-..|..
T Consensus 21 ~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~ 99 (124)
T PF15456_consen 21 FEEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWK 99 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 57888888888888888888888877 77777666655555532 3456666666666666666666554
Q ss_pred HHh
Q 005601 157 ERN 159 (688)
Q Consensus 157 ~Rk 159 (688)
+.+
T Consensus 100 le~ 102 (124)
T PF15456_consen 100 LEN 102 (124)
T ss_pred HHH
Confidence 433
No 484
>PRK00846 hypothetical protein; Provisional
Probab=63.29 E-value=56 Score=29.20 Aligned_cols=55 Identities=24% Similarity=0.273 Sum_probs=36.3
Q ss_pred HHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 005601 214 QSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREEL 275 (688)
Q Consensus 214 e~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EM 275 (688)
++.+|-+.+..+|.+|+.++++.++-|.+|=..+..- .+.++.+..+|+.|.+.+
T Consensus 3 ~~~~~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~q-------q~~I~~L~~ql~~L~~rL 57 (77)
T PRK00846 3 QLSLRDQALEARLVELETRLSFQEQALTELSEALADA-------RLTGARNAELIRHLLEDL 57 (77)
T ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 3556777788888888888888888888876555442 334455555555555543
No 485
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=63.09 E-value=2.3e+02 Score=30.74 Aligned_cols=62 Identities=24% Similarity=0.202 Sum_probs=33.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005601 226 LDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGL 292 (688)
Q Consensus 226 L~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaL 292 (688)
|++.++=+.++.+|.++|..+... -+ -..-..++...|.+++..-+.-+...-+.|+.-.-|
T Consensus 126 L~Eqqql~~sL~~r~~elk~~~~~---~s--e~rv~~el~~K~~~~k~~~e~Ll~~LgeFLeeHfPl 187 (268)
T PF11802_consen 126 LDEQQQLLESLNKRHEELKNQVET---FS--ESRVFQELKTKIEKIKEYKEKLLSFLGEFLEEHFPL 187 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc---cc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 444555556777888887765422 11 112234556666666655555555555555554443
No 486
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=62.65 E-value=2.7e+02 Score=31.42 Aligned_cols=20 Identities=5% Similarity=-0.085 Sum_probs=13.5
Q ss_pred HHHHHHHHhhhHhHHHHHhh
Q 005601 283 EVAWAKVSGLELDILAATRD 302 (688)
Q Consensus 283 QdLmDiKvaLDlEIaAYrKL 302 (688)
.+|+++.-.||-+..--|-|
T Consensus 204 ~el~~v~~~l~~~~~lrr~l 223 (445)
T PRK13428 204 DELVSVAKLLDREPVLTKHL 223 (445)
T ss_pred HHHHHHHHHHcccHHHHHHc
Confidence 57788888888776544433
No 487
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=62.54 E-value=11 Score=33.99 Aligned_cols=12 Identities=33% Similarity=0.462 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH
Q 005601 169 EADLKAAVQKSQ 180 (688)
Q Consensus 169 EakLqqALqeLR 180 (688)
...|+.+|-..+
T Consensus 62 ~~~l~~~l~~aq 73 (131)
T PF05103_consen 62 EESLQRALIQAQ 73 (131)
T ss_dssp ------------
T ss_pred HHHHHHhhhhhh
Confidence 445555554333
No 488
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=62.35 E-value=47 Score=40.79 Aligned_cols=16 Identities=19% Similarity=0.148 Sum_probs=9.1
Q ss_pred hHHHHHHhhHhHhhHH
Q 005601 303 LDFERRRLKAARERIM 318 (688)
Q Consensus 303 LEgEE~RLkgareri~ 318 (688)
|..|=.++++.+-+++
T Consensus 584 l~~ei~~~k~~kv~l~ 599 (913)
T KOG0244|consen 584 LLQEIHIAKGQKVQLL 599 (913)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455566666665554
No 489
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=62.30 E-value=11 Score=37.75 Aligned_cols=25 Identities=12% Similarity=0.320 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 005601 118 EMEDLNDRLSASMQSCTEANEIMKS 142 (688)
