BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005603
(688 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 2/132 (1%)
Query: 547 TWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISL 606
W +L Y K G +A +KA ++ S +W+ G + Q Y EA+ + +L
Sbjct: 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62
Query: 607 AIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQ 666
++P + + K G I + AL L+P + +AW NLG +G
Sbjct: 63 ELDPRSAEAWYNLGNAYYKQGDYDEAI--EYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 667 QAADYFQAAYEL 678
+A +Y+Q A EL
Sbjct: 121 EAIEYYQKALEL 132
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 547 TWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISL 606
W +L Y K G +A +KA ++ S +W+ G + Q Y EA+ + +L
Sbjct: 71 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130
Query: 607 AIEP 610
++P
Sbjct: 131 ELDP 134
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 578 SPGS----WHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPI 633
PG+ W+ G + Q Y EA+ + +L ++P+ + + K G I
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 634 ARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYEL 678
+ AL L+P N +AW NLG +G +A +Y+Q A EL
Sbjct: 64 --EYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 2/117 (1%)
Query: 547 TWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISL 606
W +L Y K G +A +KA ++ + +W+ G + Q Y EA+ + +L
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 607 AIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEG 663
++P+ + + K G I + AL L+P N +A NLG + +G
Sbjct: 71 ELDPNNAEAWYNLGNAYYKQGDYDEAI--EYYQKALELDPNNAEAKQNLGNAKQKQG 125
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 6/105 (5%)
Query: 578 SPGS----WHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPI 633
PG+ W+ G + Q Y EA+ + +L + P+ + + K G I
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 634 ARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYEL 678
+ AL L P N +AW NLG +G +A +Y+Q A EL
Sbjct: 64 --EYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 2/117 (1%)
Query: 547 TWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISL 606
W +L Y K G +A +KA + + +W+ G + Q Y EA+ + +L
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 607 AIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEG 663
+ P+ + + K G I + AL L P N +A NLG + +G
Sbjct: 71 ELYPNNAEAWYNLGNAYYKQGDYDEAI--EYYQKALELYPNNAEAKQNLGNAKQKQG 125
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 2/134 (1%)
Query: 550 DLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIE 609
DL + LG L +A+ C KA + +W G +F AQ + A+ F ++ ++
Sbjct: 140 DLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD 199
Query: 610 PDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAA 669
P+++ + I+ +L + + A + + AL L P + NL + +G + A
Sbjct: 200 PNFLDAYINLGNVLKE--ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAI 257
Query: 670 DYFQAAYELKLSAP 683
D ++ A EL+ P
Sbjct: 258 DTYRRAIELQPHFP 271
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 581 SWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMN 640
++ G +++ + Q +EA+ + +L ++PD+I I+ A L+ G M A ++
Sbjct: 69 AYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG--DMEGAVQAYVS 126
Query: 641 ALRLEPTNHDAWMNLGLISKMEGSLQQA-ADYFQA 674
AL+ P + +LG + K G L++A A Y +A
Sbjct: 127 ALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Query: 547 TWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISL 606
+ +LA + GS+ +AE C A + S + + Q +EA+ + +L
Sbjct: 273 AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332
Query: 607 AIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLG 656
+ P++ + + A +L + G+ + A A+R+ PT DA+ N+G
Sbjct: 333 EVFPEFAAAHSNLASVLQQQGK--LQEALMHYKEAIRISPTFADAYSNMG 380
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 595 YKEALVSFSI-----SLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNH 649
Y++ L+ +I ++ ++P + + + A L + G S+ A ALRL PT+
Sbjct: 248 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKG--SVAEAEDCYNTALRLCPTHA 305
Query: 650 DAWMNLGLISKMEGSLQQAADYFQAAYEL 678
D+ NL I + +G++++A ++ A E+
Sbjct: 306 DSLNNLANIKREQGNIEEAVRLYRKALEV 334
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 609 EPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQA 668
EPD ++ + I + R + + F A++ P +A+ NLG + K G LQ+A
Sbjct: 29 EPDNTGVLLLLSSIHFQCRR--LDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86
Query: 669 ADYFQAAYELK 679
++++ A LK
Sbjct: 87 IEHYRHALRLK 97
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 2/117 (1%)
Query: 547 TWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISL 606
W++L Y K G A +KA ++ + +W+ G + Q Y++A+ + +L
Sbjct: 11 AWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKAL 70
Query: 607 AIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEG 663
