Query 005602
Match_columns 688
No_of_seqs 374 out of 2864
Neff 6.5
Searched_HMMs 29240
Date Tue Mar 26 18:16:53 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005602.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2107-2111//hhsearch_pdb/005602hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 1.0 1 1 380.0 10.2 263 373-638 3-287 (303)
2 1okc_A ADP, ATP carrier protei 1.0 1 1 374.5 12.5 264 369-637 5-297 (297)
3 2lck_A Mitochondrial uncouplin 1.0 1 1 346.2 6.7 257 258-548 13-288 (303)
4 1okc_A ADP, ATP carrier protei 1.0 1 1 336.1 8.6 256 259-546 20-297 (297)
5 2cmz_A Spike glycoprotein; mem 1.0 1 1 11.9 -0.9 61 94-165 90-150 (423)
6 3ed7_A Tsase, TS, thymidylate 1.0 1 1 11.8 1.9 56 140-200 52-122 (295)
7 3oae_A Late major capsid prote 1.0 1 1 11.8 -4.0 36 46-82 125-160 (428)
8 3iyj_F Major capsid protein L1 1.0 1 1 11.4 -3.8 38 44-82 136-173 (495)
9 3v8h_A TS, tsase, thymidylate 1.0 1 1 11.2 2.0 59 141-204 46-119 (327)
10 2x0s_A Pyruvate phosphate diki 1.0 1 1 10.9 1.9 20 63-82 206-226 (913)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=1.00 E-value=1 Score=380.02 Aligned_cols=263 Identities=21% Similarity=0.306 Sum_probs=240.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------CCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCH
Q ss_conf 99999999999999989199999999870899-----------9984999999999734956333574788872210100
Q 005602 373 EHAFAGALAGVFVSLCLHPVDTVKTVIQSCHT-----------EQKSIVYIGRSIVSERGLTGLYRGIASNIASSAPISA 441 (688)
Q Consensus 373 ~~~iAGa~Ag~is~ii~~PlE~IKtRlQ~~~~-----------~~~s~~~~~~~I~k~eGi~gLYrG~~~tllr~~~~sa 441 (688)
..++||++||+++.++++|+|++|+|+|++.. .++++++++++|+++||+++||||+.+++++.+++.+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHCCCHHHHHHHHHHHH
T ss_conf 16996999999789990949999999996200245432356777888999999999862889998687899999999988
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCC------CCCCCHHHHHHHHHHCCCC
Q ss_conf 2446544100235799997611478998653211363036404321012432167------5655146798999820643
Q 005602 442 VYAFTYESVKGALLPHLPKEFHSLAHCTAGGCASVATSFIFTPSERIKQQMQVGS------RYHNCWNALVGIIKNGGLH 515 (688)
Q Consensus 442 i~f~~Ye~lk~~l~~~~~~~~~~~~~~~aG~iAg~~s~~it~PlDvIKtRlQ~~~------~y~~~~~~~~~I~r~eGi~ 515 (688)
++|.+||.+|+.+..... ..+....+++|++||+++.++++|+|++|+|+|++. .|.+.++++++|+++||++
T Consensus 83 i~f~~ye~~k~~~~~~~~-~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~ 161 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGSE-HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIR 161 (303)
T ss_dssp HTTTHHHHHHHHHSCCCS-SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCHH
T ss_conf 999889999999853776-7767999999999999999992909999999962666577777887999999999842844
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-----CCCC
Q ss_conf 33323311103434330358999999999852489999998749999999999665532125421224888-----8889
Q 005602 516 SLYAGWGAVLCRNVPHSIVKFYTYESLKQMMLPSLKPGAQPNTIETLICGGVAGSTAALFTTPFDVIPGST-----SQYS 590 (688)
Q Consensus 516 gLyrGl~p~llr~~p~~~i~f~~YE~lk~~l~~~~~~~~~~~~~~~~~aG~lAG~~as~iT~PlDvIk~~~-----~~y~ 590 (688)
|||||+.|++++.+|..+++|.+||.+|+.+.+.. ....+....+++|++||++++++++|+||||++. ..|.