Q Consensus 118 ~indLearLsaa~sdrk~aeeelke 142 (688)
.+.|++.+||+|+-...-||.||.+
T Consensus 1 SLeD~EsklN~AIERnalLE~ELdE 25 (166)
T PF04880_consen 1 SLEDFESKLNQAIERNALLESELDE 25 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3789999999999999999998843
No 490
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=62.18 E-value=1.8e+02 Score=32.23 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhHHHH
Q 005601 118 EMEDLNDRLSASMQSCTEANEIMKSQKVTI 147 (688)
Q Consensus 118 ~indLearLsaa~sdrk~aeeelkelkaei 147 (688)
.+...++.|.++....+.+...++.+++.|
T Consensus 92 al~qAea~la~a~~~~~~~~a~~~~~~A~i 121 (352)
T COG1566 92 ALEQAEAALAAAEAQLRNLRAQLASAQALI 121 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 491
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=62.11 E-value=1.6e+02 Score=28.66 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=10.8
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhh
Q 005601 167 NAEADLKAAVQKSQLETQEKLKRLS 191 (688)
Q Consensus 167 N~EakLqqALqeLR~Qa~ee~kr~~ 191 (688)
++...-.+..++++.+|++++.|..
T Consensus 80 ~A~~~a~~~~~e~~~~a~~e~~r~~ 104 (161)
T COG0711 80 QAKKEAEQIAEEIKAEAEEELERIK 104 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444433
No 492
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=62.09 E-value=54 Score=33.67 Aligned_cols=66 Identities=18% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 210 IAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKA 280 (688)
Q Consensus 210 EElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~ 280 (688)
|++..+.+.|--|..|+..|++..+..++-|+.|-+.|.-|...- .++.|..+.+.+|+-|.+-++
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe-----~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQE-----EIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHH-----HHHHHHHHHHHHHHHHHHHHH
No 493
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=61.82 E-value=1.2e+02 Score=27.33 Aligned_cols=97 Identities=13% Similarity=0.165 Sum_probs=0.0
Q ss_pred HhHHHHHHHHhhHHHHHhhhh---hhhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHH----HHHHHHHHHHHHH
Q 005601 142 SQKVTIDELKTQLDEERNLRR---VDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQ----QEVINKLQIAEKQ 214 (688)
Q Consensus 142 elkaei~eLe~qLee~RkqLE---VDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE----~~~a~kaqEElke 214 (688)
..+.++..+...|..-|.... +.+...+..|...-+.|+.. .-.|+.-++.|-.. ..-+......-.+
T Consensus 4 ~kkre~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~-----~~~f~~flken~~k~~rA~k~a~~e~k~~~~ 78 (126)
T PF13863_consen 4 EKKREMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEED-----VIKFDKFLKENEAKRERAEKRAEEEKKKKEE 78 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHHHHHHHhHHHHHHHhhhhHHHHHHH
Q 005601 215 SSLQVESLKLKLDETRERLVTSDNKVRLL 243 (688)
Q Consensus 215 ~R~RVEsL~sKL~dLe~~n~ale~RIReL 243 (688)
....|..|..+|..+++....++.++..+
T Consensus 79 k~~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 79 KEAEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=61.79 E-value=1.9e+02 Score=29.53 Aligned_cols=167 Identities=13% Similarity=0.095 Sum_probs=0.0
Q ss_pred hhhhhhhccchhhHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 53 SQVLEIDKLRNENRVVVERHEKEMKEMKESV--SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASM 130 (688)
Q Consensus 53 ~~eeti~tltrEvs~IK~~YEsEL~DARklL--~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~indLearLsaa~ 130 (688)
+....|.++..++..+-..|..=-.-+..++ +.+|......-++.+..-......+..........+...-.+|.++.
