Query 005601
Match_columns 688
No_of_seqs 52 out of 54
Neff 2.9
Searched_HMMs 13730
Date Tue Mar 26 18:05:32 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005601.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_2107-2111//hhsearch_scop/005601hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gs9a_ a.24.1.1 (A:) Apolipop 12.9 24 0.0017 10.8 9.2 23 83-105 8-30 (144)
2 d1gqea_ e.38.1.1 (A:) Polypept 9.3 32 0.0023 9.9 14.6 61 215-277 4-66 (362)
3 d2gqea1 g.41.11.1 (A:3-31) Nuc 8.2 37 0.0027 9.5 0.4 11 537-547 1-11 (29)
4 d1lvfa_ a.47.2.1 (A:) Syntaxin 7.3 43 0.0031 9.0 7.9 62 212-277 44-105 (106)
5 d1i4da_ a.238.1.2 (A:) Arfapti 5.9 57 0.0041 8.1 23.5 17 238-254 138-154 (200)
6 d1fxka_ a.2.5.1 (A:) Prefoldin 5.7 60 0.0044 8.0 7.8 36 116-151 7-42 (107)
7 d1f5na1 a.114.1.1 (A:284-583) 5.4 64 0.0047 7.8 21.6 27 258-284 217-243 (300)
8 d1urua_ a.238.1.1 (A:) Amphiph 5.2 68 0.0049 7.6 19.4 198 101-309 10-217 (217)
9 d1sz2a1 c.55.1.7 (A:3-321) Glu 4.4 62 0.0045 7.9 -0.6 20 17-37 51-70 (319)
10 d1vcsa1 a.47.2.1 (A:8-96) Vesi 4.0 92 0.0067 6.6 6.1 84 72-158 3-87 (89)
No 1
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=12.89 E-value=24 Score=10.80 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99989999999999989998899
Q 005601 83 VSISYLHQLKVLRDMLDAKQKEL 105 (688)
Q Consensus 83 L~kk~~~EleELk~~L~kKeKEL 105 (688)
+...||+=+..|+.+.+..-..+
T Consensus 8 ~~d~f~~y~~~l~~~a~~~~~~l 30 (144)
T d1gs9a_ 8 ALGRFWDYLRWVQTLSEQVQEEL 30 (144)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99899999999987489999999
No 2
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=9.27 E-value=32 Score=9.95 Aligned_cols=61 Identities=11% Similarity=0.161 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 867799888759999998--663488999999998899744047899999999999999999999
Q 005601 215 SSLQVESLKLKLDETRER--LVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELES 277 (688)
Q Consensus 215 ~R~RIEsL~sKL~dLe~~--n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~El~rLR~EMe~ 277 (688)
.+.+|..|..+|..++.. ...+..|+.+||.+|...-.+. ..+....+-+|+..|+..+..
T Consensus 4 l~~~i~eL~~rl~~Lr~~fDld~kk~Rl~ELE~~lsdP~fW~--D~~kAqkl~KE~s~L~~iVe~ 66 (362)
T d1gqea_ 4 VNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWN--EPERAQALGKERSSLEAVVDT 66 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHSGGGGG--SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHH--CHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999999999977697989999999999863971444--999999999999999999999
No 3
>d2gqea1 g.41.11.1 (A:3-31) Nuclear pore complex protein nup153 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.23 E-value=37 Score=9.45 Aligned_cols=11 Identities=45% Similarity=1.129 Sum_probs=7.5
Q ss_pred CCCCCCCCCCC
Q ss_conf 02322114699
Q 005601 537 VAGSWACSTAP 547 (688)
Q Consensus 537 vagswa~~t~p 547 (688)
|.|||-|.+--
T Consensus 1 v~GsWeC~~C~ 11 (29)
T d2gqea1 1 VIGTWDCDTCL 11 (29)
T ss_dssp CCCCEECSSSC
T ss_pred CCCEEECCCEE
T ss_conf 95564889448
No 4
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=7.34 E-value=43 Score=8.99 Aligned_cols=62 Identities=10% Similarity=0.249 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998867799888759999998663488999999998899744047899999999999999999999
Q 005601 212 EKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELES 277 (688)
Q Consensus 212 lke~R~RIEsL~sKL~dLe~~n~ale~RIReLE~qL~~Er~~s~~~~k~l~~lE~El~rLR~EMe~ 277 (688)
-++++.-+.++.-+|++|+....+.++--.-- ..=..|-.++ +.-+.....+|..|++.|..