T Consensus 162 glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~--~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~~y~ 239 (303)
T 2lck_A 162 GLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN--LMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYH 239 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT--SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCC
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCC
T ss_conf 50177638999999999899999999999997546--8887659999999999999998739999999999864566668
Q ss_pred CHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899999999985081213245889999999979889999999999861
Q 005602 591 SVYHALQEIGKREGLKGLYRGLIPRLVMYMSQGALFFASYEFFKGVFS 638 (688)
Q Consensus 591 s~~~~~~~I~r~EGi~gLYrGl~p~llr~ip~~~i~f~~YE~lk~~l~ 638 (688)
++++|+++|+++||++|||||+.|++++.+|..+++|.+||.+|+++.
T Consensus 240 ~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~ 287 (303)
T 2lck_A 240 SAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALM 287 (303)
T ss_dssp SHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 799999999997085786666999999998678889999999999998
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=1.00 E-value=1 Score=374.53 Aligned_cols=264 Identities=20% Similarity=0.313 Sum_probs=234.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------CCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 446999999999999999989199999999870899--------998499999999973495633357478887221010
Q 005602 369 LAKQEHAFAGALAGVFVSLCLHPVDTVKTVIQSCHT--------EQKSIVYIGRSIVSERGLTGLYRGIASNIASSAPIS 440 (688)
Q Consensus 369 l~~~~~~iAGa~Ag~is~ii~~PlE~IKtRlQ~~~~--------~~~s~~~~~~~I~k~eGi~gLYrG~~~tllr~~~~s 440 (688)
++.+..+++|++||+++.++++|+|++|||+|++.. .++++++++++|+++||+++||||+.+++++.++..
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHEECCCHHHHHHHHHHH
T ss_conf 89999999999999999896584999999997065545556665634499999999861461203266679999997788
Q ss_pred HHHHHHHHHHCCCCCCC-CCCC---CCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCC-------CCCCCHHHHHHHH
Q ss_conf 02446544100235799-9976---11478998653211363036404321012432167-------5655146798999
Q 005602 441 AVYAFTYESVKGALLPH-LPKE---FHSLAHCTAGGCASVATSFIFTPSERIKQQMQVGS-------RYHNCWNALVGII 509 (688)
Q Consensus 441 ai~f~~Ye~lk~~l~~~-~~~~---~~~~~~~~aG~iAg~~s~~it~PlDvIKtRlQ~~~-------~y~~~~~~~~~I~ 509 (688)
+++|.+||.+|+.+... .... ......+++|++||+++.++++|+|+||+|+|++. .|.++++++++|+
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~ 164 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIF 164 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99999999999996114576530378999999999999999999909499999998301357886757898999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC---
Q ss_conf 82064333323311103434330358999999999852489999998749999999999665532125421224888---
Q 005602 510 KNGGLHSLYAGWGAVLCRNVPHSIVKFYTYESLKQMMLPSLKPGAQPNTIETLICGGVAGSTAALFTTPFDVIPGST--- 586 (688)
Q Consensus 510 r~eGi~gLyrGl~p~llr~~p~~~i~f~~YE~lk~~l~~~~~~~~~~~~~~~~~aG~lAG~~as~iT~PlDvIk~~~--- 586 (688)
++||++|||||+.|++++.+|..+++|.+||.+|+.+.+. ...+.+..+++|++||++++++++|+||||++.
