Query 005603
Match_columns 688
No_of_seqs 1059 out of 4500
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 02:01:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005603.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005603hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4162 Predicted calmodulin-b 100.0 3.3E-62 7.3E-67 493.7 49.6 678 2-688 40-793 (799)
2 KOG4626 O-linked N-acetylgluco 100.0 2.3E-46 4.9E-51 368.1 31.9 380 192-686 114-493 (966)
3 KOG4626 O-linked N-acetylgluco 100.0 8.5E-44 1.8E-48 350.0 32.4 454 69-666 50-507 (966)
4 TIGR02917 PEP_TPR_lipo putativ 100.0 1.1E-39 2.4E-44 381.3 53.3 579 42-685 268-873 (899)
5 TIGR02917 PEP_TPR_lipo putativ 100.0 7.6E-40 1.7E-44 382.6 50.8 563 41-684 28-602 (899)
6 PRK11447 cellulose synthase su 100.0 1.5E-36 3.3E-41 355.1 58.7 561 44-679 37-741 (1157)
7 PRK11447 cellulose synthase su 100.0 1.3E-36 2.9E-41 355.6 55.5 521 42-652 69-751 (1157)
8 TIGR00990 3a0801s09 mitochondr 100.0 1.2E-33 2.6E-38 311.1 46.9 393 192-681 125-574 (615)
9 TIGR00990 3a0801s09 mitochondr 100.0 2.9E-33 6.2E-38 308.1 48.8 439 69-650 129-577 (615)
10 PRK09782 bacteriophage N4 rece 100.0 2.8E-32 6E-37 304.3 50.1 255 398-686 458-714 (987)
11 KOG2002 TPR-containing nuclear 100.0 1.5E-32 3.2E-37 285.4 40.1 548 51-688 146-755 (1018)
12 KOG2002 TPR-containing nuclear 100.0 6.9E-31 1.5E-35 273.1 42.4 549 49-679 108-710 (1018)
13 PRK15174 Vi polysaccharide exp 100.0 8.2E-31 1.8E-35 287.2 40.2 347 289-687 40-390 (656)
14 PRK09782 bacteriophage N4 rece 100.0 1E-28 2.3E-33 275.8 52.1 252 398-682 493-744 (987)
15 PRK15174 Vi polysaccharide exp 100.0 1.8E-29 3.9E-34 276.7 41.3 347 265-680 55-405 (656)
16 KOG0547 Translocase of outer m 100.0 3.1E-28 6.7E-33 234.9 33.5 395 193-680 114-568 (606)
17 PRK10049 pgaA outer membrane p 100.0 1E-27 2.2E-32 268.6 40.7 422 149-649 23-461 (765)
18 PRK10049 pgaA outer membrane p 100.0 4.2E-26 9.2E-31 255.6 45.7 387 143-616 51-464 (765)
19 KOG0547 Translocase of outer m 100.0 1.9E-24 4.1E-29 208.9 39.1 440 67-650 115-572 (606)
20 KOG1126 DNA-binding cell divis 100.0 1.6E-26 3.6E-31 232.6 25.7 305 327-683 319-625 (638)
21 KOG2003 TPR repeat-containing 99.9 1.6E-24 3.6E-29 206.9 34.6 457 153-683 161-694 (840)
22 KOG1155 Anaphase-promoting com 99.9 2.8E-23 6.2E-28 199.7 39.7 417 192-678 76-495 (559)
23 KOG1173 Anaphase-promoting com 99.9 2.7E-24 5.9E-29 212.0 32.5 487 44-625 25-535 (611)
24 PRK11788 tetratricopeptide rep 99.9 8.1E-24 1.7E-28 221.7 37.9 307 290-643 34-346 (389)
25 KOG1126 DNA-binding cell divis 99.9 4.8E-25 1E-29 222.1 25.6 306 292-650 318-626 (638)
26 KOG2003 TPR repeat-containing 99.9 2.2E-23 4.7E-28 199.3 34.1 488 70-664 204-709 (840)
27 KOG1155 Anaphase-promoting com 99.9 2.4E-22 5.1E-27 193.4 41.2 364 196-648 166-540 (559)
28 PLN03077 Protein ECB2; Provisi 99.9 1.7E-22 3.6E-27 231.8 47.4 488 42-677 229-719 (857)
29 PLN03077 Protein ECB2; Provisi 99.9 1.2E-22 2.7E-27 232.9 45.5 537 44-684 130-692 (857)
30 PRK14574 hmsH outer membrane p 99.9 5.7E-22 1.2E-26 217.6 48.2 452 141-685 34-520 (822)
31 KOG1173 Anaphase-promoting com 99.9 4.6E-23 1E-27 203.4 34.3 442 143-683 51-523 (611)
32 PLN03081 pentatricopeptide (PP 99.9 1.7E-22 3.6E-27 226.3 41.7 456 45-644 97-557 (697)
33 PRK11788 tetratricopeptide rep 99.9 5.1E-23 1.1E-27 215.7 35.4 303 324-677 34-346 (389)
34 KOG2076 RNA polymerase III tra 99.9 7.1E-22 1.5E-26 205.3 42.4 561 44-684 148-855 (895)
35 KOG0495 HAT repeat protein [RN 99.9 4.6E-21 9.9E-26 191.5 42.8 368 282-684 401-788 (913)
36 PRK14574 hmsH outer membrane p 99.9 1.1E-20 2.3E-25 207.6 48.1 491 65-666 32-534 (822)
37 PLN03081 pentatricopeptide (PP 99.9 7.3E-21 1.6E-25 213.0 47.2 458 74-678 94-557 (697)
38 KOG1174 Anaphase-promoting com 99.9 6E-21 1.3E-25 181.0 37.7 272 370-683 232-505 (564)
39 KOG0624 dsRNA-activated protei 99.9 1.2E-21 2.7E-26 181.3 31.6 331 285-655 32-381 (504)
40 PLN03218 maturation of RBCL 1; 99.9 1.4E-18 3E-23 196.3 58.1 430 150-678 446-909 (1060)
41 KOG0548 Molecular co-chaperone 99.9 4.3E-21 9.2E-26 189.1 32.3 209 452-683 226-460 (539)
42 PLN03218 maturation of RBCL 1; 99.9 6.9E-19 1.5E-23 198.8 53.5 398 151-645 380-784 (1060)
43 KOG0495 HAT repeat protein [RN 99.9 1E-19 2.2E-24 182.0 39.5 314 284-654 577-890 (913)
44 KOG0624 dsRNA-activated protei 99.9 3.5E-21 7.7E-26 178.2 27.1 315 320-685 33-377 (504)
45 KOG4162 Predicted calmodulin-b 99.9 2.2E-19 4.9E-24 183.7 41.4 550 50-687 19-758 (799)
46 KOG2076 RNA polymerase III tra 99.9 2.9E-20 6.3E-25 193.4 34.3 361 291-676 139-510 (895)
47 KOG0548 Molecular co-chaperone 99.9 5.2E-20 1.1E-24 181.5 32.6 429 201-674 9-485 (539)
48 PF13429 TPR_15: Tetratricopep 99.9 3.1E-22 6.8E-27 198.5 12.6 264 374-678 12-277 (280)
49 KOG1129 TPR repeat-containing 99.9 1.2E-19 2.6E-24 167.2 26.6 239 419-688 227-468 (478)
50 PF13429 TPR_15: Tetratricopep 99.9 1.3E-21 2.8E-26 194.1 13.7 265 328-643 11-276 (280)
51 PRK12370 invasion protein regu 99.9 1.6E-19 3.4E-24 195.3 30.2 249 398-679 278-536 (553)
52 TIGR00540 hemY_coli hemY prote 99.9 6.4E-19 1.4E-23 183.8 33.4 302 328-678 87-399 (409)
53 KOG1174 Anaphase-promoting com 99.8 5.2E-18 1.1E-22 161.2 30.3 462 74-660 50-516 (564)
54 KOG1129 TPR repeat-containing 99.8 1.7E-19 3.7E-24 166.1 18.8 283 334-659 188-473 (478)
55 KOG1127 TPR repeat-containing 99.8 2.5E-18 5.5E-23 179.7 29.3 382 268-679 474-914 (1238)
56 PRK10747 putative protoheme IX 99.8 2.4E-17 5.2E-22 170.9 36.3 300 328-679 87-391 (398)
57 KOG1127 TPR repeat-containing 99.8 2.1E-17 4.6E-22 172.9 35.4 559 49-682 382-1071(1238)
58 TIGR00540 hemY_coli hemY prote 99.8 1.2E-17 2.7E-22 174.1 33.2 302 293-644 86-399 (409)
59 KOG1125 TPR repeat-containing 99.8 7.9E-19 1.7E-23 174.7 19.5 256 374-670 289-563 (579)
60 PRK12370 invasion protein regu 99.8 1.1E-17 2.5E-22 181.0 30.4 272 294-644 261-535 (553)
61 KOG1125 TPR repeat-containing 99.8 2.3E-19 5.1E-24 178.4 15.5 241 419-682 289-531 (579)
62 PRK11189 lipoprotein NlpI; Pro 99.8 6.2E-18 1.3E-22 167.7 25.8 237 394-664 39-286 (296)
63 KOG1915 Cell cycle control pro 99.8 5.1E-15 1.1E-19 143.5 43.2 345 289-679 205-586 (677)
64 COG3063 PilF Tfp pilus assembl 99.8 1.8E-17 3.9E-22 146.6 24.0 209 415-651 35-243 (250)
65 PRK11189 lipoprotein NlpI; Pro 99.8 1.8E-17 3.9E-22 164.5 25.7 220 429-682 40-269 (296)
66 TIGR02521 type_IV_pilW type IV 99.8 2.9E-17 6.4E-22 158.8 26.6 202 415-644 31-232 (234)
67 PRK10747 putative protoheme IX 99.8 1.8E-16 3.8E-21 164.5 33.7 297 293-645 86-391 (398)
68 TIGR02521 type_IV_pilW type IV 99.8 2.5E-17 5.4E-22 159.3 25.3 201 451-680 32-234 (234)
69 COG2956 Predicted N-acetylgluc 99.8 8.3E-16 1.8E-20 142.2 32.9 280 295-619 39-322 (389)
70 COG3063 PilF Tfp pilus assembl 99.8 3.3E-17 7.2E-22 144.9 22.7 205 451-684 36-242 (250)
71 KOG1156 N-terminal acetyltrans 99.8 7.5E-16 1.6E-20 155.1 33.7 341 292-682 8-438 (700)
72 COG2956 Predicted N-acetylgluc 99.8 3.6E-16 7.9E-21 144.5 28.2 271 374-681 39-314 (389)
73 PLN02789 farnesyltranstransfer 99.8 9.6E-17 2.1E-21 158.3 24.8 221 426-676 48-300 (320)
74 KOG0550 Molecular chaperone (D 99.8 8.9E-17 1.9E-21 153.3 22.2 339 292-674 50-439 (486)
75 KOG1840 Kinesin light chain [C 99.8 6.3E-16 1.4E-20 158.8 30.3 248 410-677 194-478 (508)
76 KOG0550 Molecular chaperone (D 99.8 2.3E-17 5.1E-22 157.2 17.9 272 371-681 50-353 (486)
77 KOG1156 N-terminal acetyltrans 99.8 2.8E-14 6E-19 144.0 39.8 427 143-678 9-511 (700)
78 PLN02789 farnesyltranstransfer 99.7 1E-15 2.2E-20 151.1 27.6 230 398-655 54-313 (320)
79 KOG1840 Kinesin light chain [C 99.7 6.6E-15 1.4E-19 151.4 32.4 314 293-644 130-479 (508)
80 cd05804 StaR_like StaR_like; a 99.7 2.1E-14 4.5E-19 148.5 32.8 313 321-679 2-337 (355)
81 KOG2376 Signal recognition par 99.7 2.8E-13 6.1E-18 135.4 38.0 436 42-603 19-515 (652)
82 KOG1915 Cell cycle control pro 99.7 1.5E-13 3.4E-18 133.3 33.7 370 282-678 64-500 (677)
83 KOG3785 Uncharacterized conser 99.7 2.3E-14 5E-19 134.0 26.9 365 262-673 32-452 (557)
84 KOG3785 Uncharacterized conser 99.7 2.7E-13 5.8E-18 127.0 32.3 336 295-682 155-494 (557)
85 KOG2376 Signal recognition par 99.7 9E-13 1.9E-17 131.9 35.6 385 261-683 21-492 (652)
86 PF12569 NARP1: NMDA receptor- 99.7 1.7E-12 3.7E-17 135.6 38.1 45 631-675 473-517 (517)
87 cd05804 StaR_like StaR_like; a 99.6 3.5E-13 7.6E-18 139.3 32.6 315 287-645 2-337 (355)
88 TIGR03302 OM_YfiO outer membra 99.6 3.9E-14 8.5E-19 136.8 20.4 189 451-680 34-234 (235)
89 PRK15359 type III secretion sy 99.6 5.6E-14 1.2E-18 122.8 15.3 113 548-662 27-139 (144)
90 KOG3060 Uncharacterized conser 99.6 3.7E-12 8.1E-17 114.5 26.9 189 410-626 47-238 (289)
91 COG3071 HemY Uncharacterized e 99.6 3.6E-11 7.9E-16 115.5 34.5 305 328-684 87-398 (400)
92 TIGR03302 OM_YfiO outer membra 99.6 3E-13 6.5E-18 130.6 21.0 186 369-610 32-234 (235)
93 PRK15359 type III secretion sy 99.6 3.2E-14 7E-19 124.3 12.6 116 565-685 13-128 (144)
94 PRK04841 transcriptional regul 99.6 3.5E-11 7.5E-16 140.5 40.3 352 293-683 376-765 (903)
95 PRK10370 formate-dependent nit 99.5 1.3E-13 2.7E-18 127.3 15.6 126 558-683 52-178 (198)
96 PF12569 NARP1: NMDA receptor- 99.5 1.4E-11 3E-16 128.8 31.0 319 324-681 3-337 (517)
97 KOG1128 Uncharacterized conser 99.5 7.6E-13 1.7E-17 135.7 20.3 225 412-681 395-619 (777)
98 KOG4340 Uncharacterized conser 99.5 2.9E-11 6.4E-16 110.9 28.3 362 265-683 23-448 (459)
99 KOG2047 mRNA splicing factor [ 99.5 3.9E-09 8.4E-14 107.1 44.9 278 398-680 364-689 (835)
100 KOG1130 Predicted G-alpha GTPa 99.5 2.7E-13 5.9E-18 129.3 14.7 271 375-678 22-344 (639)
101 KOG3060 Uncharacterized conser 99.5 1.2E-11 2.6E-16 111.2 22.8 181 451-658 53-234 (289)
102 PRK15179 Vi polysaccharide bio 99.5 2.2E-12 4.7E-17 139.9 21.7 139 541-681 82-220 (694)
103 KOG1130 Predicted G-alpha GTPa 99.5 1.1E-12 2.4E-17 125.2 16.3 300 296-630 22-372 (639)
104 PRK14720 transcript cleavage f 99.5 6.3E-12 1.4E-16 136.9 23.0 231 409-684 25-312 (906)
105 PRK04841 transcriptional regul 99.5 4.6E-10 9.9E-15 131.2 40.3 321 289-648 407-764 (903)
106 PRK14720 transcript cleavage f 99.5 1E-11 2.3E-16 135.3 24.4 291 280-648 20-310 (906)
107 COG3071 HemY Uncharacterized e 99.5 8.9E-10 1.9E-14 106.1 34.3 297 294-644 87-390 (400)
108 KOG4340 Uncharacterized conser 99.5 2.8E-11 6.1E-16 111.1 22.6 178 283-475 134-335 (459)
109 COG5010 TadD Flp pilus assembl 99.5 7.2E-12 1.6E-16 114.1 18.6 178 431-639 49-226 (257)
110 PRK10370 formate-dependent nit 99.5 6E-12 1.3E-16 116.2 18.6 124 499-649 52-178 (198)
111 KOG1128 Uncharacterized conser 99.4 1.7E-11 3.8E-16 125.9 22.8 295 322-683 395-706 (777)
112 COG5010 TadD Flp pilus assembl 99.4 1E-11 2.2E-16 113.2 18.2 180 396-604 48-227 (257)
113 TIGR02552 LcrH_SycD type III s 99.4 2E-12 4.3E-17 112.9 13.2 116 567-684 5-120 (135)
114 KOG2047 mRNA splicing factor [ 99.4 7.5E-08 1.6E-12 98.0 46.6 424 195-670 249-715 (835)
115 PRK15179 Vi polysaccharide bio 99.4 3.8E-11 8.2E-16 130.4 23.2 141 484-651 84-224 (694)
116 KOG0553 TPR repeat-containing 99.4 9.2E-12 2E-16 115.5 14.8 120 545-666 81-200 (304)
117 PF04733 Coatomer_E: Coatomer 99.4 2E-11 4.3E-16 119.3 15.7 259 299-649 9-270 (290)
118 PF04733 Coatomer_E: Coatomer 99.3 5.8E-12 1.3E-16 123.0 11.0 250 398-684 18-271 (290)
119 TIGR02552 LcrH_SycD type III s 99.3 2.1E-11 4.6E-16 106.4 13.3 113 538-652 10-122 (135)
120 KOG0553 TPR repeat-containing 99.3 1.4E-11 3.1E-16 114.3 11.1 102 581-684 83-184 (304)
121 PRK15363 pathogenicity island 99.3 3E-11 6.5E-16 102.9 12.2 106 538-645 27-133 (157)
122 PRK15363 pathogenicity island 99.3 1.2E-10 2.6E-15 99.3 13.9 113 569-683 24-137 (157)
123 COG4783 Putative Zn-dependent 99.2 3.4E-09 7.5E-14 105.0 22.7 153 446-645 303-455 (484)
124 COG4783 Putative Zn-dependent 99.2 2E-09 4.3E-14 106.6 20.7 152 484-679 304-455 (484)
125 PLN03088 SGT1, suppressor of 99.1 7.6E-10 1.7E-14 112.5 14.9 113 548-662 5-117 (356)
126 COG4235 Cytochrome c biogenesi 99.1 3E-09 6.4E-14 100.0 16.0 122 561-682 138-260 (287)
127 KOG1941 Acetylcholine receptor 99.1 1.1E-07 2.5E-12 90.1 25.2 312 294-643 9-359 (518)
128 PF13525 YfiO: Outer membrane 99.1 1.3E-08 2.8E-13 94.9 19.1 178 451-669 6-198 (203)
129 TIGR02795 tol_pal_ybgF tol-pal 99.1 1.9E-09 4.1E-14 91.6 12.0 103 546-650 3-111 (119)
130 PLN03088 SGT1, suppressor of 99.1 2.6E-09 5.5E-14 108.7 14.7 113 489-626 5-117 (356)
131 PRK02603 photosystem I assembl 99.1 7E-09 1.5E-13 94.3 16.0 121 484-648 33-153 (172)
132 PF13525 YfiO: Outer membrane 99.1 1.6E-08 3.4E-13 94.3 18.6 186 414-630 4-195 (203)
133 KOG3617 WD40 and TPR repeat-co 99.0 4.4E-06 9.6E-11 87.6 37.2 194 289-517 910-1176(1416)
134 KOG1070 rRNA processing protei 99.0 5.4E-08 1.2E-12 107.1 23.2 249 398-676 1441-1698(1710)
135 TIGR02795 tol_pal_ybgF tol-pal 99.0 7.7E-09 1.7E-13 87.9 13.3 105 579-685 2-112 (119)
136 PRK10866 outer membrane biogen 99.0 7.4E-08 1.6E-12 92.0 21.2 180 451-674 33-237 (243)
137 PRK02603 photosystem I assembl 99.0 6.2E-09 1.3E-13 94.6 13.3 120 541-682 31-153 (172)
138 PRK10866 outer membrane biogen 99.0 1.1E-07 2.4E-12 90.8 22.3 198 289-512 30-238 (243)
139 cd00189 TPR Tetratricopeptide 99.0 4.8E-09 1E-13 84.9 11.4 99 581-681 2-100 (100)
140 KOG1941 Acetylcholine receptor 99.0 3.7E-07 8.1E-12 86.7 24.5 318 326-678 7-360 (518)
141 CHL00033 ycf3 photosystem I as 99.0 1.5E-08 3.3E-13 91.8 14.5 103 466-590 15-117 (168)
142 PF13414 TPR_11: TPR repeat; P 99.0 1.5E-09 3.3E-14 81.8 6.6 67 612-680 2-69 (69)
143 KOG1070 rRNA processing protei 99.0 2.6E-07 5.6E-12 102.0 25.6 224 308-575 1441-1664(1710)
144 PF14938 SNAP: Soluble NSF att 99.0 4.2E-08 9.1E-13 96.8 18.3 215 398-646 32-268 (282)
145 CHL00033 ycf3 photosystem I as 98.9 1.1E-08 2.4E-13 92.6 12.7 120 561-682 15-153 (168)
146 PRK10153 DNA-binding transcrip 98.9 2.5E-08 5.4E-13 105.5 17.1 136 546-684 340-488 (517)
147 PF13414 TPR_11: TPR repeat; P 98.9 2.9E-09 6.2E-14 80.2 7.2 67 544-610 2-69 (69)
148 KOG3081 Vesicle coat complex C 98.9 4.5E-07 9.8E-12 82.9 22.0 71 560-630 188-258 (299)
149 PF09976 TPR_21: Tetratricopep 98.9 4.3E-08 9.4E-13 86.2 15.3 117 557-676 23-145 (145)
150 cd00189 TPR Tetratricopeptide 98.9 1.3E-08 2.7E-13 82.4 10.9 99 547-647 2-100 (100)
151 KOG3617 WD40 and TPR repeat-co 98.9 6.1E-07 1.3E-11 93.7 25.0 172 260-477 736-939 (1416)
152 KOG3081 Vesicle coat complex C 98.9 2.2E-06 4.8E-11 78.5 25.7 255 299-614 16-277 (299)
153 KOG2053 Mitochondrial inherita 98.9 1.1E-05 2.4E-10 86.0 33.9 225 264-517 21-257 (932)
154 COG0457 NrfG FOG: TPR repeat [ 98.9 2.5E-06 5.3E-11 82.5 28.3 225 396-647 38-268 (291)
155 PF09976 TPR_21: Tetratricopep 98.9 7.2E-08 1.6E-12 84.8 15.5 120 463-605 24-144 (145)
156 PF13432 TPR_16: Tetratricopep 98.9 2.3E-09 5E-14 79.6 5.1 64 618-683 2-65 (65)
157 COG0457 NrfG FOG: TPR repeat [ 98.9 2.6E-06 5.6E-11 82.3 28.1 224 428-681 36-268 (291)
158 KOG0543 FKBP-type peptidyl-pro 98.9 3.1E-08 6.6E-13 96.5 13.0 135 545-681 208-358 (397)
159 PF13432 TPR_16: Tetratricopep 98.8 1.2E-08 2.6E-13 75.7 7.3 64 550-613 2-65 (65)
160 COG4785 NlpI Lipoprotein NlpI, 98.8 7.3E-07 1.6E-11 78.8 19.0 199 366-609 61-267 (297)
161 PRK11906 transcriptional regul 98.8 3.7E-07 8.1E-12 91.4 19.6 171 329-512 259-433 (458)
162 PRK11906 transcriptional regul 98.8 7.7E-08 1.7E-12 96.3 14.5 119 561-681 274-404 (458)
163 KOG0543 FKBP-type peptidyl-pro 98.8 1.3E-07 2.8E-12 92.3 15.6 101 545-646 257-357 (397)
164 COG4235 Cytochrome c biogenesi 98.8 7.2E-08 1.6E-12 90.8 13.4 107 541-649 152-261 (287)
165 PF12895 Apc3: Anaphase-promot 98.8 7E-09 1.5E-13 81.5 5.6 81 592-675 2-84 (84)
166 PF12895 Apc3: Anaphase-promot 98.8 1.8E-08 3.9E-13 79.2 7.6 83 499-605 2-84 (84)
167 KOG2053 Mitochondrial inherita 98.8 0.00018 3.9E-09 77.1 38.9 199 261-481 52-257 (932)
168 KOG1914 mRNA cleavage and poly 98.8 0.00029 6.2E-09 71.3 38.4 369 281-680 10-503 (656)
169 PF14938 SNAP: Soluble NSF att 98.8 2.4E-07 5.1E-12 91.5 17.0 98 582-681 117-228 (282)
170 PRK15331 chaperone protein Sic 98.8 8.4E-08 1.8E-12 82.4 11.8 109 539-650 31-139 (165)
171 PRK15331 chaperone protein Sic 98.8 3.5E-08 7.5E-13 84.7 9.3 110 570-682 28-137 (165)
172 COG3898 Uncharacterized membra 98.8 4.2E-05 9E-10 74.0 30.4 296 331-683 90-396 (531)
173 KOG4648 Uncharacterized conser 98.8 1.1E-08 2.4E-13 96.1 6.3 223 418-683 100-335 (536)
174 PRK10803 tol-pal system protei 98.8 1.1E-07 2.4E-12 91.3 13.1 104 545-650 142-252 (263)
175 PRK10153 DNA-binding transcrip 98.7 3.2E-07 7E-12 97.2 16.6 85 563-650 402-488 (517)
176 KOG2471 TPR repeat-containing 98.7 1.7E-05 3.7E-10 78.7 26.6 361 295-676 210-682 (696)
177 PRK10803 tol-pal system protei 98.7 3.9E-07 8.4E-12 87.6 15.2 108 451-580 143-252 (263)
178 KOG3616 Selective LIM binding 98.7 0.0004 8.8E-09 72.4 36.8 34 648-681 994-1027(1636)
179 COG4785 NlpI Lipoprotein NlpI, 98.7 1.9E-06 4.2E-11 76.2 16.7 204 325-577 65-269 (297)
180 COG3898 Uncharacterized membra 98.7 0.00014 3.1E-09 70.4 30.2 289 297-644 90-392 (531)
181 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 7.1E-07 1.5E-11 90.2 15.6 124 548-676 172-295 (395)
182 PF12688 TPR_5: Tetratrico pep 98.6 6.1E-07 1.3E-11 74.4 12.2 96 546-643 2-103 (120)
183 COG4105 ComL DNA uptake lipopr 98.6 8.6E-06 1.9E-10 75.3 20.3 175 485-683 33-238 (254)
184 COG4700 Uncharacterized protei 98.6 9E-06 1.9E-10 70.3 18.8 129 545-676 89-220 (251)
185 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 7.7E-07 1.7E-11 89.9 14.2 124 488-641 171-294 (395)
186 PF12688 TPR_5: Tetratrico pep 98.6 1.1E-06 2.4E-11 72.9 12.5 97 579-677 1-103 (120)
187 KOG2300 Uncharacterized conser 98.6 0.0012 2.6E-08 66.1 34.0 370 293-684 9-520 (629)
188 PF14559 TPR_19: Tetratricopep 98.5 2.4E-07 5.2E-12 69.4 6.7 65 556-620 2-66 (68)
189 COG4700 Uncharacterized protei 98.5 1.7E-05 3.8E-10 68.5 18.5 148 465-642 71-220 (251)
190 PF13371 TPR_9: Tetratricopept 98.5 4.3E-07 9.4E-12 69.1 8.2 69 552-620 2-70 (73)
191 COG4105 ComL DNA uptake lipopr 98.5 2.4E-05 5.1E-10 72.4 20.4 85 562-649 133-238 (254)
192 KOG4648 Uncharacterized conser 98.5 3.4E-08 7.4E-13 92.9 1.9 235 374-651 101-337 (536)
193 KOG4234 TPR repeat-containing 98.5 1.6E-06 3.4E-11 75.7 11.2 114 545-660 95-213 (271)
194 PF14559 TPR_19: Tetratricopep 98.5 2.9E-07 6.2E-12 69.0 5.7 67 590-658 2-68 (68)
195 PF13512 TPR_18: Tetratricopep 98.5 3.5E-06 7.5E-11 70.9 11.9 120 545-685 10-135 (142)
196 COG1729 Uncharacterized protei 98.4 3.7E-06 8.1E-11 78.4 13.2 108 489-618 144-254 (262)
197 KOG2300 Uncharacterized conser 98.4 0.0026 5.7E-08 63.7 41.6 421 193-673 6-551 (629)
198 PF13512 TPR_18: Tetratricopep 98.4 4.1E-06 8.9E-11 70.5 12.0 89 484-594 8-99 (142)
199 COG1729 Uncharacterized protei 98.4 3.4E-06 7.4E-11 78.7 12.7 104 548-653 144-253 (262)
200 PF06552 TOM20_plant: Plant sp 98.4 1.1E-06 2.3E-11 76.3 8.3 88 596-683 8-114 (186)
201 PF13371 TPR_9: Tetratricopept 98.4 1.2E-06 2.5E-11 66.7 7.6 68 586-655 2-69 (73)
202 KOG2796 Uncharacterized conser 98.4 0.0002 4.3E-09 65.7 22.6 220 414-659 68-333 (366)
203 KOG3616 Selective LIM binding 98.4 0.006 1.3E-07 64.1 37.6 60 611-673 993-1058(1636)
204 KOG2796 Uncharacterized conser 98.4 0.00033 7.1E-09 64.3 22.8 184 420-623 127-333 (366)
205 KOG4234 TPR repeat-containing 98.3 1E-05 2.3E-10 70.7 12.2 113 328-458 98-210 (271)
206 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 2.1E-06 4.5E-11 86.1 8.8 70 574-645 70-142 (453)
207 PF13424 TPR_12: Tetratricopep 98.2 2.2E-06 4.8E-11 66.1 5.7 66 543-608 3-75 (78)
208 PF06552 TOM20_plant: Plant sp 98.2 1.1E-05 2.3E-10 70.1 10.1 98 561-658 7-123 (186)
209 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 5.4E-06 1.2E-10 83.2 9.3 71 538-608 68-141 (453)
210 PF13424 TPR_12: Tetratricopep 98.2 3.1E-06 6.7E-11 65.3 6.0 72 140-223 4-75 (78)
211 KOG4555 TPR repeat-containing 98.2 2.5E-05 5.5E-10 63.2 11.1 103 545-649 43-149 (175)
212 KOG4555 TPR repeat-containing 98.2 5.5E-05 1.2E-09 61.3 12.4 97 582-680 46-146 (175)
213 PF07079 DUF1347: Protein of u 98.1 0.012 2.6E-07 58.7 33.6 100 421-521 304-415 (549)
214 COG5107 RNA14 Pre-mRNA 3'-end 98.1 0.015 3.2E-07 58.0 33.5 391 281-681 32-534 (660)
215 KOG4507 Uncharacterized conser 98.1 0.00012 2.6E-09 74.4 15.6 97 587-685 615-712 (886)
216 KOG1586 Protein required for f 98.0 0.0029 6.3E-08 57.3 21.7 184 398-615 31-231 (288)
217 KOG1586 Protein required for f 98.0 0.00049 1.1E-08 62.1 16.7 137 545-684 74-230 (288)
218 KOG4642 Chaperone-dependent E3 98.0 1.4E-05 3E-10 72.1 7.0 127 545-673 10-141 (284)
219 KOG2471 TPR repeat-containing 98.0 0.00013 2.8E-09 72.6 14.3 166 417-591 208-381 (696)
220 KOG4642 Chaperone-dependent E3 98.0 6E-05 1.3E-09 68.1 10.7 96 585-682 16-111 (284)
221 KOG0985 Vesicle coat protein c 98.0 0.012 2.7E-07 64.2 29.4 274 331-669 1054-1374(1666)
222 PF13281 DUF4071: Domain of un 98.0 0.0047 1E-07 61.8 24.7 186 365-578 136-338 (374)
223 PF13428 TPR_14: Tetratricopep 97.9 1.8E-05 3.8E-10 52.9 4.7 40 547-586 3-42 (44)
224 PF05843 Suf: Suppressor of fo 97.9 0.00012 2.7E-09 71.9 12.7 135 547-683 3-141 (280)
225 KOG2610 Uncharacterized conser 97.9 0.00097 2.1E-08 63.5 17.6 164 454-642 107-274 (491)
226 PF13431 TPR_17: Tetratricopep 97.9 1.2E-05 2.6E-10 49.9 3.3 32 638-669 2-33 (34)
227 PF02259 FAT: FAT domain; Int 97.9 0.014 3.1E-07 60.1 28.3 140 451-590 147-303 (352)
228 KOG1914 mRNA cleavage and poly 97.9 0.039 8.4E-07 56.5 33.5 116 561-678 347-464 (656)
229 KOG1258 mRNA processing protei 97.9 0.044 9.6E-07 57.1 33.3 339 279-670 67-421 (577)
230 PF13428 TPR_14: Tetratricopep 97.9 2.9E-05 6.3E-10 51.8 5.2 42 580-621 2-43 (44)
231 KOG2610 Uncharacterized conser 97.9 0.0015 3.3E-08 62.2 18.2 152 398-572 120-274 (491)
232 PF10345 Cohesin_load: Cohesin 97.9 0.072 1.6E-06 59.0 34.8 340 308-667 38-467 (608)
233 KOG1585 Protein required for f 97.9 0.0025 5.5E-08 58.1 18.5 199 417-637 33-249 (308)
234 PF10300 DUF3808: Protein of u 97.8 0.027 5.8E-07 59.8 29.2 159 427-608 200-376 (468)
235 PF05843 Suf: Suppressor of fo 97.8 0.00055 1.2E-08 67.3 15.0 136 372-519 3-140 (280)
236 KOG0545 Aryl-hydrocarbon recep 97.8 0.00012 2.5E-09 66.4 9.0 106 544-651 177-300 (329)
237 PF04184 ST7: ST7 protein; In 97.8 0.0019 4.1E-08 65.4 18.4 187 425-650 178-381 (539)
238 PF00515 TPR_1: Tetratricopept 97.8 3E-05 6.6E-10 48.4 3.9 34 649-682 1-34 (34)
239 KOG0985 Vesicle coat protein c 97.8 0.017 3.8E-07 63.1 26.2 145 289-476 1102-1246(1666)
240 PF08631 SPO22: Meiosis protei 97.8 0.03 6.4E-07 55.2 26.8 100 77-213 3-103 (278)
241 PF07079 DUF1347: Protein of u 97.8 0.052 1.1E-06 54.5 33.5 49 623-674 472-520 (549)
242 KOG4507 Uncharacterized conser 97.8 0.00059 1.3E-08 69.6 14.5 100 422-523 614-713 (886)
243 PF07719 TPR_2: Tetratricopept 97.8 4.9E-05 1.1E-09 47.5 4.6 34 649-682 1-34 (34)
244 KOG1585 Protein required for f 97.8 0.007 1.5E-07 55.3 19.6 201 371-603 32-251 (308)
245 PF02259 FAT: FAT domain; Int 97.8 0.018 4E-07 59.2 26.2 138 542-681 143-341 (352)
246 COG3118 Thioredoxin domain-con 97.7 0.0051 1.1E-07 58.3 18.6 133 288-445 131-266 (304)
247 PF13431 TPR_17: Tetratricopep 97.7 3.1E-05 6.8E-10 48.0 2.9 32 568-599 2-33 (34)
248 COG2909 MalT ATP-dependent tra 97.7 0.12 2.7E-06 56.4 31.6 302 325-674 347-684 (894)
249 PF04184 ST7: ST7 protein; In 97.7 0.0041 8.9E-08 63.1 18.7 183 459-683 177-380 (539)
250 PF13281 DUF4071: Domain of un 97.6 0.011 2.4E-07 59.2 19.8 178 290-481 140-336 (374)
251 KOG0545 Aryl-hydrocarbon recep 97.5 0.00067 1.4E-08 61.7 9.7 99 582-682 181-297 (329)
252 KOG1550 Extracellular protein 97.5 0.08 1.7E-06 57.6 27.7 283 341-682 228-542 (552)
253 KOG0530 Protein farnesyltransf 97.5 0.024 5.3E-07 52.5 19.4 217 398-659 43-269 (318)
254 KOG0376 Serine-threonine phosp 97.5 0.00021 4.7E-09 71.7 7.0 112 547-660 6-117 (476)
255 PF08631 SPO22: Meiosis protei 97.5 0.098 2.1E-06 51.5 25.8 137 302-446 4-152 (278)
256 COG3118 Thioredoxin domain-con 97.5 0.02 4.3E-07 54.4 18.8 63 414-477 133-195 (304)
257 KOG0376 Serine-threonine phosp 97.5 9E-05 2E-09 74.3 3.6 100 584-685 9-108 (476)
258 KOG1550 Extracellular protein 97.5 0.068 1.5E-06 58.2 26.0 289 307-647 228-541 (552)
259 PF00515 TPR_1: Tetratricopept 97.4 0.00029 6.3E-09 43.9 4.0 31 547-577 3-33 (34)
260 KOG0890 Protein kinase of the 97.4 0.24 5.3E-06 59.9 30.2 134 542-677 1667-1832(2382)
261 PF07719 TPR_2: Tetratricopept 97.3 0.00046 1E-08 43.0 4.7 31 547-577 3-33 (34)
262 PF10300 DUF3808: Protein of u 97.3 0.016 3.5E-07 61.4 18.5 121 396-517 248-378 (468)
263 PF13181 TPR_8: Tetratricopept 97.3 0.0005 1.1E-08 42.8 4.3 33 650-682 2-34 (34)
264 COG2909 MalT ATP-dependent tra 97.3 0.46 1E-05 52.2 34.7 246 289-572 413-686 (894)
265 PF10345 Cohesin_load: Cohesin 97.3 0.49 1.1E-05 52.5 44.3 355 293-682 102-567 (608)
266 KOG0890 Protein kinase of the 97.2 0.66 1.4E-05 56.5 30.8 346 296-687 1388-1793(2382)
267 KOG0530 Protein farnesyltransf 97.1 0.027 5.9E-07 52.2 15.4 190 429-663 40-236 (318)
268 COG2976 Uncharacterized protei 97.1 0.061 1.3E-06 47.8 16.6 96 454-575 93-189 (207)
269 PF08424 NRDE-2: NRDE-2, neces 97.0 0.085 1.8E-06 53.0 19.7 165 402-576 6-185 (321)
270 KOG1308 Hsp70-interacting prot 97.0 0.00031 6.8E-09 67.2 2.1 122 552-676 121-242 (377)
271 PF03704 BTAD: Bacterial trans 97.0 0.03 6.4E-07 49.1 14.5 66 451-518 63-128 (146)
272 PF03704 BTAD: Bacterial trans 97.0 0.019 4.1E-07 50.4 13.2 112 491-606 11-123 (146)
273 PF04781 DUF627: Protein of un 96.9 0.018 3.9E-07 46.1 10.8 106 331-444 2-107 (111)
274 KOG0551 Hsp90 co-chaperone CNS 96.9 0.0057 1.2E-07 58.5 9.2 101 544-646 80-184 (390)
275 PF13176 TPR_7: Tetratricopept 96.8 0.0011 2.4E-08 41.8 2.7 30 651-680 1-30 (36)
276 COG2976 Uncharacterized protei 96.8 0.11 2.3E-06 46.4 15.6 101 327-447 91-191 (207)
277 KOG0551 Hsp90 co-chaperone CNS 96.8 0.016 3.4E-07 55.6 11.3 101 369-481 80-184 (390)
278 KOG1464 COP9 signalosome, subu 96.8 0.22 4.8E-06 46.5 18.3 198 304-516 40-261 (440)
279 PF04910 Tcf25: Transcriptiona 96.8 0.31 6.8E-06 49.6 21.5 166 477-646 33-224 (360)
280 PF04910 Tcf25: Transcriptiona 96.7 0.046 1E-06 55.6 15.1 171 319-518 34-225 (360)
281 KOG1464 COP9 signalosome, subu 96.7 0.2 4.4E-06 46.7 17.5 220 397-629 43-288 (440)
282 KOG1308 Hsp70-interacting prot 96.7 0.0014 3.1E-08 62.9 3.8 86 591-678 126-211 (377)
283 KOG2396 HAT (Half-A-TPR) repea 96.7 0.89 1.9E-05 46.7 36.2 107 576-682 457-564 (568)
284 PF13174 TPR_6: Tetratricopept 96.7 0.0026 5.7E-08 39.1 3.7 33 650-682 1-33 (33)
285 PF13181 TPR_8: Tetratricopept 96.7 0.0029 6.3E-08 39.3 3.8 30 547-576 3-32 (34)
286 KOG2041 WD40 repeat protein [G 96.6 1.2 2.7E-05 47.4 24.7 80 415-509 796-875 (1189)
287 PF08424 NRDE-2: NRDE-2, neces 96.5 0.095 2.1E-06 52.7 15.7 146 538-683 12-188 (321)
288 KOG2041 WD40 repeat protein [G 96.5 0.58 1.3E-05 49.7 20.6 184 359-604 684-877 (1189)
289 COG0790 FOG: TPR repeat, SEL1 96.4 0.33 7.2E-06 48.3 19.0 83 426-515 52-142 (292)
290 PF14561 TPR_20: Tetratricopep 96.2 0.062 1.3E-06 42.2 9.7 46 401-446 8-53 (90)
291 COG0790 FOG: TPR repeat, SEL1 96.2 1.6 3.4E-05 43.5 24.4 159 398-593 58-236 (292)
292 PF09613 HrpB1_HrpK: Bacterial 96.2 0.5 1.1E-05 41.1 15.6 120 545-669 10-129 (160)
293 PF13174 TPR_6: Tetratricopept 96.1 0.011 2.3E-07 36.3 4.1 31 417-447 2-32 (33)
294 KOG3824 Huntingtin interacting 96.0 0.026 5.7E-07 53.4 7.8 78 545-622 116-193 (472)
295 PF13374 TPR_10: Tetratricopep 96.0 0.013 2.8E-07 38.3 4.4 41 141-181 2-42 (42)
296 smart00028 TPR Tetratricopepti 95.9 0.013 2.7E-07 35.4 3.7 33 650-682 2-34 (34)
297 KOG3783 Uncharacterized conser 95.9 1.3 2.8E-05 46.1 19.6 229 308-576 250-522 (546)
298 PF04781 DUF627: Protein of un 95.9 0.089 1.9E-06 42.3 9.0 46 633-678 62-107 (111)
299 COG4649 Uncharacterized protei 95.8 0.98 2.1E-05 39.5 15.5 138 464-623 72-210 (221)
300 COG4649 Uncharacterized protei 95.8 0.97 2.1E-05 39.5 15.4 129 297-443 64-195 (221)
301 PF13176 TPR_7: Tetratricopept 95.7 0.029 6.3E-07 35.2 4.8 31 488-518 1-31 (36)
302 KOG2396 HAT (Half-A-TPR) repea 95.7 0.13 2.7E-06 52.5 11.4 88 565-654 91-179 (568)
303 PF14561 TPR_20: Tetratricopep 95.7 0.18 4E-06 39.5 10.2 67 564-630 7-75 (90)
304 PRK10941 hypothetical protein; 95.6 0.11 2.4E-06 50.2 10.6 75 545-619 181-255 (269)
305 KOG1258 mRNA processing protei 95.6 3.6 7.9E-05 43.5 35.6 349 266-663 93-489 (577)
306 PF09986 DUF2225: Uncharacteri 95.6 0.17 3.6E-06 47.3 11.4 105 499-621 90-208 (214)
307 PRK15180 Vi polysaccharide bio 95.5 3.3 7.2E-05 42.3 21.3 125 303-449 301-425 (831)
308 PF09613 HrpB1_HrpK: Bacterial 95.5 0.27 5.9E-06 42.7 11.4 84 371-466 11-94 (160)
309 KOG3824 Huntingtin interacting 95.3 0.039 8.4E-07 52.3 6.0 73 584-658 121-193 (472)
310 PRK10941 hypothetical protein; 95.3 0.23 5E-06 48.0 11.4 82 365-458 176-257 (269)
311 PF12968 DUF3856: Domain of Un 95.3 0.65 1.4E-05 37.6 11.7 102 493-607 16-128 (144)
312 KOG1463 26S proteasome regulat 95.2 3.3 7.2E-05 40.5 21.9 280 296-611 9-319 (411)
313 PF14853 Fis1_TPR_C: Fis1 C-te 95.2 0.092 2E-06 36.2 6.1 40 416-456 2-41 (53)
314 COG4976 Predicted methyltransf 95.2 0.026 5.6E-07 51.2 4.3 50 633-682 13-62 (287)
315 COG5107 RNA14 Pre-mRNA 3'-end 95.2 4.2 9.1E-05 41.3 36.4 244 280-578 291-535 (660)
316 KOG3783 Uncharacterized conser 95.1 2.6 5.7E-05 43.9 18.7 245 398-647 250-523 (546)
317 TIGR02561 HrpB1_HrpK type III 95.1 1.2 2.6E-05 38.1 13.5 85 546-630 11-95 (153)
318 smart00028 TPR Tetratricopepti 94.9 0.05 1.1E-06 32.6 4.1 29 582-610 4-32 (34)
319 PF12968 DUF3856: Domain of Un 94.9 1.7 3.7E-05 35.3 13.3 94 423-518 17-132 (144)
320 KOG1538 Uncharacterized conser 94.9 2.1 4.6E-05 45.3 17.3 251 299-606 564-831 (1081)
321 COG3914 Spy Predicted O-linked 94.8 0.4 8.6E-06 50.1 12.0 125 558-684 44-177 (620)
322 PF14853 Fis1_TPR_C: Fis1 C-te 94.7 0.2 4.3E-06 34.6 6.6 29 585-613 7-35 (53)
323 KOG0529 Protein geranylgeranyl 94.6 5.7 0.00012 40.1 20.0 127 560-687 90-233 (421)
324 PRK11619 lytic murein transgly 94.5 9.9 0.00022 42.2 35.8 246 411-677 125-374 (644)
325 PF09986 DUF2225: Uncharacteri 94.4 1.2 2.7E-05 41.5 13.4 103 464-578 91-198 (214)
326 TIGR02561 HrpB1_HrpK type III 94.2 2.7 5.8E-05 36.0 13.7 68 398-466 27-94 (153)
327 PF10602 RPN7: 26S proteasome 93.9 0.55 1.2E-05 42.4 10.0 61 545-605 36-99 (177)
328 COG5191 Uncharacterized conser 93.9 0.095 2.1E-06 49.9 5.0 81 537-617 99-180 (435)
329 KOG3364 Membrane protein invol 93.8 0.42 9.2E-06 39.8 7.8 75 579-655 32-111 (149)
330 KOG1310 WD40 repeat protein [G 93.8 0.15 3.1E-06 52.3 6.3 103 544-648 373-478 (758)
331 COG4976 Predicted methyltransf 93.6 0.11 2.5E-06 47.2 4.8 60 554-613 4-63 (287)
332 KOG0128 RNA-binding protein SA 93.6 14 0.0003 40.9 23.9 241 394-659 92-356 (881)
333 PF04053 Coatomer_WDAD: Coatom 93.5 3 6.4E-05 43.8 15.7 157 300-512 270-428 (443)
334 PF10602 RPN7: 26S proteasome 93.5 0.95 2.1E-05 40.9 10.6 105 451-574 37-142 (177)
335 PRK15180 Vi polysaccharide bio 93.5 0.42 9E-06 48.4 8.8 125 556-682 300-424 (831)
336 PRK11619 lytic murein transgly 93.5 15 0.00033 40.8 34.1 68 281-352 86-156 (644)
337 KOG1538 Uncharacterized conser 93.4 3.6 7.9E-05 43.6 15.5 182 296-514 637-832 (1081)
338 PF13374 TPR_10: Tetratricopep 93.1 0.19 4.1E-06 32.5 4.3 30 650-679 3-32 (42)
339 KOG3364 Membrane protein invol 93.0 1.3 2.7E-05 37.1 9.3 77 370-455 32-110 (149)
340 KOG0529 Protein geranylgeranyl 92.9 6.1 0.00013 39.9 15.8 132 501-657 90-237 (421)
341 COG5159 RPN6 26S proteasome re 92.7 9.5 0.00021 36.4 22.8 203 296-516 8-236 (421)
342 KOG2422 Uncharacterized conser 92.1 13 0.00027 39.4 17.3 34 319-352 278-311 (665)
343 PF07721 TPR_4: Tetratricopept 92.1 0.17 3.8E-06 28.9 2.6 25 68-92 2-26 (26)
344 KOG1839 Uncharacterized protei 92.1 1.9 4.1E-05 49.8 12.6 171 488-678 934-1128(1236)
345 PRK13184 pknD serine/threonine 92.0 29 0.00062 40.2 26.7 99 296-417 480-588 (932)
346 PF04053 Coatomer_WDAD: Coatom 92.0 12 0.00025 39.5 17.6 27 545-571 347-373 (443)
347 COG3914 Spy Predicted O-linked 91.9 16 0.00034 38.8 17.9 79 544-622 100-185 (620)
348 KOG4814 Uncharacterized conser 91.9 1.2 2.7E-05 46.9 10.0 102 488-608 356-457 (872)
349 KOG1839 Uncharacterized protei 91.7 2.3 5E-05 49.2 12.7 174 417-608 934-1128(1236)
350 KOG1310 WD40 repeat protein [G 91.6 0.61 1.3E-05 48.0 7.4 78 533-610 396-476 (758)
351 PRK13184 pknD serine/threonine 91.3 33 0.00072 39.7 32.7 408 200-678 481-925 (932)
352 COG1747 Uncharacterized N-term 91.3 8.6 0.00019 39.9 14.9 158 289-448 97-292 (711)
353 KOG1463 26S proteasome regulat 91.3 16 0.00034 36.0 20.7 262 398-680 21-318 (411)
354 COG5191 Uncharacterized conser 91.2 0.55 1.2E-05 44.9 6.2 87 567-655 95-182 (435)
355 COG5159 RPN6 26S proteasome re 91.0 15 0.00033 35.2 20.8 215 329-608 7-235 (421)
356 PF12862 Apc5: Anaphase-promot 91.0 4.4 9.5E-05 32.1 10.5 59 461-519 9-74 (94)
357 PF07720 TPR_3: Tetratricopept 90.8 0.72 1.6E-05 28.8 4.5 33 650-682 2-36 (36)
358 PF12862 Apc5: Anaphase-promot 90.5 2.1 4.6E-05 33.9 8.3 66 495-576 7-72 (94)
359 PF10516 SHNi-TPR: SHNi-TPR; 90.4 0.68 1.5E-05 29.3 4.1 35 142-176 2-36 (38)
360 KOG2422 Uncharacterized conser 90.1 20 0.00044 37.9 16.5 160 396-577 253-451 (665)
361 KOG2581 26S proteasome regulat 89.8 24 0.00052 35.7 16.2 108 486-612 169-280 (493)
362 COG2912 Uncharacterized conser 89.6 2.2 4.8E-05 40.6 8.8 72 547-618 183-254 (269)
363 PF15015 NYD-SP12_N: Spermatog 89.6 4.5 9.8E-05 40.7 11.1 101 494-606 184-289 (569)
364 PF10255 Paf67: RNA polymerase 89.6 1.3 2.9E-05 45.2 7.9 71 73-175 128-198 (404)
365 PF11207 DUF2989: Protein of u 89.6 3.1 6.7E-05 37.8 9.3 71 398-470 123-198 (203)
366 PF04190 DUF410: Protein of un 89.4 22 0.00047 34.5 21.2 98 398-510 7-114 (260)
367 COG3629 DnrI DNA-binding trans 89.4 11 0.00023 36.6 13.3 65 544-608 152-216 (280)
368 PF11207 DUF2989: Protein of u 89.1 3.3 7.3E-05 37.6 9.1 76 467-565 123-198 (203)
369 PF07721 TPR_4: Tetratricopept 89.1 0.54 1.2E-05 26.8 2.8 24 650-673 2-25 (26)
370 KOG0128 RNA-binding protein SA 88.6 45 0.00097 37.2 30.2 253 282-552 104-388 (881)
371 KOG2581 26S proteasome regulat 88.4 31 0.00067 35.0 16.5 131 302-449 137-281 (493)
372 KOG4814 Uncharacterized conser 88.2 41 0.00089 36.2 19.0 81 397-478 370-456 (872)
373 PF04190 DUF410: Protein of un 88.1 26 0.00057 33.9 22.7 42 309-351 75-116 (260)
374 COG2912 Uncharacterized conser 88.1 3.8 8.3E-05 39.1 9.2 74 582-657 184-257 (269)
375 COG3629 DnrI DNA-binding trans 88.0 2.5 5.5E-05 40.8 8.2 64 579-644 153-216 (280)
376 PF10516 SHNi-TPR: SHNi-TPR; 87.2 0.92 2E-05 28.7 3.2 31 650-680 2-32 (38)
377 PF10373 EST1_DNA_bind: Est1 D 86.8 2.5 5.5E-05 41.6 7.9 62 564-625 1-62 (278)
378 PF12854 PPR_1: PPR repeat 86.6 1.6 3.4E-05 26.8 4.0 28 289-316 5-32 (34)
379 COG1747 Uncharacterized N-term 86.4 46 0.001 34.9 21.4 231 410-683 61-293 (711)
380 PF07720 TPR_3: Tetratricopept 86.3 2.8 6E-05 26.2 4.9 21 417-437 3-23 (36)
381 PF00244 14-3-3: 14-3-3 protei 85.5 34 0.00074 32.6 16.9 30 294-323 4-33 (236)
382 PF13041 PPR_2: PPR repeat fam 85.4 2.8 6.2E-05 28.4 5.3 37 201-237 10-46 (50)
383 TIGR03504 FimV_Cterm FimV C-te 84.8 3.3 7.2E-05 27.2 5.0 25 328-352 2-26 (44)
384 PF10579 Rapsyn_N: Rapsyn N-te 84.7 5.5 0.00012 29.9 6.6 57 421-478 12-71 (80)
385 KOG3807 Predicted membrane pro 83.9 46 0.00099 32.7 18.8 203 413-654 182-401 (556)
386 PF12854 PPR_1: PPR repeat 83.3 3.1 6.7E-05 25.5 4.2 30 322-351 4-33 (34)
387 PRK12798 chemotaxis protein; R 83.1 59 0.0013 33.4 24.7 230 297-571 86-321 (421)
388 KOG3807 Predicted membrane pro 81.7 56 0.0012 32.1 17.4 106 398-517 201-306 (556)
389 KOG2062 26S proteasome regulat 80.5 99 0.0021 34.2 20.9 303 303-659 369-689 (929)
390 PF15015 NYD-SP12_N: Spermatog 80.2 4.7 0.0001 40.6 6.3 60 371-441 229-288 (569)
391 PF10579 Rapsyn_N: Rapsyn N-te 80.1 20 0.00044 27.0 8.0 64 453-516 9-73 (80)
392 PF12739 TRAPPC-Trs85: ER-Golg 79.6 85 0.0019 32.9 16.6 108 396-517 277-401 (414)
393 PF12739 TRAPPC-Trs85: ER-Golg 79.6 86 0.0019 32.9 17.8 92 580-681 301-402 (414)
394 PF13041 PPR_2: PPR repeat fam 79.3 6.6 0.00014 26.5 5.3 45 290-334 2-47 (50)
395 COG3947 Response regulator con 78.9 28 0.00061 33.6 10.6 61 545-605 279-339 (361)
396 COG3947 Response regulator con 78.9 8.2 0.00018 37.0 7.2 60 293-352 281-340 (361)
397 KOG2063 Vacuolar assembly/sort 78.4 1.3E+02 0.0029 34.5 25.1 166 417-607 506-712 (877)
398 COG4941 Predicted RNA polymera 77.7 78 0.0017 31.4 15.5 187 264-481 208-396 (415)
399 PF10255 Paf67: RNA polymerase 76.7 20 0.00042 37.0 9.8 61 546-607 123-192 (404)
400 KOG2062 26S proteasome regulat 76.0 1.2E+02 0.0026 33.6 15.3 286 336-677 368-675 (929)
401 PF10373 EST1_DNA_bind: Est1 D 75.9 6.1 0.00013 38.8 6.1 62 598-661 1-62 (278)
402 smart00386 HAT HAT (Half-A-TPR 75.0 6.4 0.00014 23.2 3.9 27 560-586 2-28 (33)
403 PF04348 LppC: LppC putative l 74.2 1 2.2E-05 48.7 0.0 55 455-510 29-85 (536)
404 PF09670 Cas_Cas02710: CRISPR- 73.8 52 0.0011 34.0 12.2 125 547-678 133-270 (379)
405 PF08311 Mad3_BUB1_I: Mad3/BUB 73.5 54 0.0012 27.6 12.5 108 400-513 4-126 (126)
406 KOG0276 Vesicle coat complex C 73.4 60 0.0013 34.8 12.2 25 488-512 668-692 (794)
407 TIGR03504 FimV_Cterm FimV C-te 73.2 7.3 0.00016 25.6 3.8 25 549-573 3-27 (44)
408 smart00386 HAT HAT (Half-A-TPR 73.1 4.9 0.00011 23.8 3.0 30 305-334 1-30 (33)
409 COG5187 RPN7 26S proteasome re 72.1 99 0.0021 30.0 14.7 98 544-643 114-220 (412)
410 KOG2114 Vacuolar assembly/sort 71.5 1.7E+02 0.0037 33.0 15.5 54 298-352 341-395 (933)
411 smart00299 CLH Clathrin heavy 70.7 67 0.0015 27.4 14.5 35 426-461 18-52 (140)
412 KOG0546 HSP90 co-chaperone CPR 69.1 12 0.00027 37.0 6.0 79 546-624 276-354 (372)
413 PF09670 Cas_Cas02710: CRISPR- 68.6 1.5E+02 0.0033 30.7 14.9 62 419-480 135-199 (379)
414 PF08311 Mad3_BUB1_I: Mad3/BUB 68.5 71 0.0015 26.9 12.3 85 500-606 40-126 (126)
415 PF01535 PPR: PPR repeat; Int 67.6 8.3 0.00018 22.4 3.1 26 548-573 3-28 (31)
416 COG4455 ImpE Protein of avirul 67.4 1.1E+02 0.0023 28.5 12.6 61 553-613 9-69 (273)
417 KOG4014 Uncharacterized conser 66.2 1E+02 0.0022 27.7 12.0 193 289-518 32-236 (248)
418 KOG4279 Serine/threonine prote 64.8 49 0.0011 36.3 9.7 123 363-501 194-335 (1226)
419 PF01535 PPR: PPR repeat; Int 64.6 10 0.00022 22.0 3.1 26 294-319 3-28 (31)
420 KOG2063 Vacuolar assembly/sort 64.3 2.7E+02 0.006 32.1 17.4 180 371-573 505-712 (877)
421 KOG0687 26S proteasome regulat 64.2 1.6E+02 0.0034 29.3 14.0 101 414-514 103-209 (393)
422 PF11817 Foie-gras_1: Foie gra 64.0 1.4E+02 0.003 28.7 17.5 62 544-605 177-244 (247)
423 KOG0546 HSP90 co-chaperone CPR 63.9 11 0.00023 37.4 4.5 108 550-659 227-353 (372)
424 KOG0686 COP9 signalosome, subu 63.8 51 0.0011 33.5 9.1 98 487-606 151-256 (466)
425 PF11817 Foie-gras_1: Foie gra 63.8 67 0.0015 30.9 10.1 66 487-571 179-244 (247)
426 COG4455 ImpE Protein of avirul 63.2 1.3E+02 0.0028 28.0 13.6 59 422-481 8-66 (273)
427 TIGR00756 PPR pentatricopeptid 63.0 16 0.00034 21.8 3.9 23 202-224 8-30 (35)
428 COG5536 BET4 Protein prenyltra 63.0 1E+02 0.0022 29.7 10.4 134 541-674 104-256 (328)
429 cd02682 MIT_AAA_Arch MIT: doma 62.1 52 0.0011 24.7 6.8 22 584-605 11-32 (75)
430 PRK12798 chemotaxis protein; R 60.9 2.1E+02 0.0045 29.6 20.8 181 405-609 101-287 (421)
431 PF00244 14-3-3: 14-3-3 protei 60.4 1.6E+02 0.0034 28.1 16.1 62 417-478 3-65 (236)
432 PF04348 LppC: LppC putative l 60.1 2.9 6.3E-05 45.3 0.0 117 400-516 8-128 (536)
433 TIGR00756 PPR pentatricopeptid 58.3 21 0.00045 21.2 3.8 26 548-573 3-28 (35)
434 KOG1920 IkappaB kinase complex 57.4 3.9E+02 0.0085 31.7 22.7 55 261-317 762-818 (1265)
435 PF11846 DUF3366: Domain of un 57.1 38 0.00082 31.1 6.9 43 637-680 133-175 (193)
436 COG5187 RPN7 26S proteasome re 56.6 2E+02 0.0043 28.0 14.6 101 415-515 115-221 (412)
437 PF09797 NatB_MDM20: N-acetylt 56.3 84 0.0018 32.4 10.0 47 395-441 197-243 (365)
438 KOG0276 Vesicle coat complex C 54.1 65 0.0014 34.6 8.3 99 426-574 597-695 (794)
439 COG5536 BET4 Protein prenyltra 51.8 2.3E+02 0.005 27.5 10.7 125 561-685 90-229 (328)
440 PF13812 PPR_3: Pentatricopept 51.6 35 0.00075 20.2 4.0 25 453-477 4-28 (34)
441 TIGR03362 VI_chp_7 type VI sec 51.3 2.6E+02 0.0056 27.8 15.6 158 303-480 111-280 (301)
442 PF09205 DUF1955: Domain of un 51.1 1.4E+02 0.003 25.4 8.1 54 299-352 94-147 (161)
443 smart00299 CLH Clathrin heavy 50.9 1.6E+02 0.0034 25.1 14.4 37 461-499 18-54 (140)
444 cd02680 MIT_calpain7_2 MIT: do 50.6 34 0.00075 25.6 4.3 18 499-516 19-36 (75)
445 cd02682 MIT_AAA_Arch MIT: doma 50.2 65 0.0014 24.2 5.7 31 143-173 8-38 (75)
446 PHA02537 M terminase endonucle 49.9 1.4E+02 0.0029 28.3 9.1 33 652-684 172-213 (230)
447 PF14863 Alkyl_sulf_dimr: Alky 49.9 55 0.0012 28.2 6.1 50 414-464 69-118 (141)
448 PF13812 PPR_3: Pentatricopept 49.8 40 0.00087 19.9 4.0 27 547-573 3-29 (34)
449 TIGR02498 type_III_ssaH type I 49.6 1.1E+02 0.0024 23.0 7.0 61 291-351 6-66 (79)
450 PF13226 DUF4034: Domain of un 49.4 1.8E+02 0.004 28.4 10.2 112 553-664 8-148 (277)
451 PF14863 Alkyl_sulf_dimr: Alky 49.1 59 0.0013 28.0 6.2 47 582-628 73-119 (141)
452 KOG1497 COP9 signalosome, subu 47.7 2.9E+02 0.0064 27.4 12.2 103 291-409 103-212 (399)
453 PF11846 DUF3366: Domain of un 47.0 1.8E+02 0.0039 26.6 9.7 47 468-517 129-175 (193)
454 KOG4521 Nuclear pore complex, 45.7 3.5E+02 0.0075 32.0 12.6 140 294-445 986-1133(1480)
455 KOG2561 Adaptor protein NUB1, 45.1 1.3E+02 0.0029 30.9 8.6 26 652-677 270-295 (568)
456 PF14929 TAF1_subA: TAF RNA Po 45.1 4.5E+02 0.0097 28.7 14.7 140 334-501 318-470 (547)
457 PF10952 DUF2753: Protein of u 44.9 81 0.0018 26.2 5.8 59 548-606 4-77 (140)
458 cd02680 MIT_calpain7_2 MIT: do 44.1 48 0.001 24.9 4.2 18 557-574 18-35 (75)
459 cd02683 MIT_1 MIT: domain cont 43.6 86 0.0019 23.7 5.6 20 204-223 16-35 (77)
460 KOG4014 Uncharacterized conser 43.5 2.5E+02 0.0054 25.4 14.4 183 370-608 34-233 (248)
461 KOG4521 Nuclear pore complex, 42.6 6.6E+02 0.014 30.0 14.8 192 485-681 919-1135(1480)
462 COG4941 Predicted RNA polymera 41.7 3.8E+02 0.0082 26.9 18.0 190 429-656 210-406 (415)
463 smart00671 SEL1 Sel1-like repe 41.6 51 0.0011 19.8 3.6 29 650-678 2-34 (36)
464 TIGR02710 CRISPR-associated pr 41.5 4.2E+02 0.009 27.3 12.5 55 550-604 135-196 (380)
465 KOG4151 Myosin assembly protei 41.2 59 0.0013 36.1 6.0 102 550-653 58-165 (748)
466 COG3107 LppC Putative lipoprot 40.7 4.9E+02 0.011 27.9 15.2 55 457-512 70-125 (604)
467 PF08238 Sel1: Sel1 repeat; I 40.2 60 0.0013 20.0 3.9 29 650-678 2-37 (39)
468 PHA02537 M terminase endonucle 39.6 3.1E+02 0.0067 26.0 9.7 106 300-414 92-211 (230)
469 TIGR02508 type_III_yscG type I 39.0 1E+02 0.0022 24.6 5.3 54 293-351 41-94 (115)
470 PF06957 COPI_C: Coatomer (COP 38.6 1.5E+02 0.0034 30.8 8.3 24 200-223 124-147 (422)
471 KOG4151 Myosin assembly protei 38.5 82 0.0018 35.0 6.6 84 540-623 86-171 (748)
472 COG4259 Uncharacterized protei 36.3 1.2E+02 0.0027 24.0 5.4 33 650-682 73-105 (121)
473 KOG4459 Membrane-associated pr 34.5 3.1E+02 0.0068 28.6 9.5 86 582-675 136-221 (471)
474 PF04212 MIT: MIT (microtubule 34.4 84 0.0018 22.9 4.3 19 659-677 15-33 (69)
475 KOG4279 Serine/threonine prote 34.0 2.7E+02 0.0058 31.1 9.3 125 324-465 200-335 (1226)
476 cd02677 MIT_SNX15 MIT: domain 33.8 52 0.0011 24.7 3.1 19 624-644 17-35 (75)
477 cd02683 MIT_1 MIT: domain cont 33.5 73 0.0016 24.1 3.9 31 144-174 9-39 (77)
478 PF04212 MIT: MIT (microtubule 33.5 80 0.0017 23.1 4.1 29 144-172 8-36 (69)
479 PF04090 RNA_pol_I_TF: RNA pol 33.4 3.9E+02 0.0084 24.6 14.7 31 561-591 158-190 (199)
480 KOG0687 26S proteasome regulat 32.8 5.2E+02 0.011 25.9 14.4 105 484-608 102-210 (393)
481 KOG0292 Vesicle coat complex C 32.6 7.4E+02 0.016 28.5 12.4 97 375-482 996-1116(1202)
482 KOG3024 Uncharacterized conser 32.2 4.9E+02 0.011 25.4 10.7 27 413-439 125-151 (312)
483 PRK15490 Vi polysaccharide bio 32.1 2.9E+02 0.0062 30.3 9.3 87 549-639 9-98 (578)
484 TIGR03362 VI_chp_7 type VI sec 32.1 5.2E+02 0.011 25.7 16.9 45 462-509 111-155 (301)
485 PF06957 COPI_C: Coatomer (COP 31.8 1.7E+02 0.0036 30.6 7.3 24 458-481 308-331 (422)
486 smart00101 14_3_3 14-3-3 homol 31.6 4.7E+02 0.01 25.0 18.9 25 296-320 6-30 (244)
487 cd02681 MIT_calpain7_1 MIT: do 31.0 87 0.0019 23.6 3.9 31 144-174 9-39 (76)
488 KOG4563 Cell cycle-regulated h 30.9 55 0.0012 32.7 3.5 58 72-161 46-103 (400)
489 PF01239 PPTA: Protein prenylt 30.8 1.2E+02 0.0025 17.8 4.6 26 635-660 3-28 (31)
490 KOG2561 Adaptor protein NUB1, 29.8 3.3E+02 0.0071 28.3 8.6 26 582-607 270-295 (568)
491 cd02681 MIT_calpain7_1 MIT: do 29.7 1.1E+02 0.0023 23.1 4.1 23 618-642 11-33 (76)
492 KOG2066 Vacuolar assembly/sort 29.6 8.7E+02 0.019 27.5 12.8 170 460-679 366-535 (846)
493 KOG3024 Uncharacterized conser 29.6 4.8E+02 0.01 25.5 9.2 30 541-570 123-152 (312)
494 smart00745 MIT Microtubule Int 29.2 1.5E+02 0.0033 22.1 5.1 33 144-176 11-43 (77)
495 PF04097 Nic96: Nup93/Nic96; 29.0 8.5E+02 0.018 27.2 23.2 23 659-682 515-537 (613)
496 KOG0292 Vesicle coat complex C 27.8 4.3E+02 0.0094 30.2 9.7 48 44-94 652-699 (1202)
497 PF12753 Nro1: Nuclear pore co 27.6 1E+02 0.0022 31.4 4.8 43 561-605 334-388 (404)
498 PRK15490 Vi polysaccharide bio 27.0 3.6E+02 0.0078 29.5 9.0 77 395-474 22-98 (578)
499 KOG2758 Translation initiation 27.0 6.4E+02 0.014 25.1 23.9 192 400-608 114-317 (432)
500 PF02064 MAS20: MAS20 protein 26.8 1.1E+02 0.0023 25.6 4.0 29 653-681 67-95 (121)
No 1
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-62 Score=493.68 Aligned_cols=678 Identities=39% Similarity=0.559 Sum_probs=597.8
Q ss_pred CcccccCccccccccCCCCCcchhhccccccccccCCCCCCCccCCCcchhhhhhhhhhhhcccHHHHHHHhhhHhhhcC
Q 005603 2 LCACSGEQFKFEAEDAPQSPESLATRDFSASGFSSRATGDWDSKVDDIQVDEAESTLKEALSLNYEEARALLGRLEYQRG 81 (688)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~l~~~~~~a~~llg~~~~~~g 81 (688)
.|.|.+..+... .-+-.++..++|+|+++|.+... +++..+++.+++.||+.++++++++++++++.+.|+..+++|
T Consensus 40 ~~~ea~~~lakl--~~a~~~e~~ai~~~~~s~i~~~~-~~~~~~~~~~~l~Ea~~il~~glsle~ee~~~~s~~~~~qr~ 116 (799)
T KOG4162|consen 40 FVCEAMLILAKL--DYACGEERKAIRNFSASGIDNQY-SENLPLLDLRLLAEAEAILREGLSLEYEEARALSGRLEYQRG 116 (799)
T ss_pred HHHHHHHHHHHh--hhcccHHHHHHHHHHHhhccccc-ccccchhhhhhHHHHHHHHhhhcccchhhhhhhhhhHHHhhc
Confidence 444554444433 45567888999999999999999 888999999999999999999999999999999999999999
Q ss_pred CHHHHHhhhhcCCCCccccchhhhhhhhc-ccccccCCCCCCCCCCCCCCCcchhHHHHHHHHHHHhhhhHHhhCChHHH
Q 005603 82 NYDAALQVFQGIDIVSLTPRMTRAVVERT-RPLRKHRSKGEKADSVPPPGLMSLHSISLLLEAILLKAKSLEELGHCKEA 160 (688)
Q Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~g~~~~A 160 (688)
|.++|+.+|+++++..+...+...+.... .. .+.+++.. ...-|+.+|+.|...+..++.+.++..+.+.|++.+|
T Consensus 117 ~~e~al~vFe~~~i~~~~~~~e~~i~~~s~~s-~~~~s~~~--~a~~p~~~~s~~~~~Le~~l~~lk~k~L~~~~~iqea 193 (799)
T KOG4162|consen 117 NDEAALRVFEGIDILAITYLQELEIVQNSNSS-LRQRSKAS--FAIEPSTVMSAHGAILEAELIKLKAKSLKRLGRIQEA 193 (799)
T ss_pred CcHHHHHHhcccchhHHHHHHHHHHHhccCcc-ccCCCccc--cccCCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999999999998777777766665542 11 12222110 1112556788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCccccHHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHhhCCCCCCChhhHHHHHHHHH
Q 005603 161 AKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKALELLPHLWIKAGLLEEAIIAYRRALVKPWNLDPKKVASVQRDLA 240 (688)
Q Consensus 161 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~~~~~~a 240 (688)
++.|+.+|++++...+++.+++.....++++++.+++++++.+|.+.+.+.++|..|++++..+|+.++.+.+++++.++
T Consensus 194 ~e~cr~~L~~ve~~~t~~~~~~~s~~~~l~~vl~~~~~~~~~Lw~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~ 273 (799)
T KOG4162|consen 194 AEECRSVLDIVETKATQGSKDTESGALKLQEVLSRAVELLPILWKKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFA 273 (799)
T ss_pred HHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHhHHHhcCCCCchHHHHhhhHHhhcccccchhHHHHHhhccc
Confidence 99999999999999999999866656689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCccCCCCCccccCCCccCCCchHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCC
Q 005603 241 VTLLYGGVEARLPPELKVWGPIAPKDNVEEAILLLLILMEKVASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPG 320 (688)
Q Consensus 241 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~eea~~~l~~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 320 (688)
.++.+++.+.. .-...+.+.+.++++++++++.++...++.......||+.+|.++..++...|+++.+.+.|+++++.
T Consensus 274 ~f~~~~~~Ee~-~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~ 352 (799)
T KOG4162|consen 274 LFLPKSGQEEV-ILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF 352 (799)
T ss_pred ccCCCCcHHHH-HHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 88888877654 11345667899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhH-------------------------------HHHHhHhhhcccchhhH
Q 005603 321 IYNRAERWYILALCYSAAGQNEAALNLLKKDQ-------------------------------VSRGVIQSTTSQKEHFL 369 (688)
Q Consensus 321 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l-------------------------------~~~~~~~~~~~~~~~~~ 369 (688)
.....+.|+.++.++...|....|+.++++.. |+.++++......+++.
T Consensus 353 ~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~ 432 (799)
T KOG4162|consen 353 SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLK 432 (799)
T ss_pred hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhh
Confidence 99999999999999999999999999999887 88999998888888899
Q ss_pred HHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCc
Q 005603 370 AEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNS 449 (688)
Q Consensus 370 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 449 (688)
+..+..+|.+|..+......+++|.....++++.++++++.+|.|+.+.++++..|..+++.+.|.++.+++++.++.+.
T Consensus 433 ~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~ 512 (799)
T KOG4162|consen 433 PRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDS 512 (799)
T ss_pred hhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999977666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccc-
Q 005603 450 GRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFH- 528 (688)
Q Consensus 450 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~- 528 (688)
..+|..++.++...+++.+|+.+.+.+++..| ++.........+-...++.++|+..+...+..+...+..-....+
T Consensus 513 ~~~whLLALvlSa~kr~~~Al~vvd~al~E~~--~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g 590 (799)
T KOG4162|consen 513 AKAWHLLALVLSAQKRLKEALDVVDAALEEFG--DNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEG 590 (799)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh--hhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence 69999999999999999999999999999999 788888888889999999999999999999998844332211110
Q ss_pred -----------------cccc--------------------cccc--cc--cC--CcchHHHHHHHHHHHHHcCChhHHH
Q 005603 529 -----------------KTKY--------------------ITSE--AP--SV--KNLEIATWQDLATIYMKLGSLPDAE 565 (688)
Q Consensus 529 -----------------~~~~--------------------~~~~--~~--~~--~~~~~~~~~~la~~~~~~g~~~~A~ 565 (688)
++.. .+++ .. .+ .-.....|...+..+...++.++|.
T Consensus 591 ~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~ 670 (799)
T KOG4162|consen 591 KLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEAR 670 (799)
T ss_pred hhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 0000 0000 00 00 1123567889999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Q 005603 566 ICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLE 645 (688)
Q Consensus 566 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~ 645 (688)
.|+.++-.++|..+..|+..|.++...|++.+|...|..++.++|+++++...+|.++.+.|+..+.++...+..+++++
T Consensus 671 ~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 671 SCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred HHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999998555555999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccCCCCCCCCC
Q 005603 646 PTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKLSAPVQSFV 688 (688)
Q Consensus 646 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~f~ 688 (688)
|.++++|+.+|.++...|+.++|.+||+.|+++++++|+.||+
T Consensus 751 p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~pFs 793 (799)
T KOG4162|consen 751 PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVLPFS 793 (799)
T ss_pred CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCccccc
Confidence 9999999999999999999999999999999999999999996
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-46 Score=368.10 Aligned_cols=380 Identities=19% Similarity=0.158 Sum_probs=353.7
Q ss_pred HHHHHHHHhHHHHHHcCCHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHhcCccCCCCCccccCCCccCCCchHHH
Q 005603 192 MFHKALELLPHLWIKAGLLEEAIIAYRRALVKPWNLDPKKVASVQRDLAVTLLYGGVEARLPPELKVWGPIAPKDNVEEA 271 (688)
Q Consensus 192 ~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~eea 271 (688)
....++..++++|...|++++|+..|+.+++..
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~----------------------------------------------- 146 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIELK----------------------------------------------- 146 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-----------------------------------------------
Confidence 367788899999999999999999999998873
Q ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHh
Q 005603 272 ILLLLILMEKVASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKD 351 (688)
Q Consensus 272 ~~~l~~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 351 (688)
|+..++|..+|.++...|+.+.|..+|.++++++|+...+...+|..+-..|+..+|...|.++
T Consensus 147 ----------------p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 147 ----------------PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred ----------------chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 3456778889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Q 005603 352 QVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNV 431 (688)
Q Consensus 352 l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 431 (688)
+ ...|.. +.+|..||-++..+|+. ..|+..|+++++++|..++++++||.+|...+.+
T Consensus 211 i---------~~qp~f--AiawsnLg~~f~~~Gei-----------~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 211 I---------ETQPCF--AIAWSNLGCVFNAQGEI-----------WLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred H---------hhCCce--eeeehhcchHHhhcchH-----------HHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcc
Confidence 7 444544 78899999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005603 432 EAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRI 511 (688)
Q Consensus 432 ~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 511 (688)
+.|+.+|.+++.+.|.+. .++-++|.+|..+|..+-|+..|+++++..| ..++++.++|..+-..|+..+|..+|.+
T Consensus 269 d~Avs~Y~rAl~lrpn~A-~a~gNla~iYyeqG~ldlAI~~Ykral~~~P--~F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 269 DRAVSCYLRALNLRPNHA-VAHGNLACIYYEQGLLDLAIDTYKRALELQP--NFPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred hHHHHHHHHHHhcCCcch-hhccceEEEEeccccHHHHHHHHHHHHhcCC--CchHHHhHHHHHHHhccchHHHHHHHHH
Confidence 999999999999999998 9999999999999999999999999999999 8899999999999999999999999999
Q ss_pred HHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 005603 512 LLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEA 591 (688)
Q Consensus 512 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 591 (688)
++.+.|+ .+++.++||.+|..+|.+++|..+|.++++..|..+.++.+||.+|.+
T Consensus 346 aL~l~p~-------------------------hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kq 400 (966)
T KOG4626|consen 346 ALRLCPN-------------------------HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQ 400 (966)
T ss_pred HHHhCCc-------------------------cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHh
Confidence 9999776 699999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005603 592 QSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADY 671 (688)
Q Consensus 592 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 671 (688)
+|++++|+.+|+.++++.|..++++.++|.+|..+|+.+ .|+..|.+++..+|..++++.+||.+|...|+..+|+..
T Consensus 401 qgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~--~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~s 478 (966)
T KOG4626|consen 401 QGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVS--AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQS 478 (966)
T ss_pred cccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHH--HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHH
Confidence 999999999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHcccCCCCCCC
Q 005603 672 FQAAYELKLSAPVQS 686 (688)
Q Consensus 672 ~~~al~l~p~~~~~~ 686 (688)
|+.|+.++|+.|.+.
T Consensus 479 Y~~aLklkPDfpdA~ 493 (966)
T KOG4626|consen 479 YRTALKLKPDFPDAY 493 (966)
T ss_pred HHHHHccCCCCchhh
Confidence 999999999998763
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=8.5e-44 Score=350.01 Aligned_cols=454 Identities=19% Similarity=0.162 Sum_probs=383.2
Q ss_pred HHHHhhhHhhhcCCHHHHHhhhhcCCCCccccchhh----hhhhhcccccccCCCCCCCCCCCCCCCcchhHHHHHHHHH
Q 005603 69 ARALLGRLEYQRGNYDAALQVFQGIDIVSLTPRMTR----AVVERTRPLRKHRSKGEKADSVPPPGLMSLHSISLLLEAI 144 (688)
Q Consensus 69 a~~llg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 144 (688)
.+.-|+.-.|+-|+|++|.+...-+-..+-....+. ++...+..+.+.. .......+.....+|+|
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~----------a~~~~a~r~~~q~ae~y 119 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSS----------AGSLLAIRKNPQGAEAY 119 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhh----------hhhhhhhhccchHHHHH
Confidence 355667777888888888876665531111111110 2222211111110 00001122223468999
Q ss_pred HHhhhhHHhhCChHHHHHHHHHHHHHHHhcCCCCCCCCCCccccHHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHhhCCC
Q 005603 145 LLKAKSLEELGHCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKALELLPHLWIKAGLLEEAIIAYRRALVKP 224 (688)
Q Consensus 145 ~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~ 224 (688)
-..|..+...|++++|+..|+..++. .|. +..++..++.++..+|+.+.|..+|..+|+.+
T Consensus 120 sn~aN~~kerg~~~~al~~y~~aiel--------~p~-----------fida~inla~al~~~~~~~~a~~~~~~alqln 180 (966)
T KOG4626|consen 120 SNLANILKERGQLQDALALYRAAIEL--------KPK-----------FIDAYINLAAALVTQGDLELAVQCFFEALQLN 180 (966)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHhc--------Cch-----------hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC
Confidence 99999999999999999999999875 222 56688889999999999999999999999884
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCccCCCCCccccCCCccCCCchHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 005603 225 WNLDPKKVASVQRDLAVTLLYGGVEARLPPELKVWGPIAPKDNVEEAILLLLILMEKVASKEMEWDAEIMDHLTYALSVT 304 (688)
Q Consensus 225 ~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~eea~~~l~~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 304 (688)
|. ...+...+|..+...
T Consensus 181 P~---------------------------------------------------------------l~ca~s~lgnLlka~ 197 (966)
T KOG4626|consen 181 PD---------------------------------------------------------------LYCARSDLGNLLKAE 197 (966)
T ss_pred cc---------------------------------------------------------------hhhhhcchhHHHHhh
Confidence 32 223344577888888
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhh
Q 005603 305 GQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVA 384 (688)
Q Consensus 305 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~ 384 (688)
|..++|..+|.+++...|.-..+|.+||-++..+|+...|+..|++++ ..+|.. ..+|+.||.+|...+
T Consensus 198 Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAv---------kldP~f--~dAYiNLGnV~ke~~ 266 (966)
T KOG4626|consen 198 GRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV---------KLDPNF--LDAYINLGNVYKEAR 266 (966)
T ss_pred cccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhh---------cCCCcc--hHHHhhHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999997 556666 789999999999999
Q ss_pred hhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcC
Q 005603 385 RKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQ 464 (688)
Q Consensus 385 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~ 464 (688)
.+ ++|+.+|.+++.+.|++..++-++|.+|..+|..+-|++.|++++++.|..+ +++.++|..+-..|
T Consensus 267 ~~-----------d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~-~Ay~NlanALkd~G 334 (966)
T KOG4626|consen 267 IF-----------DRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFP-DAYNNLANALKDKG 334 (966)
T ss_pred cc-----------hHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCch-HHHhHHHHHHHhcc
Confidence 99 9999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcch
Q 005603 465 RLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLE 544 (688)
Q Consensus 465 ~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (688)
+..+|+.+|.+++...| ..+++++++|.++..+|.+++|...|.++++..|. .
T Consensus 335 ~V~ea~~cYnkaL~l~p--~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-------------------------~ 387 (966)
T KOG4626|consen 335 SVTEAVDCYNKALRLCP--NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-------------------------F 387 (966)
T ss_pred chHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-------------------------h
Confidence 99999999999999999 89999999999999999999999999999999777 6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005603 545 IATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILM 624 (688)
Q Consensus 545 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 624 (688)
+.++.+||.+|.++|++++|+.+|++++.+.|..++++.++|..|..+|+.+.|+++|.+++.++|..++++.++|.+|.
T Consensus 388 aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k 467 (966)
T KOG4626|consen 388 AAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYK 467 (966)
T ss_pred hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 005603 625 KLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQ 666 (688)
Q Consensus 625 ~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 666 (688)
..|+.. +|+..|+.++++.|+.++++-++..++.-..++.
T Consensus 468 DsGni~--~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~ 507 (966)
T KOG4626|consen 468 DSGNIP--EAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWT 507 (966)
T ss_pred ccCCcH--HHHHHHHHHHccCCCCchhhhHHHHHHHHHhccc
Confidence 999998 9999999999999999999999998886554433
No 4
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.1e-39 Score=381.25 Aligned_cols=579 Identities=18% Similarity=0.081 Sum_probs=369.9
Q ss_pred CCccCCCcchhhhhhhhhhhhcccHH--HHHHHhhhHhhhcCCHHHHHhhhhcCCCCccccchhhhhhhhcccc-cccCC
Q 005603 42 WDSKVDDIQVDEAESTLKEALSLNYE--EARALLGRLEYQRGNYDAALQVFQGIDIVSLTPRMTRAVVERTRPL-RKHRS 118 (688)
Q Consensus 42 ~~~~~~~g~~~~A~~~l~~~l~~~~~--~a~~llg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 118 (688)
+..++..|++++|...|+++++.+|. .+...+|.+++..|++++|+..|+++. ...|............+ +.++.
T Consensus 268 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~--~~~p~~~~~~~~la~~~~~~g~~ 345 (899)
T TIGR02917 268 ALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQIL--KYAPNSHQARRLLASIQLRLGRV 345 (899)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHHCCCH
Confidence 44677889999999999999998875 567788999999999999999999885 22222221110000000 00000
Q ss_pred C-----CCCCCCCCCCCCcchhHHHHHHHHHHHhhhhHHhhCChHHHHHHHHHHHHHHHhcCCCCCCCCCCccccHHHHH
Q 005603 119 K-----GEKADSVPPPGLMSLHSISLLLEAILLKAKSLEELGHCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEMF 193 (688)
Q Consensus 119 ~-----~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (688)
. .+.+...+|. ..++++..|.++...|++++|+..|+.++.. .|. .
T Consensus 346 ~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~-----------~ 396 (899)
T TIGR02917 346 DEAIATLSPALGLDPD----------DPAALSLLGEAYLALGDFEKAAEYLAKATEL--------DPE-----------N 396 (899)
T ss_pred HHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCC-----------C
Confidence 0 0000000010 1245666788888888888888888777653 121 1
Q ss_pred HHHHHHhHHHHHHcCCHHHHHHHHHHhhCCCCCCChhhHHHHH-------HHHHHHHHhcCccCCCCC---ccccCCCcc
Q 005603 194 HKALELLPHLWIKAGLLEEAIIAYRRALVKPWNLDPKKVASVQ-------RDLAVTLLYGGVEARLPP---ELKVWGPIA 263 (688)
Q Consensus 194 ~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~~~-------~~~a~~ll~~~~~~~~~~---~~~~~~~~~ 263 (688)
..+...++.++...|++++|+..|++++...++........+. ..-+...+.......|+. ...+...+.
T Consensus 397 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 476 (899)
T TIGR02917 397 AAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYL 476 (899)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 1234456777778888888888888888774332111110000 000000011111111111 122333455
Q ss_pred CCCchHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHH
Q 005603 264 PKDNVEEAILLLLILMEKVASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEA 343 (688)
Q Consensus 264 ~~~~~eea~~~l~~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 343 (688)
..+++++|+..+ +..+...|.++.++..++.++...|++++|...|++++...|.+..++..++.++...|++++
T Consensus 477 ~~~~~~~A~~~~-----~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 551 (899)
T TIGR02917 477 GKGDLAKAREAF-----EKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEE 551 (899)
T ss_pred hCCCHHHHHHHH-----HHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHH
Confidence 556666666554 334445566666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005603 344 ALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGL 423 (688)
Q Consensus 344 A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 423 (688)
|+..+++++ ...+.. ...+..++.++...|++ ++|+..+++++...|.++.++..+|.
T Consensus 552 A~~~~~~~~---------~~~~~~--~~~~~~l~~~~~~~~~~-----------~~A~~~~~~~~~~~~~~~~~~~~l~~ 609 (899)
T TIGR02917 552 AVAWLEKAA---------ELNPQE--IEPALALAQYYLGKGQL-----------KKALAILNEAADAAPDSPEAWLMLGR 609 (899)
T ss_pred HHHHHHHHH---------HhCccc--hhHHHHHHHHHHHCCCH-----------HHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 666666664 112222 34455566666666666 66666666666666666666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChH
Q 005603 424 EHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPK 503 (688)
Q Consensus 424 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~ 503 (688)
++...|++++|+..|+++++..|.++ ..+..+|.++...|++++|+..+++++...| ++...+..++.++...|+++
T Consensus 610 ~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~ 686 (899)
T TIGR02917 610 AQLAAGDLNKAVSSFKKLLALQPDSA-LALLLLADAYAVMKNYAKAITSLKRALELKP--DNTEAQIGLAQLLLAAKRTE 686 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHH
Confidence 66666666666666666666666666 6666666666666666666666666666666 55666666666666666666
Q ss_pred HHHHHHHHHHHHHHhhHHhhhhccc---------cccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 005603 504 QAIGTYRILLAMIQAQRELHSKNFH---------KTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSI 574 (688)
Q Consensus 504 ~A~~~~~~al~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 574 (688)
+|+..++.+....|.....+...+. .+...+.+.+...|.. ..+..++.++...|++++|+..+++++..
T Consensus 687 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 765 (899)
T TIGR02917 687 SAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKT 765 (899)
T ss_pred HHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 6666666666555544433322111 2333444444444444 66777888888888888888888888888
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHH
Q 005603 575 EFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMN 654 (688)
Q Consensus 575 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~ 654 (688)
.|+++.+++.+|.++...|++++|+..|+++++..|+++.++..++.++...|+ . +|+.++++++...|+++..+..
T Consensus 766 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~--~A~~~~~~~~~~~~~~~~~~~~ 842 (899)
T TIGR02917 766 HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-P--RALEYAEKALKLAPNIPAILDT 842 (899)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-H--HHHHHHHHHHhhCCCCcHHHHH
Confidence 888888888888888888888888888888888888888888888888888888 6 7888888888888888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcccCCCCCC
Q 005603 655 LGLISKMEGSLQQAADYFQAAYELKLSAPVQ 685 (688)
Q Consensus 655 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 685 (688)
+|.++...|++++|+.+|++++++.|+++..