T Consensus 44 ~~eL~~~l~siewdL~dLe~av~~ve~np~kf-~l~~~ei~~R---r~fi~~~~~~I~~~~~~l~~ 105 (106)
T d1lvfa_ 44 TNELRNNLRSIEWDLEDLDETISIVEANPRKF-NLDATELSIR---KAFITSTRQIVRDMKDQMSA 105 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSGGGG-TCCHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHC-CCCHHHHHHH---HHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999968999999999998497734-9999999999---99999999999999998745
No 5
>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.93 E-value=57 Score=8.14 Aligned_cols=17 Identities=0% Similarity=0.044 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 89999999988997440
Q 005601 238 NKVRLLETQVCKEQNVS 254 (688)
Q Consensus 238 ~RIReLE~qL~~Er~~s 254 (688)
.++...|..+..-+..|
T Consensus 138 ~kl~~ae~~~~~a~~~f 154 (200)
T d1i4da_ 138 GRLESAQATFQAHRDKY 154 (200)
T ss_dssp ---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 46899999999999999
No 6
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=5.68 E-value=60 Score=7.97 Aligned_cols=36 Identities=11% Similarity=0.172 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 778799999999879867879998888598899998
Q 005601 116 KHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 151 (688)
Q Consensus 116 Es~ineLearLsaa~sdrk~aeeelkelkaei~eLe 151 (688)
-..|..+...+....+.+..++..+.+...-+.+|+
T Consensus 7 ~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~ 42 (107)
T d1fxka_ 7 LAQFQQLQQQAQAISVQKQTVEMQINETQKALEELS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999987
No 7
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.39 E-value=64 Score=7.76 Aligned_cols=27 Identities=11% Similarity=0.152 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999
Q 005601 258 KKRVEELENEIKKLREELESEKAAREV 284 (688)
Q Consensus 258 ~k~l~~lE~El~rLR~EMe~QL~EYQd 284 (688)
......++....++...|+.+...+++
T Consensus 217 ~~~~~~l~~~~~~~~~~~e~~~~~~ee 243 (300)
T d1f5na1 217 QASAKMLHEMQRKNEQMMEQKERSYQE 243 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999
No 8
>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=5.16 E-value=68 Score=7.58 Aligned_cols=198 Identities=12% Similarity=0.058 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 98899999887899977879999999987986787999888859889999866999974244532313999999999999
Q 005601 101 KQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQ 180 (688)
Q Consensus 101 KeKEL~~ae~~~~~~Es~ineLearLsaa~sdrk~aeeelkelkaei~eLe~qLee~RkqLEVDlEN~EakLqqALqeLR 180 (688)
.+.+......+...++..++.|...+.......+.+-.........+.++-......-..+..-......-...-...++
T Consensus 10 ~D~~fe~~~~~~~~~e~~l~~l~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (217)
T d1urua_ 10 ADEIFDDHLNNFNRQQASANRLQKEFNNYIRCVRAAQAASKTLMDSVCEIYEPQWSGYDALQAQTGASESLWADFAHKLG 89 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 03889999999999999999999999999999999999999999999997566762577999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999998534049999996999999999999999886779988875999999866--348899999999889974404789
Q 005601 181 LETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLV--TSDNKVRLLETQVCKEQNVSASWK 258 (688)
Q Consensus 181 ~Qa~ee~kr~~Daqlr~nReE~~~a~kaqEElke~R~RIEsL~sKL~dLe~~n~--ale~RIReLE~qL~~Er~~s~~~~ 258 (688)
.. .=.-++.+...-..+..+.......+.-.+.+..++..+..+.. ....++..++..+...+..| .