++P+ + K G I AL L+P N A NLG + +G
Sbjct: 71 ELDPNNAKAWYRRGNAYYKQGDYQKAIED--YQKALELDPNNAKAKQNLGNAKQKQG 125
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 581 SWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMN 640
+W G + Q Y++A+ + +L ++P+ + + K G I +
Sbjct: 11 AWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAI--EYYQK 68
Query: 641 ALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYEL 678
AL L+P N AW G +G Q+A + +Q A EL
Sbjct: 69 ALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALEL 106
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/82 (20%), Positives = 36/82 (43%)
Query: 546 ATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSIS 605
+ W +L Y K G A +KA ++ + +W+ G + Q Y++A+ + +
Sbjct: 44 SAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKA 103
Query: 606 LAIEPDYIPSIISTAEILMKLG 627
L ++P+ + + K G
Sbjct: 104 LELDPNNAKAKQNLGNAKQKQG 125
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 581 SWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMN 640
+W+ G + Q Y EA+ + +L ++P+ + + K G I +
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI--EYYQK 68
Query: 641 ALRLEPTNHDAWMNLGLISKMEG 663
AL L+P N +A NLG + +G
Sbjct: 69 ALELDPNNAEAKQNLGNAKQKQG 91
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 618 STAEILMKLG-----RQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYF 672
++AE LG + A + AL L+P N +AW NLG +G +A +Y+
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 673 QAAYEL 678
Q A EL
Sbjct: 67 QKALEL 72
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 547 TWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISL 606
W +L Y K G +A +KA ++ + +W+ G + Q Y EA+ + +L
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 607 AIEPDYIPSIISTAEILMKLGR 628
++P + AE LG
Sbjct: 71 ELDP-------NNAEAKQNLGN 85
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 618 STAEILMKLG-----RQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYF 672
+AE LG + A + AL L+P + +AW NLG +G +A +Y+
Sbjct: 1 GSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 60
Query: 673 QAAYEL 678
Q A EL
Sbjct: 61 QKALEL 66
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 547 TWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISL 606
W +L Y K G +A +KA ++ S +W+ G + Q Y EA+ + +L
Sbjct: 5 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 64
Query: 607 AIEP 610
++P
Sbjct: 65 ELDP 68
>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
Length = 597
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 581 SWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMN 640
+W G+ + ++ EA FS S ++P + P+ I A G I S
Sbjct: 375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAI--SAYTT 432
Query: 641 ALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYEL 678
A RL H ++ LG+ G++ A +Y Q++Y L
Sbjct: 433 AARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470
>pdb|3HYM|B Chain B, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|D Chain D, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|F Chain F, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|H Chain H, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|J Chain J, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|L Chain L, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
Length = 330
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 614 PSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQ 673
P + + + KL + + A + AL L P N + +G I + G+ + A DYF
Sbjct: 237 PLLNNLGHVCRKLKKYAE--ALDYHRQALVLIPQNASTYSAIGYIHSLXGNFENAVDYFH 294
Query: 674 AAYELK 679
A L+
Sbjct: 295 TALGLR 300
>pdb|2HO1|A Chain A, Functional Characterization Of Pseudomonas Aeruginosa Pilf
pdb|2HO1|B Chain B, Functional Characterization Of Pseudomonas Aeruginosa Pilf
Length = 252
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 54/133 (40%)
Query: 551 LATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEP 610
L Y++ G+ A++ KA I+ S + ++F+ + + K A + +LA +
Sbjct: 43 LGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEXEPKLADEEYRKALASDS 102
Query: 611 DYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAAD 670
+ + L + R R + L P + NLGL+S QA +
Sbjct: 103 RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQXKKPAQAKE 162
Query: 671 YFQAAYELKLSAP 683
YF+ + L + P
Sbjct: 163 YFEKSLRLNRNQP 175
>pdb|1IJG|A Chain A, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|B Chain B, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|C Chain C, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|D Chain D, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|E Chain E, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|F Chain F, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|G Chain G, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|H Chain H, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|I Chain I, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|J Chain J, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|K Chain K, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|L Chain L, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1JNB|A Chain A, Connector Protein From Bacteriophage Phi29
