Query 005601
Match_columns 688
No_of_seqs 52 out of 54
Neff 2.9
Searched_HMMs 29240
Date Tue Mar 26 18:01:42 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005601.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2107-2111//hhsearch_pdb/005601hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tnu_A Keratin, type I cytoske 1.0 1 1 144.5 12.1 102 202-306 30-131 (131)
2 3tnu_B Keratin, type II cytosk 1.0 1 1 143.5 12.8 102 202-306 28-129 (129)
3 1x8y_A Lamin A/C; structural p 1.0 1 1 136.6 9.8 85 223-310 2-86 (86)
4 3mov_A Lamin-B1; LMNB1, B-type 1.0 1 1 134.9 6.8 85 223-310 11-95 (95)
5 1gk4_A Vimentin; intermediate 1.0 1 1 133.9 10.9 83 225-310 2-84 (84)
6 2xv5_A Lamin-A/C; structural p 1.0 1 1 117.5 7.1 64 246-312 2-65 (74)
7 1gk6_A Vimentin; intermediate 1.0 1 1 108.8 5.9 56 256-311 4-59 (59)
8 1i84_S Smooth muscle myosin he 1.0 1 1 85.6 11.3 72 90-161 865-936 (1184)
9 1i84_S Smooth muscle myosin he 1.0 1 1 83.6 8.7 89 210-298 955-1043(1184)
10 3s4r_A Vimentin; alpha-helix, 1.0 1 1 59.8 7.3 45 33-83 21-65 (93)
No 1
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=144.46 Aligned_cols=102 Identities=16% Similarity=0.230 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999988677998887599999986634889999999988997440478999999999999999999999999
Q 005601 202 QEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAA 281 (688)
Q Consensus 202 ~~~a~kaqEElke~R~RIEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~El~rLR~EMe~QL~E 281 (688)
...+..+++|+.++|..|.+|...|..+++++..+++.|+++|.....+...+ ...+..+|.+|.++|.+|+.|+.+
T Consensus 30 ~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~---q~~i~~lE~eL~~~r~em~~ql~E 106 (131)
T 3tnu_A 30 SELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQI---QEMIGSVEEQLAQLRCEMEQQNQE 106 (131)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88899879889999987999999999997168889999999998789999999---999998898898889999987999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999988886667599997424889
Q 005601 282 REVAWAKVSGLELDILAATRDLDFE 306 (688)
Q Consensus 282 YQdLlDiKvaLDlEIaAYrKLLEgE 306 (688)
||+||+||++||+||++|||||+||
T Consensus 107 Yq~Ll~vKl~Ld~EIatYRkLLEGE 131 (131)
T 3tnu_A 107 YKILLDVKTRLEQEIATYRRLLEGE 131 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999899987999999998867869
No 2
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=143.46 Aligned_cols=102 Identities=12% Similarity=0.175 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999988677998887599999986634889999999988997440478999999999999999999999999
Q 005601 202 QEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAA 281 (688)
Q Consensus 202 ~~~a~kaqEElke~R~RIEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~El~rLR~EMe~QL~E 281 (688)
...+..+++|+.++|..|.+|...|..+++++..+++.++++|.....+...+ ...+..+|.+|.++|.+|+.|+.+
T Consensus 28 ~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~---q~~i~~lE~eL~~~r~e~~~ql~E 104 (129)
T 3tnu_B 28 GDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDA---RNKLAELEEALQKAKQDMARLLRE 104 (129)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88899878889999998999999999887479999879999998789999999---999998787699999999998899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999988886667599997424889
Q 005601 282 REVAWAKVSGLELDILAATRDLDFE 306 (688)
Q Consensus 282 YQdLlDiKvaLDlEIaAYrKLLEgE 306 (688)
||+||+||++||+||++|||||+||
T Consensus 105 Yq~LlnvKl~Ld~EIatYRkLLEgE 129 (129)
T 3tnu_B 105 YQELMNTKLALDVEIATYRKLLEGE 129 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999987899999998867859
No 3
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=1.00 E-value=1 Score=136.60 Aligned_cols=85 Identities=22% Similarity=0.344 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87599999986634889999999988997440478999999999999999999999999999998888666759999742
Q 005601 223 KLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRD 302 (688)
Q Consensus 223 ~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~El~rLR~EMe~QL~EYQdLlDiKvaLDlEIaAYrKL 302 (688)
+..|+.++++++.++++++++|.....+...+ ...+..+|.++.++|.+|+.|+++||+||+||++||+||++||||
T Consensus 2 ~~eie~L~~q~~~Le~~l~e~E~~~~~~l~~~---q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkL 78 (86)
T 1x8y_A 2 SCQLSQLQCQLAAKEAKLRDLEDSLARERDTS---RRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKL 78 (86)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 27689999999999999999999899899999---999988999999999999999899999998888469899999888
Q ss_pred HHHHHHHH
Q ss_conf 48898884
Q 005601 303 LDFERRRL 310 (688)
Q Consensus 303 LEgEE~RL 310 (688)
|+||+.||
T Consensus 79 LEGEe~Rl 86 (86)
T 1x8y_A 79 LEGEEERL 86 (86)
T ss_dssp HHHHHCC-
T ss_pred HCCCCCCC
T ss_conf 73774569
No 4
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=1.00 E-value=1 Score=134.88 Aligned_cols=85 Identities=19% Similarity=0.257 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87599999986634889999999988997440478999999999999999999999999999998888666759999742
Q 005601 223 KLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRD 302 (688)
Q Consensus 223 ~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~El~rLR~EMe~QL~EYQdLlDiKvaLDlEIaAYrKL 302 (688)
..+|+.+++++.+++++++++|.....+...+ ...+..+|.++.++|.+|+.|+.+||+||+||++||+||++||||
T Consensus 11 ~~~~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~---q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrkL 87 (95)
T 3mov_A 11 ENLYFQGQKESRACLERIQELEDLLAKEKDNS---RRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKL 87 (95)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 65899999999999999999999899999999---989999999998889999998889999988999899999999888