T Consensus 843 ~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 873 (899)
T TIGR02917 843 LGWLLVEKGEADRALPLLRKAVNIAPEAAAI 873 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Confidence 8888888888888888888888888877654
No 5
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=7.6e-40 Score=382.58 Aligned_cols=563 Identities=18% Similarity=0.116 Sum_probs=410.5
Q ss_pred CCCccCCCcchhhhhhhhhhhhcccH--HHHHHHhhhHhhhcCCHHHHHhhhhcCCCCcccc-chhhhhhhhcccccccC
Q 005603 41 DWDSKVDDIQVDEAESTLKEALSLNY--EEARALLGRLEYQRGNYDAALQVFQGIDIVSLTP-RMTRAVVERTRPLRKHR 117 (688)
Q Consensus 41 ~~~~~~~~g~~~~A~~~l~~~l~~~~--~~a~~llg~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 117 (688)
.+..++.+|++++|+..|+++++.+| .++++.+|.++..+|+|++|+..|+++......+ .....+.. ... ..++
T Consensus 28 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~-~~~-~~g~ 105 (899)
T TIGR02917 28 AAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLAR-AYL-LQGK 105 (899)
T ss_pred HHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHH-HHH-HCCC
Confidence 34578889999999999999999887 5778899999999999999999999886211110 00000000 000 0000
Q ss_pred CCCCCCCCCCCCCCcchhHHHHHHHHHHHhhhhHHhhCChHHHHHHHHHHHHHHHhcCCCCCCCCCCccccHHHHHHHHH
Q 005603 118 SKGEKADSVPPPGLMSLHSISLLLEAILLKAKSLEELGHCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKAL 197 (688)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 197 (688)
.+++...-.. +. ........++++..|.++..+|++++|+..|+.+++. .| + ...++
T Consensus 106 --~~~a~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~-----~------~~~~~ 162 (899)
T TIGR02917 106 --FQQVLDELPG-KT-LLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAI--------DP-----R------SLYAK 162 (899)
T ss_pred --HHHHHHhhcc-cc-cCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CC-----C------ChhhH
Confidence 0000000000 00 0000012344455555555555555555555554432 11 1 12233
Q ss_pred HHhHHHHHHcCCHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHhcCccCCCCCccccCCCccCCCchHHHHHHHHH
Q 005603 198 ELLPHLWIKAGLLEEAIIAYRRALVKPWNLDPKKVASVQRDLAVTLLYGGVEARLPPELKVWGPIAPKDNVEEAILLLLI 277 (688)
Q Consensus 198 ~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~eea~~~l~~ 277 (688)
..++.++...|++++|+..+++++...|+.. .. .......+...+++++|+..+
T Consensus 163 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~---------------------~~~~~~~~~~~g~~~~A~~~~-- 216 (899)
T TIGR02917 163 LGLAQLALAENRFDEARALIDEVLTADPGNV---DA---------------------LLLKGDLLLSLGNIELALAAY-- 216 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh---HH---------------------HHHHHHHHHhcCCHHHHHHHH--
Confidence 4444555555555555555555554422100 00 001122456677777777765
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHh
Q 005603 278 LMEKVASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGV 357 (688)
Q Consensus 278 ~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 357 (688)
+.++...|.++.++..++.++...|++++|...++++++..|+++..++..|.+++..|++++|+..|++++
T Consensus 217 ---~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l----- 288 (899)
T TIGR02917 217 ---RKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDAL----- 288 (899)
T ss_pred ---HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHH-----
Confidence 445566777778888888888888888888888888877777777777777888888888888888887775
Q ss_pred HhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005603 358 IQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDY 437 (688)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 437 (688)
...+.. ..++..+|.++...|++ ++|+..|.+++...|.++.++..++.++...|++++|+..
T Consensus 289 ----~~~~~~--~~~~~~~~~~~~~~g~~-----------~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 351 (899)
T TIGR02917 289 ----KSAPEY--LPALLLAGASEYQLGNL-----------EQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIAT 351 (899)
T ss_pred ----HhCCCc--hhHHHHHHHHHHHcCCH-----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 223333 35667778888888888 8888888888888888888888888888889999999998
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 005603 438 AIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQ 517 (688)
Q Consensus 438 ~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 517 (688)
+++++...|.++ ..+..+|.++...|++++|+..|++++...| .+...+..+|.++...|++++|+..+++++...|
T Consensus 352 ~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 428 (899)
T TIGR02917 352 LSPALGLDPDDP-AALSLLGEAYLALGDFEKAAEYLAKATELDP--ENAAARTQLGISKLSQGDPSEAIADLETAAQLDP 428 (899)
T ss_pred HHHHHhcCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC
Confidence 888888888887 8888889999999999999999999888888 7788888889999999999999999998888876
Q ss_pred hhHHhhhhcc---------ccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHH
Q 005603 518 AQRELHSKNF---------HKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGML 588 (688)
Q Consensus 518 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 588 (688)
.......... ..+...+.+.....|.++.++..+|.++...|++++|+.+|+++++.+|++..++..+|.+
T Consensus 429 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 508 (899)
T TIGR02917 429 ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARI 508 (899)
T ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 5443322211 1334445556666777888999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 005603 589 FEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQA 668 (688)
Q Consensus 589 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 668 (688)
+...|++++|+..|++++...|++..++..++.++...|+++ +|+..+++++..+|.+...+..++.++...|++++|
T Consensus 509 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 586 (899)
T TIGR02917 509 DIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEE--EAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKA 586 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHH
Confidence 999999999999999999999999999999999999999988 999999999999999999999999999999999999
Q ss_pred HHHHHHHHcccCCCCC
Q 005603 669 ADYFQAAYELKLSAPV 684 (688)
Q Consensus 669 ~~~~~~al~l~p~~~~ 684 (688)
+..+++++...|+++.
T Consensus 587 ~~~~~~~~~~~~~~~~ 602 (899)
T TIGR02917 587 LAILNEAADAAPDSPE 602 (899)
T ss_pred HHHHHHHHHcCCCCHH
Confidence 9999999988887754
No 6
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.5e-36 Score=355.09 Aligned_cols=561 Identities=17% Similarity=0.033 Sum_probs=370.5
Q ss_pred ccCCCcchhhhhhhhhhhhcccH--HHHHHHhhhHhhhcCCHHHHHhhhhcCCCCccccchhhhhhhhcccccccCCCCC
Q 005603 44 SKVDDIQVDEAESTLKEALSLNY--EEARALLGRLEYQRGNYDAALQVFQGIDIVSLTPRMTRAVVERTRPLRKHRSKGE 121 (688)
Q Consensus 44 ~~~~~g~~~~A~~~l~~~l~~~~--~~a~~llg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (688)
.....++.+.|+..|++++.++| .++...++++....|++++|.+.++++. .+.|............ .
T Consensus 37 ~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~--~~~P~~~~~~~~~~~~---~----- 106 (1157)
T PRK11447 37 LGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLS--QLAPDSNAYRSSRTTM---L----- 106 (1157)
T ss_pred HHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH--hhCCCChHHHHHHHHH---H-----
Confidence 34457889999999999999887 4566677899999999999999999987 3333322110000000 0
Q ss_pred CCCCCCCCCCcchhHHHHHHHHHHHhhhhHHhhCChHHHHHHHHHHHHHHHhcCCCCCCCCCCccccHHHHHHHHHHHhH
Q 005603 122 KADSVPPPGLMSLHSISLLLEAILLKAKSLEELGHCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKALELLP 201 (688)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~ 201 (688)
... | -....+.+|.++...|++++|+..|++++.. .|+.. ..+++...
T Consensus 107 --~~~-~-----------~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~--------~p~~~----------~la~~y~~ 154 (1157)
T PRK11447 107 --LST-P-----------EGRQALQQARLLATTGRTEEALASYDKLFNG--------APPEL----------DLAVEYWR 154 (1157)
T ss_pred --hcC-C-----------chhhHHHHHHHHHhCCCHHHHHHHHHHHccC--------CCCCh----------HHHHHHHH
Confidence 000 0 0113467788999999999999999888752 23210 11222222
Q ss_pred HHHHHcCCHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHhcCccC-----------CCC-----------------
Q 005603 202 HLWIKAGLLEEAIIAYRRALVKPWNLDPKKVASVQRDLAVTLLYGGVEA-----------RLP----------------- 253 (688)
Q Consensus 202 ~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~~~~~~a~~ll~~~~~~-----------~~~----------------- 253 (688)
.+....|++++|+..|++++...|+... +...++.++...+... .++
T Consensus 155 ~~~~~~g~~~~A~~~L~~ll~~~P~~~~-----~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~ 229 (1157)
T PRK11447 155 LVAKLPAQRPEAINQLQRLNADYPGNTG-----LRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMP 229 (1157)
T ss_pred HHhhCCccHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccC
Confidence 2233446677777777777766443111 1122222222111100 000
Q ss_pred ---Cc---c-ccCCCccCCCchHHHHHHHHHHHHHHHhhhcCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCH
Q 005603 254 ---PE---L-KVWGPIAPKDNVEEAILLLLILMEKVASKEMEWDAE-IMDHLTYALSVTGQFELLAEYVEQALPGIYNRA 325 (688)
Q Consensus 254 ---~~---~-~~~~~~~~~~~~eea~~~l~~~~~~~~l~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 325 (688)
.. . .....+......++|...+. ... ..+.++. ....+|.++...|++++|+..|++++..+|+++
T Consensus 230 ~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~-----~~~-~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~ 303 (1157)
T PRK11447 230 VSDASVAALQKYLQVFSDGDSVAAARSQLA-----EQQ-KQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDS 303 (1157)
T ss_pred CChhhHHHHHHHHHHCCCchHHHHHHHHHH-----HHH-HhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 00 0 00000111111222222210 000 1112222 223568899999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhh---------HHHHHHHHHHHHHhhhhhccchHHhhHH
Q 005603 326 ERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHF---------LAEAYKFLGICYGNVARKSISDTERVFF 396 (688)
Q Consensus 326 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~---------~~~~~~~lg~~~~~~~~~~~~~~~~~~~ 396 (688)
.+++.+|.++...|++++|+..|++++ ...+..+... .......+|.++...|++
T Consensus 304 ~a~~~Lg~~~~~~g~~~eA~~~l~~Al------~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~---------- 367 (1157)
T PRK11447 304 EALGALGQAYSQQGDRARAVAQFEKAL------ALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNL---------- 367 (1157)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH------HhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCH----------
Confidence 999999999999999999999999997 3222221110 011234457788888888
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHH-------------------
Q 005603 397 QKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLA------------------- 457 (688)
Q Consensus 397 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la------------------- 457 (688)
++|+..|++++..+|.++.+++.+|.++...|++++|+..|+++++.+|.+. .++..++
T Consensus 368 -~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~-~a~~~L~~l~~~~~~~~A~~~l~~l~ 445 (1157)
T PRK11447 368 -AQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT-NAVRGLANLYRQQSPEKALAFIASLS 445 (1157)
T ss_pred -HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHhcCHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999987 6655444
Q ss_pred -----------------------HHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005603 458 -----------------------LILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLA 514 (688)
Q Consensus 458 -----------------------~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 514 (688)
.++...|++++|+..|++++..+| ++..+++.+|.++...|++++|+..+++++.
T Consensus 446 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P--~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~ 523 (1157)
T PRK11447 446 ASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP--GSVWLTYRLAQDLRQAGQRSQADALMRRLAQ 523 (1157)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344567999999999999999999 8899999999999999999999999999999
Q ss_pred HHHhhHHhhhhccc---------cccccccc----------------------------------------cccCCcchH
Q 005603 515 MIQAQRELHSKNFH---------KTKYITSE----------------------------------------APSVKNLEI 545 (688)
Q Consensus 515 ~~~~~~~~~~~~~~---------~~~~~~~~----------------------------------------~~~~~~~~~ 545 (688)
..|++......... .+...+.+ .+...|.++
T Consensus 524 ~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~ 603 (1157)
T PRK11447 524 QKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPST 603 (1157)
T ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCc
Confidence 98887664432210 11111111 112234455
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005603 546 ATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMK 625 (688)
Q Consensus 546 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 625 (688)
..+..+|.++...|++++|+.+|+++++.+|+++.++..++.++...|++++|+..++++++..|+++.++..+|.++..
T Consensus 604 ~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~ 683 (1157)
T PRK11447 604 RIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAA 683 (1157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHh
Confidence 56666666666667777777777776666666666666666666666777777766666666666666666666666666
Q ss_pred hCCCChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHccc
Q 005603 626 LGRQSMPIARSFLMNALRLEPTNH------DAWMNLGLISKMEGSLQQAADYFQAAYELK 679 (688)
Q Consensus 626 ~g~~~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 679 (688)
.|+++ +|+..|++++...|+++ .++..+|.++...|++++|+..|++|+...
T Consensus 684 ~g~~~--eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~ 741 (1157)
T PRK11447 684 LGDTA--AAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVAS 741 (1157)
T ss_pred CCCHH--HHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 66666 66666666666554332 344455666666677777777776666543
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.3e-36 Score=355.59 Aligned_cols=521 Identities=14% Similarity=0.038 Sum_probs=397.7
Q ss_pred CCccCCCcchhhhhhhhhhhhcccHHHHH------------------HHhhhHhhhcCCHHHHHhhhhcCCCCccccchh
Q 005603 42 WDSKVDDIQVDEAESTLKEALSLNYEEAR------------------ALLGRLEYQRGNYDAALQVFQGIDIVSLTPRMT 103 (688)
Q Consensus 42 ~~~~~~~g~~~~A~~~l~~~l~~~~~~a~------------------~llg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 103 (688)
+...+..|+.++|...+++.+.++|.... ..+|+++...|++++|++.|+++... .
T Consensus 69 ~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~--~---- 142 (1157)
T PRK11447 69 FRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNG--A---- 142 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccC--C----
Confidence 34567899999999999999998874322 34578899999999999999988611 0
Q ss_pred hhhhhhcccccccCCCCCCCCCCCCCCCcchhHHHHHHHHHHHhhhhHHhhCChHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 005603 104 RAVVERTRPLRKHRSKGEKADSVPPPGLMSLHSISLLLEAILLKAKSLEELGHCKEAAKECKIILDIVESGLPNGMPEGF 183 (688)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 183 (688)
|+ ... +..+. ...+....|++++|+..+++++.. .|..
T Consensus 143 ------------------------p~----~~~--la~~y---~~~~~~~~g~~~~A~~~L~~ll~~--------~P~~- 180 (1157)
T PRK11447 143 ------------------------PP----ELD--LAVEY---WRLVAKLPAQRPEAINQLQRLNAD--------YPGN- 180 (1157)
T ss_pred ------------------------CC----ChH--HHHHH---HHHHhhCCccHHHHHHHHHHHHHh--------CCCC-
Confidence 11 000 01111 112223569999999999998875 3331
Q ss_pred CccccHHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHhhCCCCCCCh----------------hhHHHHHH----------
Q 005603 184 GEDCKLQEMFHKALELLPHLWIKAGLLEEAIIAYRRALVKPWNLDP----------------KKVASVQR---------- 237 (688)
Q Consensus 184 ~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~----------------~~~~~~~~---------- 237 (688)
..+...++.++...|++++|+..+++++..+..... .....++.
T Consensus 181 ----------~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~ 250 (1157)
T PRK11447 181 ----------TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDS 250 (1157)
T ss_pred ----------HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchH
Confidence 124456888899999999999999999875321000 00000000
Q ss_pred -HHHHHHHhcCccC-CCCC-c-cccCCCccCCCchHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 005603 238 -DLAVTLLYGGVEA-RLPP-E-LKVWGPIAPKDNVEEAILLLLILMEKVASKEMEWDAEIMDHLTYALSVTGQFELLAEY 313 (688)
Q Consensus 238 -~~a~~ll~~~~~~-~~~~-~-~~~~~~~~~~~~~eea~~~l~~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 313 (688)
..+...+...... ..|. . ......+...+++++|+..+ +.++...|.++.++..+|.++.+.|++++|+..
T Consensus 251 ~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l-----~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~ 325 (1157)
T PRK11447 251 VAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPEL-----QQAVRANPKDSEALGALGQAYSQQGDRARAVAQ 325 (1157)
T ss_pred HHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHH-----HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 0000001000000 0011 0 11123456688999999886 667788999999999999999999999999999
Q ss_pred HHHhcCCCCCCHH--------------HHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHH
Q 005603 314 VEQALPGIYNRAE--------------RWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGIC 379 (688)
Q Consensus 314 ~~~~l~~~p~~~~--------------~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~ 379 (688)
|+++++..|++.. ....+|.++...|++++|+..|++++ ...|.. ..++..+|.+
T Consensus 326 l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al---------~~~P~~--~~a~~~Lg~~ 394 (1157)
T PRK11447 326 FEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQAR---------QVDNTD--SYAVLGLGDV 394 (1157)
T ss_pred HHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------HhCCCC--HHHHHHHHHH
Confidence 9999999987643 12345888999999999999999997 334444 5788999999
Q ss_pred HHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH-----------------------------------
Q 005603 380 YGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLE----------------------------------- 424 (688)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~----------------------------------- 424 (688)
+...|++ ++|+..|+++++.+|.+..++..++.+
T Consensus 395 ~~~~g~~-----------~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~ 463 (1157)
T PRK11447 395 AMARKDY-----------AAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDR 463 (1157)
T ss_pred HHHCCCH-----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhH
Confidence 9999999 999999999999999988776555443
Q ss_pred -------HHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHH
Q 005603 425 -------HAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQI 497 (688)
Q Consensus 425 -------~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~ 497 (688)
+...|++++|+..|+++++.+|+++ .+++.+|.++...|++++|+..+++++...| .++..++.++..+.
T Consensus 464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~-~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P--~~~~~~~a~al~l~ 540 (1157)
T PRK11447 464 LAQQAEALENQGKWAQAAELQRQRLALDPGSV-WLTYRLAQDLRQAGQRSQADALMRRLAQQKP--NDPEQVYAYGLYLS 540 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHH
Confidence 4467999999999999999999998 9999999999999999999999999999999 78888888888888
Q ss_pred HcCChHHHHHHHHHHHHH----------------------------------------HHhhHHhhhhcc---------c
Q 005603 498 AQEQPKQAIGTYRILLAM----------------------------------------IQAQRELHSKNF---------H 528 (688)
Q Consensus 498 ~~g~~~~A~~~~~~al~~----------------------------------------~~~~~~~~~~~~---------~ 528 (688)
..+++++|+..++++... .|.+......++ .
T Consensus 541 ~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~ 620 (1157)
T PRK11447 541 GSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYA 620 (1157)
T ss_pred hCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 889988888887764211 111111111111 1
Q ss_pred cccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005603 529 KTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAI 608 (688)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 608 (688)
.+...+.+.+...|.++.++..++.+|...|++++|+..++++++..|+++.++..+|.++...|++++|+..|++++..
T Consensus 621 ~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 621 AARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 45567778888899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCH------HHHHHHHHHHHHhCCCChHHHHHHHHHHHH---hCCCCHHHH
Q 005603 609 EPDYI------PSIISTAEILMKLGRQSMPIARSFLMNALR---LEPTNHDAW 652 (688)
Q Consensus 609 ~p~~~------~~~~~la~~~~~~g~~~~~~A~~~~~~al~---~~p~~~~~~ 652 (688)
.|+++ ..+..+|.++...|+++ +|+..|++++. +.|..+...
T Consensus 701 ~~~~~~~~~~a~~~~~~a~~~~~~G~~~--~A~~~y~~Al~~~~~~~~~p~~~ 751 (1157)
T PRK11447 701 AKSQPPSMESALVLRDAARFEAQTGQPQ--QALETYKDAMVASGITPTRPQDN 751 (1157)
T ss_pred CccCCcchhhHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhcCCCCCCCCCc
Confidence 76543 35667899999999999 99999999986 457777653
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.2e-33 Score=311.12 Aligned_cols=393 Identities=16% Similarity=0.119 Sum_probs=316.7
Q ss_pred HHHHHHHHhHHHHHHcCCHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHhcCccCCCCCccccCCCccCCCchHHH
Q 005603 192 MFHKALELLPHLWIKAGLLEEAIIAYRRALVKPWNLDPKKVASVQRDLAVTLLYGGVEARLPPELKVWGPIAPKDNVEEA 271 (688)
Q Consensus 192 ~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~eea 271 (688)
.....+...|..+++.|++++|+..|++++...|
T Consensus 125 ~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p---------------------------------------------- 158 (615)
T TIGR00990 125 KYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKP---------------------------------------------- 158 (615)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----------------------------------------------
Confidence 3455677889999999999999999999987732
Q ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHh
Q 005603 272 ILLLLILMEKVASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKD 351 (688)
Q Consensus 272 ~~~l~~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 351 (688)
++..+..+|.+|...|++++|+..+++++..+|++..+|+.+|.+|...|++++|+..|..+
T Consensus 159 ------------------~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~ 220 (615)
T TIGR00990 159 ------------------DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTAS 220 (615)
T ss_pred ------------------chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 23346667778888888888888888888888888888888888888888888887766554
Q ss_pred HHH--------HH-------------hHhhhcccchhhHHHHHHHHHHHHHhh--------------------------h
Q 005603 352 QVS--------RG-------------VIQSTTSQKEHFLAEAYKFLGICYGNV--------------------------A 384 (688)
Q Consensus 352 l~~--------~~-------------~~~~~~~~~~~~~~~~~~~lg~~~~~~--------------------------~ 384 (688)
... .. +...+...+.. ...+..+|..+... +
T Consensus 221 ~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 298 (615)
T TIGR00990 221 CIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPEN--LPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLG 298 (615)
T ss_pred HHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHH
Confidence 300 00 00000111110 00111122211100 0
Q ss_pred hhccchHHhhHHHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Q 005603 385 RKSISDTERVFFQKEALESLNCAFLN---EREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILS 461 (688)
Q Consensus 385 ~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~ 461 (688)
.. .......+.+++|+..|++++.. .|....++..+|.++...|++++|+..++++++.+|... ..|..+|.++.
T Consensus 299 ~~-~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~-~~~~~la~~~~ 376 (615)
T TIGR00990 299 LK-SPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT-QSYIKRASMNL 376 (615)
T ss_pred HH-HHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHH
Confidence 00 00001124569999999999976 477788999999999999999999999999999999998 99999999999
Q ss_pred HcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCC
Q 005603 462 ADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVK 541 (688)
Q Consensus 462 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (688)
..|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..|++++.+.|+
T Consensus 377 ~~g~~~eA~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~----------------------- 431 (615)
T TIGR00990 377 ELGDPDKAEEDFDKALKLNS--EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD----------------------- 431 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-----------------------
Confidence 99999999999999999999 88999999999999999999999999999999776
Q ss_pred cchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH------
Q 005603 542 NLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPS------ 615 (688)
Q Consensus 542 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~------ 615 (688)
+..++..+|.++...|++++|+..|++++...|+++.++..+|.++..+|++++|+..|++++.+.|+....
T Consensus 432 --~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~ 509 (615)
T TIGR00990 432 --FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP 509 (615)
T ss_pred --CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHH
Confidence 688899999999999999999999999999999999999999999999999999999999999999875332
Q ss_pred HHHHHHHHH-HhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccCC
Q 005603 616 IISTAEILM-KLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKLS 681 (688)
Q Consensus 616 ~~~la~~~~-~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 681 (688)
+...+.++. ..|+++ +|+..+++++.++|++..++..+|.++...|++++|+.+|++++++.++
T Consensus 510 l~~~a~~~~~~~~~~~--eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 510 LINKALALFQWKQDFI--EAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHHHHHhhhHH--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 233333343 468888 9999999999999999999999999999999999999999999998775
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=2.9e-33 Score=308.14 Aligned_cols=439 Identities=14% Similarity=0.072 Sum_probs=330.1
Q ss_pred HHHHhhhHhhhcCCHHHHHhhhhcCCCCccccchhhhhhhhcccccccCCCCCCCCCCCCCCCcchhHHHHHHHHHHHhh
Q 005603 69 ARALLGRLEYQRGNYDAALQVFQGIDIVSLTPRMTRAVVERTRPLRKHRSKGEKADSVPPPGLMSLHSISLLLEAILLKA 148 (688)
Q Consensus 69 a~~llg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 148 (688)
+...+|..++..|+|++|+..|+++. .+. |+ ...++.+|
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al--~~~----------------------------p~-----------~~~~~n~a 167 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAI--ECK----------------------------PD-----------PVYYSNRA 167 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH--hcC----------------------------Cc-----------hHHHHHHH
Confidence 34467999999999999999999886 111 21 12467889
Q ss_pred hhHHhhCChHHHHHHHHHHHHHHHhcCCCCCCCCCCccccHHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHhhCCCCCCC
Q 005603 149 KSLEELGHCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKALELLPHLWIKAGLLEEAIIAYRRALVKPWNLD 228 (688)
Q Consensus 149 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~ 228 (688)
.|+.++|++++|+..|..++.. .|+ ..+++..+|.+|...|++++|+..|..++..++..+
T Consensus 168 ~~~~~l~~~~~Ai~~~~~al~l--------~p~-----------~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~ 228 (615)
T TIGR00990 168 ACHNALGDWEKVVEDTTAALEL--------DPD-----------YSKALNRRANAYDGLGKYADALLDLTASCIIDGFRN 228 (615)
T ss_pred HHHHHhCCHHHHHHHHHHHHHc--------CCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence 9999999999999999999985 232 346888899999999999999999988877633211
Q ss_pred hhhHHHHHHHHHHHHHhcCccCCCCCccccCCCccCCCchHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhcCCHH
Q 005603 229 PKKVASVQRDLAVTLLYGGVEARLPPELKVWGPIAPKDNVEEAILLLLILMEKVASKEMEWDAEIMDHLTYALSVTGQFE 308 (688)
Q Consensus 229 ~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~eea~~~l~~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~ 308 (688)
......+...+.. .+.. .....+...|.+...+..++..+ ......
T Consensus 229 ~~~~~~~~~~l~~----------------------------~a~~-----~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~ 274 (615)
T TIGR00990 229 EQSAQAVERLLKK----------------------------FAES-----KAKEILETKPENLPSVTFVGNYL-QSFRPK 274 (615)
T ss_pred HHHHHHHHHHHHH----------------------------HHHH-----HHHHHHhcCCCCCCCHHHHHHHH-HHccCC
Confidence 1111101000000 0000 01223344555544445555433 222223
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHH---HcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhh
Q 005603 309 LLAEYVEQALPGIYNRAERWYILALCYS---AAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVAR 385 (688)
Q Consensus 309 ~A~~~~~~~l~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~ 385 (688)
.....++.....++.....+..++..+. ..++|++|+..|++++ ......+. ...++..+|.++..+|+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al------~~~~~~~~--~a~a~~~lg~~~~~~g~ 346 (615)
T TIGR00990 275 PRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKAL------DLGKLGEK--EAIALNLRGTFKCLKGK 346 (615)
T ss_pred cchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHH------hcCCCChh--hHHHHHHHHHHHHHcCC
Confidence 3334445555566665556666665443 3478889999999887 21111232 26788889999999999
Q ss_pred hccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCC
Q 005603 386 KSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQR 465 (688)
Q Consensus 386 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~ 465 (688)
+ ++|+..|++++.++|.+...++.+|.++...|++++|+..++++++.+|+++ .++..+|.++...|+
T Consensus 347 ~-----------~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~ 414 (615)
T TIGR00990 347 H-----------LEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDP-DIYYHRAQLHFIKGE 414 (615)
T ss_pred H-----------HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCC
Confidence 8 9999999999999999999999999999999999999999999999999988 999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchH
Q 005603 466 LKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEI 545 (688)
Q Consensus 466 ~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (688)
+++|+..|+++++..| ++...+..+|.++...|++++|+..|++++...|+ ++
T Consensus 415 ~~~A~~~~~kal~l~P--~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-------------------------~~ 467 (615)
T TIGR00990 415 FAQAGKDYQKSIDLDP--DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-------------------------AP 467 (615)
T ss_pred HHHHHHHHHHHHHcCc--cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------------------------Ch
Confidence 9999999999999998 78888899999999999999999999999988665 68
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHH------HHHHH-HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 005603 546 ATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSW------HTTGM-LFEAQSQYKEALVSFSISLAIEPDYIPSIIS 618 (688)
Q Consensus 546 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------~~lg~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 618 (688)
.++..+|.++...|++++|+..|++++.+.|.+...+ ...+. ++...|++++|+..+++++.++|++..++..
T Consensus 468 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~ 547 (615)
T TIGR00990 468 DVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVAT 547 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 8888999999999999999999999999888653322 22233 3344689999999999999999999888999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCCCHH
Q 005603 619 TAEILMKLGRQSMPIARSFLMNALRLEPTNHD 650 (688)
Q Consensus 619 la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~ 650 (688)
+|.++.+.|+++ +|+.+|++++++.+...+
T Consensus 548 la~~~~~~g~~~--eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 548 MAQLLLQQGDVD--EALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHccCHH--HHHHHHHHHHHHhccHHH
Confidence 999999999988 999999999988876544
No 10
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=2.8e-32 Score=304.31 Aligned_cols=255 Identities=10% Similarity=-0.038 Sum_probs=210.8
Q ss_pred HHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005603 398 KEALESLNCAFLNERE--DPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDF 475 (688)
Q Consensus 398 ~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 475 (688)
..+...+.+++...|. ++.+++.+|.++.. +++.+|+..+.+++...|++ .....+|.++...|++++|+..+++
T Consensus 458 ~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~--~~~L~lA~al~~~Gr~eeAi~~~rk 534 (987)
T PRK09782 458 ADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDA--WQHRAVAYQAYQVEDYATALAAWQK 534 (987)
T ss_pred hhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCch--HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5566777777777788 88999999999987 78888999999999998875 4466778888899999999999999
Q ss_pred HHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHH
Q 005603 476 SLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIY 555 (688)
Q Consensus 476 al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 555 (688)
++...| . ...+..+|.++...|++++|+..+++++...|. ....+..++...
T Consensus 535 a~~~~p--~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-------------------------~~~l~~~La~~l 586 (987)
T PRK09782 535 ISLHDM--S-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-------------------------DNALYWWLHAQR 586 (987)
T ss_pred HhccCC--C-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-------------------------cHHHHHHHHHHH
Confidence 877655 3 345678889999999999999999999887554 455555566666
Q ss_pred HHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHH
Q 005603 556 MKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIAR 635 (688)
Q Consensus 556 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~ 635 (688)
...|++++|+..|+++++.+|+ +.++..+|.++.+.|++++|+..|++++..+|+++.++.++|.++...|+++ +|+
T Consensus 587 ~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~e--eAi 663 (987)
T PRK09782 587 YIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIA--QSR 663 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH--HHH
Confidence 6678888888888888888885 8888888888888888888888888888888888888888888888888887 888
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccCCCCCCC
Q 005603 636 SFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKLSAPVQS 686 (688)
Q Consensus 636 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 686 (688)
..|+++++.+|+++.+++++|.++...|++++|+.+|+++++++|++....
T Consensus 664 ~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~ 714 (987)
T PRK09782 664 EMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALIT 714 (987)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhh
Confidence 888888888888888888888888888888888888888888888876554
No 11
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-32 Score=285.40 Aligned_cols=548 Identities=15% Similarity=0.133 Sum_probs=424.1
Q ss_pred hhhhhhhhhhhhcccHHHHHHHhh--hHhhhcCCHHHHHhhhhcCC--CCccccchhhhhhhhccccc---ccCCCCCCC
Q 005603 51 VDEAESTLKEALSLNYEEARALLG--RLEYQRGNYDAALQVFQGID--IVSLTPRMTRAVVERTRPLR---KHRSKGEKA 123 (688)
Q Consensus 51 ~~~A~~~l~~~l~~~~~~a~~llg--~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 123 (688)
++.|-..|.-++.-+|.++.+||| ++.|.+|||..|+.+|.+++ .....|.++..+.--.+.+. ++...-+.+
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ra 225 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERA 225 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHH
Confidence 488888888888888888888886 47788899999999998853 22222222221111000000 000000000
Q ss_pred CCCCCCCCcchhHH-----------------HHH----------HHHHHHhhhhHHhhCChHHHHHHHHHHHHHHHhcCC
Q 005603 124 DSVPPPGLMSLHSI-----------------SLL----------LEAILLKAKSLEELGHCKEAAKECKIILDIVESGLP 176 (688)
Q Consensus 124 ~~~~~~~~~~~~~~-----------------~~~----------~e~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 176 (688)
-.-+|.++..+-.+ +++ +.++..++.-++-.|+|+.+......++.-.
T Consensus 226 lqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t----- 300 (1018)
T KOG2002|consen 226 LQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT----- 300 (1018)
T ss_pred HhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh-----
Confidence 00001111111111 000 1133334444555566666655554444321
Q ss_pred CCCCCCCCccccHHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHhcCccCCCCCcc
Q 005603 177 NGMPEGFGEDCKLQEMFHKALELLPHLWIKAGLLEEAIIAYRRALVKPWNLDPKKVASVQRDLAVTLLYGGVEARLPPEL 256 (688)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~ 256 (688)
....+...+...+|..|-.+|++++|..+|..++...++ ....+ ..
T Consensus 301 -----------~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d--~~~l~---------------------~~ 346 (1018)
T KOG2002|consen 301 -----------ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADND--NFVLP---------------------LV 346 (1018)
T ss_pred -----------hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCC--Ccccc---------------------cc
Confidence 112245667888999999999999999999999998432 11111 11
Q ss_pred ccCCCccCCCchHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhcC----CHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 005603 257 KVWGPIAPKDNVEEAILLLLILMEKVASKEMEWDAEIMDHLTYALSVTG----QFELLAEYVEQALPGIYNRAERWYILA 332 (688)
Q Consensus 257 ~~~~~~~~~~~~eea~~~l~~~~~~~~l~~~p~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~l~~~p~~~~~~~~la 332 (688)
.++..|..+|.+++++..+ +.++...|++..++..||..|...+ ..+.|..++.+++...|.+.++|..+|
T Consensus 347 GlgQm~i~~~dle~s~~~f-----Ekv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~la 421 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCF-----EKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELA 421 (1018)
T ss_pred chhHHHHHhchHHHHHHHH-----HHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 2334677889999999876 7788999999999999999999887 678899999999999999999999999
Q ss_pred HHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHc--
Q 005603 333 LCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLN-- 410 (688)
Q Consensus 333 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-- 410 (688)
..+....-+.. +..|.+++ +.+......+.++.+..+|..+...|.+ .+|...|.+++..
T Consensus 422 ql~e~~d~~~s-L~~~~~A~------d~L~~~~~~ip~E~LNNvaslhf~~g~~-----------~~A~~~f~~A~~~~~ 483 (1018)
T KOG2002|consen 422 QLLEQTDPWAS-LDAYGNAL------DILESKGKQIPPEVLNNVASLHFRLGNI-----------EKALEHFKSALGKLL 483 (1018)
T ss_pred HHHHhcChHHH-HHHHHHHH------HHHHHcCCCCCHHHHHhHHHHHHHhcCh-----------HHHHHHHHHHhhhhh
Confidence 99887666555 99999987 3322222224479999999999999999 9999999999865
Q ss_pred ---CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 005603 411 ---ERED-----PEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGS 482 (688)
Q Consensus 411 ---~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 482 (688)
+++. ....|++|.++...++++.|.+.|..+++..|+.. +++..+|.+....++..+|..+++.++..+.
T Consensus 484 ~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YI-d~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~- 561 (1018)
T KOG2002|consen 484 EVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYI-DAYLRLGCMARDKNNLYEASLLLKDALNIDS- 561 (1018)
T ss_pred hhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhH-HHHHHhhHHHHhccCcHHHHHHHHHHHhccc-
Confidence 2222 23589999999999999999999999999999998 9999999888899999999999999999998
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHH-----
Q 005603 483 MDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMK----- 557 (688)
Q Consensus 483 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----- 557 (688)
.++.++..+|.++.....+..|.+-|+..+.... ...++.+...||++|+.
T Consensus 562 -~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~-----------------------~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 562 -SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTS-----------------------TKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred -CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhc-----------------------cCCchhHHHHhhHHHHHHhccc
Confidence 8999999999999999999999999988887522 22467788888888774
Q ss_pred -------cCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCC
Q 005603 558 -------LGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQS 630 (688)
Q Consensus 558 -------~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 630 (688)
.+.+++|+.+|.+++..+|.|..+-+.+|.++...|++.+|+..|.++.+.-.+...+|.++|.||..+|+|.
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~ 697 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYR 697 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999887788899999999999999999
Q ss_pred hHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccCCCCCCCCC
Q 005603 631 MPIARSFLMNALRLE--PTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKLSAPVQSFV 688 (688)
Q Consensus 631 ~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~f~ 688 (688)
.|++.|+.+++.. .+++.+...||.++...|++.+|.+...+|+.+.|.++...|+
T Consensus 698 --~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN 755 (1018)
T KOG2002|consen 698 --LAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFN 755 (1018)
T ss_pred --HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhH
Confidence 9999999999864 4678999999999999999999999999999999999998875
No 12
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.9e-31 Score=273.10 Aligned_cols=549 Identities=18% Similarity=0.118 Sum_probs=417.1
Q ss_pred cchhhhhhhhhhhhcccH-HHHHHHh-hhHhhhcCC--HHHHHhhhhcCCCCccccchhhhhhhhcccccccCCCCCCCC
Q 005603 49 IQVDEAESTLKEALSLNY-EEARALL-GRLEYQRGN--YDAALQVFQGIDIVSLTPRMTRAVVERTRPLRKHRSKGEKAD 124 (688)
Q Consensus 49 g~~~~A~~~l~~~l~~~~-~~a~~ll-g~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (688)
.....|...|..+-.++- ++.+.+. |..+...|. ++.|...|..+. ...|.+.+
T Consensus 108 e~~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl--~~sp~Nil-------------------- 165 (1018)
T KOG2002|consen 108 ELFDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVL--KQSPDNIL-------------------- 165 (1018)
T ss_pred HHHHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHH--hhCCcchH--------------------
Confidence 456677778887777763 3333332 222223333 699999999886 33444333
Q ss_pred CCCCCCCcchhHHHHHHHHHHHhhhhHHhhCChHHHHHHHHHHHHHHHhcCCCCCCCCCCccccHHHHHHHHHHHhHHHH
Q 005603 125 SVPPPGLMSLHSISLLLEAILLKAKSLEELGHCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKALELLPHLW 204 (688)
Q Consensus 125 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~ 204 (688)
. ++.+|...+..|+|-.|+..|+.+|.+ .|...|+. .+ ..|.|+
T Consensus 166 --------~----------LlGkA~i~ynkkdY~~al~yyk~al~i----np~~~aD~-----rI---------gig~Cf 209 (1018)
T KOG2002|consen 166 --------A----------LLGKARIAYNKKDYRGALKYYKKALRI----NPACKADV-----RI---------GIGHCF 209 (1018)
T ss_pred --------H----------HHHHHHHHhccccHHHHHHHHHHHHhc----CcccCCCc-----cc---------hhhhHH
Confidence 2 245677888899999999999998875 33333432 22 255788
Q ss_pred HHcCCHHHHHHHHHHhhCCCCCCChhhHH--HH--------HHHHHHHHHhcCccCC--CCC-ccccCCCccCCCchHHH
Q 005603 205 IKAGLLEEAIIAYRRALVKPWNLDPKKVA--SV--------QRDLAVTLLYGGVEAR--LPP-ELKVWGPIAPKDNVEEA 271 (688)
Q Consensus 205 ~~~g~~~eA~~~y~~al~~~~~~~~~~~~--~~--------~~~~a~~ll~~~~~~~--~~~-~~~~~~~~~~~~~~eea 271 (688)
.+.|+.+.|+..|.++++.+|.......+ -+ -...+..++....... .|. ...+.+.|.-+++++.+
T Consensus 210 ~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v 289 (1018)
T KOG2002|consen 210 WKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERV 289 (1018)
T ss_pred HhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHH
Confidence 89999999999999999997631111111 01 1122333333332222 232 45677888889999988
Q ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHH
Q 005603 272 ILLLLILMEKVASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNR-AERWYILALCYSAAGQNEAALNLLKK 350 (688)
Q Consensus 272 ~~~l~~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~ 350 (688)
..+..-..... ...+--...++.+|.++...|+|+.|..+|-++++.+|++ .-.++.+|..++..|+++.|...|.+
T Consensus 290 ~~la~~ai~~t--~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEk 367 (1018)
T KOG2002|consen 290 WHLAEHAIKNT--ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEK 367 (1018)
T ss_pred HHHHHHHHHhh--hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHH
Confidence 87653321111 1112234569999999999999999999999999999998 77889999999999999999999999
Q ss_pred hHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 005603 351 DQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRN 430 (688)
Q Consensus 351 ~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 430 (688)
++ ...|+. ..+...||.+|...+.. ....++|..++.+++...|.+.++|..++.++....-
T Consensus 368 v~---------k~~p~~--~etm~iLG~Lya~~~~~-------~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~ 429 (1018)
T KOG2002|consen 368 VL---------KQLPNN--YETMKILGCLYAHSAKK-------QEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDP 429 (1018)
T ss_pred HH---------HhCcch--HHHHHHHHhHHHhhhhh-------hHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcCh
Confidence 97 344444 58888999998877511 1122889999999999999999999999999887665
Q ss_pred HHHHHHHHHHHHhh-----cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----cCC---CCcHHHHHHHHHHHH
Q 005603 431 VEAAFDYAIMYSDT-----VAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDE-----AGS---MDQLELLRLKAVLQI 497 (688)
Q Consensus 431 ~~~A~~~~~~~l~~-----~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~---~~~~~~~~~la~~~~ 497 (688)
+.. +..|..++.. .+- +.+.+.++|..++..|++.+|...|.+++.. +++ ..+....+++|.++.
T Consensus 430 ~~s-L~~~~~A~d~L~~~~~~i-p~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E 507 (1018)
T KOG2002|consen 430 WAS-LDAYGNALDILESKGKQI-PPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLE 507 (1018)
T ss_pred HHH-HHHHHHHHHHHHHcCCCC-CHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHH
Confidence 555 9999988843 233 3389999999999999999999999999876 110 022346899999999
Q ss_pred HcCChHHHHHHHHHHHHHHHhhHHhhhhccc---------cccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHH
Q 005603 498 AQEQPKQAIGTYRILLAMIQAQRELHSKNFH---------KTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICT 568 (688)
Q Consensus 498 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 568 (688)
..++++.|.+.|..++...|...+.+..++- ++...+...+.....++.+|..+|.++....+|..|.+-|
T Consensus 508 ~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f 587 (1018)
T KOG2002|consen 508 ELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKF 587 (1018)
T ss_pred hhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHH
Confidence 9999999999999999999998876655431 3445566677777888999999999999999999999977
Q ss_pred HHHHhcCC--CChhHHHHHHHHHHH------------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHH
Q 005603 569 EKAKSIEF--YSPGSWHTTGMLFEA------------QSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIA 634 (688)
Q Consensus 569 ~~al~~~p--~~~~~~~~lg~~~~~------------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A 634 (688)
...++.-. .++.+...||.++.+ .+.+++|++.|.++|+.+|.+..+-..+|.++...|++. +|
T Consensus 588 ~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~--~A 665 (1018)
T KOG2002|consen 588 ETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFS--EA 665 (1018)
T ss_pred HHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCch--HH
Confidence 77766433 345667778887653 456889999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccc
Q 005603 635 RSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELK 679 (688)
Q Consensus 635 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 679 (688)
+..|.++.+.-.+++++|.++|.||..+|+|..|++.|+.++...
T Consensus 666 ~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf 710 (1018)
T KOG2002|consen 666 RDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKF 710 (1018)
T ss_pred HHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999877888999999999999999999999999998753
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=8.2e-31 Score=287.22 Aligned_cols=347 Identities=14% Similarity=0.022 Sum_probs=296.2
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhh
Q 005603 289 WDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHF 368 (688)
Q Consensus 289 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 368 (688)
.+..-....+....+.|++.+|...++.++...|+++++++.+|.+....|++++|+..|++++ ...|+.
T Consensus 40 ~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l---------~~~P~~- 109 (656)
T PRK15174 40 GNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLL---------AVNVCQ- 109 (656)
T ss_pred ccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHH---------HhCCCC-
Confidence 3444556677788888999999999999999999999999999999999999999999999986 444555
Q ss_pred HHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 005603 369 LAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGN 448 (688)
Q Consensus 369 ~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 448 (688)
+.++..+|.++...|++ ++|+..|++++.++|+++.++..++.++...|++++|+..+++++...|++
T Consensus 110 -~~a~~~la~~l~~~g~~-----------~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~ 177 (656)
T PRK15174 110 -PEDVLLVASVLLKSKQY-----------ATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR 177 (656)
T ss_pred -hHHHHHHHHHHHHcCCH-----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC
Confidence 67888899999999998 999999999999999999999999999999999999999999888888888
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccc
Q 005603 449 SGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFH 528 (688)
Q Consensus 449 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 528 (688)
+ ..+..++ .+...|++++|+..+++++...|. ........++.++...|++++|+..+++++...|+
T Consensus 178 ~-~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~-~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~---------- 244 (656)
T PRK15174 178 G-DMIATCL-SFLNKSRLPEDHDLARALLPFFAL-ERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD---------- 244 (656)
T ss_pred H-HHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCC-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----------
Confidence 7 7766654 478889999999999998887652 23344456678888899999999999999887555
Q ss_pred cccccccccccCCcchHHHHHHHHHHHHHcCChhH----HHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 005603 529 KTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPD----AEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSI 604 (688)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 604 (688)
++.++..+|.++...|++++ |+..|++++..+|+++.++..+|.++...|++++|+..+++
T Consensus 245 ---------------~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~ 309 (656)
T PRK15174 245 ---------------GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQ 309 (656)
T ss_pred ---------------CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 68888899999999999886 78999999999999999999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccCCCCC
Q 005603 605 SLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKLSAPV 684 (688)
Q Consensus 605 al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 684 (688)
++..+|+++.++..+|.++...|+++ +|+..|++++..+|+++..+..+|.++...|++++|+..|+++++++|++..
T Consensus 310 al~l~P~~~~a~~~La~~l~~~G~~~--eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~ 387 (656)
T PRK15174 310 SLATHPDLPYVRAMYARALRQVGQYT--AASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP 387 (656)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch
Confidence 99999999999999999999999988 9999999999999988877777888899999999999999999999888765
Q ss_pred CCC
Q 005603 685 QSF 687 (688)
Q Consensus 685 ~~f 687 (688)
.+|
T Consensus 388 ~~~ 390 (656)
T PRK15174 388 QSF 390 (656)
T ss_pred hhH
Confidence 443
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=1e-28 Score=275.78 Aligned_cols=252 Identities=10% Similarity=-0.038 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005603 398 KEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSL 477 (688)
Q Consensus 398 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 477 (688)
.+|+..|.+++...|++. ....+|..+...|++++|+..+++++...|. . ..+..+|.++...|++++|+.++++++
T Consensus 493 ~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~-~a~~~la~all~~Gd~~eA~~~l~qAL 569 (987)
T PRK09782 493 GVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS-N-EDLLAAANTAQAAGNGAARDRWLQQAE 569 (987)
T ss_pred HHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-c-HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345555666665555433 2444455555666666666666665544333 2 445555666666666666666666666
Q ss_pred hhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHH
Q 005603 478 DEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMK 557 (688)
Q Consensus 478 ~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 557 (688)
...| .....+..++......|++++|+..|++++...|+ +.++..+|.++.+
T Consensus 570 ~l~P--~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~--------------------------~~a~~~LA~~l~~ 621 (987)
T PRK09782 570 QRGL--GDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS--------------------------ANAYVARATIYRQ 621 (987)
T ss_pred hcCC--ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC--------------------------HHHHHHHHHHHHH
Confidence 6555 44444444444444456666666666666655332 4555666666666
Q ss_pred cCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 005603 558 LGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSF 637 (688)
Q Consensus 558 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~ 637 (688)
.|++++|+..|++++.++|+++.++.++|.++...|++++|+..|+++++.+|+++.++.++|.++...|+++ +|+..
T Consensus 622 lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~--eA~~~ 699 (987)
T PRK09782 622 RHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMA--ATQHY 699 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH--HHHHH
Confidence 6666666666666666666666666666666666666666666666666666666666666666666666655 66666
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccCCC
Q 005603 638 LMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKLSA 682 (688)
Q Consensus 638 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 682 (688)
|+++++++|++..+....|.+.....+++.|.+.++++..++|..
T Consensus 700 l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~ 744 (987)
T PRK09782 700 ARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDS 744 (987)
T ss_pred HHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 666666666666666666666666666666666666666655554
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=1.8e-29 Score=276.66 Aligned_cols=347 Identities=12% Similarity=0.033 Sum_probs=311.3
Q ss_pred CCchHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHH
Q 005603 265 KDNVEEAILLLLILMEKVASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAA 344 (688)
Q Consensus 265 ~~~~eea~~~l~~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 344 (688)
.|+.++|..++ ...+...|.++.+++.++.+....|++++|+..|++++..+|+++.++..+|.++...|++++|
T Consensus 55 ~g~~~~A~~l~-----~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~A 129 (656)
T PRK15174 55 KDETDVGLTLL-----SDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATV 129 (656)
T ss_pred cCCcchhHHHh-----HHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH
Confidence 45666777664 6778899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005603 345 LNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLE 424 (688)
Q Consensus 345 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 424 (688)
+..|++++ ...|+. ..++..+|.++...|++ ++|+..+++++...|+++.++..++ .
T Consensus 130 i~~l~~Al---------~l~P~~--~~a~~~la~~l~~~g~~-----------~eA~~~~~~~~~~~P~~~~a~~~~~-~ 186 (656)
T PRK15174 130 ADLAEQAW---------LAFSGN--SQIFALHLRTLVLMDKE-----------LQAISLARTQAQEVPPRGDMIATCL-S 186 (656)
T ss_pred HHHHHHHH---------HhCCCc--HHHHHHHHHHHHHCCCh-----------HHHHHHHHHHHHhCCCCHHHHHHHH-H
Confidence 99999997 334544 68899999999999999 9999999999999999998887764 4
Q ss_pred HHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHH
Q 005603 425 HAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQ 504 (688)
Q Consensus 425 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~ 504 (688)
+...|++++|+..++++++..|.........++.++...|++++|+..+++++...| ++..++..+|.++...|++++
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p--~~~~~~~~Lg~~l~~~G~~~e 264 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL--DGAALRRSLGLAYYQSGRSRE 264 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCchh
Confidence 889999999999999999987644315556678899999999999999999999999 889999999999999999986
Q ss_pred ----HHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChh
Q 005603 505 ----AIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPG 580 (688)
Q Consensus 505 ----A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 580 (688)
|+..|++++...|+ ++.++..+|.++...|++++|+..+++++..+|+++.
T Consensus 265 A~~~A~~~~~~Al~l~P~-------------------------~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~ 319 (656)
T PRK15174 265 AKLQAAEHWRHALQFNSD-------------------------NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPY 319 (656)
T ss_pred hHHHHHHHHHHHHhhCCC-------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 89999999999666 7899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005603 581 SWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISK 660 (688)
Q Consensus 581 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 660 (688)
++..+|.++...|++++|+..|++++..+|++...+..+|.++...|+++ +|+..|+++++.+|++.
T Consensus 320 a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~d--eA~~~l~~al~~~P~~~----------- 386 (656)
T PRK15174 320 VRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTS--EAESVFEHYIQARASHL----------- 386 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHH--HHHHHHHHHHHhChhhc-----------
Confidence 99999999999999999999999999999999888888899999999998 99999999999999875
Q ss_pred HcCCHHHHHHHHHHHHcccC
Q 005603 661 MEGSLQQAADYFQAAYELKL 680 (688)
Q Consensus 661 ~~g~~~~A~~~~~~al~l~p 680 (688)
...+++|+..|.++++.-+
T Consensus 387 -~~~~~ea~~~~~~~~~~~~ 405 (656)
T PRK15174 387 -PQSFEEGLLALDGQISAVN 405 (656)
T ss_pred -hhhHHHHHHHHHHHHHhcC
Confidence 2344566666666666543
No 16
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.1e-28 Score=234.88 Aligned_cols=395 Identities=14% Similarity=0.143 Sum_probs=313.7
Q ss_pred HHHHHHHhHHHHHHcCCHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHhcCccCCCCCccccCCCccCCCchHHHH
Q 005603 193 FHKALELLPHLWIKAGLLEEAIIAYRRALVKPWNLDPKKVASVQRDLAVTLLYGGVEARLPPELKVWGPIAPKDNVEEAI 272 (688)
Q Consensus 193 ~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~eea~ 272 (688)
...++...|+-++++|+|++||.+|..|+...
T Consensus 114 ~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~------------------------------------------------ 145 (606)
T KOG0547|consen 114 YAAALKTKGNKFFRNKKYDEAIKYYTQAIELC------------------------------------------------ 145 (606)
T ss_pred HHHHHHhhhhhhhhcccHHHHHHHHHHHHhcC------------------------------------------------
Confidence 44566678888999999999999999998873
Q ss_pred HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhH
Q 005603 273 LLLLILMEKVASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQ 352 (688)
Q Consensus 273 ~~l~~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 352 (688)
|+.|..|...+-||...|++++.++...++++++|+...+++..+..+...|++++|+....-..
T Consensus 146 ---------------p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~c 210 (606)
T KOG0547|consen 146 ---------------PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLC 210 (606)
T ss_pred ---------------CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHH
Confidence 23356677788999999999999999999999999999999999999999999999986655432
Q ss_pred ------------HHHHhHhh---------hcccchhhHHHHHH---HHHHHHHhh-----hhhccchHHh----------
Q 005603 353 ------------VSRGVIQS---------TTSQKEHFLAEAYK---FLGICYGNV-----ARKSISDTER---------- 393 (688)
Q Consensus 353 ------------~~~~~~~~---------~~~~~~~~~~~~~~---~lg~~~~~~-----~~~~~~~~~~---------- 393 (688)
.+.+.+.. +..+..+..+.+.+ ..|...... .....++...
T Consensus 211 i~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~ 290 (606)
T KOG0547|consen 211 ILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKG 290 (606)
T ss_pred HhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhh
Confidence 11111111 11000000011111 111110000 0000000000
Q ss_pred -hHHHHHHHHHHHHHHHcC----CCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHH
Q 005603 394 -VFFQKEALESLNCAFLNE----RED---------PEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALI 459 (688)
Q Consensus 394 -~~~~~~A~~~~~~al~~~----p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~ 459 (688)
...+.+|...+.+..... ..+ ..++...|..++-.|++-.|...++.+++++|... ..+..++.+
T Consensus 291 ~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~ 369 (606)
T KOG0547|consen 291 LEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAA 369 (606)
T ss_pred CchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHH
Confidence 112344554444443111 112 56778889999999999999999999999999998 889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhcccccccccccccc
Q 005603 460 LSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPS 539 (688)
Q Consensus 460 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (688)
|...++.++-...|+++.+++| .++++|+.+|.+++.++++++|+.-|++++.++|+
T Consensus 370 y~d~~~~~~~~~~F~~A~~ldp--~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe--------------------- 426 (606)
T KOG0547|consen 370 YADENQSEKMWKDFNKAEDLDP--ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE--------------------- 426 (606)
T ss_pred HhhhhccHHHHHHHHHHHhcCC--CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh---------------------
Confidence 9999999999999999999999 89999999999999999999999999999999877
Q ss_pred CCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CH
Q 005603 540 VKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPD------YI 613 (688)
Q Consensus 540 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~ 613 (688)
+...+..++.+..+++++++++..|+.+....|+.++.+...|.++..++++++|++.|.+++++.|. ++
T Consensus 427 ----~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~ 502 (606)
T KOG0547|consen 427 ----NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNA 502 (606)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999998 66
Q ss_pred HHHHHHHHHHHH-hCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccC
Q 005603 614 PSIISTAEILMK-LGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKL 680 (688)
Q Consensus 614 ~~~~~la~~~~~-~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 680 (688)
..+...|.+..+ .+++. .|+.+++++++++|....++..||.+..++|+.++|+++|++++.+..
T Consensus 503 ~plV~Ka~l~~qwk~d~~--~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 503 APLVHKALLVLQWKEDIN--QAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred hhhhhhhHhhhchhhhHH--HHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 666666655544 36666 999999999999999999999999999999999999999999987643
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.97 E-value=1e-27 Score=268.61 Aligned_cols=422 Identities=14% Similarity=0.003 Sum_probs=200.9
Q ss_pred hhHHhhCChHHHHHHHHHHHHHHHhcCCCCCCCCCCccccHHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHhhCCCCCCC
Q 005603 149 KSLEELGHCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKALELLPHLWIKAGLLEEAIIAYRRALVKPWNLD 228 (688)
Q Consensus 149 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~ 228 (688)
.+..-.|++++|+..|..+... .|. -..++..++.++...|++++|+..|++++...|+..
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~--------~~~-----------~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~ 83 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVH--------MQL-----------PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQND 83 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhh--------CCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 4455679999999888877642 111 234566778889999999999999999988743311
Q ss_pred hhhHHHHHHHHHHHHHhcCccCCCCCccccCCCccCCCchHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhcCCHH
Q 005603 229 PKKVASVQRDLAVTLLYGGVEARLPPELKVWGPIAPKDNVEEAILLLLILMEKVASKEMEWDAEIMDHLTYALSVTGQFE 308 (688)
Q Consensus 229 ~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~eea~~~l~~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~ 308 (688)
. . ...++.+ +...+++++|+..+ +.++...|.++. +..+|.++...|+++
T Consensus 84 ~-a----~~~la~~-------------------l~~~g~~~eA~~~l-----~~~l~~~P~~~~-~~~la~~l~~~g~~~ 133 (765)
T PRK10049 84 D-Y----QRGLILT-------------------LADAGQYDEALVKA-----KQLVSGAPDKAN-LLALAYVYKRAGRHW 133 (765)
T ss_pred H-H----HHHHHHH-------------------HHHCCCHHHHHHHH-----HHHHHhCCCCHH-HHHHHHHHHHCCCHH
Confidence 1 0 1112222 12234555665554 444555666666 666666666666666
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchh---hHHHHHHHHHHHHHhhhh
Q 005603 309 LLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEH---FLAEAYKFLGICYGNVAR 385 (688)
Q Consensus 309 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~lg~~~~~~~~ 385 (688)
+|+..+++++...|+++.++..++.++...|..++|+..++++. . .|.. ........+.........
T Consensus 134 ~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~---------~-~p~~~~~l~~~~~~~~~r~~~~~~~ 203 (765)
T PRK10049 134 DELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDAN---------L-TPAEKRDLEADAAAELVRLSFMPTR 203 (765)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCC---------C-CHHHHHHHHHHHHHHHHHhhccccc
Confidence 66666666666666666666666666666666666666665553 1 1111 000011111111111000
Q ss_pred hccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHH--HH-----HHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHH
Q 005603 386 KSISDTERVFFQKEALESLNCAFLNEREDPEMMY--YL-----GLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLAL 458 (688)
Q Consensus 386 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--~l-----a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~ 458 (688)
...++....++|+..++.+++..|.++.... .. ...+...|++++|+..|+++++..|..+..+...+|.
T Consensus 204 ---~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~ 280 (765)
T PRK10049 204 ---SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVAS 280 (765)
T ss_pred ---ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHH
Confidence 0111111124455555555543333322211 10 1112344555555555555544433222122233344
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcCCC--CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccc
Q 005603 459 ILSADQRLKDAQSIVDFSLDEAGSM--DQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSE 536 (688)
Q Consensus 459 ~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 536 (688)
++...|++++|+.+|++++...|.. ........++.++...|++++|+..++++....|.. ..
T Consensus 281 ~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~---------------~~ 345 (765)
T PRK10049 281 AYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPF---------------LR 345 (765)
T ss_pred HHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCce---------------Ee
Confidence 5555555555555555544444310 012333444444455555555555555444442220 00
Q ss_pred cc---cCCcc--hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005603 537 AP---SVKNL--EIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPD 611 (688)
Q Consensus 537 ~~---~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 611 (688)
.. ...|+ ...++..++.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++.++|+
T Consensus 346 ~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd 425 (765)
T PRK10049 346 LYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR 425 (765)
T ss_pred ecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Confidence 00 00111 12233444444444444444444444444444444444444444444444444444444444444444
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCH
Q 005603 612 YIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNH 649 (688)
Q Consensus 612 ~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~ 649 (688)
+...++.+|.++...|+++ +|...++++++..|+++
T Consensus 426 ~~~l~~~~a~~al~~~~~~--~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 426 NINLEVEQAWTALDLQEWR--QMDVLTDDVVAREPQDP 461 (765)
T ss_pred ChHHHHHHHHHHHHhCCHH--HHHHHHHHHHHhCCCCH
Confidence 4444444444444444444 44444444444444444
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.96 E-value=4.2e-26 Score=255.62 Aligned_cols=387 Identities=11% Similarity=-0.028 Sum_probs=259.7
Q ss_pred HHHHhhhhHHhhCChHHHHHHHHHHHHHHHhcCCCCCCCCCCccccHHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHhhC
Q 005603 143 AILLKAKSLEELGHCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKALELLPHLWIKAGLLEEAIIAYRRALV 222 (688)
Q Consensus 143 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~ 222 (688)
++...|.++..+|++++|+..|++++.. .|.+ ..+...++.++...|++++|+..+++++.
T Consensus 51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~--------~P~~-----------~~a~~~la~~l~~~g~~~eA~~~l~~~l~ 111 (765)
T PRK10049 51 GYAAVAVAYRNLKQWQNSLTLWQKALSL--------EPQN-----------DDYQRGLILTLADAGQYDEALVKAKQLVS 111 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4455677888888888888888887764 2321 11233566777788888888888888887
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCccCCCCCccccCCCccCCCchHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 005603 223 KPWNLDPKKVASVQRDLAVTLLYGGVEARLPPELKVWGPIAPKDNVEEAILLLLILMEKVASKEMEWDAEIMDHLTYALS 302 (688)
Q Consensus 223 ~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~eea~~~l~~~~~~~~l~~~p~~~~~~~~l~~~~~ 302 (688)
..|+... ...++.+ +...++.++|+..+ +.++...|.++.++..++.++.
T Consensus 112 ~~P~~~~------~~~la~~-------------------l~~~g~~~~Al~~l-----~~al~~~P~~~~~~~~la~~l~ 161 (765)
T PRK10049 112 GAPDKAN------LLALAYV-------------------YKRAGRHWDELRAM-----TQALPRAPQTQQYPTEYVQALR 161 (765)
T ss_pred hCCCCHH------HHHHHHH-------------------HHHCCCHHHHHHHH-----HHHHHhCCCCHHHHHHHHHHHH
Confidence 7543221 1112222 22345667777665 5667788999999999999999
Q ss_pred hcCCHHHHHHHHHHhcCCCCCCHHH-----HHHHHHHHHHcCCcHHH-HHHHHHhHHHHHhHhhhcccchhhHHHHHHHH
Q 005603 303 VTGQFELLAEYVEQALPGIYNRAER-----WYILALCYSAAGQNEAA-LNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFL 376 (688)
Q Consensus 303 ~~g~~~~A~~~~~~~l~~~p~~~~~-----~~~la~~~~~~g~~~~A-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 376 (688)
..|..+.|+..++++.. .|+.... ...+.......+..+.. .....+++ -.+
T Consensus 162 ~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al---------------------~~~ 219 (765)
T PRK10049 162 NNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRAL---------------------AQY 219 (765)
T ss_pred HCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHH---------------------HHH
Confidence 99999999999998876 6642110 01111111111100000 00001111 111
Q ss_pred HHHHHh------------hhhhc-cchHHhhHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005603 377 GICYGN------------VARKS-ISDTERVFFQKEALESLNCAFLNEREDP-EMMYYLGLEHAVQRNVEAAFDYAIMYS 442 (688)
Q Consensus 377 g~~~~~------------~~~~~-~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l 442 (688)
-..... ..... ....-..+++++|+..|+++++..|..+ .+...+|.++...|++++|+..|++++
T Consensus 220 ~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l 299 (765)
T PRK10049 220 DALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELF 299 (765)
T ss_pred HHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 111100 00000 0011345778999999999998865433 244446999999999999999999999
Q ss_pred hhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChH----HHHHHHHHHHHH
Q 005603 443 DTVAGNS---GRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPK----QAIGTYRILLAM 515 (688)
Q Consensus 443 ~~~p~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~----~A~~~~~~al~~ 515 (688)
+.+|.+. ......++.++...|++++|+..++++....| .....+. .....++ .+....-.++..
T Consensus 300 ~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P--~~~~~~~------~~~~~p~~~~~~a~~~~a~~l~~ 371 (765)
T PRK10049 300 YHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSP--PFLRLYG------SPTSIPNDDWLQGQSLLSQVAKY 371 (765)
T ss_pred hcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCC--ceEeecC------CCCCCCCchHHHHHHHHHHHHHH
Confidence 9887662 25677788889999999999999999999888 3322111 1112222 222222222221
Q ss_pred HHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCH
Q 005603 516 IQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQY 595 (688)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 595 (688)
..+ ..++...+.+.+...|.++.++..+|.++...|++++|+..+++++.++|++..+++.+|.++...|++
T Consensus 372 ~g~--------~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~ 443 (765)
T PRK10049 372 SND--------LPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEW 443 (765)
T ss_pred cCC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCH
Confidence 111 113455677778889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHH
Q 005603 596 KEALVSFSISLAIEPDYIPSI 616 (688)
Q Consensus 596 ~~A~~~~~~al~~~p~~~~~~ 616 (688)
++|+..++++++..|+++.+.
T Consensus 444 ~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 444 RQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999998554
No 19
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.9e-24 Score=208.90 Aligned_cols=440 Identities=14% Similarity=0.093 Sum_probs=314.3
Q ss_pred HHHHHHhhhHhhhcCCHHHHHhhhhcCCCCccccchhhhhhhhcccccccCCCCCCCCCCCCCCCcchhHHHHHHHHHHH
Q 005603 67 EEARALLGRLEYQRGNYDAALQVFQGIDIVSLTPRMTRAVVERTRPLRKHRSKGEKADSVPPPGLMSLHSISLLLEAILL 146 (688)
Q Consensus 67 ~~a~~llg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 146 (688)
+.+.-..|.=+|.+|+|++||++|..+. .+.|.. | . .+ -+
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI--~l~p~e-------------------------p---i-FY---------sN 154 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAI--ELCPDE-------------------------P---I-FY---------SN 154 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHH--hcCCCC-------------------------c---h-hh---------hh
Confidence 3344467999999999999999999987 222211 1 1 12 24
Q ss_pred hhhhHHhhCChHHHHHHHHHHHHHHHhcCCCCCCCCCCccccHHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHhhCCCCC
Q 005603 147 KAKSLEELGHCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKALELLPHLWIKAGLLEEAIIAYRRALVKPWN 226 (688)
Q Consensus 147 ~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~ 226 (688)
++-||..+|+|++-++.|-+.|+. .| + +.+++.+-+..+.+.|+++||+--.--..-. ..
T Consensus 155 raAcY~~lgd~~~Vied~TkALEl--------~P-----~------Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~-~~ 214 (606)
T KOG0547|consen 155 RAACYESLGDWEKVIEDCTKALEL--------NP-----D------YVKALLRRASAHEQLGKFDEALFDVTVLCIL-EG 214 (606)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhc--------Cc-----H------HHHHHHHHHHHHHhhccHHHHHHhhhHHHHh-hh
Confidence 688999999999999999999986 22 2 7789999999999999999997443221111 01
Q ss_pred CChh----hHHHHHHHHHHHHHhcCcc-CCCCCccccCCCccCCCchHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHH
Q 005603 227 LDPK----KVASVQRDLAVTLLYGGVE-ARLPPELKVWGPIAPKDNVEEAILLLLILMEKVASKEMEWDAEIMDHLTYAL 301 (688)
Q Consensus 227 ~~~~----~~~~~~~~~a~~ll~~~~~-~~~~~~~~~~~~~~~~~~~eea~~~l~~~~~~~~l~~~p~~~~~~~~l~~~~ 301 (688)
++.. ...++.+..+..-+..+.. ..+| .-|...+.-...-
T Consensus 215 F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p-----------------------------------~lPS~~fi~syf~ 259 (606)
T KOG0547|consen 215 FQNASIEPMAERVLKKQAMKKAKEKLKENRPP-----------------------------------VLPSATFIASYFG 259 (606)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhcccCCC-----------------------------------CCCcHHHHHHHHh
Confidence 1111 1222233333322222221 1111 1111111000000
Q ss_pred HhcCCHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHHcC---CcHHHHHHHHHhHHHHHhHhhh--cccchhhHHHHHHH
Q 005603 302 SVTGQFELLAEYVEQALPGIYNR-AERWYILALCYSAAG---QNEAALNLLKKDQVSRGVIQST--TSQKEHFLAEAYKF 375 (688)
Q Consensus 302 ~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~ 375 (688)
.-..+.. ....++.+ .+.-..-+.-+...+ .|..|...+.+..+........ ...+....+.++..
T Consensus 260 sF~~~~~--------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~ 331 (606)
T KOG0547|consen 260 SFHADPK--------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLL 331 (606)
T ss_pred hcccccc--------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHH
Confidence 0000000 00000000 111111111111122 3445555444443100000000 00111234678888
Q ss_pred HHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHH
Q 005603 376 LGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKL 455 (688)
Q Consensus 376 lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 455 (688)
.|..+...|+. ..|...|.+++.++|.+...+..++.+|....+..+-...|.++..++|.++ ++++.
T Consensus 332 ~gtF~fL~g~~-----------~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~-dvYyH 399 (606)
T KOG0547|consen 332 RGTFHFLKGDS-----------LGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENP-DVYYH 399 (606)
T ss_pred hhhhhhhcCCc-----------hhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCC-chhHh
Confidence 89999999999 9999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhcccccccccc
Q 005603 456 LALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITS 535 (688)
Q Consensus 456 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 535 (688)
.|.+++-++++++|+.-|++++.++| .+...+..++.+.+++++++++...|+.+....|+
T Consensus 400 RgQm~flL~q~e~A~aDF~Kai~L~p--e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~----------------- 460 (606)
T KOG0547|consen 400 RGQMRFLLQQYEEAIADFQKAISLDP--ENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN----------------- 460 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------------
Confidence 99999999999999999999999999 89999999999999999999999999999999877
Q ss_pred ccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC------ChhHHHHHHHHHH-HcCCHHHHHHHHHHHHhc
Q 005603 536 EAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFY------SPGSWHTTGMLFE-AQSQYKEALVSFSISLAI 608 (688)
Q Consensus 536 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~ 608 (688)
.++++...|.++..+++|++|++.|.+++.+.|. ++..+...|.+.. -.+++.+|+..+++++++
T Consensus 461 --------~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~ 532 (606)
T KOG0547|consen 461 --------CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIEL 532 (606)
T ss_pred --------CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHcc
Confidence 6999999999999999999999999999999998 5555555555432 358999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHH
Q 005603 609 EPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHD 650 (688)
Q Consensus 609 ~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~ 650 (688)
+|....++..+|.+..++|+.+ +|+++|+++..+..+..+
T Consensus 533 Dpkce~A~~tlaq~~lQ~~~i~--eAielFEksa~lArt~~E 572 (606)
T KOG0547|consen 533 DPKCEQAYETLAQFELQRGKID--EAIELFEKSAQLARTESE 572 (606)
T ss_pred CchHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999 999999999987654433
No 20
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.6e-26 Score=232.59 Aligned_cols=305 Identities=20% Similarity=0.138 Sum_probs=274.0
Q ss_pred HHHHHHHHH--HHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHH
Q 005603 327 RWYILALCY--SAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESL 404 (688)
Q Consensus 327 ~~~~la~~~--~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~ 404 (688)
.+..+|..| ..+-+..+|+..|.+ + .....+. ..+...+|..|..++++ ++|..+|
T Consensus 319 llr~~~~~~~~~s~y~~~~A~~~~~k-l--------p~h~~nt--~wvl~q~GrayFEl~~Y-----------~~a~~~F 376 (638)
T KOG1126|consen 319 LLRGLGEGYRSLSQYNCREALNLFEK-L--------PSHHYNT--GWVLSQLGRAYFELIEY-----------DQAERIF 376 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-h--------HHhcCCc--hHHHHHHHHHHHHHHHH-----------HHHHHHH
Confidence 444455444 445567899999999 4 1233333 58889999999999999 9999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Q 005603 405 NCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMD 484 (688)
Q Consensus 405 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 484 (688)
+.+-+.+|...+-.-.+..++....+--+---..+..++.+|..| +.|..+|.+|.-+++++.|++.|++++.++| .
T Consensus 377 ~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sP-esWca~GNcfSLQkdh~~Aik~f~RAiQldp--~ 453 (638)
T KOG1126|consen 377 SLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSP-ESWCALGNCFSLQKDHDTAIKCFKRAIQLDP--R 453 (638)
T ss_pred HHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCc-HHHHHhcchhhhhhHHHHHHHHHHHhhccCC--c
Confidence 999999997766655556666666555555555677889999999 9999999999999999999999999999999 8
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHH
Q 005603 485 QLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDA 564 (688)
Q Consensus 485 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 564 (688)
...++..+|.=+.....+|.|...|+.++..+|+ +..+|+.+|.+|.++++++.|
T Consensus 454 faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-------------------------hYnAwYGlG~vy~Kqek~e~A 508 (638)
T KOG1126|consen 454 FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-------------------------HYNAWYGLGTVYLKQEKLEFA 508 (638)
T ss_pred cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-------------------------hhHHHHhhhhheeccchhhHH
Confidence 8999999999999999999999999999999887 799999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 005603 565 EICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRL 644 (688)
Q Consensus 565 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~ 644 (688)
+-.|++|++++|.+......+|.++.+.|+.++|+..|++|+.++|.++-..+..|.++..+++++ +|+..+++.-++
T Consensus 509 e~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~--eal~~LEeLk~~ 586 (638)
T KOG1126|consen 509 EFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYV--EALQELEELKEL 586 (638)
T ss_pred HHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchH--HHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccCCCC
Q 005603 645 EPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKLSAP 683 (688)
Q Consensus 645 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 683 (688)
-|++..+++.+|.+|.+.|+.+.|+..|.-|.+++|.-.
T Consensus 587 vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 587 VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 999999999999999999999999999999999999744
No 21
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.95 E-value=1.6e-24 Score=206.92 Aligned_cols=457 Identities=16% Similarity=0.105 Sum_probs=350.1
Q ss_pred hhCChHHHHHHHHHH----HHHHHhcCCCCCCCCCCccccHHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHhhCCCCCCC
Q 005603 153 ELGHCKEAAKECKII----LDIVESGLPNGMPEGFGEDCKLQEMFHKALELLPHLWIKAGLLEEAIIAYRRALVKPWNLD 228 (688)
Q Consensus 153 ~~g~~~~A~~~~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~ 228 (688)
..|+|.+|..-.+.. -..|...-..+.|+.+.-+ ..-..+..|+.-|....-+.||+..|+-++.....++
T Consensus 161 ~~~~~k~aldkakdagrker~lvk~req~~~~e~inld-----ltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~n 235 (840)
T KOG2003|consen 161 ECGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLD-----LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPN 235 (840)
T ss_pred hhhhHHHHHHHHHhcchhHHHHHHHHHhccchhhcccc-----chHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCC
Confidence 457888887654311 1112223345667655433 2234566777788888889999998887776521111
Q ss_pred hhhHHHHHHHHHHHHHhcCccCCCCCccccCCCccCCCchHHHHHHHHHHHHHHHhhhcCC-----cHHHHHHHHHHHHh
Q 005603 229 PKKVASVQRDLAVTLLYGGVEARLPPELKVWGPIAPKDNVEEAILLLLILMEKVASKEMEW-----DAEIMDHLTYALSV 303 (688)
Q Consensus 229 ~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~eea~~~l~~~~~~~~l~~~p~-----~~~~~~~l~~~~~~ 303 (688)
. ......+.+++..+.++.+|+..+ .+.+.+.|. ...++..+|..+.+
T Consensus 236 a----------------------g~lkmnigni~~kkr~fskaikfy-----rmaldqvpsink~~rikil~nigvtfiq 288 (840)
T KOG2003|consen 236 A----------------------GILKMNIGNIHFKKREFSKAIKFY-----RMALDQVPSINKDMRIKILNNIGVTFIQ 288 (840)
T ss_pred C----------------------ceeeeeecceeeehhhHHHHHHHH-----HHHHhhccccchhhHHHHHhhcCeeEEe
Confidence 0 001235677889999999999885 667777773 24578899999999
Q ss_pred cCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhH-------------------------------
Q 005603 304 TGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQ------------------------------- 352 (688)
Q Consensus 304 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l------------------------------- 352 (688)
.|+|+.|+..|+.+++..| +..+-++|..|++..|+-++-.+.|++++
T Consensus 289 ~gqy~dainsfdh~m~~~p-n~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~ 367 (840)
T KOG2003|consen 289 AGQYDDAINSFDHCMEEAP-NFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDH 367 (840)
T ss_pred cccchhhHhhHHHHHHhCc-cHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHH
Confidence 9999999999999999999 55666788999999999999999999998
Q ss_pred ----------HHHHhHhhh-----cc-cch------------------hhHHHHHHHHHHHHHhhhhhccchHHhhHHHH
Q 005603 353 ----------VSRGVIQST-----TS-QKE------------------HFLAEAYKFLGICYGNVARKSISDTERVFFQK 398 (688)
Q Consensus 353 ----------~~~~~~~~~-----~~-~~~------------------~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~ 398 (688)
.+++++-.. +. .++ .+....-...+.-+.+.|+ ++
T Consensus 368 lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d-----------~~ 436 (840)
T KOG2003|consen 368 LKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGD-----------IE 436 (840)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccC-----------HH
Confidence 011111000 00 000 0001111222233344444 49
Q ss_pred HHHHHHHHHHHcCCCC-HHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005603 399 EALESLNCAFLNERED-PEMMYYLGLEHAVQ--RNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDF 475 (688)
Q Consensus 399 ~A~~~~~~al~~~p~~-~~~~~~la~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 475 (688)
.|+++++-.-+.+... ..+-.+|..+++.+ .++..|..+...++..+..++ .+..+.|.+.+..|++++|.+.|+.
T Consensus 437 ~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~-~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 437 GAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNA-AALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCH-HHhhcCCceeeecCcHHHHHHHHHH
Confidence 9999887666555433 33455666666663 478899999999999999998 9999999999999999999999999
Q ss_pred HHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHH
Q 005603 476 SLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIY 555 (688)
Q Consensus 476 al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 555 (688)
++..+. ....+++++|..+..+|+.++|+++|-++-.+..+ +.+++..++.+|
T Consensus 516 al~nda--sc~ealfniglt~e~~~~ldeald~f~klh~il~n-------------------------n~evl~qianiy 568 (840)
T KOG2003|consen 516 ALNNDA--SCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN-------------------------NAEVLVQIANIY 568 (840)
T ss_pred HHcCch--HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh-------------------------hHHHHHHHHHHH
Confidence 998887 78899999999999999999999999988777555 688999999999
Q ss_pred HHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHH
Q 005603 556 MKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIAR 635 (688)
Q Consensus 556 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~ 635 (688)
..+.+..+|++++.++..+-|++|.++..+|.+|-+.|+-.+|.+++-...+..|.+.+....+|..|....-++ +|+
T Consensus 569 e~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~e--kai 646 (840)
T KOG2003|consen 569 ELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSE--KAI 646 (840)
T ss_pred HHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHH--HHH
Confidence 999999999999999999999999999999999999999999999998889999999999999998888887777 999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccCCCC
Q 005603 636 SFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKLSAP 683 (688)
Q Consensus 636 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 683 (688)
.+|+++--+.|+...-...++.|+.+.|+|++|.+.|+..-...|.+-
T Consensus 647 ~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedl 694 (840)
T KOG2003|consen 647 NYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDL 694 (840)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccch
Confidence 999999999998877777889999999999999999998888877653
No 22
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.8e-23 Score=199.68 Aligned_cols=417 Identities=15% Similarity=0.087 Sum_probs=324.6
Q ss_pred HHHHHHHHhHHHHHHcCCHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHhcCccCCCCCccccCCCccCCCchHHH
Q 005603 192 MFHKALELLPHLWIKAGLLEEAIIAYRRALVKPWNLDPKKVASVQRDLAVTLLYGGVEARLPPELKVWGPIAPKDNVEEA 271 (688)
Q Consensus 192 ~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~eea 271 (688)
...+-..+++..|+....++.|.-.++..... ...+...+..++.+...+. . .......+..+...-
T Consensus 76 ~~~~~~y~laks~fd~kEf~Raa~fL~~~~s~--------k~~FL~lysk~La~~kk~~--e---~~~~~l~~~~~~~~~ 142 (559)
T KOG1155|consen 76 VLEKDIYLLAKSYFDCKEFERAAFFLQNCKSK--------KSAFLRLYSKYLAGEKKSE--E---EMAELLGRLESFSRI 142 (559)
T ss_pred hhhcchhhhHhhhhhhHHHHHHHHHHHhcchH--------HHHHHHHHHHHHhhhHHHH--H---HHHHhhccchhhhhh
Confidence 55667778899999999999998777775442 1112222222222211110 0 000011111111111
Q ss_pred HHHHHHH--HHHHHhhhcCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Q 005603 272 ILLLLIL--MEKVASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLK 349 (688)
Q Consensus 272 ~~~l~~~--~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 349 (688)
...+..+ ..+..--....|+-.++..|.++.+.|....|+..|..++...|-...+|..|+.+... ++...
T Consensus 143 ~~~l~~L~~~le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~ 215 (559)
T KOG1155|consen 143 NSELIELNKPLESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILS 215 (559)
T ss_pred hhHHHHHhhHHHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHH
Confidence 1111100 01111112246788899999999999999999999999999999999999998876432 22222
Q ss_pred HhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHc
Q 005603 350 KDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLN-EREDPEMMYYLGLEHAVQ 428 (688)
Q Consensus 350 ~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~ 428 (688)
..+ ..-+.....-.-+.++.++...... ++++.-++..... -|...-.-...|.+...+
T Consensus 216 ~l~---------~~l~~~~h~M~~~F~~~a~~el~q~-----------~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~ 275 (559)
T KOG1155|consen 216 ILV---------VGLPSDMHWMKKFFLKKAYQELHQH-----------EEALQKKERLSSVGFPNSMYIKTQIAAASYNQ 275 (559)
T ss_pred HHH---------hcCcccchHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhccCCccHHHHHHHHHHHhhh
Confidence 221 1112111134556677888887787 9999999988877 688888888999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 005603 429 RNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGT 508 (688)
Q Consensus 429 g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~ 508 (688)
.++++|+..|+.+.+.+|-.. +-.-....+++-.++-.+---+.+.+..++. ..++....+|..|...++.++|+.+
T Consensus 276 rDfD~a~s~Feei~knDPYRl-~dmdlySN~LYv~~~~skLs~LA~~v~~idK--yR~ETCCiIaNYYSlr~eHEKAv~Y 352 (559)
T KOG1155|consen 276 RDFDQAESVFEEIRKNDPYRL-DDMDLYSNVLYVKNDKSKLSYLAQNVSNIDK--YRPETCCIIANYYSLRSEHEKAVMY 352 (559)
T ss_pred hhHHHHHHHHHHHHhcCCCcc-hhHHHHhHHHHHHhhhHHHHHHHHHHHHhcc--CCccceeeehhHHHHHHhHHHHHHH
Confidence 999999999999999999887 7777788887777665555555566666776 6788888999999999999999999
Q ss_pred HHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHH
Q 005603 509 YRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGML 588 (688)
Q Consensus 509 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 588 (688)
|+++++++|. ...+|..+|.-|..+.+...|+..|++|++++|.+..+|+.+|+.
T Consensus 353 FkRALkLNp~-------------------------~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 353 FKRALKLNPK-------------------------YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQA 407 (559)
T ss_pred HHHHHhcCcc-------------------------hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHH
Confidence 9999999777 699999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 005603 589 FEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQA 668 (688)
Q Consensus 589 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 668 (688)
|.-++.+.=|+-+|++|+...|++...|..+|.+|.++++.+ +|+++|.+++.....+..++..||.+|.+.++.++|
T Consensus 408 Yeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~--eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLE--EAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHH--HHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999999999999999999999998 999999999999988999999999999999999999
Q ss_pred HHHHHHHHcc
Q 005603 669 ADYFQAAYEL 678 (688)
Q Consensus 669 ~~~~~~al~l 678 (688)
..+|++.++.
T Consensus 486 a~~yek~v~~ 495 (559)
T KOG1155|consen 486 AQYYEKYVEV 495 (559)
T ss_pred HHHHHHHHHH
Confidence 9999999873
No 23
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.7e-24 Score=211.99 Aligned_cols=487 Identities=16% Similarity=0.098 Sum_probs=353.4
Q ss_pred ccCCCcchhhhhhhhhhhhcc--cHHHHHHHhhhHhhhcCCHHHHHhhhhcCCCCccccchhhhhhhhcccccccCCCCC
Q 005603 44 SKVDDIQVDEAESTLKEALSL--NYEEARALLGRLEYQRGNYDAALQVFQGIDIVSLTPRMTRAVVERTRPLRKHRSKGE 121 (688)
Q Consensus 44 ~~~~~g~~~~A~~~l~~~l~~--~~~~a~~llg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (688)
..+++-.+.-|.-.-.+...+ +|.++ +++|++++-.|.|..|......-....
T Consensus 25 ~~l~q~~y~~a~f~adkV~~l~~dp~d~-~~~aq~l~~~~~y~ra~~lit~~~le~------------------------ 79 (611)
T KOG1173|consen 25 DALMQHRYKTALFWADKVAGLTNDPADI-YWLAQVLYLGRQYERAAHLITTYKLEK------------------------ 79 (611)
T ss_pred HHHHHHhhhHHHHHHHHHHhccCChHHH-HHHHHHHHhhhHHHHHHHHHHHhhhhh------------------------
Confidence 455566666666555554444 34443 578999999999999998876443100
Q ss_pred CCCCCCCCCCcchhHHHHHHHHHHHhhhhHHhhCChHHHHHHHHHHHHHHH--hcCCCC----CCCCCCccccHHHHHHH
Q 005603 122 KADSVPPPGLMSLHSISLLLEAILLKAKSLEELGHCKEAAKECKIILDIVE--SGLPNG----MPEGFGEDCKLQEMFHK 195 (688)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~--~~~~~~----~~~~~~~~~~~~~~~~~ 195 (688)
++ .-+.++.+.|+.++.++++|....+..-.+.. +..+.. ...+.... ...-.++.
T Consensus 80 ----------~d-------~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~-~~~~~~es 141 (611)
T KOG1173|consen 80 ----------RD-------IACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGE-DLMINLES 141 (611)
T ss_pred ----------hh-------HHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccc-cccccchh
Confidence 00 12457789999999999999876663200100 111111 10000000 00111222
Q ss_pred H-HHHhHHHHHHcCCHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHhcCccCCCCCccccCC-Ccc-CCCchHHHH
Q 005603 196 A-LELLPHLWIKAGLLEEAIIAYRRALVKPWNLDPKKVASVQRDLAVTLLYGGVEARLPPELKVWG-PIA-PKDNVEEAI 272 (688)
Q Consensus 196 a-~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~-~~~-~~~~~eea~ 272 (688)
+ ..+-|.+|....+.++|...|++|+.. |..+...+.+.....++....+.. .+.+ -+. -.+..++-+
T Consensus 142 sic~lRgk~y~al~n~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~~-----ll~~l~~a~~~~ed~e~l 212 (611)
T KOG1173|consen 142 SICYLRGKVYVALDNREEARDKYKEALLA----DAKCFEAFEKLVSAHMLTAQEEFE-----LLESLDLAMLTKEDVERL 212 (611)
T ss_pred ceeeeeeehhhhhccHHHHHHHHHHHHhc----chhhHHHHHHHHHHHhcchhHHHH-----HHhcccHHhhhhhHHHHH
Confidence 2 234566788899999999999999998 455554443222211111100000 0000 000 000001111
Q ss_pred HHHHHH-------------HHHHHhhhcCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcC
Q 005603 273 LLLLIL-------------MEKVASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAG 339 (688)
Q Consensus 273 ~~l~~~-------------~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 339 (688)
..+... ..+..+-....++.++...+..++..++|.+..+.++..+..+|-++.++-...-|+...|
T Consensus 213 ~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~ 292 (611)
T KOG1173|consen 213 EILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELG 292 (611)
T ss_pred HHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhc
Confidence 111000 0011122223678899999999999999999999999999999988877765555999999
Q ss_pred CcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHH
Q 005603 340 QNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMY 419 (688)
Q Consensus 340 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 419 (688)
+..+=..+-.+++ ...|+. +..|+.+|..|...+++ .+|..+|.++..++|....+|.
T Consensus 293 ~~n~Lf~lsh~LV---------~~yP~~--a~sW~aVg~YYl~i~k~-----------seARry~SKat~lD~~fgpaWl 350 (611)
T KOG1173|consen 293 KSNKLFLLSHKLV---------DLYPSK--ALSWFAVGCYYLMIGKY-----------SEARRYFSKATTLDPTFGPAWL 350 (611)
T ss_pred ccchHHHHHHHHH---------HhCCCC--CcchhhHHHHHHHhcCc-----------HHHHHHHHHHhhcCccccHHHH
Confidence 9887666656664 444544 68899999999999999 9999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHc
Q 005603 420 YLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQ 499 (688)
Q Consensus 420 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~ 499 (688)
..|..+...|..++|+..|..+-++.|+.. .-...+|.-|...+++.-|..+|.+++.+.| .++-++..+|.+.+..
T Consensus 351 ~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P--~Dplv~~Elgvvay~~ 427 (611)
T KOG1173|consen 351 AFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLYLGMEYMRTNNLKLAEKFFKQALAIAP--SDPLVLHELGVVAYTY 427 (611)
T ss_pred HHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHHHHHHHHHhccHHHHHHHHHHHHhcCC--CcchhhhhhhheeehH
Confidence 999999999999999999999999999998 8889999999999999999999999999999 8999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCh
Q 005603 500 EQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSP 579 (688)
Q Consensus 500 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 579 (688)
+.+.+|..+|+.++...+.. ....+.-...+.+||.++.+++.+++|+.++++++.+.|.++
T Consensus 428 ~~y~~A~~~f~~~l~~ik~~------------------~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~ 489 (611)
T KOG1173|consen 428 EEYPEALKYFQKALEVIKSV------------------LNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDA 489 (611)
T ss_pred hhhHHHHHHHHHHHHHhhhc------------------cccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCch
Confidence 99999999999999654432 111223466799999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005603 580 GSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMK 625 (688)
Q Consensus 580 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 625 (688)
.++..+|.+|..+|+++.|++.|.+++.+.|++..+-..|+.+...
T Consensus 490 ~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 490 STHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999997766666655443
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=8.1e-24 Score=221.74 Aligned_cols=307 Identities=14% Similarity=-0.015 Sum_probs=252.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhH
Q 005603 290 DAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFL 369 (688)
Q Consensus 290 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 369 (688)
.....+..|..+...|++++|+..|++++..+|++..++..+|.++...|++++|+..+++++ . .+..+....
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l------~-~~~~~~~~~ 106 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLL------S-RPDLTREQR 106 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHh------c-CCCCCHHHH
Confidence 344566778999999999999999999999999999999999999999999999999999986 2 111122223
Q ss_pred HHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCc
Q 005603 370 AEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNS 449 (688)
Q Consensus 370 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 449 (688)
..++..+|.++...|++ ++|+..|+++++.+|.+..++..++.++...|++++|+..++++++..|.+.
T Consensus 107 ~~~~~~La~~~~~~g~~-----------~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 175 (389)
T PRK11788 107 LLALQELGQDYLKAGLL-----------DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSL 175 (389)
T ss_pred HHHHHHHHHHHHHCCCH-----------HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcc
Confidence 46788999999999999 9999999999999999999999999999999999999999999998887653
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhh
Q 005603 450 ----GRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSK 525 (688)
Q Consensus 450 ----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 525 (688)
...+..+|.++...|++++|+..++++++..| ....++..+|.++...|++++|++.+++++...|..