T Consensus 165 ~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~----~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~ 240 (297)
T 1okc_A 165 KSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP----KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQ 240 (297)
T ss_dssp HHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG----GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
T ss_conf 8413888407861888879999999999999999985467----775389999999999999999659199999999416
Q ss_pred -------CCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -------888989999999998508121324588999999997988999999999986
Q 005602 587 -------SQYSSVYHALQEIGKREGLKGLYRGLIPRLVMYMSQGALFFASYEFFKGVF 637 (688)
Q Consensus 587 -------~~y~s~~~~~~~I~r~EGi~gLYrGl~p~llr~ip~~~i~f~~YE~lk~~l 637 (688)
..|.++++|+++|+++||++|||||+.|++++. +..+++|.+||.+|+++
T Consensus 241 ~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 241 SGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp TTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHH-CCCEEEEHHHHHHHHHC
T ss_conf 7778877777889999999999729575745657898731-32304641799897439
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=1.00 E-value=1 Score=346.19 Aligned_cols=257 Identities=20% Similarity=0.267 Sum_probs=229.1
Q ss_pred CCCCCCCCCHHHHHHHHCCCC------------CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCHHHHH
Q ss_conf 520778787034433442688------------89870578999986310147633451000012330011221022559
Q 005602 258 LSKSKGQSSCFNAKLMMSTRT------------TKSLLSDYFLKDVSDMKEDCDVTRQPCSSLCADYCINSVASSNGTCE 325 (688)
Q Consensus 258 ~~~~~~~~PLD~vKtRmQ~~~------------~~~~~~~~~~~~l~~~g~~~GlyRGl~p~L~~~~~~~~~a~~F~~Ye 325 (688)
+......+|||++|+|||.+. .+++..+++.++++++| ++|||||+.+++++.++++++ +|++||
T Consensus 13 ~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG-~~glyrG~~~~l~~~~~~~~i--~f~~ye 89 (303)
T 2lck_A 13 CIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEG-PRSLYNGLVAGLQRQMSFASV--RIGLYD 89 (303)
T ss_dssp HHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHC-HHHHHSSHHHHHHHHHHHHHH--TTTHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHC-HHHHHCCCHHHHHHHHHHHHH--HHHHHH
T ss_conf 97899909499999999962002454323567778889999999998628-899986878999999999889--998899
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-
Q ss_conf 9996522346765320368754211111002489988888884446999999999999999989199999999870899-
Q 005602 326 KCRHLMDDDALLENKRNQSDKNVVEDENKMEFHSPKTEKPHLSLAKQEHAFAGALAGVFVSLCLHPVDTVKTVIQSCHT- 404 (688)
Q Consensus 326 ~~k~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iAGa~Ag~is~ii~~PlE~IKtRlQ~~~~- 404 (688)
.+|..+.+. .+ ..+....+++|++||+++.++++|+|++|+|+|++..
T Consensus 90 ~~k~~~~~~-------------------------~~------~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~ 138 (303)
T 2lck_A 90 SVKQFYTKG-------------------------SE------HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA 138 (303)
T ss_dssp HHHHHHSCC-------------------------CS------SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC
T ss_pred HHHHHHHCC-------------------------CC------CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC
T ss_conf 999998537-------------------------76------77679999999999999999929099999999626665
Q ss_pred ----CCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCEE
Q ss_conf ----9984999999999734956333574788872210100244654410023579999761147899865321136303
Q 005602 405 ----EQKSIVYIGRSIVSERGLTGLYRGIASNIASSAPISAVYAFTYESVKGALLPHLPKEFHSLAHCTAGGCASVATSF 480 (688)
Q Consensus 405 ----~~~s~~~~~~~I~k~eGi~gLYrG~~~tllr~~~~sai~f~~Ye~lk~~l~~~~~~~~~~~~~~~aG~iAg~~s~~ 480 (688)
.+.+.++++++|+++||+++||||+.+++++.+++.+++|.+||.+|+.+........+....+++|++||+++++
T Consensus 139 ~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~ 218 (303)
T 2lck_A 139 GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTV 218 (303)
T ss_dssp CCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 77777887999999999842844501776389999999998999999999999975468887659999999999999998
Q ss_pred EEECCCCCHHHHHCCC--CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 6404321012432167--5655146798999820643333233111034343303589999999998524
Q 005602 481 IFTPSERIKQQMQVGS--RYHNCWNALVGIIKNGGLHSLYAGWGAVLCRNVPHSIVKFYTYESLKQMMLP 548 (688)
Q Consensus 481 it~PlDvIKtRlQ~~~--~y~~~~~~~~~I~r~eGi~gLyrGl~p~llr~~p~~~i~f~~YE~lk~~l~~ 548 (688)
+++|+|+||+|+|++. .|.++++++++|+++||++|||||+.|+++|.+|..+++|.+||.+|+.+..