Q ss_pred HHHHHHHH
Q ss_conf 48898884
Q 005601 303 LDFERRRL 310 (688)
Q Consensus 303 LEgEE~RL 310 (688)
|+||+.||
T Consensus 88 LEGEe~RL 95 (95)
T 3mov_A 88 LEGEEERL 95 (95)
T ss_dssp HCCCC---
T ss_pred HCCCCCCC
T ss_conf 75686689
No 5
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=1.00 E-value=1 Score=133.86 Aligned_cols=83 Identities=17% Similarity=0.267 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 59999998663488999999998899744047899999999999999999999999999999888866675999974248
Q 005601 225 KLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLD 304 (688)
Q Consensus 225 KL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~El~rLR~EMe~QL~EYQdLlDiKvaLDlEIaAYrKLLE 304 (688)
.|..+++++..+++.++++|.....+...+ ...+..+|.++.++|.+|+.|+.+||+||+||++||+||++|||||+
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~~~~---q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLLE 78 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEAANY---QDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLE 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 089999999999999999998888889999---88899899999999999999999999999788866999999988881
Q ss_pred HHHHHH
Q ss_conf 898884
Q 005601 305 FERRRL 310 (688)
Q Consensus 305 gEE~RL 310 (688)
||+.||
T Consensus 79 GEe~Rl 84 (84)
T 1gk4_A 79 GEESRI 84 (84)
T ss_dssp C-----
T ss_pred CCCCCC
T ss_conf 774459
No 6
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=1.00 E-value=1 Score=117.49 Aligned_cols=64 Identities=20% Similarity=0.311 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9889974404789999999999999999999999999999988886667599997424889888467
Q 005601 246 QVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKA 312 (688)
Q Consensus 246 qL~~Er~~s~~~~k~l~~lE~El~rLR~EMe~QL~EYQdLlDiKvaLDlEIaAYrKLLEgEE~RLkg 312 (688)
+|+.|+..+ ...+..+|.++.++|.+|+.|+.|||+||+||++||+||++|||||+||+.||.-
T Consensus 2 ~l~~e~~~~---~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLEGEe~Rl~~ 65 (74)
T 2xv5_A 2 GSARERDTS---RRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGEEERLRL 65 (74)
T ss_dssp CHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 078999999---9999989999999999999999999999999997799999999998167525688
No 7
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=1.00 E-value=1 Score=108.76 Aligned_cols=56 Identities=21% Similarity=0.213 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78999999999999999999999999999998888666759999742488988846
Q 005601 256 SWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLK 311 (688)
Q Consensus 256 ~~~k~l~~lE~El~rLR~EMe~QL~EYQdLlDiKvaLDlEIaAYrKLLEgEE~RLk 311 (688)
+....+..++.++.++|.+|+.|+++||+||+||++||+||++|||||+||+.||.
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLEgEe~rl~ 59 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLEGEESRIS 59 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 89999998999999999999998889999999999769999999989804742559
No 8
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=85.62 Aligned_cols=72 Identities=21% Similarity=0.226 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999998999889999988789997787999999998798678799988885988999986699997424
Q 005601 90 QLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLR 161 (688)
Q Consensus 90 EleELk~~L~kKeKEL~~ae~~~~~~Es~ineLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqL 161 (688)
++.+|+..+...+..+..++.....++...+.+...+.........++..+..+..++.+|+.++.+....+
T Consensus 865 eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~el 936 (1184)
T 1i84_S 865 ELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARI 936 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999999999999999999999999999999999999999999
No 9
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=83.57 Aligned_cols=89 Identities=17% Similarity=0.117 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998867799888759999998663488999999998899744047899999999999999999999999999999888
Q 005601 210 IAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKV 289 (688)
Q Consensus 210 EElke~R~RIEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~El~rLR~EMe~QL~EYQdLlDiK 289 (688)
.++...+..++.+..++..++.....++.++..|+.++...+.......+.+..++.++.++..+++........+-..+
T Consensus 955 ~el~~L~~eleele~~l~~l~~e~~~le~~l~~l~~el~~lee~l~~l~~e~~~le~~i~~l~~~l~~~e~k~~~lek~~ 1034 (1184)
T 1i84_S 955 QQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLK 1034 (1184)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999888888999999999999999988878999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q ss_conf 866675999
Q 005601 290 SGLELDILA 298 (688)
Q Consensus 290 vaLDlEIaA 298 (688)
..|.-+|..
T Consensus 1035 ~~le~el~e 1043 (1184)
T 1i84_S 1035 NKHESMISE 1043 (1184)
T ss_dssp ---------
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 10
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=1.00 E-value=1 Score=59.75 Aligned_cols=45 Identities=27% Similarity=0.349 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 345556665334588888654213222011023778996598799999999
Q 005601 33 SLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESV 83 (688)
Q Consensus 33 slDRVR~LE~ENsrLr~QIes~eetv~tltrEvs~IK~lYEsEL~DARklL 83 (688)
-+|+||+||.+|..|..+|.... .+..+++..+||++|.++|+.+
T Consensus 21 yIdKVR~LEqqN~~Le~~i~~l~------~~~~~~~~~~ye~~i~~Lr~~i 65 (93)
T 3s4r_A 21 LIDKVRFLEQQNKILLAELEQLK------GQGKSRLGDLYEEEMRELRRQV 65 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999899999999999999985------2368983888999999999999
Done!