T Consensus 176 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~------ 247 (389)
T PRK11788 176 RVEIAHFYCELAQQALARGDLDAARALLKKALAADP--QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY------ 247 (389)
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh------
Confidence 12456788888899999999999999998888 677888889999999999999999999998876552
Q ss_pred ccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005603 526 NFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSIS 605 (688)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 605 (688)
...++..++.+|...|++++|+..+++++...|+... +..++.++...|++++|+..++++
T Consensus 248 ------------------~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~ 308 (389)
T PRK11788 248 ------------------LSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQ 308 (389)
T ss_pred ------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3566778888899999999999999998888887644 478888888899999999999988
Q ss_pred HhcCCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHH
Q 005603 606 LAIEPDYIPSIISTAEILMK--LGRQSMPIARSFLMNALR 643 (688)
Q Consensus 606 l~~~p~~~~~~~~la~~~~~--~g~~~~~~A~~~~~~al~ 643 (688)
++..|++......++..+.. .|+.. +++..+++.++
T Consensus 309 l~~~P~~~~~~~l~~~~~~~~~~g~~~--~a~~~~~~~~~ 346 (389)
T PRK11788 309 LRRHPSLRGFHRLLDYHLAEAEEGRAK--ESLLLLRDLVG 346 (389)
T ss_pred HHhCcCHHHHHHHHHHhhhccCCccch--hHHHHHHHHHH
Confidence 88888877555444433322 34666 77777766654
No 25
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=4.8e-25 Score=222.08 Aligned_cols=306 Identities=15% Similarity=0.086 Sum_probs=263.3
Q ss_pred HHHHHHHHHHHhcC--CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhH
Q 005603 292 EIMDHLTYALSVTG--QFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFL 369 (688)
Q Consensus 292 ~~~~~l~~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 369 (688)
.++..+|..+...- +..+|+..|++.....++....+.++|..|+..++|++|.++|+.+- ...|-.
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r---------~~~p~r-- 386 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVR---------RIEPYR-- 386 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhcccc--
Confidence 45556666655444 45899999999667778888888999999999999999999999984 222211
Q ss_pred HHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHH-HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 005603 370 AEAYKFLGICYGNVARKSISDTERVFFQKEALESLN-CAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGN 448 (688)
Q Consensus 370 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~-~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 448 (688)
....-....+++...+ +-++.++- ..+..+|..|+.|..+|.+|..+++++.|+++|+++++++|..
T Consensus 387 v~~meiyST~LWHLq~------------~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~f 454 (638)
T KOG1126|consen 387 VKGMEIYSTTLWHLQD------------EVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRF 454 (638)
T ss_pred ccchhHHHHHHHHHHh------------hHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCcc
Confidence 2222233344444444 33455444 4568899999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccc
Q 005603 449 SGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFH 528 (688)
Q Consensus 449 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 528 (688)
. -++..+|.=+.....++.|...|+.++..+| .+..+|+.+|.+|.++++++.|.-.|++|+.++|.
T Consensus 455 a-YayTLlGhE~~~~ee~d~a~~~fr~Al~~~~--rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~---------- 521 (638)
T KOG1126|consen 455 A-YAYTLLGHESIATEEFDKAMKSFRKALGVDP--RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS---------- 521 (638)
T ss_pred c-hhhhhcCChhhhhHHHHhHHHHHHhhhcCCc--hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc----------
Confidence 8 9999999999999999999999999999999 89999999999999999999999999999999776
Q ss_pred cccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005603 529 KTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAI 608 (688)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 608 (688)
+..+...+|.++.+.|+.++|+.+|++|+.++|.++...+..|.++...+++++|+..+++.-++
T Consensus 522 ---------------nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 522 ---------------NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred ---------------chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence 68889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHH
Q 005603 609 EPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHD 650 (688)
Q Consensus 609 ~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~ 650 (688)
.|+...++..+|.+|.+.|+.+ .|+..|.-|..++|.-..
T Consensus 587 vP~es~v~~llgki~k~~~~~~--~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 587 VPQESSVFALLGKIYKRLGNTD--LALLHFSWALDLDPKGAQ 626 (638)
T ss_pred CcchHHHHHHHHHHHHHHccch--HHHHhhHHHhcCCCccch
Confidence 9999999999999999999999 999999999999997554
No 26
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.94 E-value=2.2e-23 Score=199.33 Aligned_cols=488 Identities=17% Similarity=0.062 Sum_probs=348.9
Q ss_pred HHHhhhHhhhcCCHHHHHhhhhcCCCCccccchhhhhhhhcccccccCCCCCCCCCCCCCCCcchhHHHHHHHHHHHhhh
Q 005603 70 RALLGRLEYQRGNYDAALQVFQGIDIVSLTPRMTRAVVERTRPLRKHRSKGEKADSVPPPGLMSLHSISLLLEAILLKAK 149 (688)
Q Consensus 70 ~~llg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 149 (688)
.+.|+.-|-.+..+.+|+..|+-++...+-|+ .++ +. ...|.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~n-------------ag~--------------lk-----------mnign 245 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPN-------------AGI--------------LK-----------MNIGN 245 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCC-------------Cce--------------ee-----------eeecc
Confidence 44678888888999999999997763222221 111 11 13488
Q ss_pred hHHhhCChHHHHHHHHHHHHHHHhcCCCCCCCCCCccccHHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHhhCCCCCCCh
Q 005603 150 SLEELGHCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKALELLPHLWIKAGLLEEAIIAYRRALVKPWNLDP 229 (688)
Q Consensus 150 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~ 229 (688)
+++++.+|.+|++.|+..|+.|.++. ..+-.+.+..+|..+.+.|.|++||..|...++..||+-.
T Consensus 246 i~~kkr~fskaikfyrmaldqvpsin--------------k~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a 311 (840)
T KOG2003|consen 246 IHFKKREFSKAIKFYRMALDQVPSIN--------------KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIA 311 (840)
T ss_pred eeeehhhHHHHHHHHHHHHhhccccc--------------hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHh
Confidence 89999999999999999999755532 1246678888999999999999999999999998666322
Q ss_pred hhH-----------HHHHHHHHHHHHhcCccCCCCCccccCCCccCCC-chHHHHHHHHHHHHHHHhhhcCCcHHHHHHH
Q 005603 230 KKV-----------ASVQRDLAVTLLYGGVEARLPPELKVWGPIAPKD-NVEEAILLLLILMEKVASKEMEWDAEIMDHL 297 (688)
Q Consensus 230 ~~~-----------~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~-~~eea~~~l~~~~~~~~l~~~p~~~~~~~~l 297 (688)
... ....+.|..++--.+. +.....+...-.|.. .+.+++.--+. +..-+....+.+-+..-
T Consensus 312 ~~nl~i~~f~i~d~ekmkeaf~kli~ip~~---~dddkyi~~~ddp~~~ll~eai~nd~l---k~~ek~~ka~aek~i~t 385 (840)
T KOG2003|consen 312 ALNLIICAFAIGDAEKMKEAFQKLIDIPGE---IDDDKYIKEKDDPDDNLLNEAIKNDHL---KNMEKENKADAEKAIIT 385 (840)
T ss_pred hhhhhhhheecCcHHHHHHHHHHHhcCCCC---CCcccccCCcCCcchHHHHHHHhhHHH---HHHHHhhhhhHHHHHHH
Confidence 110 0011222222111111 000000100001111 11222211000 00111111111100000
Q ss_pred H---HHHHhcCCHHHHHHHHHHhcCCC---CCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHH
Q 005603 298 T---YALSVTGQFELLAEYVEQALPGI---YNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAE 371 (688)
Q Consensus 298 ~---~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 371 (688)
+ .+-...-+|...-+++-+.++.. |--.+.-.+.+-.+++.|+++.|+++++-.- ..++.....
T Consensus 386 a~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~----------~kdnk~~sa 455 (840)
T KOG2003|consen 386 AAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFE----------KKDNKTASA 455 (840)
T ss_pred HHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHH----------hccchhhHH
Confidence 0 00000111111112222222211 1122445667888999999999999987652 222222234
Q ss_pred HHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHH
Q 005603 372 AYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGR 451 (688)
Q Consensus 372 ~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 451 (688)
+-..|...+..+|-. ++.+|..+-..++.++..++.++.+.|.+.+..|++++|.+.|++++..+.... +
T Consensus 456 aa~nl~~l~flqggk---------~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~-e 525 (840)
T KOG2003|consen 456 AANNLCALRFLQGGK---------DFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT-E 525 (840)
T ss_pred HhhhhHHHHHHhccc---------chhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH-H
Confidence 455555555554321 138899999999999999999999999999999999999999999999888776 9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhcccccc
Q 005603 452 GWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTK 531 (688)
Q Consensus 452 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 531 (688)
+++++|..+..+|+.++|+++|-+.-.+-- ++..+++.++.+|..+.++.+|++++.++..+.|+
T Consensus 526 alfniglt~e~~~~ldeald~f~klh~il~--nn~evl~qianiye~led~aqaie~~~q~~slip~------------- 590 (840)
T KOG2003|consen 526 ALFNIGLTAEALGNLDEALDCFLKLHAILL--NNAEVLVQIANIYELLEDPAQAIELLMQANSLIPN------------- 590 (840)
T ss_pred HHHHhcccHHHhcCHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCC-------------
Confidence 999999999999999999999999877766 78999999999999999999999999999988666
Q ss_pred ccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005603 532 YITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPD 611 (688)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 611 (688)
++.++..+|.+|-+.|+-.+|.+|+-......|-+..+.-.+|..|....-+++|+.+|+++--+.|+
T Consensus 591 ------------dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 591 ------------DPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN 658 (840)
T ss_pred ------------CHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005603 612 YIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGS 664 (688)
Q Consensus 612 ~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 664 (688)
.......++.|+.+.|+|. +|...|+..-+..|.+.+.+..|..+.-.+|-
T Consensus 659 ~~kwqlmiasc~rrsgnyq--ka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQ--KAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHhcccHH--HHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9988899999999999999 99999999999999999998888888766663
No 27
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.4e-22 Score=193.40 Aligned_cols=364 Identities=15% Similarity=0.062 Sum_probs=280.3
Q ss_pred HHHHhHHHHHHcCCHHHHHHHHHHhhCC-CCCCChhhHHHHHHHHHHHHHhcCccCCCCCccccCCCccCCCchHHHHHH
Q 005603 196 ALELLPHLWIKAGLLEEAIIAYRRALVK-PWNLDPKKVASVQRDLAVTLLYGGVEARLPPELKVWGPIAPKDNVEEAILL 274 (688)
Q Consensus 196 a~~~l~~~~~~~g~~~eA~~~y~~al~~-~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~eea~~~ 274 (688)
.+.+-|.++.+.|....|+..|..++.. +|+-.. .+-+...+. ..+
T Consensus 166 llYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~A-----------WleL~~lit-----------------~~e----- 212 (559)
T KOG1155|consen 166 LLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSA-----------WLELSELIT-----------------DIE----- 212 (559)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHH-----------HHHHHHhhc-----------------hHH-----
Confidence 3566788999999999999999999876 333110 000000000 000
Q ss_pred HHHHHHHHHhhhcCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHh
Q 005603 275 LLILMEKVASKEMEWD--AEIMDHLTYALSVTGQFELLAEYVEQALPG-IYNRAERWYILALCYSAAGQNEAALNLLKKD 351 (688)
Q Consensus 275 l~~~~~~~~l~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 351 (688)
.........|.+ -..-..++.++....+.++++.-.+..... -|...-.-...|.+.....++++|+..|+.+
T Consensus 213 ----~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei 288 (559)
T KOG1155|consen 213 ----ILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEI 288 (559)
T ss_pred ----HHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 011122223322 222345677777778899999999888876 7888888888999999999999999999999
Q ss_pred HHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Q 005603 352 QVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNV 431 (688)
Q Consensus 352 l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 431 (688)
. ..+| .+..-.-....++....+. .+---.-+.+..++.-.++...-+|..|...++.
T Consensus 289 ~---------knDP--YRl~dmdlySN~LYv~~~~-----------skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eH 346 (559)
T KOG1155|consen 289 R---------KNDP--YRLDDMDLYSNVLYVKNDK-----------SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEH 346 (559)
T ss_pred H---------hcCC--CcchhHHHHhHHHHHHhhh-----------HHHHHHHHHHHHhccCCccceeeehhHHHHHHhH
Confidence 6 2233 2233334444544444442 2222233445577777888888899999999999
Q ss_pred HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005603 432 EAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRI 511 (688)
Q Consensus 432 ~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 511 (688)
++|+.+|+++++++|... .+|..+|.-|..+++...|++.|++|++++| .+..+|+.+|+.|..++.+.=|+-+|++
T Consensus 347 EKAv~YFkRALkLNp~~~-~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p--~DyRAWYGLGQaYeim~Mh~YaLyYfqk 423 (559)
T KOG1155|consen 347 EKAVMYFKRALKLNPKYL-SAWTLMGHEYVEMKNTHAAIESYRRAVDINP--RDYRAWYGLGQAYEIMKMHFYALYYFQK 423 (559)
T ss_pred HHHHHHHHHHHhcCcchh-HHHHHhhHHHHHhcccHHHHHHHHHHHhcCc--hhHHHHhhhhHHHHHhcchHHHHHHHHH
Confidence 999999999999999998 9999999999999999999999999999999 7899999999999999999999999999
Q ss_pred HHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 005603 512 LLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEA 591 (688)
Q Consensus 512 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 591 (688)
++..- |.++..|..||.+|.+.++.++|++||.+++.....+..++..+|.+|.+
T Consensus 424 A~~~k-------------------------PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~ 478 (559)
T KOG1155|consen 424 ALELK-------------------------PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEE 478 (559)
T ss_pred HHhcC-------------------------CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 99984 44899999999999999999999999999999988888999999999999
Q ss_pred cCCHHHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC
Q 005603 592 QSQYKEALVSFSISLA-------IEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTN 648 (688)
Q Consensus 592 ~g~~~~A~~~~~~al~-------~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~ 648 (688)
.++.++|..+|++.++ ..|....+...++.-+.+.++++ +|..+...++.-++..
T Consensus 479 l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~--~As~Ya~~~~~~~~e~ 540 (559)
T KOG1155|consen 479 LKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFD--EASYYATLVLKGETEC 540 (559)
T ss_pred HHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchH--HHHHHHHHHhcCCchH
Confidence 9999999999999887 35556677777899999999988 8888888777664443
No 28
>PLN03077 Protein ECB2; Provisional
Probab=99.94 E-value=1.7e-22 Score=231.80 Aligned_cols=488 Identities=13% Similarity=0.051 Sum_probs=362.5
Q ss_pred CCccCCCcchhhhhhhhhhhhcccHHHHHHHhhhHhhhcCCHHHHHhhhhcCCCCccccchhhhhhhhcccccccCCCCC
Q 005603 42 WDSKVDDIQVDEAESTLKEALSLNYEEARALLGRLEYQRGNYDAALQVFQGIDIVSLTPRMTRAVVERTRPLRKHRSKGE 121 (688)
Q Consensus 42 ~~~~~~~g~~~~A~~~l~~~l~~~~~~a~~llg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (688)
+..|...|++++|...|++....+. .++.-+-..|.+.|++++|+.+|+++...++.|..
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~~~d~-~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~------------------- 288 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMPRRDC-ISWNAMISGYFENGECLEGLELFFTMRELSVDPDL------------------- 288 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCc-chhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh-------------------
Confidence 3456667788888888777765543 23444556777788888888888777522222211
Q ss_pred CCCCCCCCCCcchhHHHHHHHHHHHhhhhHHhhCChHHHHHHHHHHHHHHHhcCCCCCCCCCCccccHHHHHHHHHHHhH
Q 005603 122 KADSVPPPGLMSLHSISLLLEAILLKAKSLEELGHCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKALELLP 201 (688)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~ 201 (688)
.++ ...-.++.+.|+.+.|.+.+..+... |..+ + ...+..+.
T Consensus 289 ----------~ty----------~~ll~a~~~~g~~~~a~~l~~~~~~~-------g~~~----d-------~~~~n~Li 330 (857)
T PLN03077 289 ----------MTI----------TSVISACELLGDERLGREMHGYVVKT-------GFAV----D-------VSVCNSLI 330 (857)
T ss_pred ----------hHH----------HHHHHHHHhcCChHHHHHHHHHHHHh-------CCcc----c-------hHHHHHHH
Confidence 111 11122344567777777666655442 2211 1 11233344
Q ss_pred HHHHHcCCHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHhcCccCCCCCccccCCCccCCCchHHHHHHHHHHHHH
Q 005603 202 HLWIKAGLLEEAIIAYRRALVKPWNLDPKKVASVQRDLAVTLLYGGVEARLPPELKVWGPIAPKDNVEEAILLLLILMEK 281 (688)
Q Consensus 202 ~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~eea~~~l~~~~~~ 281 (688)
..|.+.|++++|...|+++... +..++.. +...|...+++++|+.++. +
T Consensus 331 ~~y~k~g~~~~A~~vf~~m~~~----d~~s~n~-----------------------li~~~~~~g~~~~A~~lf~----~ 379 (857)
T PLN03077 331 QMYLSLGSWGEAEKVFSRMETK----DAVSWTA-----------------------MISGYEKNGLPDKALETYA----L 379 (857)
T ss_pred HHHHhcCCHHHHHHHHhhCCCC----CeeeHHH-----------------------HHHHHHhCCCHHHHHHHHH----H
Confidence 6778888888888888887543 2222221 1224666788899988873 3
Q ss_pred HHhhhcCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhh
Q 005603 282 VASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGI-YNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQS 360 (688)
Q Consensus 282 ~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 360 (688)
........|...+..+-.++...|+++.|.+.++.+.+.. ..+..++..+...|.+.|++++|.++|+++.
T Consensus 380 M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-------- 451 (857)
T PLN03077 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-------- 451 (857)
T ss_pred HHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC--------
Confidence 3333344556677777778999999999999999887654 3366788889999999999999999999884
Q ss_pred hcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005603 361 TTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIM 440 (688)
Q Consensus 361 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 440 (688)
. ++ ...|..+...|...|+. ++|+..|+++...-+.+...+..+-..+...|+.+.+.+.+..
T Consensus 452 -~--~d---~vs~~~mi~~~~~~g~~-----------~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 452 -E--KD---VISWTSIIAGLRLNNRC-----------FEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred -C--CC---eeeHHHHHHHHHHCCCH-----------HHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 1 11 35778888888889998 9999999999866566677777888888999999999999998
Q ss_pred HHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhH
Q 005603 441 YSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQR 520 (688)
Q Consensus 441 ~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 520 (688)
+++............+...|.+.|+.++|...|+.. + .+...|..+...|...|+.++|++.|+++...
T Consensus 515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~--~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~----- 583 (857)
T PLN03077 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----E--KDVVSWNILLTGYVAHGKGSMAVELFNRMVES----- 583 (857)
T ss_pred HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----C--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-----
Confidence 887654332266677889999999999999999886 3 46788999999999999999999999998874
Q ss_pred HhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHcCCHHHH
Q 005603 521 ELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFY--SPGSWHTTGMLFEAQSQYKEA 598 (688)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A 598 (688)
...| +..++..+...+.+.|++++|..+|+...+..+- +...|..+..++.+.|++++|
T Consensus 584 ------------------g~~P-d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA 644 (857)
T PLN03077 584 ------------------GVNP-DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA 644 (857)
T ss_pred ------------------CCCC-CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Confidence 1223 3566777778899999999999999998854332 356889999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 005603 599 LVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYE 677 (688)
Q Consensus 599 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 677 (688)
.+.+++. ...|+ +.+|..+-..+...|+.+ .+....+++++++|+++..+..++.+|...|++++|.+..+...+
T Consensus 645 ~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e--~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 645 YNFINKM-PITPD-PAVWGALLNACRIHRHVE--LGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred HHHHHHC-CCCCC-HHHHHHHHHHHHHcCChH--HHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 9999886 34554 667888878888888887 899999999999999999999999999999999999999987765
No 29
>PLN03077 Protein ECB2; Provisional
Probab=99.94 E-value=1.2e-22 Score=232.86 Aligned_cols=537 Identities=11% Similarity=0.019 Sum_probs=355.2
Q ss_pred ccCCCcchhhhhhhhhhhhcccHHHHHHHhhhHhhhcCCHHHHHhhhhcCCCCccccchhh--hhhhhccc---ccccCC
Q 005603 44 SKVDDIQVDEAESTLKEALSLNYEEARALLGRLEYQRGNYDAALQVFQGIDIVSLTPRMTR--AVVERTRP---LRKHRS 118 (688)
Q Consensus 44 ~~~~~g~~~~A~~~l~~~l~~~~~~a~~llg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~ 118 (688)
.|...|+++.|...|++....+. .++..+...+.+.|++++|+.+|+++....+.|.... .+...... +..++
T Consensus 130 ~~~~~g~~~~A~~~f~~m~~~d~-~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~- 207 (857)
T PLN03077 130 MFVRFGELVHAWYVFGKMPERDL-FSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR- 207 (857)
T ss_pred HHHhCCChHHHHHHHhcCCCCCe-eEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH-
Confidence 35678889999999888876542 3455667888999999999999998865455554322 11110000 00000
Q ss_pred CCCCCCCCCCCCCcchhHHH------HHHHHHHHhhhhHHhhCChHHHHHHHHHHHHHHHhcCCCCCCCCCCccccHHHH
Q 005603 119 KGEKADSVPPPGLMSLHSIS------LLLEAILLKAKSLEELGHCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEM 192 (688)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~------~~~e~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 192 (688)
.+|... .-...+...-..|.+.|++++|...|+.+. .|+..
T Consensus 208 --------------~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----------~~d~~--------- 254 (857)
T PLN03077 208 --------------EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----------RRDCI--------- 254 (857)
T ss_pred --------------HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----------CCCcc---------
Confidence 000000 001122334456778899999997776542 12211
Q ss_pred HHHHHHHhHHHHHHcCCHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHhcCccCCCCCccccCCCccCCCchHHHH
Q 005603 193 FHKALELLPHLWIKAGLLEEAIIAYRRALVKPWNLDPKKVASVQRDLAVTLLYGGVEARLPPELKVWGPIAPKDNVEEAI 272 (688)
Q Consensus 193 ~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~eea~ 272 (688)
.+..+-..|.+.|++++|+..|+++......++..++..+...++ ..++.+.+.
T Consensus 255 ---s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~-----------------------~~g~~~~a~ 308 (857)
T PLN03077 255 ---SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACE-----------------------LLGDERLGR 308 (857)
T ss_pred ---hhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH-----------------------hcCChHHHH
Confidence 122233568899999999999999998866666666654443322 234455555
Q ss_pred HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhH
Q 005603 273 LLLLILMEKVASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQ 352 (688)
Q Consensus 273 ~~l~~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 352 (688)
.++ ........+.|..++..+...|.+.|++++|.+.|+++.. .+...|..+...|.+.|++++|+.+|+++.
T Consensus 309 ~l~----~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~ 381 (857)
T PLN03077 309 EMH----GYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALME 381 (857)
T ss_pred HHH----HHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 554 2233334456788888888888888999989888888643 356778888888888899888988888874
Q ss_pred HHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCH
Q 005603 353 VSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNER-EDPEMMYYLGLEHAVQRNV 431 (688)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~ 431 (688)
. ....|+. ..+..+-..+...|+. ++|.+++..+.+... .+..++..+...|.+.|++
T Consensus 382 ------~-~g~~Pd~---~t~~~ll~a~~~~g~~-----------~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 440 (857)
T PLN03077 382 ------Q-DNVSPDE---ITIASVLSACACLGDL-----------DVGVKLHELAERKGLISYVVVANALIEMYSKCKCI 440 (857)
T ss_pred ------H-hCCCCCc---eeHHHHHHHHhccchH-----------HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCH
Confidence 1 1222333 3444444566777777 888888888776543 3455667778888888888
Q ss_pred HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005603 432 EAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRI 511 (688)
Q Consensus 432 ~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 511 (688)
++|.+.|++..+ .+. ..|..+...+...|++++|+.+|+++....+ .+...+..+...+...|..+.+.+.+..
T Consensus 441 ~~A~~vf~~m~~---~d~-vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~--pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 441 DKALEVFHNIPE---KDV-ISWTSIIAGLRLNNRCFEALIFFRQMLLTLK--PNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred HHHHHHHHhCCC---CCe-eeHHHHHHHHHHCCCHHHHHHHHHHHHhCCC--CCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 888888876543 234 6777777888888888888888888765322 3444444444444555555555555444
Q ss_pred HHHHHHhhHHh--------hhhcc--ccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc--CCCCh
Q 005603 512 LLAMIQAQREL--------HSKNF--HKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSI--EFYSP 579 (688)
Q Consensus 512 al~~~~~~~~~--------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~ 579 (688)
+++..-..... +...+ ..+...+.+. ..+..+|..+...|...|+.++|+..|++..+. .|+ .
T Consensus 515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~ 589 (857)
T PLN03077 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-E 589 (857)
T ss_pred HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-c
Confidence 44321100000 00000 0011111111 226788999999999999999999999998874 344 4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005603 580 GSWHTTGMLFEAQSQYKEALVSFSISLAIEP--DYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGL 657 (688)
Q Consensus 580 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 657 (688)
.++..+-..+...|++++|..+|+...+..+ .+...|..+..++.+.|+.+ +|.+.+++. ...|+ +.+|..|-.
T Consensus 590 ~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~--eA~~~~~~m-~~~pd-~~~~~aLl~ 665 (857)
T PLN03077 590 VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLT--EAYNFINKM-PITPD-PAVWGALLN 665 (857)
T ss_pred ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHH--HHHHHHHHC-CCCCC-HHHHHHHHH
Confidence 5566777788999999999999999884322 24578899999999999998 999998875 34554 678888888
Q ss_pred HHHHcCCHHHHHHHHHHHHcccCCCCC
Q 005603 658 ISKMEGSLQQAADYFQAAYELKLSAPV 684 (688)
Q Consensus 658 ~~~~~g~~~~A~~~~~~al~l~p~~~~ 684 (688)
.+...|+.+.+....+++++++|+++.
T Consensus 666 ac~~~~~~e~~e~~a~~l~~l~p~~~~ 692 (857)
T PLN03077 666 ACRIHRHVELGELAAQHIFELDPNSVG 692 (857)
T ss_pred HHHHcCChHHHHHHHHHHHhhCCCCcc
Confidence 888999999999999999999998764
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.94 E-value=5.7e-22 Score=217.57 Aligned_cols=452 Identities=11% Similarity=-0.076 Sum_probs=330.8
Q ss_pred HHHHHHhhhhHHhhCChHHHHHHHHHHHHHHHhcCCCCCCCCCCccccHHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHh
Q 005603 141 LEAILLKAKSLEELGHCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKALELLPHLWIKAGLLEEAIIAYRRA 220 (688)
Q Consensus 141 ~e~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 220 (688)
+...|..+...++.|++++|+..|++++.. .|.+- .++.-+..++...|+.++|+..++++
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~--------~P~~~-----------~av~dll~l~~~~G~~~~A~~~~eka 94 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKA--------GPLQS-----------GQVDDWLQIAGWAGRDQEVIDVYERY 94 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhh--------Cccch-----------hhHHHHHHHHHHcCCcHHHHHHHHHh
Confidence 346788899999999999999999999875 22210 01113445666779999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHHHHHHhcCccCCCCCccccCCCccCCCchHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHH
Q 005603 221 LVKPWNLDPKKVASVQRDLAVTLLYGGVEARLPPELKVWGPIAPKDNVEEAILLLLILMEKVASKEMEWDAEIMDHLTYA 300 (688)
Q Consensus 221 l~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~eea~~~l~~~~~~~~l~~~p~~~~~~~~l~~~ 300 (688)
+.. .+...... ..+|. .|...+++++|+.++ +.+++..|.++.++..++..
T Consensus 95 ~~p-~n~~~~~l----lalA~-------------------ly~~~gdyd~Aiely-----~kaL~~dP~n~~~l~gLa~~ 145 (822)
T PRK14574 95 QSS-MNISSRGL----ASAAR-------------------AYRNEKRWDQALALW-----QSSLKKDPTNPDLISGMIMT 145 (822)
T ss_pred ccC-CCCCHHHH----HHHHH-------------------HHHHcCCHHHHHHHH-----HHHHhhCCCCHHHHHHHHHH
Confidence 822 11111111 11111 234457788888876 66788889998888888888
Q ss_pred HHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHH
Q 005603 301 LSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICY 380 (688)
Q Consensus 301 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~ 380 (688)
+...++.++|+..++++.+.+|..... ..++.++...++..+|+..+++++ ...|+. ..++..+..++
T Consensus 146 y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll---------~~~P~n--~e~~~~~~~~l 213 (822)
T PRK14574 146 QADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAV---------RLAPTS--EEVLKNHLEIL 213 (822)
T ss_pred HhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHH---------HhCCCC--HHHHHHHHHHH
Confidence 899999999999999998888875554 555666666777777999999887 344544 56677777777
Q ss_pred HhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHH--HHHHHHHH---------cC---CHHHHHHHHHHHHhhcC
Q 005603 381 GNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMY--YLGLEHAV---------QR---NVEAAFDYAIMYSDTVA 446 (688)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--~la~~~~~---------~g---~~~~A~~~~~~~l~~~p 446 (688)
...|-. ..|.+..++--..-......++ ..+....+ .. -.+.|+..+++++...+
T Consensus 214 ~~~~~~-----------~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~ 282 (822)
T PRK14574 214 QRNRIV-----------EPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWG 282 (822)
T ss_pred HHcCCc-----------HHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhcc
Confidence 777777 6676655542211111111111 11111111 11 23557777777777443
Q ss_pred CCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhH
Q 005603 447 GNS------GRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQR 520 (688)
Q Consensus 447 ~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 520 (688)
..+ ..+..-.-.++...|++.+++..|+.+...... --..+....|..|...+++++|..+|++++...|..
T Consensus 283 ~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~-~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~- 360 (822)
T PRK14574 283 KDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYK-MPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKT- 360 (822)
T ss_pred CCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCC-CCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccc-
Confidence 332 123334556778899999999999998755521 345688889999999999999999999998864321
Q ss_pred HhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC---------------CChhHHHHH
Q 005603 521 ELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEF---------------YSPGSWHTT 585 (688)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~~~~~l 585 (688)
...+.+......|...|...+++++|..++++.....| +-......+
T Consensus 361 ------------------~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~ 422 (822)
T PRK14574 361 ------------------FRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLL 422 (822)
T ss_pred ------------------cCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHH
Confidence 11222444457888999999999999999999988555 123456778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 005603 586 GMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSL 665 (688)
Q Consensus 586 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 665 (688)
+.++...|++.+|++.+++.+...|.+...+..+|.++...|.+. +|...++.+..++|++..+...+|.++..+|++
T Consensus 423 a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~--~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~ 500 (822)
T PRK14574 423 VQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPR--KAEQELKAVESLAPRSLILERAQAETAMALQEW 500 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhH
Confidence 899999999999999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcccCCCCCC
Q 005603 666 QQAADYFQAAYELKLSAPVQ 685 (688)
Q Consensus 666 ~~A~~~~~~al~l~p~~~~~ 685 (688)
.+|......+++..|+++..
T Consensus 501 ~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 501 HQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHHHHHHHhhCCCchhH
Confidence 99999999999999998753
No 31
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.6e-23 Score=203.36 Aligned_cols=442 Identities=15% Similarity=0.057 Sum_probs=330.6
Q ss_pred HHHHhhhhHHhhCChHHHHHHHHHHHHHHHhcCCCCCCCCCCccccHHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHhhC
Q 005603 143 AILLKAKSLEELGHCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKALELLPHLWIKAGLLEEAIIAYRRALV 222 (688)
Q Consensus 143 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~ 222 (688)
-+|..|+|++-.|+|..|......... ...-..+..+.+.++.+...+++|.....+. .
T Consensus 51 d~~~~aq~l~~~~~y~ra~~lit~~~l--------------------e~~d~~cryL~~~~l~~lk~~~~al~vl~~~-~ 109 (611)
T KOG1173|consen 51 DIYWLAQVLYLGRQYERAAHLITTYKL--------------------EKRDIACRYLAAKCLVKLKEWDQALLVLGRG-H 109 (611)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhh--------------------hhhhHHHHHHHHHHHHHHHHHHHHHHHhccc-c
Confidence 356789999999999999866554421 1223456677888898999999998887765 1
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCccCCCCCccccCCCccCCCchHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 005603 223 KPWNLDPKKVASVQRDLAVTLLYGGVEARLPPELKVWGPIAPKDNVEEAILLLLILMEKVASKEMEWDAEIMDHLTYALS 302 (688)
Q Consensus 223 ~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~eea~~~l~~~~~~~~l~~~p~~~~~~~~l~~~~~ 302 (688)
...+ +-.+ +... . .+....++..+ .. ...-...++++.|.+|.
T Consensus 110 ~~~~--~f~y------------y~~~------~---~~~l~~n~~~~----~~----------~~~~essic~lRgk~y~ 152 (611)
T KOG1173|consen 110 VETN--PFSY------------YEKD------A---ANTLELNSAGE----DL----------MINLESSICYLRGKVYV 152 (611)
T ss_pred hhhc--chhh------------cchh------h---hceeccCcccc----cc----------cccchhceeeeeeehhh
Confidence 1000 0000 0000 0 00000000000 00 00112345667778888
Q ss_pred hcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcC-----------------CcHHHHHHHHHhHHHH----HhHhhh
Q 005603 303 VTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAG-----------------QNEAALNLLKKDQVSR----GVIQST 361 (688)
Q Consensus 303 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-----------------~~~~A~~~~~~~l~~~----~~~~~~ 361 (688)
...+.++|...|.+++..++...++...+-...+-.- ...+-++.+-++...+ ..+...
T Consensus 153 al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~ 232 (611)
T KOG1173|consen 153 ALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRN 232 (611)
T ss_pred hhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccC
Confidence 8888888888888888888877766655544333221 1111111111110000 000000
Q ss_pred cc---cchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005603 362 TS---QKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYA 438 (688)
Q Consensus 362 ~~---~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 438 (688)
+. .......+.....+..+....++ .+..++.+..++.+|-++..+-....++...|+..+-...-
T Consensus 233 ~~~sl~~l~~~~dll~~~ad~~y~~c~f-----------~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~ls 301 (611)
T KOG1173|consen 233 EDESLIGLAENLDLLAEKADRLYYGCRF-----------KECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLS 301 (611)
T ss_pred chhhhhhhhhcHHHHHHHHHHHHHcChH-----------HHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHH
Confidence 00 00001135556666777777787 99999999999999988777655444999999999988888
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q 005603 439 IMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQA 518 (688)
Q Consensus 439 ~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 518 (688)
.+.++..|..+ ..|+..|..|...|++.+|..+|.++..++| ..+.+|...|..+...|..++|+..|..+-++.|.
T Consensus 302 h~LV~~yP~~a-~sW~aVg~YYl~i~k~seARry~SKat~lD~--~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G 378 (611)
T KOG1173|consen 302 HKLVDLYPSKA-LSWFAVGCYYLMIGKYSEARRYFSKATTLDP--TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG 378 (611)
T ss_pred HHHHHhCCCCC-cchhhHHHHHHHhcCcHHHHHHHHHHhhcCc--cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC
Confidence 99999999999 9999999999999999999999999999999 88999999999999999999999999999999776
Q ss_pred hHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHH
Q 005603 519 QRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEA 598 (688)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 598 (688)
.......+|.-|...++++-|.++|.+|+.+.|.+|-+++.+|.+.+..+.|.+|
T Consensus 379 -------------------------~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A 433 (611)
T KOG1173|consen 379 -------------------------CHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEA 433 (611)
T ss_pred -------------------------CcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHH
Confidence 3455677899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC-------CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005603 599 LVSFSISLAIE-------PDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADY 671 (688)
Q Consensus 599 ~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 671 (688)
..+|+.++..- +...+.+.++|.++.++++++ +|+.+|++++.+.|.++.++..+|.+|..+|+++.|+++
T Consensus 434 ~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~--eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~ 511 (611)
T KOG1173|consen 434 LKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE--EAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDH 511 (611)
T ss_pred HHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH--HHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHH
Confidence 99999998431 224567999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHcccCCCC
Q 005603 672 FQAAYELKLSAP 683 (688)
Q Consensus 672 ~~~al~l~p~~~ 683 (688)
|.+++.++|++.
T Consensus 512 fhKaL~l~p~n~ 523 (611)
T KOG1173|consen 512 FHKALALKPDNI 523 (611)
T ss_pred HHHHHhcCCccH
Confidence 999999999874
No 32
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.93 E-value=1.7e-22 Score=226.26 Aligned_cols=456 Identities=12% Similarity=0.027 Sum_probs=349.2
Q ss_pred cCCCcchhhhhhhhhhhhccc---H-HHHHHHhhhHhhhcCCHHHHHhhhhcCCCCccccchhhhhhhhcccccccCCCC
Q 005603 45 KVDDIQVDEAESTLKEALSLN---Y-EEARALLGRLEYQRGNYDAALQVFQGIDIVSLTPRMTRAVVERTRPLRKHRSKG 120 (688)
Q Consensus 45 ~~~~g~~~~A~~~l~~~l~~~---~-~~a~~llg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (688)
+...|++++|...|+...... | ..++..+-..+...++++.|.+++..+....+.|
T Consensus 97 l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-------------------- 156 (697)
T PLN03081 97 LVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-------------------- 156 (697)
T ss_pred HHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc--------------------
Confidence 455778888887777665421 2 3344455566777788888888877665222211
Q ss_pred CCCCCCCCCCCcchhHHHHHHHHHHHhhhhHHhhCChHHHHHHHHHHHHHHHhcCCCCCCCCCCccccHHHHHHHHHHHh
Q 005603 121 EKADSVPPPGLMSLHSISLLLEAILLKAKSLEELGHCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKALELL 200 (688)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l 200 (688)
+ ..++.....+|.+.|++++|...|+.+.+ |+.. .+..+
T Consensus 157 --------~-----------~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----------~~~~------------t~n~l 195 (697)
T PLN03081 157 --------D-----------QYMMNRVLLMHVKCGMLIDARRLFDEMPE----------RNLA------------SWGTI 195 (697)
T ss_pred --------c-----------hHHHHHHHHHHhcCCCHHHHHHHHhcCCC----------CCee------------eHHHH
Confidence 1 11223345677889999999987765421 2211 22334
Q ss_pred HHHHHHcCCHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHhcCccCCCCCccccCCCccCCCchHHHHHHHHHHHH
Q 005603 201 PHLWIKAGLLEEAIIAYRRALVKPWNLDPKKVASVQRDLAVTLLYGGVEARLPPELKVWGPIAPKDNVEEAILLLLILME 280 (688)
Q Consensus 201 ~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~eea~~~l~~~~~ 280 (688)
...|.+.|++++|+..|++++.....++..++..+...++ ..+..+++..+..
T Consensus 196 i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~-----------------------~~~~~~~~~~l~~---- 248 (697)
T PLN03081 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASA-----------------------GLGSARAGQQLHC---- 248 (697)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHh-----------------------cCCcHHHHHHHHH----
Confidence 4667899999999999999998866666655543333221 2234455544431
Q ss_pred HHHhhhcCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhh
Q 005603 281 KVASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQS 360 (688)
Q Consensus 281 ~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 360 (688)
.........|..++..+...|.+.|++++|...|++.. +.+...|..+...|.+.|++++|+.+|+++. .
T Consensus 249 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~------~- 318 (697)
T PLN03081 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMR------D- 318 (697)
T ss_pred HHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHH------H-
Confidence 12222334577889999999999999999999999874 3578899999999999999999999999985 1
Q ss_pred hcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005603 361 TTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNE-REDPEMMYYLGLEHAVQRNVEAAFDYAI 439 (688)
Q Consensus 361 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~ 439 (688)
....|+ ..++..+..++...|.. ++|.+.+..+++.. +.+..++..+...|.+.|++++|...|+
T Consensus 319 ~g~~pd---~~t~~~ll~a~~~~g~~-----------~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~ 384 (697)
T PLN03081 319 SGVSID---QFTFSIMIRIFSRLALL-----------EHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD 384 (697)
T ss_pred cCCCCC---HHHHHHHHHHHHhccch-----------HHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHH
Confidence 122333 36788888999999999 99999999999776 5677788999999999999999999999
Q ss_pred HHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Q 005603 440 MYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQ 519 (688)
Q Consensus 440 ~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 519 (688)
++.+ | +. .+|..+...|...|+.++|+++|++....... .+...+..+...+...|..++|.++|+.+.+..+-
T Consensus 385 ~m~~--~-d~-~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~-Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~- 458 (697)
T PLN03081 385 RMPR--K-NL-ISWNALIAGYGNHGRGTKAVEMFERMIAEGVA-PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI- 458 (697)
T ss_pred hCCC--C-Ce-eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC-
Confidence 8754 3 44 88999999999999999999999998876543 35677888889999999999999999998764211
Q ss_pred HHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHH
Q 005603 520 RELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEAL 599 (688)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 599 (688)
.| +...|..+..+|.+.|++++|.+.+++. ...| +..+|..+...+...|+++.|.
T Consensus 459 ---------------------~p-~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~ 514 (697)
T PLN03081 459 ---------------------KP-RAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGR 514 (697)
T ss_pred ---------------------CC-CccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHH
Confidence 11 4678899999999999999999998874 2333 4667999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 005603 600 VSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRL 644 (688)
Q Consensus 600 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~ 644 (688)
..+++.+++.|++...|..++.+|.+.|+++ +|.+.++...+.
T Consensus 515 ~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~--~A~~v~~~m~~~ 557 (697)
T PLN03081 515 LAAEKLYGMGPEKLNNYVVLLNLYNSSGRQA--EAAKVVETLKRK 557 (697)
T ss_pred HHHHHHhCCCCCCCcchHHHHHHHHhCCCHH--HHHHHHHHHHHc
Confidence 9999999999999999999999999999999 999999988764
No 33
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=5.1e-23 Score=215.68 Aligned_cols=303 Identities=15% Similarity=0.067 Sum_probs=261.4
Q ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHH
Q 005603 324 RAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALES 403 (688)
Q Consensus 324 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~ 403 (688)
.....+..|..+...|++++|+..|++++ ..+|+. ..++..+|.++...|++ ++|+..
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al---------~~~p~~--~~~~~~la~~~~~~g~~-----------~~A~~~ 91 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEML---------KVDPET--VELHLALGNLFRRRGEV-----------DRAIRI 91 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHH---------hcCccc--HHHHHHHHHHHHHcCcH-----------HHHHHH
Confidence 34566778999999999999999999997 334444 67899999999999999 999999
Q ss_pred HHHHHHcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 005603 404 LNCAFLNERED----PEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDE 479 (688)
Q Consensus 404 ~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 479 (688)
+++++...+.. ..++..+|.++...|++++|+..|+++++..|.+. .++..++.++...|++++|++.+++++..
T Consensus 92 ~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 170 (389)
T PRK11788 92 HQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAE-GALQQLLEIYQQEKDWQKAIDVAERLEKL 170 (389)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchH-HHHHHHHHHHHHhchHHHHHHHHHHHHHh
Confidence 99998754332 35688899999999999999999999999988887 99999999999999999999999999988
Q ss_pred cCCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHH
Q 005603 480 AGSMDQ---LELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYM 556 (688)
Q Consensus 480 ~p~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 556 (688)
.|.... ...+..+|.++...|++++|+..|+++++..|+ ...++..+|.++.
T Consensus 171 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------------------------~~~~~~~la~~~~ 225 (389)
T PRK11788 171 GGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQ-------------------------CVRASILLGDLAL 225 (389)
T ss_pred cCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-------------------------CHHHHHHHHHHHH
Confidence 773221 335668899999999999999999999998665 5788999999999
Q ss_pred HcCChhHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHH
Q 005603 557 KLGSLPDAEICTEKAKSIEFYS-PGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIAR 635 (688)
Q Consensus 557 ~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~ 635 (688)
..|++++|+..+++++..+|.+ ..++..++.++...|++++|+..++++++..|+... +..++.++.+.|+++ +|+
T Consensus 226 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~--~A~ 302 (389)
T PRK11788 226 AQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPE--AAQ 302 (389)
T ss_pred HCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHH--HHH
Confidence 9999999999999999998876 467889999999999999999999999999998754 489999999999998 999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHc
Q 005603 636 SFLMNALRLEPTNHDAWMNLGLISKM--EGSLQQAADYFQAAYE 677 (688)
Q Consensus 636 ~~~~~al~~~p~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~ 677 (688)
..++++++..|++......++..... .|+..+|+..+++.++
T Consensus 303 ~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 303 ALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 99999999999987655455444422 5688888888887764
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.93 E-value=7.1e-22 Score=205.26 Aligned_cols=561 Identities=16% Similarity=0.114 Sum_probs=289.1
Q ss_pred ccCCCcchhhhhhhhhhhhcccH--HHHHHHhhhHhhhcCCHHHHHhhhhcCCCCccccchhhhhhhhcccccccCCCCC
Q 005603 44 SKVDDIQVDEAESTLKEALSLNY--EEARALLGRLEYQRGNYDAALQVFQGIDIVSLTPRMTRAVVERTRPLRKHRSKGE 121 (688)
Q Consensus 44 ~~~~~g~~~~A~~~l~~~l~~~~--~~a~~llg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (688)
..+-.|++++|+..+.|++..+| ..|++.||.||-++|+.++|+..+=-|- .+.|+..+
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA--HL~p~d~e----------------- 208 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA--HLNPKDYE----------------- 208 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHH--hcCCCChH-----------------
Confidence 34567999999999999999987 5789999999999999999998875443 33333322
Q ss_pred CCCCCCCCCCcchhHHHHHHHHHHHhhhhHHhhCChHHHHHHHHHHHHHHHhcCCCCCCCCCCccccHHHHHHHHHHHhH
Q 005603 122 KADSVPPPGLMSLHSISLLLEAILLKAKSLEELGHCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKALELLP 201 (688)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~ 201 (688)
-+...+....++|++.+|+-.|.+++.. .|+++ ..+..-.
T Consensus 209 ---------------------~W~~ladls~~~~~i~qA~~cy~rAI~~--------~p~n~-----------~~~~ers 248 (895)
T KOG2076|consen 209 ---------------------LWKRLADLSEQLGNINQARYCYSRAIQA--------NPSNW-----------ELIYERS 248 (895)
T ss_pred ---------------------HHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCcch-----------HHHHHHH
Confidence 2334455555666666666666666553 23221 1112223
Q ss_pred HHHHHcCCHHHHHHHHHHhhCCCCCCChhhHHHHH------------HHHHHHHHhcCc-----cCCCCCccccCCCccC
Q 005603 202 HLWIKAGLLEEAIIAYRRALVKPWNLDPKKVASVQ------------RDLAVTLLYGGV-----EARLPPELKVWGPIAP 264 (688)
Q Consensus 202 ~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~~~------------~~~a~~ll~~~~-----~~~~~~~~~~~~~~~~ 264 (688)
.+|.+.|+...|+..|.++++..|+.+-.-..... ...|.-.+.+-. ..+.|....+...|..
T Consensus 249 ~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~ 328 (895)
T KOG2076|consen 249 SLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLK 328 (895)
T ss_pred HHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence 45666666666666666666654321111110000 001111111100 0011111112222333
Q ss_pred CCchHHHHHHHHHHHH--------H---------------HHhhhcCCcHHH-HHHHHHHHHhcCCHHHHHHHHHHhcCC
Q 005603 265 KDNVEEAILLLLILME--------K---------------VASKEMEWDAEI-MDHLTYALSVTGQFELLAEYVEQALPG 320 (688)
Q Consensus 265 ~~~~eea~~~l~~~~~--------~---------------~~l~~~p~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~l~~ 320 (688)
...++.++..+..... + .+-...+.+..+ ...++.+..+.++..+++..+...-..
T Consensus 329 ~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~ 408 (895)
T KOG2076|consen 329 NKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV 408 (895)
T ss_pred hHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC
Confidence 3333333222111000 0 000000011122 333344444444444444444332221
Q ss_pred CC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHH
Q 005603 321 IY-NRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKE 399 (688)
Q Consensus 321 ~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~ 399 (688)
.| ++++.++.++..+...|++.+|+.+|..++ . . +......+|+.+|.||..++.+ ++
T Consensus 409 ~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~------~---~-~~~~~~~vw~~~a~c~~~l~e~-----------e~ 467 (895)
T KOG2076|consen 409 WVSDDVDLYLDLADALTNIGKYKEALRLLSPIT------N---R-EGYQNAFVWYKLARCYMELGEY-----------EE 467 (895)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHh------c---C-ccccchhhhHHHHHHHHHHhhH-----------HH
Confidence 12 234555566666666666666666666554 1 1 1111145566666666666666 66
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCc--------HHHHHHHHHHHHHcCCHHHHHH
Q 005603 400 ALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNS--------GRGWKLLALILSADQRLKDAQS 471 (688)
Q Consensus 400 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~--------~~~~~~la~~~~~~~~~~~A~~ 471 (688)
|+.+|++++...|.+.++...|+.++.++|+.++|.+.+.+....++.+. .........++...|+.++=+.
T Consensus 468 A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 468 AIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 66666666666666666666666666666666666665555442221110 0222333344444444433222
Q ss_pred HHHHHHhhc----------------------------------------CCC------------------------CcHH
Q 005603 472 IVDFSLDEA----------------------------------------GSM------------------------DQLE 487 (688)
Q Consensus 472 ~~~~al~~~----------------------------------------p~~------------------------~~~~ 487 (688)
.....+... ..+ +-..
T Consensus 548 t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfe 627 (895)
T KOG2076|consen 548 TASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFE 627 (895)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHH
Confidence 111111000 000 0012
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhh-----hhcc----------cccccccccccc-----CCcchHHH
Q 005603 488 LLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELH-----SKNF----------HKTKYITSEAPS-----VKNLEIAT 547 (688)
Q Consensus 488 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~----------~~~~~~~~~~~~-----~~~~~~~~ 547 (688)
++..+...+...+++++|......++...--..+.. ...+ ..+...+...+. ..+.....
T Consensus 628 l~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l 707 (895)
T KOG2076|consen 628 LFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNL 707 (895)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 233444455555555555555555544321111000 0000 000011111111 13334555
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 005603 548 WQDLATIYMKLGSLPDAEICTEKAKSIEFYS-PGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKL 626 (688)
Q Consensus 548 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 626 (688)
|...-......++-.-=...+..++...|++ +......|..+...+.+.-|+..|.++...+|++|..-..+|.++..+
T Consensus 708 ~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~ 787 (895)
T KOG2076|consen 708 WNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHL 787 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 5544444444454444444555566666666 555666788888999999999999999999999998777777665443
Q ss_pred --CCCC------hHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccCCCCC
Q 005603 627 --GRQS------MPIARSFLMNALRLEPT--NHDAWMNLGLISKMEGSLQQAADYFQAAYELKLSAPV 684 (688)
Q Consensus 627 --g~~~------~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 684 (688)
++.- .-+++.++.+..++... ..++.|++|.+|...|=..-|+.+|++++.+.|-+..
T Consensus 788 a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~ 855 (895)
T KOG2076|consen 788 ALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVT 855 (895)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccc
Confidence 2221 23677777777666544 6789999999999999999999999999999876543
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.92 E-value=4.6e-21 Score=191.52 Aligned_cols=368 Identities=15% Similarity=0.069 Sum_probs=307.8
Q ss_pred HHhhhcCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhH---------
Q 005603 282 VASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQ--------- 352 (688)
Q Consensus 282 ~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l--------- 352 (688)
...+-.|...+.|..++ +..-|+.|...+.++-+.-|.++++|..-+..-...|+.+.-.+++.+.+
T Consensus 401 rAveccp~s~dLwlAla----rLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~ 476 (913)
T KOG0495|consen 401 RAVECCPQSMDLWLALA----RLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVE 476 (913)
T ss_pred HHHHhccchHHHHHHHH----HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhccee
Confidence 34456677776665544 55678889999999988889999999999999899998888888888877
Q ss_pred -----HHHHhHhhhcccc-hhhHHHHHHHHHHHHHhhhhhccc-----hHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHH
Q 005603 353 -----VSRGVIQSTTSQK-EHFLAEAYKFLGICYGNVARKSIS-----DTERVFFQKEALESLNCAFLNEREDPEMMYYL 421 (688)
Q Consensus 353 -----~~~~~~~~~~~~~-~~~~~~~~~~lg~~~~~~~~~~~~-----~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 421 (688)
+..++........ ..-.+.++..+|.......+.... ..++...++-|+..|..+++..|....+|...
T Consensus 477 i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra 556 (913)
T KOG0495|consen 477 INRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRA 556 (913)
T ss_pred ecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHH
Confidence 2222222111110 000112222222222111111110 22334455889999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCC
Q 005603 422 GLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQ 501 (688)
Q Consensus 422 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~ 501 (688)
+..--.-|..+.-...+++++...|... ..|...+..+...|+...|..++.++++.+| ++.++|.....+.....+
T Consensus 557 ~~~ek~hgt~Esl~Allqkav~~~pkae-~lwlM~ake~w~agdv~~ar~il~~af~~~p--nseeiwlaavKle~en~e 633 (913)
T KOG0495|consen 557 AMFEKSHGTRESLEALLQKAVEQCPKAE-ILWLMYAKEKWKAGDVPAARVILDQAFEANP--NSEEIWLAAVKLEFENDE 633 (913)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHhCCcch-hHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC--CcHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999998 9999999999999999999999999999999 789999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhH
Q 005603 502 PKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGS 581 (688)
Q Consensus 502 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 581 (688)
++.|...|.++....|. ..+|+.-+.+...+++.++|+.+++++++..|+....
T Consensus 634 ~eraR~llakar~~sgT--------------------------eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl 687 (913)
T KOG0495|consen 634 LERARDLLAKARSISGT--------------------------ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKL 687 (913)
T ss_pred HHHHHHHHHHHhccCCc--------------------------chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHH
Confidence 99999999999886553 8899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005603 582 WHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKM 661 (688)
Q Consensus 582 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 661 (688)
|..+|.++..+++.+.|...|...++..|..++.|..++.+-.+.|+.. .|+..++++.-.+|+++..|.....+-.+
T Consensus 688 ~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~--rAR~ildrarlkNPk~~~lwle~Ir~ElR 765 (913)
T KOG0495|consen 688 WLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLV--RARSILDRARLKNPKNALLWLESIRMELR 765 (913)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchh--hHHHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988 99999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHcccCCCCC
Q 005603 662 EGSLQQAADYFQAAYELKLSAPV 684 (688)
Q Consensus 662 ~g~~~~A~~~~~~al~l~p~~~~ 684 (688)
.|+.+.|.....+|++-.|++..
T Consensus 766 ~gn~~~a~~lmakALQecp~sg~ 788 (913)
T KOG0495|consen 766 AGNKEQAELLMAKALQECPSSGL 788 (913)
T ss_pred cCCHHHHHHHHHHHHHhCCccch
Confidence 99999999999999999998764
No 36
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.92 E-value=1.1e-20 Score=207.59 Aligned_cols=491 Identities=13% Similarity=-0.003 Sum_probs=347.7
Q ss_pred cHHHHHHHhhhHhhhcCCHHHHHhhhhcCCCCccccchhhhhhhhcccccccCCCCCCCCCCCCCCCcchhHHHHHHHHH
Q 005603 65 NYEEARALLGRLEYQRGNYDAALQVFQGIDIVSLTPRMTRAVVERTRPLRKHRSKGEKADSVPPPGLMSLHSISLLLEAI 144 (688)
Q Consensus 65 ~~~~a~~llg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 144 (688)
+..+..+.-+.+.+++|+|+.|+..|+++. ...|...+ .++
T Consensus 32 ~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL--~~~P~~~~----------------------------av~--------- 72 (822)
T PRK14574 32 AMADTQYDSLIIRARAGDTAPVLDYLQEES--KAGPLQSG----------------------------QVD--------- 72 (822)
T ss_pred cchhHHHHHHHHHHhCCCHHHHHHHHHHHH--hhCccchh----------------------------hHH---------
Confidence 345677888899999999999999998887 11111100 011
Q ss_pred HHhhhhHHhhCChHHHHHHHHHHHHHHHhcCCCCCCCCCCccccHHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHhhCCC
Q 005603 145 LLKAKSLEELGHCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKALELLPHLWIKAGLLEEAIIAYRRALVKP 224 (688)
Q Consensus 145 ~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~ 224 (688)
-...++...|++++|+..|++.++ |.+.. ..++..++.++...|++++|+..|+++++..
T Consensus 73 -dll~l~~~~G~~~~A~~~~eka~~----------p~n~~---------~~~llalA~ly~~~gdyd~Aiely~kaL~~d 132 (822)
T PRK14574 73 -DWLQIAGWAGRDQEVIDVYERYQS----------SMNIS---------SRGLASAARAYRNEKRWDQALALWQSSLKKD 132 (822)
T ss_pred -HHHHHHHHcCCcHHHHHHHHHhcc----------CCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 223444566999999998888873 11111 1233344678888899999999999999886
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCccCCCCCccccCCCccCCCchHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 005603 225 WNLDPKKVASVQRDLAVTLLYGGVEARLPPELKVWGPIAPKDNVEEAILLLLILMEKVASKEMEWDAEIMDHLTYALSVT 304 (688)
Q Consensus 225 ~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~eea~~~l~~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 304 (688)
|+. +... ..++. .+...++.++|+..+ +.+....|.+... ..++.++...
T Consensus 133 P~n-~~~l----~gLa~-------------------~y~~~~q~~eAl~~l-----~~l~~~dp~~~~~-l~layL~~~~ 182 (822)
T PRK14574 133 PTN-PDLI----SGMIM-------------------TQADAGRGGVVLKQA-----TELAERDPTVQNY-MTLSYLNRAT 182 (822)
T ss_pred CCC-HHHH----HHHHH-------------------HHhhcCCHHHHHHHH-----HHhcccCcchHHH-HHHHHHHHhc
Confidence 542 1111 11222 133346777887765 4455556654443 4455556557
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhh
Q 005603 305 GQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVA 384 (688)
Q Consensus 305 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~ 384 (688)
++..+|+..+++++...|++.+.+..+..++...|-...|+++.++-- .... +.. ........+.-..+.+
T Consensus 183 ~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p------~~f~--~~~-~~~l~~~~~a~~vr~a 253 (822)
T PRK14574 183 DRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENP------NLVS--AEH-YRQLERDAAAEQVRMA 253 (822)
T ss_pred chHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc------cccC--HHH-HHHHHHHHHHHHHhhc
Confidence 777779999999999999999999999999999999999998877652 1000 111 0111111111111111
Q ss_pred h-hccchHHhhHHHHHHHHHHHHHHHcCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHH
Q 005603 385 R-KSISDTERVFFQKEALESLNCAFLNEREDP-------EMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLL 456 (688)
Q Consensus 385 ~-~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~l 456 (688)
. ...+..++-...+.|+..++..+...+..| .+....-.++...|++.++++.|+.+......-|.-+....
T Consensus 254 ~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 254 VLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 1 111133444556888888998887433322 34455667788999999999999988765533333788889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcCC----CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccc
Q 005603 457 ALILSADQRLKDAQSIVDFSLDEAGS----MDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKY 532 (688)
Q Consensus 457 a~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 532 (688)
|..|...++.++|+.+|++++...+. +........+...+...+++++|..++++.....|-....++.
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~------- 406 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGL------- 406 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCC-------
Confidence 99999999999999999999876531 1334445678889999999999999999998754421000100
Q ss_pred cccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005603 533 ITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDY 612 (688)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 612 (688)
.....+|+.......++.++...|++.+|++.+++.+...|.++.++..+|.++...|.+.+|...++.+..++|++
T Consensus 407 ---~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~ 483 (822)
T PRK14574 407 ---PGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRS 483 (822)
T ss_pred ---CCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCcc
Confidence 01123455678888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 005603 613 IPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQ 666 (688)
Q Consensus 613 ~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 666 (688)
..+...++.++..++++. +|.....++++..|+++.+. .|...+.....++
T Consensus 484 ~~~~~~~~~~al~l~e~~--~A~~~~~~l~~~~Pe~~~~~-~l~r~~~~h~~~~ 534 (822)
T PRK14574 484 LILERAQAETAMALQEWH--QMELLTDDVISRSPEDIPSQ-ELDRQRKVHNMYE 534 (822)
T ss_pred HHHHHHHHHHHHhhhhHH--HHHHHHHHHHhhCCCchhHH-HHHHHHHHhhhHH
Confidence 999999999999999999 99999999999999998543 3334333333333
No 37
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.92 E-value=7.3e-21 Score=213.04 Aligned_cols=458 Identities=13% Similarity=0.018 Sum_probs=360.9
Q ss_pred hhHhhhcCCHHHHHhhhhcCCCCc-cccchhhhhhhhcccccccCCCCCCCCCCCCCCCcchhHHHHHHHHHHHhhhhHH
Q 005603 74 GRLEYQRGNYDAALQVFQGIDIVS-LTPRMTRAVVERTRPLRKHRSKGEKADSVPPPGLMSLHSISLLLEAILLKAKSLE 152 (688)
Q Consensus 74 g~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 152 (688)
-..+.+.|++++|+++|+.+.... +. |+ . .++.....++.
T Consensus 94 i~~l~~~g~~~~Al~~f~~m~~~~~~~----------------------------~~----~-------~t~~~ll~a~~ 134 (697)
T PLN03081 94 IEKLVACGRHREALELFEILEAGCPFT----------------------------LP----A-------STYDALVEACI 134 (697)
T ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCCC----------------------------CC----H-------HHHHHHHHHHH
Confidence 355678999999999998775100 00 11 1 11223344566
Q ss_pred hhCChHHHHHHHHHHHHHHHhcCCCCCCCCCCccccHHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHhhCCCCCCChhhH
Q 005603 153 ELGHCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKALELLPHLWIKAGLLEEAIIAYRRALVKPWNLDPKKV 232 (688)
Q Consensus 153 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~ 232 (688)
+.|+++.|...+..+... |..+ + ...+..+...|.+.|++++|...|+++... +..++
T Consensus 135 ~~~~~~~a~~l~~~m~~~-------g~~~----~-------~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~----~~~t~ 192 (697)
T PLN03081 135 ALKSIRCVKAVYWHVESS-------GFEP----D-------QYMMNRVLLMHVKCGMLIDARRLFDEMPER----NLASW 192 (697)
T ss_pred hCCCHHHHHHHHHHHHHh-------CCCc----c-------hHHHHHHHHHHhcCCCHHHHHHHHhcCCCC----CeeeH
Confidence 778999888777666542 2211 1 012233447899999999999999998643 33333
Q ss_pred HHHHHHHHHHHHhcCccCCCCCccccCCCccCCCchHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhcCCHHHHHH
Q 005603 233 ASVQRDLAVTLLYGGVEARLPPELKVWGPIAPKDNVEEAILLLLILMEKVASKEMEWDAEIMDHLTYALSVTGQFELLAE 312 (688)
Q Consensus 233 ~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~eea~~~l~~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 312 (688)
..+. ..|...+++++|+.++. +........+..++..+..++...|....+..
T Consensus 193 n~li-----------------------~~~~~~g~~~~A~~lf~----~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~ 245 (697)
T PLN03081 193 GTII-----------------------GGLVDAGNYREAFALFR----EMWEDGSDAEPRTFVVMLRASAGLGSARAGQQ 245 (697)
T ss_pred HHHH-----------------------HHHHHCcCHHHHHHHHH----HHHHhCCCCChhhHHHHHHHHhcCCcHHHHHH
Confidence 2221 23556688999998873 33334445677888888899999999999999
Q ss_pred HHHHhcCCC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccchH
Q 005603 313 YVEQALPGI-YNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDT 391 (688)
Q Consensus 313 ~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~ 391 (688)
++..+.+.. ..+...+..+...|.+.|++++|..+|+++. . .. ..+|..+...|...|+.
T Consensus 246 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---------~---~~--~vt~n~li~~y~~~g~~----- 306 (697)
T PLN03081 246 LHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---------E---KT--TVAWNSMLAGYALHGYS----- 306 (697)
T ss_pred HHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---------C---CC--hhHHHHHHHHHHhCCCH-----
Confidence 988776533 3467788899999999999999999999883 1 12 57899999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHcCCHHHH
Q 005603 392 ERVFFQKEALESLNCAFLNE-REDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTV-AGNSGRGWKLLALILSADQRLKDA 469 (688)
Q Consensus 392 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~la~~~~~~~~~~~A 469 (688)
++|+..|+++.... ..+...+..+...+.+.|++++|.+.+..+++.. +.+. .++..+...|.+.|++++|
T Consensus 307 ------~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~-~~~~~Li~~y~k~G~~~~A 379 (697)
T PLN03081 307 ------EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI-VANTALVDLYSKWGRMEDA 379 (697)
T ss_pred ------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCe-eehHHHHHHHHHCCCHHHH
Confidence 99999999997643 3356788899999999999999999999999876 4444 8889999999999999999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHH
Q 005603 470 QSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQ 549 (688)
Q Consensus 470 ~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (688)
..+|++..+ .+...|..+...|.+.|+.++|++.|+++... ...| +..++.
T Consensus 380 ~~vf~~m~~-----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-----------------------g~~P-d~~T~~ 430 (697)
T PLN03081 380 RNVFDRMPR-----KNLISWNALIAGYGNHGRGTKAVEMFERMIAE-----------------------GVAP-NHVTFL 430 (697)
T ss_pred HHHHHhCCC-----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------------CCCC-CHHHHH
Confidence 999998754 25568999999999999999999999998875 1223 577788
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q 005603 550 DLATIYMKLGSLPDAEICTEKAKSIEFY--SPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLG 627 (688)
Q Consensus 550 ~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 627 (688)
.+...+...|..++|..+|+...+..+- +...|..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|
T Consensus 431 ~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g 508 (697)
T PLN03081 431 AVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHK 508 (697)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcC
Confidence 9999999999999999999999864332 3457889999999999999999999875 2334 4567999999999999
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 005603 628 RQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYEL 678 (688)
Q Consensus 628 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 678 (688)
+.+ .|...+++.+++.|++...|..++.+|...|++++|.+.++...+.
T Consensus 509 ~~~--~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 509 NLE--LGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred CcH--HHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 999 9999999999999999999999999999999999999999987754
No 38
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=6e-21 Score=180.96 Aligned_cols=272 Identities=19% Similarity=0.187 Sum_probs=198.0
Q ss_pred HHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCc
Q 005603 370 AEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNS 449 (688)
Q Consensus 370 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 449 (688)
......+|.++...|++ ++|+..|+++..++|......-..|.++...|+++.--......+.......
T Consensus 232 vhLl~~lak~~~~~Gdn-----------~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta 300 (564)
T KOG1174|consen 232 EHLMMALGKCLYYNGDY-----------FQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTA 300 (564)
T ss_pred HHHHHHHhhhhhhhcCc-----------hHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcch
Confidence 35556666666666766 7777777777777777777777777777777777776666666666665555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhcccc
Q 005603 450 GRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHK 529 (688)
Q Consensus 450 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 529 (688)
.-|+.-+..++..+++..|+.+-+++++.+| .+...+..+|.++...|++++|+-.|+.+..+.|.
T Consensus 301 -~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~--r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~----------- 366 (564)
T KOG1174|consen 301 -SHWFVHAQLLYDEKKFERALNFVEKCIDSEP--RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY----------- 366 (564)
T ss_pred -hhhhhhhhhhhhhhhHHHHHHHHHHHhccCc--ccchHHHhccHHHHhccchHHHHHHHHHHHhcchh-----------
Confidence 6677777777777777777777777777777 67777777777777777777777777777777554
Q ss_pred ccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHH-HHHH-HcCCHHHHHHHHHHHHh
Q 005603 530 TKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTG-MLFE-AQSQYKEALVSFSISLA 607 (688)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg-~~~~-~~g~~~~A~~~~~~al~ 607 (688)
..+.|..+..+|...|++.+|...-+.++...|.++.++..+| .++. .-.--++|.+.++++++
T Consensus 367 --------------rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~ 432 (564)
T KOG1174|consen 367 --------------RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK 432 (564)
T ss_pred --------------hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc
Confidence 5777777777777777777777777777777777777777775 3333 22334677777888888
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccCCCC
Q 005603 608 IEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKLSAP 683 (688)
Q Consensus 608 ~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 683 (688)
++|....+-..++.++...|++. +++..+++.+...|+. ..+..||.++...+.+++|+++|..|+.++|++.
T Consensus 433 ~~P~Y~~AV~~~AEL~~~Eg~~~--D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 433 INPIYTPAVNLIAELCQVEGPTK--DIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred cCCccHHHHHHHHHHHHhhCccc--hHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 88887777777788777777777 7888888877777754 4677778888778888888888888888777764
No 39
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.92 E-value=1.2e-21 Score=181.26 Aligned_cols=331 Identities=16% Similarity=0.061 Sum_probs=282.7
Q ss_pred hhcCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhccc
Q 005603 285 KEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQ 364 (688)
Q Consensus 285 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 364 (688)
...|.+..-.+.+|..++..|++.+|+..|..++..+|++..+++..|.+|+.+|+-..|+..+.+++ ...
T Consensus 32 ~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVl---------elK 102 (504)
T KOG0624|consen 32 TASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVL---------ELK 102 (504)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHH---------hcC
Confidence 34456777788999999999999999999999999999999999999999999999999999999997 556
Q ss_pred chhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCH---H------------HHHHHHHHHHHcC
Q 005603 365 KEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDP---E------------MMYYLGLEHAVQR 429 (688)
Q Consensus 365 ~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~------------~~~~la~~~~~~g 429 (688)
|+. ..+....|.++.++|.+ ++|...|...++.+|.+. + .+......+...|
T Consensus 103 pDF--~~ARiQRg~vllK~Gel-----------e~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~G 169 (504)
T KOG0624|consen 103 PDF--MAARIQRGVVLLKQGEL-----------EQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSG 169 (504)
T ss_pred ccH--HHHHHHhchhhhhcccH-----------HHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCC
Confidence 666 67788899999999999 999999999999999652 1 1223344556689
Q ss_pred CHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 005603 430 NVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTY 509 (688)
Q Consensus 430 ~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~ 509 (688)
+...|+.+..+++++.|-+. ..+...+.+|...|+...|+.-++.+-++.. ++.+.++.++.+++..|+.+.++...
T Consensus 170 D~~~ai~~i~~llEi~~Wda-~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~--DnTe~~ykis~L~Y~vgd~~~sL~~i 246 (504)
T KOG0624|consen 170 DCQNAIEMITHLLEIQPWDA-SLRQARAKCYIAEGEPKKAIHDLKQASKLSQ--DNTEGHYKISQLLYTVGDAENSLKEI 246 (504)
T ss_pred chhhHHHHHHHHHhcCcchh-HHHHHHHHHHHhcCcHHHHHHHHHHHHhccc--cchHHHHHHHHHHHhhhhHHHHHHHH
Confidence 99999999999999999998 9999999999999999999999999999998 89999999999999999999999999
Q ss_pred HHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhH----HHHH
Q 005603 510 RILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGS----WHTT 585 (688)
Q Consensus 510 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~----~~~l 585 (688)
+..++++|++...+... .+. ....-...-+.-....++|.+++...++.++.+|..+.+ +..+
T Consensus 247 RECLKldpdHK~Cf~~Y--------Kkl-----kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~ 313 (504)
T KOG0624|consen 247 RECLKLDPDHKLCFPFY--------KKL-----KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVL 313 (504)
T ss_pred HHHHccCcchhhHHHHH--------HHH-----HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeehee
Confidence 99999999865444221 000 001111223445567899999999999999999985443 4556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 005603 586 GMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNL 655 (688)
Q Consensus 586 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~l 655 (688)
..|+...|++.+|+..+.+++.++|+++.++...+.+|.-...|+ .|+..|+++.+.++++..+.-.+
T Consensus 314 c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD--~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 314 CTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYD--DAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred eecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHH--HHHHHHHHHHhcCcccHHHHHHH
Confidence 778889999999999999999999999999999999999999998 99999999999999987665443
No 40
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.91 E-value=1.4e-18 Score=196.32 Aligned_cols=430 Identities=12% Similarity=0.009 Sum_probs=255.2
Q ss_pred hHHhhCChHHHHHHHHHHHHHHHhcCCCCCCCCCCccccHHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHhhCCCCCCCh
Q 005603 150 SLEELGHCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKALELLPHLWIKAGLLEEAIIAYRRALVKPWNLDP 229 (688)
Q Consensus 150 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~ 229 (688)
++.+.|++++|...|+.+... |..+ + ...+..+-..|.+.|+.++|...|++|......++.
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~-------Gl~p----D-------~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdv 507 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEA-------GLKA----D-------CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANV 507 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHc-------CCCC----C-------HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCH
Confidence 344667777777666655432 2211 1 011222334566777777777777777766444444
Q ss_pred hhHHHHHHHHHHHHHhcCccCCCCCccccCCCccCCCchHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhcCCHHH
Q 005603 230 KKVASVQRDLAVTLLYGGVEARLPPELKVWGPIAPKDNVEEAILLLLILMEKVASKEMEWDAEIMDHLTYALSVTGQFEL 309 (688)
Q Consensus 230 ~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~eea~~~l~~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~ 309 (688)
.++..+.. .|...+++++|+.++. ++.......|..+|..+...+.+.|++++
T Consensus 508 vTynaLI~-----------------------gy~k~G~~eeAl~lf~----~M~~~Gv~PD~vTYnsLI~a~~k~G~~de 560 (1060)
T PLN03218 508 HTFGALID-----------------------GCARAGQVAKAFGAYG----IMRSKNVKPDRVVFNALISACGQSGAVDR 560 (1060)
T ss_pred HHHHHHHH-----------------------HHHHCcCHHHHHHHHH----HHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 44432222 2445567777777652 22223334566777777788888888888
Q ss_pred HHHHHHHhcC----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhh
Q 005603 310 LAEYVEQALP----GIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVAR 385 (688)
Q Consensus 310 A~~~~~~~l~----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~ 385 (688)
|.++|+++.. ..| +...|..+...|.+.|++++|.++|+++. . ....++ ...|..+...|.+.|+
T Consensus 561 A~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~------e-~gi~p~---~~tynsLI~ay~k~G~ 629 (1060)
T PLN03218 561 AFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIH------E-YNIKGT---PEVYTIAVNSCSQKGD 629 (1060)
T ss_pred HHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHH------H-cCCCCC---hHHHHHHHHHHHhcCC
Confidence 8888877753 233 45677777777888888888888887775 1 111121 3667777777777777
Q ss_pred hccchHHhhHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcC
Q 005603 386 KSISDTERVFFQKEALESLNCAFLNE-REDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQ 464 (688)
Q Consensus 386 ~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~ 464 (688)
. ++|+.+|+++.... ..+...+..+...+.+.|++++|.+.++.+.+.........+..+...|.+.|
T Consensus 630 ~-----------deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G 698 (1060)
T PLN03218 630 W-----------DFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698 (1060)
T ss_pred H-----------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 7 88888887777542 22355677777777788888888888877776543222267777777788888
Q ss_pred CHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcch
Q 005603 465 RLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLE 544 (688)
Q Consensus 465 ~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (688)
++++|..+|+++...... .+...|..+...|.+.|++++|++.|+++... ...| +
T Consensus 699 ~~eeA~~lf~eM~~~g~~-PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-----------------------Gi~P-d 753 (1060)
T PLN03218 699 NWKKALELYEDIKSIKLR-PTVSTMNALITALCEGNQLPKALEVLSEMKRL-----------------------GLCP-N 753 (1060)
T ss_pred CHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----------------------CCCC-C
Confidence 888888888777654322 35667777777788888888888888777553 1122 4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC-ChhHHHHHHHHHH----H-------------------cCCHHHHHH
Q 005603 545 IATWQDLATIYMKLGSLPDAEICTEKAKSIEFY-SPGSWHTTGMLFE----A-------------------QSQYKEALV 600 (688)
Q Consensus 545 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~----~-------------------~g~~~~A~~ 600 (688)
..+|..+...+.+.|++++|..++.++++.... +...+..+-.++. . .+..++|+.
T Consensus 754 ~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~ 833 (1060)
T PLN03218 754 TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALM 833 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHH
Confidence 566666777777788888888888777764321 2222222211111 0 112345666
Q ss_pred HHHHHHhc--CCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Q 005603 601 SFSISLAI--EPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPT--NHDAWMNLGLISKMEGS-LQQAADYFQAA 675 (688)
Q Consensus 601 ~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~-~~~A~~~~~~a 675 (688)
.|++.++. .|+.. .+..+-.++...+... .+...++... ..|. +...+..+-..+ |+ .++|...|+.+
T Consensus 834 lf~eM~~~Gi~Pd~~-T~~~vL~cl~~~~~~~--~~~~m~~~m~-~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em 906 (1060)
T PLN03218 834 VYRETISAGTLPTME-VLSQVLGCLQLPHDAT--LRNRLIENLG-ISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEA 906 (1060)
T ss_pred HHHHHHHCCCCCCHH-HHHHHHHHhcccccHH--HHHHHHHHhc-cCCCCcchhhhHHHHHhh---ccChHHHHHHHHHH
Confidence 66666654 24433 3333334444445444 5555444322 2222 233343333332 33 35788888887
Q ss_pred Hcc
Q 005603 676 YEL 678 (688)
Q Consensus 676 l~l 678 (688)
...
T Consensus 907 ~~~ 909 (1060)
T PLN03218 907 ASL 909 (1060)
T ss_pred HHc
Confidence 763
No 41
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4.3e-21 Score=189.06 Aligned_cols=209 Identities=17% Similarity=0.115 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhcccccc
Q 005603 452 GWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTK 531 (688)
Q Consensus 452 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 531 (688)
....+|.......++..|++.+..+++++. ....+...+-+|+..|.+.+.+.....+++........+..
T Consensus 226 ~ek~lgnaaykkk~f~~a~q~y~~a~el~~---~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~kl------ 296 (539)
T KOG0548|consen 226 KEKELGNAAYKKKDFETAIQHYAKALELAT---DITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKL------ 296 (539)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhHhh---hhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHH------
Confidence 345688888999999999999999999883 67778889999999999999988888877764443222221
Q ss_pred ccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC--------------------------CChhHHHHH
Q 005603 532 YITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEF--------------------------YSPGSWHTT 585 (688)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------------------------~~~~~~~~l 585 (688)
...+...+|..|...++++.|+.+|++++.... .-..--...
T Consensus 297 ------------Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~k 364 (539)
T KOG0548|consen 297 ------------IAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREK 364 (539)
T ss_pred ------------HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHH
Confidence 245556688899999999999999999876432 222224456
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 005603 586 GMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSL 665 (688)
Q Consensus 586 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 665 (688)
|..++..|+|..|+..|.+++..+|+++..|.++|.+|.++|.+. .|+...+.+++++|++..+|..-|.++..+.+|
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~--~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~y 442 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYP--EALKDAKKCIELDPNFIKAYLRKGAALRAMKEY 442 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHH--HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcccCCCC
Q 005603 666 QQAADYFQAAYELKLSAP 683 (688)
Q Consensus 666 ~~A~~~~~~al~l~p~~~ 683 (688)
++|.+.|+++++++|++.
T Consensus 443 dkAleay~eale~dp~~~ 460 (539)
T KOG0548|consen 443 DKALEAYQEALELDPSNA 460 (539)
T ss_pred HHHHHHHHHHHhcCchhH
Confidence 999999999999999864
No 42
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.90 E-value=6.9e-19 Score=198.78 Aligned_cols=398 Identities=13% Similarity=0.030 Sum_probs=312.6
Q ss_pred HHhhCChHHHHHHHHHHHHHHHhcCCCCCCCCCCccccHHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHhhCCCCCCChh
Q 005603 151 LEELGHCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKALELLPHLWIKAGLLEEAIIAYRRALVKPWNLDPK 230 (688)
Q Consensus 151 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~ 230 (688)
+.+.|++++|...|+.+... +..+ .+ .++.. .+-..+.+.|..++|...|+.+.. ++..
T Consensus 380 l~r~G~l~eAl~Lfd~M~~~-------gvv~---~~----~v~~~---~li~~~~~~g~~~eAl~lf~~M~~----pd~~ 438 (1060)
T PLN03218 380 LLRDGRIKDCIDLLEDMEKR-------GLLD---MD----KIYHA---KFFKACKKQRAVKEAFRFAKLIRN----PTLS 438 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHhC-------CCCC---ch----HHHHH---HHHHHHHHCCCHHHHHHHHHHcCC----CCHH
Confidence 44679999998777655431 2111 11 11111 222456788999999999988764 3444
Q ss_pred hHHHHHHHHHHHHHhcCccCCCCCccccCCCccCCCchHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhcCCHHHH
Q 005603 231 KVASVQRDLAVTLLYGGVEARLPPELKVWGPIAPKDNVEEAILLLLILMEKVASKEMEWDAEIMDHLTYALSVTGQFELL 310 (688)
Q Consensus 231 ~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~eea~~~l~~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A 310 (688)
++..+.. .+...+++++|..++ ........+.|..+|..+..+|.+.|++++|
T Consensus 439 Tyn~LL~-----------------------a~~k~g~~e~A~~lf----~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A 491 (1060)
T PLN03218 439 TFNMLMS-----------------------VCASSQDIDGALRVL----RLVQEAGLKADCKLYTTLISTCAKSGKVDAM 491 (1060)
T ss_pred HHHHHHH-----------------------HHHhCcCHHHHHHHH----HHHHHcCCCCCHHHHHHHHHHHHhCcCHHHH
Confidence 4443222 234457888888876 3334444567889999999999999999999
Q ss_pred HHHHHHhcCCCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccc
Q 005603 311 AEYVEQALPGIY-NRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSIS 389 (688)
Q Consensus 311 ~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~ 389 (688)
..+|+++..... .+...|..+...|.+.|++++|+.+|+++. . ....|+ ...|..+...+.+.|+.
T Consensus 492 ~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~------~-~Gv~PD---~vTYnsLI~a~~k~G~~--- 558 (1060)
T PLN03218 492 FEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR------S-KNVKPD---RVVFNALISACGQSGAV--- 558 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH------H-cCCCCC---HHHHHHHHHHHHHCCCH---
Confidence 999999886442 378999999999999999999999999985 1 222333 47889999999999999
Q ss_pred hHHhhHHHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHcCC
Q 005603 390 DTERVFFQKEALESLNCAFLNE---REDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTV-AGNSGRGWKLLALILSADQR 465 (688)
Q Consensus 390 ~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~la~~~~~~~~ 465 (688)
++|.+.|.++.... ..+...+..+...|.+.|++++|.+.|+.+.+.+ +.+. ..|..+...|.+.|+
T Consensus 559 --------deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~-~tynsLI~ay~k~G~ 629 (1060)
T PLN03218 559 --------DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTP-EVYTIAVNSCSQKGD 629 (1060)
T ss_pred --------HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHHhcCC
Confidence 99999999997531 2346788889999999999999999999999876 3445 899999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchH
Q 005603 466 LKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEI 545 (688)
Q Consensus 466 ~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (688)
+++|+.+|+++....-. .+...+..+...+...|++++|.++++.+.+.. .+.+.
T Consensus 630 ~deAl~lf~eM~~~Gv~-PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G------------------------~~pd~ 684 (1060)
T PLN03218 630 WDFALSIYDDMKKKGVK-PDEVFFSALVDVAGHAGDLDKAFEILQDARKQG------------------------IKLGT 684 (1060)
T ss_pred HHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC------------------------CCCCH
Confidence 99999999999876432 356788899999999999999999999988742 12257
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Q 005603 546 ATWQDLATIYMKLGSLPDAEICTEKAKSIE-FYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIE-PDYIPSIISTAEIL 623 (688)
Q Consensus 546 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 623 (688)
.+|..+...|.+.|++++|..+|++..... ..+...|..+...|.+.|++++|++.|++..... ..+...+..+...+
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 899999999999999999999999987642 2356789999999999999999999999887642 23456777788999
Q ss_pred HHhCCCChHHHHHHHHHHHHhC
Q 005603 624 MKLGRQSMPIARSFLMNALRLE 645 (688)
Q Consensus 624 ~~~g~~~~~~A~~~~~~al~~~ 645 (688)
.+.|+.+ +|..++..+++..
T Consensus 765 ~k~G~le--~A~~l~~~M~k~G 784 (1060)
T PLN03218 765 ERKDDAD--VGLDLLSQAKEDG 784 (1060)
T ss_pred HHCCCHH--HHHHHHHHHHHcC
Confidence 9999998 9999999998854
No 43
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.90 E-value=1e-19 Score=182.00 Aligned_cols=314 Identities=16% Similarity=0.087 Sum_probs=157.1
Q ss_pred hhhcCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcc
Q 005603 284 SKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTS 363 (688)
Q Consensus 284 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 363 (688)
+...|..+..|...+.-+...|+...|...+.++...+|++.++|+.-..+.+...+++.|..+|.++- ..
T Consensus 577 v~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar---------~~ 647 (913)
T KOG0495|consen 577 VEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKAR---------SI 647 (913)
T ss_pred HHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHh---------cc
Confidence 344455555555555555555555555555555555555555555555555555555555555555552 11
Q ss_pred cchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005603 364 QKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSD 443 (688)
Q Consensus 364 ~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 443 (688)
.+. .++|+.-+.....++.. ++|+.+++++++..|..+..|..+|.++.+.++.+.|...|...++
T Consensus 648 sgT---eRv~mKs~~~er~ld~~-----------eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k 713 (913)
T KOG0495|consen 648 SGT---ERVWMKSANLERYLDNV-----------EEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK 713 (913)
T ss_pred CCc---chhhHHHhHHHHHhhhH-----------HHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc
Confidence 111 24444444444445554 5555555555555555555555555555555555555555555555
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhh
Q 005603 444 TVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELH 523 (688)
Q Consensus 444 ~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 523 (688)
..|..+ ..|..++.+-...|+...|..+++++.-.+| .+..+|....++-.+.|..+.|.....++++.+|+
T Consensus 714 ~cP~~i-pLWllLakleEk~~~~~rAR~ildrarlkNP--k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~----- 785 (913)
T KOG0495|consen 714 KCPNSI-PLWLLLAKLEEKDGQLVRARSILDRARLKNP--KNALLWLESIRMELRAGNKEQAELLMAKALQECPS----- 785 (913)
T ss_pred cCCCCc-hHHHHHHHHHHHhcchhhHHHHHHHHHhcCC--CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-----
Confidence 555555 5555555555555555555555555555555 44555555555555555555555555555555443
Q ss_pred hhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 005603 524 SKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFS 603 (688)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 603 (688)
....|..-..+.-.-++-..++.. ++....++.++...|.++....++++|.+.|.
T Consensus 786 --------------------sg~LWaEaI~le~~~~rkTks~DA----Lkkce~dphVllaia~lfw~e~k~~kar~Wf~ 841 (913)
T KOG0495|consen 786 --------------------SGLLWAEAIWLEPRPQRKTKSIDA----LKKCEHDPHVLLAIAKLFWSEKKIEKAREWFE 841 (913)
T ss_pred --------------------cchhHHHHHHhccCcccchHHHHH----HHhccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 233343333333333332222222 22233444455555555555555555555555
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHH
Q 005603 604 ISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMN 654 (688)
Q Consensus 604 ~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~ 654 (688)
++++.+|++.++|..+-..+...|.-+ +-.+.+.++....|.+...|..
T Consensus 842 Ravk~d~d~GD~wa~fykfel~hG~ee--d~kev~~~c~~~EP~hG~~W~a 890 (913)
T KOG0495|consen 842 RAVKKDPDNGDAWAWFYKFELRHGTEE--DQKEVLKKCETAEPTHGELWQA 890 (913)
T ss_pred HHHccCCccchHHHHHHHHHHHhCCHH--HHHHHHHHHhccCCCCCcHHHH
Confidence 555555555555555555555555444 4455555555555555444443
No 44
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.90 E-value=3.5e-21 Score=178.23 Aligned_cols=315 Identities=14% Similarity=0.045 Sum_probs=275.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHH
Q 005603 320 GIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKE 399 (688)
Q Consensus 320 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~ 399 (688)
.+|.+.+-.+.+|..++..|++..|+..|..++ ..+|+. -.+++..|.+|...|+. .-
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAv---------e~dp~~--Y~aifrRaT~yLAmGks-----------k~ 90 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAV---------EGDPNN--YQAIFRRATVYLAMGKS-----------KA 90 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---------cCCchh--HHHHHHHHHHHhhhcCC-----------cc
Confidence 456778889999999999999999999999997 666766 68899999999999999 99
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcH--HH------------HHHHHHHHHHcCC
Q 005603 400 ALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSG--RG------------WKLLALILSADQR 465 (688)
Q Consensus 400 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~------------~~~la~~~~~~~~ 465 (688)
|+..+.+++++.|+...+....|.+++++|.+++|..-|+++++.+|.+.. ++ +......++..|+
T Consensus 91 al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD 170 (504)
T KOG0624|consen 91 ALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGD 170 (504)
T ss_pred chhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999999999999999999999999999986531 11 1223344567799
Q ss_pred HHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchH
Q 005603 466 LKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEI 545 (688)
Q Consensus 466 ~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (688)
...|+......+++.| -+..++...+.+|...|++..||.-++.+-++..+ +.