T Consensus 57 t~~~~w~~i~~~~e~~a~~H~~l~~~L~~~~~~l~~~~~~~~k~rK~~k~~~~~~~k~~~~~~~~~~~l~KaK~~Y~~~c 136 (261)
T cd07648 57 TFAPLWLVLRVSTEKLSELHLQLVQKLQELIKDVQKYGEEQHKKHKKVKEEESGTAEAVQAIQTTTAALQKAKEAYHARC 136 (261)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhch-------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHH-H
Q 005601 131 QSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENA-------EADLKAAVQKSQLETQEKLKRLSDAASRRELEQ-Q 202 (688)
Q Consensus 131 sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~-------EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE-~ 202 (688)
.+...+..... ..+++.+++..+..++.....-+++. +.++..+++.++.- -+..+...|+- .
T Consensus 137 ~e~e~~~~~~~-s~k~~eK~~~K~~ka~~~Y~~~v~~~~~~~~~~~~~m~~~~~~~Q~l--------Ee~Ri~~~k~~l~ 207 (261)
T cd07648 137 LELERLRRENA-SPKEIEKAEAKLKKAQDEYKALVEKYNNIRADFETKMTDSCKRFQEI--------EESHLRQMKEFLA 207 (261)
T ss_pred HHHHHHHHccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHH
Q 005601 203 EVINKLQIAEKQSSLQVESLKLKLDE 228 (688)
Q Consensus 203 ~~a~kaqEElke~R~RVEsL~sKL~d 228 (688)
..++..-.-.-....-.+.++..|..
T Consensus 208 ~y~~~~~~~~~~~~~~~e~~~~~~~~ 233 (261)
T cd07648 208 SYAEVLSENHSAVGQVHEEFKRQVDE 233 (261)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHh
No 495
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=61.77 E-value=3.3e+02 Score=32.13 Aligned_cols=229 Identities=15% Similarity=0.119 Sum_probs=0.0
Q ss_pred hhhhhhhccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH------
Q 005601 53 SQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEM-EDLNDR------ 125 (688)
Q Consensus 53 ~~eeti~tltrEvs~IK~~YEsEL~DARklL~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~i-ndLear------ 125 (688)
.+++.-.++..|+..+...--.==.++=+-++++=.-=-..|++++-..++-+...+..+...|..+ ++|+.+
T Consensus 157 ~qe~~~~k~d~E~arm~aqi~~l~eEmS~r~l~reakl~~~lqk~f~alEk~mka~e~~rl~~E~~lreElE~rW~~lq~ 236 (531)
T PF15450_consen 157 SQEEDSQKVDNEVARMQAQITKLGEEMSLRFLKREAKLCSFLQKSFLALEKRMKAQESSRLRTERSLREELESRWQKLQE 236 (531)
T ss_pred cchhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----------------HHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh-------------hhhhch-----HHH
Q 005601 126 ----------------LSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR-------------VDRENA-----EAD 171 (688)
Q Consensus 126 ----------------Lsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE-------------VDlEN~-----Eak 171 (688)
+....+++.++-+....+-.-+..|.+.+...++.|+ ..++-. +.+
T Consensus 237 l~Ee~l~al~gq~ev~~~~~~~E~~~l~eq~~~ld~AV~~Ltk~v~~~q~sL~kvl~aE~kaR~~k~~~e~sk~eeL~~~ 316 (531)
T PF15450_consen 237 LTEERLRALQGQQEVGLGGIQSEESKLLEQCRKLDEAVAQLTKFVQQNQKSLNKVLNAEQKARDAKEKLEESKAEELATK 316 (531)
T ss_pred HHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHhhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHhHHH----HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHH
Q 005601 172 LKAAVQKSQLETQEKLKRLSDAASRRELEQ----QEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQV 247 (688)
Q Consensus 172 LqqALqeLR~Qa~ee~kr~~Daq~r~nReE----~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL 247 (688)
|+..|-.|+.- ..-..+.-.-. ++-.+.+-+.+..+--.|-.|..++..|..+ +.-....|..-|
T Consensus 317 L~~~lea~q~a--------gkla~Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~r---ld~qEqtL~~rL 385 (531)
T PF15450_consen 317 LQENLEAMQLA--------GKLAQQETQSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWR---LDLQEQTLNLRL 385 (531)
T ss_pred HHHHHHHHHHh--------hhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHH
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHH
Q 005601 248 CKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILA 298 (688)
Q Consensus 248 ~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmDiKvaLDlEIaA 298 (688)
..-+..+ ....-..-..|.+.+++|+..+.+.++-+| +|=-+|..