T Consensus 219 ~~~P~dvvktrlq~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 219 IASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp HHHHHHHHHHHHTTCCSSSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7399999999998645666687999999999970857866669999999986788899999999999987
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=1.00 E-value=1 Score=336.11 Aligned_cols=256 Identities=15% Similarity=0.193 Sum_probs=220.1
Q ss_pred CCCCCCCCHHHHHHHHCCCC---------CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 20778787034433442688---------898705789999863101476334510000123300112210225599996
Q 005602 259 SKSKGQSSCFNAKLMMSTRT---------TKSLLSDYFLKDVSDMKEDCDVTRQPCSSLCADYCINSVASSNGTCEKCRH 329 (688)
Q Consensus 259 ~~~~~~~PLD~vKtRmQ~~~---------~~~~~~~~~~~~l~~~g~~~GlyRGl~p~L~~~~~~~~~a~~F~~Ye~~k~ 329 (688)
......+|||++|+|||.+. .+++..+++.++++++| ++|||||+.++++..++++++ +|++||.+|.
T Consensus 20 ~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG-~~glyrG~~~~l~~~~~~~~~--~f~~ye~~k~ 96 (297)
T 1okc_A 20 ISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQG-FLSFWRGNLANVIRYFPTQAL--NFAFKDKYKQ 96 (297)
T ss_dssp HHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHC-GGGGGTTTHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCC-HHHEECCCHHHHHHHHHHHHH--HHHHHHHHHH
T ss_conf 9989658499999999706554555666563449999999986146-120326667999999778899--9999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----
Q ss_conf 522346765320368754211111002489988888884446999999999999999989199999999870899-----
Q 005602 330 LMDDDALLENKRNQSDKNVVEDENKMEFHSPKTEKPHLSLAKQEHAFAGALAGVFVSLCLHPVDTVKTVIQSCHT----- 404 (688)
Q Consensus 330 ~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iAGa~Ag~is~ii~~PlE~IKtRlQ~~~~----- 404 (688)
.+... . + ............+++|++||+++.++++|+|++|+|+|++..
T Consensus 97 ~~~~~-----~--------------------~-~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~ 150 (297)
T 1okc_A 97 IFLGG-----V--------------------D-RHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQ 150 (297)
T ss_dssp HHHTT-----C--------------------C-TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTT
T ss_pred HHCCC-----C--------------------C-CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCC
T ss_conf 96114-----5--------------------7-65303789999999999999999999094999999983013578867
Q ss_pred -CCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf -9984999999999734956333574788872210100244654410023579999761147899865321136303640
Q 005602 405 -EQKSIVYIGRSIVSERGLTGLYRGIASNIASSAPISAVYAFTYESVKGALLPHLPKEFHSLAHCTAGGCASVATSFIFT 483 (688)
Q Consensus 405 -~~~s~~~~~~~I~k~eGi~gLYrG~~~tllr~~~~sai~f~~Ye~lk~~l~~~~~~~~~~~~~~~aG~iAg~~s~~it~ 483 (688)
.+.++++++++|+++||+++||||+.+++++.+|..+++|.+||.+|+.+... ...+....+++|++||++++++++
T Consensus 151 ~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~--~~~~~~~~~~~g~~ag~~a~~~t~ 228 (297)
T 1okc_A 151 REFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP--KNVHIIVSWMIAQTVTAVAGLVSY 228 (297)
T ss_dssp CSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG--GCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 578989999999998413888407861888879999999999999999985467--775389999999999999999659
Q ss_pred CCCCCHHHHHCCC-------CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 4321012432167-------56551467989998206433332331110343433035899999999985
Q 005602 484 PSERIKQQMQVGS-------RYHNCWNALVGIIKNGGLHSLYAGWGAVLCRNVPHSIVKFYTYESLKQMM 546 (688)