T Consensus 171 ~~~ai~~i~~llEi~~--Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-------------------------nT 223 (504)
T KOG0624|consen 171 CQNAIEMITHLLEIQP--WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-------------------------NT 223 (504)
T ss_pred hhhHHHHHHHHHhcCc--chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-------------------------ch
Confidence 9999999999999999 78999999999999999999999999999888544 68
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHH---H---------HHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 005603 546 ATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWH---T---------TGMLFEAQSQYKEALVSFSISLAIEPDYI 613 (688)
Q Consensus 546 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---~---------lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 613 (688)
+.++.++.++...|+.+.++...+++++++|+....+- . -+.-....++|.+++...++.++.+|..+
T Consensus 224 e~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~ 303 (504)
T KOG0624|consen 224 EGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEET 303 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCccc
Confidence 99999999999999999999999999999998754321 1 12334567899999999999999999855
Q ss_pred HH----HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccCCCCCC
Q 005603 614 PS----IISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKLSAPVQ 685 (688)
Q Consensus 614 ~~----~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 685 (688)
.+ ...+..|+...|++. +|+....+++..+|++..++...+.+|.....|+.|+..|++|.+.+|++..+
T Consensus 304 ~ir~~~~r~~c~C~~~d~~~~--eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 304 MIRYNGFRVLCTCYREDEQFG--EAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred ceeeeeeheeeecccccCCHH--HHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 44 344667777788888 99999999999999999999999999999999999999999999999987543
No 45
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.89 E-value=2.2e-19 Score=183.73 Aligned_cols=550 Identities=20% Similarity=0.134 Sum_probs=336.7
Q ss_pred chhhhhhhhhhhhccc---H---HHHHHHhhhHhhhcCCHHHHHhhhhcCCCCccccchhhhhhhhcccccccCCCCCCC
Q 005603 50 QVDEAESTLKEALSLN---Y---EEARALLGRLEYQRGNYDAALQVFQGIDIVSLTPRMTRAVVERTRPLRKHRSKGEKA 123 (688)
Q Consensus 50 ~~~~A~~~l~~~l~~~---~---~~a~~llg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (688)
..-+|+..+-++|.-. + -++...++...|-.|-+.+|++.|.+..+++....+.|
T Consensus 19 ~~~~A~~~l~~~L~~~~~~~~~~~ea~~~lakl~~a~~~e~~ai~~~~~s~i~~~~~~~~~------------------- 79 (799)
T KOG4162|consen 19 GLSEAIPELHRALHKHNSSKSFVCEAMLILAKLDYACGEERKAIRNFSASGIDNQYSENLP------------------- 79 (799)
T ss_pred chHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhhhcccHHHHHHHHHHHhhcccccccccc-------------------
Confidence 3567888888888642 2 47888899999999999999999988765444333222
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHh--hhhHH-------------hhCChHHHHHHHH----------HHHHHHHh-cCCC
Q 005603 124 DSVPPPGLMSLHSISLLLEAILLK--AKSLE-------------ELGHCKEAAKECK----------IILDIVES-GLPN 177 (688)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~e~~~~~--~~~~~-------------~~g~~~~A~~~~~----------~~l~~~~~-~~~~ 177 (688)
.....++.|++..+ |.|+. +.|+.++|+..|+ .-++++.. ..+-
T Consensus 80 ----------~~~~~~l~Ea~~il~~glsle~ee~~~~s~~~~~qr~~~e~al~vFe~~~i~~~~~~~e~~i~~~s~~s~ 149 (799)
T KOG4162|consen 80 ----------LLDLRLLAEAEAILREGLSLEYEEARALSGRLEYQRGNDEAALRVFEGIDILAITYLQELEIVQNSNSSL 149 (799)
T ss_pred ----------hhhhhhHHHHHHHHhhhcccchhhhhhhhhhHHHhhcCcHHHHHHhcccchhHHHHHHHHHHHhccCccc
Confidence 34455677777777 66664 4577888888775 22222222 2221
Q ss_pred CCC--CCC--Cc---cccHHHHHHHHHHHhH-HHHHHcCCHHHHHHHHHHhhCCC----C-C-CChhhHHHHHHHHHHHH
Q 005603 178 GMP--EGF--GE---DCKLQEMFHKALELLP-HLWIKAGLLEEAIIAYRRALVKP----W-N-LDPKKVASVQRDLAVTL 243 (688)
Q Consensus 178 ~~~--~~~--~~---~~~~~~~~~~a~~~l~-~~~~~~g~~~eA~~~y~~al~~~----~-~-~~~~~~~~~~~~~a~~l 243 (688)
..+ .++ .+ ....+..+...+..++ ....+.|++.+|+..++.+|..- + . .+.. .....+..++
T Consensus 150 ~~~s~~~~a~~p~~~~s~~~~~Le~~l~~lk~k~L~~~~~iqea~e~cr~~L~~ve~~~t~~~~~~~---s~~~~l~~vl 226 (799)
T KOG4162|consen 150 RQRSKASFAIEPSTVMSAHGAILEAELIKLKAKSLKRLGRIQEAAEECRSVLDIVETKATQGSKDTE---SGALKLQEVL 226 (799)
T ss_pred cCCCccccccCCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchH---HHHHHHHHHH
Confidence 111 111 11 1122223333333333 23556679999999999998761 0 1 1111 1122223332
Q ss_pred HhcCcc-------CCCC-------------------C----ccccCCCccCCCchHHHHHHHHHHHHHHHhhh-cCCcHH
Q 005603 244 LYGGVE-------ARLP-------------------P----ELKVWGPIAPKDNVEEAILLLLILMEKVASKE-MEWDAE 292 (688)
Q Consensus 244 l~~~~~-------~~~~-------------------~----~~~~~~~~~~~~~~eea~~~l~~~~~~~~l~~-~p~~~~ 292 (688)
.+.+.. .+.+ . .+.-.+.|.|.++.|+.+++++|. ...+.+ .-.+..
T Consensus 227 ~~~~~~~~~Lw~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~--es~i~Re~~~d~i 304 (799)
T KOG4162|consen 227 SRAVELLPILWKKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIE--ESLIPRENIEDAI 304 (799)
T ss_pred HHHHHHhHHHhcCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHH--hhccccccHHHHH
Confidence 222220 0001 0 012234888999999997776653 211111 112344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHH
Q 005603 293 IMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEA 372 (688)
Q Consensus 293 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 372 (688)
++..+.....+.+.+ .+++.+|-.+...+...|+++.+.+.|++++ +.--. ....
T Consensus 305 lslm~~~~k~r~~~~--------------qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~---------~~~~~--~~e~ 359 (799)
T KOG4162|consen 305 LSLMLLLRKLRLKKF--------------QNDAAIFDHLTFALSRCGQFEVLAEQFEQAL---------PFSFG--EHER 359 (799)
T ss_pred HHHHHHHHHHHHhhh--------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------Hhhhh--hHHH
Confidence 444343333333222 2467788889999999999999999999997 11111 1344
Q ss_pred HHHHHHHHHhhhhhccc--------------------------hHHhhHHHHHHHHHHHHHHHcC-----CCCHHHHHHH
Q 005603 373 YKFLGICYGNVARKSIS--------------------------DTERVFFQKEALESLNCAFLNE-----REDPEMMYYL 421 (688)
Q Consensus 373 ~~~lg~~~~~~~~~~~~--------------------------~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~l 421 (688)
|+.++.++...|..... -.++.+..++++.+-.+++... --.+..+..+
T Consensus 360 w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~l 439 (799)
T KOG4162|consen 360 WYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFL 439 (799)
T ss_pred HHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHH
Confidence 55555555554444000 0011222266666666665421 1124455555
Q ss_pred HHHHHHc-----------CCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHH
Q 005603 422 GLEHAVQ-----------RNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLR 490 (688)
Q Consensus 422 a~~~~~~-----------g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 490 (688)
|.+|-.+ ....++++.++++++.+|.++ .+.+.++.-|..+++.+.|.+..+++++.++. ++...|.
T Consensus 440 Gi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp-~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~-~~~~~wh 517 (799)
T KOG4162|consen 440 GIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP-LVIFYLALQYAEQRQLTSALDYAREALALNRG-DSAKAWH 517 (799)
T ss_pred HHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC-ccHHHHH
Confidence 5555322 123566667777777777777 77777777777777777777777777777553 6677777
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 005603 491 LKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEK 570 (688)
Q Consensus 491 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 570 (688)
.++.++...+++.+|+.....++.-.|++ .........+-...++.++|+..+..
T Consensus 518 LLALvlSa~kr~~~Al~vvd~al~E~~~N-------------------------~~l~~~~~~i~~~~~~~e~~l~t~~~ 572 (799)
T KOG4162|consen 518 LLALVLSAQKRLKEALDVVDAALEEFGDN-------------------------HVLMDGKIHIELTFNDREEALDTCIH 572 (799)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHhhhh-------------------------hhhchhhhhhhhhcccHHHHHHHHHH
Confidence 77777777777777777777777765542 22222222222223333333333222
Q ss_pred HHhcC--------------------------------------------------------C------CC-------hhH
Q 005603 571 AKSIE--------------------------------------------------------F------YS-------PGS 581 (688)
Q Consensus 571 al~~~--------------------------------------------------------p------~~-------~~~ 581 (688)
.+.+- | .. ...
T Consensus 573 ~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~l 652 (799)
T KOG4162|consen 573 KLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKL 652 (799)
T ss_pred HHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHH
Confidence 21110 0 00 123
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005603 582 WHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKM 661 (688)
Q Consensus 582 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 661 (688)
|...+..+...++.++|..++.++-.+.|..+..|+..|.++...|+.. +|.+.|..++.++|+++.+...+|.++..
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~--EA~~af~~Al~ldP~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLE--EAKEAFLVALALDPDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhH--HHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 6677888888999999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred cCCHHHHHH--HHHHHHcccCCCCCCCC
Q 005603 662 EGSLQQAAD--YFQAAYELKLSAPVQSF 687 (688)
Q Consensus 662 ~g~~~~A~~--~~~~al~l~p~~~~~~f 687 (688)
.|+..-|.. .+..+++++|.+|.+.|
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~n~eaW~ 758 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPLNHEAWY 758 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCCCHHHHH
Confidence 998887777 99999999999987654
No 46
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.89 E-value=2.9e-20 Score=193.40 Aligned_cols=361 Identities=16% Similarity=0.083 Sum_probs=279.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHH
Q 005603 291 AEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLA 370 (688)
Q Consensus 291 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 370 (688)
...+...|..++..|++++|..++.++++.+|.++.+|+.||.+|...|+.+++...+-.+. ..+|.. .
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA---------HL~p~d--~ 207 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA---------HLNPKD--Y 207 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHH---------hcCCCC--h
Confidence 44556677788888999999999999999999999999999999999999999998877774 445555 5
Q ss_pred HHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCc-
Q 005603 371 EAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNS- 449 (688)
Q Consensus 371 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~- 449 (688)
..|..++.....+|.+ ++|.-+|.++++.+|.+....+..+.+|.+.|+...|.+.|.+++...|...
T Consensus 208 e~W~~ladls~~~~~i-----------~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~ 276 (895)
T KOG2076|consen 208 ELWKRLADLSEQLGNI-----------NQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDI 276 (895)
T ss_pred HHHHHHHHHHHhcccH-----------HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhH
Confidence 8899999999999999 9999999999999999999999999999999999999999999999999432
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--HHhhHHhhh
Q 005603 450 ---GRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAM--IQAQRELHS 524 (688)
Q Consensus 450 ---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~ 524 (688)
...-...+..+...++-+.|++.++.++.........+-+..++.++....+++.|.......... .+++ ..++
T Consensus 277 er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~-~e~~ 355 (895)
T KOG2076|consen 277 ERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDD-SEWD 355 (895)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCCh-hhhh
Confidence 123334567778888889999999999984443345566778899999999999998877665551 1111 0010
Q ss_pred hc--cccccccccccccCCcchHHH-HHHHHHHHHHcCChhHHHHHHHHHHhcCC-CChhHHHHHHHHHHHcCCHHHHHH
Q 005603 525 KN--FHKTKYITSEAPSVKNLEIAT-WQDLATIYMKLGSLPDAEICTEKAKSIEF-YSPGSWHTTGMLFEAQSQYKEALV 600 (688)
Q Consensus 525 ~~--~~~~~~~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~ 600 (688)
.. ....-..+......-+.+..+ ...++.+....++..+++..+..--...| +.+..+..++..+...|++.+|+.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~ 435 (895)
T KOG2076|consen 356 TDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALR 435 (895)
T ss_pred hhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHH
Confidence 00 000011122222222233333 55555556666666666655544333223 457788999999999999999999
Q ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005603 601 SFSISLAIEPD-YIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAY 676 (688)
Q Consensus 601 ~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 676 (688)
+|.......+. +...|+.+|.+|..+|.++ +|+.+|++++...|++.++...|+.++..+|+.++|.+.+++..
T Consensus 436 ~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e--~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 436 LLSPITNREGYQNAFVWYKLARCYMELGEYE--EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHhcCccccchhhhHHHHHHHHHHhhHH--HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99888876554 4668999999999999998 99999999999999999999999999999999999999888766
No 47
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=5.2e-20 Score=181.46 Aligned_cols=429 Identities=14% Similarity=0.075 Sum_probs=282.6
Q ss_pred HHHHHHcCCHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHhcCccCCCCCccccCCCccCCCchHHHHHHHHHHHH
Q 005603 201 PHLWIKAGLLEEAIIAYRRALVKPWNLDPKKVASVQRDLAVTLLYGGVEARLPPELKVWGPIAPKDNVEEAILLLLILME 280 (688)
Q Consensus 201 ~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~eea~~~l~~~~~ 280 (688)
|+..+..|+++.|+..|-.++..+|. ++. +++ .....|...+.+++|+.- .
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~-nhv-------------lyS----------nrsaa~a~~~~~~~al~d-----a 59 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPT-NHV-------------LYS----------NRSAAYASLGSYEKALKD-----A 59 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCC-ccc-------------hhc----------chHHHHHHHhhHHHHHHH-----H
Confidence 45677899999999999999999543 111 111 112245566778888654 4
Q ss_pred HHHhhhcCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHH------hH--
Q 005603 281 KVASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKK------DQ-- 352 (688)
Q Consensus 281 ~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~------~l-- 352 (688)
....+..|.-+..|..+|.++.-.|+|++|+..|.+.|+.+|++......++.++...... .+.|.. ..
T Consensus 60 ~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~---~~~~~~p~~~~~l~~~ 136 (539)
T KOG0548|consen 60 TKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAA---DQLFTKPYFHEKLANL 136 (539)
T ss_pred HHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHh---hhhccCcHHHHHhhcC
Confidence 5667788999999999999999999999999999999999999999999998887222100 111110 00
Q ss_pred ----------HHHHhHhhhcccchhhH-----HHHHHHHHHHHH-------hhhhhc-cc--hH-Hh-------hHHHHH
Q 005603 353 ----------VSRGVIQSTTSQKEHFL-----AEAYKFLGICYG-------NVARKS-IS--DT-ER-------VFFQKE 399 (688)
Q Consensus 353 ----------~~~~~~~~~~~~~~~~~-----~~~~~~lg~~~~-------~~~~~~-~~--~~-~~-------~~~~~~ 399 (688)
.....+...+.+|..+. +.....+|.... ..+... .. .- .+ .+...+
T Consensus 137 p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~e 216 (539)
T KOG0548|consen 137 PLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTE 216 (539)
T ss_pred hhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHH
Confidence 00001111122221110 111111111110 000000 00 00 00 111111
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 005603 400 ALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDE 479 (688)
Q Consensus 400 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 479 (688)
-... .........+|.......++..|++.|..+++++ .+. ..+...+.++...|.+.+++.....+++.
T Consensus 217 e~~~--------k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~i-t~~~n~aA~~~e~~~~~~c~~~c~~a~E~ 286 (539)
T KOG0548|consen 217 ERRV--------KEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDI-TYLNNIAAVYLERGKYAECIELCEKAVEV 286 (539)
T ss_pred HHHH--------HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhh-HHHHHHHHHHHhccHHHHhhcchHHHHHH
Confidence 1111 1122345567778888888888888888888887 555 77777788888888888888777777765
Q ss_pred cCCC-----CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhcc--ccccccccccccCCcchHHHHHHHH
Q 005603 480 AGSM-----DQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNF--HKTKYITSEAPSVKNLEIATWQDLA 552 (688)
Q Consensus 480 ~p~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~la 552 (688)
.... .-...+..+|..+...++++.|+.+|.+++..... ++...... .+.........-..|.-..--..-|
T Consensus 287 gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kG 365 (539)
T KOG0548|consen 287 GRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKG 365 (539)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHH
Confidence 4310 01122333555666777788888888887765332 11111110 0111111112222333455556679
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChH
Q 005603 553 TIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMP 632 (688)
Q Consensus 553 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~ 632 (688)
..++..|+|..|+..|.+++..+|+++..|.+.|.||..+|.+..|+...+.+++++|+...+|...|.++..+.+|+
T Consensus 366 ne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~yd-- 443 (539)
T KOG0548|consen 366 NEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYD-- 443 (539)
T ss_pred HHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005603 633 IARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQA 674 (688)
Q Consensus 633 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 674 (688)
+|.+.|+++++.+|++.++.-.+..+...+.......+..++
T Consensus 444 kAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 444 KALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 999999999999999999998888888764443344444444
No 48
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.87 E-value=3.1e-22 Score=198.49 Aligned_cols=264 Identities=20% Similarity=0.146 Sum_probs=124.0
Q ss_pred HHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHH-Hc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHH
Q 005603 374 KFLGICYGNVARKSISDTERVFFQKEALESLNCAF-LN-EREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGR 451 (688)
Q Consensus 374 ~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 451 (688)
+.++.++...|++ ++|++++++.+ .. .|+++..|..+|.+....++++.|+..|++++..++.++ .
T Consensus 12 l~~A~~~~~~~~~-----------~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~-~ 79 (280)
T PF13429_consen 12 LRLARLLYQRGDY-----------EKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANP-Q 79 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccc-----------cccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence 3668999999999 99999997665 44 488999999999999999999999999999999999988 8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhcccccc
Q 005603 452 GWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTK 531 (688)
Q Consensus 452 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 531 (688)
.+..++.+ ...+++++|+.++.++.+..+ ++..+.....++...++++++...++++....+
T Consensus 80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~---~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~-------------- 141 (280)
T PF13429_consen 80 DYERLIQL-LQDGDPEEALKLAEKAYERDG---DPRYLLSALQLYYRLGDYDEAEELLEKLEELPA-------------- 141 (280)
T ss_dssp ------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---------------
T ss_pred cccccccc-ccccccccccccccccccccc---ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC--------------
Confidence 88888888 799999999999999987765 466677788899999999999999999875421
Q ss_pred ccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005603 532 YITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPD 611 (688)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 611 (688)
.+.++..|..+|.++...|++++|+.+|+++++.+|+++.++..++.++...|+++++...+....+..|+
T Consensus 142 ---------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~ 212 (280)
T PF13429_consen 142 ---------APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPD 212 (280)
T ss_dssp -----------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT
T ss_pred ---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC
Confidence 23478999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 005603 612 YIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYEL 678 (688)
Q Consensus 612 ~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 678 (688)
++..+..+|.++..+|+++ +|+.+|+++++.+|+++.++..+|.++...|+.++|..++++++..
T Consensus 213 ~~~~~~~la~~~~~lg~~~--~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 213 DPDLWDALAAAYLQLGRYE--EALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp SCCHCHHHHHHHHHHT-HH--HHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred HHHHHHHHHHHhccccccc--cccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9899999999999999998 9999999999999999999999999999999999999999998763
No 49
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.87 E-value=1.2e-19 Score=167.16 Aligned_cols=239 Identities=15% Similarity=0.100 Sum_probs=223.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHH
Q 005603 419 YYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIA 498 (688)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~ 498 (688)
..+|.+|.+.|-+.+|.+.++..++..|. + +.+..++.+|....+...|+..+.+.++..| .+...+...++++..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~-~-dTfllLskvY~ridQP~~AL~~~~~gld~fP--~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPH-P-DTFLLLSKVYQRIDQPERALLVIGEGLDSFP--FDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCc-h-hHHHHHHHHHHHhccHHHHHHHHhhhhhcCC--chhhhhhhhHHHHHH
Confidence 56999999999999999999999998876 3 8999999999999999999999999999999 899999999999999
Q ss_pred cCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 005603 499 QEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYS 578 (688)
Q Consensus 499 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 578 (688)
+++.++|+++|+.+++..|. +.++...+|.-|+..++++-|+.+|++.+++.-.+
T Consensus 303 m~~~~~a~~lYk~vlk~~~~-------------------------nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s 357 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPI-------------------------NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS 357 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCc-------------------------cceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC
Confidence 99999999999999999665 67888888999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--C-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 005603 579 PGSWHTTGMLFEAQSQYKEALVSFSISLAIEP--D-YIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNL 655 (688)
Q Consensus 579 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~-~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~l 655 (688)
++.+.++|.|+...++++-++..|++++.... + ..++|+++|.+....|++. -|..+|+-++..+|++.+++.+|
T Consensus 358 peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~n--lA~rcfrlaL~~d~~h~ealnNL 435 (478)
T KOG1129|consen 358 PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFN--LAKRCFRLALTSDAQHGEALNNL 435 (478)
T ss_pred hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchH--HHHHHHHHHhccCcchHHHHHhH
Confidence 99999999999999999999999999998643 3 4689999999999999999 99999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcccCCCCCCCCC
Q 005603 656 GLISKMEGSLQQAADYFQAAYELKLSAPVQSFV 688 (688)
Q Consensus 656 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~f~ 688 (688)
|.+-.+.|+.++|..+++.|-...|+-....|+
T Consensus 436 avL~~r~G~i~~Arsll~~A~s~~P~m~E~~~N 468 (478)
T KOG1129|consen 436 AVLAARSGDILGARSLLNAAKSVMPDMAEVTTN 468 (478)
T ss_pred HHHHhhcCchHHHHHHHHHhhhhCccccccccc
Confidence 999999999999999999999999987766653
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.87 E-value=1.3e-21 Score=194.08 Aligned_cols=265 Identities=19% Similarity=0.195 Sum_probs=113.3
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcc-cchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHH
Q 005603 328 WYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTS-QKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNC 406 (688)
Q Consensus 328 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 406 (688)
.+.+|.+++..|++++|++++++.+ . .. .++. ...|..+|.+....+++ ++|+..|++
T Consensus 11 ~l~~A~~~~~~~~~~~Al~~L~~~~------~--~~~~~~~--~~~~~~~a~La~~~~~~-----------~~A~~ay~~ 69 (280)
T PF13429_consen 11 ALRLARLLYQRGDYEKALEVLKKAA------Q--KIAPPDD--PEYWRLLADLAWSLGDY-----------DEAIEAYEK 69 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccc------c--ccccccc--ccccccccccccccccc-----------ccccccccc
Confidence 3466888888888888888886654 1 11 1222 46777788888888888 888888888
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcH
Q 005603 407 AFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQL 486 (688)
Q Consensus 407 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 486 (688)
++..++.++..+..++.+ ...+++++|+.++++..+..++ + ..+.....++...++++++...++++....+...+.
T Consensus 70 l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~-~-~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 146 (280)
T PF13429_consen 70 LLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGD-P-RYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSA 146 (280)
T ss_dssp ---------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-H
T ss_pred cccccccccccccccccc-cccccccccccccccccccccc-c-chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCH
Confidence 888888877777777777 6888888888888888776543 4 667777778888888888888888877544222677
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHH
Q 005603 487 ELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEI 566 (688)
Q Consensus 487 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 566 (688)
.++..+|.++...|++++|+..|++++...|+ ++.++..++.++...|+++++..
T Consensus 147 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-------------------------~~~~~~~l~~~li~~~~~~~~~~ 201 (280)
T PF13429_consen 147 RFWLALAEIYEQLGDPDKALRDYRKALELDPD-------------------------DPDARNALAWLLIDMGDYDEARE 201 (280)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--------------------------HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------------------------CHHHHHHHHHHHHHCCChHHHHH
Confidence 88888889999999999999999999988776 68888888888888888888888
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 005603 567 CTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALR 643 (688)
Q Consensus 567 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~ 643 (688)
.+.......|.++..|..+|.++...|++++|+.+|+++++.+|+++..+..+|.++...|+.+ +|..++.++++
T Consensus 202 ~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~--~A~~~~~~~~~ 276 (280)
T PF13429_consen 202 ALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKD--EALRLRRQALR 276 (280)
T ss_dssp HHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------------------
T ss_pred HHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccc--ccccccccccc
Confidence 8888888878888888888999999999999999999999989999999999999999999988 88888887765
No 51
>PRK12370 invasion protein regulator; Provisional
Probab=99.86 E-value=1.6e-19 Score=195.35 Aligned_cols=249 Identities=12% Similarity=-0.058 Sum_probs=217.0
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHH
Q 005603 398 KEALESLNCAFLNEREDPEMMYYLGLEHAVQ---------RNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKD 468 (688)
Q Consensus 398 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~ 468 (688)
++|+..|+++++++|+++.++..+|.++... +++++|+..++++++++|+++ .++..+|.++...|++++
T Consensus 278 ~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~-~a~~~lg~~~~~~g~~~~ 356 (553)
T PRK12370 278 QQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNP-QALGLLGLINTIHSEYIV 356 (553)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHccCHHH
Confidence 8999999999999999999999999887643 348999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHH
Q 005603 469 AQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATW 548 (688)
Q Consensus 469 A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (688)
|+..|+++++.+| ++..+++.+|.++...|++++|+..+++++.++|. ++..+
T Consensus 357 A~~~~~~Al~l~P--~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-------------------------~~~~~ 409 (553)
T PRK12370 357 GSLLFKQANLLSP--ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-------------------------RAAAG 409 (553)
T ss_pred HHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-------------------------ChhhH
Confidence 9999999999999 89999999999999999999999999999999776 45555
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q 005603 549 QDLATIYMKLGSLPDAEICTEKAKSIE-FYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLG 627 (688)
Q Consensus 549 ~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 627 (688)
..++.++...|++++|+..+++++... |+++..+..+|.++..+|++++|...+.+.....|....++..++..+...|
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 666777888999999999999999875 7888999999999999999999999999999999999999999999999888
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccc
Q 005603 628 RQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELK 679 (688)
Q Consensus 628 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 679 (688)
+ +|...+++.++.....+.-......+|.-.|+.+.+..+ +++.+..
T Consensus 490 ~----~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 490 E----RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred H----HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 4 677777776654333222233378888889998888887 7766543
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.86 E-value=6.4e-19 Score=183.75 Aligned_cols=302 Identities=13% Similarity=-0.064 Sum_probs=248.1
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHH
Q 005603 328 WYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCA 407 (688)
Q Consensus 328 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 407 (688)
....|......|+++.|.+.+.++. ...+.+ ...+...|.+...+|++ ++|..+|.++
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~---------~~~~~~--~~~~llaA~aa~~~g~~-----------~~A~~~l~~a 144 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNA---------DHAAEP--VLNLIKAAEAAQQRGDE-----------ARANQHLEEA 144 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHh---------hcCCCC--HHHHHHHHHHHHHCCCH-----------HHHHHHHHHH
Confidence 3566888899999999999999885 233333 56677889999999999 9999999999
Q ss_pred HHcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcH
Q 005603 408 FLNEREDP-EMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQL 486 (688)
Q Consensus 408 l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 486 (688)
.+..|++. .+....+.++...|++++|...++..++..|+++ .++..++.++...|++++|.+.+.+..+... .+.
T Consensus 145 ~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~-~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~--~~~ 221 (409)
T TIGR00540 145 AELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHK-EVLKLAEEAYIRSGAWQALDDIIDNMAKAGL--FDD 221 (409)
T ss_pred HHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC--CCH
Confidence 99888875 5666679999999999999999999999999999 9999999999999999999999999997744 222
Q ss_pred HHH----HHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChh
Q 005603 487 ELL----RLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLP 562 (688)
Q Consensus 487 ~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 562 (688)
... .....-+...+..+++.+.+.++....|.. .+.++.++..++..+...|+++
T Consensus 222 ~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~---------------------~~~~~~l~~~~a~~l~~~g~~~ 280 (409)
T TIGR00540 222 EEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRH---------------------RRHNIALKIALAEHLIDCDDHD 280 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHH---------------------HhCCHHHHHHHHHHHHHCCChH
Confidence 211 122222244455555666777777765531 2336899999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhHH--HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHhCCCChHHHHHHH
Q 005603 563 DAEICTEKAKSIEFYSPGSW--HTTGMLFEAQSQYKEALVSFSISLAIEPDYI--PSIISTAEILMKLGRQSMPIARSFL 638 (688)
Q Consensus 563 ~A~~~~~~al~~~p~~~~~~--~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~~~A~~~~ 638 (688)
+|...++++++..|++.... ..........++.+.+++.++++++..|+++ ..+..+|.++.+.|+++ +|.++|
T Consensus 281 ~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~--~A~~~l 358 (409)
T TIGR00540 281 SAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFI--EAADAF 358 (409)
T ss_pred HHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHH--HHHHHH
Confidence 99999999999999987532 2233334456888999999999999999999 88999999999999999 999999
Q ss_pred H--HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 005603 639 M--NALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYEL 678 (688)
Q Consensus 639 ~--~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 678 (688)
+ .+++..|++.. +..+|.++...|+.++|.++|++++..
T Consensus 359 e~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 359 KNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9 57788887655 569999999999999999999998763
No 53
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=5.2e-18 Score=161.19 Aligned_cols=462 Identities=16% Similarity=0.101 Sum_probs=313.0
Q ss_pred hhHhhhcCCHHHHHhhhhcCCCCccccchhhhhhhhcccccccCCCCCCCCCCCCCCCcchhHHHHHHHHHHHhhhhHHh
Q 005603 74 GRLEYQRGNYDAALQVFQGIDIVSLTPRMTRAVVERTRPLRKHRSKGEKADSVPPPGLMSLHSISLLLEAILLKAKSLEE 153 (688)
Q Consensus 74 g~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 153 (688)
....+.+.+|..|++.|..+.-.. ..+++++.+.. .+++.+ +.-. .-.|.-+.++.|+-.
T Consensus 50 ~~~~~h~r~yr~a~~~~~~~~~~~-~s~~r~s~~~~--------------~s~~~S---~~~~--~~~e~~r~~aecy~~ 109 (564)
T KOG1174|consen 50 LNANYKERNYRAALRHFDEIIHKR-RLMMRHKNAVL--------------VAIESS---YPEF--GDAEQRRRAAECYRQ 109 (564)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHhh-Hhhcccccccc--------------cccccc---CCCc--ccHHHHHHHHHHHHH
Confidence 456677889999999988764111 22222211110 111111 0101 124667888999999
Q ss_pred hCChHHHHHHHHHHHHHHHhcCCCCCCCCCCccccHHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHhhCCCCCCChhhHH
Q 005603 154 LGHCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKALELLPHLWIKAGLLEEAIIAYRRALVKPWNLDPKKVA 233 (688)
Q Consensus 154 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~ 233 (688)
.|+-++|+... . +.|+... ..+..-.++.++.+.|+-.++...|...+..-| -..+
T Consensus 110 ~~n~~~Ai~~l----~--------~~p~t~r--------~p~inlMla~l~~~g~r~~~~vl~ykevvrecp----~aL~ 165 (564)
T KOG1174|consen 110 IGNTDMAIETL----L--------QVPPTLR--------SPRINLMLARLQHHGSRHKEAVLAYKEVIRECP----MALQ 165 (564)
T ss_pred HccchHHHHHH----h--------cCCcccc--------chhHHHHHHHHHhccccccHHHHhhhHHHHhcc----hHHH
Confidence 99999998432 2 2333222 112223456778888888889888888876611 1111
Q ss_pred HHHHHHHHHHHhcCccCCCCCccccCCCccCCCchHHHHHHHHHHHHHHHhhhcCCcHHHHH---HHHHHHHhcCCHHHH
Q 005603 234 SVQRDLAVTLLYGGVEARLPPELKVWGPIAPKDNVEEAILLLLILMEKVASKEMEWDAEIMD---HLTYALSVTGQFELL 310 (688)
Q Consensus 234 ~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~eea~~~l~~~~~~~~l~~~p~~~~~~~---~l~~~~~~~g~~~~A 310 (688)
.+ ..++..++.. + +-+ +.+-......|.++..+. .++.++.-..-+.-+
T Consensus 166 ~i-----~~ll~l~v~g-----------~------e~~------S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~ 217 (564)
T KOG1174|consen 166 VI-----EALLELGVNG-----------N------EIN------SLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQ 217 (564)
T ss_pred HH-----HHHHHHhhcc-----------h------hhh------hhhhhheecCCCccHHHHHHHHHHHHHhcccchhhh
Confidence 00 1111111110 0 000 001112223333443332 234444444445556
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccch
Q 005603 311 AEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISD 390 (688)
Q Consensus 311 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~ 390 (688)
..++-+-...-|++.+.+..+|.|++..|++.+|+..|+++. ..+|.. ....-..|..+...|++
T Consensus 218 t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~---------~~dpy~--i~~MD~Ya~LL~~eg~~---- 282 (564)
T KOG1174|consen 218 TFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTL---------CANPDN--VEAMDLYAVLLGQEGGC---- 282 (564)
T ss_pred HHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHh---------hCChhh--hhhHHHHHHHHHhccCH----
Confidence 666667777888899999999999999999999999998885 333333 45555667777788887
Q ss_pred HHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 005603 391 TERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQ 470 (688)
Q Consensus 391 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~ 470 (688)
++-...-...+..+.....-|+--+...+..+++..|+.+.+++++.+|.+. .++...|.++...++.++|+
T Consensus 283 -------e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~-~alilKG~lL~~~~R~~~A~ 354 (564)
T KOG1174|consen 283 -------EQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNH-EALILKGRLLIALERHTQAV 354 (564)
T ss_pred -------hhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccc-hHHHhccHHHHhccchHHHH
Confidence 7777777777777777777888888888889999999999999999999998 99999999999999999999
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHH
Q 005603 471 SIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQD 550 (688)
Q Consensus 471 ~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (688)
-.|+.+..+.| ...+.|..+..+|...|++.+|.-..+.++...|. ++.++..
T Consensus 355 IaFR~Aq~Lap--~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~-------------------------sA~~LtL 407 (564)
T KOG1174|consen 355 IAFRTAQMLAP--YRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQN-------------------------SARSLTL 407 (564)
T ss_pred HHHHHHHhcch--hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhc-------------------------chhhhhh
Confidence 99999999998 78888999999999999999999998888888777 4555555
Q ss_pred HH-HHHH-HcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC
Q 005603 551 LA-TIYM-KLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGR 628 (688)
Q Consensus 551 la-~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 628 (688)
+| .++. .-.--++|.+++++++.+.|....+-..++.++...|.++.++..+++.+...|+. ..+..+|.++...+.
T Consensus 408 ~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne 486 (564)
T KOG1174|consen 408 FGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNE 486 (564)
T ss_pred hcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhh
Confidence 54 3332 22334678888888888888888888888888888888888888888888777654 467778888888877
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005603 629 QSMPIARSFLMNALRLEPTNHDAWMNLGLISK 660 (688)
Q Consensus 629 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 660 (688)
+. +|.++|..+++++|++..+...+-.+-.
T Consensus 487 ~Q--~am~~y~~ALr~dP~~~~sl~Gl~~lEK 516 (564)
T KOG1174|consen 487 PQ--KAMEYYYKALRQDPKSKRTLRGLRLLEK 516 (564)
T ss_pred HH--HHHHHHHHHHhcCccchHHHHHHHHHHh
Confidence 77 8888888888888887776666555443
No 54
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=1.7e-19 Score=166.12 Aligned_cols=283 Identities=16% Similarity=0.095 Sum_probs=241.7
Q ss_pred HHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCC
Q 005603 334 CYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNERE 413 (688)
Q Consensus 334 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 413 (688)
+++...+...|-......+..+.+-. ..........+....+|.||...|.+ .+|.+.++.+++..|
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~-s~~~~~~~dwwWk~Q~gkCylrLgm~-----------r~AekqlqssL~q~~- 254 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKP-SGSTGCTLDWWWKQQMGKCYLRLGMP-----------RRAEKQLQSSLTQFP- 254 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccc-cccccchHhHHHHHHHHHHHHHhcCh-----------hhhHHHHHHHhhcCC-
Confidence 45556666666554444431111100 11111122234456799999999999 999999999998765
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 005603 414 DPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKA 493 (688)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la 493 (688)
.++.+..|+.+|.+..+...|+..+.+.++..|.+. ..+...++++..++++++|.++|+.+++.+| .+.++.-.+|
T Consensus 255 ~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~V-T~l~g~ARi~eam~~~~~a~~lYk~vlk~~~--~nvEaiAcia 331 (478)
T KOG1129|consen 255 HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDV-TYLLGQARIHEAMEQQEDALQLYKLVLKLHP--INVEAIACIA 331 (478)
T ss_pred chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchh-hhhhhhHHHHHHHHhHHHHHHHHHHHHhcCC--ccceeeeeee
Confidence 688999999999999999999999999999999997 9999999999999999999999999999999 8999998999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 005603 494 VLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKS 573 (688)
Q Consensus 494 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 573 (688)
.-|+..++++-|+.+|++++++.- .+++.+.++|.+.+..++++-++.+|++++.
T Consensus 332 ~~yfY~~~PE~AlryYRRiLqmG~-------------------------~speLf~NigLCC~yaqQ~D~~L~sf~RAls 386 (478)
T KOG1129|consen 332 VGYFYDNNPEMALRYYRRILQMGA-------------------------QSPELFCNIGLCCLYAQQIDLVLPSFQRALS 386 (478)
T ss_pred eccccCCChHHHHHHHHHHHHhcC-------------------------CChHHHhhHHHHHHhhcchhhhHHHHHHHHh
Confidence 999999999999999999999833 3799999999999999999999999999998
Q ss_pred cCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHH
Q 005603 574 IEF---YSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHD 650 (688)
Q Consensus 574 ~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~ 650 (688)
... .-.++|+++|.+....|++.-|..+|+-++..++++..++.++|.+-.+.|+.+ +|..++..+-...|.-.+
T Consensus 387 tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~--~Arsll~~A~s~~P~m~E 464 (478)
T KOG1129|consen 387 TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDIL--GARSLLNAAKSVMPDMAE 464 (478)
T ss_pred hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchH--HHHHHHHHhhhhCccccc
Confidence 654 346899999999999999999999999999999999999999999999999999 999999999999999888
Q ss_pred HHHHHHHHH
Q 005603 651 AWMNLGLIS 659 (688)
Q Consensus 651 ~~~~lg~~~ 659 (688)
..++++.+-
T Consensus 465 ~~~Nl~~~s 473 (478)
T KOG1129|consen 465 VTTNLQFMS 473 (478)
T ss_pred cccceeEEe
Confidence 877776543
No 55
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.84 E-value=2.5e-18 Score=179.72 Aligned_cols=382 Identities=15% Similarity=0.089 Sum_probs=306.4
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHH
Q 005603 268 VEEAILLLLILMEKVASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNL 347 (688)
Q Consensus 268 ~eea~~~l~~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 347 (688)
.+.|+..+ -..++..|.-..+|..||.+|...-+...|.++|.++..+++.+.+++-..+..|....+++.|..+
T Consensus 474 ~~~al~al-----i~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 474 SALALHAL-----IRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred HHHHHHHH-----HHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHH
Confidence 44555444 2345677788899999999999999999999999999999999999999999999999999999988
Q ss_pred HHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 005603 348 LKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAV 427 (688)
Q Consensus 348 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 427 (688)
.-..- ...+.......|..+|..|...++. .+|+..|+.++..+|.+...|..+|.+|..
T Consensus 549 ~l~~~---------qka~a~~~k~nW~~rG~yyLea~n~-----------h~aV~~fQsALR~dPkD~n~W~gLGeAY~~ 608 (1238)
T KOG1127|consen 549 CLRAA---------QKAPAFACKENWVQRGPYYLEAHNL-----------HGAVCEFQSALRTDPKDYNLWLGLGEAYPE 608 (1238)
T ss_pred HHHHh---------hhchHHHHHhhhhhccccccCccch-----------hhHHHHHHHHhcCCchhHHHHHHHHHHHHh
Confidence 44332 3334444456777799999999999 999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-----CcHHHHHHHHHHHHHcCCh
Q 005603 428 QRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSM-----DQLELLRLKAVLQIAQEQP 502 (688)
Q Consensus 428 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~~la~~~~~~g~~ 502 (688)
.|.+..|++.|.++..++|.+. -+.+..+.+....|+|.+|+..+...+.....+ ..++.+...+..+...|-.
T Consensus 609 sGry~~AlKvF~kAs~LrP~s~-y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~ 687 (1238)
T KOG1127|consen 609 SGRYSHALKVFTKASLLRPLSK-YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQ 687 (1238)
T ss_pred cCceehHHHhhhhhHhcCcHhH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998 999999999999999999999999888654421 3455666677777777777
Q ss_pred HHHHHHHHHHHHHHHhhHH--------hhhhccc-------------------------c-------------ccccccc
Q 005603 503 KQAIGTYRILLAMIQAQRE--------LHSKNFH-------------------------K-------------TKYITSE 536 (688)
Q Consensus 503 ~~A~~~~~~al~~~~~~~~--------~~~~~~~-------------------------~-------------~~~~~~~ 536 (688)
.+|...+++.++..-.... .+..... . +..++..
T Consensus 688 ~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~ 767 (1238)
T KOG1127|consen 688 KKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA 767 (1238)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH
Confidence 7788887777764322111 1100000 0 0000000
Q ss_pred cccCCcchHHHHHHHHHHHHH--------cCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005603 537 APSVKNLEIATWQDLATIYMK--------LGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAI 608 (688)
Q Consensus 537 ~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 608 (688)
.+.. ..++..|+++|.-|.+ +.+-..|+.++.+++++..++...|+.||.+ ...|++.-|..+|-+.+..
T Consensus 768 hlsl-~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s 845 (1238)
T KOG1127|consen 768 HLSL-AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS 845 (1238)
T ss_pred HHHH-hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc
Confidence 0000 1236778888887776 2334579999999999999999999999988 5668999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccc
Q 005603 609 EPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELK 679 (688)
Q Consensus 609 ~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 679 (688)
.|.....|.++|.++.+..+++ -|...|.++..++|.+...|...+.+....|+.-++...|....++.
T Consensus 846 ep~~~~~W~NlgvL~l~n~d~E--~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~ 914 (1238)
T KOG1127|consen 846 EPTCHCQWLNLGVLVLENQDFE--HAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELC 914 (1238)
T ss_pred cccchhheeccceeEEecccHH--HhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhh
Confidence 9999999999999999999988 99999999999999999999999999999999999998888754443
No 56
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.83 E-value=2.4e-17 Score=170.93 Aligned_cols=300 Identities=12% Similarity=-0.011 Sum_probs=234.1
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHH
Q 005603 328 WYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCA 407 (688)
Q Consensus 328 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 407 (688)
.+.-|......|++++|.+.+.+.. ...+. ....+...+......|++ +.|..+|.++
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~----------~~~~~-p~l~~llaA~aA~~~g~~-----------~~A~~~l~~A 144 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNA----------DHAEQ-PVVNYLLAAEAAQQRGDE-----------ARANQHLERA 144 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH----------hcccc-hHHHHHHHHHHHHHCCCH-----------HHHHHHHHHH
Confidence 4566778888999999998887764 11111 133344446666889999 9999999999
Q ss_pred HHcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcH
Q 005603 408 FLNEREDPE-MMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQL 486 (688)
Q Consensus 408 l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 486 (688)
.+.+|++.. .....+.++...|++++|+..+++..+..|+++ .++..++.++...|++++|+.++.+..+..+ .+.
T Consensus 145 ~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~-~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~--~~~ 221 (398)
T PRK10747 145 AELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHP-EVLRLAEQAYIRTGAWSSLLDILPSMAKAHV--GDE 221 (398)
T ss_pred HhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC--CCH
Confidence 999998754 334558999999999999999999999999999 9999999999999999999999999887765 222
Q ss_pred HHHH-HHHHHH---HHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChh
Q 005603 487 ELLR-LKAVLQ---IAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLP 562 (688)
Q Consensus 487 ~~~~-~la~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 562 (688)
.... .....+ ..........+.+.+.++..|.. .+.++.+...++..+...|+.+
T Consensus 222 ~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~---------------------~~~~~~~~~~~A~~l~~~g~~~ 280 (398)
T PRK10747 222 EHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK---------------------TRHQVALQVAMAEHLIECDDHD 280 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH---------------------HhCCHHHHHHHHHHHHHCCCHH
Confidence 2111 111111 11111112233344443333321 2347999999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 005603 563 DAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNAL 642 (688)
Q Consensus 563 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al 642 (688)
+|...++++++. |.++......+.+ ..++.+++++..++.++.+|+++..+..+|.++...++++ +|.++|++++
T Consensus 281 ~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~--~A~~~le~al 355 (398)
T PRK10747 281 TAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQ--EASLAFRAAL 355 (398)
T ss_pred HHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHH
Confidence 999999999994 5456554444444 4499999999999999999999999999999999999999 9999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccc
Q 005603 643 RLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELK 679 (688)
Q Consensus 643 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 679 (688)
+..|++. .+..++.++...|+.++|.++|++++.+.
T Consensus 356 ~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 356 KQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred hcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 9999864 46789999999999999999999998864
No 57
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.83 E-value=2.1e-17 Score=172.93 Aligned_cols=559 Identities=14% Similarity=0.044 Sum_probs=365.0
Q ss_pred cchhhhhhhhhhhhcccHHHHHHHhhhHhhhcCCHHHHHhhhhcCCCCccccchhhhhhhhcccccccCCCCCCCCCCCC
Q 005603 49 IQVDEAESTLKEALSLNYEEARALLGRLEYQRGNYDAALQVFQGIDIVSLTPRMTRAVVERTRPLRKHRSKGEKADSVPP 128 (688)
Q Consensus 49 g~~~~A~~~l~~~l~~~~~~a~~llg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (688)
+..--|-..+++.++-++.. ..-.|.+.....+|..|...+..+. ... .+.+++++-.+-+.+.-.+.
T Consensus 382 ~~l~~as~~Ydn~lSaD~sn-~~akgl~~ie~~~y~Daa~tl~lv~--~~s-~nd~slselswc~~~~~ek~-------- 449 (1238)
T KOG1127|consen 382 SILSWASICYDNALSADASN-QRAKGLAPIEANVYTDAAITLDLVS--SLS-FNDDSLSELSWCLPRALEKM-------- 449 (1238)
T ss_pred HHHHHHHHHHHHhhcCChhh-hhhcchhHHHHhhchHHHHHHHHHH--Hhh-cCchhhhHhhHHHHHhHHhh--------
Confidence 34444555666666665544 2224678888899999998887664 111 33344433222211111000
Q ss_pred CCCcchhHHHHHHHHHHHhhhhHHhhCChHHHHHHHHHHHHHHHhcCCCCCCCCCCccccHHHHHHHHHHHhHHHHHHcC
Q 005603 129 PGLMSLHSISLLLEAILLKAKSLEELGHCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKALELLPHLWIKAG 208 (688)
Q Consensus 129 ~~~~~~~~~~~~~e~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g 208 (688)
|.+.... ..|.++..+.-=+...+.+.|...|-+.+.. -+.+..++..+|.+|..-.
T Consensus 450 ---mdva~~~-~~e~~~~w~a~~~~rK~~~~al~ali~alrl-------------------d~~~apaf~~LG~iYrd~~ 506 (1238)
T KOG1127|consen 450 ---MDVALLL-ECENSEFWVALGCMRKNSALALHALIRALRL-------------------DVSLAPAFAFLGQIYRDSD 506 (1238)
T ss_pred ---hhHHHHH-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-------------------ccchhHHHHHHHHHHHHHH
Confidence 1111111 1222222222112234566777666666653 1236678889999999999
Q ss_pred CHHHHHHHHHHhhCCCCCCChhhHHHH----------HHHHHHHHHhcCccCC----CCCccccCCCccCCCchHHHHHH
Q 005603 209 LLEEAIIAYRRALVKPWNLDPKKVASV----------QRDLAVTLLYGGVEAR----LPPELKVWGPIAPKDNVEEAILL 274 (688)
Q Consensus 209 ~~~eA~~~y~~al~~~~~~~~~~~~~~----------~~~~a~~ll~~~~~~~----~~~~~~~~~~~~~~~~~eea~~~ 274 (688)
+...|..+|++|.+.++... ...+.+ +..++. .+..+..+. ..+....+-.|...++...++.-
T Consensus 507 Dm~RA~kCf~KAFeLDatda-eaaaa~adtyae~~~we~a~~I-~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~ 584 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELDATDA-EAAAASADTYAEESTWEEAFEI-CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCE 584 (1238)
T ss_pred HHHHHHHHHHHHhcCCchhh-hhHHHHHHHhhccccHHHHHHH-HHHHhhhchHHHHHhhhhhccccccCccchhhHHHH
Confidence 99999999999999854311 111111 111222 222222111 00112333355567788888876
Q ss_pred HHHHHHHHHhhhcCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhH--
Q 005603 275 LLILMEKVASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQ-- 352 (688)
Q Consensus 275 l~~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l-- 352 (688)
+ ...+...|.|...|.-+|.+|..+|.+..|++.|.++...+|.+.-..+..|......|+|.+|+..+..++
T Consensus 585 f-----QsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 585 F-----QSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred H-----HHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 5 678889999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ---------------------------------HHHHhH-----------------------------------------
Q 005603 353 ---------------------------------VSRGVI----------------------------------------- 358 (688)
Q Consensus 353 ---------------------------------~~~~~~----------------------------------------- 358 (688)
+.++.+
T Consensus 660 ~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l 739 (1238)
T KOG1127|consen 660 FSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYL 739 (1238)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHH
Confidence 000000
Q ss_pred -------hhhcccc-hh----------------hHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCC
Q 005603 359 -------QSTTSQK-EH----------------FLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNERED 414 (688)
Q Consensus 359 -------~~~~~~~-~~----------------~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 414 (688)
+.....+ +. ..+..|+.+|..|...-.. ..+...+...|+.+++++++++.++
T Consensus 740 ~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~---l~et~~~~~~Ai~c~KkaV~L~ann 816 (1238)
T KOG1127|consen 740 IILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLL---LGETMKDACTAIRCCKKAVSLCANN 816 (1238)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHH---cCCcchhHHHHHHHHHHHHHHhhcc
Confidence 0000000 00 0022345555544431110 0011222268999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 005603 415 PEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAV 494 (688)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~ 494 (688)
...|..||.+ ...|++.-|..+|-+.+...|... ..|.++|.+.....+++.|...|.++..++| .+...|...+.
T Consensus 817 ~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~-~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP--~nl~~WlG~Al 892 (1238)
T KOG1127|consen 817 EGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCH-CQWLNLGVLVLENQDFEHAEPAFSSVQSLDP--LNLVQWLGEAL 892 (1238)
T ss_pred HHHHHHHHHh-hccchhhhhhhhhhhhhhccccch-hheeccceeEEecccHHHhhHHHHhhhhcCc--hhhHHHHHHHH
Confidence 9999999998 667999999999999999999998 9999999999999999999999999999999 89999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHH-----
Q 005603 495 LQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTE----- 569 (688)
Q Consensus 495 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~----- 569 (688)
+....|+.-++...|.......... ........|..--.....+|++++-+...+
T Consensus 893 i~eavG~ii~~~~lfaHs~el~~~~--------------------gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sA 952 (1238)
T KOG1127|consen 893 IPEAVGRIIERLILFAHSDELCSKE--------------------GKAKKFQYWLCATEIHLQNGNIEESINTARKISSA 952 (1238)
T ss_pred hHHHHHHHHHHHHHHHhhHHhhccc--------------------cccchhhHHHHHHHHHHhccchHHHHHHhhhhhhh
Confidence 9999999999999998865553331 111234455555566666666665554433
Q ss_pred -----HHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----C-CCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 005603 570 -----KAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAI-----E-PDYIPSIISTAEILMKLGRQSMPIARSFL 638 (688)
Q Consensus 570 -----~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~-p~~~~~~~~la~~~~~~g~~~~~~A~~~~ 638 (688)
+.+...|+...++...|.....++.+..|.....+.+.+ + ..+..+--..|++++..|.++ .|...+
T Consensus 953 s~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe--~A~~a~ 1030 (1238)
T KOG1127|consen 953 SLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFE--SAKKAS 1030 (1238)
T ss_pred HHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchh--hHhhhh
Confidence 334556888888888888888888888888888776643 1 122335566778888888876 555433
Q ss_pred HHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcccCCC
Q 005603 639 MNALRLEPTNH-DAWMNLGLISKMEGSLQQAADYFQAAYELKLSA 682 (688)
Q Consensus 639 ~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 682 (688)
.. .|... +--.......+-.|+++++.++|++|+.+..++
T Consensus 1031 ~~----~~~evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se 1071 (1238)
T KOG1127|consen 1031 WK----EWMEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSE 1071 (1238)
T ss_pred cc----cchhHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccc
Confidence 21 11111 111112222255777788888888877765544
No 58
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.83 E-value=1.2e-17 Score=174.10 Aligned_cols=302 Identities=11% Similarity=-0.049 Sum_probs=246.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHH
Q 005603 293 IMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEA 372 (688)
Q Consensus 293 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 372 (688)
....-|......|+++.|.+.+.++.+..|+....+...|.++...|+++.|...+.++. ...++.. ..+
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~---------~~~p~~~-l~~ 155 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAA---------ELAGNDN-ILV 155 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------HhCCcCc-hHH
Confidence 345678888899999999999999999999888888889999999999999999999986 2222220 134
Q ss_pred HHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHH
Q 005603 373 YKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRG 452 (688)
Q Consensus 373 ~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 452 (688)
....+.++...|++ ++|...+++..+..|+++.++..++.++...|++++|.+.+.+..+..+.++ ..
T Consensus 156 ~~~~a~l~l~~~~~-----------~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~-~~ 223 (409)
T TIGR00540 156 EIARTRILLAQNEL-----------HAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD-EE 223 (409)
T ss_pred HHHHHHHHHHCCCH-----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH-HH
Confidence 44568899999999 9999999999999999999999999999999999999999999998865544 32
Q ss_pred HH----HHHHHHHHcCCHHHHHHHHHHHHhhcCCC--CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhc
Q 005603 453 WK----LLALILSADQRLKDAQSIVDFSLDEAGSM--DQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKN 526 (688)
Q Consensus 453 ~~----~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 526 (688)
.. ....-+...+..+++.+.+..+....|.. +++.++..++..+...|++++|.+.++++++..|++
T Consensus 224 ~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~------- 296 (409)
T TIGR00540 224 FADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDD------- 296 (409)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc-------
Confidence 21 22222234445555566777777766621 478999999999999999999999999999997762
Q ss_pred cccccccccccccCCcchHHH--HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCh--hHHHHHHHHHHHcCCHHHHHHHH
Q 005603 527 FHKTKYITSEAPSVKNLEIAT--WQDLATIYMKLGSLPDAEICTEKAKSIEFYSP--GSWHTTGMLFEAQSQYKEALVSF 602 (688)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~ 602 (688)
... ...........++.+.+++.++++++..|+++ .....+|.++.+.|++++|.++|
T Consensus 297 ------------------~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~l 358 (409)
T TIGR00540 297 ------------------RAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAF 358 (409)
T ss_pred ------------------ccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHH
Confidence 221 12233333445788999999999999999999 88999999999999999999999
Q ss_pred H--HHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 005603 603 S--ISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRL 644 (688)
Q Consensus 603 ~--~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~ 644 (688)
+ .+++..|+... +..+|.++.+.|+.+ +|.+++++++..
T Consensus 359 e~a~a~~~~p~~~~-~~~La~ll~~~g~~~--~A~~~~~~~l~~ 399 (409)
T TIGR00540 359 KNVAACKEQLDAND-LAMAADAFDQAGDKA--EAAAMRQDSLGL 399 (409)
T ss_pred HHhHHhhcCCCHHH-HHHHHHHHHHcCCHH--HHHHHHHHHHHH
Confidence 9 68888887765 559999999999998 999999998764
No 59
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=7.9e-19 Score=174.66 Aligned_cols=256 Identities=16% Similarity=0.159 Sum_probs=208.3
Q ss_pred HHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHH
Q 005603 374 KFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGW 453 (688)
Q Consensus 374 ~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 453 (688)
+..|..+.+.|.. .+|.-+|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++. .++
T Consensus 289 f~eG~~lm~nG~L-----------~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nl-eaL 356 (579)
T KOG1125|consen 289 FKEGCNLMKNGDL-----------SEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNL-EAL 356 (579)
T ss_pred HHHHHHHHhcCCc-----------hHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccH-HHH
Confidence 5678888888888 9999999999999999999999999999999999999999999999999998 999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHH---------cCChHHHHHHHHHHHHHHHhhHHhhh
Q 005603 454 KLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIA---------QEQPKQAIGTYRILLAMIQAQRELHS 524 (688)
Q Consensus 454 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~~~~~~~~~ 524 (688)
..||..|...|.-.+|+..+.+-+...|+. . +...+..-.. ...+..-.+.|-.+....|.
T Consensus 357 maLAVSytNeg~q~~Al~~L~~Wi~~~p~y--~--~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~------ 426 (579)
T KOG1125|consen 357 MALAVSYTNEGLQNQALKMLDKWIRNKPKY--V--HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPT------ 426 (579)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCccc--h--hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCC------
Confidence 999999999999999999999988877631 1 0000000000 00011122233333332221
Q ss_pred hccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 005603 525 KNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSI 604 (688)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 604 (688)
..++++...||.+|...|+|++|+.||+.|+...|++...|+.||-.+....+..+|+..|++
T Consensus 427 -----------------~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~r 489 (579)
T KOG1125|consen 427 -----------------KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNR 489 (579)
T ss_pred -----------------CCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHH
Confidence 147999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCCHHHHHH
Q 005603 605 SLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPT----------NHDAWMNLGLISKMEGSLQQAAD 670 (688)
Q Consensus 605 al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~----------~~~~~~~lg~~~~~~g~~~~A~~ 670 (688)
|+++.|..+.+++++|..++.+|.|. +|.++|-.+|.+.+. +..+|-.|-.++...++.+-+..
T Consensus 490 ALqLqP~yVR~RyNlgIS~mNlG~yk--EA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 490 ALQLQPGYVRVRYNLGISCMNLGAYK--EAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHhcCCCeeeeehhhhhhhhhhhhHH--HHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 99999999999999999999999999 999999999987654 13588888888888888775544
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=99.82 E-value=1.1e-17 Score=180.96 Aligned_cols=272 Identities=12% Similarity=-0.047 Sum_probs=183.7
Q ss_pred HHHHHHHHHhc---CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHH
Q 005603 294 MDHLTYALSVT---GQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLA 370 (688)
Q Consensus 294 ~~~l~~~~~~~---g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 370 (688)
++..|...... +.+++|+..|++++..+|+++.+|..+|.++...+....
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~--------------------------- 313 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGI--------------------------- 313 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCC---------------------------
Confidence 44455444332 346899999999999999999999988888764432100
Q ss_pred HHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcH
Q 005603 371 EAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSG 450 (688)
Q Consensus 371 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 450 (688)
....+++ ++|+..++++++++|+++.++..+|.++...|++++|+..|+++++++|+++
T Consensus 314 ---------~~~~~~~-----------~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~- 372 (553)
T PRK12370 314 ---------FDKQNAM-----------IKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISA- 372 (553)
T ss_pred ---------cccchHH-----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-
Confidence 0012334 7777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccc
Q 005603 451 RGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKT 530 (688)
Q Consensus 451 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 530 (688)
.+++.+|.++...|++++|+..+++++..+| .+...+..++.++...|++++|+..+++++...|
T Consensus 373 ~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P--~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~------------- 437 (553)
T PRK12370 373 DIKYYYGWNLFMAGQLEEALQTINECLKLDP--TRAAAGITKLWITYYHTGIDDAIRLGDELRSQHL------------- 437 (553)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CChhhHHHHHHHHHhccCHHHHHHHHHHHHHhcc-------------
Confidence 7777777777777777777777777777777 5555555556666667777777777777776531
Q ss_pred cccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005603 531 KYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEP 610 (688)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 610 (688)
|..+..+..+|.++...|++++|...+.++....|....++..++..+...|+ +|...+++.++...
T Consensus 438 -----------p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~ 504 (553)
T PRK12370 438 -----------QDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQ 504 (553)
T ss_pred -----------ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhh
Confidence 12466677777777777888888877777777777777777777777776663 66665655554322
Q ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 005603 611 DYIPSIISTAEILMKLGRQSMPIARSFLMNALRL 644 (688)
Q Consensus 611 ~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~ 644 (688)
...........++.-.|+.+ .+.-+ +++.+.
T Consensus 505 ~~~~~~~~~~~~~~~~g~~~--~~~~~-~~~~~~ 535 (553)
T PRK12370 505 RIDNNPGLLPLVLVAHGEAI--AEKMW-NKFKNE 535 (553)
T ss_pred HhhcCchHHHHHHHHHhhhH--HHHHH-HHhhcc
Confidence 22211222566666666665 44443 555443
No 61
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=2.3e-19 Score=178.40 Aligned_cols=241 Identities=16% Similarity=0.122 Sum_probs=205.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHH
Q 005603 419 YYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIA 498 (688)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~ 498 (688)
+..|..+++.|+..+|.-.|+.+++.+|.+. ++|..||.+....++-..|+..++++++++| ++..++..+|..|..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~ha-eAW~~LG~~qaENE~E~~ai~AL~rcl~LdP--~NleaLmaLAVSytN 365 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHA-EAWQKLGITQAENENEQNAISALRRCLELDP--TNLEALMALAVSYTN 365 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHH-HHHHHhhhHhhhccchHHHHHHHHHHHhcCC--ccHHHHHHHHHHHhh
Confidence 6789999999999999999999999999998 9999999999999999999999999999999 899999999999999
Q ss_pred cCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC--
Q 005603 499 QEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEF-- 576 (688)
Q Consensus 499 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-- 576 (688)
.|.-.+|..++.+-+...|...-..... ..-.-.......+...+. .-.+.|..+....|
T Consensus 366 eg~q~~Al~~L~~Wi~~~p~y~~l~~a~-----~~~~~~~~~s~~~~~~l~-------------~i~~~fLeaa~~~~~~ 427 (579)
T KOG1125|consen 366 EGLQNQALKMLDKWIRNKPKYVHLVSAG-----ENEDFENTKSFLDSSHLA-------------HIQELFLEAARQLPTK 427 (579)
T ss_pred hhhHHHHHHHHHHHHHhCccchhccccC-----ccccccCCcCCCCHHHHH-------------HHHHHHHHHHHhCCCC
Confidence 9999999999999998866531111100 000000001112222222 23344555566666
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005603 577 YSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLG 656 (688)
Q Consensus 577 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg 656 (688)
.++++...||.+|...|+|++|+++|+.||...|++...|..||-.+....+.. +|+..|++|+++.|....++++||
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~--EAIsAY~rALqLqP~yVR~RyNlg 505 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSE--EAISAYNRALQLQPGYVRVRYNLG 505 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccH--HHHHHHHHHHhcCCCeeeeehhhh
Confidence 689999999999999999999999999999999999999999999999999988 999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHcccCCC
Q 005603 657 LISKMEGSLQQAADYFQAAYELKLSA 682 (688)
Q Consensus 657 ~~~~~~g~~~~A~~~~~~al~l~p~~ 682 (688)
..++.+|.|++|+.+|-.||.+.+.+
T Consensus 506 IS~mNlG~ykEA~~hlL~AL~mq~ks 531 (579)
T KOG1125|consen 506 ISCMNLGAYKEAVKHLLEALSMQRKS 531 (579)
T ss_pred hhhhhhhhHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999988763
No 62
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.81 E-value=6.2e-18 Score=167.74 Aligned_cols=237 Identities=10% Similarity=-0.027 Sum_probs=171.3
Q ss_pred hHHHHHHHHHHHHHHHcCC---C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 005603 394 VFFQKEALESLNCAFLNER---E-DPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDA 469 (688)
Q Consensus 394 ~~~~~~A~~~~~~al~~~p---~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A 469 (688)
....+.++..+.+++...| . .+..++.+|.++...|++++|+..|+++++.+|+++ .+|..+|.++...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~-~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA-DAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHCCCHHHH
Confidence 4666788888888885333 3 366788888888888999999999999999888888 8888999999999999999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHH
Q 005603 470 QSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQ 549 (688)
Q Consensus 470 ~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (688)
+..|+++++.+| ++..++..+|.++...|++++|++.+++++...|+ ++...
T Consensus 118 ~~~~~~Al~l~P--~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-------------------------~~~~~- 169 (296)
T PRK11189 118 YEAFDSVLELDP--TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-------------------------DPYRA- 169 (296)
T ss_pred HHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------------------------CHHHH-
Confidence 999999988888 77888888888888888999998888888888665 23211
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHH--HHHHHH----HHhcCCCCHHHHHHHHHHH
Q 005603 550 DLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEA--LVSFSI----SLAIEPDYIPSIISTAEIL 623 (688)
Q Consensus 550 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A--~~~~~~----al~~~p~~~~~~~~la~~~ 623 (688)
....+....+++++|+..+.++....+.. .|. .+.+....|++.++ +..+.+ ..++.|....+|+++|.++
T Consensus 170 ~~~~l~~~~~~~~~A~~~l~~~~~~~~~~--~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~ 246 (296)
T PRK11189 170 LWLYLAESKLDPKQAKENLKQRYEKLDKE--QWG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYY 246 (296)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHhhCCcc--ccH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 11123345678888888887766543322 222 34555556665443 222222 2244556677888888888
Q ss_pred HHhCCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Q 005603 624 MKLGRQSMPIARSFLMNALRLEP-TNHDAWMNLGLISKMEGS 664 (688)
Q Consensus 624 ~~~g~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~ 664 (688)
.+.|+++ +|+.+|+++++.+| +..+..+.+..+....++
T Consensus 247 ~~~g~~~--~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 247 LSLGDLD--EAAALFKLALANNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred HHCCCHH--HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence 8888888 88888888888886 556666656555544443
No 63
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=5.1e-15 Score=143.46 Aligned_cols=345 Identities=12% Similarity=0.046 Sum_probs=261.5
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccc
Q 005603 289 WDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRA---ERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQK 365 (688)
Q Consensus 289 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 365 (688)
.+...|...+..-.++|+...+..+|++++..-.++. ......|..-..+..++.|.-+|+-++ +.++.+.
T Consensus 205 P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAl------d~~pk~r 278 (677)
T KOG1915|consen 205 PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYAL------DHIPKGR 278 (677)
T ss_pred ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhcCccc
Confidence 3566788888888999999999999999887554443 344556666677788899999998887 5444443
Q ss_pred hhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005603 366 EHFLAEAYKFLGICYGNVARKSISDTERVFFQKEAL-----ESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIM 440 (688)
Q Consensus 366 ~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~-----~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 440 (688)
.. ..+...-..--+-|+... .++++ --|++.++.+|.|.++|+.+-.+-...|+.+.-.+.|++
T Consensus 279 ae---eL~k~~~~fEKqfGd~~g--------IEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yEr 347 (677)
T KOG1915|consen 279 AE---ELYKKYTAFEKQFGDKEG--------IEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYER 347 (677)
T ss_pred HH---HHHHHHHHHHHHhcchhh--------hHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 22 222211111122233200 13333 357888899999999999999999999999999999999
Q ss_pred HHhhcCCCc--------HHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhcCCC--CcHHHHHHHHHHHHHcCChHHHHHHH
Q 005603 441 YSDTVAGNS--------GRGWKLLAL-ILSADQRLKDAQSIVDFSLDEAGSM--DQLELLRLKAVLQIAQEQPKQAIGTY 509 (688)
Q Consensus 441 ~l~~~p~~~--------~~~~~~la~-~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~la~~~~~~g~~~~A~~~~ 509 (688)
++...|... +-.|.+.+. .-....+.+.+.++|+.++++-|+. ....+|...|....++.+...|.+++
T Consensus 348 AIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiL 427 (677)
T KOG1915|consen 348 AIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKIL 427 (677)
T ss_pred HHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 998877543 112333332 1245689999999999999998853 45678899999999999999999999
Q ss_pred HHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 005603 510 RILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLF 589 (688)
Q Consensus 510 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 589 (688)
-.++..+|. ..++.....+-.++++++....+|++.++..|.+..+|...|.+-
T Consensus 428 G~AIG~cPK--------------------------~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE 481 (677)
T KOG1915|consen 428 GNAIGKCPK--------------------------DKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELE 481 (677)
T ss_pred HHHhccCCc--------------------------hhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHH
Confidence 999999887 566677778888999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH--HHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----Hc
Q 005603 590 EAQSQYKEALVSFSISLAIEPDYIPSIISTAE--ILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISK-----ME 662 (688)
Q Consensus 590 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~--~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-----~~ 662 (688)
..+|+.+.|...|+-|+....-+.+-+...+. .-...|.++ .|..+|++.++..+... +|...+..-. ..
T Consensus 482 ~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~e--kaR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~ 558 (677)
T KOG1915|consen 482 TSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFE--KARALYERLLDRTQHVK-VWISFAKFEASASEGQE 558 (677)
T ss_pred HHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHH--HHHHHHHHHHHhcccch-HHHhHHHHhcccccccc
Confidence 99999999999999999876555554444443 444566666 99999999999887655 7877776654 44
Q ss_pred C-----------CHHHHHHHHHHHHccc
Q 005603 663 G-----------SLQQAADYFQAAYELK 679 (688)
Q Consensus 663 g-----------~~~~A~~~~~~al~l~ 679 (688)
| ....|...|++|....
T Consensus 559 ~~~~~~~e~~~~~~~~AR~iferAn~~~ 586 (677)
T KOG1915|consen 559 DEDLAELEITDENIKRARKIFERANTYL 586 (677)
T ss_pred ccchhhhhcchhHHHHHHHHHHHHHHHH
Confidence 4 5678888999887643
No 64
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.81 E-value=1.8e-17 Score=146.56 Aligned_cols=209 Identities=16% Similarity=0.085 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 005603 415 PEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAV 494 (688)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~ 494 (688)
..+...||.-|+..|++..|...++++++.+|++. .+|..++.+|...|+.+.|.+.|++++.+.| .+.+++.+.|.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~-~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p--~~GdVLNNYG~ 111 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY-LAHLVRAHYYQKLGENDLADESYRKALSLAP--NNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH-HHHHHHHHHHHHcCChhhHHHHHHHHHhcCC--CccchhhhhhH
Confidence 35678899999999999999999999999999998 9999999999999999999999999999999 89999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 005603 495 LQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSI 574 (688)
Q Consensus 495 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 574 (688)
.++.+|++++|...|++++.. ..-+..+.+|.++|.|..+.|+++.|..+|++++.+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~-----------------------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALAD-----------------------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhC-----------------------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence 999999999999999999874 223445778888888888888888888888888888
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHH
Q 005603 575 EFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDA 651 (688)
Q Consensus 575 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~ 651 (688)
+|+.+.....++..+...|++-.|..++++.....+-...++.....+-...|+.+ .+-++=.+..+..|...+.
T Consensus 169 dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~--~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 169 DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRA--AAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHH--HHHHHHHHHHHhCCCcHHH
Confidence 88888888888888888888888888888887777777777777777778888876 6666555556677776543
No 65
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.80 E-value=1.8e-17 Score=164.46 Aligned_cols=220 Identities=11% Similarity=-0.043 Sum_probs=182.0
Q ss_pred CCHHHHHHHHHHHHhhcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHH
Q 005603 429 RNVEAAFDYAIMYSDTVA---GNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQA 505 (688)
Q Consensus 429 g~~~~A~~~~~~~l~~~p---~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A 505 (688)
+..+.++..+.+++...| ......|+.+|.++...|++++|+..|+++++.+| +++.+++.+|.++...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P--~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP--DMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHCCCHHHH
Confidence 467888899999996443 33237799999999999999999999999999999 8999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHH
Q 005603 506 IGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTT 585 (688)
Q Consensus 506 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 585 (688)
+..|+++++++|+ +..+|.++|.++...|++++|+..++++++.+|+++.... .
T Consensus 118 ~~~~~~Al~l~P~-------------------------~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~ 171 (296)
T PRK11189 118 YEAFDSVLELDPT-------------------------YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL-W 171 (296)
T ss_pred HHHHHHHHHhCCC-------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-H
Confidence 9999999999766 6889999999999999999999999999999999874221 1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH-------HHhCCCCHHHHHHHHHH
Q 005603 586 GMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNA-------LRLEPTNHDAWMNLGLI 658 (688)
Q Consensus 586 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~a-------l~~~p~~~~~~~~lg~~ 658 (688)
..+....+++++|+..+.+++...+.. .|. .+.+....|+.. .+ ..++.+ .++.|..+++|+++|.+
T Consensus 172 ~~l~~~~~~~~~A~~~l~~~~~~~~~~--~~~-~~~~~~~lg~~~--~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~ 245 (296)
T PRK11189 172 LYLAESKLDPKQAKENLKQRYEKLDKE--QWG-WNIVEFYLGKIS--EE-TLMERLKAGATDNTELAERLCETYFYLAKY 245 (296)
T ss_pred HHHHHccCCHHHHHHHHHHHHhhCCcc--ccH-HHHHHHHccCCC--HH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 223456789999999998877553322 222 466677788886 43 233333 36677888999999999
Q ss_pred HHHcCCHHHHHHHHHHHHcccCCC
Q 005603 659 SKMEGSLQQAADYFQAAYELKLSA 682 (688)
Q Consensus 659 ~~~~g~~~~A~~~~~~al~l~p~~ 682 (688)
+...|++++|+.+|++|++++|.+
T Consensus 246 ~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 246 YLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCch
Confidence 999999999999999999999744
No 66
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.80 E-value=2.9e-17 Score=158.84 Aligned_cols=202 Identities=17% Similarity=0.108 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 005603 415 PEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAV 494 (688)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~ 494 (688)
+..++.+|..+...|++++|+..++++++.+|.+. .++..+|.++...|++++|+..+++++...| .+...+..+|.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDY-LAYLALALYYQQLGELEKAEDSFRRALTLNP--NNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHH
Confidence 55667777777777777777777777777777776 7777777777777777777777777777776 56666777777
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 005603 495 LQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSI 574 (688)
Q Consensus 495 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 574 (688)
++...|++++|+..+++++...+ .+.....+..+|.++...|++++|...+.+++..
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPL-----------------------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQI 164 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccc-----------------------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777777665311 1223445556666666666666666666666666
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 005603 575 EFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRL 644 (688)
Q Consensus 575 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~ 644 (688)
+|+++.++..+|.++...|++++|+..+++++...|.++..+..++.++...|+.+ +|..+.+.+...
T Consensus 165 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~a~~~~~~~~~~ 232 (234)
T TIGR02521 165 DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVA--AAQRYGAQLQKL 232 (234)
T ss_pred CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHH--HHHHHHHHHHhh
Confidence 66666666666666666666666666666666655555555555556666666655 555555544443
No 67
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.80 E-value=1.8e-16 Score=164.46 Aligned_cols=297 Identities=14% Similarity=0.049 Sum_probs=234.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHH-HHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHH
Q 005603 293 IMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYIL-ALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAE 371 (688)
Q Consensus 293 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 371 (688)
-.+.-|......|+++.|.+.+.+.....+ .+...+.+ +......|+++.|...+.++. ...++.. ..
T Consensus 86 ~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~---------~~~~~~~-~~ 154 (398)
T PRK10747 86 KQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAA---------ELADNDQ-LP 154 (398)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------hcCCcch-HH
Confidence 345677777889999999998888655433 45555555 556699999999999999996 3333321 12
Q ss_pred HHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHH
Q 005603 372 AYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGR 451 (688)
Q Consensus 372 ~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 451 (688)
.....+.++...|++ ++|+..++++.+.+|+++.++..++.+|...|++++|+..+.+..+..+.++ .
T Consensus 155 ~~l~~a~l~l~~g~~-----------~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~-~ 222 (398)
T PRK10747 155 VEITRVRIQLARNEN-----------HAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDE-E 222 (398)
T ss_pred HHHHHHHHHHHCCCH-----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCH-H
Confidence 233448899999999 9999999999999999999999999999999999999999999988776654 3
Q ss_pred HH--------HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhh
Q 005603 452 GW--------KLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELH 523 (688)
Q Consensus 452 ~~--------~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 523 (688)
.. ..+........+-+...+.++......| +++.+...++..+...|+.++|...++++++..+
T Consensus 223 ~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~--~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~------ 294 (398)
T PRK10747 223 HRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTR--HQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY------ 294 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHh--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC------
Confidence 22 1222222233334444555555445555 7899999999999999999999999999988522
Q ss_pred hhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 005603 524 SKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFS 603 (688)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 603 (688)
++......+.+ ..++++++++.+++.++..|+++..+..+|.++...+++++|...|+
T Consensus 295 --------------------~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le 352 (398)
T PRK10747 295 --------------------DERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFR 352 (398)
T ss_pred --------------------CHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 24433333333 44999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Q 005603 604 ISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLE 645 (688)
Q Consensus 604 ~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~ 645 (688)
++++..|++. .+..++.++.+.|+.+ +|..+|++++.+.
T Consensus 353 ~al~~~P~~~-~~~~La~~~~~~g~~~--~A~~~~~~~l~~~ 391 (398)
T PRK10747 353 AALKQRPDAY-DYAWLADALDRLHKPE--EAAAMRRDGLMLT 391 (398)
T ss_pred HHHhcCCCHH-HHHHHHHHHHHcCCHH--HHHHHHHHHHhhh
Confidence 9999999865 4668999999999998 9999999998753
No 68
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.80 E-value=2.5e-17 Score=159.32 Aligned_cols=201 Identities=17% Similarity=0.109 Sum_probs=187.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccc
Q 005603 451 RGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKT 530 (688)
Q Consensus 451 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 530 (688)
..+..+|.++...|++++|+..++++++..| .+..++..+|.++...|++++|++.+++++...|.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------------ 97 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDP--DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN------------ 97 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------
Confidence 7899999999999999999999999999998 78899999999999999999999999999998655
Q ss_pred cccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005603 531 KYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIE--FYSPGSWHTTGMLFEAQSQYKEALVSFSISLAI 608 (688)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 608 (688)
+..++..+|.++...|++++|+..+++++... +.....+..+|.++...|++++|...+.++++.
T Consensus 98 -------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (234)
T TIGR02521 98 -------------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI 164 (234)
T ss_pred -------------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57889999999999999999999999999854 456778999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccC
Q 005603 609 EPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKL 680 (688)
Q Consensus 609 ~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 680 (688)
.|+++.++..+|.++...|+++ +|...+++++...|.++..+..++.++...|+.++|..+.+.+....|
T Consensus 165 ~~~~~~~~~~la~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 165 DPQRPESLLELAELYYLRGQYK--DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred CcCChHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 9999999999999999999998 999999999999999999999999999999999999999888776644
No 69
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.79 E-value=8.3e-16 Score=142.22 Aligned_cols=280 Identities=13% Similarity=0.016 Sum_probs=241.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHH
Q 005603 295 DHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYK 374 (688)
Q Consensus 295 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 374 (688)
+..|.-+..+.+.++|++.|-.+++.+|...++...||..+.+.|..+.|+.+-+..+ + .+.-+..-+..+..
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~------~-spdlT~~qr~lAl~ 111 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLL------E-SPDLTFEQRLLALQ 111 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHh------c-CCCCchHHHHHHHH
Confidence 4467777888999999999999999999999999999999999999999999998886 2 34444455577888
Q ss_pred HHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCc----H
Q 005603 375 FLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNS----G 450 (688)
Q Consensus 375 ~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~ 450 (688)
.||.-|+..|-+ +.|...|........--..++-.|..+|....+|++|++..++..++.+... +
T Consensus 112 qL~~Dym~aGl~-----------DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA 180 (389)
T COG2956 112 QLGRDYMAAGLL-----------DRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA 180 (389)
T ss_pred HHHHHHHHhhhh-----------hHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH
Confidence 999999999988 9999999999876666678999999999999999999999999999987753 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccc
Q 005603 451 RGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKT 530 (688)
Q Consensus 451 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 530 (688)
..+..++..+....+.+.|...+.++++.+| ....+-..+|.+....|+++.|++.++.+++.+|..
T Consensus 181 qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~--~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y----------- 247 (389)
T COG2956 181 QFYCELAQQALASSDVDRARELLKKALQADK--KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY----------- 247 (389)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCc--cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH-----------
Confidence 5667788888889999999999999999999 788899999999999999999999999999998874
Q ss_pred cccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005603 531 KYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEP 610 (688)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 610 (688)
.+++...|..+|...|+.++.+..+.++.+..+. +.+-..++..-....-.+.|...+.+-+...|
T Consensus 248 -------------l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~P 313 (389)
T COG2956 248 -------------LSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKP 313 (389)
T ss_pred -------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCC
Confidence 5788889999999999999999999999998875 44556667777777778889999999999888
Q ss_pred CCHHHHHHH
Q 005603 611 DYIPSIIST 619 (688)
Q Consensus 611 ~~~~~~~~l 619 (688)
+--..+..+
T Consensus 314 t~~gf~rl~ 322 (389)
T COG2956 314 TMRGFHRLM 322 (389)
T ss_pred cHHHHHHHH
Confidence 754444333
No 70
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.79 E-value=3.3e-17 Score=144.85 Aligned_cols=205 Identities=16% Similarity=0.106 Sum_probs=192.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccc
Q 005603 451 RGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKT 530 (688)
Q Consensus 451 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 530 (688)
.+...+|.-|+..|++..|...++++++.+| ....+|..+|.+|...|+.+.|.+.|++++.+.|+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DP--s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~------------ 101 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDP--SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN------------ 101 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC------------
Confidence 6788999999999999999999999999999 89999999999999999999999999999999776
Q ss_pred cccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005603 531 KYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSI--EFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAI 608 (688)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 608 (688)
+.+++++.|..++.+|++++|...|++++.. .+..+.+|.++|.|..+.|+++.|...|+++++.
T Consensus 102 -------------~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 102 -------------NGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred -------------ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence 7999999999999999999999999999984 3466789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccCCCCC
Q 005603 609 EPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKLSAPV 684 (688)
Q Consensus 609 ~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 684 (688)
+|+.+.....++..++..|++. .|..++++.....+-..+.+.....+-...|+-+.|-++=.+.....|.++.
T Consensus 169 dp~~~~~~l~~a~~~~~~~~y~--~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 169 DPQFPPALLELARLHYKAGDYA--PARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred CcCCChHHHHHHHHHHhcccch--HHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 9999999999999999999999 9999999999988888888888888889999999999998888888998764
No 71
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.78 E-value=7.5e-16 Score=155.15 Aligned_cols=341 Identities=19% Similarity=0.167 Sum_probs=213.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHH
Q 005603 292 EIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAE 371 (688)
Q Consensus 292 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 371 (688)
..++..+.-.+..++|...++..+.+++..|..++.....|..+...|+-++|....+..+ ..++.+ ..
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~gl---------r~d~~S--~v 76 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGL---------RNDLKS--HV 76 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHh---------ccCccc--ch
Confidence 3444455555566777777777777777777777777777777777777777777777665 222222 46
Q ss_pred HHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHH
Q 005603 372 AYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGR 451 (688)
Q Consensus 372 ~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 451 (688)
+|+.+|.++....++ ++|+++|..|+.++|+|..+|..++.+..+.|+++-....-.+.++..|... .
T Consensus 77 CwHv~gl~~R~dK~Y-----------~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~r-a 144 (700)
T KOG1156|consen 77 CWHVLGLLQRSDKKY-----------DEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQR-A 144 (700)
T ss_pred hHHHHHHHHhhhhhH-----------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhH-H
Confidence 777777777777777 7777777777777777777777777777777777777777777777777776 7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhc---CCC---CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhh
Q 005603 452 GWKLLALILSADQRLKDAQSIVDFSLDEA---GSM---DQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSK 525 (688)
Q Consensus 452 ~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 525 (688)
.|...+..+...|++..|..+++...... |+. ...........+....|.+++|.+.+..--...-+
T Consensus 145 ~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D------- 217 (700)
T KOG1156|consen 145 SWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD------- 217 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH-------
Confidence 77777777777777777777766655433 211 12233344444555556655555544332221111
Q ss_pred ccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHH------
Q 005603 526 NFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEAL------ 599 (688)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~------ 599 (688)
........+.++..++++++|...|...+..+|++...+..+-.++..-.+.-+++
T Consensus 218 ------------------kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ 279 (700)
T KOG1156|consen 218 ------------------KLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAI 279 (700)
T ss_pred ------------------HHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 23333445566666666666666666666666665544333322221000000000
Q ss_pred ----------------------------------------------------------------HHHHHHHhcC------
Q 005603 600 ----------------------------------------------------------------VSFSISLAIE------ 609 (688)
Q Consensus 600 ----------------------------------------------------------------~~~~~al~~~------ 609 (688)
..|...+.-.
T Consensus 280 ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 280 LSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFL 359 (700)
T ss_pred HhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcc
Confidence 0011111100
Q ss_pred ------CCCH--HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccCC
Q 005603 610 ------PDYI--PSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKLS 681 (688)
Q Consensus 610 ------p~~~--~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 681 (688)
|..+ ..++.++.-+-..|+++ .|..+++.++...|+-++.+...|.++...|++++|...+..+.+++-.
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~g~~~--~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a 437 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYE--VALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA 437 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHcccHH--HHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch
Confidence 1111 23456777788888888 9999999999999998898889999999999999999999988887654
Q ss_pred C
Q 005603 682 A 682 (688)
Q Consensus 682 ~ 682 (688)
|
T Consensus 438 D 438 (700)
T KOG1156|consen 438 D 438 (700)
T ss_pred h
Confidence 3
No 72
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.78 E-value=3.6e-16 Score=144.55 Aligned_cols=271 Identities=16% Similarity=0.118 Sum_probs=233.6
Q ss_pred HHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCc----
Q 005603 374 KFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNS---- 449 (688)
Q Consensus 374 ~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---- 449 (688)
+..|.-+....+. ++|+..|-..++.+|...++.+.||.++...|..+.|+...+..++. |+..
T Consensus 39 Yv~GlNfLLs~Q~-----------dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr 106 (389)
T COG2956 39 YVKGLNFLLSNQP-----------DKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQR 106 (389)
T ss_pred HHhHHHHHhhcCc-----------chHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHH
Confidence 3445555556666 99999999999999999999999999999999999999998877654 4432
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhcccc
Q 005603 450 GRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHK 529 (688)
Q Consensus 450 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 529 (688)
..+...+|.-|...|-++.|+.+|....+... ....++..+..+|....+|++|++.-++..++.+.
T Consensus 107 ~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e--fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q----------- 173 (389)
T COG2956 107 LLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE--FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ----------- 173 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh--hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc-----------
Confidence 25778899999999999999999999998765 66788999999999999999999999999998665
Q ss_pred ccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005603 530 TKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIE 609 (688)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 609 (688)
..+..-+..+..++..+....+.+.|...+.++++.+|.+..+-..+|.++...|+|+.|++.++.+++.+
T Consensus 174 ---------~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn 244 (389)
T COG2956 174 ---------TYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQN 244 (389)
T ss_pred ---------cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhC
Confidence 22333578899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccCC
Q 005603 610 PDY-IPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKLS 681 (688)
Q Consensus 610 p~~-~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 681 (688)
|+. +.+...+..+|.++|+.. +.+..+.++.+..++. .+-..++..-....-.+.|..+..+-+...|+
T Consensus 245 ~~yl~evl~~L~~~Y~~lg~~~--~~~~fL~~~~~~~~g~-~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt 314 (389)
T COG2956 245 PEYLSEVLEMLYECYAQLGKPA--EGLNFLRRAMETNTGA-DAELMLADLIELQEGIDAAQAYLTRQLRRKPT 314 (389)
T ss_pred hHHHHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHccCCc-cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc
Confidence 986 467888999999999998 9999999999988764 45556666666666678888888877777775
No 73
>PLN02789 farnesyltranstransferase
Probab=99.77 E-value=9.6e-17 Score=158.29 Aligned_cols=221 Identities=12% Similarity=0.085 Sum_probs=192.9
Q ss_pred HHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCCh--
Q 005603 426 AVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQ-RLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQP-- 502 (688)
Q Consensus 426 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~-- 502 (688)
...+++++|+..+.++++++|.+. .+|...+.++...| ++++++..+++++..+| .+..+|..++.++...|+.
T Consensus 48 ~~~e~serAL~lt~~aI~lnP~~y-taW~~R~~iL~~L~~~l~eeL~~~~~~i~~np--knyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNPGNY-TVWHFRRLCLEALDADLEEELDFAEDVAEDNP--KNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCchhH-HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC--cchHHhHHHHHHHHHcCchhh
Confidence 345678899999999999999998 99999999999998 68999999999999999 7888999999999888874
Q ss_pred HHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHH
Q 005603 503 KQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSW 582 (688)
Q Consensus 503 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 582 (688)
++++..+.+++..+|+ +..+|...+.++...|++++|+.++.++++.+|.+..+|
T Consensus 125 ~~el~~~~kal~~dpk-------------------------Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW 179 (320)
T PLN02789 125 NKELEFTRKILSLDAK-------------------------NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAW 179 (320)
T ss_pred HHHHHHHHHHHHhCcc-------------------------cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHH
Confidence 6789999999999776 799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc---CCH----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHhCCCCHHH
Q 005603 583 HTTGMLFEAQ---SQY----KEALVSFSISLAIEPDYIPSIISTAEILMK----LGRQSMPIARSFLMNALRLEPTNHDA 651 (688)
Q Consensus 583 ~~lg~~~~~~---g~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~~~A~~~~~~al~~~p~~~~~ 651 (688)
+.++.+.... |.+ ++++.+..+++..+|++..+|..++.++.. +++.. +|++.+.+++...|.++.+
T Consensus 180 ~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~--~~~~~~~~~~~~~~~s~~a 257 (320)
T PLN02789 180 NQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDP--EVSSVCLEVLSKDSNHVFA 257 (320)
T ss_pred HHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccch--hHHHHHHHhhcccCCcHHH
Confidence 9999988776 333 578888889999999999999999999988 34445 7999999999999999999
Q ss_pred HHHHHHHHHHcC------------------CHHHHHHHHHHHH
Q 005603 652 WMNLGLISKMEG------------------SLQQAADYFQAAY 676 (688)
Q Consensus 652 ~~~lg~~~~~~g------------------~~~~A~~~~~~al 676 (688)
+..|+.+|.... ..++|...++..-
T Consensus 258 l~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 258 LSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 999999997632 2366777777663
No 74
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=8.9e-17 Score=153.28 Aligned_cols=339 Identities=15% Similarity=0.077 Sum_probs=259.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHH
Q 005603 292 EIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAE 371 (688)
Q Consensus 292 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 371 (688)
.-....+..+.+...|.+|+..+..++...|++...|...+.+++..|+|++|....++.+ ...+.. ..
T Consensus 50 e~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~---------r~kd~~--~k 118 (486)
T KOG0550|consen 50 EEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSV---------RLKDGF--SK 118 (486)
T ss_pred HHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhhe---------ecCCCc--cc
Confidence 3445677888888999999999999999999999999999999999999999999888886 233333 35
Q ss_pred HHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHH---------------HHHHcC---CCCHHHHHHHHHHHHHcCCHHH
Q 005603 372 AYKFLGICYGNVARKSISDTERVFFQKEALESLN---------------CAFLNE---REDPEMMYYLGLEHAVQRNVEA 433 (688)
Q Consensus 372 ~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~---------------~al~~~---p~~~~~~~~la~~~~~~g~~~~ 433 (688)
.+...+.|+...+.. .+|...|+ +.+... |.-..+...-+.++...|++++
T Consensus 119 ~~~r~~~c~~a~~~~-----------i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~ 187 (486)
T KOG0550|consen 119 GQLREGQCHLALSDL-----------IEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDE 187 (486)
T ss_pred cccchhhhhhhhHHH-----------HHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchh
Confidence 566666666666665 33333332 222111 2223455667889999999999
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC----------CcHHHHHHHHHHHHHcCChH
Q 005603 434 AFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSM----------DQLELLRLKAVLQIAQEQPK 503 (688)
Q Consensus 434 A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----------~~~~~~~~la~~~~~~g~~~ 503 (688)
|+..--..+++++.+. .+++..|.++...++.+.|+.+|++++..+|.. .....+...|.-.++.|++.
T Consensus 188 a~~ea~~ilkld~~n~-~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~ 266 (486)
T KOG0550|consen 188 AQSEAIDILKLDATNA-EALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYR 266 (486)
T ss_pred HHHHHHHHHhcccchh-HHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchh
Confidence 9999999999999998 999999999999999999999999999998843 12345667788889999999
Q ss_pred HHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHH
Q 005603 504 QAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWH 583 (688)
Q Consensus 504 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 583 (688)
+|.+.|..+|.++|++ ...++..|.+++.+..++|+..+|+...+.+++++|....++.
T Consensus 267 ~A~E~Yteal~idP~n---------------------~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall 325 (486)
T KOG0550|consen 267 KAYECYTEALNIDPSN---------------------KKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALL 325 (486)
T ss_pred HHHHHHHHhhcCCccc---------------------cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHH
Confidence 9999999999999985 2336888999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhCCCC-------------hHHHHHHHHHHHHhCCCC
Q 005603 584 TTGMLFEAQSQYKEALVSFSISLAIEPD--YIPSIISTAEILMKLGRQS-------------MPIARSFLMNALRLEPTN 648 (688)
Q Consensus 584 ~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~-------------~~~A~~~~~~al~~~p~~ 648 (688)
..|.++..+++|++|++.|+++++...+ .-..+......+-+..+.+ -+.-..+-..+|...|+-
T Consensus 326 ~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~ 405 (486)
T KOG0550|consen 326 RRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDK 405 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCc
Confidence 9999999999999999999999987655 3333333333333222222 001112223355555542
Q ss_pred -------HH-HHHHHHHHHHHcCCHHHHHHHHHH
Q 005603 649 -------HD-AWMNLGLISKMEGSLQQAADYFQA 674 (688)
Q Consensus 649 -------~~-~~~~lg~~~~~~g~~~~A~~~~~~ 674 (688)
.+ -....|..|...+++.++.++..-
T Consensus 406 ~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg 439 (486)
T KOG0550|consen 406 NAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSG 439 (486)
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence 12 245688888888888888876653
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.77 E-value=6.3e-16 Score=158.84 Aligned_cols=248 Identities=17% Similarity=0.123 Sum_probs=205.9
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 005603 410 NEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDT--------VAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAG 481 (688)
Q Consensus 410 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 481 (688)
.+|.-..+...++..|..+|++++|+..++++++. .|.-. .....+|.+|..++++.+|+.+|++++.+..