T Consensus 386 ~e~~~e~---~~~~r~~lekl~~~q~e~~~~l~~v~eKVd---~LpqqI~~ 430 (531)
T PF15450_consen 386 SEAKNEW---ESDERKSLEKLDQWQNEMEKHLKEVQEKVD---SLPQQIEE 430 (531)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHH
No 496
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=61.65 E-value=1.4e+02 Score=27.94 Aligned_cols=118 Identities=14% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhHHHHHhhhh----hhhhchHHHHHHHHHHHHHHHHHHh
Q 005601 112 SAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRR----VDRENAEADLKAAVQKSQLETQEKL 187 (688)
Q Consensus 112 ~~~~Es~indLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLE----VDlEN~EakLqqALqeLR~Qa~ee~ 187 (688)
..-++.|-......+..+...+..++..+...+..+.+.+..-...+.... ...+..-......+..+..+|+.+|
T Consensus 30 ~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i 109 (156)
T PRK05759 30 MKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEI 109 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhHHHHHHhHHH-----HHHHHHHHHHHHHHhHHHHHHHHhHHHH
Q 005601 188 KRLSDAASRRELEQ-----QEVINKLQIAEKQSSLQVESLKLKLDET 229 (688)
Q Consensus 188 kr~~Daq~r~nReE-----~~~a~kaqEElke~R~RVEsL~sKL~dL 229 (688)
.+......+..+.+ ...+.+.....--....-.-+..-|.++
T Consensus 110 ~~e~~~a~~~l~~~~~~lA~~~a~k~l~~~~d~~~~~~~i~~~i~~~ 156 (156)
T PRK05759 110 EQERKRAREELRKQVADLAVAGAEKILGRELDAAAQSDLIDKLIAEL 156 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHHHHHHhhC
No 497
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=61.62 E-value=77 Score=36.93 Aligned_cols=101 Identities=19% Similarity=0.201 Sum_probs=0.0
Q ss_pred hhhhhhhhhHHHHHhhhhhhhhhccchhhHHHHHhhHHHHHHHHHHH---------------------HHHH-HHHHHHH
Q 005601 37 FRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESV---------------------SISY-LHQLKVL 94 (688)
Q Consensus 37 VR~LE~ENsrLr~QIe~~eeti~tltrEvs~IK~~YEsEL~DARklL---------------------~kk~-~~EleEL 94 (688)
|.+||.+-++-+.||.++..+. -+.=|.|-|+.- +++| ++|.++-
T Consensus 298 v~sLEee~a~erqqlvetH~~R-------------V~AmlNdrrR~Ale~ylaALqa~pprp~~Vl~aLkrYvRAEqKdr 364 (615)
T KOG3540|consen 298 VSSLEEEAARERQQLVETHEAR-------------VEAMLNDRRRDALENYLAALQADPPRPHRVLQALKRYVRAEQKDR 364 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------HHHHHhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHhHHHHHHH
Q 005601 95 RDMLDAKQKELAEISRISAEQKHEMED----LNDRLSASMQSCTEANEIMKSQKVTIDEL 150 (688)
Q Consensus 95 k~~L~kKeKEL~~ae~~~~~~Es~ind----LearLsaa~sdrk~aeeelkelkaei~eL 150 (688)
.+.|.--+-=|...-++++.+.+++.- ++.|+|++++-..+.=-.-++++.+|++|
T Consensus 365 ~HTlrhyqHv~~vDpkkAaqmk~qV~thLrvIeeR~NqsLslL~~~P~vaqeirdev~el 424 (615)
T KOG3540|consen 365 MHTLRHYQHVLAVDPKKAAQMKSQVMTHLRVIEERINQSLSLLYDVPAVAQEIRDEVDEL 424 (615)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcchhHHHhcChHHHHHHHHHHHHH
No 498
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=61.59 E-value=63 Score=37.13 Aligned_cols=73 Identities=15% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005601 212 EKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWA 287 (688)