pdb|1JNB|B Chain B, Connector Protein From Bacteriophage Phi29
pdb|1JNB|C Chain C, Connector Protein From Bacteriophage Phi29
pdb|1JNB|D Chain D, Connector Protein From Bacteriophage Phi29
pdb|1JNB|E Chain E, Connector Protein From Bacteriophage Phi29
pdb|1JNB|F Chain F, Connector Protein From Bacteriophage Phi29
pdb|1JNB|G Chain G, Connector Protein From Bacteriophage Phi29
pdb|1JNB|H Chain H, Connector Protein From Bacteriophage Phi29
pdb|1JNB|I Chain I, Connector Protein From Bacteriophage Phi29
pdb|1JNB|J Chain J, Connector Protein From Bacteriophage Phi29
pdb|1JNB|K Chain K, Connector Protein From Bacteriophage Phi29
pdb|1JNB|L Chain L, Connector Protein From Bacteriophage Phi29
pdb|1H5W|A Chain A, 2.1a Bacteriophage Phi-29 Connector
pdb|1H5W|B Chain B, 2.1a Bacteriophage Phi-29 Connector
pdb|1H5W|C Chain C, 2.1a Bacteriophage Phi-29 Connector
Length = 309
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 357 VIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDP- 415
V+ +QK E FLGI N+ +K T+ V E +ES FL RE+
Sbjct: 206 VVDKLNAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEAC 265
Query: 416 -EMMYYLGLEHAVQRNVEAAFDYAIM 440
++ GL NV+ F Y I+
Sbjct: 266 EKINELYGL------NVKVKFRYDIV 285
>pdb|3S4O|A Chain A, Protein Tyrosine Phosphatase (Putative) From Leishmania
Major
pdb|3S4O|B Chain B, Protein Tyrosine Phosphatase (Putative) From Leishmania
Major
Length = 167
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 83 YDAALQVFQGIDIVSLT----PRMTRAVVER-TRPLRKHRSKGEKADSVPPPGLMSLHSI 137
YDA L +GID+ S TRAV++ + L ++ ++ SVPPP + +H +
Sbjct: 59 YDATLVKSRGIDVHSWPFDDGAPPTRAVLDSWLKLLDTELARQQEDPSVPPPTI-GVHCV 117
Query: 138 SLLLEAILLKAKSLEELGH 156
+ L A +L A +L E G+
Sbjct: 118 AGLGRAPILVALALVEYGN 136
>pdb|3ZGQ|A Chain A, Crystal Structure Of Human Interferon-induced Protein
Ifit5
pdb|4HOR|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligocytidine
pdb|4HOS|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligouridine
pdb|4HOT|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligoadenine
pdb|4J0U|A Chain A, Crystal Structure Of Ifit5/isg58
Length = 482
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 15/132 (11%)
Query: 548 WQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLA 607
+ DLA +Y + G +AE KA +E + H + ++ + +I
Sbjct: 341 YTDLANMYAEGGQYSNAEDIFRKALRLENITDDHKHQIHYHYGRFQEFHRKSENTAIHHY 400
Query: 608 IE----PDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEG 663
+E D P L KL + NAL ++ + LG + K+EG
Sbjct: 401 LEALKVKDRSPLRTKLTSALKKLS------TKRLCHNALDVQSLS-----ALGFVYKLEG 449
Query: 664 SLQQAADYFQAA 675
+QAA+Y++ A
Sbjct: 450 EKRQAAEYYEKA 461
>pdb|4HOQ|A Chain A, Crystal Structure Of Full-length Human Ifit5
Length = 482
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 15/132 (11%)
Query: 548 WQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLA 607
+ DLA Y + G +AE KA +E + H + ++ + +I
Sbjct: 341 YTDLANXYAEGGQYSNAEDIFRKALRLENITDDHKHQIHYHYGRFQEFHRKSENTAIHHY 400
Query: 608 IE----PDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEG 663
+E D P L KL + NAL ++ + LG + K+EG
Sbjct: 401 LEALKVKDRSPLRTKLTSALKKLS------TKRLCHNALDVQSLS-----ALGFVYKLEG 449
Query: 664 SLQQAADYFQAA 675
+QAA+Y++ A
Sbjct: 450 EKRQAAEYYEKA 461
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 59/132 (44%), Gaps = 6/132 (4%)
Query: 548 WQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISL- 606
+ + A + + L A +KA ++ + +++ G ++ + YKEA F +L
Sbjct: 60 YINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALR 119
Query: 607 -AIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSL 665
+E + ++ T +L+KL + +A +L A+ L + +A G+ EG L
Sbjct: 120 AGMENGDLFYMLGT--VLVKL--EQPKLALPYLQRAVELNENDTEARFQFGMCLANEGML 175
Query: 666 QQAADYFQAAYE 677
+A F A E
Sbjct: 176 DEALSQFAAVTE 187
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,625,925
Number of Sequences: 62578
Number of extensions: 714207
Number of successful extensions: 1839
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1767
Number of HSP's gapped (non-prelim): 72
length of query: 688
length of database: 14,973,337
effective HSP length: 105
effective length of query: 583
effective length of database: 8,402,647
effective search space: 4898743201
effective search space used: 4898743201
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)