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va-~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVA-SMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHH-HHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 45666777788999999999999999999999987 34332 4455699999999999999999999996431
Q ss_pred ------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHH
Q 005603 482 ------SMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIY 555 (688)
Q Consensus 482 ------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 555 (688)
.+..+.++.++|.+|...|++++|..++++++.+.... . ....+.-...+..++.++
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~---~--------------~~~~~~v~~~l~~~~~~~ 335 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL---L--------------GASHPEVAAQLSELAAIL 335 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh---h--------------ccChHHHHHHHHHHHHHH
Confidence 11557789999999999999999999999999986551 1 123445677889999999
Q ss_pred HHcCChhHHHHHHHHHHhcCC--------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHH
Q 005603 556 MKLGSLPDAEICTEKAKSIEF--------YSPGSWHTTGMLFEAQSQYKEALVSFSISLAIE--------PDYIPSIIST 619 (688)
Q Consensus 556 ~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l 619 (688)
..++++++|..++++++++.- ..+..+.++|.+|..+|++++|.+.|++++.+. +.....+..+
T Consensus 336 ~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~l 415 (508)
T KOG1840|consen 336 QSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQL 415 (508)
T ss_pred HHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHH
Confidence 999999999999999988632 335678999999999999999999999999863 3345678899
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 005603 620 AEILMKLGRQSMPIARSFLMNALRL-------EPTNHDAWMNLGLISKMEGSLQQAADYFQAAYE 677 (688)
Q Consensus 620 a~~~~~~g~~~~~~A~~~~~~al~~-------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 677 (688)
|..+.+.+++. +|...|.++..+ .|+....+.+|+.+|..+|++++|+++.++++.
T Consensus 416 a~~~~~~k~~~--~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 416 AEAYEELKKYE--EAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHhcccc--hHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 99999999998 899999988775 244456789999999999999999999999984
No 76
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2.3e-17 Score=157.20 Aligned_cols=272 Identities=15% Similarity=0.027 Sum_probs=237.7
Q ss_pred HHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcH
Q 005603 371 EAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSG 450 (688)
Q Consensus 371 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 450 (688)
.-....|..+....++ .+|+..|..++++.|++...|...+..+...+++++|....++.+++.|+.+
T Consensus 50 e~~k~~gn~~yk~k~Y-----------~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~- 117 (486)
T KOG0550|consen 50 EEAKEEGNAFYKQKTY-----------GNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFS- 117 (486)
T ss_pred HHHHhhcchHHHHhhH-----------HHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCcc-
Confidence 3445566677777888 9999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH------------hhcCC----CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005603 451 RGWKLLALILSADQRLKDAQSIVDFSL------------DEAGS----MDQLELLRLKAVLQIAQEQPKQAIGTYRILLA 514 (688)
Q Consensus 451 ~~~~~la~~~~~~~~~~~A~~~~~~al------------~~~p~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 514 (688)
......+.++...++..+|...++..- ...|. +....+....+.++...|++++|...--..++
T Consensus 118 k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilk 197 (486)
T KOG0550|consen 118 KGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILK 197 (486)
T ss_pred ccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHh
Confidence 888899999988888888886665321 01110 02345567889999999999999999999988
Q ss_pred HHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChh------------HH
Q 005603 515 MIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPG------------SW 582 (688)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------------~~ 582 (688)
+++. +.++++..|.++...++.+.|+..|++++.++|+... .|
T Consensus 198 ld~~-------------------------n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 198 LDAT-------------------------NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred cccc-------------------------hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHH
Confidence 8665 7899999999999999999999999999999997643 36
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005603 583 HTTGMLFEAQSQYKEALVSFSISLAIEPDY----IPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLI 658 (688)
Q Consensus 583 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 658 (688)
..-|.-..+.|++.+|.++|..+|.++|++ +..|.+++.+..++|+.. +|+...+.++.++|....++...|.+
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~--eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLR--EAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCch--hhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 677888899999999999999999999986 456889999999999999 99999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHcccCC
Q 005603 659 SKMEGSLQQAADYFQAAYELKLS 681 (688)
Q Consensus 659 ~~~~g~~~~A~~~~~~al~l~p~ 681 (688)
+..++++++|++.|++|+++..+
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999998766
No 77
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.76 E-value=2.8e-14 Score=144.04 Aligned_cols=427 Identities=15% Similarity=0.038 Sum_probs=250.9
Q ss_pred HHHHhhhhHHhhCChHHHHHHHHHHHHHHHhcCCCCCCCCCCccccHHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHhhC
Q 005603 143 AILLKAKSLEELGHCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKALELLPHLWIKAGLLEEAIIAYRRALV 222 (688)
Q Consensus 143 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~ 222 (688)
++|.++.=.+..++|....+.++.+|.. .|+. + ..+.+.|..+...|+.++|...-+.++.
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k--------~~eH-------g----eslAmkGL~L~~lg~~~ea~~~vr~glr 69 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKK--------FPEH-------G----ESLAMKGLTLNCLGKKEEAYELVRLGLR 69 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHh--------CCcc-------c----hhHHhccchhhcccchHHHHHHHHHHhc
Confidence 4677777667789999999999988873 2321 0 1344567778889999999888888877
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCccCCCCCccccCCCccCCCchHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 005603 223 KPWNLDPKKVASVQRDLAVTLLYGGVEARLPPELKVWGPIAPKDNVEEAILLLLILMEKVASKEMEWDAEIMDHLTYALS 302 (688)
Q Consensus 223 ~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~eea~~~l~~~~~~~~l~~~p~~~~~~~~l~~~~~ 302 (688)
.+ +.....|+.+|.++.
T Consensus 70 ~d---------------------------------------------------------------~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 70 ND---------------------------------------------------------------LKSHVCWHVLGLLQR 86 (700)
T ss_pred cC---------------------------------------------------------------cccchhHHHHHHHHh
Confidence 62 123445555555555
Q ss_pred hcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHh
Q 005603 303 VTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGN 382 (688)
Q Consensus 303 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~ 382 (688)
...+|++|+++|..++...|+|..+|..++....++|+++.....-.+.+ ...+.. -..|...+..+..
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LL---------ql~~~~--ra~w~~~Avs~~L 155 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLL---------QLRPSQ--RASWIGFAVAQHL 155 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHH---------Hhhhhh--HHHHHHHHHHHHH
Confidence 55566666666666666666666666666666666665555554444443 222222 3444555555555
Q ss_pred hhhhccchHHhhHHHHHHHHHHHHHHHcC---CCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHH
Q 005603 383 VARKSISDTERVFFQKEALESLNCAFLNE---RED-----PEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWK 454 (688)
Q Consensus 383 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 454 (688)
.|.+ ..|...++...+.. |.. ............+.|.+++|++.+...-...-+.. ....
T Consensus 156 ~g~y-----------~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkl-a~~e 223 (700)
T KOG1156|consen 156 LGEY-----------KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKL-AFEE 223 (700)
T ss_pred HHHH-----------HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHH-HHhh
Confidence 5555 55555555444332 211 22333344444555555555544433322211221 3334
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHH-HHHHHHHHHHHhhHH------------
Q 005603 455 LLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAI-GTYRILLAMIQAQRE------------ 521 (688)
Q Consensus 455 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~------------ 521 (688)
..+.++...+++++|..++...+..+| ++...+..+-.++..-.+--+++ ..|...-+..|....
T Consensus 224 ~ka~l~~kl~~lEeA~~~y~~Ll~rnP--dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~e 301 (700)
T KOG1156|consen 224 TKADLLMKLGQLEEAVKVYRRLLERNP--DNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGE 301 (700)
T ss_pred hHHHHHHHHhhHHhHHHHHHHHHhhCc--hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcc
Confidence 445555555556666666655555555 44444444444433111111122 222222221111100
Q ss_pred -----------------------hhhhccc-------------------ccccccc--ccccCCcc--hHHHHHHHHHHH
Q 005603 522 -----------------------LHSKNFH-------------------KTKYITS--EAPSVKNL--EIATWQDLATIY 555 (688)
Q Consensus 522 -----------------------~~~~~~~-------------------~~~~~~~--~~~~~~~~--~~~~~~~la~~~ 555 (688)
.+.+... .+...+. ..-...|. -...++.++.-+
T Consensus 302 el~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~ 381 (700)
T KOG1156|consen 302 ELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHY 381 (700)
T ss_pred hhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHH
Confidence 0000000 0000000 00011122 345567788999
Q ss_pred HHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHH
Q 005603 556 MKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIAR 635 (688)
Q Consensus 556 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~ 635 (688)
-..|+++.|..+++.|+...|..++.+...|.++...|+.++|..++..+-+++..+.-.-...|.-..+.++.+ +|.
T Consensus 382 D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~--eA~ 459 (700)
T KOG1156|consen 382 DKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIE--EAE 459 (700)
T ss_pred HHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccH--HHH
Confidence 999999999999999999999999999999999999999999999999999988766655556788888888888 998
Q ss_pred HHHHHHHHhCCC-------CHHHHHH--HHHHHHHcCCHHHHHHHHHHHHcc
Q 005603 636 SFLMNALRLEPT-------NHDAWMN--LGLISKMEGSLQQAADYFQAAYEL 678 (688)
Q Consensus 636 ~~~~~al~~~p~-------~~~~~~~--lg~~~~~~g~~~~A~~~~~~al~l 678 (688)
+.+.+.-+..-+ -.-.|+. -|..|.++|++..|+.-|..+-..
T Consensus 460 ~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~ 511 (700)
T KOG1156|consen 460 EVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKH 511 (700)
T ss_pred HHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHH
Confidence 888776654321 1124665 488899999999998877665543
No 78
>PLN02789 farnesyltranstransferase
Probab=99.75 E-value=1e-15 Score=151.09 Aligned_cols=230 Identities=11% Similarity=0.054 Sum_probs=201.1
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCH--HHHHHHHH
Q 005603 398 KEALESLNCAFLNEREDPEMMYYLGLEHAVQR-NVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRL--KDAQSIVD 474 (688)
Q Consensus 398 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~--~~A~~~~~ 474 (688)
++|+..+.+++.++|.+..+|...+.++...| ++++++..+.++++.+|.+. .+|...+.++...|+. ++++.+++
T Consensus 54 erAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny-qaW~~R~~~l~~l~~~~~~~el~~~~ 132 (320)
T PLN02789 54 PRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY-QIWHHRRWLAEKLGPDAANKELEFTR 132 (320)
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch-HHhHHHHHHHHHcCchhhHHHHHHHH
Confidence 99999999999999999999999999999998 68999999999999999999 9999999999988874 78899999
Q ss_pred HHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHH
Q 005603 475 FSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATI 554 (688)
Q Consensus 475 ~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 554 (688)
++++.+| .+..+|..++.++...|+++++++.+.++++.+|. +..+|...+.+
T Consensus 133 kal~~dp--kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-------------------------N~sAW~~R~~v 185 (320)
T PLN02789 133 KILSLDA--KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-------------------------NNSAWNQRYFV 185 (320)
T ss_pred HHHHhCc--ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-------------------------chhHHHHHHHH
Confidence 9999999 89999999999999999999999999999999766 68899999988
Q ss_pred HHHc---CCh----hHHHHHHHHHHhcCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005603 555 YMKL---GSL----PDAEICTEKAKSIEFYSPGSWHTTGMLFEA----QSQYKEALVSFSISLAIEPDYIPSIISTAEIL 623 (688)
Q Consensus 555 ~~~~---g~~----~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 623 (688)
.... |.+ ++++.+..+++..+|++..+|+.++.++.. .++..+|+..+.+++...|.++.++..++.++
T Consensus 186 l~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~ 265 (320)
T PLN02789 186 ITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLL 265 (320)
T ss_pred HHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHH
Confidence 8776 333 478888899999999999999999999988 45667899999999999999999999999999
Q ss_pred HHhCCC----------------ChHHHHHHHHHHHHhCCCCHHHHHHH
Q 005603 624 MKLGRQ----------------SMPIARSFLMNALRLEPTNHDAWMNL 655 (688)
Q Consensus 624 ~~~g~~----------------~~~~A~~~~~~al~~~p~~~~~~~~l 655 (688)
...... ...+|...++..-+.+|-...-|...
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~~~ 313 (320)
T PLN02789 266 CEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYWAWR 313 (320)
T ss_pred HhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence 864311 11268888877766677655555543
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.74 E-value=6.6e-15 Score=151.39 Aligned_cols=314 Identities=15% Similarity=0.062 Sum_probs=230.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHH
Q 005603 293 IMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEA 372 (688)
Q Consensus 293 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 372 (688)
-+......+...+.+++|....++.....- ...++......-+.+........... ......-...|. ...+
T Consensus 130 ~~hl~~~~~~~~~~l~ea~~~~e~~~~~~~-----~d~la~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~P~--~~~~ 201 (508)
T KOG1840|consen 130 KLHLLAAIQALLLQLDEAEQGQEQAAVTPV-----KDSLADLGGEKQEEDSSIEGTLKGLD-IQAKGLGDEDPE--RLRT 201 (508)
T ss_pred HHHHHHHHHHHHHHhhhhhcccccccccch-----hHHHHhhccccccccccchhhHHHHH-HHHHhcccCCch--HHHH
Confidence 355555666677777887777776533211 11133322222222222222222110 000010122232 3566
Q ss_pred HHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 005603 373 YKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLN--------EREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDT 444 (688)
Q Consensus 373 ~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 444 (688)
...++..|..+|++ ++|+..++.++.. .|.-......+|..|..++++++|+..|++++.+
T Consensus 202 ~~~La~~y~~~g~~-----------e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i 270 (508)
T KOG1840|consen 202 LRNLAEMYAVQGRL-----------EKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI 270 (508)
T ss_pred HHHHHHHHHHhccH-----------HHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 67799999999999 9999999999977 4444555566999999999999999999999976
Q ss_pred c-----CCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC------CCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005603 445 V-----AGNS--GRGWKLLALILSADQRLKDAQSIVDFSLDEAGS------MDQLELLRLKAVLQIAQEQPKQAIGTYRI 511 (688)
Q Consensus 445 ~-----p~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 511 (688)
. ++++ +.++.+||.+|...|++++|..++++++++..+ +.-...+..++.++...+++++|+.++++
T Consensus 271 ~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~ 350 (508)
T KOG1840|consen 271 REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQK 350 (508)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 2 3332 367889999999999999999999999976432 13456678899999999999999999999
Q ss_pred HHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC--------CChhHHH
Q 005603 512 LLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEF--------YSPGSWH 583 (688)
Q Consensus 512 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~ 583 (688)
++++..+. . -..++..+..+.++|.+|..+|++++|.+++++++.+.. .....+.
T Consensus 351 al~i~~~~---~--------------g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~ 413 (508)
T KOG1840|consen 351 ALKIYLDA---P--------------GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLN 413 (508)
T ss_pred HHHHHHhh---c--------------cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHH
Confidence 99985531 1 122445688999999999999999999999999998752 3355688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 005603 584 TTGMLFEAQSQYKEALVSFSISLAI-------EPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRL 644 (688)
Q Consensus 584 ~lg~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~ 644 (688)
.+|..+.+.+++.+|...|.+++.+ +|+....+.+|+.+|..+|+++ +|+++.++++..
T Consensus 414 ~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e--~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 414 QLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYE--AAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHH--HHHHHHHHHHHH
Confidence 9999999999999999999988875 3455678999999999999999 999999998853
No 80
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.71 E-value=2.1e-14 Score=148.49 Aligned_cols=313 Identities=13% Similarity=0.003 Sum_probs=203.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHH
Q 005603 321 IYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEA 400 (688)
Q Consensus 321 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A 400 (688)
+|+.+..+..+|.++...|+.+.+...+.+.. ...+.+.+. ....+..+.++...|++ ++|
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~--~e~~~~~a~~~~~~g~~-----------~~A 62 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAA------QALAARATE--RERAHVEALSAWIAGDL-----------PKA 62 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHH------HHhccCCCH--HHHHHHHHHHHHHcCCH-----------HHH
Confidence 67778888888888888888888777776664 222222222 45566777788888888 888
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH----HHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005603 401 LESLNCAFLNEREDPEMMYYLGLEHAVQRNVE----AAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFS 476 (688)
Q Consensus 401 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~----~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 476 (688)
...+++++..+|.+..++.. +..+...|++. .+...+.......|... ..+..+|.++...|++++|+..++++
T Consensus 63 ~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~a~~~~~~G~~~~A~~~~~~a 140 (355)
T cd05804 63 LALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYW-YLLGMLAFGLEEAGQYDRAEEAARRA 140 (355)
T ss_pred HHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888888888766664 44444444433 33333333223445554 56667788888888888888888888
Q ss_pred HhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHH
Q 005603 477 LDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYM 556 (688)
Q Consensus 477 l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 556 (688)
++..| ++..++..+|.++...|++++|+..+++++...|.. .......|..+|.++.
T Consensus 141 l~~~p--~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~---------------------~~~~~~~~~~la~~~~ 197 (355)
T cd05804 141 LELNP--DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS---------------------SMLRGHNWWHLALFYL 197 (355)
T ss_pred HhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC---------------------cchhHHHHHHHHHHHH
Confidence 88888 677788888888888888888888888888775431 0112345677888888
Q ss_pred HcCChhHHHHHHHHHHhcCCCCh--hHHH---HHHHHHHHcCCHHHHHHH--H-HHHHhcCCC--CHHHHHHHHHHHHHh
Q 005603 557 KLGSLPDAEICTEKAKSIEFYSP--GSWH---TTGMLFEAQSQYKEALVS--F-SISLAIEPD--YIPSIISTAEILMKL 626 (688)
Q Consensus 557 ~~g~~~~A~~~~~~al~~~p~~~--~~~~---~lg~~~~~~g~~~~A~~~--~-~~al~~~p~--~~~~~~~la~~~~~~ 626 (688)
..|++++|+..|++++...|... .... .+...+...|....+..+ . .......|. ........+.++...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 88888888888888876655211 1111 112222333332222222 1 111111121 122233567777778
Q ss_pred CCCChHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccc
Q 005603 627 GRQSMPIARSFLMNALRLEPT---------NHDAWMNLGLISKMEGSLQQAADYFQAAYELK 679 (688)
Q Consensus 627 g~~~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 679 (688)
|+.+ +|...++........ ...+....+.++...|++++|.+.+..++.+-
T Consensus 278 ~~~~--~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 278 GDKD--ALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CCHH--HHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8877 888888776553321 23456678888899999999999999988754
No 81
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=2.8e-13 Score=135.45 Aligned_cols=436 Identities=16% Similarity=0.090 Sum_probs=257.9
Q ss_pred CCccCCCcchhhhhhhhhhhhcccHHHHHHHhh--hHhhhcCCHHHHHhhhhcCCCCccccchhhhhhhhcccccccCCC
Q 005603 42 WDSKVDDIQVDEAESTLKEALSLNYEEARALLG--RLEYQRGNYDAALQVFQGIDIVSLTPRMTRAVVERTRPLRKHRSK 119 (688)
Q Consensus 42 ~~~~~~~g~~~~A~~~l~~~l~~~~~~a~~llg--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (688)
...+..+|++++|.......+++.|.+..++-. -+..+.++|++|+..-+.-. +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~---------------------~--- 74 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNG---------------------A--- 74 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc---------------------h---
Confidence 346778999999999999999997766555543 34568999999995443221 0
Q ss_pred CCCCCCCCCCCCcchhHHHHHHHHHHHhhhhHHhhCChHHHHHHHHHHHHHHHhcCCCCCCCCCCccccHHHHHHHHHHH
Q 005603 120 GEKADSVPPPGLMSLHSISLLLEAILLKAKSLEELGHCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKALEL 199 (688)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 199 (688)
.. ..+. -.|.|++|.+++++.++|+..++ .++- .+ -..+++
T Consensus 75 ----~~--------~~~~-----~~fEKAYc~Yrlnk~Dealk~~~-~~~~--------~~-------------~~ll~L 115 (652)
T KOG2376|consen 75 ----LL--------VINS-----FFFEKAYCEYRLNKLDEALKTLK-GLDR--------LD-------------DKLLEL 115 (652)
T ss_pred ----hh--------hcch-----hhHHHHHHHHHcccHHHHHHHHh-cccc--------cc-------------hHHHHH
Confidence 00 0011 11789999999999999998776 2221 11 134556
Q ss_pred hHHHHHHcCCHHHHHHHHHHhhCCCC-CCChhhHHHHHHHHHHHHHhcCccCCCCCccccCCCccCCCchHHHHHHHHHH
Q 005603 200 LPHLWIKAGLLEEAIIAYRRALVKPW-NLDPKKVASVQRDLAVTLLYGGVEARLPPELKVWGPIAPKDNVEEAILLLLIL 278 (688)
Q Consensus 200 l~~~~~~~g~~~eA~~~y~~al~~~~-~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~eea~~~l~~~ 278 (688)
-+.++.+.|+|++|...|+.....+. ..+....+.+ .+..-. +..
T Consensus 116 ~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl---~a~~a~------------------------------l~~- 161 (652)
T KOG2376|consen 116 RAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANL---LAVAAA------------------------------LQV- 161 (652)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHH---HHHHHh------------------------------hhH-
Confidence 67788899999999999999988731 1111111111 010000 000
Q ss_pred HHHHHhhhcCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--------CCCCC-------HHHHHHHHHHHHHcCCcH
Q 005603 279 MEKVASKEMEW-DAEIMDHLTYALSVTGQFELLAEYVEQALP--------GIYNR-------AERWYILALCYSAAGQNE 342 (688)
Q Consensus 279 ~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--------~~p~~-------~~~~~~la~~~~~~g~~~ 342 (688)
.........|. +-+.++..+.++...|+|.+|++.+++++. .+.++ ..+...++.++..+|+..
T Consensus 162 ~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 162 QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 00111112222 456788888899999999999999888832 22211 146678888899999999
Q ss_pred HHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccc--hHHh--------------h------------
Q 005603 343 AALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSIS--DTER--------------V------------ 394 (688)
Q Consensus 343 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~--~~~~--------------~------------ 394 (688)
+|..+|..++ .....+ ....+.+-.++-.+-....-+... ...+ .
T Consensus 242 ea~~iy~~~i------~~~~~D-~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~ 314 (652)
T KOG2376|consen 242 EASSIYVDII------KRNPAD-EPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNA 314 (652)
T ss_pred HHHHHHHHHH------HhcCCC-chHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888887 100000 001111111111000000000000 0000 0
Q ss_pred ---HHHHHHHHHHHHHHHcCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHH
Q 005603 395 ---FFQKEALESLNCAFLNEREDPEMM---YYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKD 468 (688)
Q Consensus 395 ---~~~~~A~~~~~~al~~~p~~~~~~---~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~ 468 (688)
-......++.+....+.+..|... ........+...+.+|..++....+.+|.....+.+.++.+...+|++..
T Consensus 315 lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~ 394 (652)
T KOG2376|consen 315 LLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEV 394 (652)
T ss_pred HHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHH
Confidence 000111122222222222222221 22222233333678888888888888888744677788888888888888
Q ss_pred HHHHHH--------HHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccC
Q 005603 469 AQSIVD--------FSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSV 540 (688)
Q Consensus 469 A~~~~~--------~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (688)
|+.++. ...+.. ..+.+...+-.++...++.+.|...+..++..+..... .
T Consensus 395 A~~il~~~~~~~~ss~~~~~---~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t------------------~ 453 (652)
T KOG2376|consen 395 ALEILSLFLESWKSSILEAK---HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQT------------------G 453 (652)
T ss_pred HHHHHHHHhhhhhhhhhhhc---cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcc------------------c
Confidence 888888 333333 33444555566677777777788888888877655311 1
Q ss_pred CcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 005603 541 KNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFS 603 (688)
Q Consensus 541 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 603 (688)
.+.....+...+..-.+.|+-++|...+++.++.+|++..+...+...|... +.++|..+-.
T Consensus 454 s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 454 SIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred chHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 2223555666777777789999999999999999999988888887777654 4566655443
No 82
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=1.5e-13 Score=133.32 Aligned_cols=370 Identities=14% Similarity=0.083 Sum_probs=272.9
Q ss_pred HHhhhcCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhh
Q 005603 282 VASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQST 361 (688)
Q Consensus 282 ~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 361 (688)
..+.++-.+...|...|.--..++++..|..+|++++..+..+...|...+.+-++......|.+++.+++ ..+
T Consensus 64 d~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAv------t~l 137 (677)
T KOG1915|consen 64 DQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAV------TIL 137 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHH------Hhc
Confidence 34455556788999999999999999999999999999999999999999999999999999999999997 322
Q ss_pred cccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005603 362 TSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMY 441 (688)
Q Consensus 362 ~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 441 (688)
|.. ...|+..-..-...|+. ..|.++|++-+...|+ ..+|......-.+.+..+.|...|++.
T Consensus 138 ---PRV--dqlWyKY~ymEE~LgNi-----------~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerf 200 (677)
T KOG1915|consen 138 ---PRV--DQLWYKYIYMEEMLGNI-----------AGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERF 200 (677)
T ss_pred ---chH--HHHHHHHHHHHHHhccc-----------HHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 222 34555555555667888 9999999999999885 568888888888999999999999999
Q ss_pred HhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhH
Q 005603 442 SDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSM-DQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQR 520 (688)
Q Consensus 442 l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 520 (688)
+-.+|.- ..|...+..-...|+..-|..+|+++++...+. ....++...|..-..+..++.|.-+|+-++...|...
T Consensus 201 V~~HP~v--~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~r 278 (677)
T KOG1915|consen 201 VLVHPKV--SNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGR 278 (677)
T ss_pred heecccH--HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 9999873 899999999999999999999999999876521 2334556677777788899999999999999888762
Q ss_pred H--hhhhcc-------c-c---------ccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChh-
Q 005603 521 E--LHSKNF-------H-K---------TKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPG- 580 (688)
Q Consensus 521 ~--~~~~~~-------~-~---------~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~- 580 (688)
. .+.... . . ..-.|.+.+..+|.+.++|+..-.+-...|+.+.-.+.|++|+...|....
T Consensus 279 aeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ek 358 (677)
T KOG1915|consen 279 AEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEK 358 (677)
T ss_pred HHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHH
Confidence 2 111110 0 0 111344566777777788887777777777877777777777776653211
Q ss_pred --------HHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHH---------------------------
Q 005603 581 --------SWHTTGML-FEAQSQYKEALVSFSISLAIEPDY----IPSIISTA--------------------------- 620 (688)
Q Consensus 581 --------~~~~lg~~-~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la--------------------------- 620 (688)
.|.+.+.. -....+.+.+.+.|+.++++-|.. +..|...|
T Consensus 359 r~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K 438 (677)
T KOG1915|consen 359 RYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK 438 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh
Confidence 12222211 123344555555555555554431 22222222
Q ss_pred ------HHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 005603 621 ------EILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYEL 678 (688)
Q Consensus 621 ------~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 678 (688)
.+-.++++++ ....+|++.++-.|.+-.+|...|.+-..+|+.+.|...|+-|++.
T Consensus 439 lFk~YIelElqL~efD--RcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 439 LFKGYIELELQLREFD--RCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHHHHHHHHHHhhHH--HHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 3334455555 7777888888888888888999999888899999999888888764
No 83
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=2.3e-14 Score=133.97 Aligned_cols=365 Identities=14% Similarity=0.003 Sum_probs=206.3
Q ss_pred ccCCCchHHHHHHHHHHHHHHHhhhcC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCC
Q 005603 262 IAPKDNVEEAILLLLILMEKVASKEME-WDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQ 340 (688)
Q Consensus 262 ~~~~~~~eea~~~l~~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 340 (688)
|..+.+++.|+.++.. .+.... ....+-.++|.|++..|+|++|+..|+-+...+..+.+.|.++|.|++-.|.
T Consensus 32 fls~rDytGAislLef-----k~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEF-----KLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHhcccchhHHHHHHH-----hhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH
Confidence 3445677788877632 221111 2235677899999999999999999999998877788999999999999999
Q ss_pred cHHHHHHHHHhH---HHHHhHhhh-c-ccchh----------hHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHH
Q 005603 341 NEAALNLLKKDQ---VSRGVIQST-T-SQKEH----------FLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLN 405 (688)
Q Consensus 341 ~~~A~~~~~~~l---~~~~~~~~~-~-~~~~~----------~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 405 (688)
|.+|..+-.++- ...+.+-.. . -++.. ...+-...|+.+......+ .+|++.|+
T Consensus 107 Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HY-----------QeAIdvYk 175 (557)
T KOG3785|consen 107 YIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHY-----------QEAIDVYK 175 (557)
T ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHH-----------HHHHHHHH
Confidence 999998887774 000000000 0 00000 0012223333333333444 77888888
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-----
Q 005603 406 CAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEA----- 480 (688)
Q Consensus 406 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----- 480 (688)
+.+.-+|+....-..++.+|.+..-++-+.+.+.-.+...|+++ .+....+..+++.=+-..|++-.+...+..
T Consensus 176 rvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSt-iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~ 254 (557)
T KOG3785|consen 176 RVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDST-IAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP 254 (557)
T ss_pred HHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcH-HHHHHHHHHHhhhhccchhHHHHHHHHhcccccch
Confidence 88877777777777778888888888888887777777778776 666666665554432222222222221111
Q ss_pred -----------------------CCC--CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhcccccccccc
Q 005603 481 -----------------------GSM--DQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITS 535 (688)
Q Consensus 481 -----------------------p~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 535 (688)
|.. .-+++..+++..|..+++..+|+...+..
T Consensus 255 f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl----------------------- 311 (557)
T KOG3785|consen 255 FIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL----------------------- 311 (557)
T ss_pred hHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc-----------------------
Confidence 000 11233344444444444444444433321
Q ss_pred ccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHh---cC------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005603 536 EAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKS---IE------FYSPGSWHTTGMLFEAQSQYKEALVSFSISL 606 (688)
Q Consensus 536 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 606 (688)
.|..|.-+...|.+....|+--...+.++-+-+ +- -+.......++.+++...++++-+.+++..-
T Consensus 312 -----~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~ 386 (557)
T KOG3785|consen 312 -----DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE 386 (557)
T ss_pred -----CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555543333332222211 11 1122234445555555555666665555544
Q ss_pred hcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 005603 607 AIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTN-HDAWMNLGLISKMEGSLQQAADYFQ 673 (688)
Q Consensus 607 ~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~ 673 (688)
....++....++++.++...|++. +|.+.|-+.-..+-.+ ......|+.+|...|+++-|-+.|-
T Consensus 387 sYF~NdD~Fn~N~AQAk~atgny~--eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l 452 (557)
T KOG3785|consen 387 SYFTNDDDFNLNLAQAKLATGNYV--EAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMML 452 (557)
T ss_pred HHhcCcchhhhHHHHHHHHhcChH--HHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 445555566667777777777776 7777665554333222 2333456777777777777666553
No 84
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=2.7e-13 Score=126.98 Aligned_cols=336 Identities=14% Similarity=0.045 Sum_probs=225.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHH
Q 005603 295 DHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYK 374 (688)
Q Consensus 295 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 374 (688)
..|+.+....-.|++|+++|.+++..+|+....-..+|.||++..-++-+.+++.--+ ...|+. ..+..
T Consensus 155 LSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL---------~q~pdS--tiA~N 223 (557)
T KOG3785|consen 155 LSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYL---------RQFPDS--TIAKN 223 (557)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHH---------HhCCCc--HHHHH
Confidence 3456666666789999999999999999888888889999999999998888887775 333433 35555
Q ss_pred HHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHH
Q 005603 375 FLGICYGNVARKSISDTERVFFQKEALESLNCAF-LNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGW 453 (688)
Q Consensus 375 ~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 453 (688)
.++-.+.+.-.- ..|..-.+... ..+...+.+-+.+-.-+.--++-+.|++.+-..++.-| ++.
T Consensus 224 Lkacn~fRl~ng-----------r~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IP----EAR 288 (557)
T KOG3785|consen 224 LKACNLFRLING-----------RTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIP----EAR 288 (557)
T ss_pred HHHHHHhhhhcc-----------chhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhCh----Hhh
Confidence 555544443332 22333333332 22222232222222222222344567777666666554 677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhcccccccc
Q 005603 454 KLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYI 533 (688)
Q Consensus 454 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 533 (688)
.+++..|..+++..+|+.+.+. ..| ..+.-+...|.++...|+--...+.++-+-+...-- |..
T Consensus 289 lNL~iYyL~q~dVqeA~~L~Kd---l~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlV----G~S------- 352 (557)
T KOG3785|consen 289 LNLIIYYLNQNDVQEAISLCKD---LDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLV----GES------- 352 (557)
T ss_pred hhheeeecccccHHHHHHHHhh---cCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHh----ccc-------
Confidence 8888889999999999887765 456 677778888999988888766655554443322110 000
Q ss_pred ccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCC
Q 005603 534 TSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIE-PDY 612 (688)
Q Consensus 534 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~ 612 (688)
...-+...-...+|.+++-..++++-+.++...-...-++....++++.+....|++.+|.+.|-+.-... .+.
T Consensus 353 -----a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~ 427 (557)
T KOG3785|consen 353 -----ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNK 427 (557)
T ss_pred -----ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhh
Confidence 00011122345677778888899999999998888888888889999999999999999999997765544 234
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcccCCC
Q 005603 613 IPSIISTAEILMKLGRQSMPIARSFLMNALRLE-PTNH-DAWMNLGLISKMEGSLQQAADYFQAAYELKLSA 682 (688)
Q Consensus 613 ~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~-p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 682 (688)
......++.+|...++.. -|-..+- +.+ |... ..+..++......+++--|.+.|...-.++|+-
T Consensus 428 ~~Y~s~LArCyi~nkkP~--lAW~~~l---k~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 428 ILYKSMLARCYIRNKKPQ--LAWDMML---KTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHHHHHHHHhcCCch--HHHHHHH---hcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 445667899999999988 7766553 333 3222 234456777888899888888888887788753
No 85
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=9e-13 Score=131.89 Aligned_cols=385 Identities=12% Similarity=0.029 Sum_probs=253.0
Q ss_pred CccCCCchHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCC
Q 005603 261 PIAPKDNVEEAILLLLILMEKVASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQ 340 (688)
Q Consensus 261 ~~~~~~~~eea~~~l~~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 340 (688)
.+...+.+++|+... ..++...|+++.++.....++.+.++|++|+...+.-......+ ...+..|.|.++.+.
T Consensus 21 ~~~~~~e~e~a~k~~-----~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTA-----NKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNK 94 (652)
T ss_pred HhccchHHHHHHHHH-----HHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHccc
Confidence 455678888888763 66778889999999999999999999999996665533222211 222788999999999
Q ss_pred cHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHH
Q 005603 341 NEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYY 420 (688)
Q Consensus 341 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 420 (688)
.++|+..++-+ ...+ .......+.++.+.+++ ++|..+|+...+.+.++.+....
T Consensus 95 ~Dealk~~~~~----------~~~~----~~ll~L~AQvlYrl~~y-----------dealdiY~~L~kn~~dd~d~~~r 149 (652)
T KOG2376|consen 95 LDEALKTLKGL----------DRLD----DKLLELRAQVLYRLERY-----------DEALDIYQHLAKNNSDDQDEERR 149 (652)
T ss_pred HHHHHHHHhcc----------cccc----hHHHHHHHHHHHHHhhH-----------HHHHHHHHHHHhcCCchHHHHHH
Confidence 99999988833 1222 35677888889999999 99999999998777666554433
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC-------------CCcHH
Q 005603 421 LGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGS-------------MDQLE 487 (688)
Q Consensus 421 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------------~~~~~ 487 (688)
....-.... ..+ + ..+.+...|.+.-+.+++.+.++...|+|.+|++.+++++.+... .+-..
T Consensus 150 ~nl~a~~a~--l~~-~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~ 225 (652)
T KOG2376|consen 150 ANLLAVAAA--LQV-Q-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNP 225 (652)
T ss_pred HHHHHHHHh--hhH-H-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHH
Confidence 322221110 011 1 333444455533378888899999999999999999888432110 01234
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccc------------c--------------------------
Q 005603 488 LLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFH------------K-------------------------- 529 (688)
Q Consensus 488 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~------------~-------------------------- 529 (688)
+...++.++..+|+..+|..+|...+...|.+........+ .
T Consensus 226 IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q 305 (652)
T KOG2376|consen 226 IRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ 305 (652)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 56778888889999999999998888877765533222110 0
Q ss_pred --------------------ccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC-hhHHHHHHHH
Q 005603 530 --------------------TKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYS-PGSWHTTGML 588 (688)
Q Consensus 530 --------------------~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~ 588 (688)
............|..............+...+.+|..++......+|.. ..+...++.+
T Consensus 306 k~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl 385 (652)
T KOG2376|consen 306 KQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQL 385 (652)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHH
Confidence 0001111222233222222223333333336888888888888888876 6678888899
Q ss_pred HHHcCCHHHHHHHHHHHH--------hcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh-------CCCCHHHHH
Q 005603 589 FEAQSQYKEALVSFSISL--------AIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRL-------EPTNHDAWM 653 (688)
Q Consensus 589 ~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~-------~p~~~~~~~ 653 (688)
...+|+++.|+..+...+ +.. ..+.+-..+-.++.+.++.+ .|...+..++.- .+..-..|.
T Consensus 386 ~is~gn~~~A~~il~~~~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~--~a~~vl~~Ai~~~~~~~t~s~~l~~~~~ 462 (652)
T KOG2376|consen 386 KISQGNPEVALEILSLFLESWKSSILEAK-HLPGTVGAIVALYYKIKDND--SASAVLDSAIKWWRKQQTGSIALLSLMR 462 (652)
T ss_pred HHhcCCHHHHHHHHHHHhhhhhhhhhhhc-cChhHHHHHHHHHHhccCCc--cHHHHHHHHHHHHHHhcccchHHHhHHH
Confidence 999999999999988333 221 12233334445566667766 566666666552 222234566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcccCCCC
Q 005603 654 NLGLISKMEGSLQQAADYFQAAYELKLSAP 683 (688)
Q Consensus 654 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 683 (688)
..+....+.|+-++|...+++.++.+|++.
T Consensus 463 ~aa~f~lr~G~~~ea~s~leel~k~n~~d~ 492 (652)
T KOG2376|consen 463 EAAEFKLRHGNEEEASSLLEELVKFNPNDT 492 (652)
T ss_pred HHhHHHHhcCchHHHHHHHHHHHHhCCchH
Confidence 677777888999999999999999888764
No 86
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.65 E-value=1.7e-12 Score=135.58 Aligned_cols=45 Identities=22% Similarity=0.195 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005603 631 MPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAA 675 (688)
Q Consensus 631 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 675 (688)
+++|.++++..+...|++..+|..--.+|.+.|++--|+.++.+|
T Consensus 473 Le~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~kA 517 (517)
T PF12569_consen 473 LEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKKA 517 (517)
T ss_pred HHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHhC
Confidence 778999999999999999999999999999999999999888764
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.65 E-value=3.5e-13 Score=139.29 Aligned_cols=315 Identities=12% Similarity=-0.043 Sum_probs=224.9
Q ss_pred cCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCC---CHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcc
Q 005603 287 MEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYN---RAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTS 363 (688)
Q Consensus 287 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 363 (688)
.|+.+..+..++..+...|+.+.+...+.++....|. ..+..+..+.++...|++++|...+++++ ..
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l---------~~ 72 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLL---------DD 72 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------HH
Confidence 5888999999999999999999998888887766654 45678888999999999999999999997 33
Q ss_pred cchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005603 364 QKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSD 443 (688)
Q Consensus 364 ~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 443 (688)
.|.. ..++.. +..+...+... +....+...+.......|.....+..+|.++...|++++|...++++++
T Consensus 73 ~P~~--~~a~~~-~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~ 142 (355)
T cd05804 73 YPRD--LLALKL-HLGAFGLGDFS-------GMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE 142 (355)
T ss_pred CCCc--HHHHHH-hHHHHHhcccc-------cCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3433 233332 44444444330 0114455555444456677777888899999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHH
Q 005603 444 TVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMD--QLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRE 521 (688)
Q Consensus 444 ~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 521 (688)
..|++. .++..+|.++...|++++|+.++++++...|... ....+..++.++...|++++|+..|++++...|..
T Consensus 143 ~~p~~~-~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~-- 219 (355)
T cd05804 143 LNPDDA-WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAES-- 219 (355)
T ss_pred hCCCCc-HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCC--
Confidence 999998 9999999999999999999999999998876211 23456789999999999999999999987553310
Q ss_pred hhhhccccccccccccccCCcchHHH--HHHHHHHHHHcCChhHHHHH---HHHHHhcCCC--ChhHHHHHHHHHHHcCC
Q 005603 522 LHSKNFHKTKYITSEAPSVKNLEIAT--WQDLATIYMKLGSLPDAEIC---TEKAKSIEFY--SPGSWHTTGMLFEAQSQ 594 (688)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~---~~~al~~~p~--~~~~~~~lg~~~~~~g~ 594 (688)
+..... ...+...+...|....+..+ ........|. ........+.++...|+
T Consensus 220 --------------------~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 279 (355)
T cd05804 220 --------------------DPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGD 279 (355)
T ss_pred --------------------ChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCC
Confidence 001111 10222333334433333322 1111111122 22223457788889999
Q ss_pred HHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Q 005603 595 YKEALVSFSISLAIEPD---------YIPSIISTAEILMKLGRQSMPIARSFLMNALRLE 645 (688)
Q Consensus 595 ~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~ 645 (688)
.++|...++........ ........+.++...|+++ +|+..+..++...
T Consensus 280 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~--~A~~~L~~al~~a 337 (355)
T cd05804 280 KDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYA--TALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHH--HHHHHHHHHHHHH
Confidence 99999999877653221 3456678889999999998 9999999998753
No 88
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.62 E-value=3.9e-14 Score=136.82 Aligned_cols=189 Identities=10% Similarity=-0.148 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhcccc
Q 005603 451 RGWKLLALILSADQRLKDAQSIVDFSLDEAGSM-DQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHK 529 (688)
Q Consensus 451 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 529 (688)
..++.+|..+...|++++|+..+++++...|.. ....+++.+|.++...|++++|+..|+++++..|+
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~----------- 102 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN----------- 102 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-----------
Confidence 677777777777777888877777777777721 11246677777777777777777777777777665
Q ss_pred ccccccccccCCcchHHHHHHHHHHHHHc--------CChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 005603 530 TKYITSEAPSVKNLEIATWQDLATIYMKL--------GSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVS 601 (688)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 601 (688)
.+....+++.+|.++... |++++|+..+++++..+|++..++..+..+....+ ..
T Consensus 103 -----------~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~~-- 165 (235)
T TIGR03302 103 -----------HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----RL-- 165 (235)
T ss_pred -----------CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----HH--
Confidence 333445677777777765 66777777777777777776655433322211110 00
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 005603 602 FSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTN---HDAWMNLGLISKMEGSLQQAADYFQAAYEL 678 (688)
Q Consensus 602 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 678 (688)
......+|.++...|++. +|+..+++++...|+. +.+++.+|.++...|++++|..+++.....
T Consensus 166 -----------~~~~~~~a~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 166 -----------AGKELYVARFYLKRGAYV--AAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred -----------HHHHHHHHHHHHHcCChH--HHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 112357888999999999 9999999999997764 589999999999999999999998887766
Q ss_pred cC
Q 005603 679 KL 680 (688)
Q Consensus 679 ~p 680 (688)
.|
T Consensus 233 ~~ 234 (235)
T TIGR03302 233 YP 234 (235)
T ss_pred CC
Confidence 55
No 89
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.58 E-value=5.6e-14 Score=122.84 Aligned_cols=113 Identities=12% Similarity=0.030 Sum_probs=104.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q 005603 548 WQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLG 627 (688)
Q Consensus 548 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 627 (688)
+..+|.++...|++++|+.+|++++..+|.++.+|..+|.++...|++++|+..|++++.++|+++.+++++|.++...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005603 628 RQSMPIARSFLMNALRLEPTNHDAWMNLGLISKME 662 (688)
Q Consensus 628 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 662 (688)
+++ +|+..|+++++..|+++..|.++|.+....
T Consensus 107 ~~~--eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 107 EPG--LAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CHH--HHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 998 999999999999999999999888876543
No 90
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=3.7e-12 Score=114.48 Aligned_cols=189 Identities=19% Similarity=0.200 Sum_probs=170.3
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHH
Q 005603 410 NEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELL 489 (688)
Q Consensus 410 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 489 (688)
..++...++-....+....|+.+-|..++++.....|++. .+....|..+...|++++|+++|+..++.+| .+...+
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~-RV~~lkam~lEa~~~~~~A~e~y~~lL~ddp--t~~v~~ 123 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSK-RVGKLKAMLLEATGNYKEAIEYYESLLEDDP--TDTVIR 123 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCh-hHHHHHHHHHHHhhchhhHHHHHHHHhccCc--chhHHH
Confidence 4455566666778888999999999999999999999999 9999999999999999999999999999999 788888
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHH
Q 005603 490 RLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTE 569 (688)
Q Consensus 490 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 569 (688)
....-+...+|+.-+|++.+...++..+. +.++|..++.+|...|+|++|.-|++
T Consensus 124 KRKlAilka~GK~l~aIk~ln~YL~~F~~-------------------------D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 124 KRKLAILKAQGKNLEAIKELNEYLDKFMN-------------------------DQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHhcC-------------------------cHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 88888999999999999999999999777 79999999999999999999999999
Q ss_pred HHHhcCCCChhHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 005603 570 KAKSIEFYSPGSWHTTGMLFEAQS---QYKEALVSFSISLAIEPDYIPSIISTAEILMKL 626 (688)
Q Consensus 570 ~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 626 (688)
+.+-+.|.++..+..+|.+++.+| ++.-|.++|.++++++|.+..+++.+-.+....
T Consensus 179 E~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~l 238 (289)
T KOG3060|consen 179 ELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSAL 238 (289)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHH
Confidence 999999999999999999988877 577899999999999998888887766555443
No 91
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.57 E-value=3.6e-11 Score=115.49 Aligned_cols=305 Identities=13% Similarity=0.001 Sum_probs=230.1
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHH
Q 005603 328 WYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCA 407 (688)
Q Consensus 328 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 407 (688)
...-|..-+..|+|.+|.....+.- ...+.+ ..++..-+.+-...|+. +.+-.++.++
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rna---------e~~e~p--~l~~l~aA~AA~qrgd~-----------~~an~yL~ea 144 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNA---------EHGEQP--VLAYLLAAEAAQQRGDE-----------DRANRYLAEA 144 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhh---------hcCcch--HHHHHHHHHHHHhcccH-----------HHHHHHHHHH
Confidence 3445667778899999999998874 222222 45555566778888998 9999999999
Q ss_pred HHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcH
Q 005603 408 FLNERE-DPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQL 486 (688)
Q Consensus 408 l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 486 (688)
-+..++ ...+....+.+....|+++.|.....++++..|.++ .+......+|...|++.....++.+.-+..-- .+.
T Consensus 145 ae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~-~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l-~~~ 222 (400)
T COG3071 145 AELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHP-EVLRLALRAYIRLGAWQALLAILPKLRKAGLL-SDE 222 (400)
T ss_pred hccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCCh-HHHHHHHHHHHHhccHHHHHHHHHHHHHccCC-ChH
Confidence 988444 355778889999999999999999999999999999 99999999999999999999999887765431 122
Q ss_pred HH--HHHHHHH--HHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChh
Q 005603 487 EL--LRLKAVL--QIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLP 562 (688)
Q Consensus 487 ~~--~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 562 (688)
+. +-..+.. +...++...+ +-+..-.+..|. ....++.+...++.-+...|+.+
T Consensus 223 e~~~le~~a~~glL~q~~~~~~~-~gL~~~W~~~pr---------------------~lr~~p~l~~~~a~~li~l~~~~ 280 (400)
T COG3071 223 EAARLEQQAWEGLLQQARDDNGS-EGLKTWWKNQPR---------------------KLRNDPELVVAYAERLIRLGDHD 280 (400)
T ss_pred HHHHHHHHHHHHHHHHHhccccc-hHHHHHHHhccH---------------------HhhcChhHHHHHHHHHHHcCChH
Confidence 22 1111111 1112222211 112222222222 12235888889999999999999
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 005603 563 DAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNAL 642 (688)
Q Consensus 563 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al 642 (688)
+|.+....+++..-+.. ....++ ...-++...=++..++.++..|+++..+..+|.++.+.+.+. +|..+|+.++
T Consensus 281 ~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~--kA~~~leaAl 355 (400)
T COG3071 281 EAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWG--KASEALEAAL 355 (400)
T ss_pred HHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHH--HHHHHHHHHH
Confidence 99999999998765433 222222 345678899999999999999999999999999999999999 9999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--cCCCCC
Q 005603 643 RLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYEL--KLSAPV 684 (688)
Q Consensus 643 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~ 684 (688)
+..|+ ...|..+|.++.+.|+..+|.++++.++.+ .|+.|.
T Consensus 356 ~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~~s 398 (400)
T COG3071 356 KLRPS-ASDYAELADALDQLGEPEEAEQVRREALLLTRQPNLPS 398 (400)
T ss_pred hcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCcc
Confidence 98875 567899999999999999999999999864 444443
No 92
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.57 E-value=3e-13 Score=130.63 Aligned_cols=186 Identities=12% Similarity=-0.074 Sum_probs=150.2
Q ss_pred HHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 005603 369 LAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDP---EMMYYLGLEHAVQRNVEAAFDYAIMYSDTV 445 (688)
Q Consensus 369 ~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 445 (688)
.+..++.+|..+...|++ ++|+..|++++...|.++ .+++.+|.++...|++++|+..++++++..
T Consensus 32 ~~~~~~~~g~~~~~~~~~-----------~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~ 100 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDY-----------TEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH 100 (235)
T ss_pred CHHHHHHHHHHHHHcCCH-----------HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 368889999999999999 999999999999998875 578999999999999999999999999999
Q ss_pred CCCcHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005603 446 AGNSGR---GWKLLALILSAD--------QRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLA 514 (688)
Q Consensus 446 p~~~~~---~~~~la~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 514 (688)
|+++ . +++.+|.++... |++++|+..+++++..+| .+...+..+..+.. ...
T Consensus 101 p~~~-~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~a~~~~~~--------------~~~ 163 (235)
T TIGR03302 101 PNHP-DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP--NSEYAPDAKKRMDY--------------LRN 163 (235)
T ss_pred cCCC-chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC--CChhHHHHHHHHHH--------------HHH
Confidence 9877 5 688889998876 789999999999999998 44433322211111 100
Q ss_pred HHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC---hhHHHHHHHHHHH
Q 005603 515 MIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYS---PGSWHTTGMLFEA 591 (688)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~ 591 (688)
. .......+|.+|...|++.+|+..+++++...|+. +.+++.+|.++..
T Consensus 164 ~----------------------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~ 215 (235)
T TIGR03302 164 R----------------------------LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLK 215 (235)
T ss_pred H----------------------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHH
Confidence 0 12334578888999999999999999999987764 5789999999999
Q ss_pred cCCHHHHHHHHHHHHhcCC
Q 005603 592 QSQYKEALVSFSISLAIEP 610 (688)
Q Consensus 592 ~g~~~~A~~~~~~al~~~p 610 (688)
.|++++|..+++......|
T Consensus 216 lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 216 LGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred cCCHHHHHHHHHHHHhhCC
Confidence 9999999998887766555
No 93
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.57 E-value=3.2e-14 Score=124.34 Aligned_cols=116 Identities=22% Similarity=0.216 Sum_probs=110.4
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 005603 565 EICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRL 644 (688)
Q Consensus 565 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~ 644 (688)
..+++++++++|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|+++ +|+..|++++.+
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~--~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYT--TAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHH--HHHHHHHHHHhc
Confidence 46789999999875 6678999999999999999999999999999999999999999999999 999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccCCCCCC
Q 005603 645 EPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKLSAPVQ 685 (688)
Q Consensus 645 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 685 (688)
+|+++.+++++|.++...|++++|+..|++++.+.|+++..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~ 128 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASW 128 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 99999999999999999999999999999999999998753
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.55 E-value=3.5e-11 Score=140.51 Aligned_cols=352 Identities=14% Similarity=0.032 Sum_probs=255.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcc----cchh
Q 005603 293 IMDHLTYALSVTGQFELLAEYVEQALP-GIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTS----QKEH 367 (688)
Q Consensus 293 ~~~~l~~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~----~~~~ 367 (688)
.....+..+...|++..+...++.+-. ....++......+.++...|++++|...+..+. ..... .+..
T Consensus 376 ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~------~~~~~~~~~~~~~ 449 (903)
T PRK04841 376 ILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAE------QELKDRNIELDGT 449 (903)
T ss_pred HHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHH------HhccccCcccchh
Confidence 344456667777888877777665411 112344556777888899999999999998875 11111 1222
Q ss_pred hHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005603 368 FLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDP-----EMMYYLGLEHAVQRNVEAAFDYAIMYS 442 (688)
Q Consensus 368 ~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~l 442 (688)
........++.++...|++ ++|...+++++...+... .+...+|.++...|++++|...+++++
T Consensus 450 ~~~~~~~~~a~~~~~~g~~-----------~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al 518 (903)
T PRK04841 450 LQAEFNALRAQVAINDGDP-----------EEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTE 518 (903)
T ss_pred HHHHHHHHHHHHHHhCCCH-----------HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455666788888889999 999999999987544332 345678889999999999999999998
Q ss_pred hhcCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC------CcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005603 443 DTVAGN-----SGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSM------DQLELLRLKAVLQIAQEQPKQAIGTYRI 511 (688)
Q Consensus 443 ~~~p~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~ 511 (688)
...... ...++..+|.++...|++++|...+++++...... .....+..+|.++...|++++|...+++
T Consensus 519 ~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 598 (903)
T PRK04841 519 QMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARK 598 (903)
T ss_pred HHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 763321 12456678999999999999999999998753311 1233456788999999999999999999
Q ss_pred HHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCh---hHHH----H
Q 005603 512 LLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSP---GSWH----T 584 (688)
Q Consensus 512 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~----~ 584 (688)
++...... ........+..++.++...|++++|...+.++..+.+... .... .
T Consensus 599 al~~~~~~--------------------~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 658 (903)
T PRK04841 599 GLEVLSNY--------------------QPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKV 658 (903)
T ss_pred hHHhhhcc--------------------CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHH
Confidence 98875431 0112356677899999999999999999999977643221 1111 1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC------CCHHHHHH
Q 005603 585 TGMLFEAQSQYKEALVSFSISLAIEPDYI----PSIISTAEILMKLGRQSMPIARSFLMNALRLEP------TNHDAWMN 654 (688)
Q Consensus 585 lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p------~~~~~~~~ 654 (688)
....+...|+.+.|...+.......+... ..+..++.++...|+++ +|...+++++.... ....++..
T Consensus 659 ~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~--~A~~~l~~al~~~~~~g~~~~~a~~~~~ 736 (903)
T PRK04841 659 RLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFD--EAEIILEELNENARSLRLMSDLNRNLIL 736 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 22445568899999999877665332222 12567899999999988 99999999988631 22457888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcccCCCC
Q 005603 655 LGLISKMEGSLQQAADYFQAAYELKLSAP 683 (688)
Q Consensus 655 lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 683 (688)
+|.++...|+.++|...+.+|+++.....
T Consensus 737 la~a~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 737 LNQLYWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence 99999999999999999999999875543
No 95
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.55 E-value=1.3e-13 Score=127.32 Aligned_cols=126 Identities=17% Similarity=0.244 Sum_probs=117.8
Q ss_pred cCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHhCCCChHHHHH
Q 005603 558 LGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEIL-MKLGRQSMPIARS 636 (688)
Q Consensus 558 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~~~~A~~ 636 (688)
.++.++++..+++++..+|+++..|..+|.++...|++++|+..|++++++.|+++.++..+|.++ ...|+...++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 677899999999999999999999999999999999999999999999999999999999999975 6778752239999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccCCCC
Q 005603 637 FLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKLSAP 683 (688)
Q Consensus 637 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 683 (688)
.++++++.+|+++.+++.+|..+...|++++|+.+|++++++.|.+.
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 99999999999999999999999999999999999999999988764
No 96
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.53 E-value=1.4e-11 Score=128.80 Aligned_cols=319 Identities=15% Similarity=0.057 Sum_probs=223.8
Q ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHH
Q 005603 324 RAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALES 403 (688)
Q Consensus 324 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~ 403 (688)
..+.....+.++...|++++|++++.+.. ..-.+. ....-..|.++...|+. ++|...
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~---------~~I~Dk--~~~~E~rA~ll~kLg~~-----------~eA~~~ 60 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNE---------KQILDK--LAVLEKRAELLLKLGRK-----------EEAEKI 60 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhh---------hhCCCH--HHHHHHHHHHHHHcCCH-----------HHHHHH
Confidence 45667778889999999999999998763 222222 57778889999999999 999999
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHH
Q 005603 404 LNCAFLNEREDPEMMYYLGLEHAVQR-----NVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQ-SIVDFSL 477 (688)
Q Consensus 404 ~~~al~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~-~~~~~al 477 (688)
|...+..+|++...+..+..+..... +.+.-...|++.....|.+. +...+...+.....|.... .++...+
T Consensus 61 y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~--~~~rl~L~~~~g~~F~~~~~~yl~~~l 138 (517)
T PF12569_consen 61 YRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSD--APRRLPLDFLEGDEFKERLDEYLRPQL 138 (517)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCcccc--chhHhhcccCCHHHHHHHHHHHHHHHH
Confidence 99999999999988888887773333 56777888888888888763 2223333333323343333 3334444
Q ss_pred hhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcc-hHHHHHHHHHHHH
Q 005603 478 DEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNL-EIATWQDLATIYM 556 (688)
Q Consensus 478 ~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~la~~~~ 556 (688)
... .+.++..+-.+|... .++ .++..++...-......+.. ..........|. ...+++.+|..|.
T Consensus 139 ~Kg----vPslF~~lk~Ly~d~---~K~-~~i~~l~~~~~~~l~~~~~~-----~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 139 RKG----VPSLFSNLKPLYKDP---EKA-AIIESLVEEYVNSLESNGSF-----SNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred hcC----CchHHHHHHHHHcCh---hHH-HHHHHHHHHHHHhhcccCCC-----CCccccccCCchHHHHHHHHHHHHHH
Confidence 322 344555554454422 222 12222222211110000000 000000111222 2466788999999
Q ss_pred HcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHH
Q 005603 557 KLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARS 636 (688)
Q Consensus 557 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~ 636 (688)
..|++++|+.++++++...|..++.+...|.++...|++.+|...++.+-.+++.+-..-...+..+.+.|+.+ +|..
T Consensus 206 ~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e--~A~~ 283 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIE--EAEK 283 (517)
T ss_pred HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHH--HHHH
Confidence 99999999999999999999999999999999999999999999999999999999888888999999999998 9999
Q ss_pred HHHHHHHhCC--CC-----HHHHHH--HHHHHHHcCCHHHHHHHHHHHHcccCC
Q 005603 637 FLMNALRLEP--TN-----HDAWMN--LGLISKMEGSLQQAADYFQAAYELKLS 681 (688)
Q Consensus 637 ~~~~al~~~p--~~-----~~~~~~--lg~~~~~~g~~~~A~~~~~~al~l~p~ 681 (688)
.+....+.+- .. .-.|+. .|.+|.+.|++..|+..|..+.+...+
T Consensus 284 ~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~ 337 (517)
T PF12569_consen 284 TASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDD 337 (517)
T ss_pred HHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 8877766542 11 125654 699999999999999999998876544
No 97
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.53 E-value=7.6e-13 Score=135.67 Aligned_cols=225 Identities=16% Similarity=0.144 Sum_probs=195.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHH
Q 005603 412 REDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRL 491 (688)
Q Consensus 412 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 491 (688)
|..+.....++..+...|-...|+..+++. ..|-....+|...|+..+|..+..+-++.. .++..|..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek~---~d~~lyc~ 462 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEKD---PDPRLYCL 462 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcCC---CcchhHHH
Confidence 444566678999999999999999999876 888888999999999999999999999844 46666666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 005603 492 KAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKA 571 (688)
Q Consensus 492 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 571 (688)
+|.+.....-+++|.++.+.. +..+...+|......++|+++.++++..
T Consensus 463 LGDv~~d~s~yEkawElsn~~-------------------------------sarA~r~~~~~~~~~~~fs~~~~hle~s 511 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYI-------------------------------SARAQRSLALLILSNKDFSEADKHLERS 511 (777)
T ss_pred hhhhccChHHHHHHHHHhhhh-------------------------------hHHHHHhhccccccchhHHHHHHHHHHH
Confidence 666655554444444444332 3456667777777789999999999999
Q ss_pred HhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHH
Q 005603 572 KSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDA 651 (688)
Q Consensus 572 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~ 651 (688)
++++|-....|+.+|.+..+.++++.|.++|..++.++|++..+|.+++..|.+.|+.. +|...+.++++.+-++..+
T Consensus 512 l~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~--ra~~~l~EAlKcn~~~w~i 589 (777)
T KOG1128|consen 512 LEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKK--RAFRKLKEALKCNYQHWQI 589 (777)
T ss_pred hhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhH--HHHHHHHHHhhcCCCCCee
Confidence 99999999999999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcccCC
Q 005603 652 WMNLGLISKMEGSLQQAADYFQAAYELKLS 681 (688)
Q Consensus 652 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 681 (688)
|-|...+....|.+++|++.|.+.+.+..+
T Consensus 590 WENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 590 WENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred eechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999876543
No 98
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=2.9e-11 Score=110.93 Aligned_cols=362 Identities=12% Similarity=-0.005 Sum_probs=250.8
Q ss_pred CCchHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHH
Q 005603 265 KDNVEEAILLLLILMEKVASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAA 344 (688)
Q Consensus 265 ~~~~eea~~~l~~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 344 (688)
..+++.+|.++ ....++.|.+-..+..+|.||....+|..|..+|++.-...|......+..|..+++.+.+..|
T Consensus 23 d~ry~DaI~~l-----~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 23 DARYADAIQLL-----GSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HhhHHHHHHHH-----HHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHH
Confidence 45667777765 5567788889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005603 345 LNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLE 424 (688)
Q Consensus 345 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 424 (688)
+.+...+. . .+.+...+...-+.+....++. ..+....++.- ..++.+...+.|-+
T Consensus 98 LrV~~~~~----------D-~~~L~~~~lqLqaAIkYse~Dl-----------~g~rsLveQlp--~en~Ad~~in~gCl 153 (459)
T KOG4340|consen 98 LRVAFLLL----------D-NPALHSRVLQLQAAIKYSEGDL-----------PGSRSLVEQLP--SENEADGQINLGCL 153 (459)
T ss_pred HHHHHHhc----------C-CHHHHHHHHHHHHHHhcccccC-----------cchHHHHHhcc--CCCccchhccchhe
Confidence 99988874 1 1334455555666666667776 66666655532 12567888999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----cCCC-----------------
Q 005603 425 HAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDE----AGSM----------------- 483 (688)
Q Consensus 425 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~----------------- 483 (688)
.++.|+++.|++-|+.+++...-.+ -.-++++.+++..++++.|+++....++. +|..
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqp-llAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt 232 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNT 232 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccch
Confidence 9999999999999999999998888 88899999999999999999988777643 3321
Q ss_pred ------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHH
Q 005603 484 ------DQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMK 557 (688)
Q Consensus 484 ------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 557 (688)
.-..++..++-++.+.|+++.|.+.+..+-. . .....++..+.+++..-.
T Consensus 233 ~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPP---R--------------------aE~elDPvTLHN~Al~n~- 288 (459)
T KOG4340|consen 233 LVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPP---R--------------------AEEELDPVTLHNQALMNM- 288 (459)
T ss_pred HHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCC---c--------------------ccccCCchhhhHHHHhcc-
Confidence 0134566778888999999888766543322 1 112224555666554332
Q ss_pred cCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHH------------------HHhcCCCCHH-HHHH
Q 005603 558 LGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSI------------------SLAIEPDYIP-SIIS 618 (688)
Q Consensus 558 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~------------------al~~~p~~~~-~~~~ 618 (688)
.+++.+...-++-.+.++|--++++.++-.+|++..-++-|...+.+ ++-..|.+++ +...
T Consensus 289 ~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KK 368 (459)
T KOG4340|consen 289 DARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKK 368 (459)
T ss_pred cCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHH
Confidence 35566666666667777776666777777777776666666554322 1111122221 1111
Q ss_pred HH---------------HHHHHhCCCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccC
Q 005603 619 TA---------------EILMKLGRQS---MPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKL 680 (688)
Q Consensus 619 la---------------~~~~~~g~~~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 680 (688)
++ .+.....+.+ +..|++.|+.+++.. -.+....+++|+...+|.-+.+.|....+.-.
T Consensus 369 L~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ 445 (459)
T KOG4340|consen 369 LDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCN 445 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhc
Confidence 11 1111111111 224455555555542 34567788999999999999999999888665
Q ss_pred CCC
Q 005603 681 SAP 683 (688)
Q Consensus 681 ~~~ 683 (688)
++.
T Consensus 446 ehd 448 (459)
T KOG4340|consen 446 DHD 448 (459)
T ss_pred ccc
Confidence 544
No 99
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.51 E-value=3.9e-09 Score=107.10 Aligned_cols=278 Identities=10% Similarity=0.034 Sum_probs=162.5
Q ss_pred HHHHHHHHHHH-HcCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC---cHHHHHHHHHHHHHcCCHHH
Q 005603 398 KEALESLNCAF-LNERE-----DPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGN---SGRGWKLLALILSADQRLKD 468 (688)
Q Consensus 398 ~~A~~~~~~al-~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~la~~~~~~~~~~~ 468 (688)
.+-+..|.+|+ ..+|. -...|..+|..|...|+.+.|...|+++++..-.. ...+|...|..-....+++.
T Consensus 364 ~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~ 443 (835)
T KOG2047|consen 364 AEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEA 443 (835)
T ss_pred HHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHH
Confidence 66677777766 34542 25677777888888888888888888777654221 13677777777777777888
Q ss_pred HHHHHHHHHhhcCC----------C------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHH---hhhhccc-
Q 005603 469 AQSIVDFSLDEAGS----------M------DQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRE---LHSKNFH- 528 (688)
Q Consensus 469 A~~~~~~al~~~p~----------~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~- 528 (688)
|+.+++++...... + ....+|...+.+....|-++.....|++++.+---.+. .+.....
T Consensus 444 Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEe 523 (835)
T KOG2047|consen 444 ALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEE 523 (835)
T ss_pred HHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 88777777632211 0 23456777777777777777777777777776322111 1111000
Q ss_pred -----cccccccccc--cCCcchHHHHHHHHHHHHH---cCChhHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHcCCHH
Q 005603 529 -----KTKYITSEAP--SVKNLEIATWQDLATIYMK---LGSLPDAEICTEKAKSIEFYS--PGSWHTTGMLFEAQSQYK 596 (688)
Q Consensus 529 -----~~~~~~~~~~--~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~ 596 (688)
.+-+.|.+.+ ...|...++|...-..+.. .-..+.|..+|+++++..|.. ...+...+..-..-|--.
T Consensus 524 h~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar 603 (835)
T KOG2047|consen 524 HKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLAR 603 (835)
T ss_pred hHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 1122222221 2234445555443332222 235666777777777665521 223445555556666666
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHH-----HHhCCCChHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHH
Q 005603 597 EALVSFSISLAIEPDYIPSIISTAEIL-----MKLGRQSMPIARSFLMNALRLEPTNH--DAWMNLGLISKMEGSLQQAA 669 (688)
Q Consensus 597 ~A~~~~~~al~~~p~~~~~~~~la~~~-----~~~g~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~ 669 (688)
.|+..|+++-..-+. .-.+.+=++| .-.|-. .-+..|+++++.-|+.. ......+..-...|..+.|.
T Consensus 604 ~amsiyerat~~v~~--a~~l~myni~I~kaae~yGv~---~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRAR 678 (835)
T KOG2047|consen 604 HAMSIYERATSAVKE--AQRLDMYNIYIKKAAEIYGVP---RTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRAR 678 (835)
T ss_pred HHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHhCCc---ccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 677777666543221 1111111222 222332 56778888888877654 34556788888999999999
Q ss_pred HHHHHHHcccC
Q 005603 670 DYFQAAYELKL 680 (688)
Q Consensus 670 ~~~~~al~l~p 680 (688)
..|.-+-++-|
T Consensus 679 aIya~~sq~~d 689 (835)
T KOG2047|consen 679 AIYAHGSQICD 689 (835)
T ss_pred HHHHhhhhcCC
Confidence 99998887643
No 100
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.51 E-value=2.7e-13 Score=129.35 Aligned_cols=271 Identities=15% Similarity=0.088 Sum_probs=208.4
Q ss_pred HHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh------
Q 005603 375 FLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDP----EMMYYLGLEHAVQRNVEAAFDYAIMYSDT------ 444 (688)
Q Consensus 375 ~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~------ 444 (688)
.-|.-+++.|+. ...+.+|+.+++...++. .++..||..|+..++|.+|+++...-+.+
T Consensus 22 lEGERLck~gdc-----------raGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgd 90 (639)
T KOG1130|consen 22 LEGERLCKMGDC-----------RAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGD 90 (639)
T ss_pred HHHHHHHhccch-----------hhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcc
Confidence 345667778888 999999999999888774 46778999999999999999986544322
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC----CCCcHHHHHHHHHHHHHcCC-------------------
Q 005603 445 VAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAG----SMDQLELLRLKAVLQIAQEQ------------------- 501 (688)
Q Consensus 445 ~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~~~la~~~~~~g~------------------- 501 (688)
.-... .+--++|.++-..|.|++|+.+..+-++... ......+++++|.+|...|+
T Consensus 91 klGEA-KssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~ 169 (639)
T KOG1130|consen 91 KLGEA-KSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTS 169 (639)
T ss_pred hhccc-cccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHH
Confidence 12223 5667899999999999999999888775432 22456789999999988875
Q ss_pred -hHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC--
Q 005603 502 -PKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYS-- 578 (688)
Q Consensus 502 -~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 578 (688)
++.|+++|..-+++.... .+......++-++|+.|.-+|+|+.|+..-+.-+.+....
T Consensus 170 al~~Av~fy~eNL~l~~~l-------------------gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD 230 (639)
T KOG1130|consen 170 ALENAVKFYMENLELSEKL-------------------GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD 230 (639)
T ss_pred HHHHHHHHHHHHHHHHHHh-------------------hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh
Confidence 233444555444443332 3333346788899999999999999999888777665432
Q ss_pred ----hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----C--CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC--
Q 005603 579 ----PGSWHTTGMLFEAQSQYKEALVSFSISLAIE----P--DYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEP-- 646 (688)
Q Consensus 579 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p--~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p-- 646 (688)
..++.++|.++.-.|+++.|+++|++.+.+. . ..+..-+.+|..|.-...+. +|+.++.+-+.+..
T Consensus 231 rAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~--kAI~Yh~rHLaIAqeL 308 (639)
T KOG1130|consen 231 RAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQ--KAITYHQRHLAIAQEL 308 (639)
T ss_pred HHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 3468899999999999999999999876542 2 23567788999999999988 99999998776532
Q ss_pred ----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 005603 647 ----TNHDAWMNLGLISKMEGSLQQAADYFQAAYEL 678 (688)
Q Consensus 647 ----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 678 (688)
....+++.||..+-..|..++|+.+.++.+++
T Consensus 309 ~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 309 EDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 34578899999999999999999999888764
No 101
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=1.2e-11 Score=111.24 Aligned_cols=181 Identities=20% Similarity=0.199 Sum_probs=162.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccc
Q 005603 451 RGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKT 530 (688)
Q Consensus 451 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 530 (688)
..+-....+....|+.+.|..++++..+..| .+..+....|..+...|++++|+++|+..++-+|.
T Consensus 53 ~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp--~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt------------ 118 (289)
T KOG3060|consen 53 TLYEQVFIAALDTGRDDLAQKCINQLRDRFP--GSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPT------------ 118 (289)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhCC--CChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcc------------
Confidence 4445566677888999999999999999998 78889999999999999999999999999988665
Q ss_pred cccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005603 531 KYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEP 610 (688)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 610 (688)
+..++-....+...+|+.-+|++.+.+.++.++.+.++|..++.+|...|+|++|.-++++++-+.|
T Consensus 119 -------------~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P 185 (289)
T KOG3060|consen 119 -------------DTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQP 185 (289)
T ss_pred -------------hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCC
Confidence 6777778888888999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005603 611 DYIPSIISTAEILMKLGRQS-MPIARSFLMNALRLEPTNHDAWMNLGLI 658 (688)
Q Consensus 611 ~~~~~~~~la~~~~~~g~~~-~~~A~~~~~~al~~~p~~~~~~~~lg~~ 658 (688)
.++..+..+|.+++-+|..+ ++-|.++|.++++++|.+..+++.+-.+
T Consensus 186 ~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 186 FNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 99999999999998887654 4589999999999999888888765443
No 102
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.49 E-value=2.2e-12 Score=139.93 Aligned_cols=139 Identities=11% Similarity=-0.018 Sum_probs=134.0
Q ss_pred CcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005603 541 KNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTA 620 (688)
Q Consensus 541 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 620 (688)
.+.++.++..||.+....|.+++|...++.++++.|++..++..++.++.+++++++|+..+++++..+|+++.+++.+|
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 34479999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccCC
Q 005603 621 EILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKLS 681 (688)
Q Consensus 621 ~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 681 (688)
.++.++|+++ +|+..|++++..+|+++.+|..+|.++...|+.++|...|++|++...+
T Consensus 162 ~~l~~~g~~~--~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 162 KSWDEIGQSE--QADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHhcchH--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 9999999999 9999999999999999999999999999999999999999999987543
No 103
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.48 E-value=1.1e-12 Score=125.21 Aligned_cols=300 Identities=16% Similarity=0.121 Sum_probs=225.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHH
Q 005603 296 HLTYALSVTGQFELLAEYVEQALPGIYNRA----ERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAE 371 (688)
Q Consensus 296 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 371 (688)
.-|.-+++.|++...+..|+.+++.-.++. .++..||..|+-.++|++|+++-..-+...+.+. ..-.. +.
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lg---dklGE--AK 96 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLG---DKLGE--AK 96 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhc---chhcc--cc
Confidence 356778899999999999999999887775 4677899999999999999987665442222222 11222 45
Q ss_pred HHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHcCC---------------
Q 005603 372 AYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNER------EDPEMMYYLGLEHAVQRN--------------- 430 (688)
Q Consensus 372 ~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~--------------- 430 (688)
..-.||..+-..|.+ ++|+.+..+-+.+.. ....++|++|.+|...|+
T Consensus 97 ssgNLGNtlKv~G~f-----------deA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ 165 (639)
T KOG1130|consen 97 SSGNLGNTLKVKGAF-----------DEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNA 165 (639)
T ss_pred ccccccchhhhhccc-----------chHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccH
Confidence 667889999999999 999988877764432 236789999999988774
Q ss_pred -----HHHHHHHHHHHHhhcCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC----CcHHHHHHHHHHH
Q 005603 431 -----VEAAFDYAIMYSDTVAGNS-----GRGWKLLALILSADQRLKDAQSIVDFSLDEAGSM----DQLELLRLKAVLQ 496 (688)
Q Consensus 431 -----~~~A~~~~~~~l~~~p~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~~la~~~ 496 (688)
++.|.++|..-+++..... ..++-.+|..|+-.|+|+.|+..-+.-+.+.... ..-.++.++|.++
T Consensus 166 ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~h 245 (639)
T KOG1130|consen 166 EVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCH 245 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhh
Confidence 3456666666665532211 1456678888999999999999888766554321 2345678899999
Q ss_pred HHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 005603 497 IAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEF 576 (688)
Q Consensus 497 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 576 (688)
.-.|+++.|++.|+..+.+.-. +..+...+...+.+|+.|.-..++++|+.++++-+.+..
T Consensus 246 iflg~fe~A~ehYK~tl~LAie-------------------lg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 246 IFLGNFELAIEHYKLTLNLAIE-------------------LGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred hhhcccHhHHHHHHHHHHHHHH-------------------hcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998887544 244555688889999999999999999999998877643
Q ss_pred ------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CC-CHHHHHHHHHHHHHhCCCC
Q 005603 577 ------YSPGSWHTTGMLFEAQSQYKEALVSFSISLAIE-----PD-YIPSIISTAEILMKLGRQS 630 (688)
Q Consensus 577 ------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~-~~~~~~~la~~~~~~g~~~ 630 (688)
....+++.+|..+...|..++|+.+.++.+++. |. ...+..++...-...|..+
T Consensus 307 eL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 307 ELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQED 372 (639)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCc
Confidence 235678899999999999999999888877652 22 3456677777777777765
No 104
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.47 E-value=6.3e-12 Score=136.94 Aligned_cols=231 Identities=15% Similarity=0.035 Sum_probs=182.3
Q ss_pred HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-----
Q 005603 409 LNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSM----- 483 (688)
Q Consensus 409 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----- 483 (688)
..+|.+..++..++..+...+++++|+..++..++..|+.. ..++.+|.++.+.+++.++..+ .++...+..
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i-~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSI-SALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcce-ehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 45789999999999999999999999999999999999999 9999999999999998887776 666555410
Q ss_pred ------------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHH
Q 005603 484 ------------DQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDL 551 (688)
Q Consensus 484 ------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 551 (688)
.+-.+++.+|.+|-.+|+.++|...|+++++.+|+ ++.++.++
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-------------------------n~~aLNn~ 156 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-------------------------NPEIVKKL 156 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-------------------------cHHHHHHH
Confidence 22367888888888888888888888888888655 68888888
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH--------HHH---
Q 005603 552 ATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSII--------STA--- 620 (688)
Q Consensus 552 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--------~la--- 620 (688)
|..|... +.++|+.++.+++.. +...+++.++...+.+.+..+|++...+. .++
T Consensus 157 AY~~ae~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~ 221 (906)
T PRK14720 157 ATSYEEE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTR 221 (906)
T ss_pred HHHHHHh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccch
Confidence 8888888 888888888888765 45556777777777777777777655422 122
Q ss_pred ---------HHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------------------CCHHHHHHH
Q 005603 621 ---------EILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKME--------------------GSLQQAADY 671 (688)
Q Consensus 621 ---------~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------------------g~~~~A~~~ 671 (688)
..|...++++ +++.+++.+++.+|+|..+...++.+|... ..+..|+..
T Consensus 222 ~~~~~~~l~~~y~~~~~~~--~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~ 299 (906)
T PRK14720 222 LVGLLEDLYEPYKALEDWD--EVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIAD 299 (906)
T ss_pred hHHHHHHHHHHHhhhhhhh--HHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHH
Confidence 5667778888 999999999999999999999999888632 235667777
Q ss_pred HHHHHcccCCCCC
Q 005603 672 FQAAYELKLSAPV 684 (688)
Q Consensus 672 ~~~al~l~p~~~~ 684 (688)
|++-+..+|++-+
T Consensus 300 fek~i~f~~G~yv 312 (906)
T PRK14720 300 FEKNIVFDTGNFV 312 (906)
T ss_pred HHHHeeecCCCEE
Confidence 7777777666544
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.47 E-value=4.6e-10 Score=131.18 Aligned_cols=321 Identities=16% Similarity=0.075 Sum_probs=233.9
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCC---------CHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHh
Q 005603 289 WDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYN---------RAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQ 359 (688)
Q Consensus 289 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 359 (688)
.++......+.++...|++++|...+.++....+. .......++.++...|++++|...+++++ .
T Consensus 407 ~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al------~ 480 (903)
T PRK04841 407 ENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELAL------A 480 (903)
T ss_pred cCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH------h
Confidence 34555667788888999999999999887543221 22445567888999999999999999987 2
Q ss_pred hhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCCHHH
Q 005603 360 STTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNERED------PEMMYYLGLEHAVQRNVEA 433 (688)
Q Consensus 360 ~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~ 433 (688)
..+.........+...+|.++...|++ ++|...+++++...... ..++..+|.++...|++++
T Consensus 481 ~~~~~~~~~~~~a~~~lg~~~~~~G~~-----------~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~ 549 (903)
T PRK04841 481 ELPLTWYYSRIVATSVLGEVHHCKGEL-----------ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQA 549 (903)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHcCCH-----------HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 122222222345677889999999999 99999999998653321 2456778999999999999
Q ss_pred HHHHHHHHHhhcCC-----Cc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC---CcHHHHHHHHHHHHHcCChH
Q 005603 434 AFDYAIMYSDTVAG-----NS--GRGWKLLALILSADQRLKDAQSIVDFSLDEAGSM---DQLELLRLKAVLQIAQEQPK 503 (688)
Q Consensus 434 A~~~~~~~l~~~p~-----~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~la~~~~~~g~~~ 503 (688)
|...+++++..... .+ ...+..+|.++...|++++|...+.+++...... .....+..++.++...|+++
T Consensus 550 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~ 629 (903)
T PRK04841 550 AYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLD 629 (903)
T ss_pred HHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHH
Confidence 99999999876221 11 1345578889999999999999999998753311 23556677899999999999
Q ss_pred HHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcch--HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChh-
Q 005603 504 QAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLE--IATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPG- 580 (688)
Q Consensus 504 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~- 580 (688)
+|...+.++....+... .... ..........+...|+.+.|...+.......+....
T Consensus 630 ~A~~~l~~a~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 689 (903)
T PRK04841 630 NARRYLNRLENLLGNGR--------------------YHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHF 689 (903)
T ss_pred HHHHHHHHHHHHHhccc--------------------ccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchh
Confidence 99999999988644310 0000 111111234455688999999998776653322221
Q ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC
Q 005603 581 ---SWHTTGMLFEAQSQYKEALVSFSISLAIE------PDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTN 648 (688)
Q Consensus 581 ---~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~ 648 (688)
.+..++.++...|++++|...+++++... +....++..+|.++...|+.+ +|...+.+++.+....
T Consensus 690 ~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~--~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 690 LQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKS--EAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHhCcc
Confidence 24678899999999999999999998752 123457888999999999998 9999999999986543
No 106
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.46 E-value=1e-11 Score=135.30 Aligned_cols=291 Identities=11% Similarity=-0.007 Sum_probs=174.3
Q ss_pred HHHHhhhcCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHh
Q 005603 280 EKVASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQ 359 (688)
Q Consensus 280 ~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 359 (688)
|..+..-.|.+..++..|...+...|++++|+..++..+...|+....++.+|.++++.+++.++..+ .++ .
T Consensus 20 r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l------~ 91 (906)
T PRK14720 20 RADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLI------D 91 (906)
T ss_pred hcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhh------h
Confidence 44455566889999999999999999999999999999999999999999999999999998888766 444 1
Q ss_pred hhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005603 360 STTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAI 439 (688)
Q Consensus 360 ~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 439 (688)
....+. + -.++.++...+...+.+..+++.+|.+|-+.|+.++|...++
T Consensus 92 ~~~~~~-------------------~------------~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~ye 140 (906)
T PRK14720 92 SFSQNL-------------------K------------WAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWE 140 (906)
T ss_pred hccccc-------------------c------------hhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHH
Confidence 111111 0 122222222222234444455555555555555555555555
Q ss_pred HHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Q 005603 440 MYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQ 519 (688)
Q Consensus 440 ~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 519 (688)
++++.+|.++ .++.++|..+... +.++|+.++.+++.. +...+++.++.+++.+.+...|.+
T Consensus 141 r~L~~D~~n~-~aLNn~AY~~ae~-dL~KA~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d 202 (906)
T PRK14720 141 RLVKADRDNP-EIVKKLATSYEEE-DKEKAITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDD 202 (906)
T ss_pred HHHhcCcccH-HHHHHHHHHHHHh-hHHHHHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCccc
Confidence 5555555555 5555555555555 555555555554433 223334444444444444444443
Q ss_pred HHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHH
Q 005603 520 RELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEAL 599 (688)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 599 (688)
.+.+....+ .+... .........+.-+-..|...++|++++..++.+++.+|.+..+...++.+|. +.|.. -
T Consensus 203 ~d~f~~i~~----ki~~~-~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~ 274 (906)
T PRK14720 203 FDFFLRIER----KVLGH-REFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-H 274 (906)
T ss_pred chHHHHHHH----HHHhh-hccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-c
Confidence 222111100 00000 0011135566667788888999999999999999999999999999998887 33333 3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC
Q 005603 600 VSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTN 648 (688)
Q Consensus 600 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~ 648 (688)
..++..+++.. ...++..+..++..|++.+..++.+
T Consensus 275 ~~~ee~l~~s~-------------l~~~~~~~~~~i~~fek~i~f~~G~ 310 (906)
T PRK14720 275 SLLEDYLKMSD-------------IGNNRKPVKDCIADFEKNIVFDTGN 310 (906)
T ss_pred chHHHHHHHhc-------------cccCCccHHHHHHHHHHHeeecCCC
Confidence 44444443211 1111111226777777777766654
No 107
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.46 E-value=8.9e-10 Score=106.10 Aligned_cols=297 Identities=13% Similarity=0.008 Sum_probs=229.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHH
Q 005603 294 MDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAY 373 (688)
Q Consensus 294 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 373 (688)
...-|..-.-.|+|..|.+...+.-+..+...-.+..-+...-.+|+++.|-.++.++- + ..+++ . ..+.
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaa------e-~~~~~-~--l~v~ 156 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAA------E-LAGDD-T--LAVE 156 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHh------c-cCCCc-h--HHHH
Confidence 34456666778999999999999877777666777777889999999999999999985 1 11222 2 4667
Q ss_pred HHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHH-
Q 005603 374 KFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRG- 452 (688)
Q Consensus 374 ~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~- 452 (688)
...+.....++++ ..|..-..+++...|.++.++.....+|...|++........+.-+..--+..+.
T Consensus 157 ltrarlll~~~d~-----------~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~ 225 (400)
T COG3071 157 LTRARLLLNRRDY-----------PAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA 225 (400)
T ss_pred HHHHHHHHhCCCc-----------hhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH
Confidence 7888999999999 9999999999999999999999999999999999999999998877654333111
Q ss_pred -HHHHHH--HHHHcCCHHHHHH---HHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhc
Q 005603 453 -WKLLAL--ILSADQRLKDAQS---IVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKN 526 (688)
Q Consensus 453 -~~~la~--~~~~~~~~~~A~~---~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 526 (688)
+-..+. ++.+..+-..+.. +++..-..-. .++.+...++.-+..+|+.++|.+..+++++..-+
T Consensus 226 ~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr--~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D-------- 295 (400)
T COG3071 226 RLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLR--NDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD-------- 295 (400)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHhccHHhh--cChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC--------
Confidence 111111 1122222222222 3333222222 56778888999999999999999999999987332
Q ss_pred cccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005603 527 FHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISL 606 (688)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 606 (688)
+.....+ -...-+++..=++..++.++..|+++..+..+|.++.+.+.|.+|..+|+.++
T Consensus 296 ------------------~~L~~~~--~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl 355 (400)
T COG3071 296 ------------------PRLCRLI--PRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAAL 355 (400)
T ss_pred ------------------hhHHHHH--hhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3322111 22356788888999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 005603 607 AIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRL 644 (688)
Q Consensus 607 ~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~ 644 (688)
+..|+ ...+..+|.++.+.|+.. +|...+++++..
T Consensus 356 ~~~~s-~~~~~~la~~~~~~g~~~--~A~~~r~e~L~~ 390 (400)
T COG3071 356 KLRPS-ASDYAELADALDQLGEPE--EAEQVRREALLL 390 (400)
T ss_pred hcCCC-hhhHHHHHHHHHHcCChH--HHHHHHHHHHHH
Confidence 98775 567888999999999998 999999998854
No 108
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=2.8e-11 Score=111.05 Aligned_cols=178 Identities=17% Similarity=0.110 Sum_probs=121.8
Q ss_pred HhhhcC--CcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhh
Q 005603 283 ASKEME--WDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQS 360 (688)
Q Consensus 283 ~l~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 360 (688)
.+++.| ++.......|...++.|+++.|++-|+.+++..--++-.-+++|.++++.|+++.|+++..+++ .+.+..
T Consensus 134 LveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIi--eRG~r~ 211 (459)
T KOG4340|consen 134 LVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEII--ERGIRQ 211 (459)
T ss_pred HHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHH--Hhhhhc
Confidence 344455 5677888899999999999999999999999988889999999999999999999999999987 111110
Q ss_pred hc----------------ccc----hhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHc--CCCCHHHH
Q 005603 361 TT----------------SQK----EHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLN--EREDPEMM 418 (688)
Q Consensus 361 ~~----------------~~~----~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 418 (688)
-+ +++ .+-...++...+.++.+.+++ +.|.+.+..+--. ..-+|..+
T Consensus 212 HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~-----------eAA~eaLtDmPPRaE~elDPvTL 280 (459)
T KOG4340|consen 212 HPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNY-----------EAAQEALTDMPPRAEEELDPVTL 280 (459)
T ss_pred CCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccH-----------HHHHHHhhcCCCcccccCCchhh
Confidence 00 000 111134455555566666666 6666555433210 11245666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005603 419 YYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDF 475 (688)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 475 (688)
.+++..-. .+++.+...-++-.+.++|-.+ +.+-++-.++.+..-|+-|-+++-.
T Consensus 281 HN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~-ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 281 HNQALMNM-DARPTEGFEKLQFLLQQNPFPP-ETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHHhcc-cCCccccHHHHHHHHhcCCCCh-HHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 77665543 4556666667777778888666 8888888888888878777766543
No 109
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.45 E-value=7.2e-12 Score=114.09 Aligned_cols=178 Identities=14% Similarity=0.046 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHH
Q 005603 431 VEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYR 510 (688)
Q Consensus 431 ~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 510 (688)
...+...+-+....+|++. .+ ..++..+...|+-+.+..+..++...+| .+..++...|...+..|++..|+..++
T Consensus 49 ~~~a~~al~~~~~~~p~d~-~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~--~d~~ll~~~gk~~~~~g~~~~A~~~~r 124 (257)
T COG5010 49 TQGAAAALGAAVLRNPEDL-SI-AKLATALYLRGDADSSLAVLQKSAIAYP--KDRELLAAQGKNQIRNGNFGEAVSVLR 124 (257)
T ss_pred hhHHHHHHHHHHhcCcchH-HH-HHHHHHHHhcccccchHHHHhhhhccCc--ccHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 3335555556666777776 66 7777778888888877777777777777 566777777788888888888888888
Q ss_pred HHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 005603 511 ILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFE 590 (688)
Q Consensus 511 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 590 (688)
++....|+ ++++|..+|.+|.+.|++++|...|.+++++.|+++.+..++|..+.