Q Consensus 212 lke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~EMe~QL~EYQdLmD 287 (688)
+|-+--++..++.+|..+.++|..+.+++..|-........+- ...++....++.+-+++++++++..+.+++
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i---~~av~~~~~~~~~~~~ql~~~~~~~~~~l~ 133 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQI---QQAVQSETQELTKEIEQLKSERQQLQGLID 133 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH---HHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
No 499
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=61.30 E-value=86 Score=27.53 Aligned_cols=60 Identities=18% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHH----HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhh
Q 005601 169 EADLKAAVQKSQLETQEKLKRLSDAASRRELEQ----QEVINKLQIAEKQSSLQVESLKLKLDETRERLVTS 236 (688)
Q Consensus 169 EakLqqALqeLR~Qa~ee~kr~~Daq~r~nReE----~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~al 236 (688)
|..|-.||..|+.. |..|.+.-... +.-....+-+...++.+|..|..++..|-.++.-|
T Consensus 5 E~qLl~ale~Lq~~--------y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 5 EKQLLSALEELQQS--------YEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 500
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=61.13 E-value=3.2e+02 Score=31.79 Aligned_cols=143 Identities=17% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHH-HHHHHHHhHHHHHHHHhhHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 005601 119 MEDLNDRLSASMQSCTE-ANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRR 197 (688)
Q Consensus 119 indLearLsaa~sdrk~-aeeelkelkaei~eLe~qLee~RkqLEVDlEN~EakLqqALqeLR~Qa~ee~kr~~Daq~r~ 197 (688)
+.++-++-+..-..+.. +..+......++++.++.++..+..++.++.-++.++++ ...++..++-..+..-+.+-..
T Consensus 200 m~D~KEreaeea~k~aq~~K~ea~qkq~~~~k~kkkae~~q~e~dkqr~~ae~kqqe-ak~~pe~ae~~~~~edek~aE~ 278 (489)
T PF05262_consen 200 MVDIKEREAEEAAKRAQEAKKEAQQKQKEADKEKKKAEKKQQELDKQRDEAEQKQQE-AKKLPEPAEAQQKKEDEKLAEE 278 (489)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHhCcchhhhhhhhHHHHHHHH
Q ss_pred hHHH----HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 005601 198 ELEQ----QEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLRE 273 (688)
Q Consensus 198 nReE----~~~a~kaqEElke~R~RVEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~Ei~rLR~ 273 (688)
.+.+ +..+.+.+|+..+..-.. ..++...+..-++....=+.....||..- .+ .+++
T Consensus 279 ~kkE~EKaq~E~~k~~Eea~kake~~------aee~k~Eak~~~~~ae~K~~Eaq~er~~i---Ak----------D~qk 339 (489)
T PF05262_consen 279 EKKEAEKAQEEAKKKQEEAKKAKEQA------AEELKQEAKSQEKEAEKKEEEAQQERKEI---AK----------DQQK 339 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh------HHHHhhhhhhhhhhhhHHHHHHHHHHHHH---HH----------HHHH
Q ss_pred HHHHHHHH
Q 005601 274 ELESEKAA 281 (688)
Q Consensus 274 EMe~QL~E 281 (688)
.|+++..+
T Consensus 340 ~~~e~~~e 347 (489)
T PF05262_consen 340 LIEEQKAE 347 (489)
T ss_pred HHhhhhhh
Done!