T Consensus 90 ~~--------v~~pL~~~~~~~~~~~~~~kkr~~~~~dyd~~~~~l~k~~~k~~~~~~~~~l~~~e~~~~~a~~~f---e 158 (217)
T d1urua_ 90 DQ--------VLIPLNTYTGQFPEMKKKVEKRNRKLIDYDGQRHSFQNLQANANKRKDDVKLTKGREQLEEARRTY---E 158 (217)
T ss_dssp TT--------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCBTTBCCTTTTCHHHHHHHHHHH---H
T ss_pred HH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH---H
T ss_conf 99--------999999999986899999999999999999999999998742145420212677999999999999---9
Q ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999--------99999999999988886667599997424889888
Q 005601 259 KRVEELENEIKKLREE--------LESEKAAREVAWAKVSGLELDILAATRDLDFERRR 309 (688)
Q Consensus 259 k~l~~lE~El~rLR~E--------Me~QL~EYQdLlDiKvaLDlEIaAYrKLLEgEE~R 309 (688)
..-..+-.+|.++-.. |..-....-..+---..+=-.+..|..-|.-+.+|
T Consensus 159 ~~~~~l~~el~~~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~l~~~~~~l~~~~~~ 217 (217)
T d1urua_ 159 ILNTELHDELPALYDSRILFLVTNLQTLFATEQVFHNETAKIYSELEAIVDKLATESQR 217 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999978999999999999999999999999999999999876776558
No 9
>d1sz2a1 c.55.1.7 (A:3-321) Glucokinase Glk {Escherichia coli [TaxId: 562]}
Probab=4.43 E-value=62 Score=7.88 Aligned_cols=20 Identities=20% Similarity=0.106 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCHHHH
Q ss_conf 421233346799987534555
Q 005601 17 NKRLKGIGICSPDGPLSLDDF 37 (688)
Q Consensus 17 ~kr~kglgig~~~gpislDRV 37 (688)
.++++++|||.| |||..+..
T Consensus 51 ~~~~~~igI~~p-G~vd~~~~ 70 (319)
T d1sz2a1 51 KVEVKDGCIAIA-CPITGDWV 70 (319)
T ss_dssp CCCCCEEEEEES-SCCCSSEE
T ss_pred CCCCCEEEEECC-CCCCCCCC
T ss_conf 887666999822-58778764
No 10
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.04 E-value=92 Score=6.64 Aligned_cols=84 Identities=18% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q ss_conf 59879999999999899999999999899988999998878999778799999999879-86787999888859889999
Q 005601 72 HEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASM-QSCTEANEIMKSQKVTIDEL 150 (688)
Q Consensus 72 YEsEL~DARklL~kk~~~EleELk~~L~kKeKEL~~ae~~~~~~Es~ineLearLsaa~-sdrk~aeeelkelkaei~eL 150 (688)
||.+...+..-+..++ ...-.+.. +.+..-+..+++..-+.+..+...+-.+...- +.|..+..-++.-+.++.+|
T Consensus 3 YE~~y~~l~a~i~~kl-~~i~~~~g--eerk~~l~~ie~~leEA~ell~qMelEvr~~p~s~R~~~~~klr~Yk~dl~~l 79 (89)
T d1vcsa1 3 YEQDFAVLTAEITSKI-ARVPRLPP--DEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKL 79 (89)
T ss_dssp SHHHHHHHHHHHHHHH-HHGGGSCT--TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8899999999999999-88772884--57889999999768999999999999987498777999999999999999999
Q ss_pred HHHHHHHH
Q ss_conf 86699997
Q 005601 151 KTQLDEER 158 (688)
Q Consensus 151 e~qLee~R 158 (688)
+++|-.+|
T Consensus 80 k~elk~a~ 87 (89)
T d1vcsa1 80 ETDFKRSR 87 (89)
T ss_dssp HHHTHHHH
T ss_pred HHHHHHHC
T ss_conf 99998630
Done!