T Consensus 125 kA~~l~p~-------------------------d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~ 179 (257)
T COG5010 125 KAARLAPT-------------------------DWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLL 179 (257)
T ss_pred HHhccCCC-------------------------ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHH
Confidence 87777444 67788888888888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 005603 591 AQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLM 639 (688)
Q Consensus 591 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~ 639 (688)
-.|+++.|..++..+....+.+..+..+++.+....|++. +|.....
T Consensus 180 L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~--~A~~i~~ 226 (257)
T COG5010 180 LRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFR--EAEDIAV 226 (257)
T ss_pred HcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChH--HHHhhcc
Confidence 8888888888888777777777777788888888888877 6666543
No 110
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.45 E-value=6e-12 Score=116.17 Aligned_cols=124 Identities=11% Similarity=0.131 Sum_probs=96.5
Q ss_pred cCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 005603 499 QEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYS 578 (688)
Q Consensus 499 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 578 (688)
.++.++++..+++++..+|+ +...|..+|.+|...|++++|+.+|++++.+.|++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-------------------------~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~ 106 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-------------------------NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN 106 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 55667777777777777555 67788888888888888888888888888888888
Q ss_pred hhHHHHHHHHH-HHcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCH
Q 005603 579 PGSWHTTGMLF-EAQSQ--YKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNH 649 (688)
Q Consensus 579 ~~~~~~lg~~~-~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~ 649 (688)
+.++..+|.++ ...|+ +++|...++++++.+|+++.++..+|..+...|+++ +|+.+++++++..|.+.
T Consensus 107 ~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~--~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 107 AELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYA--QAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCCc
Confidence 88888888764 56666 478888888888888888888888888888888877 88888888888776543
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.44 E-value=1.7e-11 Score=125.91 Aligned_cols=295 Identities=15% Similarity=0.185 Sum_probs=224.8
Q ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHH
Q 005603 322 YNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEAL 401 (688)
Q Consensus 322 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~ 401 (688)
|........++..+...|-...|+.++++. ..|-....||...|+. .+|.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-------------------emw~~vi~CY~~lg~~-----------~kae 444 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-------------------EMWDPVILCYLLLGQH-----------GKAE 444 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-------------------HHHHHHHHHHHHhccc-----------chHH
Confidence 444566678999999999999999999887 4556667888888988 9999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 005603 402 ESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAG 481 (688)
Q Consensus 402 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 481 (688)
.+..+-++ .|.++..|..+|.+.....-|++|.++.+.. +. .+...+|......++|.++..+++..++++|
T Consensus 445 ei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~------sa-rA~r~~~~~~~~~~~fs~~~~hle~sl~~np 516 (777)
T KOG1128|consen 445 EINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYI------SA-RAQRSLALLILSNKDFSEADKHLERSLEINP 516 (777)
T ss_pred HHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhh------hH-HHHHhhccccccchhHHHHHHHHHHHhhcCc
Confidence 99888888 6778888888888777776666666665543 22 6667778878889999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCCh
Q 005603 482 SMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSL 561 (688)
Q Consensus 482 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 561 (688)
-....|+.+|.+..+.+++..|.+.|...+...|+ +..+|.+++..|...++-
T Consensus 517 --lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd-------------------------~~eaWnNls~ayi~~~~k 569 (777)
T KOG1128|consen 517 --LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD-------------------------NAEAWNNLSTAYIRLKKK 569 (777)
T ss_pred --cchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC-------------------------chhhhhhhhHHHHHHhhh
Confidence 89999999999999999999999999999999766 799999999999999999
Q ss_pred hHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHh-----CCCChHHH
Q 005603 562 PDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEP--DYIPSIISTAEILMKL-----GRQSMPIA 634 (688)
Q Consensus 562 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~-----g~~~~~~A 634 (688)
.+|...++++++.+-.++.+|-+.-.+....|.+++|++.|.+.+.+.. .+......+.....+. ++-. .+
T Consensus 570 ~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~~~~d~s~de~--~~ 647 (777)
T KOG1128|consen 570 KRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLEGMTDESGDEA--TG 647 (777)
T ss_pred HHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHhhccccccchh--hh
Confidence 9999999999999988999999999999999999999999999887632 2334444333333222 2222 22
Q ss_pred HHH-----HHHHHHhCCCCHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHcccCCCC
Q 005603 635 RSF-----LMNALRLEPTNHDAWMNLGLIS-----KMEGSLQQAADYFQAAYELKLSAP 683 (688)
Q Consensus 635 ~~~-----~~~al~~~p~~~~~~~~lg~~~-----~~~g~~~~A~~~~~~al~l~p~~~ 683 (688)
... +-+.+..--+.+..|...|..+ .+.+..++|.+...+........+
T Consensus 648 ~k~~~kelmg~~~~qv~~s~~~wrL~a~l~~~~~~ek~~~~eka~~~l~k~~~~~s~~~ 706 (777)
T KOG1128|consen 648 LKGKLKELLGKVLSQVTNSPETWRLYALLYGNGSSEKLDENEKAYRALSKAYKCDTGSN 706 (777)
T ss_pred hhHHHHHHHHHHHHHHhCchhhhHhHhhhccccchhcccccHHHHhhhhhCcccccccc
Confidence 222 2223333344667776666533 233445666666666655544433
No 112
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.43 E-value=1e-11 Score=113.17 Aligned_cols=180 Identities=15% Similarity=0.060 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005603 396 FQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDF 475 (688)
Q Consensus 396 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 475 (688)
+...+...+-+....+|++..+ ..++..+...|+-+.+..+..++....|.+. .....+|......|++..|+..+.+
T Consensus 48 q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~-~ll~~~gk~~~~~g~~~~A~~~~rk 125 (257)
T COG5010 48 QTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDR-ELLAAQGKNQIRNGNFGEAVSVLRK 125 (257)
T ss_pred hhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccH-HHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3344555666666777777777 7777788888888887777777777777776 6666677778888888888888888
Q ss_pred HHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHH
Q 005603 476 SLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIY 555 (688)
Q Consensus 476 al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 555 (688)
+....| +++.+|..+|.+|.+.|++++|...|.+++++.|+ ++.+..++|..|
T Consensus 126 A~~l~p--~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-------------------------~p~~~nNlgms~ 178 (257)
T COG5010 126 AARLAP--TDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-------------------------EPSIANNLGMSL 178 (257)
T ss_pred HhccCC--CChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-------------------------CchhhhhHHHHH
Confidence 888777 77888888888888888888888888888887665 577778888888
Q ss_pred HHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 005603 556 MKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSI 604 (688)
Q Consensus 556 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 604 (688)
.-.|+++.|..++..+....+.+..+..+++.+...+|++++|...-.+
T Consensus 179 ~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 179 LLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 8888888888888887777777777788888888888888877766544
No 113
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.43 E-value=2e-12 Score=112.88 Aligned_cols=116 Identities=16% Similarity=0.091 Sum_probs=85.8
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Q 005603 567 CTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEP 646 (688)
Q Consensus 567 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p 646 (688)
.+++++..+|++......+|..+...|++++|+..+++++..+|+++.++..+|.++...|+++ +|+..+++++..+|
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~--~A~~~~~~~~~~~p 82 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYE--EAIDAYALAAALDP 82 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcCC
Confidence 4666777777777777777777777777777777777777777777777777777777777776 77777777777777
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccCCCCC
Q 005603 647 TNHDAWMNLGLISKMEGSLQQAADYFQAAYELKLSAPV 684 (688)
Q Consensus 647 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 684 (688)
+++..++.+|.++...|++++|+..|++++++.|+++.
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 77777777777777777777777777777777776654
No 114
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.43 E-value=7.5e-08 Score=98.02 Aligned_cols=424 Identities=12% Similarity=0.050 Sum_probs=280.4
Q ss_pred HHHHHhHHHHHHcCCHHHHHHHHHHhhCCCCCCChhhHHHHHHHHH-------HHHHhcCccCCC-CC-ccccCCCccCC
Q 005603 195 KALELLPHLWIKAGLLEEAIIAYRRALVKPWNLDPKKVASVQRDLA-------VTLLYGGVEARL-PP-ELKVWGPIAPK 265 (688)
Q Consensus 195 ~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~~~~~~a-------~~ll~~~~~~~~-~~-~~~~~~~~~~~ 265 (688)
.-...|+.-|.+.|.++.|...|+++++.-... ...+.+-..++ .+.+.-..+.+. +. ...+. ...
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tv--rDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~---~~~ 323 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTVMTV--RDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLE---LHM 323 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhheeh--hhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHH---HHH
Confidence 445567788999999999999999999862111 11222211111 111110000000 00 00000 000
Q ss_pred CchHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhcC-CCCCC-----HHHHHHHHHHHHHcC
Q 005603 266 DNVEEAILLLLILMEKVASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALP-GIYNR-----AERWYILALCYSAAG 339 (688)
Q Consensus 266 ~~~eea~~~l~~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~-~~p~~-----~~~~~~la~~~~~~g 339 (688)
-.++.-+..--+.+..+.+.++|.+..-|.... -+..|+..+-+..|.++++ .+|.. ...|..+|..|...|
T Consensus 324 a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~ 401 (835)
T KOG2047|consen 324 ARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNG 401 (835)
T ss_pred HHHHHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcC
Confidence 000111111111145678889999988887655 4456788888888877764 55543 378999999999999
Q ss_pred CcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCC------
Q 005603 340 QNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNERE------ 413 (688)
Q Consensus 340 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------ 413 (688)
+.+.|..+|.+++ . .+-......+.+|...|..-....++ +.|..+.+++...-..
T Consensus 402 ~l~~aRvifeka~------~-V~y~~v~dLa~vw~~waemElrh~~~-----------~~Al~lm~~A~~vP~~~~~~~y 463 (835)
T KOG2047|consen 402 DLDDARVIFEKAT------K-VPYKTVEDLAEVWCAWAEMELRHENF-----------EAALKLMRRATHVPTNPELEYY 463 (835)
T ss_pred cHHHHHHHHHHhh------c-CCccchHHHHHHHHHHHHHHHhhhhH-----------HHHHHHHHhhhcCCCchhhhhh
Confidence 9999999999996 1 12222233467788888777777777 9999999998754211
Q ss_pred ------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 005603 414 ------------DPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAG 481 (688)
Q Consensus 414 ------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 481 (688)
...+|..++......|-++.....|++++++.--.| ....+.|..+....-++++.+.|++.+.+.+
T Consensus 464 d~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTP-qii~NyAmfLEeh~yfeesFk~YErgI~LFk 542 (835)
T KOG2047|consen 464 DNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATP-QIIINYAMFLEEHKYFEESFKAYERGISLFK 542 (835)
T ss_pred cCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhhHHHHHHHHHHHcCCccCC
Confidence 245778888888999999999999999999998888 9999999999999999999999999999987
Q ss_pred CCCcHHHHHHHHHHH---HHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHc
Q 005603 482 SMDQLELLRLKAVLQ---IAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKL 558 (688)
Q Consensus 482 ~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 558 (688)
-+...++|...-.-+ ..--..+.|...|+++++.+|.. ..-.++...+..-...
T Consensus 543 ~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~-----------------------~aKtiyLlYA~lEEe~ 599 (835)
T KOG2047|consen 543 WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPE-----------------------HAKTIYLLYAKLEEEH 599 (835)
T ss_pred CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH-----------------------HHHHHHHHHHHHHHHh
Confidence 556666665443333 33456899999999999987642 1234566667777778
Q ss_pred CChhHHHHHHHHHHhcCCCC--hhHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHhCCCChHH
Q 005603 559 GSLPDAEICTEKAKSIEFYS--PGSWHTT-GMLFEAQSQYKEALVSFSISLAIEPDYI--PSIISTAEILMKLGRQSMPI 633 (688)
Q Consensus 559 g~~~~A~~~~~~al~~~p~~--~~~~~~l-g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~~~ 633 (688)
|--..|+..|+++-..-+.. ...|+.. ..+...-| ...-...|++|++.-|+.- ..-...+..-.++|..+ .
T Consensus 600 GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yG-v~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEid--R 676 (835)
T KOG2047|consen 600 GLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYG-VPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEID--R 676 (835)
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhC-CcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHH--H
Confidence 98999999999976644321 1112111 11111112 2334567888888877653 34556788888999998 9
Q ss_pred HHHHHHHHHHhC-CC-CHHHHHHHHHHHHHcCCHHHHHH
Q 005603 634 ARSFLMNALRLE-PT-NHDAWMNLGLISKMEGSLQQAAD 670 (688)
Q Consensus 634 A~~~~~~al~~~-p~-~~~~~~~lg~~~~~~g~~~~A~~ 670 (688)
|+..|.-+-++. |. +.+.|..--..-.+.|+-+.-.+
T Consensus 677 ARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~ke 715 (835)
T KOG2047|consen 677 ARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKE 715 (835)
T ss_pred HHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHH
Confidence 999998888764 43 45667666666777787443333
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.40 E-value=3.8e-11 Score=130.39 Aligned_cols=141 Identities=13% Similarity=0.018 Sum_probs=108.8
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhH
Q 005603 484 DQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPD 563 (688)
Q Consensus 484 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 563 (688)
...++++.+|.+....|.+++|...++.+++..|+ +..++..++.++.+.+++++
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-------------------------~~~a~~~~a~~L~~~~~~ee 138 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-------------------------SSEAFILMLRGVKRQQGIEA 138 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-------------------------cHHHHHHHHHHHHHhccHHH
Confidence 56777777888888888888888888877777655 57777777888888888888
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 005603 564 AEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALR 643 (688)
Q Consensus 564 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~ 643 (688)
|...+++++..+|+++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|+.+ +|...|++++.
T Consensus 139 A~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~--~A~~~~~~a~~ 216 (694)
T PRK15179 139 GRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALW--RARDVLQAGLD 216 (694)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH--HHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888887777777778888888888888877 78888888777
Q ss_pred hCCCCHHH
Q 005603 644 LEPTNHDA 651 (688)
Q Consensus 644 ~~p~~~~~ 651 (688)
...+-...
T Consensus 217 ~~~~~~~~ 224 (694)
T PRK15179 217 AIGDGARK 224 (694)
T ss_pred hhCcchHH
Confidence 65544443
No 116
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.39 E-value=9.2e-12 Score=115.54 Aligned_cols=120 Identities=17% Similarity=0.186 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005603 545 IATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILM 624 (688)
Q Consensus 545 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 624 (688)
++-+-.-|.-..+.++|.+|+..|.+|++++|.++..|.+.+.+|.++|.++.|++.++.++.++|.+..+|..+|.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 44455556666666777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 005603 625 KLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQ 666 (688)
Q Consensus 625 ~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 666 (688)
.+|++. +|++.|++++.++|++...+.+|..+-...+...
T Consensus 161 ~~gk~~--~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 161 ALGKYE--EAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ccCcHH--HHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 777766 6777777777777777666666666655555443
No 117
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.35 E-value=2e-11 Score=119.29 Aligned_cols=259 Identities=17% Similarity=0.119 Sum_probs=124.0
Q ss_pred HHHHhcCCHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHH
Q 005603 299 YALSVTGQFELLAEYVEQALPGIY-NRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLG 377 (688)
Q Consensus 299 ~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg 377 (688)
.-++-.|+|..++.-.+ ....++ ...+....+..+++.+|+++..+.-+... ..|. ..+...++
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~-----------~~~~---l~av~~la 73 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS-----------SSPE---LQAVRLLA 73 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT-----------SSCC---CHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC-----------CChh---HHHHHHHH
Confidence 34556678888776666 223333 23456667777788888776554333222 1121 23344444
Q ss_pred HHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHH
Q 005603 378 ICYGNVARKSISDTERVFFQKEALESLNCAFLNE--REDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKL 455 (688)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 455 (688)
..+....+. +.++..++..+... +.++......|.++...|++++|++.+.+. ++. +....
T Consensus 74 ~y~~~~~~~-----------e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~l-E~~al 136 (290)
T PF04733_consen 74 EYLSSPSDK-----------ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSL-ELLAL 136 (290)
T ss_dssp HHHCTSTTH-----------HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCH-HHHHH
T ss_pred HHHhCccch-----------HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----Ccc-cHHHH
Confidence 444433333 44555444433221 122334444555555666666666555432 233 55555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhcccccccccc
Q 005603 456 LALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITS 535 (688)
Q Consensus 456 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 535 (688)
...++...++++.|.+.++.+.+.+. +...+....+.+....|.
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~e--D~~l~qLa~awv~l~~g~---------------------------------- 180 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQIDE--DSILTQLAEAWVNLATGG---------------------------------- 180 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCSC--CHHHHHHHHHHHHHHHTT----------------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHhCc----------------------------------
Confidence 55566666666666666655554443 333333333333333331
Q ss_pred ccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 005603 536 EAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPS 615 (688)
Q Consensus 536 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 615 (688)
+.+.+|.-.|++.....+.++..++.++.++..+|+|++|...+.+++..+|+++.+
T Consensus 181 -----------------------e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~ 237 (290)
T PF04733_consen 181 -----------------------EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDT 237 (290)
T ss_dssp -----------------------TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHH
T ss_pred -----------------------hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHH
Confidence 135555555555444444455555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCH
Q 005603 616 IISTAEILMKLGRQSMPIARSFLMNALRLEPTNH 649 (688)
Q Consensus 616 ~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~ 649 (688)
+.+++.+....|+.. +.+.+++.+....+|+++
T Consensus 238 LaNliv~~~~~gk~~-~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 238 LANLIVCSLHLGKPT-EAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHHTT-TC-HHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHhCCCh-hHHHHHHHHHHHhCCCCh
Confidence 555555555555553 134444444444555544
No 118
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.34 E-value=5.8e-12 Score=123.00 Aligned_cols=250 Identities=15% Similarity=0.078 Sum_probs=189.6
Q ss_pred HHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005603 398 KEALESLNCAFLNER-EDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFS 476 (688)
Q Consensus 398 ~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 476 (688)
.+++.... ....++ ........+.+.+..+|+++..+.-... ..+... .+...++..+...++.+.++..++..
T Consensus 18 ~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l-~av~~la~y~~~~~~~e~~l~~l~~~ 92 (290)
T PF04733_consen 18 QQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPEL-QAVRLLAEYLSSPSDKESALEELKEL 92 (290)
T ss_dssp HHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCC-HHHHHHHHHHCTSTTHHCHHHHHHHC
T ss_pred HHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhH-HHHHHHHHHHhCccchHHHHHHHHHH
Confidence 77776655 222333 2345677889999999998877654433 223333 77778887776666777777777665
Q ss_pred HhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHH
Q 005603 477 LDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYM 556 (688)
Q Consensus 477 l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 556 (688)
+.......+..+....|.++...|++++|++.+.+. .+.+.......+|.
T Consensus 93 ~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------------------------------~~lE~~al~Vqi~L 142 (290)
T PF04733_consen 93 LADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------------------------------GSLELLALAVQILL 142 (290)
T ss_dssp CCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------------------------------TCHHHHHHHHHHHH
T ss_pred HHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------------------------------CcccHHHHHHHHHH
Confidence 544321135566777788888999999999888654 14677778889999
Q ss_pred HcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHH
Q 005603 557 KLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQS--QYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIA 634 (688)
Q Consensus 557 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A 634 (688)
..++++.|.+.++.+.+.+.+..-+....+++....| .+.+|...|++..+..+.++..+..++.++..+|+++ +|
T Consensus 143 ~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~--eA 220 (290)
T PF04733_consen 143 KMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYE--EA 220 (290)
T ss_dssp HTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HH--HH
T ss_pred HcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHH--HH
Confidence 9999999999999999988877766666677777666 6999999999998888889999999999999999998 99
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHcccCCCCC
Q 005603 635 RSFLMNALRLEPTNHDAWMNLGLISKMEGSL-QQAADYFQAAYELKLSAPV 684 (688)
Q Consensus 635 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~l~p~~~~ 684 (688)
...+.+++..+|++++++.+++.+....|+. +.+.+++.+....+|++|.
T Consensus 221 e~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 221 EELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 9999999999999999999999999999998 6677888888888888763
No 119
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.33 E-value=2.1e-11 Score=106.37 Aligned_cols=113 Identities=19% Similarity=0.223 Sum_probs=105.8
Q ss_pred ccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 005603 538 PSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSII 617 (688)
Q Consensus 538 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 617 (688)
+...|.+......+|..+...|++++|...+++++..+|.++.+|..+|.++...|++++|+..++++++.+|+++..++
T Consensus 10 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 89 (135)
T TIGR02552 10 LGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYF 89 (135)
T ss_pred HcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 33455578889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHH
Q 005603 618 STAEILMKLGRQSMPIARSFLMNALRLEPTNHDAW 652 (688)
Q Consensus 618 ~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~ 652 (688)
.+|.++...|+++ +|+..++++++.+|++...+
T Consensus 90 ~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 90 HAAECLLALGEPE--SALKALDLAIEICGENPEYS 122 (135)
T ss_pred HHHHHHHHcCCHH--HHHHHHHHHHHhccccchHH
Confidence 9999999999998 99999999999999887644
No 120
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=1.4e-11 Score=114.32 Aligned_cols=102 Identities=23% Similarity=0.294 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005603 581 SWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISK 660 (688)
Q Consensus 581 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 660 (688)
-+-.-|.-+...++|.+|+..|.+||+++|.++..|.+.+.+|.++|.++ .|++.++.++.++|....+|..||.+|.
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~--~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYE--DAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchH--HHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 35566788889999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHcccCCCCC
Q 005603 661 MEGSLQQAADYFQAAYELKLSAPV 684 (688)
Q Consensus 661 ~~g~~~~A~~~~~~al~l~p~~~~ 684 (688)
.+|++++|++.|++|++++|++++
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~ 184 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNES 184 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHH
Confidence 999999999999999999999874
No 121
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.31 E-value=3e-11 Score=102.90 Aligned_cols=106 Identities=17% Similarity=0.151 Sum_probs=77.9
Q ss_pred ccCC-cchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 005603 538 PSVK-NLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSI 616 (688)
Q Consensus 538 ~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 616 (688)
.+.. +...+..+.+|..+...|++++|...|+-+..++|.+...|++||.++..+|++.+|+..|.+++.++|+++..+
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 3444 556667777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhC
Q 005603 617 ISTAEILMKLGRQSMPIARSFLMNALRLE 645 (688)
Q Consensus 617 ~~la~~~~~~g~~~~~~A~~~~~~al~~~ 645 (688)
.+.|.++...|+.+ .|++.|+.++...
T Consensus 107 ~~ag~c~L~lG~~~--~A~~aF~~Ai~~~ 133 (157)
T PRK15363 107 WAAAECYLACDNVC--YAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHcCCHH--HHHHHHHHHHHHh
Confidence 77777777777776 7777777777765
No 122
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.27 E-value=1.2e-10 Score=99.28 Aligned_cols=113 Identities=8% Similarity=-0.112 Sum_probs=104.8
Q ss_pred HHHHhcC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 005603 569 EKAKSIE-FYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPT 647 (688)
Q Consensus 569 ~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~ 647 (688)
.....+. ++.-+..+.+|..+...|++++|...|+-...++|.+...|+++|.++..+|++. +|+..|.+++.++|+
T Consensus 24 ~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~--~AI~aY~~A~~L~~d 101 (157)
T PRK15363 24 RMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWG--EAIYAYGRAAQIKID 101 (157)
T ss_pred HHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHH--HHHHHHHHHHhcCCC
Confidence 3445666 7778889999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccCCCC
Q 005603 648 NHDAWMNLGLISKMEGSLQQAADYFQAAYELKLSAP 683 (688)
Q Consensus 648 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 683 (688)
+|..++++|.++...|+.+.|.+.|+.|+....++|
T Consensus 102 dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 102 APQAPWAAAECYLACDNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCh
Confidence 999999999999999999999999999998764433
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.21 E-value=3.4e-09 Score=104.97 Aligned_cols=153 Identities=20% Similarity=0.145 Sum_probs=122.4
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhh
Q 005603 446 AGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSK 525 (688)
Q Consensus 446 p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 525 (688)
|... .+++..+..++..|++++|+..++..+...| +++..+...+.++...++.++|.+.+++++...|+
T Consensus 303 ~~~~-aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P--~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~------- 372 (484)
T COG4783 303 RGGL-AAQYGRALQTYLAGQYDEALKLLQPLIAAQP--DNPYYLELAGDILLEANKAKEAIERLKKALALDPN------- 372 (484)
T ss_pred ccch-HHHHHHHHHHHHhcccchHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-------
Confidence 5666 7888888888888888888888888888888 78888888888888888888888888888888665
Q ss_pred ccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005603 526 NFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSIS 605 (688)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 605 (688)
.+..+.++|.+|.+.|++.+|+..++..+..+|+++..|..|+..|..+|+..+|...+
T Consensus 373 ------------------~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~--- 431 (484)
T COG4783 373 ------------------SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR--- 431 (484)
T ss_pred ------------------ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH---
Confidence 57778888888888888888888888888888888888888888888888776665443
Q ss_pred HhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Q 005603 606 LAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLE 645 (688)
Q Consensus 606 l~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~ 645 (688)
+..+...|+++ +|+..+..+.+..
T Consensus 432 --------------AE~~~~~G~~~--~A~~~l~~A~~~~ 455 (484)
T COG4783 432 --------------AEGYALAGRLE--QAIIFLMRASQQV 455 (484)
T ss_pred --------------HHHHHhCCCHH--HHHHHHHHHHHhc
Confidence 45566677777 7888777777765
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.21 E-value=2e-09 Score=106.64 Aligned_cols=152 Identities=16% Similarity=0.057 Sum_probs=135.5
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhH
Q 005603 484 DQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPD 563 (688)
Q Consensus 484 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 563 (688)
....+++..+..+...|++++|...++.++...|+ ++..+...+.++...++..+
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~-------------------------N~~~~~~~~~i~~~~nk~~~ 358 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPD-------------------------NPYYLELAGDILLEANKAKE 358 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCC-------------------------CHHHHHHHHHHHHHcCChHH
Confidence 56788999999999999999999999998888555 79999999999999999999
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 005603 564 AEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALR 643 (688)
Q Consensus 564 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~ 643 (688)
|.+.+++++..+|+.+..+.++|.++...|++.+|+..++..+..+|+++..|..++..|..+|+.. +|.
T Consensus 359 A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~--~a~-------- 428 (484)
T COG4783 359 AIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRA--EAL-------- 428 (484)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchH--HHH--------
Confidence 9999999999999999999999999999999999999999999999999999999999999999976 443
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccc
Q 005603 644 LEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELK 679 (688)
Q Consensus 644 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 679 (688)
...+..|...|++++|+..+.++.+..
T Consensus 429 ---------~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 429 ---------LARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred ---------HHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 445666777888888888888877654
No 125
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.14 E-value=7.6e-10 Score=112.47 Aligned_cols=113 Identities=12% Similarity=0.074 Sum_probs=107.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q 005603 548 WQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLG 627 (688)
Q Consensus 548 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 627 (688)
+...|..++..|++++|+.+|.+++..+|+++.++..+|.++..+|++++|+..+++++.++|+++.+++.+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005603 628 RQSMPIARSFLMNALRLEPTNHDAWMNLGLISKME 662 (688)
Q Consensus 628 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 662 (688)
+++ +|+..|+++++++|+++.+...++.+....
T Consensus 85 ~~~--eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQ--TAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999 999999999999999999999998886655
No 126
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=3e-09 Score=99.99 Aligned_cols=122 Identities=22% Similarity=0.238 Sum_probs=109.8
Q ss_pred hhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHH
Q 005603 561 LPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQ-SMPIARSFLM 639 (688)
Q Consensus 561 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~~~A~~~~~ 639 (688)
.++-+.-++.-+..+|+++..|..||.+|..+|+++.|...|.+++++.|+++..+..+|.++....+- .-.++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 455566678888999999999999999999999999999999999999999999999999988765432 2358999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccCCC
Q 005603 640 NALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKLSA 682 (688)
Q Consensus 640 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 682 (688)
+++..+|++..+.+.||..++..|++.+|+..++..+...|.+
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999987754
No 127
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.08 E-value=1.1e-07 Score=90.13 Aligned_cols=312 Identities=14% Similarity=0.028 Sum_probs=226.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhh-hcccchhhH
Q 005603 294 MDHLTYALSVTGQFELLAEYVEQALPGIYNR---AERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQS-TTSQKEHFL 369 (688)
Q Consensus 294 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~-~~~~~~~~~ 369 (688)
...-|.-++.+.++++|+..+.+.+....+. ...+-.+..+...+|.|++++..--..+ +. ...++..+.
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi------~~a~~~~ds~~~ 82 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQI------DTARELEDSDFL 82 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 3455667778889999999888887644332 3344456778899999998876544333 11 122344456
Q ss_pred HHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 005603 370 AEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNERED-----PEMMYYLGLEHAVQRNVEAAFDYAIMYSDT 444 (688)
Q Consensus 370 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 444 (688)
-.++..++..+....++ .+++.+-+..+.+.... ..+...++..+...+.++++++.|+.+++.
T Consensus 83 ~ea~lnlar~~e~l~~f-----------~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~ 151 (518)
T KOG1941|consen 83 LEAYLNLARSNEKLCEF-----------HKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRY 151 (518)
T ss_pred HHHHHHHHHHHHHHHHh-----------hhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 78899999999998888 99998888777553222 356777999999999999999999999987
Q ss_pred cCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC--------CcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005603 445 VAGNS-----GRGWKLLALILSADQRLKDAQSIVDFSLDEAGSM--------DQLELLRLKAVLQIAQEQPKQAIGTYRI 511 (688)
Q Consensus 445 ~p~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~ 511 (688)
...+. ..++..+|.++....++++|+-+..++.++.... ...-.++.++..+..+|..-.|.+..++
T Consensus 152 A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~E 231 (518)
T KOG1941|consen 152 AHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEE 231 (518)
T ss_pred hhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 43322 3577889999999999999999999988764321 2344678889999999999999999999
Q ss_pred HHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC------ChhHHHHH
Q 005603 512 LLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFY------SPGSWHTT 585 (688)
Q Consensus 512 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l 585 (688)
+.++.-.. .+++........+|++|...|+.+.|..-|+.+...... ...++...
T Consensus 232 a~klal~~-------------------Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~ 292 (518)
T KOG1941|consen 232 AMKLALQH-------------------GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGA 292 (518)
T ss_pred HHHHHHHh-------------------CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 98875442 456667888899999999999999999999998775432 12344455
Q ss_pred HHHHHHcCCHHH-----HHHHHHHHHhcCCC------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 005603 586 GMLFEAQSQYKE-----ALVSFSISLAIEPD------YIPSIISTAEILMKLGRQSMPIARSFLMNALR 643 (688)
Q Consensus 586 g~~~~~~g~~~~-----A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~ 643 (688)
+.++....-..+ |++.-.+++++... -...+..++.+|...|..+ +-...+.++-+
T Consensus 293 Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d--~~~~h~~ra~~ 359 (518)
T KOG1941|consen 293 AKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQD--ELRAHVVRAHE 359 (518)
T ss_pred HHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchh--HHHHHHHHHHH
Confidence 555554443333 77777777765332 1346678889998888877 65555555544
No 128
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.08 E-value=1.3e-08 Score=94.89 Aligned_cols=178 Identities=15% Similarity=-0.000 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhcccc
Q 005603 451 RGWKLLALILSADQRLKDAQSIVDFSLDEAGSM-DQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHK 529 (688)
Q Consensus 451 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 529 (688)
..++..|..+...|++.+|+..|++++...|.. ....+.+.+|.++...|++++|+..+++.+...|+
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~----------- 74 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN----------- 74 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-----------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----------
Confidence 455555666666666666666666666555532 23445555566666666666666666666655555
Q ss_pred ccccccccccCCcchHHHHHHHHHHHHHcCC-----------hhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHH
Q 005603 530 TKYITSEAPSVKNLEIATWQDLATIYMKLGS-----------LPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEA 598 (688)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 598 (688)
++..+.+++.+|.++..... ..+|+..|+..+...|++..+-...-.+
T Consensus 75 -----------~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l---------- 133 (203)
T PF13525_consen 75 -----------SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRL---------- 133 (203)
T ss_dssp ------------TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHH----------
T ss_pred -----------CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHH----------
Confidence 34445555555555544321 1244444444444444443221100000
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHH
Q 005603 599 LVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNH---DAWMNLGLISKMEGSLQQAA 669 (688)
Q Consensus 599 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~ 669 (688)
..++..+ ..--+.+|..|.+.|.+. .|+..++.+++..|+.+ +++..++..|..+|..+.|.
T Consensus 134 -~~l~~~l------a~~e~~ia~~Y~~~~~y~--aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 134 -AELRNRL------AEHELYIARFYYKRGKYK--AAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp -HHHHHHH------HHHHHHHHHHHHCTT-HH--HHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred -HHHHHHH------HHHHHHHHHHHHHcccHH--HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 0000000 112245678888888887 89999999999988874 57888889999999888543
No 129
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.06 E-value=1.9e-09 Score=91.63 Aligned_cols=103 Identities=20% Similarity=0.228 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHH
Q 005603 546 ATWQDLATIYMKLGSLPDAEICTEKAKSIEFYS---PGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDY---IPSIIST 619 (688)
Q Consensus 546 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 619 (688)
.+++.+|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|++++|+..|++++...|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 445555555555555555555555555555543 3345555555555555555555555555555443 3445555
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCCCHH
Q 005603 620 AEILMKLGRQSMPIARSFLMNALRLEPTNHD 650 (688)
Q Consensus 620 a~~~~~~g~~~~~~A~~~~~~al~~~p~~~~ 650 (688)
|.++...|+++ +|+..++++++..|++..
T Consensus 83 ~~~~~~~~~~~--~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 83 GMSLQELGDKE--KAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHhCChH--HHHHHHHHHHHHCcCChh
Confidence 55555555555 555555555555555443
No 130
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.06 E-value=2.6e-09 Score=108.66 Aligned_cols=113 Identities=17% Similarity=0.155 Sum_probs=105.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHH
Q 005603 489 LRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICT 568 (688)
Q Consensus 489 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 568 (688)
+...|...+..|++++|+..|++++...|+ ++.++..+|.+|...|++++|+..+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~-------------------------~~~a~~~~a~~~~~~g~~~eAl~~~ 59 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPN-------------------------NAELYADRAQANIKLGNFTEAVADA 59 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------------------------CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 456788889999999999999999999666 6899999999999999999999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 005603 569 EKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKL 626 (688)
Q Consensus 569 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 626 (688)
++++.++|.++.+++.+|.++..+|++++|+..|+++++++|++..+...++.+..++
T Consensus 60 ~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 60 NKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998888886665
No 131
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.06 E-value=7e-09 Score=94.28 Aligned_cols=121 Identities=16% Similarity=0.171 Sum_probs=88.8
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhH
Q 005603 484 DQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPD 563 (688)
Q Consensus 484 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 563 (688)
.....++.+|..+...|++++|+..|++++...|+ .+....++..+|.++...|++++
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----------------------~~~~~~~~~~la~~~~~~g~~~~ 90 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEED----------------------PNDRSYILYNMGIIYASNGEHDK 90 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc----------------------cchHHHHHHHHHHHHHHcCCHHH
Confidence 55667778888888888888888888888876554 11235677888888888888888
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 005603 564 AEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALR 643 (688)
Q Consensus 564 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~ 643 (688)
|+.++++++...|.+...+..+|.++...|+...+...+..++.. +. +|++++++++.
T Consensus 91 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~--------------------~~--~A~~~~~~a~~ 148 (172)
T PRK02603 91 ALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEAL--------------------FD--KAAEYWKQAIR 148 (172)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHH--------------------HH--HHHHHHHHHHh
Confidence 888888888888888888888888888887776666555554321 33 77777777777
Q ss_pred hCCCC
Q 005603 644 LEPTN 648 (688)
Q Consensus 644 ~~p~~ 648 (688)
.+|++
T Consensus 149 ~~p~~ 153 (172)
T PRK02603 149 LAPNN 153 (172)
T ss_pred hCchh
Confidence 77765
No 132
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.05 E-value=1.6e-08 Score=94.32 Aligned_cols=186 Identities=16% Similarity=0.115 Sum_probs=123.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-CcHHHHH
Q 005603 414 DPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNS--GRGWKLLALILSADQRLKDAQSIVDFSLDEAGSM-DQLELLR 490 (688)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~ 490 (688)
.+..++..|..++..|++.+|+..|++++...|.++ ..+.+.+|.++...|++++|+..+++.+...|.. ....+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 467899999999999999999999999999988764 3788999999999999999999999999999854 3456788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 005603 491 LKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEK 570 (688)
Q Consensus 491 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 570 (688)
.+|.++..... ... ....++.. .. .-...+..+..-|=...-..+|...+..
T Consensus 84 ~~g~~~~~~~~--~~~-----~~~~D~~~--~~-------------------~A~~~~~~li~~yP~S~y~~~A~~~l~~ 135 (203)
T PF13525_consen 84 MLGLSYYKQIP--GIL-----RSDRDQTS--TR-------------------KAIEEFEELIKRYPNSEYAEEAKKRLAE 135 (203)
T ss_dssp HHHHHHHHHHH--HHH------TT---HH--HH-------------------HHHHHHHHHHHH-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCc--cch-----hcccChHH--HH-------------------HHHHHHHHHHHHCcCchHHHHHHHHHHH
Confidence 88877665511 000 00111110 00 0112222333333333444455544443
Q ss_pred HHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhCCCC
Q 005603 571 AKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYI---PSIISTAEILMKLGRQS 630 (688)
Q Consensus 571 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~ 630 (688)
+.. .-..--+.+|..|.+.|.+..|+..++.+++..|+.. .++..++..+.++|..+
T Consensus 136 l~~---~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 136 LRN---RLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHH---HHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHH---HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 322 1233446678899999999999999999999999864 56788888999998865
No 133
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=4.4e-06 Score=87.58 Aligned_cols=194 Identities=14% Similarity=0.138 Sum_probs=129.1
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhh
Q 005603 289 WDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHF 368 (688)
Q Consensus 289 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 368 (688)
.|+..|.+.|..+...|+.+.|+.+|+.+ .-|+.+..+.+-+|+.++|-.+-++.- +
T Consensus 910 ~d~~L~~WWgqYlES~GemdaAl~~Y~~A--------~D~fs~VrI~C~qGk~~kAa~iA~esg-------------d-- 966 (1416)
T KOG3617|consen 910 RDESLYSWWGQYLESVGEMDAALSFYSSA--------KDYFSMVRIKCIQGKTDKAARIAEESG-------------D-- 966 (1416)
T ss_pred cchHHHHHHHHHHhcccchHHHHHHHHHh--------hhhhhheeeEeeccCchHHHHHHHhcc-------------c--
Confidence 57889999999999999999999999875 346777777888888888876655541 1
Q ss_pred HHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHc------CCCC--------------HHHHHHHH------
Q 005603 369 LAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLN------ERED--------------PEMMYYLG------ 422 (688)
Q Consensus 369 ~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~--------------~~~~~~la------ 422 (688)
..+.+.+|.-|.+.|+. .+|+..|.++-.. ...+ +.-....|
T Consensus 967 -~AAcYhlaR~YEn~g~v-----------~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~ 1034 (1416)
T KOG3617|consen 967 -KAACYHLARMYENDGDV-----------VKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL 1034 (1416)
T ss_pred -HHHHHHHHHHhhhhHHH-----------HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc
Confidence 35667788888888888 7777777665422 1111 01111122
Q ss_pred --------HHHHHcCCHHHHHHHHHHH-----H-----hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH------Hh
Q 005603 423 --------LEHAVQRNVEAAFDYAIMY-----S-----DTVAGNSGRGWKLLALILSADQRLKDAQSIVDFS------LD 478 (688)
Q Consensus 423 --------~~~~~~g~~~~A~~~~~~~-----l-----~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a------l~ 478 (688)
.+|.+.|.+.+|++..-+. + .++|++....+..-+..+....+|++|..++-.+ +.
T Consensus 1035 g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~Alq 1114 (1416)
T KOG3617|consen 1035 GGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQ 1114 (1416)
T ss_pred chhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344455555555432211 1 2355544377778888899999999998776443 32
Q ss_pred h----------------cCCC-------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 005603 479 E----------------AGSM-------DQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQ 517 (688)
Q Consensus 479 ~----------------~p~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 517 (688)
+ .|.. ....++..+|.++.++|.|..|-+-|.++=....
T Consensus 1115 lC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~ 1176 (1416)
T KOG3617|consen 1115 LCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLS 1176 (1416)
T ss_pred HHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHH
Confidence 1 1110 2346788999999999999999999988765533
No 134
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.02 E-value=5.4e-08 Score=107.07 Aligned_cols=249 Identities=12% Similarity=0.003 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-cCCCc---HHHHHHHHHHHHHcCCHHHHHHHH
Q 005603 398 KEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDT-VAGNS---GRGWKLLALILSADQRLKDAQSIV 473 (688)
Q Consensus 398 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~---~~~~~~la~~~~~~~~~~~A~~~~ 473 (688)
.+..+.|++.+..+|+..-.|..+-..+.+.++.++|...+++++.. ++... ...|..+-.+...-|.-+...+.|
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 44566677777777777777777777777777777777777777754 22211 145555555555556666667777
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHH
Q 005603 474 DFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLAT 553 (688)
Q Consensus 474 ~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 553 (688)
++|-+.. +...++..+..+|...+++++|.++++.+++...+ ...+|..++.
T Consensus 1521 eRAcqyc---d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q-------------------------~~~vW~~y~~ 1572 (1710)
T KOG1070|consen 1521 ERACQYC---DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ-------------------------TRKVWIMYAD 1572 (1710)
T ss_pred HHHHHhc---chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc-------------------------hhhHHHHHHH
Confidence 7776665 35566777777777777777777777777776443 4667777777
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCh
Q 005603 554 IYMKLGSLPDAEICTEKAKSIEFY--SPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSM 631 (688)
Q Consensus 554 ~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 631 (688)
.+++.++-+.|...+.+|++.-|. +.......+.+.++.|+.+.+...|+..+..+|...+.|.-+...-.+.|+.+
T Consensus 1573 fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~- 1651 (1710)
T KOG1070|consen 1573 FLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIK- 1651 (1710)
T ss_pred HHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHH-
Confidence 777777777777777777777775 55666666777777777777777777777777777777777777777777766
Q ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHH
Q 005603 632 PIARSFLMNALRLE--PTNHDAWMNLGLISK-MEGSLQQAADYFQAAY 676 (688)
Q Consensus 632 ~~A~~~~~~al~~~--p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al 676 (688)
.++..|++++.+. |......|..=.-|. ..|+-+.....=.+|.
T Consensus 1652 -~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1652 -YVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAK 1698 (1710)
T ss_pred -HHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 7777777777653 333333333333333 2344433333333443
No 135
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.00 E-value=7.7e-09 Score=87.87 Aligned_cols=105 Identities=16% Similarity=0.202 Sum_probs=97.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC---HHHH
Q 005603 579 PGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDY---IPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTN---HDAW 652 (688)
Q Consensus 579 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~---~~~~ 652 (688)
+.+++.+|..+...|++++|+..|.+++...|++ ..+++.+|.++...|+++ +|+..|++++..+|++ +.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYA--DAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHH--HHHHHHHHHHHHCCCCCcccHHH
Confidence 4678999999999999999999999999998876 578999999999999998 9999999999998885 6789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcccCCCCCC
Q 005603 653 MNLGLISKMEGSLQQAADYFQAAYELKLSAPVQ 685 (688)
Q Consensus 653 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 685 (688)
+.+|.++...|++++|..++++++...|+++.+
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 999999999999999999999999999998753
No 136
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.00 E-value=7.4e-08 Score=91.98 Aligned_cols=180 Identities=13% Similarity=-0.119 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhcccc
Q 005603 451 RGWKLLALILSADQRLKDAQSIVDFSLDEAGSM-DQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHK 529 (688)
Q Consensus 451 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 529 (688)
..++..|..+...|++++|+..|++++...|.. ....+.+.+|.++...+++++|+..+++.++..|+
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~----------- 101 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT----------- 101 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC-----------
Confidence 444455555555555555555555555555521 11122356666666666666666666666666665
Q ss_pred ccccccccccCCcchHHHHHHHHHHHHHcC------------------ChhHHHHHHHHHHhcCCCChhH---HHHHHHH
Q 005603 530 TKYITSEAPSVKNLEIATWQDLATIYMKLG------------------SLPDAEICTEKAKSIEFYSPGS---WHTTGML 588 (688)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g------------------~~~~A~~~~~~al~~~p~~~~~---~~~lg~~ 588 (688)
+|..+.+++.+|.++...+ ...+|+..|++.+...|++..+ ...+..+
T Consensus 102 -----------~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l 170 (243)
T PRK10866 102 -----------HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFL 170 (243)
T ss_pred -----------CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH
Confidence 4445666666665543332 1356888899999999987432 1111111
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCH
Q 005603 589 FEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTN---HDAWMNLGLISKMEGSL 665 (688)
Q Consensus 589 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~ 665 (688)
... + ..--+..|..|.+.|.+. .|+.-++.+++..|+. +++++.++..|..+|..
T Consensus 171 ~~~--------------l------a~~e~~ia~~Y~~~~~y~--AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~ 228 (243)
T PRK10866 171 KDR--------------L------AKYELSVAEYYTKRGAYV--AVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLN 228 (243)
T ss_pred HHH--------------H------HHHHHHHHHHHHHcCchH--HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCCh
Confidence 111 1 122245778888888887 8888899999888775 47888889999999999
Q ss_pred HHHHHHHHH
Q 005603 666 QQAADYFQA 674 (688)
Q Consensus 666 ~~A~~~~~~ 674 (688)
++|......
T Consensus 229 ~~a~~~~~~ 237 (243)
T PRK10866 229 AQADKVAKI 237 (243)
T ss_pred HHHHHHHHH
Confidence 888876654
No 137
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.00 E-value=6.2e-09 Score=94.60 Aligned_cols=120 Identities=18% Similarity=0.164 Sum_probs=97.3
Q ss_pred CcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 005603 541 KNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYS---PGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSII 617 (688)
Q Consensus 541 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 617 (688)
.+.....++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+++++...|++...+.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 34467788999999999999999999999999877653 467889999999999999999999999999999888888
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccCCC
Q 005603 618 STAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKLSA 682 (688)
Q Consensus 618 ~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 682 (688)
.+|.++...|+.. .+...++.++. .+++|.+++++++.++|++
T Consensus 111 ~lg~~~~~~g~~~--~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 111 NIAVIYHKRGEKA--EEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHcCChH--hHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence 9999998888876 55555554432 2677888888888888875
No 138
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.00 E-value=1.1e-07 Score=90.82 Aligned_cols=198 Identities=9% Similarity=-0.023 Sum_probs=136.8
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHH---HHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccc
Q 005603 289 WDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAER---WYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQK 365 (688)
Q Consensus 289 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 365 (688)
+++..++..|..+...|++++|+..|++++...|..+.+ .+.+|.++++.+++++|+..+++.+ ...+.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi------~~~P~~~ 103 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI------RLNPTHP 103 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH------HhCcCCC
Confidence 467778889999999999999999999999999988754 4899999999999999999999998 5455555
Q ss_pred hhhHHHHHHHHHHHHHhhhhh------ccchHHh-hHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005603 366 EHFLAEAYKFLGICYGNVARK------SISDTER-VFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYA 438 (688)
Q Consensus 366 ~~~~~~~~~~lg~~~~~~~~~------~~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 438 (688)
.. ..+++.+|.++...++. ......+ .....+|+..|++.++..|+..-+ .+|...+
T Consensus 104 ~~--~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl 167 (243)
T PRK10866 104 NI--DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRL 167 (243)
T ss_pred ch--HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHH
Confidence 44 88999999987555421 0111111 233467889999999999976321 1111111
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-CcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005603 439 IMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSM-DQLELLRLKAVLQIAQEQPKQAIGTYRIL 512 (688)
Q Consensus 439 ~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a 512 (688)
..+-..- . .--+..|..|.+.|.|..|+.-++.+++..|.. ...+++..++..|...|..++|......+
T Consensus 168 ~~l~~~l---a-~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 168 VFLKDRL---A-KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHH---H-HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 1111100 0 223356666777777777777777777766633 34566777777777777777776655443
No 139
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.00 E-value=4.8e-09 Score=84.94 Aligned_cols=99 Identities=29% Similarity=0.408 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005603 581 SWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISK 660 (688)
Q Consensus 581 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 660 (688)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...|+++ +|+..+++++...|.+..++..+|.++.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYE--EALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 46677777777778888888888777777777777777888888878777 7888888888877777777888888888
Q ss_pred HcCCHHHHHHHHHHHHcccCC
Q 005603 661 MEGSLQQAADYFQAAYELKLS 681 (688)
Q Consensus 661 ~~g~~~~A~~~~~~al~l~p~ 681 (688)
..|++++|..++.+++...|+
T Consensus 80 ~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 80 KLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHhHHHHHHHHHHHHccCCC
Confidence 888888888888888777663
No 140
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.98 E-value=3.7e-07 Score=86.74 Aligned_cols=318 Identities=14% Similarity=0.048 Sum_probs=224.9
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHH
Q 005603 326 ERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLN 405 (688)
Q Consensus 326 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 405 (688)
......|.-++...++++|+..+.+.+ . ..+....+-..+-.+..+...+|++ ++++..--
T Consensus 7 k~q~~~g~~Ly~s~~~~~al~~w~~~L------~--~l~~~~~Rf~~lG~l~~a~s~~g~y-----------~~mL~~a~ 67 (518)
T KOG1941|consen 7 KKQIEKGLQLYQSNQTEKALQVWTKVL------E--KLSDLMGRFRVLGCLVTAHSEMGRY-----------KEMLKFAV 67 (518)
T ss_pred HHHHHHHHhHhcCchHHHHHHHHHHHH------H--HHHHHHHHHHHhccchhhhhhhHHH-----------HHHHHHHH
Confidence 445667888899999999999999997 2 2222222245556667777888887 65554332
Q ss_pred ----HHHHcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005603 406 ----CAFLNERE--DPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGN----SGRGWKLLALILSADQRLKDAQSIVDF 475 (688)
Q Consensus 406 ----~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~~la~~~~~~~~~~~A~~~~~~ 475 (688)
-+...+.. ...++.+++..+...-++.+++.+.+..+...... +......++..+..++.++++++.|+.
T Consensus 68 sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~ 147 (518)
T KOG1941|consen 68 SQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEK 147 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHH
Confidence 22222211 14577889999999999999999988887763222 225667789999999999999999999
Q ss_pred HHhhcCCC----CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhH-HhhhhccccccccccccccCCcchHHHHHH
Q 005603 476 SLDEAGSM----DQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQR-ELHSKNFHKTKYITSEAPSVKNLEIATWQD 550 (688)
Q Consensus 476 al~~~p~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (688)
++...... -...++..+|.++....++++|.-+..++.++..... +.+. ......+++.
T Consensus 148 A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~----------------~kyr~~~lyh 211 (518)
T KOG1941|consen 148 ALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWS----------------LKYRAMSLYH 211 (518)
T ss_pred HHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchh----------------HHHHHHHHHH
Confidence 99765422 2345678999999999999999999999999865421 0000 0123567888
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCC------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHH
Q 005603 551 LATIYMKLGSLPDAEICTEKAKSIEF------YSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPD------YIPSIIS 618 (688)
Q Consensus 551 la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~ 618 (688)
++..+..+|..-+|.++.+++.++.- -.+.....+|.+|...|+.+.|..-|+.+...-.. ...++..
T Consensus 212 maValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g 291 (518)
T KOG1941|consen 212 MAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDG 291 (518)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 99999999999999999999987642 23445678899999999999999999999865321 2445555
Q ss_pred HHHHHHHhCCCC---hHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 005603 619 TAEILMKLGRQS---MPIARSFLMNALRLEPTN------HDAWMNLGLISKMEGSLQQAADYFQAAYEL 678 (688)
Q Consensus 619 la~~~~~~g~~~---~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 678 (688)
.+.++....-.. -=.|++.-++++++...- -..+..++.+|..+|.-++=.+.+.++-+.
T Consensus 292 ~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 292 AAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred HHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 665554332222 004777777777764321 245677999999999888777777766543
No 141
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.97 E-value=1.5e-08 Score=91.79 Aligned_cols=103 Identities=9% Similarity=-0.012 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchH
Q 005603 466 LKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEI 545 (688)
Q Consensus 466 ~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (688)
+..+...+...+...+.......++.+|.++...|++++|+..|++++.+.|+ .+..+
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~----------------------~~~~~ 72 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID----------------------PYDRS 72 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc----------------------chhhH
Confidence 34444444444333332234556667777777777777777777777666432 11134
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 005603 546 ATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFE 590 (688)
Q Consensus 546 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 590 (688)
.++.++|.++...|++++|+.++++++.+.|.....+..+|.++.
T Consensus 73 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 73 YILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 566777777777777777777777777777777666666666666
No 142
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.97 E-value=1.5e-09 Score=81.76 Aligned_cols=67 Identities=25% Similarity=0.399 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcccC
Q 005603 612 YIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEG-SLQQAADYFQAAYELKL 680 (688)
Q Consensus 612 ~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p 680 (688)
++.+|..+|.++...|+++ +|+..|+++++.+|+++.+|+++|.++..+| ++++|+.+|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~--~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYE--EAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHH--HHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4556677777777777766 7777777777777777777777777777777 57777777777777666
No 143
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.96 E-value=2.6e-07 Score=101.96 Aligned_cols=224 Identities=11% Similarity=0.068 Sum_probs=179.5
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhc
Q 005603 308 ELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKS 387 (688)
Q Consensus 308 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~ 387 (688)
.+..+-|++.+..+|+..-.|..+-..+++.++.++|.++.++++ +.|+..+... ....|..+-.....-|..
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL---~tIN~REeeE---KLNiWiA~lNlEn~yG~e- 1513 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERAL---KTINFREEEE---KLNIWIAYLNLENAYGTE- 1513 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHh---hhCCcchhHH---HHHHHHHHHhHHHhhCcH-
Confidence 345677888899999999999999999999999999999999998 2232111111 123333333333333444
Q ss_pred cchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHH
Q 005603 388 ISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLK 467 (688)
Q Consensus 388 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~ 467 (688)
+.-.+.|++|-+.. +...++..|..+|...+++++|.++++.+++...... ..|..++..++.+++-+
T Consensus 1514 ----------esl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~-~vW~~y~~fLl~~ne~~ 1581 (1710)
T KOG1070|consen 1514 ----------ESLKKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTR-KVWIMYADFLLRQNEAE 1581 (1710)
T ss_pred ----------HHHHHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchh-hHHHHHHHHHhcccHHH
Confidence 66778888887765 3355788899999999999999999999999888777 99999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHH
Q 005603 468 DAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIAT 547 (688)
Q Consensus 468 ~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (688)
.|..++.+|+..-|+..+.......|.+-++.|+.+.+..+|+..+..+|. ..+.
T Consensus 1582 aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-------------------------RtDl 1636 (1710)
T KOG1070|consen 1582 AARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-------------------------RTDL 1636 (1710)
T ss_pred HHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-------------------------chhH
Confidence 999999999998886668888888899999999999999999999888776 5788
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 005603 548 WQDLATIYMKLGSLPDAEICTEKAKSIE 575 (688)
Q Consensus 548 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 575 (688)
|.-+.+.-.+.|+.+.+...|++++.+.
T Consensus 1637 W~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1637 WSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 8888888888899999999999988765
No 144
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.96 E-value=4.2e-08 Score=96.84 Aligned_cols=215 Identities=13% Similarity=0.064 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC-----CCcHHHHHHHHHHHHHcCCHHHHHHH
Q 005603 398 KEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVA-----GNSGRGWKLLALILSADQRLKDAQSI 472 (688)
Q Consensus 398 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-----~~~~~~~~~la~~~~~~~~~~~A~~~ 472 (688)
++|...|+++ |..|...|++++|...|.++.+..- ......+...+.++... ++++|+..
T Consensus 32 e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~ 96 (282)
T PF14938_consen 32 EEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIEC 96 (282)
T ss_dssp HHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHH
T ss_pred HHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHH
Confidence 7777777765 6777888999999999988876532 11224566666676555 99999999
Q ss_pred HHHHHhhcCCC----CcHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHH
Q 005603 473 VDFSLDEAGSM----DQLELLRLKAVLQIAQ-EQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIAT 547 (688)
Q Consensus 473 ~~~al~~~p~~----~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (688)
++++++..... .-...+..+|.+|... |++++|++.|++++......... .....+
T Consensus 97 ~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~-------------------~~a~~~ 157 (282)
T PF14938_consen 97 YEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSP-------------------HSAAEC 157 (282)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-H-------------------HHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh-------------------hhHHHH
Confidence 99999754211 2356788999999999 99999999999999987763211 123678
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCC-------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----HH
Q 005603 548 WQDLATIYMKLGSLPDAEICTEKAKSIEFYS-------PGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYI-----PS 615 (688)
Q Consensus 548 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~ 615 (688)
+..+|.++...|+|++|+..|++.....-++ ...+...+.++...|+...|...+++....+|... ..
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 8899999999999999999999988754321 13456778899999999999999999999988643 23
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Q 005603 616 IISTAEILMKLGRQSMPIARSFLMNALRLEP 646 (688)
Q Consensus 616 ~~~la~~~~~~g~~~~~~A~~~~~~al~~~p 646 (688)
...+-.++.....-.+.+|+..|.+..+++|
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 3444444433332224466666666555543
No 145
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.95 E-value=1.1e-08 Score=92.63 Aligned_cols=120 Identities=20% Similarity=0.225 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCCChHHHH
Q 005603 561 LPDAEICTEKAKSIEFYS--PGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDY---IPSIISTAEILMKLGRQSMPIAR 635 (688)
Q Consensus 561 ~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~~~A~ 635 (688)
+..+...+...++..+.. ...|+.+|.++...|++++|+..|++++.+.|+. +.++.++|.++...|+++ +|+
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~--eA~ 92 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHT--KAL 92 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHH--HHH
Confidence 444444444443333333 4456677777777777777777777777665542 346777777777777776 777
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHcccCCC
Q 005603 636 SFLMNALRLEPTNHDAWMNLGLISK-------MEGSLQ-------QAADYFQAAYELKLSA 682 (688)
Q Consensus 636 ~~~~~al~~~p~~~~~~~~lg~~~~-------~~g~~~-------~A~~~~~~al~l~p~~ 682 (688)
..+++++.++|.....+.++|.++. ..|+++ +|..+|++++..+|++
T Consensus 93 ~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 93 EYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 7777777777777777766666666 566655 6666777777777753
No 146
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.94 E-value=2.5e-08 Score=105.51 Aligned_cols=136 Identities=18% Similarity=0.090 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHcCC---hhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC--------CHHHHHHHHHHHHhc--CCCC
Q 005603 546 ATWQDLATIYMKLGS---LPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQS--------QYKEALVSFSISLAI--EPDY 612 (688)
Q Consensus 546 ~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--------~~~~A~~~~~~al~~--~p~~ 612 (688)
.-++..|.-+...++ ...|+.+|+++++++|+++.++-.++.++.... +...+.....+++.+ +|.+
T Consensus 340 y~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~ 419 (517)
T PRK10153 340 LTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVL 419 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCC
Confidence 334555655655444 789999999999999999999999888776542 345666667776664 7778
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccCCCCC
Q 005603 613 IPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKLSAPV 684 (688)
Q Consensus 613 ~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 684 (688)
+.++..+|......|+++ +|...+++++.++| +..+|..+|.++...|++++|++.|++|+.++|.+|.
T Consensus 420 ~~~~~ala~~~~~~g~~~--~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 420 PRIYEILAVQALVKGKTD--EAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 888999999999999998 99999999999999 5889999999999999999999999999999999884
No 147
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.94 E-value=2.9e-09 Score=80.24 Aligned_cols=67 Identities=24% Similarity=0.483 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 005603 544 EIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQS-QYKEALVSFSISLAIEP 610 (688)
Q Consensus 544 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p 610 (688)
++.+|..+|.++...|++++|+.+|+++++.+|+++.+|+++|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 35667777777777777777777777777777777777777777777777 57777777777777665
No 148
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=4.5e-07 Score=82.94 Aligned_cols=71 Identities=14% Similarity=0.125 Sum_probs=37.6
Q ss_pred ChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCC
Q 005603 560 SLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQS 630 (688)
Q Consensus 560 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 630 (688)
+..+|.-+|++.-...|..+...+..+.++..+|+|++|...++.++..++++++++.++..+-...|...
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~ 258 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDA 258 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCCh
Confidence 34555555555555444445555555555555555555555555555555555555555555555555543
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.92 E-value=4.3e-08 Score=86.16 Aligned_cols=117 Identities=24% Similarity=0.149 Sum_probs=102.5
Q ss_pred HcCChhHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCCC
Q 005603 557 KLGSLPDAEICTEKAKSIEFYS---PGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDY---IPSIISTAEILMKLGRQS 630 (688)
Q Consensus 557 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~ 630 (688)
..+++..+...+++.+..+|+. ..+.+.+|.++...|++++|+..|+.++...|+. ..+.+.++.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 5889999999999999999988 4567889999999999999999999999987664 457888999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005603 631 MPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAY 676 (688)
Q Consensus 631 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 676 (688)
+|+..++. +...+-.+.++..+|.+|...|++++|+..|++|+
T Consensus 103 --~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 --EALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred --HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999966 33344557788899999999999999999999985
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.92 E-value=1.3e-08 Score=82.44 Aligned_cols=99 Identities=24% Similarity=0.355 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 005603 547 TWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKL 626 (688)
Q Consensus 547 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 626 (688)
++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhCCC
Q 005603 627 GRQSMPIARSFLMNALRLEPT 647 (688)
Q Consensus 627 g~~~~~~A~~~~~~al~~~p~ 647 (688)
|+++ +|...+.++++..|.
T Consensus 82 ~~~~--~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYE--EALEAYEKALELDPN 100 (100)
T ss_pred HhHH--HHHHHHHHHHccCCC
Confidence 9988 999999999988773
No 151
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.91 E-value=6.1e-07 Score=93.74 Aligned_cols=172 Identities=15% Similarity=0.092 Sum_probs=104.9
Q ss_pred CCccCCCchHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhcCCHHHHHHHHH------------HhcCCCCCCHHH
Q 005603 260 GPIAPKDNVEEAILLLLILMEKVASKEMEWDAEIMDHLTYALSVTGQFELLAEYVE------------QALPGIYNRAER 327 (688)
Q Consensus 260 ~~~~~~~~~eea~~~l~~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~------------~~l~~~p~~~~~ 327 (688)
..|+.-|+.++|..-+ +.+ ....+|.+++....+..+.+-|.-++- ++. .+|+ +.
T Consensus 736 SfyvtiG~MD~AfksI-----~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~-q~~~--e~ 802 (1416)
T KOG3617|consen 736 SFYVTIGSMDAAFKSI-----QFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ-QNGE--ED 802 (1416)
T ss_pred eEEEEeccHHHHHHHH-----HHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH-hCCc--ch
Confidence 4677788888886543 111 245678888887777777666655542 222 2232 33
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHH
Q 005603 328 WYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCA 407 (688)
Q Consensus 328 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 407 (688)
-...|......|-.++|..+|+++- -+-.+-..|...|.+ ++|.++-+.-
T Consensus 803 eakvAvLAieLgMlEeA~~lYr~ck-------------------R~DLlNKlyQs~g~w-----------~eA~eiAE~~ 852 (1416)
T KOG3617|consen 803 EAKVAVLAIELGMLEEALILYRQCK-------------------RYDLLNKLYQSQGMW-----------SEAFEIAETK 852 (1416)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHH-------------------HHHHHHHHHHhcccH-----------HHHHHHHhhc
Confidence 4456777788899999999999883 123445566677777 7766654432
Q ss_pred HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------HhhcC----------CCcHHHHHHHHHHHHHcCCHH
Q 005603 408 FLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMY----------SDTVA----------GNSGRGWKLLALILSADQRLK 467 (688)
Q Consensus 408 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~----------l~~~p----------~~~~~~~~~la~~~~~~~~~~ 467 (688)
-.+ .--..+++.|..+...++.+.|+++|+++ +..+| .++ ..|...|..+...|+.+
T Consensus 853 DRi--HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~-~L~~WWgqYlES~Gemd 929 (1416)
T KOG3617|consen 853 DRI--HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDE-SLYSWWGQYLESVGEMD 929 (1416)
T ss_pred cce--ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccch-HHHHHHHHHHhcccchH
Confidence 111 12345677777777777777777777764 11222 122 45555666666667777
Q ss_pred HHHHHHHHHH
Q 005603 468 DAQSIVDFSL 477 (688)
Q Consensus 468 ~A~~~~~~al 477 (688)
.|+.+|..+-
T Consensus 930 aAl~~Y~~A~ 939 (1416)
T KOG3617|consen 930 AALSFYSSAK 939 (1416)
T ss_pred HHHHHHHHhh
Confidence 7776666554
No 152
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=2.2e-06 Score=78.54 Aligned_cols=255 Identities=15% Similarity=0.047 Sum_probs=185.8
Q ss_pred HHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHH
Q 005603 299 YALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGI 378 (688)
Q Consensus 299 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~ 378 (688)
.-++-.|+|..++..-++..... .+.+....+...|...|++..-+.-.... .... ..+...++.
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~------------~~~~--lqAvr~~a~ 80 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEG------------KATP--LQAVRLLAE 80 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHcccccccccccccc------------cCCh--HHHHHHHHH
Confidence 34556688988888887765443 77888888999999999887655443333 1111 355566666
Q ss_pred HHHhhhhhccchHHhhHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHH
Q 005603 379 CYGNVARKSISDTERVFFQKEALESLNCAFLNE--REDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLL 456 (688)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~l 456 (688)
....-++. ++-+..+.+.+... ..+.-....-|.++...|++++|++..... .+. ++...-
T Consensus 81 ~~~~e~~~-----------~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~l-E~~Al~ 143 (299)
T KOG3081|consen 81 YLELESNK-----------KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENL-EAAALN 143 (299)
T ss_pred HhhCcchh-----------HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chH-HHHHHH
Confidence 66666665 55555555544322 233344555678899999999999887763 223 777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHhhHHhhhhccccccc
Q 005603 457 ALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQ----EQPKQAIGTYRILLAMIQAQRELHSKNFHKTKY 532 (688)
Q Consensus 457 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 532 (688)
..++.+..+++-|...++++.+.+. ...+..+|..+... ++..+|.-+|+..-+..|.
T Consensus 144 VqI~lk~~r~d~A~~~lk~mq~ide----d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~-------------- 205 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKMQQIDE----DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPP-------------- 205 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccch----HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCC--------------
Confidence 8899999999999999999988764 34455566655442 4577787788877664332
Q ss_pred cccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHH-HHHHHhcCCC
Q 005603 533 ITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVS-FSISLAIEPD 611 (688)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~-~~~al~~~p~ 611 (688)
.+.....++.+.+.+|+|++|...++.++..++.+++++.++..+-...|...++..- ..+....+|.
T Consensus 206 -----------T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 206 -----------TPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPE 274 (299)
T ss_pred -----------ChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCc
Confidence 5889999999999999999999999999999999999999999999999988776654 4555556787
Q ss_pred CHH
Q 005603 612 YIP 614 (688)
Q Consensus 612 ~~~ 614 (688)
++-
T Consensus 275 h~~ 277 (299)
T KOG3081|consen 275 HPF 277 (299)
T ss_pred chH
Confidence 763
No 153
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.89 E-value=1.1e-05 Score=86.01 Aligned_cols=225 Identities=15% Similarity=0.020 Sum_probs=112.6
Q ss_pred CCCchHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHH
Q 005603 264 PKDNVEEAILLLLILMEKVASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEA 343 (688)
Q Consensus 264 ~~~~~eea~~~l~~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 343 (688)
..+++..|+..+ ..+++++|+.+-+...-|..+.+.|..++|..+++..-...+++...+-.+-.||..+|++++
T Consensus 21 d~~qfkkal~~~-----~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 21 DSSQFKKALAKL-----GKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhHHHHHHHHHH-----HHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhH
Confidence 344555555443 455666666666666666666666666666666666555555566666666666666666666
Q ss_pred HHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005603 344 ALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGL 423 (688)
Q Consensus 344 A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 423 (688)
|..+|++++ ...|+. ...+.+=.+|.+.+.+ ..+..-|++.|+ ..|.++-.+.....
T Consensus 96 ~~~~Ye~~~---------~~~P~e---ell~~lFmayvR~~~y-------k~qQkaa~~LyK----~~pk~~yyfWsV~S 152 (932)
T KOG2053|consen 96 AVHLYERAN---------QKYPSE---ELLYHLFMAYVREKSY-------KKQQKAALQLYK----NFPKRAYYFWSVIS 152 (932)
T ss_pred HHHHHHHHH---------hhCCcH---HHHHHHHHHHHHHHHH-------HHHHHHHHHHHH----hCCcccchHHHHHH
Confidence 666666665 333332 2223333344444443 111133444443 34544433333222
Q ss_pred H-HHHcCCHHH---------HHHHHHHHHhhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhcCCCCcHHHHHH
Q 005603 424 E-HAVQRNVEA---------AFDYAIMYSDTV-AGNSGRGWKLLALILSADQRLKDAQSIVDFSL-DEAGSMDQLELLRL 491 (688)
Q Consensus 424 ~-~~~~g~~~~---------A~~~~~~~l~~~-p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~~~ 491 (688)
+ .......+. |...+++.++.. +-....-....-.++..+|++++|.+++..-+ +..+. .+......
T Consensus 153 lilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~-~~~~l~~~ 231 (932)
T KOG2053|consen 153 LILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTS-ANLYLENK 231 (932)
T ss_pred HHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccc-cchHHHHH
Confidence 2 222222222 333444444443 11110112233345556666666666663322 22221 34444445
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHH
Q 005603 492 KAVLQIAQEQPKQAIGTYRILLAMIQ 517 (688)
Q Consensus 492 la~~~~~~g~~~~A~~~~~~al~~~~ 517 (688)
....+...+++.+-.+...+++...+
T Consensus 232 ~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 232 KLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 55666666666666666666666533
No 154
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.89 E-value=2.5e-06 Score=82.49 Aligned_cols=225 Identities=22% Similarity=0.214 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 005603 396 FQKEALESLNCAFLNERE--DPEMMYYLGLEHAVQRNVEAAFDYAIMYSD--TVAGNSGRGWKLLALILSADQRLKDAQS 471 (688)
Q Consensus 396 ~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~la~~~~~~~~~~~A~~ 471 (688)
....+...+...+...+. ........+..+...+++..+...+...+. ..+... ..+...+......+++..++.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLA-EALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchH-HHHHHHHHHHHHHhhHHHHHH
Confidence 334444444444444443 244555555555555555555555555554 344444 555555555555555555555
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHH-HHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHH
Q 005603 472 IVDFSLDEAGSMDQLELLRLKAV-LQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQD 550 (688)
Q Consensus 472 ~~~~al~~~p~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (688)
.+..++...+ .........+. ++...|+++.|...+.+++...|. .......+..
T Consensus 117 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----------------------~~~~~~~~~~ 172 (291)
T COG0457 117 LLEKALALDP--DPDLAEALLALGALYELGDYEEALELYEKALELDPE----------------------LNELAEALLA 172 (291)
T ss_pred HHHHHHcCCC--CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----------------------ccchHHHHHH
Confidence 5555555544 22222223333 555555555555555555443220 0012344444
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCC
Q 005603 551 LATIYMKLGSLPDAEICTEKAKSIEFY-SPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQ 629 (688)
Q Consensus 551 la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 629 (688)
.+..+...+++++|+..+.+++...+. ....+..++..+...+++++|+..+..++...|.....+..++..+...+..
T Consensus 173 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (291)
T COG0457 173 LGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRY 252 (291)
T ss_pred hhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCH
Confidence 444455555555555555555555555 4555555555555555555555555555555555444445555555433434
Q ss_pred ChHHHHHHHHHHHHhCCC
Q 005603 630 SMPIARSFLMNALRLEPT 647 (688)
Q Consensus 630 ~~~~A~~~~~~al~~~p~ 647 (688)
+ .+...+.+++...|.
T Consensus 253 ~--~~~~~~~~~~~~~~~ 268 (291)
T COG0457 253 E--EALEALEKALELDPD 268 (291)
T ss_pred H--HHHHHHHHHHHhCcc
Confidence 4 555555555555554
No 155
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.89 E-value=7.2e-08 Score=84.77 Aligned_cols=120 Identities=17% Similarity=0.085 Sum_probs=63.9
Q ss_pred cCCHHHHHHHHHHHHhhcCCC-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCC
Q 005603 463 DQRLKDAQSIVDFSLDEAGSM-DQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVK 541 (688)
Q Consensus 463 ~~~~~~A~~~~~~al~~~p~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (688)
.++...+...++..+..+|.. ....+.+.+|.++...|++++|+..|+.++...|+ .
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d----------------------~ 81 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPD----------------------P 81 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC----------------------H
Confidence 455555555555555555521 11344455566666666666666666666554322 1
Q ss_pred cchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005603 542 NLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSIS 605 (688)
Q Consensus 542 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 605 (688)
.....+...++.++...|++++|+..++. +...+..+.++..+|.++...|++++|+..|+++
T Consensus 82 ~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 82 ELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 11244555566666666666666666644 2223334455556666666666666666666554
No 156
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.89 E-value=2.3e-09 Score=79.56 Aligned_cols=64 Identities=31% Similarity=0.484 Sum_probs=44.0
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccCCCC
Q 005603 618 STAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKLSAP 683 (688)
Q Consensus 618 ~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 683 (688)
.+|..+...|+++ +|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|++|
T Consensus 2 ~~a~~~~~~g~~~--~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYD--EAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHH--HHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHH--HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4566667777766 777777777777777777777777777777777777777777777777664
No 157
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.88 E-value=2.6e-06 Score=82.32 Aligned_cols=224 Identities=24% Similarity=0.249 Sum_probs=189.4
Q ss_pred cCCHHHHHHHHHHHHhhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hcCCCCcHHHHHHHHHHHHHcCChH
Q 005603 428 QRNVEAAFDYAIMYSDTVAGN--SGRGWKLLALILSADQRLKDAQSIVDFSLD--EAGSMDQLELLRLKAVLQIAQEQPK 503 (688)
Q Consensus 428 ~g~~~~A~~~~~~~l~~~p~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~la~~~~~~g~~~ 503 (688)
.+.+..+...+...+...+.. . ......+..+...+++..+...+...+. ..+ .....+...+......+++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 112 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLA-GLLLLLALALLKLGRLEEALELLEKALELELLP--NLAEALLNLGLLLEALGKYE 112 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccch-HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhcc--chHHHHHHHHHHHHHHhhHH
Confidence 567778888888888877763 5 7888889999999999999999999887 455 67888899999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHH-HHHHcCChhHHHHHHHHHHhcCC---CCh
Q 005603 504 QAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLAT-IYMKLGSLPDAEICTEKAKSIEF---YSP 579 (688)
Q Consensus 504 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p---~~~ 579 (688)
.++..+..++...+.. .......+. ++...|+++.|...+.+++...| ...
T Consensus 113 ~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 167 (291)
T COG0457 113 EALELLEKALALDPDP-------------------------DLAEALLALGALYELGDYEEALELYEKALELDPELNELA 167 (291)
T ss_pred HHHHHHHHHHcCCCCc-------------------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchH
Confidence 9999999999876652 223333444 89999999999999999988776 356
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005603 580 GSWHTTGMLFEAQSQYKEALVSFSISLAIEPD-YIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLI 658 (688)
Q Consensus 580 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 658 (688)
......+..+...+++++|+..+.+++...+. ....+..++..+...+++. .|...+..++...|.....+..++..
T Consensus 168 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~ 245 (291)
T COG0457 168 EALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE--EALEYYEKALELDPDNAEALYNLALL 245 (291)
T ss_pred HHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH--HHHHHHHHHHhhCcccHHHHhhHHHH
Confidence 66777777788899999999999999999998 6889999999999999888 99999999999999877888888888
Q ss_pred HHHcCCHHHHHHHHHHHHcccCC
Q 005603 659 SKMEGSLQQAADYFQAAYELKLS 681 (688)
Q Consensus 659 ~~~~g~~~~A~~~~~~al~l~p~ 681 (688)
+...|.++++...+.+++...|.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 246 LLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc
Confidence 88778899999999999988774
No 158
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=3.1e-08 Score=96.53 Aligned_cols=135 Identities=20% Similarity=0.276 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC---------------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005603 545 IATWQDLATIYMKLGSLPDAEICTEKAKSIEFYS---------------PGSWHTTGMLFEAQSQYKEALVSFSISLAIE 609 (688)
Q Consensus 545 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 609 (688)
+.....-|..|++.|+|..|...|++++..-+.. ..++.+++.++.++++|.+|+..++++|.++
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 4445677899999999999999999988754311 2358899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHcccCC
Q 005603 610 PDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQA-ADYFQAAYELKLS 681 (688)
Q Consensus 610 p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A-~~~~~~al~l~p~ 681 (688)
|++..+++..|.++..+|+++ .|+..|+++++++|+|..+...+..+-.+..++.+. .+.|.+.+..-+.
T Consensus 288 ~~N~KALyRrG~A~l~~~e~~--~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLALGEYD--LARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred CCchhHHHHHHHHHHhhccHH--HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 999999999999999999999 999999999999999999999999888777766554 7888888875553
No 159
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.84 E-value=1.2e-08 Score=75.69 Aligned_cols=64 Identities=27% Similarity=0.411 Sum_probs=40.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 005603 550 DLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYI 613 (688)
Q Consensus 550 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 613 (688)
.+|..+...|++++|+.+|++++..+|+++.+|+.+|.++..+|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4566666666666666666666666666666666666666666666666666666666666553
No 160
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.83 E-value=7.3e-07 Score=78.78 Aligned_cols=199 Identities=19% Similarity=0.164 Sum_probs=142.5
Q ss_pred hhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 005603 366 EHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTV 445 (688)
Q Consensus 366 ~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 445 (688)
+..++..++..|..|-..|-. .-|.-.|.+++.+.|.-+++...+|..+...|+++.|.+.|...++++
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~-----------~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD 129 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLR-----------ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD 129 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHH-----------HHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC
Confidence 344578888899999999988 999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHH-HHHHHHHhhHHhhh
Q 005603 446 AGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYR-ILLAMIQAQRELHS 524 (688)
Q Consensus 446 p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~-~al~~~~~~~~~~~ 524 (688)
|... -+..+.|..++--|++.-|.+-+.+-...+|+......|.. +-...-++.+|...+. ++...+.
T Consensus 130 p~y~-Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY---l~E~k~dP~~A~tnL~qR~~~~d~------- 198 (297)
T COG4785 130 PTYN-YAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLY---LNEQKLDPKQAKTNLKQRAEKSDK------- 198 (297)
T ss_pred Ccch-HHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHH---HHHhhCCHHHHHHHHHHHHHhccH-------
Confidence 9998 99999999999999999999999998888884222222222 2234456777765543 3333211
Q ss_pred hccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC-------hhHHHHHHHHHHHcCCHHH
Q 005603 525 KNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYS-------PGSWHTTGMLFEAQSQYKE 597 (688)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~ 597 (688)
...-|.... .| +|+..+ ...++++.....++ .++++.+|..+...|+.++
T Consensus 199 -------------------e~WG~~iV~-~y--LgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~ 255 (297)
T COG4785 199 -------------------EQWGWNIVE-FY--LGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDE 255 (297)
T ss_pred -------------------hhhhHHHHH-HH--HhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 122222222 22 222221 12233333332222 3567888888888888888
Q ss_pred HHHHHHHHHhcC
Q 005603 598 ALVSFSISLAIE 609 (688)
Q Consensus 598 A~~~~~~al~~~ 609 (688)
|...|+-++..+
T Consensus 256 A~~LfKLaiann 267 (297)
T COG4785 256 ATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHh
Confidence 888888877654
No 161
>PRK11906 transcriptional regulator; Provisional
Probab=98.83 E-value=3.7e-07 Score=91.45 Aligned_cols=171 Identities=15% Similarity=0.103 Sum_probs=136.1
Q ss_pred HHHHHHHHHcCC---cHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHH
Q 005603 329 YILALCYSAAGQ---NEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLN 405 (688)
Q Consensus 329 ~~la~~~~~~g~---~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 405 (688)
+..|...+..+. .+.|+.+|.+++ +..+.+|.. +.++..++.|+....-..... ......+|...-+
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~------~~~~ldp~~--a~a~~~lA~~h~~~~~~g~~~--~~~~~~~a~~~A~ 328 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQ------NKSDIQTLK--TECYCLLAECHMSLALHGKSE--LELAAQKALELLD 328 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHh------hcccCCccc--HHHHHHHHHHHHHHHHhcCCC--chHHHHHHHHHHH
Confidence 666777666653 456778888885 333555655 888999999988764432222 5566689999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCc
Q 005603 406 CAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQ 485 (688)
Q Consensus 406 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 485 (688)
++++++|.|+.++..+|.+....++++.|...|++++.++|+.. .+|+..|.+....|+.++|.+.+++++..+| ..
T Consensus 329 rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A-~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP--~~ 405 (458)
T PRK11906 329 YVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIA-SLYYYRALVHFHNEKIEEARICIDKSLQLEP--RR 405 (458)
T ss_pred HHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccH-HHHHHHHHHHHHcCCHHHHHHHHHHHhccCc--hh
Confidence 99999999999999999999999999999999999999999999 9999999999999999999999999999999 44
Q ss_pred HHHHHHHHHH-HHHcCChHHHHHHHHHH
Q 005603 486 LELLRLKAVL-QIAQEQPKQAIGTYRIL 512 (688)
Q Consensus 486 ~~~~~~la~~-~~~~g~~~~A~~~~~~a 512 (688)
..+-...-.+ .+.....++|+..|-+-
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (458)
T PRK11906 406 RKAVVIKECVDMYVPNPLKNNIKLYYKE 433 (458)
T ss_pred hHHHHHHHHHHHHcCCchhhhHHHHhhc
Confidence 4443333333 34456678888877543
No 162
>PRK11906 transcriptional regulator; Provisional
Probab=98.82 E-value=7.7e-08 Score=96.26 Aligned_cols=119 Identities=9% Similarity=0.008 Sum_probs=92.5
Q ss_pred hhHHHHHHHHHH---hcCCCChhHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC
Q 005603 561 LPDAEICTEKAK---SIEFYSPGSWHTTGMLFEAQ---------SQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGR 628 (688)
Q Consensus 561 ~~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 628 (688)
.+.|..+|.+++ .++|+.+.++..++.++... ....+|....+++++++|.++.++..+|.++...++
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 456777788888 77787788877777776543 234567777778888888888888888888888888
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccCC
Q 005603 629 QSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKLS 681 (688)
Q Consensus 629 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 681 (688)
++ .|...|++++.++|+.+.+|+..|.+....|+.++|.+.++++++++|.
T Consensus 354 ~~--~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 354 AK--VSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred hh--hHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 77 8888888888888888888888888888888888888888888888775
No 163
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.3e-07 Score=92.26 Aligned_cols=101 Identities=18% Similarity=0.190 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005603 545 IATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILM 624 (688)
Q Consensus 545 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 624 (688)
..++.+++.++.++++|.+|+..+.++|.++|+|..+++..|.++..+|+++.|+..|++++++.|++-.+...+..+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HhCCCChHHHHHHHHHHHHhCC
Q 005603 625 KLGRQSMPIARSFLMNALRLEP 646 (688)
Q Consensus 625 ~~g~~~~~~A~~~~~~al~~~p 646 (688)
+...+. +...+.|.+++...+
T Consensus 337 k~~~~~-~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 337 KIREYE-EKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHH-HHHHHHHHHHhhccc
Confidence 777765 466888888887644
No 164
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=7.2e-08 Score=90.81 Aligned_cols=107 Identities=21% Similarity=0.194 Sum_probs=99.0
Q ss_pred CcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHH
Q 005603 541 KNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQS---QYKEALVSFSISLAIEPDYIPSII 617 (688)
Q Consensus 541 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~ 617 (688)
+|.+.+-|..||.+|+..|+++.|...|.+++++.|++++.+..+|.++..+. ...++...+++++..+|+++.+.+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 44589999999999999999999999999999999999999999999877654 467899999999999999999999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCCCH
Q 005603 618 STAEILMKLGRQSMPIARSFLMNALRLEPTNH 649 (688)
Q Consensus 618 ~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~ 649 (688)
.+|..++..|++. +|...++..+...|.+.
T Consensus 232 lLA~~afe~g~~~--~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 232 LLAFAAFEQGDYA--EAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHcccHH--HHHHHHHHHHhcCCCCC
Confidence 9999999999999 99999999999887653
No 165
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.81 E-value=7e-09 Score=81.46 Aligned_cols=81 Identities=22% Similarity=0.329 Sum_probs=52.1
Q ss_pred cCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005603 592 QSQYKEALVSFSISLAIEPD--YIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAA 669 (688)
Q Consensus 592 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 669 (688)
+|++++|+..++++++..|. +...++.+|.++++.|+++ +|+..+++ .+.+|.++..++.+|.++..+|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~--~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYE--EAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHH--HHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHH--HHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 46666777777777666663 3445556677777777766 67777666 5566666666666677777777777777
Q ss_pred HHHHHH
Q 005603 670 DYFQAA 675 (688)
Q Consensus 670 ~~~~~a 675 (688)
.+|+++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 766654
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.80 E-value=1.8e-08 Score=79.15 Aligned_cols=83 Identities=20% Similarity=0.219 Sum_probs=58.3
Q ss_pred cCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 005603 499 QEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYS 578 (688)
Q Consensus 499 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 578 (688)
+|+++.|+..+++++...|. .+ +...++.+|.+|+..|++++|+.++++ ...+|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~----------------------~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~ 57 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT----------------------NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN 57 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG----------------------TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH
T ss_pred CccHHHHHHHHHHHHHHCCC----------------------Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC
Confidence 56777777777777777653 11 355666677777777777777777777 6666766
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005603 579 PGSWHTTGMLFEAQSQYKEALVSFSIS 605 (688)
Q Consensus 579 ~~~~~~lg~~~~~~g~~~~A~~~~~~a 605 (688)
....+.+|.++..+|++++|+..|+++
T Consensus 58 ~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 58 PDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 677777777777777777777777654
No 167
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.80 E-value=0.00018 Score=77.12 Aligned_cols=199 Identities=14% Similarity=0.062 Sum_probs=133.1
Q ss_pred CccCCCchHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCC
Q 005603 261 PIAPKDNVEEAILLLLILMEKVASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQ 340 (688)
Q Consensus 261 ~~~~~~~~eea~~~l~~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 340 (688)
.....|..+||..++ +..-...++|...+..+-.+|...|++++|..+|+++....|. .+..+.+-.+|.+-+.
T Consensus 52 sl~r~gk~~ea~~~L-----e~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~ 125 (932)
T KOG2053|consen 52 SLFRLGKGDEALKLL-----EALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKS 125 (932)
T ss_pred HHHHhcCchhHHHHH-----hhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHH
Confidence 445677888887554 3333444568889999999999999999999999999999998 8888999999999888
Q ss_pred cHH----HHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcC-CCCH
Q 005603 341 NEA----ALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNE-REDP 415 (688)
Q Consensus 341 ~~~----A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~ 415 (688)
|.+ |+++|+.. +.+ ..+++-......++..........-...-|....++.++.. +-..
T Consensus 126 yk~qQkaa~~LyK~~----------pk~------~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s 189 (932)
T KOG2053|consen 126 YKKQQKAALQLYKNF----------PKR------AYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIES 189 (932)
T ss_pred HHHHHHHHHHHHHhC----------Ccc------cchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccch
Confidence 875 33444422 222 22333333333344332221111233345666777777655 3222
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHH-HHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 005603 416 -EMMYYLGLEHAVQRNVEAAFDYAI-MYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAG 481 (688)
Q Consensus 416 -~~~~~la~~~~~~g~~~~A~~~~~-~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 481 (688)
.-....-.++..+|++++|...+. ...+..+.-....-......+...+++.+-.++..+++...+
T Consensus 190 ~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 190 EAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 122333456778999999999994 334444433314445667788889999999999999999988
No 168
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.79 E-value=0.00029 Score=71.33 Aligned_cols=369 Identities=12% Similarity=0.034 Sum_probs=220.8
Q ss_pred HHHhhhcCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhH--------
Q 005603 281 KVASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQ-------- 352 (688)
Q Consensus 281 ~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l-------- 352 (688)
+..++.+|.|...|+.|..-+..+ .++++...+++.+...|..+.+|.......+...+|+.-..+|.+++
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDL 88 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDL 88 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhH
Confidence 345678899999999998877666 99999999999999999999999999999999999999999999998
Q ss_pred ------HHHHhHhhhcc------------------cchhhHHHHHHHHHHHHH---------hhhhhcc-----------
Q 005603 353 ------VSRGVIQSTTS------------------QKEHFLAEAYKFLGICYG---------NVARKSI----------- 388 (688)
Q Consensus 353 ------~~~~~~~~~~~------------------~~~~~~~~~~~~lg~~~~---------~~~~~~~----------- 388 (688)
|.++.-....+ +... ...|...+..+. .+.+...
T Consensus 89 W~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s--~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 89 WKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKS--YSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred HHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCccc--chhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 11100000000 0000 000000000000 0000000
Q ss_pred --------------------------chHHhhHHHHHHHHHHHHHHHcC-------CC----C-------HHHHHHHHHH
Q 005603 389 --------------------------SDTERVFFQKEALESLNCAFLNE-------RE----D-------PEMMYYLGLE 424 (688)
Q Consensus 389 --------------------------~~~~~~~~~~~A~~~~~~al~~~-------p~----~-------~~~~~~la~~ 424 (688)
...+++..+..|...+++...+- |. . .+.|.++...
T Consensus 167 Pm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w 246 (656)
T KOG1914|consen 167 PMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW 246 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 01112333444444444443211 11 0 1123222211
Q ss_pred HHHc------CCH--HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhcCC
Q 005603 425 HAVQ------RNV--EAAFDYAIMYSDTVAGNSGRGWKLLALILSADQR--------------LKDAQSIVDFSLDEAGS 482 (688)
Q Consensus 425 ~~~~------g~~--~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~al~~~p~ 482 (688)
-... |.. ..-.-.+++++..-+-.+ +.|+..+..+...++ -+++..+++++++....
T Consensus 247 EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~p-eiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~ 325 (656)
T KOG1914|consen 247 EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHP-EIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLK 325 (656)
T ss_pred HhcCCcccccccHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 1111 110 112233555665566666 666665555544444 56666677766654331
Q ss_pred CCcHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcC
Q 005603 483 MDQLELLRLKAVLQIAQEQ---PKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLG 559 (688)
Q Consensus 483 ~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 559 (688)
.+..+++.++..-...-+ .+.....+++++..... . -.-+|..+-+.-.+..