Q Consensus 484 PlDvIKtRlQ~~~-------~y~~~~~~~~~I~r~eGi~gLyrGl~p~llr~~p~~~i~f~~YE~lk~~l 546 (688)
|+|+||+|+|++. .|.++++++++|+++||++|||||+.|+++|. +..+++|.+||.+|+++
T Consensus 229 P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 229 PFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHH-CCCEEEEHHHHHHHHHC
T ss_conf 1999999994167778877777889999999999729575745657898731-32304641799897439
No 5
>2cmz_A Spike glycoprotein; membrane, lipoprotein, transmembrane, envelope protein, membrane protein; HET: PE4; 2.40A {Vesicular stomatitis indiana virus} SCOP: e.76.1.2 PDB: 2j6j_A*
Probab=1.00 E-value=1 Score=11.93 Aligned_cols=61 Identities=13% Similarity=0.220 Sum_probs=42.2
Q ss_pred CCHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHH
Q ss_conf 300333502333335742104899830352258988767555653201111110210036872024699999
Q 005602 94 SECKKEVLRNLDKEENAWVPLSTDSKYFCVDVSSAGQFSPMVQPNLEFLKVTQKMSVFDSCSKKFAHSTFWT 165 (688)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (688)
.+|++.+-.+-.++- -.-||+.+. ....+.......|..|+..--.+|||++++++++|.-
T Consensus 90 ~eC~~ai~~~~~G~~--------~~P~FPp~~---C~w~svtt~~~~~i~i~ph~V~lDpY~~~~~D~~F~g 150 (423)
T 2cmz_A 90 EQCKESIEQTKQGTW--------LNPGFPPQS---CGYATVTDAEAVIVQVTPHHVLVDEYTGEWVDSQFIN 150 (423)
T ss_dssp HHHHHHHHHHHTTCC--------CCCCSCCCC---CCTTSEEEEEEEEEEEEECCEEEETTTTEEECTTBGG
T ss_pred HHHHHHHHHHHCCCC--------CCCCCCCCC---CCCCCCEEEEEEEEEEECCCCEECCCCCEEECCCCCC
T ss_conf 999999999864884--------689789855---5565110546899999723414718788160886789
No 6
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase, nucleotide biosynthesis; 1.56A {Homo sapiens} SCOP: d.117.1.1 PDB: 3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A 3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 4gyh_A 4h1i_A 2rd8_A* 2rda_A 3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* ...
Probab=1.00 E-value=1 Score=11.83 Aligned_cols=56 Identities=21% Similarity=0.323 Sum_probs=31.7
Q ss_pred CCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCC------CCCCC-CCCCC----CCCC----CCCCCCHHHHCCC
Q ss_conf 0111111021003687202469999997338877------75100-14866----6764----2333640110125
Q 005602 140 EFLKVTQKMSVFDSCSKKFAHSTFWTFLRSGASL------SNDTC-VWGLA----SAGI----PYQLGNVHRWMTE 200 (688)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~----~~~~----~~~~~~~~~~~~~ 200 (688)
+||-+|.|-.-+. --++.++| ||++.++. -..-| +|+.. +.|. .-++|.+|+.--.
T Consensus 52 ~fPllTtKkv~~k----~ii~ELLW-fl~G~tn~~~L~~~gv~IWd~~~~~~~~~~~g~~~~e~GdlGpvYG~QwR 122 (295)
T 3ed7_A 52 EFPLLTTKRVFWK----GVLEELLW-FIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWR 122 (295)
T ss_dssp CCCCCTTTTCCHH----HHHHHHHH-HHTTCCBGGGGCC-----CCSCSSCCGGGGSCHHHHHTTBCCSCTHHHHH
T ss_pred CCCEEECCCCCHH----HHHHHHHH-HHHCCCCHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHH
T ss_conf 8511102654578----89999999-98589518999974995115543555543026775678967665535522
No 7
>3oae_A Late major capsid protein L1; jelly roll, receptor HSPG, virus capsid, VIR protein; HET: JHM IDS; 2.80A {Human papillomavirus} PDB: 2r5h_A 2r5j_A 2r5k_A
Probab=1.00 E-value=1 Score=11.81 Aligned_cols=36 Identities=8% Similarity=0.169 Sum_probs=22.7
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 3333577899984444878999999997520221112
Q 005602 46 SKQTNKKAEPKSPMILSTAQLIAAVGQLWDSANRLAI 82 (688)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (688)
+.|.|-..+||-.|++--- -.-|+|+-||.+++|..