T Consensus 326 -~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~----------------------~--~tLv~~~~mn~irR~e 380 (656)
T KOG1914|consen 326 -ENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDI----------------------D--LTLVYCQYMNFIRRAE 380 (656)
T ss_pred -HHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhcc----------------------C--CceehhHHHHHHHHhh
Confidence 233333333333222222 44555556666554222 1 1334555555556666
Q ss_pred ChhHHHHHHHHHHhcCCCChhHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 005603 560 SLPDAEICTEKAKSIEFYSPGSWHTTGML-FEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFL 638 (688)
Q Consensus 560 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~ 638 (688)
-...|...|.++-+..-....++..-|.+ |...++..-|...|+-.++..++.+..-......+..+++-+ .|+..|
T Consensus 381 GlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~--N~R~LF 458 (656)
T KOG1914|consen 381 GLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDN--NARALF 458 (656)
T ss_pred hHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcch--hHHHHH
Confidence 67888899998877554444555444443 556789999999999999999999998888889999999988 999999
Q ss_pred HHHHHh--CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccC
Q 005603 639 MNALRL--EPT-NHDAWMNLGLISKMEGSLQQAADYFQAAYELKL 680 (688)
Q Consensus 639 ~~al~~--~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 680 (688)
++++.. .|+ ...+|...-..-..-|+....++.=++-....|
T Consensus 459 Er~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 459 ERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 999987 333 347888877777888988888877666655555
No 169
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.79 E-value=2.4e-07 Score=91.51 Aligned_cols=98 Identities=14% Similarity=0.186 Sum_probs=41.1
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHhcCC--C----CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC------
Q 005603 582 WHTTGMLFEAQ-SQYKEALVSFSISLAIEP--D----YIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTN------ 648 (688)
Q Consensus 582 ~~~lg~~~~~~-g~~~~A~~~~~~al~~~p--~----~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~------ 648 (688)
+..+|.+|... |++++|+++|++|+.... + ...++..+|.++.+.|+++ +|+..|+++....-++
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~--~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYE--EAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HH--HHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHhhcccccchh
Confidence 44444444444 455555555555444311 0 0123344455555555544 5555555544422110
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHcccCC
Q 005603 649 -HDAWMNLGLISKMEGSLQQAADYFQAAYELKLS 681 (688)
Q Consensus 649 -~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 681 (688)
...++..+.++...|++..|...|++....+|+
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 112333444445555555555555555544443
No 170
>PRK15331 chaperone protein SicA; Provisional
Probab=98.79 E-value=8.4e-08 Score=82.36 Aligned_cols=109 Identities=12% Similarity=0.155 Sum_probs=99.1
Q ss_pred cCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 005603 539 SVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIIS 618 (688)
Q Consensus 539 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 618 (688)
...+...+..+..|.-+...|++++|...|+-....+|.++..|..||.++..+++|++|+..|..+..++++++...+.
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 33455788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCCCHH
Q 005603 619 TAEILMKLGRQSMPIARSFLMNALRLEPTNHD 650 (688)
Q Consensus 619 la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~ 650 (688)
.|.++..+|+.+ .|+..|+.++. .|.+..
T Consensus 111 agqC~l~l~~~~--~A~~~f~~a~~-~~~~~~ 139 (165)
T PRK15331 111 TGQCQLLMRKAA--KARQCFELVNE-RTEDES 139 (165)
T ss_pred HHHHHHHhCCHH--HHHHHHHHHHh-CcchHH
Confidence 999999999998 99999999998 455443
No 171
>PRK15331 chaperone protein SicA; Provisional
Probab=98.79 E-value=3.5e-08 Score=84.67 Aligned_cols=110 Identities=13% Similarity=0.014 Sum_probs=100.4
Q ss_pred HHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCH
Q 005603 570 KAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNH 649 (688)
Q Consensus 570 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~ 649 (688)
.+..+.++.-+..+..|.-+...|++++|...|+-....+|.++..|+.||.++..+++++ +|+..|..+..+++++|
T Consensus 28 ~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~--~Ai~~Y~~A~~l~~~dp 105 (165)
T PRK15331 28 DVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQ--KACDLYAVAFTLLKNDY 105 (165)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcccCCC
Confidence 3444555666778899999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcccCCC
Q 005603 650 DAWMNLGLISKMEGSLQQAADYFQAAYELKLSA 682 (688)
Q Consensus 650 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 682 (688)
...+..|.++..+|+.+.|..+|+.++. .|.+
T Consensus 106 ~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 106 RPVFFTGQCQLLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred CccchHHHHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence 9999999999999999999999999998 3443
No 172
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.77 E-value=4.2e-05 Score=73.98 Aligned_cols=296 Identities=18% Similarity=0.110 Sum_probs=214.6
Q ss_pred HHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHc
Q 005603 331 LALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLN 410 (688)
Q Consensus 331 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 410 (688)
-|.+-...|+-..|.+.-++.- ..+..+ .. +-++..-+..-...|++ +.|.+-|+.++.
T Consensus 90 tGliAagAGda~lARkmt~~~~------~llssD-qe--pLIhlLeAQaal~eG~~-----------~~Ar~kfeAMl~- 148 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARAS------KLLSSD-QE--PLIHLLEAQAALLEGDY-----------EDARKKFEAMLD- 148 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHH------hhhhcc-ch--HHHHHHHHHHHHhcCch-----------HHHHHHHHHHhc-
Confidence 3566667788888888777663 112222 22 56777778888888999 999999998873
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-C----
Q 005603 411 ERED-PEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSM-D---- 484 (688)
Q Consensus 411 ~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~---- 484 (688)
+|.. .--+..|-..-...|..+.|+.+.+.+....|.-+ .++...-...+..|+++.|+++.+......--. +
T Consensus 149 dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~-WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR 227 (531)
T COG3898 149 DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLP-WAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAER 227 (531)
T ss_pred ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCc-hHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHH
Confidence 2321 11122233344678999999999999999999988 888888888899999999999998766432210 1
Q ss_pred -cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhH
Q 005603 485 -QLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPD 563 (688)
Q Consensus 485 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 563 (688)
...++...+... ...++..|...-.++.++.|+ ....-..-+..++..|+..+
T Consensus 228 ~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~pd-------------------------lvPaav~AAralf~d~~~rK 281 (531)
T COG3898 228 SRAVLLTAKAMSL-LDADPASARDDALEANKLAPD-------------------------LVPAAVVAARALFRDGNLRK 281 (531)
T ss_pred HHHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCc-------------------------cchHHHHHHHHHHhccchhh
Confidence 111222222222 234577888888888888665 56677778899999999999
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 005603 564 AEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSIS---LAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMN 640 (688)
Q Consensus 564 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a---l~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~ 640 (688)
+-..++.+.+..|. +.+ +.+|....--+.++.-++++ -.+.|++.++....+..-..-|++. .|..--+.
T Consensus 282 g~~ilE~aWK~ePH-P~i----a~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~--~ARa~Aea 354 (531)
T COG3898 282 GSKILETAWKAEPH-PDI----ALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFS--AARAKAEA 354 (531)
T ss_pred hhhHHHHHHhcCCC-hHH----HHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchH--HHHHHHHH
Confidence 99999999999884 433 33444433334455444444 4568999999999999999999998 99999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcccCCCC
Q 005603 641 ALRLEPTNHDAWMNLGLISKME-GSLQQAADYFQAAYELKLSAP 683 (688)
Q Consensus 641 al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~~~ 683 (688)
+....|.. .++..++.+-... |+-.+...++.+++. .|.+|
T Consensus 355 a~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~-APrdP 396 (531)
T COG3898 355 AAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVK-APRDP 396 (531)
T ss_pred HhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhc-CCCCC
Confidence 99999864 5777888888766 999999999999986 34443
No 173
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.77 E-value=1.1e-08 Score=96.13 Aligned_cols=223 Identities=14% Similarity=0.020 Sum_probs=151.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHH
Q 005603 418 MYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQI 497 (688)
Q Consensus 418 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~ 497 (688)
+-..|..|+++|+|++|+++|.+.+..+|.++ ..+.+.+..|+++++|..|+.-++.++.++. ....+|...+..-.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~Np-V~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~--~Y~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNP-VYHINRALAYLKQKSFAQAEEDCEAAIALDK--LYVKAYSRRMQARE 176 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCc-cchhhHHHHHHHHHHHHHHHHhHHHHHHhhH--HHHHHHHHHHHHHH
Confidence 45678899999999999999999999999998 9999999999999999999999999999987 67888999999999
Q ss_pred HcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhH-------------H
Q 005603 498 AQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPD-------------A 564 (688)
Q Consensus 498 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-------------A 564 (688)
.+|...+|.+-++.++.+.|+..+.. -.++ ......+ |
T Consensus 177 ~Lg~~~EAKkD~E~vL~LEP~~~ELk-------------------------K~~a----~i~Sl~E~~I~~KsT~G~~~A 227 (536)
T KOG4648|consen 177 SLGNNMEAKKDCETVLALEPKNIELK-------------------------KSLA----RINSLRERKIATKSTPGFTPA 227 (536)
T ss_pred HHhhHHHHHHhHHHHHhhCcccHHHH-------------------------HHHH----HhcchHhhhHHhhcCCCCCcc
Confidence 99999999999999999987742221 1111 1111111 1
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 005603 565 EICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRL 644 (688)
Q Consensus 565 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~ 644 (688)
..-..+++. .-.-|..+...|.++.++.++.+-+....++.....+ +..+.+.-+++ .++....+++..
T Consensus 228 ~Q~~~Q~l~--------~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~--~~~~~~~~~~~~ 296 (536)
T KOG4648|consen 228 RQGMIQILP--------IKKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSN--CGIIEEVKKTNP 296 (536)
T ss_pred ccchhhhcc--------ccCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcc--hhHHHHHHhcCC
Confidence 111111111 1112444555666666666666555444333333333 45555666666 666666666666
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccCCCC
Q 005603 645 EPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKLSAP 683 (688)
Q Consensus 645 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 683 (688)
+|.........|.+-.-.|...++...|+.++.+.|.+.
T Consensus 297 ~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~ 335 (536)
T KOG4648|consen 297 KPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVE 335 (536)
T ss_pred CCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccc
Confidence 665544444455555555666777777777777776554
No 174
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.76 E-value=1.1e-07 Score=91.25 Aligned_cols=104 Identities=14% Similarity=0.081 Sum_probs=61.8
Q ss_pred HHHHHHHHHHH-HHcCChhHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHH
Q 005603 545 IATWQDLATIY-MKLGSLPDAEICTEKAKSIEFYS---PGSWHTTGMLFEAQSQYKEALVSFSISLAIEPD---YIPSII 617 (688)
Q Consensus 545 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~ 617 (688)
...++..|..+ ...|+|++|+..|++.+...|++ +.+++.+|.+|...|++++|+..|+++++..|+ .+.+++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34445555443 44566666666666666666655 356666666666666666666666666655554 345566
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHH
Q 005603 618 STAEILMKLGRQSMPIARSFLMNALRLEPTNHD 650 (688)
Q Consensus 618 ~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~ 650 (688)
.+|.++...|+++ +|+..|+++++..|++..
T Consensus 222 klg~~~~~~g~~~--~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 222 KVGVIMQDKGDTA--KAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHcCCHH--HHHHHHHHHHHHCcCCHH
Confidence 6666666666665 666666666666665543
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.73 E-value=3.2e-07 Score=97.16 Aligned_cols=85 Identities=11% Similarity=0.106 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhc--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 005603 563 DAEICTEKAKSI--EFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMN 640 (688)
Q Consensus 563 ~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~ 640 (688)
.+.....+++.+ +|.++.++..+|..+...|++++|...+++++.++| +..+|..+|.++...|+.+ +|+..|++
T Consensus 402 ~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~--eA~~~~~~ 478 (517)
T PRK10153 402 ALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNR--LAADAYST 478 (517)
T ss_pred HHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHH--HHHHHHHH
Confidence 334444444442 455556666666666666777777777777777776 3566677777777777766 77777777
Q ss_pred HHHhCCCCHH
Q 005603 641 ALRLEPTNHD 650 (688)
Q Consensus 641 al~~~p~~~~ 650 (688)
++.++|.++.
T Consensus 479 A~~L~P~~pt 488 (517)
T PRK10153 479 AFNLRPGENT 488 (517)
T ss_pred HHhcCCCCch
Confidence 7777766653
No 176
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=1.7e-05 Score=78.70 Aligned_cols=361 Identities=17% Similarity=0.106 Sum_probs=228.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcc---cchhhHHH
Q 005603 295 DHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTS---QKEHFLAE 371 (688)
Q Consensus 295 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~---~~~~~~~~ 371 (688)
......+.+..+...+..-.+.++....+.+...+..+..++..|++..|.+++...- +...++ .|.-....
T Consensus 210 ~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sn-----i~~~~g~~~T~q~~~ci 284 (696)
T KOG2471|consen 210 LYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSN-----IHKEAGGTITPQLSSCI 284 (696)
T ss_pred HhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcc-----cccccCccccchhhhhe
Confidence 3345556777778888888888888888889999999999999999999999887662 011111 12222345
Q ss_pred HHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHH-c--------CC---------CCHHHHHHHHHHHHHcCCHHH
Q 005603 372 AYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFL-N--------ER---------EDPEMMYYLGLEHAVQRNVEA 433 (688)
Q Consensus 372 ~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~--------~p---------~~~~~~~~la~~~~~~g~~~~ 433 (688)
.|..+|-++...+.+ .-+..+|.++++ . .| ..-.++|+.|..|...|++-.
T Consensus 285 f~NNlGcIh~~~~~y-----------~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~ 353 (696)
T KOG2471|consen 285 FNNNLGCIHYQLGCY-----------QASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLL 353 (696)
T ss_pred eecCcceEeeehhhH-----------HHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHH
Confidence 678999999999999 888888888884 1 11 235789999999999999999
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHH-Hhh--cCCCCcHHHHHHHHHHHHHcC-------
Q 005603 434 AFDYAIMYSDTVAGNSGRGWKLLALILSADQR---LKDAQSIVDFS-LDE--AGSMDQLELLRLKAVLQIAQE------- 500 (688)
Q Consensus 434 A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~---~~~A~~~~~~a-l~~--~p~~~~~~~~~~la~~~~~~g------- 500 (688)
|.++|.++......+| ..|..++.+.....+ .++-.....+. +.. -.+...-.++.. -..+...+
T Consensus 354 AfqCf~~av~vfh~nP-rlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~-~nt~~~~~qS~~~p~ 431 (696)
T KOG2471|consen 354 AFQCFQKAVHVFHRNP-RLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIE-ENTYVELAQSNQLPK 431 (696)
T ss_pred HHHHHHHHHHHHhcCc-HHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeec-ccceeccccccCCCc
Confidence 9999999999999999 999999988754321 11111111100 000 000000000000 00000001
Q ss_pred -ChHHHHHHHHHHHHHHHhhHH---hhhhccc---cc------------------cccccccccCCcc--------hHHH
Q 005603 501 -QPKQAIGTYRILLAMIQAQRE---LHSKNFH---KT------------------KYITSEAPSVKNL--------EIAT 547 (688)
Q Consensus 501 -~~~~A~~~~~~al~~~~~~~~---~~~~~~~---~~------------------~~~~~~~~~~~~~--------~~~~ 547 (688)
-.+-|.-+++.++-+.|...+ .+..... .+ +..+.......|. ...+
T Consensus 432 ~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai 511 (696)
T KOG2471|consen 432 LSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAI 511 (696)
T ss_pred cccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHH
Confidence 123455566666655533211 1111100 00 0111112222232 2345
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHH-----HHcCCHHHHHHHHHHHH------h---------
Q 005603 548 WQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLF-----EAQSQYKEALVSFSISL------A--------- 607 (688)
Q Consensus 548 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-----~~~g~~~~A~~~~~~al------~--------- 607 (688)
+.+.+.+-..+|+.-.|+..-.+.++. |+...++..+|.+| ..+.+..+|...+.--+ .
T Consensus 512 ~A~~ayV~L~Lgd~i~AL~~a~kLLq~-~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~ 590 (696)
T KOG2471|consen 512 FANMAYVELELGDPIKALSAATKLLQL-ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFD 590 (696)
T ss_pred HHHHHHHHHHhcChhhHHHHHHHHHhh-hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhh
Confidence 566777888899999999999998875 45566666666665 45677777777654311 0
Q ss_pred --------cCCC----------C-----HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHc
Q 005603 608 --------IEPD----------Y-----IPSIISTAEILMKLGRQSMPIARSFLMNALRLEP--TNHDAWMNLGLISKME 662 (688)
Q Consensus 608 --------~~p~----------~-----~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~ 662 (688)
++|. . ...++++|.++.-+|.++ +|...+..+..+-+ .++.+......+-.++
T Consensus 591 ~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~d--qAk~ll~~aatl~hs~v~~~A~~lavyidL~~ 668 (696)
T KOG2471|consen 591 QWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHD--QAKSLLTHAATLLHSLVNVQATVLAVYIDLML 668 (696)
T ss_pred hhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccH--HHHHHHHHHHHhhhccccHHHHHHHHHHHHhc
Confidence 0111 1 134678999999999998 99999999888776 4556666666666889
Q ss_pred CCHHHHHHHHHHHH
Q 005603 663 GSLQQAADYFQAAY 676 (688)
Q Consensus 663 g~~~~A~~~~~~al 676 (688)
|+.+.|...+++.-
T Consensus 669 G~~q~al~~lk~~~ 682 (696)
T KOG2471|consen 669 GRSQDALARLKQCT 682 (696)
T ss_pred CCCcchHHHHHhcc
Confidence 99999988887753
No 177
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.71 E-value=3.9e-07 Score=87.57 Aligned_cols=108 Identities=11% Similarity=-0.023 Sum_probs=59.0
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHhhcCCC-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccc
Q 005603 451 RGWKLLALIL-SADQRLKDAQSIVDFSLDEAGSM-DQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFH 528 (688)
Q Consensus 451 ~~~~~la~~~-~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 528 (688)
..++..+..+ ...|+|++|+..|+..+...|+. ..+.+++.+|.+|...|++++|+..|++++..+|+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~---------- 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK---------- 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----------
Confidence 3444444433 33455555555555555555521 11345556666666666666666666666655554
Q ss_pred cccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChh
Q 005603 529 KTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPG 580 (688)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 580 (688)
++..+++++.+|.++...|++++|...|+++++..|++..
T Consensus 213 ------------s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 213 ------------SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred ------------CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 3444556666666666666666666666666666665543
No 178
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.70 E-value=0.0004 Score=72.44 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccCC
Q 005603 648 NHDAWMNLGLISKMEGSLQQAADYFQAAYELKLS 681 (688)
Q Consensus 648 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 681 (688)
.+.++..++..+...|++++|-..|-.+++++.-
T Consensus 994 ~~~vhlk~a~~ledegk~edaskhyveaiklnty 1027 (1636)
T KOG3616|consen 994 MGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTY 1027 (1636)
T ss_pred CccchhHHhhhhhhccchhhhhHhhHHHhhcccc
Confidence 3567778888888899999999999988887653
No 179
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.67 E-value=1.9e-06 Score=76.19 Aligned_cols=204 Identities=15% Similarity=0.108 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHH
Q 005603 325 AERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESL 404 (688)
Q Consensus 325 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~ 404 (688)
...++..|..|-..|-..-|...|.+++ ...|.. +.++..+|..+...|++ +.|.+.|
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaL---------ai~P~m--~~vfNyLG~Yl~~a~~f-----------daa~eaF 122 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQAL---------AIRPDM--PEVFNYLGIYLTQAGNF-----------DAAYEAF 122 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhh---------hcCCCc--HHHHHHHHHHHHhcccc-----------hHHHHHh
Confidence 4556667778888888888888888886 334544 78999999999999999 9999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH-HHHHhhcCCC
Q 005603 405 NCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIV-DFSLDEAGSM 483 (688)
Q Consensus 405 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~-~~al~~~p~~ 483 (688)
...++++|.+.-+..+.|..+.-.|++.-|.+.+.+..+.+|.+|..++ .+=. -...-+..+|...+ +++...+.
T Consensus 123 ds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~L-WLYl-~E~k~dP~~A~tnL~qR~~~~d~-- 198 (297)
T COG4785 123 DSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSL-WLYL-NEQKLDPKQAKTNLKQRAEKSDK-- 198 (297)
T ss_pred hhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHH-HHHH-HHhhCCHHHHHHHHHHHHHhccH--
Confidence 9999999999999999999999999999999999999999999983222 1111 12334556666544 34443332
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhH
Q 005603 484 DQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPD 563 (688)
Q Consensus 484 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 563 (688)
....|+... ...|+..+ ...++++.....++ ..+.. .-.++++.+|..+...|+.++
T Consensus 199 -e~WG~~iV~---~yLgkiS~-e~l~~~~~a~a~~n-~~~Ae-----------------~LTEtyFYL~K~~l~~G~~~~ 255 (297)
T COG4785 199 -EQWGWNIVE---FYLGKISE-ETLMERLKADATDN-TSLAE-----------------HLTETYFYLGKYYLSLGDLDE 255 (297)
T ss_pred -hhhhHHHHH---HHHhhccH-HHHHHHHHhhccch-HHHHH-----------------HHHHHHHHHHHHHhccccHHH
Confidence 222232222 22233221 12233333322221 11111 147889999999999999999
Q ss_pred HHHHHHHHHhcCCC
Q 005603 564 AEICTEKAKSIEFY 577 (688)
Q Consensus 564 A~~~~~~al~~~p~ 577 (688)
|...|+-++..+-.
T Consensus 256 A~~LfKLaiannVy 269 (297)
T COG4785 256 ATALFKLAVANNVY 269 (297)
T ss_pred HHHHHHHHHHHhHH
Confidence 99999999886543
No 180
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.66 E-value=0.00014 Score=70.43 Aligned_cols=289 Identities=12% Similarity=0.002 Sum_probs=213.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHH
Q 005603 297 LTYALSVTGQFELLAEYVEQALPGIYNR--AERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYK 374 (688)
Q Consensus 297 l~~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 374 (688)
-|.+..-.|+-..|.+.-.+.-+.-..+ +-++..-++.-.-.|+++.|.+-|+.++ ..|. ....-
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl----------~dPE---tRllG 156 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAML----------DDPE---TRLLG 156 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHh----------cChH---HHHHh
Confidence 3455566788888888888776544333 4455566788889999999999999997 2222 23333
Q ss_pred HHHHH--HHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHH
Q 005603 375 FLGIC--YGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRG 452 (688)
Q Consensus 375 ~lg~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 452 (688)
..|.. -...|.. +.|+.+-+.+....|.-+.++...-...+..|+|+.|++..+......--....+
T Consensus 157 LRgLyleAqr~Gar-----------eaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~a 225 (531)
T COG3898 157 LRGLYLEAQRLGAR-----------EAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVA 225 (531)
T ss_pred HHHHHHHHHhcccH-----------HHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhH
Confidence 33332 2344555 9999999999999999999998888899999999999999987665422111022
Q ss_pred -----HHHHHHHH-HHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhc
Q 005603 453 -----WKLLALIL-SADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKN 526 (688)
Q Consensus 453 -----~~~la~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 526 (688)
...-+... .-.-+...|...-.++.++.| +....-..-+..++..|+..++-.+++.+.+..|.
T Consensus 226 eR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~p--dlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-------- 295 (531)
T COG3898 226 ERSRAVLLTAKAMSLLDADPASARDDALEANKLAP--DLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-------- 295 (531)
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC--ccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC--------
Confidence 22222221 223568889999999999999 78888888899999999999999999999998664
Q ss_pred cccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHH---HhcCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 005603 527 FHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKA---KSIEFYSPGSWHTTGMLFEAQSQYKEALVSFS 603 (688)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a---l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 603 (688)
+.+ +.+|....--+.++.-++++ ..+.|++.......+..-..-|++..|...-+
T Consensus 296 ------------------P~i----a~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Ae 353 (531)
T COG3898 296 ------------------PDI----ALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAE 353 (531)
T ss_pred ------------------hHH----HHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHH
Confidence 433 34444444444555555544 45679999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHh
Q 005603 604 ISLAIEPDYIPSIISTAEILMKL-GRQSMPIARSFLMNALRL 644 (688)
Q Consensus 604 ~al~~~p~~~~~~~~la~~~~~~-g~~~~~~A~~~~~~al~~ 644 (688)
.+....|.. .++..++.+-... |+.. ++..++-++++-
T Consensus 354 aa~r~~pre-s~~lLlAdIeeAetGDqg--~vR~wlAqav~A 392 (531)
T COG3898 354 AAAREAPRE-SAYLLLADIEEAETGDQG--KVRQWLAQAVKA 392 (531)
T ss_pred HHhhhCchh-hHHHHHHHHHhhccCchH--HHHHHHHHHhcC
Confidence 999998874 4666777777655 9988 999999999874
No 181
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.65 E-value=7.1e-07 Score=90.20 Aligned_cols=124 Identities=15% Similarity=0.113 Sum_probs=112.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q 005603 548 WQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLG 627 (688)
Q Consensus 548 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 627 (688)
...+-.++...++++.|+..+++..+.+|+ +...++.++...++-.+|+..+.++++..|.+...+...+..+.+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 344556666778999999999999988865 66678999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005603 628 RQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAY 676 (688)
Q Consensus 628 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 676 (688)
+++ .|+...+++....|++...|+.|+.+|...|++++|+..++.+-
T Consensus 249 ~~~--lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYE--LALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHH--HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 998 99999999999999999999999999999999999998777543
No 182
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.64 E-value=6.1e-07 Score=74.37 Aligned_cols=96 Identities=23% Similarity=0.183 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHH
Q 005603 546 ATWQDLATIYMKLGSLPDAEICTEKAKSIEFYS---PGSWHTTGMLFEAQSQYKEALVSFSISLAIEPD---YIPSIIST 619 (688)
Q Consensus 546 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l 619 (688)
.+++.+|.++-..|+.++|+.+|++++...... ..++..+|..+...|++++|+..+++++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 467788888888888888888888888865443 457888888888888888888888888888777 66777778
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHH
Q 005603 620 AEILMKLGRQSMPIARSFLMNALR 643 (688)
Q Consensus 620 a~~~~~~g~~~~~~A~~~~~~al~ 643 (688)
+.++...|+.+ +|+..+-.++.
T Consensus 82 Al~L~~~gr~~--eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPK--EALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHH--HHHHHHHHHHH
Confidence 88888888888 88888776664
No 183
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.62 E-value=8.6e-06 Score=75.28 Aligned_cols=175 Identities=16% Similarity=0.084 Sum_probs=129.1
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHH
Q 005603 485 QLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDA 564 (688)
Q Consensus 485 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 564 (688)
.+..++..|...+..|++++|+..|+.+....|. .|....+...++.++.+.+++++|
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~----------------------s~~~~qa~l~l~yA~Yk~~~y~~A 90 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPF----------------------SPYSEQAQLDLAYAYYKNGEYDLA 90 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----------------------CcccHHHHHHHHHHHHhcccHHHH
Confidence 4667788888888888888888888888877665 455677888888888888888888
Q ss_pred HHHHHHHHhcCCCChh---HHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCCCHH-----------------HH
Q 005603 565 EICTEKAKSIEFYSPG---SWHTTGMLFEAQ--------SQYKEALVSFSISLAIEPDYIP-----------------SI 616 (688)
Q Consensus 565 ~~~~~~al~~~p~~~~---~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p~~~~-----------------~~ 616 (688)
+...++-+.+.|.++. +++..|.++... .-..+|+..|+..+...|+..- --
T Consensus 91 ~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~E 170 (254)
T COG4105 91 LAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHE 170 (254)
T ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 8888888888886654 466667665432 2245677788888888887421 12
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHcccCCCC
Q 005603 617 ISTAEILMKLGRQSMPIARSFLMNALRLEPTN---HDAWMNLGLISKMEGSLQQAADYFQAAYELKLSAP 683 (688)
Q Consensus 617 ~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 683 (688)
...|..|.+.|.+. .|+..++.+++..|+. .+++..+..+|..+|-.++|...-+-.-.-.|+++
T Consensus 171 m~IaryY~kr~~~~--AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 171 MAIARYYLKRGAYV--AAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHHhcChH--HHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 34677888888887 8888899998887664 46788888899999998888776554444455554
No 184
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.62 E-value=9e-06 Score=70.26 Aligned_cols=129 Identities=18% Similarity=0.114 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHh-cCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHH
Q 005603 545 IATWQDLATIYMKLGSLPDAEICTEKAKS-IEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPD--YIPSIISTAE 621 (688)
Q Consensus 545 ~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~ 621 (688)
..-.+.+|......|++.||...|++++. +...++..+..++......+++..|...+++..+.+|. .+.....+|.
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR 168 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFAR 168 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHH
Confidence 55667889999999999999999998876 55677888888999999999999999999999888775 5677888899
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005603 622 ILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAY 676 (688)
Q Consensus 622 ~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 676 (688)
++...|++. +|...|+.++...|+ +.+....+..+.++|+..+|..-+....
T Consensus 169 ~laa~g~~a--~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 169 TLAAQGKYA--DAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHhcCCch--hHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 999999988 899999999998886 5677778888888998777776655443
No 185
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.60 E-value=7.7e-07 Score=89.95 Aligned_cols=124 Identities=15% Similarity=0.078 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHH
Q 005603 488 LLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEIC 567 (688)
Q Consensus 488 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 567 (688)
+.-.+..++...++++.|+..++++.+. ++++...++.++...++-.+|+..
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~----------------------------~pev~~~LA~v~l~~~~E~~AI~l 222 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER----------------------------DPEVAVLLARVYLLMNEEVEAIRL 222 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc----------------------------CCcHHHHHHHHHHhcCcHHHHHHH
Confidence 3344555666678899999999988876 344666789999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 005603 568 TEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNA 641 (688)
Q Consensus 568 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~a 641 (688)
+++++...|.+...+...+..+...++++.|+...++++...|++...|..|+.+|...|+++ .|+-.++.+
T Consensus 223 l~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e--~ALlaLNs~ 294 (395)
T PF09295_consen 223 LNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFE--NALLALNSC 294 (395)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHH--HHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999998 888776644
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.59 E-value=1.1e-06 Score=72.86 Aligned_cols=97 Identities=23% Similarity=0.210 Sum_probs=87.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC---CHHHH
Q 005603 579 PGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDY---IPSIISTAEILMKLGRQSMPIARSFLMNALRLEPT---NHDAW 652 (688)
Q Consensus 579 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~---~~~~~ 652 (688)
+.+++.+|.++-..|+.++|+..|++++....+. ..+++.+|..+..+|+++ +|+..+++.+...|+ +..+.
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~d--eA~~~L~~~~~~~p~~~~~~~l~ 78 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYD--EALALLEEALEEFPDDELNAALR 78 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHCCCccccHHHH
Confidence 3578899999999999999999999999975543 568999999999999999 999999999999888 77888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHc
Q 005603 653 MNLGLISKMEGSLQQAADYFQAAYE 677 (688)
Q Consensus 653 ~~lg~~~~~~g~~~~A~~~~~~al~ 677 (688)
..++.++...|+.++|+..+-.++.
T Consensus 79 ~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 79 VFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999999887764
No 187
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=0.0012 Score=66.07 Aligned_cols=370 Identities=12% Similarity=0.055 Sum_probs=214.9
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHHHhcCCCCCCH---HHHHHHHHHH-HHcCCcHHHHHHHHHhHHHHHhHhhhcccch
Q 005603 293 IMDHLTYALSVTG--QFELLAEYVEQALPGIYNRA---ERWYILALCY-SAAGQNEAALNLLKKDQVSRGVIQSTTSQKE 366 (688)
Q Consensus 293 ~~~~l~~~~~~~g--~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~-~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 366 (688)
.+.-++..+..+| +...++++++.+....|.+. .....+|.++ .-..+++.|...++++. .....-|.
T Consensus 9 aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~------~i~~~ip~ 82 (629)
T KOG2300|consen 9 ALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAW------LISKSIPS 82 (629)
T ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH------HHHccccc
Confidence 3445667777778 78999999999998877643 4566677654 56789999999999997 22222222
Q ss_pred --hhHHHHHHHHHHHHHhhh-hhccchHHhhHHHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHH
Q 005603 367 --HFLAEAYKFLGICYGNVA-RKSISDTERVFFQKEALESLNCAFLNEREDP----EMMYYLGLEHAVQRNVEAAFDYAI 439 (688)
Q Consensus 367 --~~~~~~~~~lg~~~~~~~-~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~ 439 (688)
..+-.+...|+.+|.... .. ..+...+.+++++....+ ...+.++..+.-..++..|++.+.
T Consensus 83 fydvKf~a~SlLa~lh~~~~~s~-----------~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLa 151 (629)
T KOG2300|consen 83 FYDVKFQAASLLAHLHHQLAQSF-----------PPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLA 151 (629)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCC-----------chHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence 234577888999988877 55 778888899988776554 344667777777777777666532
Q ss_pred HHHh-----------------------hcCC--------------------CcH------HHHHHHHHH-HHHcCCHHHH
Q 005603 440 MYSD-----------------------TVAG--------------------NSG------RGWKLLALI-LSADQRLKDA 469 (688)
Q Consensus 440 ~~l~-----------------------~~p~--------------------~~~------~~~~~la~~-~~~~~~~~~A 469 (688)
--.+ ..++ ++. ..+..+-.+ |...|+...+
T Consensus 152 vga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~ 231 (629)
T KOG2300|consen 152 VGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTV 231 (629)
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhh
Confidence 1100 0011 000 001111111 1223333333
Q ss_pred HHHHHHHHh----hcCC-C---------CcH-----------HHHHHHHHH--HHHcCChHHHHHHHHHHHHHHHhhHHh
Q 005603 470 QSIVDFSLD----EAGS-M---------DQL-----------ELLRLKAVL--QIAQEQPKQAIGTYRILLAMIQAQREL 522 (688)
Q Consensus 470 ~~~~~~al~----~~p~-~---------~~~-----------~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~ 522 (688)
...+++.-+ ..++ + ..+ .++..+..+ -...|-+++|.++-++++......+..
T Consensus 232 k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~ 311 (629)
T KOG2300|consen 232 KPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQA 311 (629)
T ss_pred HHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccc
Confidence 333332211 0000 0 000 001111000 012344555555555554432211110
Q ss_pred h------hhc----c-----------c--cc-------cccc---cccccCCcchHHHHHHHHHHHHHcCChhHHHHHHH
Q 005603 523 H------SKN----F-----------H--KT-------KYIT---SEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTE 569 (688)
Q Consensus 523 ~------~~~----~-----------~--~~-------~~~~---~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 569 (688)
- ... . + .+ .... +..+-.+...+.+.+.+|.....-+.++.|...|.
T Consensus 312 d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~ 391 (629)
T KOG2300|consen 312 DLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFI 391 (629)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHH
Confidence 0 000 0 0 00 0111 11111223357888889998899999999999999
Q ss_pred HHHhcCCC-Ch--hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----------HHHHHHHHHHHHHhCCCChHHHHH
Q 005603 570 KAKSIEFY-SP--GSWHTTGMLFEAQSQYKEALVSFSISLAIEPDY----------IPSIISTAEILMKLGRQSMPIARS 636 (688)
Q Consensus 570 ~al~~~p~-~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~~~A~~ 636 (688)
.+.+.-.. +. ..-.++|.+|.+.|+-+.--+.++. +.|.+ ..+++..|...+..+++. +|..
T Consensus 392 ~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~ln--EaK~ 466 (629)
T KOG2300|consen 392 EATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLN--EAKR 466 (629)
T ss_pred HHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHH--HHHH
Confidence 99886542 22 2345789999998876554444433 34442 345677788888899988 9999
Q ss_pred HHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccCCCCC
Q 005603 637 FLMNALRLEPT------NHDAWMNLGLISKMEGSLQQAADYFQAAYELKLSAPV 684 (688)
Q Consensus 637 ~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 684 (688)
.+.+.++.... ..-.+..||.+....|+..++.....-++++....|+
T Consensus 467 ~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~D 520 (629)
T KOG2300|consen 467 FLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPD 520 (629)
T ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCC
Confidence 99999987521 1234556889999999999999998888877655544
No 188
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.54 E-value=2.4e-07 Score=69.43 Aligned_cols=65 Identities=25% Similarity=0.135 Sum_probs=41.2
Q ss_pred HHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005603 556 MKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTA 620 (688)
Q Consensus 556 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 620 (688)
+..|++++|+..|++++..+|++..++..+|.++...|++++|...+++++..+|+++..+..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 34566666666666666666666666666666666666666666666666666666655554444
No 189
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.54 E-value=1.7e-05 Score=68.53 Aligned_cols=148 Identities=18% Similarity=0.126 Sum_probs=103.0
Q ss_pred CHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcch
Q 005603 465 RLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLE 544 (688)
Q Consensus 465 ~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (688)
+.+....-..+.++..| ...-.+.+|..+...|++.+|...|++++.- .-..+
T Consensus 71 dP~R~~Rea~~~~~~Ap---Tvqnr~rLa~al~elGr~~EA~~hy~qalsG------------------------~fA~d 123 (251)
T COG4700 71 DPERHLREATEELAIAP---TVQNRYRLANALAELGRYHEAVPHYQQALSG------------------------IFAHD 123 (251)
T ss_pred ChhHHHHHHHHHHhhch---hHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc------------------------ccCCC
Confidence 33444444444455555 4455667777788888888888888777662 12236
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005603 545 IATWQDLATIYMKLGSLPDAEICTEKAKSIEFY--SPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEI 622 (688)
Q Consensus 545 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 622 (688)
+..+..+++..+..+++..|...+++..+.+|. .++....+|.++..+|++.+|...|+.++...|+ +.+....+..
T Consensus 124 ~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~ 202 (251)
T COG4700 124 AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEM 202 (251)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHH
Confidence 777778888888888888888888888877773 5667777888888888888888888888887775 4566667777
Q ss_pred HHHhCCCChHHHHHHHHHHH
Q 005603 623 LMKLGRQSMPIARSFLMNAL 642 (688)
Q Consensus 623 ~~~~g~~~~~~A~~~~~~al 642 (688)
+.++|+.+ +|..-+....
T Consensus 203 La~qgr~~--ea~aq~~~v~ 220 (251)
T COG4700 203 LAKQGRLR--EANAQYVAVV 220 (251)
T ss_pred HHHhcchh--HHHHHHHHHH
Confidence 88888776 6655544443
No 190
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.54 E-value=4.3e-07 Score=69.13 Aligned_cols=69 Identities=22% Similarity=0.290 Sum_probs=51.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005603 552 ATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTA 620 (688)
Q Consensus 552 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 620 (688)
..+|...++|++|+.++++++..+|+++..|..+|.++..+|++++|+..|+++++..|+++.+....+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 456777777777777777777777777777777777777777777777777777777777766554443
No 191
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.52 E-value=2.4e-05 Score=72.42 Aligned_cols=85 Identities=16% Similarity=0.094 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHhcCCCChhH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHH
Q 005603 562 PDAEICTEKAKSIEFYSPGS-----------------WHTTGMLFEAQSQYKEALVSFSISLAIEPDY---IPSIISTAE 621 (688)
Q Consensus 562 ~~A~~~~~~al~~~p~~~~~-----------------~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 621 (688)
.+|+..++..+...|++.-+ -..+|..|.+.|.+..|+.-++.+++..|+. .+++..+..
T Consensus 133 ~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~e 212 (254)
T COG4105 133 RAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEE 212 (254)
T ss_pred HHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 46778888888888876322 2356888999999999999999999987764 467888899
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhC-CCCH
Q 005603 622 ILMKLGRQSMPIARSFLMNALRLE-PTNH 649 (688)
Q Consensus 622 ~~~~~g~~~~~~A~~~~~~al~~~-p~~~ 649 (688)
+|..+|-.+ +|... .+++..+ |+++
T Consensus 213 aY~~lgl~~--~a~~~-~~vl~~N~p~s~ 238 (254)
T COG4105 213 AYYALGLTD--EAKKT-AKVLGANYPDSQ 238 (254)
T ss_pred HHHHhCChH--HHHHH-HHHHHhcCCCCc
Confidence 999999998 77764 6666655 4443
No 192
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.52 E-value=3.4e-08 Score=92.85 Aligned_cols=235 Identities=9% Similarity=-0.035 Sum_probs=167.3
Q ss_pred HHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHH
Q 005603 374 KFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGW 453 (688)
Q Consensus 374 ~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 453 (688)
-..|.-|..+|.+ ++|+.+|.+++..+|.++..+.+.+..|+++..|..|...+..++.++.... .+|
T Consensus 101 KE~GN~yFKQgKy-----------~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~-KAY 168 (536)
T KOG4648|consen 101 KERGNTYFKQGKY-----------EEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYV-KAY 168 (536)
T ss_pred HHhhhhhhhccch-----------hHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHH-HHH
Confidence 4567889999999 9999999999999999999999999999999999999999999999988776 999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhcccccccc
Q 005603 454 KLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYI 533 (688)
Q Consensus 454 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 533 (688)
...+..-..+|...+|.+-++.++.+.| .+.++...++.+-. +.++.- +.+..|...
T Consensus 169 SRR~~AR~~Lg~~~EAKkD~E~vL~LEP--~~~ELkK~~a~i~S----l~E~~I----~~KsT~G~~------------- 225 (536)
T KOG4648|consen 169 SRRMQARESLGNNMEAKKDCETVLALEP--KNIELKKSLARINS----LRERKI----ATKSTPGFT------------- 225 (536)
T ss_pred HHHHHHHHHHhhHHHHHHhHHHHHhhCc--ccHHHHHHHHHhcc----hHhhhH----HhhcCCCCC-------------
Confidence 9999999999999999999999999999 55555444443322 221110 001000000
Q ss_pred ccccccCCcchHHH--HHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005603 534 TSEAPSVKNLEIAT--WQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPD 611 (688)
Q Consensus 534 ~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 611 (688)
......... .-.-|..+...|.++.++.++..-+.....+.....+ +..+...-++++++....+++..+|.
T Consensus 226 -----~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s 299 (536)
T KOG4648|consen 226 -----PARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPT 299 (536)
T ss_pred -----ccccchhhhccccCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCC
Confidence 000000111 2234666777888888888887766655554444333 66677777888888888888877776
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHH
Q 005603 612 YIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDA 651 (688)
Q Consensus 612 ~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~ 651 (688)
........+.+-.-.|... ++...++.++.+.|.+...
T Consensus 300 ~~~~~s~~~~A~T~~~~~~--E~K~~~~T~~~~~P~~~~~ 337 (536)
T KOG4648|consen 300 PMPDTSGPPKAETIAKTSK--EVKPTKQTAVKVAPAVETP 337 (536)
T ss_pred cCcccCCCchhHHHHhhhh--hcCcchhheeeeccccccc
Confidence 6555555554444555555 7777778888777766443
No 193
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=1.6e-06 Score=75.72 Aligned_cols=114 Identities=13% Similarity=0.134 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCh-----hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 005603 545 IATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSP-----GSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIIST 619 (688)
Q Consensus 545 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 619 (688)
..-+-.-|.-++..|+|++|..-|..++.+.|..+ ..|.+.|.++..++.++.|+..+.++++++|.+..++...
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 44455668889999999999999999999998653 3577889999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005603 620 AEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISK 660 (688)
Q Consensus 620 a~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 660 (688)
+.+|.++..++ +|++.|.+.++.+|....+.-....+--
T Consensus 175 Aeayek~ek~e--ealeDyKki~E~dPs~~ear~~i~rl~~ 213 (271)
T KOG4234|consen 175 AEAYEKMEKYE--EALEDYKKILESDPSRREAREAIARLPP 213 (271)
T ss_pred HHHHHhhhhHH--HHHHHHHHHHHhCcchHHHHHHHHhcCH
Confidence 99999999998 9999999999999998777666555443
No 194
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.48 E-value=2.9e-07 Score=68.98 Aligned_cols=67 Identities=25% Similarity=0.299 Sum_probs=54.8
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005603 590 EAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLI 658 (688)
Q Consensus 590 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 658 (688)
...|++++|+..|++++..+|++..+++.+|.++.+.|+++ +|...+++++..+|+++..+..++.+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~--~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYD--EAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HH--HHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 46788888888888888888888888888888888888888 88888888888888887777666643
No 195
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.45 E-value=3.5e-06 Score=70.94 Aligned_cols=120 Identities=13% Similarity=0.065 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHH
Q 005603 545 IATWQDLATIYMKLGSLPDAEICTEKAKSIEFYS---PGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYI---PSIIS 618 (688)
Q Consensus 545 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~ 618 (688)
+..++.-|...+..|+|++|++.|+.+....|.. ..+...+|.+|...+++++|+..+++-++++|.++ .+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 5556666666666666666666666666666543 34566666666666666666666666666666553 34555
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccCCCCCC
Q 005603 619 TAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKLSAPVQ 685 (688)
Q Consensus 619 la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 685 (688)
.|.+++.+..-. +......+ ...+...+|...|++.+...|+++-+
T Consensus 90 ~gL~~~~~~~~~-------~~~~~~~d--------------rD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 90 RGLSYYEQDEGS-------LQSFFRSD--------------RDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHhhhH-------Hhhhcccc--------------cCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 555555544311 11111100 00112557888888888888877643
No 196
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.44 E-value=3.7e-06 Score=78.45 Aligned_cols=108 Identities=12% Similarity=0.051 Sum_probs=82.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHH
Q 005603 489 LRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICT 568 (688)
Q Consensus 489 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 568 (688)
.|..|.-++..|+|..|...|...++..|+ .+..+.+++.||.+++.+|++++|...|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~----------------------s~~~~nA~yWLGe~~y~qg~y~~Aa~~f 201 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPN----------------------STYTPNAYYWLGESLYAQGDYEDAAYIF 201 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------------------CcccchhHHHHHHHHHhcccchHHHHHH
Confidence 566677777778888888888888887776 4456777888888888888888888888
Q ss_pred HHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 005603 569 EKAKSIEFYS---PGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIIS 618 (688)
Q Consensus 569 ~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 618 (688)
..+.+-.|++ +++++.+|.+...+|+.++|...|+++++..|+...+...
T Consensus 202 ~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 202 ARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 8887776654 5667888888888888888888888888888877655443
No 197
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=0.0026 Score=63.69 Aligned_cols=421 Identities=15% Similarity=0.067 Sum_probs=243.1
Q ss_pred HHHHHHHhHHHHHHcC--CHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHhcCccCCCCCccccCCCccCCCchHH
Q 005603 193 FHKALELLPHLWIKAG--LLEEAIIAYRRALVKPWNLDPKKVASVQRDLAVTLLYGGVEARLPPELKVWGPIAPKDNVEE 270 (688)
Q Consensus 193 ~~~a~~~l~~~~~~~g--~~~eA~~~y~~al~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~ee 270 (688)
+..++-.+++.+...| +...+|.+.+..+...+ .....++-..+++.+|+.-. .|++-
T Consensus 6 va~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~i--s~~veart~LqLg~lL~~yT------------------~N~el 65 (629)
T KOG2300|consen 6 VAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQI--SFLVEARTHLQLGALLLRYT------------------KNVEL 65 (629)
T ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCC--hHHHHHHHHHHHHHHHHHHh------------------ccHHH
Confidence 4556666667777778 88899999988887742 22333333445555554321 23333
Q ss_pred HHHHHHHHHHHHHhhhcCCc----HHHHHHHHHHHHhcC-CHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHHcCCc
Q 005603 271 AILLLLILMEKVASKEMEWD----AEIMDHLTYALSVTG-QFELLAEYVEQALPGIYNRA----ERWYILALCYSAAGQN 341 (688)
Q Consensus 271 a~~~l~~~~~~~~l~~~p~~----~~~~~~l~~~~~~~g-~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~ 341 (688)
|-..+..+. ...+..|.- -.+...|+.++.... .+..+...+.++++.....+ ...+.++..+.-..++
T Consensus 66 AksHLekA~--~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~ 143 (629)
T KOG2300|consen 66 AKSHLEKAW--LISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDF 143 (629)
T ss_pred HHHHHHHHH--HHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccc
Confidence 333332110 011222321 234556666666665 56677777777776655544 3445667777777777
Q ss_pred HHHHHHHHHhH-------------------------------------HHHHhHhhhcccchh--hHHHHHHHHHHHHH-
Q 005603 342 EAALNLLKKDQ-------------------------------------VSRGVIQSTTSQKEH--FLAEAYKFLGICYG- 381 (688)
Q Consensus 342 ~~A~~~~~~~l-------------------------------------~~~~~~~~~~~~~~~--~~~~~~~~lg~~~~- 381 (688)
..|++.+.-.. .+....+....++.+ ..-..+..+-.+|.
T Consensus 144 ~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~ 223 (629)
T KOG2300|consen 144 PSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYL 223 (629)
T ss_pred hhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHh
Confidence 77776643221 011111211122211 11122223333322
Q ss_pred hhhhhccchHHhhHHHHHHHHHHH---HHHH-cCCC----C-------------------HHHHHHHHHH--HHHcCCHH
Q 005603 382 NVARKSISDTERVFFQKEALESLN---CAFL-NERE----D-------------------PEMMYYLGLE--HAVQRNVE 432 (688)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~A~~~~~---~al~-~~p~----~-------------------~~~~~~la~~--~~~~g~~~ 432 (688)
..|+. ..+...++ +.+. +.+. + ..++..+..+ -...|-++
T Consensus 224 ~~gq~-----------rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~ 292 (629)
T KOG2300|consen 224 LPGQV-----------RTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFK 292 (629)
T ss_pred cccch-----------hhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHH
Confidence 23333 33333333 3332 1221 0 0111111111 13467788
Q ss_pred HHHHHHHHHHhhcCC------Cc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---cCCC-----CcHHHHHH
Q 005603 433 AAFDYAIMYSDTVAG------NS-------GRGWKLLALILSADQRLKDAQSIVDFSLDE---AGSM-----DQLELLRL 491 (688)
Q Consensus 433 ~A~~~~~~~l~~~p~------~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~~-----~~~~~~~~ 491 (688)
+|.++-++++..... .. +..+-.++.+-.-.|++.+|++-...+.+. .|.+ ..+.+...
T Consensus 293 ~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~L 372 (629)
T KOG2300|consen 293 KAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHML 372 (629)
T ss_pred HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHH
Confidence 888888888754211 11 122334566667889999999988877653 3321 23556677
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 005603 492 KAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKA 571 (688)
Q Consensus 492 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 571 (688)
+|......+.++.|...|..+.+..... ...+.+-.++|.+|.+.|+-+.-.+.++
T Consensus 373 lGlys~sv~~~enAe~hf~~a~k~t~~~----------------------dl~a~~nlnlAi~YL~~~~~ed~y~~ld-- 428 (629)
T KOG2300|consen 373 LGLYSHSVNCYENAEFHFIEATKLTESI----------------------DLQAFCNLNLAISYLRIGDAEDLYKALD-- 428 (629)
T ss_pred HhhHhhhcchHHHHHHHHHHHHHhhhHH----------------------HHHHHHHHhHHHHHHHhccHHHHHHHHH--
Confidence 8888888899999999999998874431 1135556789999999887555444443
Q ss_pred HhcCCCC----------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhCCCChHHHH
Q 005603 572 KSIEFYS----------PGSWHTTGMLFEAQSQYKEALVSFSISLAIEPD------YIPSIISTAEILMKLGRQSMPIAR 635 (688)
Q Consensus 572 l~~~p~~----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~~~A~ 635 (688)
.+.|.+ ..+++..|...+.++++.||...+.+.++.... ..-.+..++.+....|+.. ++.
T Consensus 429 -~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~--es~ 505 (629)
T KOG2300|consen 429 -LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTV--ESR 505 (629)
T ss_pred -hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchH--HHH
Confidence 345542 245777888889999999999999999987521 2345677888899999998 999
Q ss_pred HHHHHHHHhC---CCCHHHH---HHHHHHHHHcCC--HHHHHHHHH
Q 005603 636 SFLMNALRLE---PTNHDAW---MNLGLISKMEGS--LQQAADYFQ 673 (688)
Q Consensus 636 ~~~~~al~~~---p~~~~~~---~~lg~~~~~~g~--~~~A~~~~~ 673 (688)
....-++++. |+.+..+ ..+-.+|...|+ .+...+.|.
T Consensus 506 nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~ 551 (629)
T KOG2300|consen 506 NMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFR 551 (629)
T ss_pred hccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 8888887754 5544332 235667788887 555555544
No 198
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.43 E-value=4.1e-06 Score=70.48 Aligned_cols=89 Identities=17% Similarity=0.142 Sum_probs=75.6
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhH
Q 005603 484 DQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPD 563 (688)
Q Consensus 484 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 563 (688)
.....++..|.-.+..|+|++|++.|+.+....|. .+....+.+.++.+|...+++++
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~----------------------g~ya~qAqL~l~yayy~~~~y~~ 65 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPF----------------------GEYAEQAQLDLAYAYYKQGDYEE 65 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC----------------------CcccHHHHHHHHHHHHHccCHHH
Confidence 45677888899999999999999999999888776 45567888999999999999999
Q ss_pred HHHHHHHHHhcCCCCh---hHHHHHHHHHHHcCC
Q 005603 564 AEICTEKAKSIEFYSP---GSWHTTGMLFEAQSQ 594 (688)
Q Consensus 564 A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~ 594 (688)
|+..+++.++++|.++ .+++..|.++..+..
T Consensus 66 A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 66 AIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhh
Confidence 9999999999999775 468888888877665
No 199
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.43 E-value=3.4e-06 Score=78.73 Aligned_cols=104 Identities=20% Similarity=0.168 Sum_probs=81.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHH
Q 005603 548 WQDLATIYMKLGSLPDAEICTEKAKSIEFYS---PGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDY---IPSIISTAE 621 (688)
Q Consensus 548 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 621 (688)
.++.|.-+...|+|.+|...|..-++..|++ +.+++.||.+++.+|+++.|...|..+++-.|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 6777777888888888888888888887765 5678888888888888888888888888776654 577888888
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhCCCCHHHHH
Q 005603 622 ILMKLGRQSMPIARSFLMNALRLEPTNHDAWM 653 (688)
Q Consensus 622 ~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~ 653 (688)
+..++|+.+ +|...|+++++..|+.+.+..
T Consensus 224 ~~~~l~~~d--~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 224 SLGRLGNTD--EACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHhcCHH--HHHHHHHHHHHHCCCCHHHHH
Confidence 888888887 888888888888887765543
No 200
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.42 E-value=1.1e-06 Score=76.27 Aligned_cols=88 Identities=23% Similarity=0.248 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCC--------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---
Q 005603 596 KEALVSFSISLAIEPDYIPSIISTAEILMKLGRQS--------MPIARSFLMNALRLEPTNHDAWMNLGLISKMEGS--- 664 (688)
Q Consensus 596 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--- 664 (688)
+.|.+.++.....+|.+++.+++.|.++..+.++. +++|+.-|+.++.++|+..++++.+|.+|...+.
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~ 87 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP 87 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC
Confidence 44444444444444544444444444444443332 3356666666666777777777777766655432
Q ss_pred --------HHHHHHHHHHHHcccCCCC
Q 005603 665 --------LQQAADYFQAAYELKLSAP 683 (688)
Q Consensus 665 --------~~~A~~~~~~al~l~p~~~ 683 (688)
+++|..+|++|.+.+|+++
T Consensus 88 d~~~A~~~F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 88 DTAEAEEYFEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 6777777788887887764
No 201
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.40 E-value=1.2e-06 Score=66.71 Aligned_cols=68 Identities=31% Similarity=0.373 Sum_probs=44.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 005603 586 GMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNL 655 (688)
Q Consensus 586 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~l 655 (688)
..+|...+++++|+.++++++..+|+++..+..+|.++...|++. +|+..|+++++..|+++.+....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~--~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYE--EALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHH--HHHHHHHHHHHHCCCcHHHHHHH
Confidence 345666666666666666666666666666666666666666666 66666666666666666554433
No 202
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=0.0002 Score=65.68 Aligned_cols=220 Identities=14% Similarity=0.041 Sum_probs=130.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC------------------cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005603 414 DPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGN------------------SGRGWKLLALILSADQRLKDAQSIVDF 475 (688)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------------------~~~~~~~la~~~~~~~~~~~A~~~~~~ 475 (688)
....|...-.++.+...+++|..-+...-+.+..+ |.......|.+....|+..+.+.-+..
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 34566666667777777777776665554443211 112233445566666666665544433
Q ss_pred HHhh------------cCCC-------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccc
Q 005603 476 SLDE------------AGSM-------DQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSE 536 (688)
Q Consensus 476 al~~------------~p~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 536 (688)
.... .|.. ....+.+.++.++.-.|.|.-.+..+.++++.+|.
T Consensus 148 L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e------------------ 209 (366)
T KOG2796|consen 148 LKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPE------------------ 209 (366)
T ss_pred HHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCc------------------
Confidence 3211 0000 11233455566666667777777777777765432
Q ss_pred cccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005603 537 APSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEF------YSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEP 610 (688)
Q Consensus 537 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 610 (688)
.++.....+|.+.++.|+.+.|..+++..-+... ....+..+.+.++.-.+++.+|...|.+++..+|
T Consensus 210 ------~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~ 283 (366)
T KOG2796|consen 210 ------QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDP 283 (366)
T ss_pred ------ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCC
Confidence 2566667777777777777777777774433221 2233455666667777777777777777777777
Q ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHH
Q 005603 611 DYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNH---DAWMNLGLIS 659 (688)
Q Consensus 611 ~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~ 659 (688)
.++.+..+.|.|+.-.|+.. +|++.++.+++..|... ...++|-.+|
T Consensus 284 ~~~~a~NnKALcllYlg~l~--DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 284 RNAVANNNKALCLLYLGKLK--DALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred CchhhhchHHHHHHHHHHHH--HHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 77777777777777777766 77777777777776532 3445555444
No 203
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.35 E-value=0.006 Score=64.07 Aligned_cols=60 Identities=18% Similarity=0.217 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHH-----HHHHHHHcC-CHHHHHHHHH
Q 005603 611 DYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMN-----LGLISKMEG-SLQQAADYFQ 673 (688)
Q Consensus 611 ~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~-----lg~~~~~~g-~~~~A~~~~~ 673 (688)
..+.++..++..+...|+++ +|-+.|-.+++++.-+.. |.. .-.-..+.| ++++|..+|-
T Consensus 993 k~~~vhlk~a~~ledegk~e--daskhyveaiklntynit-wcqavpsrfd~e~ir~gnkpe~av~mfi 1058 (1636)
T KOG3616|consen 993 KMGEVHLKLAMFLEDEGKFE--DASKHYVEAIKLNTYNIT-WCQAVPSRFDAEFIRAGNKPEEAVEMFI 1058 (1636)
T ss_pred cCccchhHHhhhhhhccchh--hhhHhhHHHhhcccccch-hhhcccchhhHHHHHcCCChHHHHHHhh
Confidence 45677888999999999999 999999999998754431 211 111123344 5666766653
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=0.00033 Score=64.34 Aligned_cols=184 Identities=10% Similarity=-0.001 Sum_probs=144.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh------------hcCCCcHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 005603 420 YLGLEHAVQRNVEAAFDYAIMYSD------------TVAGNSGR--------GWKLLALILSADQRLKDAQSIVDFSLDE 479 (688)
Q Consensus 420 ~la~~~~~~g~~~~A~~~~~~~l~------------~~p~~~~~--------~~~~la~~~~~~~~~~~A~~~~~~al~~ 479 (688)
..|.+....|+..+.+.-+..... ..|.+.+. +.+.+..++.-.|.|.-....+.+.++.
T Consensus 127 lhAe~~~~lgnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~ 206 (366)
T KOG2796|consen 127 LHAELQQYLGNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKY 206 (366)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHh
Confidence 345566677777777655443322 12343333 3456778888999999999999999998
Q ss_pred cCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcC
Q 005603 480 AGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLG 559 (688)
Q Consensus 480 ~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 559 (688)
+|. ..+.+...++.+..+.|+.+.|..+|++.-+.... +........+..+.+.+|.-.+
T Consensus 207 ~~e-~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~k-------------------L~~~q~~~~V~~n~a~i~lg~n 266 (366)
T KOG2796|consen 207 YPE-QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQK-------------------LDGLQGKIMVLMNSAFLHLGQN 266 (366)
T ss_pred CCc-ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh-------------------hhccchhHHHHhhhhhheeccc
Confidence 863 78889999999999999999999999977654322 2333346777888999999999
Q ss_pred ChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHH
Q 005603 560 SLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYI---PSIISTAEIL 623 (688)
Q Consensus 560 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~ 623 (688)
++.+|...+.+++..+|.++.+-++.|.|..-.|+..+|++..+.++...|... ...+++..+|
T Consensus 267 n~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 267 NFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred chHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999753 3445555444
No 205
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.32 E-value=1e-05 Score=70.68 Aligned_cols=113 Identities=11% Similarity=-0.046 Sum_probs=92.7
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHH
Q 005603 328 WYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCA 407 (688)
Q Consensus 328 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 407 (688)
+-.-|.-++..|+|++|..-|..++ ...+..+...+...+...|.++.+++.. +.|+....++
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Al------e~cp~~~~e~rsIly~Nraaa~iKl~k~-----------e~aI~dcsKa 160 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEAL------ESCPSTSTEERSILYSNRAAALIKLRKW-----------ESAIEDCSKA 160 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHH------HhCccccHHHHHHHHhhhHHHHHHhhhH-----------HHHHHHHHhh
Confidence 3445777788888888888888887 5556666666678888889999999998 9999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHH
Q 005603 408 FLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLAL 458 (688)
Q Consensus 408 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~ 458 (688)
+.++|.+..++...|.+|.+...|++|+..|+++++.+|... .+....++
T Consensus 161 iel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~-ear~~i~r 210 (271)
T KOG4234|consen 161 IELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRR-EAREAIAR 210 (271)
T ss_pred HhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH-HHHHHHHh
Confidence 999999999999999999999999999999999999999876 55444443
No 206
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.31 E-value=2.1e-06 Score=86.07 Aligned_cols=70 Identities=19% Similarity=0.152 Sum_probs=64.0
Q ss_pred cCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Q 005603 574 IEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPS---IISTAEILMKLGRQSMPIARSFLMNALRLE 645 (688)
Q Consensus 574 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~~~A~~~~~~al~~~ 645 (688)
.+|+++.+|+++|.+|..+|++++|+..|+++++++|++..+ |+++|.+|..+|+.+ +|+..+++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~d--EAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGK--KAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhc
Confidence 468889999999999999999999999999999999999854 999999999999998 9999999999973
No 207
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.23 E-value=2.2e-06 Score=66.13 Aligned_cols=66 Identities=27% Similarity=0.341 Sum_probs=52.5
Q ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC---C----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005603 543 LEIATWQDLATIYMKLGSLPDAEICTEKAKSIE---F----YSPGSWHTTGMLFEAQSQYKEALVSFSISLAI 608 (688)
Q Consensus 543 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 608 (688)
....++.++|.+|...|++++|+.+|++++.+. + ....++.++|.++..+|++++|+.++++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 357788899999999999999999999988652 1 22456888888999999999999998888765
No 208
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.23 E-value=1.1e-05 Score=70.11 Aligned_cols=98 Identities=16% Similarity=0.175 Sum_probs=76.4
Q ss_pred hhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCC
Q 005603 561 LPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQ----------YKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQS 630 (688)
Q Consensus 561 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 630 (688)
|+.|.+.++.....+|.+++.+++.|.++..+.+ +++|+.-|++++.++|+...++..+|.++...+...
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 6788999999999999999999999988876543 567888899999999999999999999998887643
Q ss_pred ---------hHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005603 631 ---------MPIARSFLMNALRLEPTNHDAWMNLGLI 658 (688)
Q Consensus 631 ---------~~~A~~~~~~al~~~p~~~~~~~~lg~~ 658 (688)
+++|..+|+++...+|++...+..|..+
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 5688999999999999997666555443
No 209
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.22 E-value=5.4e-06 Score=83.20 Aligned_cols=71 Identities=13% Similarity=0.029 Sum_probs=67.0
Q ss_pred ccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhH---HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005603 538 PSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGS---WHTTGMLFEAQSQYKEALVSFSISLAI 608 (688)
Q Consensus 538 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~~~~al~~ 608 (688)
....|.++..|+++|.+|...|++++|+.+|+++++++|++..+ |+++|.+|..+|++++|+.++++++++
T Consensus 68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34678899999999999999999999999999999999999854 999999999999999999999999997
No 210
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.21 E-value=3.1e-06 Score=65.32 Aligned_cols=72 Identities=29% Similarity=0.277 Sum_probs=59.7
Q ss_pred HHHHHHHhhhhHHhhCChHHHHHHHHHHHHHHHhcCCCCCCCCCCccccHHHHHHHHHHHhHHHHHHcCCHHHHHHHHHH
Q 005603 140 LLEAILLKAKSLEELGHCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKALELLPHLWIKAGLLEEAIIAYRR 219 (688)
Q Consensus 140 ~~e~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~ 219 (688)
++.+++..|.++..+|+|++|+..|++++++ .+..+.. .+-+..++..+|.++...|++++|+..|++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~-----------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDD-----------HPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTH-----------HHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCC-----------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4678899999999999999999999999998 4433221 123678899999999999999999999999
Q ss_pred hhCC
Q 005603 220 ALVK 223 (688)
Q Consensus 220 al~~ 223 (688)
++.+
T Consensus 72 al~i 75 (78)
T PF13424_consen 72 ALDI 75 (78)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 9865
No 211
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.20 E-value=2.5e-05 Score=63.22 Aligned_cols=103 Identities=17% Similarity=0.127 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHH
Q 005603 545 IATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDY----IPSIISTA 620 (688)
Q Consensus 545 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la 620 (688)
...+-.-|......|+.+.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|+..+++++++..+. -.++...|
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 33455667777888899999999999999999889999999999988999999999999988875543 34677888
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCCCH
Q 005603 621 EILMKLGRQSMPIARSFLMNALRLEPTNH 649 (688)
Q Consensus 621 ~~~~~~g~~~~~~A~~~~~~al~~~p~~~ 649 (688)
.+|...|+.+ .|...|+.+-++.....
T Consensus 123 ~lyRl~g~dd--~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 123 LLYRLLGNDD--AARADFEAAAQLGSKFA 149 (175)
T ss_pred HHHHHhCchH--HHHHhHHHHHHhCCHHH
Confidence 8888888888 88888888888765443
No 212
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.18 E-value=5.5e-05 Score=61.34 Aligned_cols=97 Identities=23% Similarity=0.269 Sum_probs=87.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC----HHHHHHHHH
Q 005603 582 WHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTN----HDAWMNLGL 657 (688)
Q Consensus 582 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~ 657 (688)
+-..|......|+.+.|++.|.+++.+.|..+.+|.+.+..+.-.|+.+ +|+..+++++++..+. -.++...|.
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e--~ALdDLn~AleLag~~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDE--EALDDLNKALELAGDQTRTACQAFVQRGL 123 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChH--HHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 4456788889999999999999999999999999999999999999998 9999999999986443 256888999
Q ss_pred HHHHcCCHHHHHHHHHHHHcccC
Q 005603 658 ISKMEGSLQQAADYFQAAYELKL 680 (688)
Q Consensus 658 ~~~~~g~~~~A~~~~~~al~l~p 680 (688)
+|...|+.+.|...|+.|.++-.
T Consensus 124 lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHhCchHHHHHhHHHHHHhCC
Confidence 99999999999999999987644
No 213
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.13 E-value=0.012 Score=58.75 Aligned_cols=100 Identities=18% Similarity=0.074 Sum_probs=53.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHH------HHHHHH-HcCCH---HHHHHHHHHHHhhcCCC-CcHHHH
Q 005603 421 LGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKL------LALILS-ADQRL---KDAQSIVDFSLDEAGSM-DQLELL 489 (688)
Q Consensus 421 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~------la~~~~-~~~~~---~~A~~~~~~al~~~p~~-~~~~~~ 489 (688)
+-....++++...|..++.-....+|+.. ..... +-.+.. ....+ .+=+..++.+-..+-+. .-..-+
T Consensus 304 ~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~s-vs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L 382 (549)
T PF07079_consen 304 LLSFKVKQVQTEEAKQYLALLKILDPRIS-VSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYL 382 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhcCCcch-hhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHH
Confidence 33445677888888888887777888764 21111 111111 11111 11222233222222200 112334
Q ss_pred HHHHHHHHHcCC-hHHHHHHHHHHHHHHHhhHH
Q 005603 490 RLKAVLQIAQEQ-PKQAIGTYRILLAMIQAQRE 521 (688)
Q Consensus 490 ~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~ 521 (688)
..-|.-+...|+ -++|+..++.+++..+.+..
T Consensus 383 ~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~e 415 (549)
T PF07079_consen 383 VFGAKHLWEIGQCDEKALNLLKLILQFTNYDIE 415 (549)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhccccHH
Confidence 455677778887 78889999888887666543
No 214
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.09 E-value=0.015 Score=57.98 Aligned_cols=391 Identities=13% Similarity=0.005 Sum_probs=222.5
Q ss_pred HHHhhhcCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhH--------
Q 005603 281 KVASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQ-------- 352 (688)
Q Consensus 281 ~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l-------- 352 (688)
..-++.+|.|...|+.|..-+..+|.+++..+.+++...-.|--+.+|...-..-....+|.....+|.+++
T Consensus 32 RerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldL 111 (660)
T COG5107 32 RERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDL 111 (660)
T ss_pred HHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhH
Confidence 344678899999999999999999999999999999999999888999887777777888988888898887
Q ss_pred ------HHHHhHhhhcccchhhHHHHH-HHHH----------------HHHHhhhhhccchHHhhHHHHHHHHHHHHHHH
Q 005603 353 ------VSRGVIQSTTSQKEHFLAEAY-KFLG----------------ICYGNVARKSISDTERVFFQKEALESLNCAFL 409 (688)
Q Consensus 353 ------~~~~~~~~~~~~~~~~~~~~~-~~lg----------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 409 (688)
|.++.-....+........++ +.++ ..+. .+..-. .-+.....+.-...|.+++.
T Consensus 112 W~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle-~~~~~~-kwEeQqrid~iR~~Y~ral~ 189 (660)
T COG5107 112 WMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLE-YIEELG-KWEEQQRIDKIRNGYMRALQ 189 (660)
T ss_pred HHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHH-hccccc-cHHHHHHHHHHHHHHHHHHc
Confidence 223222211111111111111 1111 1111 000000 11234455667777777775
Q ss_pred cCCCCHH-HHHHH---------HHHHHHcC----CHHHHHHHHHHHHhh-------------------------------
Q 005603 410 NEREDPE-MMYYL---------GLEHAVQR----NVEAAFDYAIMYSDT------------------------------- 444 (688)
Q Consensus 410 ~~p~~~~-~~~~l---------a~~~~~~g----~~~~A~~~~~~~l~~------------------------------- 444 (688)
.--++.+ .|... +..---.| -|-.|...+++...+
T Consensus 190 tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIk 269 (660)
T COG5107 190 TPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIK 269 (660)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhh
Confidence 4333321 11110 00000011 123344444443322
Q ss_pred ----------------------------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 005603 445 ----------------------------VAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQ 496 (688)
Q Consensus 445 ----------------------------~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~ 496 (688)
.|-.+ +.|+.....+...++-+.|+....+++...| . +...++.++
T Consensus 270 wE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~-evw~dys~Y~~~isd~q~al~tv~rg~~~sp--s---L~~~lse~y 343 (660)
T COG5107 270 WEMENGLKLGGRPHEQRIHYIHNQILDYFYYAE-EVWFDYSEYLIGISDKQKALKTVERGIEMSP--S---LTMFLSEYY 343 (660)
T ss_pred HhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHhhccHHHHHHHHHHhcccCCC--c---hheeHHHHH
Confidence 22222 4444444445556666666666666666555 1 445566666
Q ss_pred HHcCChHHHHHHHHHHHHHHHhhHHhhhhcccccc----ccccc-cccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 005603 497 IAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTK----YITSE-APSVKNLEIATWQDLATIYMKLGSLPDAEICTEKA 571 (688)
Q Consensus 497 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 571 (688)
...++.+....+|+++.+..........+....+. ....+ .........-+|..+-+.-.+..-.+.|...|-++
T Consensus 344 el~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~ 423 (660)
T COG5107 344 ELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKL 423 (660)
T ss_pred hhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 66666666666666655533222111111000000 00000 00001112334444555555556678888888888
Q ss_pred HhcCCCChhHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC--
Q 005603 572 KSIEFYSPGSWHTTGM-LFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTN-- 648 (688)
Q Consensus 572 l~~~p~~~~~~~~lg~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~-- 648 (688)
-+..-....++..-|. -+...|++.-|-..|+-.+...|+.+......-..+...++-+ .|...|++++..-...
T Consensus 424 rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~--naraLFetsv~r~~~~q~ 501 (660)
T COG5107 424 RKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEE--NARALFETSVERLEKTQL 501 (660)
T ss_pred hccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHH--HHHHHHHHhHHHHHHhhh
Confidence 7655334444443333 3566899999999999999999998877777777888889888 9999999887643222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcccCC
Q 005603 649 HDAWMNLGLISKMEGSLQQAADYFQAAYELKLS 681 (688)
Q Consensus 649 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 681 (688)
..+|..+-..-..-|+...+...=++..++.|.
T Consensus 502 k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 502 KRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred hHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 355655555556667776666665655555553
No 215
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.08 E-value=0.00012 Score=74.41 Aligned_cols=97 Identities=19% Similarity=0.281 Sum_probs=86.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 005603 587 MLFEAQSQYKEALVSFSISLAIEPDYI-PSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSL 665 (688)
Q Consensus 587 ~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 665 (688)
..+...|+...|+.++..++...|... ....+++.++.+.|-.. +|-.++.+++.+....|-.++.+|.++..+.+.
T Consensus 615 lywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~--da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i 692 (886)
T KOG4507|consen 615 LYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHL--DATKLLLQALAINSSEPLTFLSLGNAYLALKNI 692 (886)
T ss_pred ceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhc--cHHHHHHHHHhhcccCchHHHhcchhHHHHhhh
Confidence 334457899999999999999888643 46789999999999777 999999999999988899999999999999999
Q ss_pred HHHHHHHHHHHcccCCCCCC
Q 005603 666 QQAADYFQAAYELKLSAPVQ 685 (688)
Q Consensus 666 ~~A~~~~~~al~l~p~~~~~ 685 (688)
+.|++.|++|+++.|++|+.
T Consensus 693 ~~a~~~~~~a~~~~~~~~~~ 712 (886)
T KOG4507|consen 693 SGALEAFRQALKLTTKCPEC 712 (886)
T ss_pred HHHHHHHHHHHhcCCCChhh
Confidence 99999999999999999864
No 216
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.0029 Score=57.33 Aligned_cols=184 Identities=13% Similarity=0.055 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----cC-CCcHHHHHHHHHHHHHcCCHHHHHHH
Q 005603 398 KEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDT----VA-GNSGRGWKLLALILSADQRLKDAQSI 472 (688)
Q Consensus 398 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p-~~~~~~~~~la~~~~~~~~~~~A~~~ 472 (688)
++|.++|.++- ..|....+|+.|-..|.++-+. +. .+....+...+.+| +..+..+|..+
T Consensus 31 eeAadl~~~Aa--------------n~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~c 95 (288)
T KOG1586|consen 31 EEAAELYERAA--------------NMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNC 95 (288)
T ss_pred HHHHHHHHHHH--------------HHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHH
Confidence 88888888774 2333344444444444444322 11 11112333333343 34477788888
Q ss_pred HHHHHhhcCCCC----cHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHH
Q 005603 473 VDFSLDEAGSMD----QLELLRLKAVLQIAQ-EQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIAT 547 (688)
Q Consensus 473 ~~~al~~~p~~~----~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (688)
+++++++..+.. -...+..+|.+|... .++++|+..|+++-+........ ...-..
T Consensus 96 L~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~-------------------ssANKC 156 (288)
T KOG1586|consen 96 LEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV-------------------SSANKC 156 (288)
T ss_pred HHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh-------------------hhHHHH
Confidence 888877765211 112244778888765 88999999999998876543111 113456
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCChh-------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 005603 548 WQDLATIYMKLGSLPDAEICTEKAKSIEFYSPG-------SWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPS 615 (688)
Q Consensus 548 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 615 (688)
+...+..-...++|.+|+..|++.....-++.. .++.-|.|+.-..+.-.+...+++-.+++|....+
T Consensus 157 ~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 157 LLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 677778888899999999999998876655543 35566778888788888888888888899986543
No 217
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.00049 Score=62.12 Aligned_cols=137 Identities=17% Similarity=0.141 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhH------HHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCC-----
Q 005603 545 IATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGS------WHTTGMLFEAQ-SQYKEALVSFSISLAIEPDY----- 612 (688)
Q Consensus 545 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~----- 612 (688)
...+...+.+|.+ +++.+|..++++++++..+.... +..+|.+|... .++++|+.+|+++-+.....
T Consensus 74 at~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ss 152 (288)
T KOG1586|consen 74 ATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSS 152 (288)
T ss_pred HHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhh
Confidence 3344444444444 47777777777777776544332 34677777765 78888888888887654321
Q ss_pred -HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHcccCCCCC
Q 005603 613 -IPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHD-------AWMNLGLISKMEGSLQQAADYFQAAYELKLSAPV 684 (688)
Q Consensus 613 -~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~-------~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 684 (688)
-.++...+..-..++++. +|+..|+++....-+++. -++.-|.+++...+.-.+...+++-.+++|....
T Consensus 153 ANKC~lKvA~yaa~leqY~--~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 153 ANKCLLKVAQYAAQLEQYS--KAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 235566667777788887 888888888776555542 2445677777778888888888888888887543
No 218
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=1.4e-05 Score=72.07 Aligned_cols=127 Identities=13% Similarity=0.064 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005603 545 IATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILM 624 (688)
Q Consensus 545 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 624 (688)
..-+..-|..++...+|..|+.+|.+++.++|..+..|.+.+.++.+..+++.......+++++.|+.+..++.+|....
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l 89 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL 89 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence 33445567778888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCChHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005603 625 KLGRQSMPIARSFLMNALRLE-----PTNHDAWMNLGLISKMEGSLQQAADYFQ 673 (688)
Q Consensus 625 ~~g~~~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 673 (688)
....++ +|+..+.++..+. |.-.+++..|-.+-...=...++.+..+
T Consensus 90 ~s~~~~--eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 90 QSKGYD--EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred hhcccc--HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 999998 9999999996652 2224667666666555444555544433
No 219
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.02 E-value=0.00013 Score=72.62 Aligned_cols=166 Identities=13% Similarity=0.007 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhc------CCCCcHHHH
Q 005603 417 MMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSL-DEA------GSMDQLELL 489 (688)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al-~~~------p~~~~~~~~ 489 (688)
+.......+.+..+...+..-.+.++....+++ .+....+..++..|++.+|.+.+...- ... |.......|
T Consensus 208 ~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~-~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~ 286 (696)
T KOG2471|consen 208 LQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSS-MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFN 286 (696)
T ss_pred hhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCc-HHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheee
Confidence 344455566778888888888888888888888 999999999999999999999886542 222 211244567
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH-HHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHH
Q 005603 490 RLKAVLQIAQEQPKQAIGTYRILLA-MIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICT 568 (688)
Q Consensus 490 ~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 568 (688)
.++|-++++.|.+.-+..+|.++++ .+..-...+.. ...... ......++.++.|..|...|++-.|.+||
T Consensus 287 NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~------~~~~tl--s~nks~eilYNcG~~~Lh~grPl~AfqCf 358 (696)
T KOG2471|consen 287 NNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKP------AKTFTL--SQNKSMEILYNCGLLYLHSGRPLLAFQCF 358 (696)
T ss_pred cCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCC------Ccceeh--hcccchhhHHhhhHHHHhcCCcHHHHHHH
Confidence 8999999999999999999999997 22221110000 000000 11235788999999999999999999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHH
Q 005603 569 EKAKSIEFYSPGSWHTTGMLFEA 591 (688)
Q Consensus 569 ~~al~~~p~~~~~~~~lg~~~~~ 591 (688)
.++....-.+|..|..++.++..
T Consensus 359 ~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 359 QKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHH
Confidence 99999999999999999998753
No 220
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=6e-05 Score=68.11 Aligned_cols=96 Identities=22% Similarity=0.208 Sum_probs=78.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005603 585 TGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGS 664 (688)
Q Consensus 585 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 664 (688)
-|..+....+|+.|+.+|.+++.++|..+..+.+.+.++++..+++ .+.....+++++.|+...+++.+|........
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~--~v~~dcrralql~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWE--PVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhh--hhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence 4556666778888888888888888888888888888888888888 88888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHcccCCC
Q 005603 665 LQQAADYFQAAYELKLSA 682 (688)
Q Consensus 665 ~~~A~~~~~~al~l~p~~ 682 (688)
+++|+..+++|..+....
T Consensus 94 ~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred ccHHHHHHHHHHHHHhcC
Confidence 888888888886654433
No 221
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.012 Score=64.17 Aligned_cols=274 Identities=15% Similarity=0.114 Sum_probs=143.5
Q ss_pred HHHHHHHcCCcHHHHHHHHHhH--------------HHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHH
Q 005603 331 LALCYSAAGQNEAALNLLKKDQ--------------VSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFF 396 (688)
Q Consensus 331 la~~~~~~g~~~~A~~~~~~~l--------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~ 396 (688)
.|.+....+-|++|..+|++.- -..++.+... ..+. +.+|..+|.+....+..
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe-~~n~--p~vWsqlakAQL~~~~v---------- 1120 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAE-RCNE--PAVWSQLAKAQLQGGLV---------- 1120 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHH-hhCC--hHHHHHHHHHHHhcCch----------
Confidence 3555666667777777776642 1111111111 1111 45666666666666666
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005603 397 QKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFS 476 (688)
Q Consensus 397 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 476 (688)
.+|++.|-++ +++..+........+.|.|++-++++.-+-+..... ..-..+...|.+.++..+-++++.
T Consensus 1121 -~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~--~id~eLi~AyAkt~rl~elE~fi~-- 1190 (1666)
T KOG0985|consen 1121 -KDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP--YIDSELIFAYAKTNRLTELEEFIA-- 1190 (1666)
T ss_pred -HHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc--cchHHHHHHHHHhchHHHHHHHhc--
Confidence 6676666554 455666666666666677776666666554433222 222233333444444443332221
Q ss_pred HhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHH
Q 005603 477 LDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYM 556 (688)
Q Consensus 477 l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 556 (688)
.| +..-....|.-++..|.|+.|.-.|. +..-|..++..+.
T Consensus 1191 ---gp---N~A~i~~vGdrcf~~~~y~aAkl~y~---------------------------------~vSN~a~La~TLV 1231 (1666)
T KOG0985|consen 1191 ---GP---NVANIQQVGDRCFEEKMYEAAKLLYS---------------------------------NVSNFAKLASTLV 1231 (1666)
T ss_pred ---CC---CchhHHHHhHHHhhhhhhHHHHHHHH---------------------------------HhhhHHHHHHHHH
Confidence 11 11112233333444444444433332 2334455555666
Q ss_pred HcCChhHHHHHHHHHHhcCC-------------------------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005603 557 KLGSLPDAEICTEKAKSIEF-------------------------YSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPD 611 (688)
Q Consensus 557 ~~g~~~~A~~~~~~al~~~p-------------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 611 (688)
.+|+|..|...-+++-.... -.++-+-.+...|...|-+++-+..++.++.+..-
T Consensus 1232 ~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERA 1311 (1666)
T KOG0985|consen 1232 YLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERA 1311 (1666)
T ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHH
Confidence 66666666655555432210 01223455667788889999999999998888887
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh-C-C------CCHHHHHHHHHHHHHcCCHHHHH
Q 005603 612 YIPSIISTAEILMKLGRQSMPIARSFLMNALRL-E-P------TNHDAWMNLGLISKMEGSLQQAA 669 (688)
Q Consensus 612 ~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~-~-p------~~~~~~~~lg~~~~~~g~~~~A~ 669 (688)
+...+..+|.+|.+-.- + +-.+.++-.... + | +....|..+..+|.+-..|+.|.
T Consensus 1312 HMgmfTELaiLYskykp-~--km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1312 HMGMFTELAILYSKYKP-E--KMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHHHHHHHHHHHhcCH-H--HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 77778888887765432 2 444443332221 0 1 12345666666666655555553
No 222
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.99 E-value=0.0047 Score=61.81 Aligned_cols=186 Identities=11% Similarity=0.010 Sum_probs=123.1
Q ss_pred chhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHH---cCCHHHHHHH
Q 005603 365 KEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLN----EREDPEMMYYLGLEHAV---QRNVEAAFDY 437 (688)
Q Consensus 365 ~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~ 437 (688)
+..+.+.....+-.+|....++ +.-+...+..-.+ -+..+.+.+.+|.++.+ .|+.++|++.
T Consensus 136 ~~~ls~div~~lllSyRdiqdy-----------damI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~i 204 (374)
T PF13281_consen 136 PELLSPDIVINLLLSYRDIQDY-----------DAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQI 204 (374)
T ss_pred HhhcChhHHHHHHHHhhhhhhH-----------HHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHH
Confidence 3344456667777788888888 8888888877665 44567788899999999 9999999999
Q ss_pred HHHHH-hhcCCCcHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHH
Q 005603 438 AIMYS-DTVAGNSGRGWKLLALILSA---------DQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIG 507 (688)
Q Consensus 438 ~~~~l-~~~p~~~~~~~~~la~~~~~---------~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~ 507 (688)
+..++ ...+.++ +.+..+|.+|-. ....++|+..|.++.+..| +...-.+++.++...|...+...
T Consensus 205 l~~~l~~~~~~~~-d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~---~~Y~GIN~AtLL~~~g~~~~~~~ 280 (374)
T PF13281_consen 205 LLPVLESDENPDP-DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP---DYYSGINAATLLMLAGHDFETSE 280 (374)
T ss_pred HHHHHhccCCCCh-HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc---cccchHHHHHHHHHcCCcccchH
Confidence 99955 4455666 999999998732 2347899999999999887 34445567777777776555444
Q ss_pred HHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 005603 508 TYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYS 578 (688)
Q Consensus 508 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 578 (688)
..++........ . ..+.......+......++.+..-.|++++|...+++++...|..
T Consensus 281 el~~i~~~l~~l---l----------g~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 281 ELRKIGVKLSSL---L----------GRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred HHHHHHHHHHHH---H----------HhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 443333111100 0 001111122234445556666666777777777777777765543
No 223
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.94 E-value=1.8e-05 Score=52.89 Aligned_cols=40 Identities=28% Similarity=0.541 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHH
Q 005603 547 TWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTG 586 (688)
Q Consensus 547 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 586 (688)
+|..+|.+|...|++++|+..|+++++.+|+++.+|..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4555555555555555555555555555555555555554
No 224
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.93 E-value=0.00012 Score=71.90 Aligned_cols=135 Identities=16% Similarity=0.143 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005603 547 TWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEA-QSQYKEALVSFSISLAIEPDYIPSIISTAEILMK 625 (688)
Q Consensus 547 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 625 (688)
+|..+.....+.+..+.|...|.++.+..+....+|...|.+... .++.+.|...|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 577777888888889999999999997777788999999999777 5566669999999999999999999999999999
Q ss_pred hCCCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHcccCCCC
Q 005603 626 LGRQSMPIARSFLMNALRLEPTNH---DAWMNLGLISKMEGSLQQAADYFQAAYELKLSAP 683 (688)
Q Consensus 626 ~g~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 683 (688)
.|+.+ .|+.+|++++..-|... .+|......-...|+.+......+++.+..|+++
T Consensus 83 ~~d~~--~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 83 LNDIN--NARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp TT-HH--HHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred hCcHH--HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 99988 99999999999876654 6888899999999999999999999999888743
No 225
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=0.00097 Score=63.47 Aligned_cols=164 Identities=13% Similarity=-0.001 Sum_probs=105.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhcccccccc
Q 005603 454 KLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYI 533 (688)
Q Consensus 454 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 533 (688)
..-+.++...|++.+|-...++.++..| .+..++..--.+++..|+...-...+++++..+.
T Consensus 107 h~~aai~~~~g~~h~a~~~wdklL~d~P--tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn---------------- 168 (491)
T KOG2610|consen 107 HAKAAILWGRGKHHEAAIEWDKLLDDYP--TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWN---------------- 168 (491)
T ss_pred hhhHHHhhccccccHHHHHHHHHHHhCc--hhhhhhhhhhhHHHhccchhhhhhHHHHhccccC----------------
Confidence 3345556667777777777777777777 5666666666677777777777777766665421
Q ss_pred ccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-C
Q 005603 534 TSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPD-Y 612 (688)
Q Consensus 534 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~ 612 (688)
.+.|....+.-.++..+...|-|++|++.-+++++++|.+..+.+.++.++...|++.++.++..+.-..-.. .
T Consensus 169 -----~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~ 243 (491)
T KOG2610|consen 169 -----ADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSW 243 (491)
T ss_pred -----CCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhh
Confidence 1244455666667777777777888888878888887777777777777777777777777776654221110 0
Q ss_pred ---HHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 005603 613 ---IPSIISTAEILMKLGRQSMPIARSFLMNAL 642 (688)
Q Consensus 613 ---~~~~~~la~~~~~~g~~~~~~A~~~~~~al 642 (688)
..-|...+..+...+.++ .|++.|.+-+
T Consensus 244 mlasHNyWH~Al~~iE~aeye--~aleIyD~ei 274 (491)
T KOG2610|consen 244 MLASHNYWHTALFHIEGAEYE--KALEIYDREI 274 (491)
T ss_pred HHHhhhhHHHHHhhhcccchh--HHHHHHHHHH
Confidence 112333455555666666 7777776644
No 226
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.92 E-value=1.2e-05 Score=49.93 Aligned_cols=32 Identities=28% Similarity=0.456 Sum_probs=27.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005603 638 LMNALRLEPTNHDAWMNLGLISKMEGSLQQAA 669 (688)
Q Consensus 638 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 669 (688)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67888888999999999999998888888886
No 227
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.91 E-value=0.014 Score=60.05 Aligned_cols=140 Identities=18% Similarity=0.124 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC--CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhH-Hhhhh-c
Q 005603 451 RGWKLLALILSADQRLKDAQSIVDFSLDEAGSM--DQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQR-ELHSK-N 526 (688)
Q Consensus 451 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~-~ 526 (688)
..|...+.+..+.|+++.|...+.++....+.. ..+.+.+..++++...|+..+|+..++..+....... ..... .
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~ 226 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAE 226 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHH
Confidence 789999999999999999999999988765321 2567888899999999999999999999888322211 00000 0
Q ss_pred cccc-------cccccccccCCcchHHHHHHHHHHHHHc------CChhHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 005603 527 FHKT-------KYITSEAPSVKNLEIATWQDLATIYMKL------GSLPDAEICTEKAKSIEFYSPGSWHTTGMLFE 590 (688)
Q Consensus 527 ~~~~-------~~~~~~~~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 590 (688)
.... ................++..+|...... +..+++...|+++++..|....+|+.+|..+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 227 LKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred HhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 0000 0000001111122355666666666666 66777777777777777777777777666554
No 228
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.90 E-value=0.039 Score=56.54 Aligned_cols=116 Identities=9% Similarity=-0.078 Sum_probs=85.3
Q ss_pred hhHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHhCCCChHHHHHHH
Q 005603 561 LPDAEICTEKAKSIEFYSP-GSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEI-LMKLGRQSMPIARSFL 638 (688)
Q Consensus 561 ~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~~~A~~~~ 638 (688)
++.--..+++++.+...++ -+|..+-..-.+..-.+.|...|.++-+..-....++..-|.+ |...++.. .|...|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~--~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKE--TAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChh--HHHHHH
Confidence 5666677777777654443 3466666666666667888888988876533333344433333 34567777 899999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 005603 639 MNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYEL 678 (688)
Q Consensus 639 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 678 (688)
+-.++..++.+..-......+...|+-..|...|++++..
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 9999999999998888888899999999999999999875
No 229
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.90 E-value=0.044 Score=57.15 Aligned_cols=339 Identities=10% Similarity=0.007 Sum_probs=202.3
Q ss_pred HHHHHhhhcCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH-HcCCcHHHHHHHHHhHHHHHh
Q 005603 279 MEKVASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYS-AAGQNEAALNLLKKDQVSRGV 357 (688)
Q Consensus 279 ~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~~~ 357 (688)
.....+...|.--..|-..+..-.+.|..+.+.+.|++.+..-|-..+.|..+-.... ..|+.+.-...|+++.