T Consensus 125 D~R~nvs~DpKQ~QlfIVG-C~P~~GehWd~a~~C~~ 160 (428)
T 3oae_A 125 DNRECISMDYKQTQLCLIG-CKPPIGEHWGKGSPCTQ 160 (428)
T ss_dssp CCCEEEEEBCCEEEEEEEE-SSCCEEEEEEECCCCSS
T ss_pred CCCCCCCCCCCCEEEEEEE-CCCCCCCCCCCCCCCCC
T ss_conf 6542656676503599985-35887663666787989
No 8
>3iyj_F Major capsid protein L1; bovine papillomavirus BPV1, single cryo-EM, high resolution, late protein, VIR virus; 4.20A {Bovine papillomavirus type 1}
Probab=1.00 E-value=1 Score=11.36 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=27.4
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 233333577899984444878999999997520221112
Q 005602 44 DNSKQTNKKAEPKSPMILSTAQLIAAVGQLWDSANRLAI 82 (688)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (688)
..+.|.|-..+||-.|++--- -.-|+|+-||.+++|..
T Consensus 136 ~~D~R~nvs~DpKQ~QlfIVG-C~P~~GehWd~a~~C~~ 173 (495)
T 3iyj_F 136 TTDDRKQTGLDAKQQQILLLG-CTPAEGEYWTTARPCVT 173 (495)
T ss_dssp CSCCCEEEEEECCCEEEEEEE-SSCCEEEEEEECCCCSS
T ss_pred CCCCCCCCCCCCCEEEEEEEE-CCCCCCCCCCCCCCCCC
T ss_conf 886651656675402589985-25887663667787989
No 9
>3v8h_A TS, tsase, thymidylate synthase; ssgcid, structural genomics, seattle S genomics center for infectious disease, transferase; HET: CIT; 1.65A {Burkholderia thailandensis}
Probab=1.00 E-value=1 Score=11.19 Aligned_cols=59 Identities=24% Similarity=0.172 Sum_probs=33.6
Q ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCC------CCCCC-CCCCC--------CCCCCCCCCCHHHHCCCCCCC
Q ss_conf 111111021003687202469999997338877------75100-14866--------676423336401101257688
Q 005602 141 FLKVTQKMSVFDSCSKKFAHSTFWTFLRSGASL------SNDTC-VWGLA--------SAGIPYQLGNVHRWMTEKFPA 204 (688)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 204 (688)
||-+|.|-.-| +--++.|+| ||++.++. -..-| +|+.. ...-.-++|.+|+.--...++
T Consensus 46 FPllTTKkv~~----ksii~ELLW-fl~G~tn~~~L~e~gv~IWd~wa~~~~~~ld~~~~~e~GdLGpvYG~QWR~~~a 119 (327)
T 3v8h_A 46 FPAVTTKKLAF----KSAIGELVG-FLRATRSAAEFRALGCKVWDANANENAQWLANPYRRGADDLGDVYGVQWRRWPG 119 (327)
T ss_dssp CCCCCSSCCCH----HHHHHHHHH-HHTTCCBHHHHHHTTCCTTHHHHHTCHHHHTCTTCCSTTBCCSCTHHHHHHEEE
T ss_pred CCCCCCCCCCH----HHHHHHHHH-HHHCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCC
T ss_conf 86112154547----889999999-994896489999839923345303555541244456689787516467540665
No 10
>2x0s_A Pyruvate phosphate dikinase; transferase, tropical parasite; 3.00A {Trypanosoma brucei}
Probab=1.00 E-value=1 Score=10.86 Aligned_cols=20 Identities=35% Similarity=0.331 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHC-CCCCC
Q ss_conf 789999999975202-21112
Q 005602 63 TAQLIAAVGQLWDSA-NRLAI 82 (688)
Q Consensus 63 ~~~~~~~~~~~~~~~-~~~~~ 82 (688)
..||+.||...|.+. ++-++
T Consensus 206 ~~qL~~ai~~vfaSl~t~RAi 226 (913)
T 2x0s_A 206 VMQLFAAIKAVFRSWGNPRAT 226 (913)
T ss_dssp HHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHH
T ss_conf 999999999999873588799
Done!