T Consensus 67 ~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~----- 141 (577)
T KOG1258|consen 67 VYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK----- 141 (577)
T ss_pred HHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH-----
Confidence 4677888889888899999999999999999999999999999988888876544433 4556666556777775
Q ss_pred HhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC------CH
Q 005603 358 IQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQR------NV 431 (688)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g------~~ 431 (688)
...+. +......|-..-..-..+++. ..-..+|++.++.--....-++..=.-+..+. ..
T Consensus 142 -~~vG~--dF~S~~lWdkyie~en~qks~-----------k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~ 207 (577)
T KOG1258|consen 142 -SYVGL--DFLSDPLWDKYIEFENGQKSW-----------KRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSI 207 (577)
T ss_pred -Hhccc--chhccHHHHHHHHHHhccccH-----------HHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCH
Confidence 21111 111122232222222334444 66666677666543222222222111111111 11
Q ss_pred HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhhcCCCCcHHHHHHHH-------HHHHHcCChH
Q 005603 432 EAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSI-VDFSLDEAGSMDQLELLRLKA-------VLQIAQEQPK 503 (688)
Q Consensus 432 ~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~-~~~al~~~p~~~~~~~~~~la-------~~~~~~g~~~ 503 (688)
+++.+.-...... ......+...+-.+. .+..-...+ ........+. .++.......
T Consensus 208 d~~~~l~~~~~~~-------------~~~~~~~~~~e~~~~~v~~~~~~s~--~l~~~~~~l~~~~~~~~~~~~~s~~~~ 272 (577)
T KOG1258|consen 208 DELIQLRSDVAER-------------SKITHSQEPLEELEIGVKDSTDPSK--SLTEEKTILKRIVSIHEKVYQKSEEEE 272 (577)
T ss_pred HHHHHHhhhHHhh-------------hhcccccChhHHHHHHHhhccCccc--hhhHHHHHHHHHHHHHHHHHHhhHhHH
Confidence 1111111111000 000000011110100 011111111 0000110111 1112222222
Q ss_pred HHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHH
Q 005603 504 QAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWH 583 (688)
Q Consensus 504 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 583 (688)
+.+-.++..+. ..+...-...+.....|......-...|+++.....|++++--.......|.
T Consensus 273 ~kr~~fE~~Ik-----------------rpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWi 335 (577)
T KOG1258|consen 273 EKRWGFEEGIK-----------------RPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWI 335 (577)
T ss_pred HHHHhhhhhcc-----------------ccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHH
Confidence 23333333332 2233344445557788888888889999999999999999887778888999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005603 584 TTGMLFEAQSQYKEALVSFSISLAI-EPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKME 662 (688)
Q Consensus 584 ~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 662 (688)
..+......|+.+-|-..+..+.++ .|..+..+..-+..-...|+++ .|...+++..+..|+...+-.....+....
T Consensus 336 ky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~--~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~ 413 (577)
T KOG1258|consen 336 KYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFD--DAKVILQRIESEYPGLVEVVLRKINWERRK 413 (577)
T ss_pred HHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHH--HHHHHHHHHHhhCCchhhhHHHHHhHHHHh
Confidence 9999999999999999888888876 4666777777888888889998 999999999988898888877777888888
Q ss_pred CCHHHHHH
Q 005603 663 GSLQQAAD 670 (688)
Q Consensus 663 g~~~~A~~ 670 (688)
|+.+.+..
T Consensus 414 ~~~~~~~~ 421 (577)
T KOG1258|consen 414 GNLEDANY 421 (577)
T ss_pred cchhhhhH
Confidence 98888883
No 230
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.90 E-value=2.9e-05 Score=51.85 Aligned_cols=42 Identities=21% Similarity=0.266 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 005603 580 GSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAE 621 (688)
Q Consensus 580 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 621 (688)
.+|..+|.+|...|++++|++.|+++++.+|+++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 345566666666666666666666666666666666655553
No 231
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=0.0015 Score=62.24 Aligned_cols=152 Identities=12% Similarity=-0.099 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-cCCCcH--HHHHHHHHHHHHcCCHHHHHHHHH
Q 005603 398 KEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDT-VAGNSG--RGWKLLALILSADQRLKDAQSIVD 474 (688)
Q Consensus 398 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~~--~~~~~la~~~~~~~~~~~A~~~~~ 474 (688)
.+|-..+++.++-.|.+.-++..--..++..|+...-...+++++.. +|+-|. -+.-.++..+...|-|++|++..+
T Consensus 120 h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ 199 (491)
T KOG2610|consen 120 HEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQAD 199 (491)
T ss_pred cHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHH
Confidence 77777778888778887777777777777788888777777777766 555541 233345666777788888888888
Q ss_pred HHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHH
Q 005603 475 FSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATI 554 (688)
Q Consensus 475 ~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 554 (688)
+++++++ .+..+...++.++...|++.++.+...+--..+... .-....-|-..+..
T Consensus 200 ralqiN~--~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s---------------------~mlasHNyWH~Al~ 256 (491)
T KOG2610|consen 200 RALQINR--FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS---------------------WMLASHNYWHTALF 256 (491)
T ss_pred hhccCCC--cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh---------------------hHHHhhhhHHHHHh
Confidence 8888887 677777788888888888888877776554433310 00012334456667
Q ss_pred HHHcCChhHHHHHHHHHH
Q 005603 555 YMKLGSLPDAEICTEKAK 572 (688)
Q Consensus 555 ~~~~g~~~~A~~~~~~al 572 (688)
+...+.|+.|+..|.+-+
T Consensus 257 ~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 257 HIEGAEYEKALEIYDREI 274 (491)
T ss_pred hhcccchhHHHHHHHHHH
Confidence 777778888887776543
No 232
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.89 E-value=0.072 Score=59.02 Aligned_cols=340 Identities=15% Similarity=0.029 Sum_probs=207.1
Q ss_pred HHHHHHHHHhcC-CCCC---CHHHHHHHHHHHH-HcCCcHHHHHHHHHhHHHHHhHhhhcc-cchhhHHHHHHHHHHHHH
Q 005603 308 ELLAEYVEQALP-GIYN---RAERWYILALCYS-AAGQNEAALNLLKKDQVSRGVIQSTTS-QKEHFLAEAYKFLGICYG 381 (688)
Q Consensus 308 ~~A~~~~~~~l~-~~p~---~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~lg~~~~ 381 (688)
..|+++++-+++ ..+. +..+.+.+|.+++ ...+++.|...+.+++ ..... .-...+..+.+.++.++.
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~------~l~~~~~~~d~k~~~~~ll~~i~~ 111 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAI------LLCERHRLTDLKFRCQFLLARIYF 111 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HhccccchHHHHHHHHHHHHHHHH
Confidence 567888888874 2221 3467888999888 8899999999999996 22222 223345677788899998
Q ss_pred hhhhhccchHHhhHHHHHHHHHHHHHHHcCCC---C-HHHHHHH--HHHHHHcCCHHHHHHHHHHHHhhc--CCCc---H
Q 005603 382 NVARKSISDTERVFFQKEALESLNCAFLNERE---D-PEMMYYL--GLEHAVQRNVEAAFDYAIMYSDTV--AGNS---G 450 (688)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~-~~~~~~l--a~~~~~~g~~~~A~~~~~~~l~~~--p~~~---~ 450 (688)
..+.. . |...+++.++.... . ....+.+ ...+...+++..|++.++...... ++++ +
T Consensus 112 ~~~~~-----------~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v 179 (608)
T PF10345_consen 112 KTNPK-----------A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFV 179 (608)
T ss_pred hcCHH-----------H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHH
Confidence 88886 5 88888888855433 2 2222222 222333479999999999988765 3443 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC------C--CCcHHHHHHHHH--HHHHcCChHHHHHHHHHHHHHHHhhH
Q 005603 451 RGWKLLALILSADQRLKDAQSIVDFSLDEAG------S--MDQLELLRLKAV--LQIAQEQPKQAIGTYRILLAMIQAQR 520 (688)
Q Consensus 451 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~--~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~ 520 (688)
-+....+.++...+..+++++.++++..... . .....++..+-. +....|+++.+...++++-.......
T Consensus 180 ~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~ 259 (608)
T PF10345_consen 180 LASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIK 259 (608)
T ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Confidence 2223345667777888889888888753221 1 123445555444 45567887788777666655444333
Q ss_pred Hh--hhhcccccccccc---------------ccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC------
Q 005603 521 EL--HSKNFHKTKYITS---------------EAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFY------ 577 (688)
Q Consensus 521 ~~--~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------ 577 (688)
.. +......+...+. .-++......-++..-|......+..++|.+++.++++.-.+
T Consensus 260 ~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~ 339 (608)
T PF10345_consen 260 KSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSP 339 (608)
T ss_pred cCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCC
Confidence 22 1111111111110 011111112333444456666777777888888888753111
Q ss_pred -Ch-------------------hHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CC------CHHHHHHHHHHHHHhCC
Q 005603 578 -SP-------------------GSWHTTGMLFEAQSQYKEALVSFSISLAIE---PD------YIPSIISTAEILMKLGR 628 (688)
Q Consensus 578 -~~-------------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~------~~~~~~~la~~~~~~g~ 628 (688)
.+ ......+.+..-.+++..|......+.... |. .+..++..|..+...|+
T Consensus 340 ~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~ 419 (608)
T PF10345_consen 340 SAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGD 419 (608)
T ss_pred CCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCC
Confidence 00 113456677778899999988888776542 22 36678888999999999
Q ss_pred CChHHHHHHHH--------HHHHhCCCCH---HHHHHHHHHHHHcCCHHH
Q 005603 629 QSMPIARSFLM--------NALRLEPTNH---DAWMNLGLISKMEGSLQQ 667 (688)
Q Consensus 629 ~~~~~A~~~~~--------~al~~~p~~~---~~~~~lg~~~~~~g~~~~ 667 (688)
.+ .|...|. .+....+.+. -+..++..++...+....
T Consensus 420 l~--~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~ 467 (608)
T PF10345_consen 420 LE--AALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDD 467 (608)
T ss_pred HH--HHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccch
Confidence 88 9999998 3333344332 234566777766665333
No 233
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.0025 Score=58.08 Aligned_cols=199 Identities=13% Similarity=0.153 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---CCCCcHHH
Q 005603 417 MMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGN-----SGRGWKLLALILSADQRLKDAQSIVDFSLDEA---GSMDQLEL 488 (688)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~ 488 (688)
.+..-+..|...++|++|..++.++.+-...+ .+.++-..+.+......+.++..+++++.... ..++....
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAm 112 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAM 112 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHH
Confidence 44455677888899999999999998654333 23455667777888899999999999998643 22244444
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHH
Q 005603 489 LRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICT 568 (688)
Q Consensus 489 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 568 (688)
-...+--....-++++|+.+|++++.+....... ....+.+...+.++.+...+++|-..+
T Consensus 113 aleKAak~lenv~Pd~AlqlYqralavve~~dr~-------------------~ma~el~gk~sr~lVrl~kf~Eaa~a~ 173 (308)
T KOG1585|consen 113 ALEKAAKALENVKPDDALQLYQRALAVVEEDDRD-------------------QMAFELYGKCSRVLVRLEKFTEAATAF 173 (308)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchH-------------------HHHHHHHHHhhhHhhhhHHhhHHHHHH
Confidence 4555556677889999999999999986653111 113566778889999999999999888
Q ss_pred HHHHhcC------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 005603 569 EKAKSIE------FYSPGSWHTTGMLFEAQSQYKEALVSFSISLAI----EPDYIPSIISTAEILMKLGRQSMPIARSF 637 (688)
Q Consensus 569 ~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~~~A~~~ 637 (688)
.+-.... +.....+.....++....+|..|..+++...++ .|++..+..+|-..| ..|+.+ +....
T Consensus 174 lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E--~~~kv 249 (308)
T KOG1585|consen 174 LKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIE--EIKKV 249 (308)
T ss_pred HHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHH--HHHHH
Confidence 7754432 233344556666777778999999999997765 355666666665554 345544 44443
No 234
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.85 E-value=0.027 Score=59.77 Aligned_cols=159 Identities=14% Similarity=0.031 Sum_probs=119.8
Q ss_pred HcCCHHHHHHHHHHHHhhcCCC-cHHHHHHHH-----HHHH----HcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 005603 427 VQRNVEAAFDYAIMYSDTVAGN-SGRGWKLLA-----LILS----ADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQ 496 (688)
Q Consensus 427 ~~g~~~~A~~~~~~~l~~~p~~-~~~~~~~la-----~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~ 496 (688)
-.||-+.++..+.++.+...-. +...+..++ ..+. .....+.|.++++......| +..-.++..|+++
T Consensus 200 F~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP--~s~lfl~~~gR~~ 277 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYP--NSALFLFFEGRLE 277 (468)
T ss_pred cCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHH
Confidence 4689999999999987732211 111111111 1111 34567889999999999999 8888999999999
Q ss_pred HHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 005603 497 IAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEF 576 (688)
Q Consensus 497 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 576 (688)
...|+.++|++.|++++.....- .....-.++.++.++..+.+|++|..++.+..+.+.
T Consensus 278 ~~~g~~~~Ai~~~~~a~~~q~~~---------------------~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~ 336 (468)
T PF10300_consen 278 RLKGNLEEAIESFERAIESQSEW---------------------KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK 336 (468)
T ss_pred HHhcCHHHHHHHHHHhccchhhH---------------------HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc
Confidence 99999999999999988532221 112466789999999999999999999999999877
Q ss_pred CChh-HHHHHHHHHHHcCCH-------HHHHHHHHHHHhc
Q 005603 577 YSPG-SWHTTGMLFEAQSQY-------KEALVSFSISLAI 608 (688)
Q Consensus 577 ~~~~-~~~~lg~~~~~~g~~-------~~A~~~~~~al~~ 608 (688)
.+.. ..+..|.++...|+. ++|...|.++-..
T Consensus 337 WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 337 WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 6544 356678889999998 8888888877544
No 235
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.82 E-value=0.00055 Score=67.31 Aligned_cols=136 Identities=6% Similarity=-0.037 Sum_probs=110.5
Q ss_pred HHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhcCCCcH
Q 005603 372 AYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAV-QRNVEAAFDYAIMYSDTVAGNSG 450 (688)
Q Consensus 372 ~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~ 450 (688)
+|..+.....+.+.. +.|..+|.++.+..+....+|...|.+-.. .++.+.|...|+.+++..|.+.
T Consensus 3 v~i~~m~~~~r~~g~-----------~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~- 70 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGI-----------EAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP- 70 (280)
T ss_dssp HHHHHHHHHHHHHHH-----------HHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H-
T ss_pred HHHHHHHHHHHhCCh-----------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH-
Confidence 344455555555556 999999999997667788999999999766 6677779999999999999998
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Q 005603 451 RGWKLLALILSADQRLKDAQSIVDFSLDEAGSMD-QLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQ 519 (688)
Q Consensus 451 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 519 (688)
..|......+...++.+.|..+|++++..-+... ...+|......-...|+.+...++.+++.+..|..
T Consensus 71 ~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 71 DFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999998776322 34688888889999999999999999999987774
No 236
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.00012 Score=66.40 Aligned_cols=106 Identities=16% Similarity=0.118 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHhc--------CCCC----------hhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005603 544 EIATWQDLATIYMKLGSLPDAEICTEKAKSI--------EFYS----------PGSWHTTGMLFEAQSQYKEALVSFSIS 605 (688)
Q Consensus 544 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~----------~~~~~~lg~~~~~~g~~~~A~~~~~~a 605 (688)
...++..-|+-++..|+|.+|...|+.|+.. .|.. ...+.+.+.|+...|+|-++++.....
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 4778888999999999999999999988642 3433 334677788888888888888888888
Q ss_pred HhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHH
Q 005603 606 LAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDA 651 (688)
Q Consensus 606 l~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~ 651 (688)
+..+|++..+++..|.+....=+.. +|...|.++++++|.-..+
T Consensus 257 L~~~~~nvKA~frRakAhaa~Wn~~--eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKAHAAVWNEA--EAKADLQKVLELDPSLASV 300 (329)
T ss_pred HhcCCchHHHHHHHHHHHHhhcCHH--HHHHHHHHHHhcChhhHHH
Confidence 8888888888888888877766666 8888888888888865443
No 237
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.81 E-value=0.0019 Score=65.41 Aligned_cols=187 Identities=15% Similarity=0.030 Sum_probs=98.1
Q ss_pred HHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHH
Q 005603 425 HAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQ 504 (688)
Q Consensus 425 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~ 504 (688)
..+..+...-++..+++++++|+.. .++..++.- ......+|+.+++++++.... .+.........|..-+
T Consensus 178 AWRERnp~aRIkaA~eALei~pdCA-dAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~------~lg~s~~~~~~g~~~e 248 (539)
T PF04184_consen 178 AWRERNPQARIKAAKEALEINPDCA-DAYILLAEE--EASTIVEAEELLRQAVKAGEA------SLGKSQFLQHHGHFWE 248 (539)
T ss_pred HHhcCCHHHHHHHHHHHHHhhhhhh-HHHhhcccc--cccCHHHHHHHHHHHHHHHHH------hhchhhhhhcccchhh
Confidence 3445667777777778888888777 777766642 223356677777776654430 0000011111111111
Q ss_pred HHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC--ChhHH
Q 005603 505 AIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFY--SPGSW 582 (688)
Q Consensus 505 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~ 582 (688)
.. .++ +......+-..+|.+..++|+.++|++.++..++.+|. +..++
T Consensus 249 ~~--~~R----------------------------dt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~Ir 298 (539)
T PF04184_consen 249 AW--HRR----------------------------DTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIR 298 (539)
T ss_pred hh--hcc----------------------------ccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHH
Confidence 00 000 00012444456677777777777777777777766553 34466
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHh-CCC-----------C--hHHHHHHHHHHHHhCCC
Q 005603 583 HTTGMLFEAQSQYKEALVSFSISLAI-EPDYIPSIISTAEILMKL-GRQ-----------S--MPIARSFLMNALRLEPT 647 (688)
Q Consensus 583 ~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~-g~~-----------~--~~~A~~~~~~al~~~p~ 647 (688)
.++..++...+.|.++...+.+--++ -|+.+...+..+.+..+. ++. . -..|.+.+.+|++.+|.
T Consensus 299 enLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 299 ENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 67777777777777777666664332 244444444433333221 110 0 01456777888887776
Q ss_pred CHH
Q 005603 648 NHD 650 (688)
Q Consensus 648 ~~~ 650 (688)
.+.
T Consensus 379 Vp~ 381 (539)
T PF04184_consen 379 VPK 381 (539)
T ss_pred Cch
Confidence 554
No 238
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.81 E-value=3e-05 Score=48.44 Aligned_cols=34 Identities=32% Similarity=0.468 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcccCCC
Q 005603 649 HDAWMNLGLISKMEGSLQQAADYFQAAYELKLSA 682 (688)
Q Consensus 649 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 682 (688)
+.+|+++|.+|..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999974
No 239
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=0.017 Score=63.12 Aligned_cols=145 Identities=15% Similarity=0.036 Sum_probs=89.3
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhh
Q 005603 289 WDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHF 368 (688)
Q Consensus 289 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 368 (688)
+.|.+|..+|.+-.+.|...+|++.|-++ +++..+........+.|.|++-+..+.-+- . ....+
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaR------k-k~~E~--- 1166 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMAR------K-KVREP--- 1166 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH------H-hhcCc---
Confidence 56788888888888888888888888765 567777788888888888888887777663 1 01111
Q ss_pred HHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 005603 369 LAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGN 448 (688)
Q Consensus 369 ~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 448 (688)
..-..|-.+|.+.++. .+-...+ ..|+.+ -.-..|.-++..|.|+.|.-+|...
T Consensus 1167 --~id~eLi~AyAkt~rl-----------~elE~fi-----~gpN~A-~i~~vGdrcf~~~~y~aAkl~y~~v------- 1220 (1666)
T KOG0985|consen 1167 --YIDSELIFAYAKTNRL-----------TELEEFI-----AGPNVA-NIQQVGDRCFEEKMYEAAKLLYSNV------- 1220 (1666)
T ss_pred --cchHHHHHHHHHhchH-----------HHHHHHh-----cCCCch-hHHHHhHHHhhhhhhHHHHHHHHHh-------
Confidence 2222333445555554 3322221 133333 2334566666666666666555432
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005603 449 SGRGWKLLALILSADQRLKDAQSIVDFS 476 (688)
Q Consensus 449 ~~~~~~~la~~~~~~~~~~~A~~~~~~a 476 (688)
.-|..++..+...|+|+.|.+..+++
T Consensus 1221 --SN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1221 --SNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 55666666666677777666666554
No 240
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.79 E-value=0.03 Score=55.16 Aligned_cols=100 Identities=19% Similarity=0.131 Sum_probs=69.1
Q ss_pred hhhcCCHHHHHhhhhcCCCCccccchhhhhhhhcccccccCCCCCCCCCCCCCCCcchhHHHHHHHHHHHhhhhHHhhC-
Q 005603 77 EYQRGNYDAALQVFQGIDIVSLTPRMTRAVVERTRPLRKHRSKGEKADSVPPPGLMSLHSISLLLEAILLKAKSLEELG- 155 (688)
Q Consensus 77 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~g- 155 (688)
...+||++.|..+|.++.. +.+ .+.......+++.+|.-|..+...+
T Consensus 3 A~~~~~~~~A~~~~~K~~~--~~~------------------------------~~~~~~~~~La~~~yn~G~~l~~~~~ 50 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKD--LLN------------------------------SLDPDMAEELARVCYNIGKSLLSKKD 50 (278)
T ss_pred chhhCCHHHHHHHHHHhhh--HHh------------------------------cCCcHHHHHHHHHHHHHHHHHHHcCC
Confidence 3468999999999999971 100 0112444567889999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhcCCCCCCCCCCccccHHHHHHHHHHHhHHHHHHcCCHHHH
Q 005603 156 HCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKALELLPHLWIKAGLLEEA 213 (688)
Q Consensus 156 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA 213 (688)
++++|+..+++..++++.. +..... .....+.-...+..++.+|...+.++..
T Consensus 51 ~~~~a~~wL~~a~~~l~~~-~~~~~~----~~~~~elr~~iL~~La~~~l~~~~~~~~ 103 (278)
T PF08631_consen 51 KYEEAVKWLQRAYDILEKP-GKMDKL----SPDGSELRLSILRLLANAYLEWDTYESV 103 (278)
T ss_pred ChHHHHHHHHHHHHHHHhh-hhcccc----CCcHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 9999999999999997763 111111 1133455666777777778777766533
No 241
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.79 E-value=0.052 Score=54.47 Aligned_cols=49 Identities=22% Similarity=0.264 Sum_probs=40.2
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005603 623 LMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQA 674 (688)
Q Consensus 623 ~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 674 (688)
++..|++. ++.-+-.-..++.| ++.++..+|.++....+|++|..++..
T Consensus 472 Lysqgey~--kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 472 LYSQGEYH--KCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHhcccHH--HHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 44556665 66666666778899 899999999999999999999999874
No 242
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.79 E-value=0.00059 Score=69.60 Aligned_cols=100 Identities=15% Similarity=-0.007 Sum_probs=74.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCC
Q 005603 422 GLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQ 501 (688)
Q Consensus 422 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~ 501 (688)
|.....+|+...|+.++..++...|.........+|.++...|-..+|-.++.+++.+.. ..+-.++.+|..+..+.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~--sepl~~~~~g~~~l~l~~ 691 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINS--SEPLTFLSLGNAYLALKN 691 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcc--cCchHHHhcchhHHHHhh
Confidence 334455788888888888888777765435567788888888878888888888887775 566777788888888888
Q ss_pred hHHHHHHHHHHHHHHHhhHHhh
Q 005603 502 PKQAIGTYRILLAMIQAQRELH 523 (688)
Q Consensus 502 ~~~A~~~~~~al~~~~~~~~~~ 523 (688)
.+.|++.|++++...|+....-
T Consensus 692 i~~a~~~~~~a~~~~~~~~~~~ 713 (886)
T KOG4507|consen 692 ISGALEAFRQALKLTTKCPECE 713 (886)
T ss_pred hHHHHHHHHHHHhcCCCChhhH
Confidence 8888888888888777765543
No 243
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.78 E-value=4.9e-05 Score=47.49 Aligned_cols=34 Identities=32% Similarity=0.563 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcccCCC
Q 005603 649 HDAWMNLGLISKMEGSLQQAADYFQAAYELKLSA 682 (688)
Q Consensus 649 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 682 (688)
+.+|+.+|.++...|++++|+++|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678999999999999999999999999999975
No 244
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.007 Score=55.31 Aligned_cols=201 Identities=12% Similarity=0.037 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 005603 371 EAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNERED------PEMMYYLGLEHAVQRNVEAAFDYAIMYSDT 444 (688)
Q Consensus 371 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 444 (688)
..+..-+.+|....++ ++|..++.++.+-..++ ..++-..+.+......+.++..+++++..+
T Consensus 32 s~yekAAvafRnAk~f-----------eKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~l 100 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKF-----------EKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHhhccH-----------HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3444455667777777 88888888888443333 334455666777788999999999999876
Q ss_pred c-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC----CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 005603 445 V-----AGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSM----DQLELLRLKAVLQIAQEQPKQAIGTYRILLAM 515 (688)
Q Consensus 445 ~-----p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 515 (688)
. |+.. ..-...+--.....+.++|+++|++++...... ...+.+...++++.+..++.+|-..+.+-...
T Consensus 101 Y~E~GspdtA-AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~ 179 (308)
T KOG1585|consen 101 YVECGSPDTA-AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVA 179 (308)
T ss_pred HHHhCCcchH-HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhH
Confidence 3 3333 333344445567889999999999998654321 23456677888999999999998888776655
Q ss_pred HHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC----CCChhHHHHHHHHHHH
Q 005603 516 IQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIE----FYSPGSWHTTGMLFEA 591 (688)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~ 591 (688)
.... ...+.....+.....+|....+|..|..+++..-++. |++..+..+|-..| .
T Consensus 180 ~~~~-------------------~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d 239 (308)
T KOG1585|consen 180 ADKC-------------------DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-D 239 (308)
T ss_pred HHHH-------------------hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-c
Confidence 3321 1122235556666777788889999999999977654 34455555555444 5
Q ss_pred cCCHHHHHHHHH
Q 005603 592 QSQYKEALVSFS 603 (688)
Q Consensus 592 ~g~~~~A~~~~~ 603 (688)
.|+.++....+.
T Consensus 240 ~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 240 EGDIEEIKKVLS 251 (308)
T ss_pred cCCHHHHHHHHc
Confidence 677777666553
No 245
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.76 E-value=0.018 Score=59.22 Aligned_cols=138 Identities=20% Similarity=0.216 Sum_probs=108.1
Q ss_pred cchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C-C----
Q 005603 542 NLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEF----YSPGSWHTTGMLFEAQSQYKEALVSFSISLAIE-P-D---- 611 (688)
Q Consensus 542 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p-~---- 611 (688)
......|...+.+..+.|+++.|...+.++...++ ..+.+.+..+.+....|+..+|+..++..+... . .
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 34678899999999999999999999999988653 256778888999999999999999998887711 0 0
Q ss_pred ----------------------------CHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005603 612 ----------------------------YIPSIISTAEILMKL------GRQSMPIARSFLMNALRLEPTNHDAWMNLGL 657 (688)
Q Consensus 612 ----------------------------~~~~~~~la~~~~~~------g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 657 (688)
...++..+|...... +..+ ++...|..+++.+|+...+|+.+|.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSD--EILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHH--HHHHHHHHHHHhChhHHHHHHHHHH
Confidence 123455566655566 4444 8999999999999999999999998
Q ss_pred HHHHcCC-----------------HHHHHHHHHHHHcccCC
Q 005603 658 ISKMEGS-----------------LQQAADYFQAAYELKLS 681 (688)
Q Consensus 658 ~~~~~g~-----------------~~~A~~~~~~al~l~p~ 681 (688)
.+...=+ ...|+.+|-+++...+.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 301 FNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 8754311 24588999999998887
No 246
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.0051 Score=58.30 Aligned_cols=133 Identities=21% Similarity=0.133 Sum_probs=90.6
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchh
Q 005603 288 EWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEH 367 (688)
Q Consensus 288 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 367 (688)
|.....-...+.-....|++.+|...|..++...|++.++...++.|+...|+.+.|..++...- .....
T Consensus 131 ~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP----------~~~~~ 200 (304)
T COG3118 131 PAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALP----------LQAQD 200 (304)
T ss_pred ChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCc----------ccchh
Confidence 44445566677788999999999999999999999999999999999999999999999998873 11111
Q ss_pred hHHHHHHH-HH--HHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 005603 368 FLAEAYKF-LG--ICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDT 444 (688)
Q Consensus 368 ~~~~~~~~-lg--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 444 (688)
..+.. .+ ..+...... . -...+++.+..+|++.++-+.+|..+...|+.+.|++.+-..++.
T Consensus 201 ---~~~~~l~a~i~ll~qaa~~-----------~-~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 201 ---KAAHGLQAQIELLEQAAAT-----------P-EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred ---hHHHHHHHHHHHHHHHhcC-----------C-CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11111 11 111111111 1 123445555667777777777777777777777777766666655
Q ss_pred c
Q 005603 445 V 445 (688)
Q Consensus 445 ~ 445 (688)
+
T Consensus 266 d 266 (304)
T COG3118 266 D 266 (304)
T ss_pred c
Confidence 4
No 247
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.72 E-value=3.1e-05 Score=48.00 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=22.7
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHcCCHHHHH
Q 005603 568 TEKAKSIEFYSPGSWHTTGMLFEAQSQYKEAL 599 (688)
Q Consensus 568 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 599 (688)
|+++++++|+++.+|+++|.++...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56677777777777777777777777777664
No 248
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.71 E-value=0.12 Score=56.41 Aligned_cols=302 Identities=14% Similarity=0.051 Sum_probs=187.5
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHH
Q 005603 325 AERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESL 404 (688)
Q Consensus 325 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~ 404 (688)
.+.+..-+.-+...|...+|+...-.+- ++ ...+...-..|.-+...++. ..+
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA~-----------d~-~~aa~lle~~~~~L~~~~~l---------------sll 399 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAAG-----------DP-EMAADLLEQLEWQLFNGSEL---------------SLL 399 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhCC-----------CH-HHHHHHHHhhhhhhhcccch---------------HHH
Confidence 5666677777778888888876555441 12 11122222223333333332 233
Q ss_pred HHHHHcCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC--Cc------HHHHHHHHHHHHHcCCHHHHHH
Q 005603 405 NCAFLNER-----EDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAG--NS------GRGWKLLALILSADQRLKDAQS 471 (688)
Q Consensus 405 ~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~------~~~~~~la~~~~~~~~~~~A~~ 471 (688)
...++.-| .+|......++......++++|.....++...-+. .. ....-..|.+....|++++|++
T Consensus 400 ~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~ 479 (894)
T COG2909 400 LAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAED 479 (894)
T ss_pred HHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 33333333 34667777889999999999999998887665433 11 1344566788899999999999
Q ss_pred HHHHHHhhcCCC---CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHH
Q 005603 472 IVDFSLDEAGSM---DQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATW 548 (688)
Q Consensus 472 ~~~~al~~~p~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (688)
+.+.++..-|.. ....++...+.+..-.|++++|..+.+++.+..... +.......+.
T Consensus 480 lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~-------------------~~~~l~~~~~ 540 (894)
T COG2909 480 LARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH-------------------DVYHLALWSL 540 (894)
T ss_pred HHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc-------------------ccHHHHHHHH
Confidence 999999876632 345567788999999999999999999998875543 1112234455
Q ss_pred HHHHHHHHHcCC--hhHHHHHHHHHHh----cCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCC--H-HH
Q 005603 549 QDLATIYMKLGS--LPDAEICTEKAKS----IEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIE----PDY--I-PS 615 (688)
Q Consensus 549 ~~la~~~~~~g~--~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~--~-~~ 615 (688)
...+.++..+|+ +.+....+...-. ..|-........+.++...-+++.+.......++.. |.. . -+
T Consensus 541 ~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~ 620 (894)
T COG2909 541 LQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLA 620 (894)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHH
Confidence 666788888883 3333333333222 233333344444444444444777776666666542 221 1 12
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC-H------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 005603 616 IISTAEILMKLGRQSMPIARSFLMNALRLEPTN-H------DAWMNLGLISKMEGSLQQAADYFQA 674 (688)
Q Consensus 616 ~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~-~------~~~~~lg~~~~~~g~~~~A~~~~~~ 674 (688)
++.++.+....|+.+ +|...+.....+..+. + .+...........|+..+|.....+
T Consensus 621 ~~~LA~l~~~~Gdl~--~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 621 LSMLAELEFLRGDLD--KALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHHHhcCCHH--HHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 347899999999998 9999888887653222 1 1122223344678899988888776
No 249
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.69 E-value=0.0041 Score=63.05 Aligned_cols=183 Identities=14% Similarity=0.036 Sum_probs=126.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccc
Q 005603 459 ILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAP 538 (688)
Q Consensus 459 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (688)
-..+..+...-++...+|++++| +.++++..++.- ...-..+|.++|+++++....
T Consensus 177 ~AWRERnp~aRIkaA~eALei~p--dCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~-------------------- 232 (539)
T PF04184_consen 177 KAWRERNPQARIKAAKEALEINP--DCADAYILLAEE--EASTIVEAEELLRQAVKAGEA-------------------- 232 (539)
T ss_pred HHHhcCCHHHHHHHHHHHHHhhh--hhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHH--------------------
Confidence 33456677788888899999999 788888776642 233468899999999887433
Q ss_pred cCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHH
Q 005603 539 SVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFY--SPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPD--YIP 614 (688)
Q Consensus 539 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~ 614 (688)
.+.........|..-+. ....+. ...+...+|.+..+.|+.++|++.++..++..|. +..
T Consensus 233 ---------~lg~s~~~~~~g~~~e~-------~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~ 296 (539)
T PF04184_consen 233 ---------SLGKSQFLQHHGHFWEA-------WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLN 296 (539)
T ss_pred ---------hhchhhhhhcccchhhh-------hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhh
Confidence 11111111122221111 111111 2445678999999999999999999999988775 466
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH-cCC---------------HHHHHHHHHHHHc
Q 005603 615 SIISTAEILMKLGRQSMPIARSFLMNALRL-EPTNHDAWMNLGLISKM-EGS---------------LQQAADYFQAAYE 677 (688)
Q Consensus 615 ~~~~la~~~~~~g~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~-~g~---------------~~~A~~~~~~al~ 677 (688)
++.++..++...+.+. ++...+.+.-.+ -|+.+...|.-+.+-.+ .|+ -..|.+...+|++
T Consensus 297 IrenLie~LLelq~Ya--d~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAve 374 (539)
T PF04184_consen 297 IRENLIEALLELQAYA--DVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVE 374 (539)
T ss_pred HHHHHHHHHHhcCCHH--HHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHH
Confidence 8999999999999998 999888886443 36667776766654432 122 2457889999999
Q ss_pred ccCCCC
Q 005603 678 LKLSAP 683 (688)
Q Consensus 678 l~p~~~ 683 (688)
.+|.-|
T Consensus 375 fNPHVp 380 (539)
T PF04184_consen 375 FNPHVP 380 (539)
T ss_pred hCCCCc
Confidence 999755
No 250
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.57 E-value=0.011 Score=59.22 Aligned_cols=178 Identities=12% Similarity=0.026 Sum_probs=119.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHH---cCCcHHHHHHHHHhHHHHHhHhhhc
Q 005603 290 DAEIMDHLTYALSVTGQFELLAEYVEQALPG----IYNRAERWYILALCYSA---AGQNEAALNLLKKDQVSRGVIQSTT 362 (688)
Q Consensus 290 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~l~~~~~~~~~~ 362 (688)
++.+...+-.+|-...+|+.-++..+.+-.. .++.+.+.+.+|.++-+ .|+.++|+.++..++ ..
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l--------~~ 211 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVL--------ES 211 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHH--------hc
Confidence 3445556666788888999988888887665 55677888999999999 999999999999976 23
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005603 363 SQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYS 442 (688)
Q Consensus 363 ~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 442 (688)
..+.. ++++..+|.+|-..-. .+........++|+..|.++...+|+. -.-.+++.++...|.-.+...-.++..
T Consensus 212 ~~~~~--~d~~gL~GRIyKD~~~--~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~ 286 (374)
T PF13281_consen 212 DENPD--PDTLGLLGRIYKDLFL--ESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIG 286 (374)
T ss_pred cCCCC--hHHHHHHHHHHHHHHH--HcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHH
Confidence 33333 6899999999876532 222223334799999999999999643 344556666666665333332222221
Q ss_pred --------hhc---CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 005603 443 --------DTV---AG-NSGRGWKLLALILSADQRLKDAQSIVDFSLDEAG 481 (688)
Q Consensus 443 --------~~~---p~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 481 (688)
+.. +. +. ...-.++.+..-.|++++|.+.+++++...|
T Consensus 287 ~~l~~llg~kg~~~~~~dY-Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 287 VKLSSLLGRKGSLEKMQDY-WDVATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred HHHHHHHHhhccccccccH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 111 11 11 2233455566677888888888888887766
No 251
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.00067 Score=61.67 Aligned_cols=99 Identities=19% Similarity=0.175 Sum_probs=87.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 005603 582 WHTTGMLFEAQSQYKEALVSFSISLAI------------------EPDYIPSIISTAEILMKLGRQSMPIARSFLMNALR 643 (688)
Q Consensus 582 ~~~lg~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~ 643 (688)
+..-|.-++..|+|.+|...|..|+.. +....+.+.+++.++...|++- ++++....++.
T Consensus 181 l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~y--evleh~seiL~ 258 (329)
T KOG0545|consen 181 LHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYY--EVLEHCSEILR 258 (329)
T ss_pred HHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHH--HHHHHHHHHHh
Confidence 445677788899999999999888643 2236778999999999999998 99999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccCCC
Q 005603 644 LEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKLSA 682 (688)
Q Consensus 644 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 682 (688)
.+|+|..+++..|.++...=+..+|.+.|.++++++|.-
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 999999999999999999999999999999999999964
No 252
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.53 E-value=0.08 Score=57.62 Aligned_cols=283 Identities=17% Similarity=0.099 Sum_probs=191.2
Q ss_pred cHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHH-----cCCCCH
Q 005603 341 NEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFL-----NEREDP 415 (688)
Q Consensus 341 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-----~~p~~~ 415 (688)
...|...++.+. .. .+ ..+...+|.+|..-+.-. ..+.+.|+.+|+.+.. ....++
T Consensus 228 ~~~a~~~~~~~a---------~~--g~--~~a~~~~g~~y~~G~~g~------~~d~e~a~~~l~~aa~~~~~~a~~~~~ 288 (552)
T KOG1550|consen 228 LSEAFKYYREAA---------KL--GH--SEAQYALGICYLAGTYGV------TQDLESAIEYLKLAAESFKKAATKGLP 288 (552)
T ss_pred hhHHHHHHHHHH---------hh--cc--hHHHHHHHHHHhhccccc------cccHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 456777777774 11 12 577788888877552221 2333889999988866 111256
Q ss_pred HHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhcCCCCcHH
Q 005603 416 EMMYYLGLEHAVQR-----NVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQ---RLKDAQSIVDFSLDEAGSMDQLE 487 (688)
Q Consensus 416 ~~~~~la~~~~~~g-----~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~ 487 (688)
.+.+.+|.+|.+.. +...|+.++.++.+... + .+.+.+|.++.... ++..|..+|..+.... +..
T Consensus 289 ~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~--~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G----~~~ 361 (552)
T KOG1550|consen 289 PAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN--P-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG----HIL 361 (552)
T ss_pred ccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC--c-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC----ChH
Confidence 68889999998853 77889999999987653 4 78889999887766 5789999999988765 577
Q ss_pred HHHHHHHHHHHc----CChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHc-CChh
Q 005603 488 LLRLKAVLQIAQ----EQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKL-GSLP 562 (688)
Q Consensus 488 ~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~ 562 (688)
+.+.++.++..- .+...|..+++++-+.. .+.+...++..+... +.++
T Consensus 362 A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g---------------------------~~~A~~~~~~~~~~g~~~~~ 414 (552)
T KOG1550|consen 362 AIYRLALCYELGLGVERNLELAFAYYKKAAEKG---------------------------NPSAAYLLGAFYEYGVGRYD 414 (552)
T ss_pred HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc---------------------------ChhhHHHHHHHHHHcccccc
Confidence 888888887653 56889999999998873 244455555554433 7777
Q ss_pred HHHHHHHHHHhcCCCChhH---H-HHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---CCCCh
Q 005603 563 DAEICTEKAKSIEFYSPGS---W-HTTGMLFEA----QSQYKEALVSFSISLAIEPDYIPSIISTAEILMKL---GRQSM 631 (688)
Q Consensus 563 ~A~~~~~~al~~~p~~~~~---~-~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~ 631 (688)
.+...+....+..-..+.. + ......... ..+.+.+...+.++.. ..+..+...+|.+|..- ++ ++
T Consensus 415 ~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~-d~ 491 (552)
T KOG1550|consen 415 TALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGR-DP 491 (552)
T ss_pred HHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCC-Ch
Confidence 7777666655544322211 1 111111111 1245556666666543 45677888888888765 22 13
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHcccCCC
Q 005603 632 PIARSFLMNALRLEPTNHDAWMNLGLISKME---GSLQQAADYFQAAYELKLSA 682 (688)
Q Consensus 632 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~l~p~~ 682 (688)
+.|...|.++.... +...+++|.++..- .....|.++|.++.+.+...
T Consensus 492 ~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~~ 542 (552)
T KOG1550|consen 492 EKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSRA 542 (552)
T ss_pred HHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCchh
Confidence 48999999988876 88999999998642 12789999999998766543
No 253
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.024 Score=52.50 Aligned_cols=217 Identities=11% Similarity=0.118 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Q 005603 398 KEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSAD-QRLKDAQSIVDFS 476 (688)
Q Consensus 398 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a 476 (688)
.++..+|+..+..+ ..-..|++....++.++|.+. .+|...-.++..+ .+..+-+++++..
T Consensus 43 r~~m~YfRAI~~~~-----------------E~S~RAl~LT~d~i~lNpAnY-TVW~yRr~iL~~l~~dL~~El~~l~eI 104 (318)
T KOG0530|consen 43 RDVMDYFRAIIAKN-----------------EKSPRALQLTEDAIRLNPANY-TVWQYRRVILRHLMSDLNKELEYLDEI 104 (318)
T ss_pred HHHHHHHHHHHhcc-----------------ccCHHHHHHHHHHHHhCcccc-hHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 56666666555444 344567788888999999998 8887766666554 4677888999999
Q ss_pred HhhcCCCCcHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHH
Q 005603 477 LDEAGSMDQLELLRLKAVLQIAQEQPK-QAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIY 555 (688)
Q Consensus 477 l~~~p~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 555 (688)
++.+| .+..+|...-.+....|++. .-++..+.++..+.. +-.+|...-.+.
T Consensus 105 ~e~np--KNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaK-------------------------NYHaWshRqW~~ 157 (318)
T KOG0530|consen 105 IEDNP--KNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAK-------------------------NYHAWSHRQWVL 157 (318)
T ss_pred HHhCc--cchhHHHHHHHHHHHhcCcccchHHHHHHHHhcccc-------------------------chhhhHHHHHHH
Confidence 99999 78899998888989999888 778888888886444 678888888999
Q ss_pred HHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHH-cC-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hCC
Q 005603 556 MKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEA-QS-----QYKEALVSFSISLAIEPDYIPSIISTAEILMK-LGR 628 (688)
Q Consensus 556 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~ 628 (688)
...+.|+.-+.+..+.++.+-.+-.+|+..-.+... .| ..+.-+.+..+.+...|++..+|..+.-++.. .|-
T Consensus 158 r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl 237 (318)
T KOG0530|consen 158 RFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGL 237 (318)
T ss_pred HHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCC
Confidence 999999999999999999888777777654332222 12 23445667788889999999999999888886 552
Q ss_pred CChHHHHHHHHHHH-HhCCCCHHHHHHHHHHH
Q 005603 629 QSMPIARSFLMNAL-RLEPTNHDAWMNLGLIS 659 (688)
Q Consensus 629 ~~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~ 659 (688)
...++........+ +.....|..+..+..+|
T Consensus 238 ~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 238 SSDSKVVSFVENLYLQLPKRSPFLLAFLLDLY 269 (318)
T ss_pred cCCchHHHHHHHHhhccCCCChhHHHHHHHHH
Confidence 22225666666555 34445666666666666
No 254
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.52 E-value=0.00021 Score=71.69 Aligned_cols=112 Identities=18% Similarity=0.149 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 005603 547 TWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKL 626 (688)
Q Consensus 547 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 626 (688)
..-.-+.-.+.-+.|+.|+..|.+++.++|+++..+-+.+..+...+++..|+.-+.++++.+|....+|+..|.+....
T Consensus 6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred hhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhH
Confidence 34455677778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005603 627 GRQSMPIARSFLMNALRLEPTNHDAWMNLGLISK 660 (688)
Q Consensus 627 g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 660 (688)
+++. +|...|+....+.|+++.+...+-.+-.
T Consensus 86 ~~~~--~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 86 GEFK--KALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHH--HHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 9998 9999999999999999988777766643
No 255
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.51 E-value=0.098 Score=51.49 Aligned_cols=137 Identities=12% Similarity=0.047 Sum_probs=91.8
Q ss_pred HhcCCHHHHHHHHHHhcCCC----CCCH----HHHHHHHHHHHHcC-CcHHHHHHHHHhHHH-HH--hHhhhcccchhhH
Q 005603 302 SVTGQFELLAEYVEQALPGI----YNRA----ERWYILALCYSAAG-QNEAALNLLKKDQVS-RG--VIQSTTSQKEHFL 369 (688)
Q Consensus 302 ~~~g~~~~A~~~~~~~l~~~----p~~~----~~~~~la~~~~~~g-~~~~A~~~~~~~l~~-~~--~~~~~~~~~~~~~ 369 (688)
.+.|+++.|..++.++-... |+.. ...|+.|......+ +++.|...++++... .. .......+...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 45788888998888875543 3322 56788888889999 999999999999711 10 0111122333466
Q ss_pred HHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 005603 370 AEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVA 446 (688)
Q Consensus 370 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 446 (688)
..++..++.+|...+.. ...++|...++.+....|+.+..+...-.+....++.+.+.+.+.+++...+
T Consensus 84 ~~iL~~La~~~l~~~~~--------~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTY--------ESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHcCCCh--------HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 77788888888776664 2235667777777666777777665544555557888888888888876644
No 256
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.02 Score=54.43 Aligned_cols=63 Identities=21% Similarity=0.041 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005603 414 DPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSL 477 (688)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 477 (688)
..+.-+.-+......|++.+|...+..++...|.+. .+...++.++...|+.+.|..++...-
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~-~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENS-EAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccc-hHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 334455566777888999999999999999999988 999999999999999999888877643
No 257
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.46 E-value=9e-05 Score=74.30 Aligned_cols=100 Identities=16% Similarity=0.157 Sum_probs=93.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005603 584 TTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEG 663 (688)
Q Consensus 584 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 663 (688)
.-+.-...-+.++.|+..|.++++++|+.+..+-+.+.++.+.+++. .|+..+.++++.+|....+|+..|.+....+
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~--~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFG--GALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhh--hHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 34555667789999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcccCCCCCC
Q 005603 664 SLQQAADYFQAAYELKLSAPVQ 685 (688)
Q Consensus 664 ~~~~A~~~~~~al~l~p~~~~~ 685 (688)
++.+|...|+....+.|++|.+
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDA 108 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHH
Confidence 9999999999999999998754
No 258
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.46 E-value=0.068 Score=58.19 Aligned_cols=289 Identities=16% Similarity=0.108 Sum_probs=189.1
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHc-----CCcHHHHHHHHHhHHH-HHhHhhhcccchhhHHHHHHHHHHHH
Q 005603 307 FELLAEYVEQALPGIYNRAERWYILALCYSAA-----GQNEAALNLLKKDQVS-RGVIQSTTSQKEHFLAEAYKFLGICY 380 (688)
Q Consensus 307 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~lg~~~ 380 (688)
...|..+++.+... .+..+.+.+|.||..- .+.+.|+..|+.+... .++.. .. .+.+.+.+|.+|
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~--~~-----~~~a~~~lg~~Y 298 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAAT--KG-----LPPAQYGLGRLY 298 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHh--hc-----CCccccHHHHHH
Confidence 45677777776543 5677788888888755 5888999999888610 00000 11 135677889988
Q ss_pred HhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhcCCCcHHHHHHHH
Q 005603 381 GNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQR---NVEAAFDYAIMYSDTVAGNSGRGWKLLA 457 (688)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~~la 457 (688)
......... +...|..+|.++.... ++.+.+.+|.++.... ++..|..+|..+.+.. +. .+.+.++
T Consensus 299 ~~g~~~~~~------d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~-~A~~~la 367 (552)
T KOG1550|consen 299 LQGLGVEKI------DYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HI-LAIYRLA 367 (552)
T ss_pred hcCCCCccc------cHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--Ch-HHHHHHH
Confidence 875422110 3388999999998765 6678888999888766 6789999999987653 44 8899999
Q ss_pred HHHHHc----CCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHhhHHhhhhccccccc
Q 005603 458 LILSAD----QRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQ-EQPKQAIGTYRILLAMIQAQRELHSKNFHKTKY 532 (688)
Q Consensus 458 ~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 532 (688)
.++..- .+...|..+++++.+..+ +.+.+.++.++..- ++++.+.-.+.......-.....
T Consensus 368 ~~y~~G~gv~r~~~~A~~~~k~aA~~g~----~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~---------- 433 (552)
T KOG1550|consen 368 LCYELGLGVERNLELAFAYYKKAAEKGN----PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQS---------- 433 (552)
T ss_pred HHHHhCCCcCCCHHHHHHHHHHHHHccC----hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhh----------
Confidence 988654 578999999999998774 33444444444333 77777776665555442211000
Q ss_pred cccccccCCcchHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHc----CCHHHHHHHHHH
Q 005603 533 ITSEAPSVKNLEIATWQDLATIYMK----LGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQ----SQYKEALVSFSI 604 (688)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~ 604 (688)
+...+......... ..+...+...+.++.. ..++.+...+|.+|..- .+++.|...|.+
T Consensus 434 -----------~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~ 500 (552)
T KOG1550|consen 434 -----------NAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYAR 500 (552)
T ss_pred -----------HHHHHHHhccccccccccccchhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHH
Confidence 11111111111111 1244556666665544 34677788888887654 368999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHh-CC--CChHHHHHHHHHHHHhCCC
Q 005603 605 SLAIEPDYIPSIISTAEILMKL-GR--QSMPIARSFLMNALRLEPT 647 (688)
Q Consensus 605 al~~~p~~~~~~~~la~~~~~~-g~--~~~~~A~~~~~~al~~~p~ 647 (688)
+.... ....+++|.++..- |- .. .|..+|.++.+.+..
T Consensus 501 a~~~~---~~~~~nlg~~~e~g~g~~~~~--~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 501 ASEQG---AQALFNLGYMHEHGEGIKVLH--LAKRYYDQASEEDSR 541 (552)
T ss_pred HHHhh---hHHHhhhhhHHhcCcCcchhH--HHHHHHHHHHhcCch
Confidence 88776 88899999888652 22 34 788888888876654
No 259
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.38 E-value=0.00029 Score=43.92 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 005603 547 TWQDLATIYMKLGSLPDAEICTEKAKSIEFY 577 (688)
Q Consensus 547 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 577 (688)
+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4455555555555555555555555555443
No 260
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.38 E-value=0.24 Score=59.92 Aligned_cols=134 Identities=19% Similarity=0.165 Sum_probs=104.3
Q ss_pred cchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC---------
Q 005603 542 NLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIE-PD--------- 611 (688)
Q Consensus 542 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~--------- 611 (688)
....+.|...|++-...|+++.|...+-+|.+.. -+.+....|..++..|+...|+..+++.+..+ |+
T Consensus 1667 ~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p 1744 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTP 1744 (2382)
T ss_pred chhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccc
Confidence 3368999999999999999999999999988876 57788999999999999999999999999653 22
Q ss_pred -------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH------------HcCCHHH---HH
Q 005603 612 -------YIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISK------------MEGSLQQ---AA 669 (688)
Q Consensus 612 -------~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~------------~~g~~~~---A~ 669 (688)
...+...++.-....+++...+-+++|..+.+..|.....++.+|..|. +.|++.. ++
T Consensus 1745 ~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~ 1824 (2382)
T KOG0890|consen 1745 QSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAI 1824 (2382)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHH
Confidence 1124555566666778877667888999999999988888888885542 3355554 55
Q ss_pred HHHHHHHc
Q 005603 670 DYFQAAYE 677 (688)
Q Consensus 670 ~~~~~al~ 677 (688)
-.|.+++.
T Consensus 1825 ~~~~~sl~ 1832 (2382)
T KOG0890|consen 1825 YFFGRALY 1832 (2382)
T ss_pred HHHHHHHH
Confidence 55566654
No 261
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.35 E-value=0.00046 Score=42.97 Aligned_cols=31 Identities=29% Similarity=0.417 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 005603 547 TWQDLATIYMKLGSLPDAEICTEKAKSIEFY 577 (688)
Q Consensus 547 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 577 (688)
+|..+|.++...|++++|+.+|++++.++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4445555555555555555555555555543
No 262
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.30 E-value=0.016 Score=61.41 Aligned_cols=121 Identities=16% Similarity=0.060 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC---cHHHHHHHHHHHHHcCCHHHHHHH
Q 005603 396 FQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGN---SGRGWKLLALILSADQRLKDAQSI 472 (688)
Q Consensus 396 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~la~~~~~~~~~~~A~~~ 472 (688)
..+.|.+++.......|+..-.++..|.++...|+.++|++.+++++.....- ..-.++.++.++..+.+|++|...
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 34889999999999999999999999999999999999999999988532221 125677899999999999999999
Q ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHHHHH
Q 005603 473 VDFSLDEAGSMDQLELLRLKAVLQIAQEQP-------KQAIGTYRILLAMIQ 517 (688)
Q Consensus 473 ~~~al~~~p~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~ 517 (688)
+.+..+.+. |......+..|-++...|+. ++|.+.+.++-....
T Consensus 328 f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 328 FLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 999999765 56777788899999999999 777777777666533
No 263
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.28 E-value=0.0005 Score=42.81 Aligned_cols=33 Identities=36% Similarity=0.607 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcccCCC
Q 005603 650 DAWMNLGLISKMEGSLQQAADYFQAAYELKLSA 682 (688)
Q Consensus 650 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 682 (688)
.+|+.+|.+|..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 578999999999999999999999999999853
No 264
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.25 E-value=0.46 Score=52.22 Aligned_cols=246 Identities=13% Similarity=0.005 Sum_probs=159.3
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCC--C-------HHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHh
Q 005603 289 WDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYN--R-------AERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQ 359 (688)
Q Consensus 289 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~--~-------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 359 (688)
..|......+.......++.+|..++.++...-+. . .+..-..|.+....|+.+.|.++.+.++ .
T Consensus 413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al------~ 486 (894)
T COG2909 413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLAL------V 486 (894)
T ss_pred hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH------H
Confidence 45667777788888899999998888877654333 1 2344556888999999999999999997 5
Q ss_pred hhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcC----CCCHH--HHHHHHHHHHHcCCHHH
Q 005603 360 STTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNE----REDPE--MMYYLGLEHAVQRNVEA 433 (688)
Q Consensus 360 ~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----p~~~~--~~~~la~~~~~~g~~~~ 433 (688)
..+.........+...+|.+..-.|++ ++|..+...+.+.. ..... +....+.++..+|+...
T Consensus 487 ~L~~~~~~~r~~~~sv~~~a~~~~G~~-----------~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~ 555 (894)
T COG2909 487 QLPEAAYRSRIVALSVLGEAAHIRGEL-----------TQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVAR 555 (894)
T ss_pred hcccccchhhhhhhhhhhHHHHHhchH-----------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHH
Confidence 556655566678888999999999999 99999988887663 22233 33455778888884333
Q ss_pred H--HHHHHHH----HhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----cCCC-CcHHHHHHHHHHHHHcCCh
Q 005603 434 A--FDYAIMY----SDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDE----AGSM-DQLELLRLKAVLQIAQEQP 502 (688)
Q Consensus 434 A--~~~~~~~----l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~-~~~~~~~~la~~~~~~g~~ 502 (688)
| ...+... +...|.+. -.....+.++...-+++.+..-....++. .|.. ...-.++.++.+....|++
T Consensus 556 a~~~~~~~~~~~q~l~q~~~~~-f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl 634 (894)
T COG2909 556 AEQEKAFNLIREQHLEQKPRHE-FLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDL 634 (894)
T ss_pred HHHHHHHHHHHHHHhhhcccch-hHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCH
Confidence 3 3333222 22334433 33344444444444466666665555543 2211 1122335889999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchH--HHHHHHHHHHHHcCChhHHHHHHHHHH
Q 005603 503 KQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEI--ATWQDLATIYMKLGSLPDAEICTEKAK 572 (688)
Q Consensus 503 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al 572 (688)
++|...+.+......+. . .+.+. .+...........|+..+|.....+..
T Consensus 635 ~~A~~~l~~~~~l~~~~-------------------~-~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 635 DKALAQLDELERLLLNG-------------------Q-YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred HHHHHHHHHHHHHhcCC-------------------C-CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence 99999999888775441 0 11122 222223334456889988888887743
No 265
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.25 E-value=0.49 Score=52.47 Aligned_cols=355 Identities=14% Similarity=0.026 Sum_probs=195.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhcCCCCC---CH-HHHHHH--HHHHHHcCCcHHHHHHHHHhHHHHHhHhhhc-ccc
Q 005603 293 IMDHLTYALSVTGQFELLAEYVEQALPGIYN---RA-ERWYIL--ALCYSAAGQNEAALNLLKKDQVSRGVIQSTT-SQK 365 (688)
Q Consensus 293 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~---~~-~~~~~l--a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~-~~~ 365 (688)
+-..++.++.+.+... |...+++.+...-. .. ...+.+ ...+...+++..|++.++.+. .... ..+
T Consensus 102 ~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~------~~a~~~~d 174 (608)
T PF10345_consen 102 CQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIA------QLANQRGD 174 (608)
T ss_pred HHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHH------HHhhhcCC
Confidence 3456688888888777 99999888765433 22 222222 233333489999999999986 2111 123
Q ss_pred hhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHc------CC----CCHHHHHHHHH--HHHHcCCHHH
Q 005603 366 EHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLN------ER----EDPEMMYYLGL--EHAVQRNVEA 433 (688)
Q Consensus 366 ~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p----~~~~~~~~la~--~~~~~g~~~~ 433 (688)
......+....+.+....+.. +++++.+.++... +| ....+|..+-. ++...|+++.
T Consensus 175 ~~~~v~~~l~~~~l~l~~~~~-----------~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~ 243 (608)
T PF10345_consen 175 PAVFVLASLSEALLHLRRGSP-----------DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKN 243 (608)
T ss_pred HHHHHHHHHHHHHHHhcCCCc-----------hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHH
Confidence 333344445556666666656 6677777666321 21 12334444333 4466777766
Q ss_pred HHHHHHHH---Hhh---cC---C---C-----------------c------------HHHHHHHHHHHHHcCCHHHHHHH
Q 005603 434 AFDYAIMY---SDT---VA---G---N-----------------S------------GRGWKLLALILSADQRLKDAQSI 472 (688)
Q Consensus 434 A~~~~~~~---l~~---~p---~---~-----------------~------------~~~~~~la~~~~~~~~~~~A~~~ 472 (688)
+...+++. ++. .+ . + + +-++..-|......+..++|.++
T Consensus 244 ~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~ 323 (608)
T PF10345_consen 244 SKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKF 323 (608)
T ss_pred HHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHH
Confidence 66555443 221 11 0 0 1 01233335555667777788888
Q ss_pred HHHHHhhcCCCC------------------------cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccc
Q 005603 473 VDFSLDEAGSMD------------------------QLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFH 528 (688)
Q Consensus 473 ~~~al~~~p~~~------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 528 (688)
++++++.-.+.. ...+.+..+.+....+++..|......+.......+..
T Consensus 324 ~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~------ 397 (608)
T PF10345_consen 324 LEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSK------ 397 (608)
T ss_pred HHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccc------
Confidence 888774321100 11234456667788899999999998888765432110
Q ss_pred cccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHH--------HHHhcCCCCh---hHHHHHHHHHHHcCCHHH
Q 005603 529 KTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTE--------KAKSIEFYSP---GSWHTTGMLFEAQSQYKE 597 (688)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--------~al~~~p~~~---~~~~~lg~~~~~~g~~~~ 597 (688)
-.....+.+++..|..+...|+.+.|...|. .+....+.+. -+..++..++...+.-..
T Consensus 398 ----------~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~ 467 (608)
T PF10345_consen 398 ----------LYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDD 467 (608)
T ss_pred ----------hhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccch
Confidence 0012257889999999999999999999998 3333333322 123455566665554332
Q ss_pred ----HHHHHHHHHhcCCCCHHHHHHH-----HHHHHHhCCCChHHHHHHHHHHHHhC-C--CC----HHHHHHHHHHHHH
Q 005603 598 ----ALVSFSISLAIEPDYIPSIIST-----AEILMKLGRQSMPIARSFLMNALRLE-P--TN----HDAWMNLGLISKM 661 (688)
Q Consensus 598 ----A~~~~~~al~~~p~~~~~~~~l-----a~~~~~~g~~~~~~A~~~~~~al~~~-p--~~----~~~~~~lg~~~~~ 661 (688)
+-..++..-....+.+..++.. -.++.........++...+..+++.. . ++ .-++..++..++
T Consensus 468 ~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf- 546 (608)
T PF10345_consen 468 SESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF- 546 (608)
T ss_pred hhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-
Confidence 3333332211111122222222 22222222221236778887777754 1 11 224555666666
Q ss_pred cCCHHHHHHHHHHHHcccCCC
Q 005603 662 EGSLQQAADYFQAAYELKLSA 682 (688)
Q Consensus 662 ~g~~~~A~~~~~~al~l~p~~ 682 (688)
.|+..+......++..+....
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~ 567 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKS 567 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhh
Confidence 788888777777776654433
No 266
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.18 E-value=0.66 Score=56.48 Aligned_cols=346 Identities=8% Similarity=0.043 Sum_probs=201.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcCCCCC--C--HHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHH
Q 005603 296 HLTYALSVTGQFELLAEYVEQALPGIYN--R--AERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAE 371 (688)
Q Consensus 296 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~--~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 371 (688)
.++.+-++++.|.+|+-++|+- ...+. + ...++.+-.+|...++++.-..+..... ..+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~----------a~~------ 1450 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF----------ADP------ 1450 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh----------cCc------
Confidence 5788888999999999999984 22222 1 1233444458888888887665555321 001
Q ss_pred HHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHH
Q 005603 372 AYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGR 451 (688)
Q Consensus 372 ~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 451 (688)
.....-......|++ +.|..+|+++++.+|+....+...-......|.++..+...+-.....++.. .
T Consensus 1451 sl~~qil~~e~~g~~-----------~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~-~ 1518 (2382)
T KOG0890|consen 1451 SLYQQILEHEASGNW-----------ADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEV-D 1518 (2382)
T ss_pred cHHHHHHHHHhhccH-----------HHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHH-H
Confidence 111222334445666 9999999999999999887777777777888888888887776666555554 5
Q ss_pred HHHHHHH-HHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCCh----------------------------
Q 005603 452 GWKLLAL-ILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQP---------------------------- 502 (688)
Q Consensus 452 ~~~~la~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~---------------------------- 502 (688)
-|..++. +....++++.-..... +.+. +...+.. +|.+.....+-
T Consensus 1519 ~~~s~~~eaaW~l~qwD~~e~~l~---~~n~--e~w~~~~-~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~S 1592 (2382)
T KOG0890|consen 1519 ELNSLGVEAAWRLSQWDLLESYLS---DRNI--EYWSVES-IGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGS 1592 (2382)
T ss_pred HHHHHHHHHHhhhcchhhhhhhhh---cccc--cchhHHH-HHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccch
Confidence 5555543 3466677766555433 1111 1111111 33333322221
Q ss_pred -HHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHh---cC---
Q 005603 503 -KQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKS---IE--- 575 (688)
Q Consensus 503 -~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~--- 575 (688)
..+.++.-++.....-... ... ...-...+..... ..-|.+....-....+..+-+-.+++++- .+
T Consensus 1593 y~~~Y~~~~kLH~l~el~~~-~~~---l~~~s~~~~s~~~---sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~ 1665 (2382)
T KOG0890|consen 1593 YVRSYEILMKLHLLLELENS-IEE---LKKVSYDEDSANN---SDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNL 1665 (2382)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHH---hhccCcccccccc---chhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccc
Confidence 1111111111111000000 000 0000011111111 23333333222222224444444555432 22
Q ss_pred -CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC-CC------
Q 005603 576 -FYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLE-PT------ 647 (688)
Q Consensus 576 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~-p~------ 647 (688)
...+..|...|.+....|+++.|-...-+|.+.. -+.+....|..+...|+.. .|+..+++.++.+ |+
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~--~Al~~Lq~~l~~~~~~~~~~~~ 1741 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDEL--NALSVLQEILSKNFPDLHTPYT 1741 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHH--HHHHHHHHHHHhhcccccCCcc
Confidence 3456789999999999999999999999988776 5678999999999999999 9999999999753 22
Q ss_pred ----C------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHcccCCCCCCCC
Q 005603 648 ----N------HDAWMNLGLISKMEGSL--QQAADYFQAAYELKLSAPVQSF 687 (688)
Q Consensus 648 ----~------~~~~~~lg~~~~~~g~~--~~A~~~~~~al~l~p~~~~~~f 687 (688)
. ..+...++......|++ .+-+.+|+.+.++.|....-+|
T Consensus 1742 ~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy 1793 (2382)
T KOG0890|consen 1742 DTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHY 1793 (2382)
T ss_pred ccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCcee
Confidence 1 12344455555666663 4556899999999996655544
No 267
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.027 Score=52.17 Aligned_cols=190 Identities=12% Similarity=0.129 Sum_probs=143.8
Q ss_pred CCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHc-CChHHHHH
Q 005603 429 RNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQ-EQPKQAIG 507 (688)
Q Consensus 429 g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~-g~~~~A~~ 507 (688)
.+|.++..+|+.++..+..+ ..|+++...++..+| .+..+|...-.++..+ .+..+-++
T Consensus 40 e~fr~~m~YfRAI~~~~E~S------------------~RAl~LT~d~i~lNp--AnYTVW~yRr~iL~~l~~dL~~El~ 99 (318)
T KOG0530|consen 40 EDFRDVMDYFRAIIAKNEKS------------------PRALQLTEDAIRLNP--ANYTVWQYRRVILRHLMSDLNKELE 99 (318)
T ss_pred hhHHHHHHHHHHHHhccccC------------------HHHHHHHHHHHHhCc--ccchHHHHHHHHHHHhHHHHHHHHH
Confidence 45666666666665555444 467777888899999 6777776666665544 45666777
Q ss_pred HHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChh-HHHHHHHHHHhcCCCChhHHHHHH
Q 005603 508 TYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLP-DAEICTEKAKSIEFYSPGSWHTTG 586 (688)
Q Consensus 508 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~lg 586 (688)
.+...+...|. +-.+|...-.+....|++. .-+.+.+.++..+..+..+|...-
T Consensus 100 ~l~eI~e~npK-------------------------NYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRq 154 (318)
T KOG0530|consen 100 YLDEIIEDNPK-------------------------NYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQ 154 (318)
T ss_pred HHHHHHHhCcc-------------------------chhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHH
Confidence 77777777555 7889998888888899888 888999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-CCCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Q 005603 587 MLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKL-GRQS---MPIARSFLMNALRLEPTNHDAWMNLGLISKM- 661 (688)
Q Consensus 587 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~- 661 (688)
.+...-+.++.-+.+..+.++.+-.+-.+|...--+.... |-.+ ++.-+.+..+.+...|+|..+|..|.-++..
T Consensus 155 W~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d 234 (318)
T KOG0530|consen 155 WVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELD 234 (318)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhc
Confidence 9999999999999999999998777666766543333332 2222 3355677888899999999999999888875
Q ss_pred cC
Q 005603 662 EG 663 (688)
Q Consensus 662 ~g 663 (688)
.|
T Consensus 235 ~g 236 (318)
T KOG0530|consen 235 SG 236 (318)
T ss_pred cC
Confidence 44
No 268
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.10 E-value=0.061 Score=47.85 Aligned_cols=96 Identities=17% Similarity=0.079 Sum_probs=49.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccc
Q 005603 454 KLLALILSADQRLKDAQSIVDFSLDEAGSM-DQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKY 532 (688)
Q Consensus 454 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 532 (688)
..++..+...+++++|+..++.++....+. -...+-.+++.+...+|++++|+..+...-..
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~----------------- 155 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE----------------- 155 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-----------------
Confidence 445555666666666666666666433210 11223345566666666666665555433221
Q ss_pred cccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 005603 533 ITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIE 575 (688)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 575 (688)
.-.+......|+++...|+-++|...|.+++..+
T Consensus 156 ---------~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 156 ---------SWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred ---------cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 1122333445556666666666666666655554
No 269
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.03 E-value=0.085 Score=53.05 Aligned_cols=165 Identities=12% Similarity=-0.034 Sum_probs=121.5
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 005603 402 ESLNCAFLNEREDPEMMYYLGLEHAVQRN------------VEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDA 469 (688)
Q Consensus 402 ~~~~~al~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A 469 (688)
.-|++.++.+|.+.++|..+....-..-. .+.-+.+++++++.+|++. ..+..+-....+..+.++.
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~-~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSE-RLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhCCHHHH
Confidence 45778889999999999998876544322 4567889999999999998 8888888888888899999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHH---cCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHH
Q 005603 470 QSIVDFSLDEAGSMDQLELLRLKAVLQIA---QEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIA 546 (688)
Q Consensus 470 ~~~~~~al~~~p~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (688)
.+-+++++..+| ....+|......... .-.++.....|.+++............ .-............
T Consensus 85 ~~~we~~l~~~~--~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~-------~~~~~~~~e~~~l~ 155 (321)
T PF08424_consen 85 AKKWEELLFKNP--GSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMT-------SHPDLPELEEFMLY 155 (321)
T ss_pred HHHHHHHHHHCC--CChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccc-------cccchhhHHHHHHH
Confidence 999999999999 777777665554443 335788999999998876553221100 00000011112356
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 005603 547 TWQDLATIYMKLGSLPDAEICTEKAKSIEF 576 (688)
Q Consensus 547 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 576 (688)
++..+.......|..+.|+..++-.++.+-
T Consensus 156 v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 156 VFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 677778888899999999999999999764
No 270
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.03 E-value=0.00031 Score=67.22 Aligned_cols=122 Identities=15% Similarity=0.063 Sum_probs=94.2
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCh
Q 005603 552 ATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSM 631 (688)
Q Consensus 552 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 631 (688)
+.-.+..|.+++|+..|..++.++|.....+...+.++..+++...|+..|..++.++|+....+-..+.....+|++.
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e- 199 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWE- 199 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchH-
Confidence 4445567889999999999999999999999999999999999999999999999999999888888899999999998
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005603 632 PIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAY 676 (688)
Q Consensus 632 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 676 (688)
+|...+..+.+++-+. .+-..+-.+.-..+..++-..-+++..
T Consensus 200 -~aa~dl~~a~kld~dE-~~~a~lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 200 -EAAHDLALACKLDYDE-ANSATLKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred -HHHHHHHHHHhccccH-HHHHHHHHhccchhhhhhchhHHHHHH
Confidence 9999999998876432 233334444444444444444444443
No 271
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.01 E-value=0.03 Score=49.12 Aligned_cols=66 Identities=18% Similarity=0.116 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q 005603 451 RGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQA 518 (688)
Q Consensus 451 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 518 (688)
.+...++..+...|++++|+..+++++..+| .+-.++..+..++...|+..+|+..|++......+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP--~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~ 128 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDP--YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLRE 128 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST--T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 4566677888899999999999999999999 88999999999999999999999999998776443
No 272
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.00 E-value=0.019 Score=50.38 Aligned_cols=112 Identities=17% Similarity=0.174 Sum_probs=64.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccc-cccccCCcchHHHHHHHHHHHHHcCChhHHHHHHH
Q 005603 491 LKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYIT-SEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTE 569 (688)
Q Consensus 491 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 569 (688)
..+......|+.+.++..+++++.+.....-.-... ...+ ............+...++..+...|++++|+..++
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 11 REARAAARAGDPEEAIELLEEALALYRGDFLPDLDD----EEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----STTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----cHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 334455566777777777777777654310000000 0000 00000001134556667777777888888888888
Q ss_pred HHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005603 570 KAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISL 606 (688)
Q Consensus 570 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 606 (688)
+++..+|.+..+|..+..++...|+..+|+..|++..
T Consensus 87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 8888888888888888888888888888888877664
No 273
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.93 E-value=0.018 Score=46.14 Aligned_cols=106 Identities=13% Similarity=0.098 Sum_probs=83.0
Q ss_pred HHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHc
Q 005603 331 LALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLN 410 (688)
Q Consensus 331 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 410 (688)
+|..++..|++-+|+++.+..+ ...+...+. ...+...|.++..++........+...+-.++++|.++..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i------~~h~~~~~~--~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L 73 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLI------SRHGEDESS--WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL 73 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHH------HHccCCCch--HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc
Confidence 4678899999999999999997 212222211 36777888888888877666666777788899999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 005603 411 EREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDT 444 (688)
Q Consensus 411 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 444 (688)
.|..+..++.+|.-+-....|+++..-.++++..
T Consensus 74 sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 74 SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 9988888888888877777888888888887765
No 274
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.0057 Score=58.52 Aligned_cols=101 Identities=17% Similarity=0.207 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 005603 544 EIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYS----PGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIIST 619 (688)
Q Consensus 544 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 619 (688)
.+..+-.-|+-|++..+|..|+.+|.+.++....+ ...|.+.+-+....|+|..|+..+.+++.++|.+..+++.-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 46667788999999999999999999999976554 45688999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCC
Q 005603 620 AEILMKLGRQSMPIARSFLMNALRLEP 646 (688)
Q Consensus 620 a~~~~~~g~~~~~~A~~~~~~al~~~p 646 (688)
+.++..+.++. +|..+.+..++++.
T Consensus 160 Akc~~eLe~~~--~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 160 AKCLLELERFA--EAVNWCEEGLQIDD 184 (390)
T ss_pred hHHHHHHHHHH--HHHHHHhhhhhhhH
Confidence 99999999987 88888777766543
No 275
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.82 E-value=0.0011 Score=41.82 Aligned_cols=30 Identities=33% Similarity=0.556 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcccC
Q 005603 651 AWMNLGLISKMEGSLQQAADYFQAAYELKL 680 (688)
Q Consensus 651 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 680 (688)
+|.+||.+|...|++++|+++|++++.+.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 477889999999999999999999766544
No 276
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.81 E-value=0.11 Score=46.38 Aligned_cols=101 Identities=16% Similarity=-0.030 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHH
Q 005603 327 RWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNC 406 (688)
Q Consensus 327 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 406 (688)
.-..+|..+...|++++|+..++.++ ....+..+...+-..|+.+...++.+ ++|+..+..
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l--------~~t~De~lk~l~~lRLArvq~q~~k~-----------D~AL~~L~t 151 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQAL--------AQTKDENLKALAALRLARVQLQQKKA-----------DAALKTLDT 151 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHH--------ccchhHHHHHHHHHHHHHHHHHhhhH-----------HHHHHHHhc
Confidence 34556777777777777777777775 23344455566667777777777777 777776654
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 005603 407 AFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAG 447 (688)
Q Consensus 407 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 447 (688)
....+ -.+......|.++...|+-++|...|+++++..+.
T Consensus 152 ~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 152 IKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred ccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 32110 11223444677777777777777777777766543
No 277
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.016 Score=55.61 Aligned_cols=101 Identities=19% Similarity=0.093 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 005603 369 LAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNERED----PEMMYYLGLEHAVQRNVEAAFDYAIMYSDT 444 (688)
Q Consensus 369 ~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 444 (688)
.+..+-.-|.-|....++ ..|+.+|.+.++..-.+ ...+.+.+-+....|+|..|+.-+.+++..
T Consensus 80 ~Aen~KeeGN~~fK~Kry-----------k~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~ 148 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRY-----------KDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL 148 (390)
T ss_pred HHHHHHHHhHHHHHhhhH-----------HHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466677778888888888 99999999999766544 345778999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 005603 445 VAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAG 481 (688)
Q Consensus 445 ~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 481 (688)
+|.+. .+++.-+.++..+.++++|..+++..+..+.
T Consensus 149 ~P~h~-Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 149 KPTHL-KAYIRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred Ccchh-hhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 99998 9999999999999999999999999887664
No 278
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.81 E-value=0.22 Score=46.50 Aligned_cols=198 Identities=8% Similarity=0.015 Sum_probs=122.1
Q ss_pred cCCHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHHcCCcHHHHHHHHHhH-HHHHhHhhhcccchhhHHHHHHHHHH
Q 005603 304 TGQFELLAEYVEQALPGIYNRA----ERWYILALCYSAAGQNEAALNLLKKDQ-VSRGVIQSTTSQKEHFLAEAYKFLGI 378 (688)
Q Consensus 304 ~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~lg~ 378 (688)
..+.++|+..|++++...+... .++-.+..++++.|+|++-...|++++ |.+.++...-... .....+-.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEK-----sIN~IlDy 114 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEK-----SINSILDY 114 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHH-----HHHHHHHH
Confidence 4478999999999999887654 456678889999999999999999988 4443333111100 00111111
Q ss_pred HHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhcCCC------
Q 005603 379 CYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMM----YYLGLEHAVQRNVEAAFDYAIMYSDTVAGN------ 448 (688)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------ 448 (688)
+ ....+. .--...++..+..++.+ .+...| ..+|.+|+..+.|.+-.+.+++.-......
T Consensus 115 i-StS~~m----~LLQ~FYeTTL~ALkdA-----KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~ 184 (440)
T KOG1464|consen 115 I-STSKNM----DLLQEFYETTLDALKDA-----KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQ 184 (440)
T ss_pred H-hhhhhh----HHHHHHHHHHHHHHHhh-----hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhh
Confidence 0 011111 00011224444444443 233334 458999999999888877777665432111
Q ss_pred -----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHH----HHHHHHHHHcCChHHHHHHHHHHHHHH
Q 005603 449 -----SGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELL----RLKAVLQIAQEQPKQAIGTYRILLAMI 516 (688)
Q Consensus 449 -----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~ 516 (688)
..+++..-..+|..+++-.+-..+|++++.......++.+. -.-|..+.+.|++++|..-|-.+++..
T Consensus 185 kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 185 KKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred hccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 12455556678888888888888999998765422233222 223567888999999998888887753
No 279
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.80 E-value=0.31 Score=49.61 Aligned_cols=166 Identities=13% Similarity=-0.048 Sum_probs=104.4
Q ss_pred HhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhh-h---ccccccccccccccCCcchHHHHHHHH
Q 005603 477 LDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHS-K---NFHKTKYITSEAPSVKNLEIATWQDLA 552 (688)
Q Consensus 477 l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~la 552 (688)
+..+| .+.+.+..++.++..+|+...|.+.+++++-.......... . ....+...+.-....+.....+.....
T Consensus 33 l~~~P--yHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 33 LQKNP--YHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 34566 67777777777777777777777777777654332111111 0 000011111111112222345566777
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCC-ChhH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHH
Q 005603 553 TIYMKLGSLPDAEICTEKAKSIEFY-SPGS-WHTTGMLFEAQSQYKEALVSFSISLAIEP-----DYIPSIISTAEILMK 625 (688)
Q Consensus 553 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~-~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~ 625 (688)
....+.|-+..|.++.+-.+.++|. ++-. .+.+-....+.++++--+..++....... .-+..-+..+.++..
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~ 190 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFR 190 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHH
Confidence 8888999999999999999999998 6654 44444555677888877777776554211 123466778888888
Q ss_pred hCCC---------------ChHHHHHHHHHHHHhCC
Q 005603 626 LGRQ---------------SMPIARSFLMNALRLEP 646 (688)
Q Consensus 626 ~g~~---------------~~~~A~~~~~~al~~~p 646 (688)
.++. + +|...+.+|+...|
T Consensus 191 l~~~~~~~~~~~~~~~~~~~--~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 191 LEKEESSQSSAQSGRSENSE--SADEALQKAILRFP 224 (360)
T ss_pred hcCccccccccccccccchh--HHHHHHHHHHHHhH
Confidence 8887 6 78888888876544
No 280
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.75 E-value=0.046 Score=55.57 Aligned_cols=171 Identities=9% Similarity=-0.000 Sum_probs=109.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHH-hHhhhcccchhhHH-HHHHHHHHHHHhhhhhccchHHhhHH
Q 005603 319 PGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRG-VIQSTTSQKEHFLA-EAYKFLGICYGNVARKSISDTERVFF 396 (688)
Q Consensus 319 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~-~~~~~lg~~~~~~~~~~~~~~~~~~~ 396 (688)
..+|-..+++..++.++..+|+...|.++++++++.-. +.. +.. .. ......|.+...-...
T Consensus 34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~-----~~F-~~~~~~~~~g~~rL~~~~~---------- 97 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFH-----PSF-SPFRSNLTSGNCRLDYRRP---------- 97 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH-----HHh-hhhhcccccCccccCCccc----------
Confidence 45788888888888999999998888888888872210 000 000 00 0000001111111110
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005603 397 QKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAG-NSGRGWKLLALILSADQRLKDAQSIVDF 475 (688)
Q Consensus 397 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~la~~~~~~~~~~~A~~~~~~ 475 (688)
.+..-..+++.....+.+.|-+..|+++.+-.+.++|. ++..+.+.+-....+.++++--+++++.
T Consensus 98 -------------eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~ 164 (360)
T PF04910_consen 98 -------------ENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSES 164 (360)
T ss_pred -------------cchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHh
Confidence 01111345666777888899999999999999999998 7745555555666777888877777776
Q ss_pred HHhhcC-CC--CcHHHHHHHHHHHHHcCCh---------------HHHHHHHHHHHHHHHh
Q 005603 476 SLDEAG-SM--DQLELLRLKAVLQIAQEQP---------------KQAIGTYRILLAMIQA 518 (688)
Q Consensus 476 al~~~p-~~--~~~~~~~~la~~~~~~g~~---------------~~A~~~~~~al~~~~~ 518 (688)
...... .+ .-+..-+..+.++...++. +.|...+.+++...|.
T Consensus 165 ~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 165 PLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 554211 00 1234667778888888888 8999999999999776
No 281
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.74 E-value=0.2 Score=46.71 Aligned_cols=220 Identities=14% Similarity=0.083 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-----CCCcHHHHHHHHHHHHHcCCHH
Q 005603 397 QKEALESLNCAFLNERED----PEMMYYLGLEHAVQRNVEAAFDYAIMYSDTV-----AGNSGRGWKLLALILSADQRLK 467 (688)
Q Consensus 397 ~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~~~la~~~~~~~~~~ 467 (688)
+++|+..|++.+++.+.. ..++-.+..++++++++++-...|.+.+..- .+..-.....+-..-....+.+
T Consensus 43 p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~ 122 (440)
T KOG1464|consen 43 PKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMD 122 (440)
T ss_pred HHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhH
Confidence 399999999999998865 3567778889999999999999998887431 1111022222222223334444
Q ss_pred HHHHHHHHHHhhcCCCCcHHHH----HHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcc
Q 005603 468 DAQSIVDFSLDEAGSMDQLELL----RLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNL 543 (688)
Q Consensus 468 ~A~~~~~~al~~~p~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (688)
--..+|+..++.-.+..+..+| ..+|.+++..|.+.+-.++++++-..+......- -......
T Consensus 123 LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGed-------------D~kKGtQ 189 (440)
T KOG1464|consen 123 LLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGED-------------DQKKGTQ 189 (440)
T ss_pred HHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCch-------------hhhccch
Confidence 4444555444321111222233 4689999999999888888877766544310000 0011112
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhH------HHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCC
Q 005603 544 EIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGS------WHTTGMLFEAQSQYKEALVSFSISLAIE-----PDY 612 (688)
Q Consensus 544 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~ 612 (688)
-.++|..-..+|..+.+...-...|++++.+...-|.. .-.=|..+.+.|+|++|-..|-.|++.. |..
T Consensus 190 LLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRR 269 (440)
T KOG1464|consen 190 LLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRR 269 (440)
T ss_pred hhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcch
Confidence 35666667788888888888888999998876543322 2233566788999999999888888753 333
Q ss_pred HHH--HHHHHHHHHHhCCC
Q 005603 613 IPS--IISTAEILMKLGRQ 629 (688)
Q Consensus 613 ~~~--~~~la~~~~~~g~~ 629 (688)
..+ |.-++..+++.|-.
T Consensus 270 ttCLKYLVLANMLmkS~iN 288 (440)
T KOG1464|consen 270 TTCLKYLVLANMLMKSGIN 288 (440)
T ss_pred hHHHHHHHHHHHHHHcCCC
Confidence 333 55677777776543
No 282
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.73 E-value=0.0014 Score=62.86 Aligned_cols=86 Identities=17% Similarity=0.291 Sum_probs=49.1
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005603 591 AQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAAD 670 (688)
Q Consensus 591 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 670 (688)
..|.+++|++.|..++.++|.....+...+.++.++++.. .|+..+..++.++|+....+-..|.....+|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~--~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPN--AAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCc--hhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 3445555555555555555555555555555555555555 55555555555555555555555555555555555555
Q ss_pred HHHHHHcc
Q 005603 671 YFQAAYEL 678 (688)
Q Consensus 671 ~~~~al~l 678 (688)
.+..+.++
T Consensus 204 dl~~a~kl 211 (377)
T KOG1308|consen 204 DLALACKL 211 (377)
T ss_pred HHHHHHhc
Confidence 55555544
No 283
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.72 E-value=0.89 Score=46.68 Aligned_cols=107 Identities=14% Similarity=0.050 Sum_probs=82.7
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 005603 576 FYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNL 655 (688)
Q Consensus 576 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~l 655 (688)
|+....-..+-..+.+.|-+.+|...|.+...+-|-....+..+..+-..+.-.++.-++.+|+.++.....+++.|...
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y 536 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDY 536 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 44444455566677788889999999999988888777766666555444433334489999999999888999999998
Q ss_pred HHHHHHcCCHHHHHHHHHHHHc-ccCCC
Q 005603 656 GLISKMEGSLQQAADYFQAAYE-LKLSA 682 (688)
Q Consensus 656 g~~~~~~g~~~~A~~~~~~al~-l~p~~ 682 (688)
-..-..+|..+.+-..|.+|+. ++|..
T Consensus 537 ~~~e~~~g~~en~~~~~~ra~ktl~~~~ 564 (568)
T KOG2396|consen 537 MKEELPLGRPENCGQIYWRAMKTLQGES 564 (568)
T ss_pred HHhhccCCCcccccHHHHHHHHhhChhh
Confidence 8888899999999999999987 45543
No 284
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.68 E-value=0.0026 Score=39.10 Aligned_cols=33 Identities=24% Similarity=0.251 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcccCCC
Q 005603 650 DAWMNLGLISKMEGSLQQAADYFQAAYELKLSA 682 (688)
Q Consensus 650 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 682 (688)
++++.+|.++...|++++|+..|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 367888888888888888888888888888874
No 285
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.67 E-value=0.0029 Score=39.27 Aligned_cols=30 Identities=30% Similarity=0.399 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 005603 547 TWQDLATIYMKLGSLPDAEICTEKAKSIEF 576 (688)
Q Consensus 547 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 576 (688)
+|..+|.+|..+|++++|+.+|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 444555555555555555555555555544
No 286
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.64 E-value=1.2 Score=47.38 Aligned_cols=80 Identities=16% Similarity=0.081 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 005603 415 PEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAV 494 (688)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~ 494 (688)
.+++..+|..+.....|++|.++|.+.- -.-.+..+++....|++-+.+... -| ++..++-.+|.
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~---------~~e~~~ecly~le~f~~LE~la~~----Lp--e~s~llp~~a~ 860 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCG---------DTENQIECLYRLELFGELEVLART----LP--EDSELLPVMAD 860 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc---------chHhHHHHHHHHHhhhhHHHHHHh----cC--cccchHHHHHH
Confidence 3466667777777777777777665541 122344555555555543333222 23 44445555666
Q ss_pred HHHHcCChHHHHHHH
Q 005603 495 LQIAQEQPKQAIGTY 509 (688)
Q Consensus 495 ~~~~~g~~~~A~~~~ 509 (688)
.+...|.-++|++.|
T Consensus 861 mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 861 MFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHhhchHHHHHHHH
Confidence 666666666665554
No 287
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.53 E-value=0.095 Score=52.71 Aligned_cols=146 Identities=14% Similarity=0.025 Sum_probs=112.5
Q ss_pred ccCCcchHHHHHHHHHHHHHcCC------------hhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005603 538 PSVKNLEIATWQDLATIYMKLGS------------LPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSIS 605 (688)
Q Consensus 538 ~~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 605 (688)
+..+|.+..+|..+....-..-. .+.-+..|++|++.+|++...+..+-.......+.++..+.++++
T Consensus 12 v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~ 91 (321)
T PF08424_consen 12 VRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEEL 91 (321)
T ss_pred HHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34466689999888876655432 456788999999999999999888888888888999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHhCC----C-------C-------HHHHHHHHHHHHHcCCHH
Q 005603 606 LAIEPDYIPSIISTAEILMK-LGRQSMPIARSFLMNALRLEP----T-------N-------HDAWMNLGLISKMEGSLQ 666 (688)
Q Consensus 606 l~~~p~~~~~~~~la~~~~~-~g~~~~~~A~~~~~~al~~~p----~-------~-------~~~~~~lg~~~~~~g~~~ 666 (688)
+..+|++...|..+-..... ...+.++.....|.++++.-. . . ..+...+.......|-.+
T Consensus 92 l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E 171 (321)
T PF08424_consen 92 LFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTE 171 (321)
T ss_pred HHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchH
Confidence 99999999988776554443 456666688888888876411 0 0 134556777788999999
Q ss_pred HHHHHHHHHHcccCCCC
Q 005603 667 QAADYFQAAYELKLSAP 683 (688)
Q Consensus 667 ~A~~~~~~al~l~p~~~ 683 (688)
.|+..++-.++++=..|
T Consensus 172 ~Ava~~Qa~lE~n~~~P 188 (321)
T PF08424_consen 172 RAVALWQALLEFNFFRP 188 (321)
T ss_pred HHHHHHHHHHHHHcCCc
Confidence 99999999999765444
No 288
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.47 E-value=0.58 Score=49.69 Aligned_cols=184 Identities=8% Similarity=-0.071 Sum_probs=109.9
Q ss_pred hhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHH----------HHHHHHHHHc
Q 005603 359 QSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMM----------YYLGLEHAVQ 428 (688)
Q Consensus 359 ~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~----------~~la~~~~~~ 428 (688)
+..+.+|. ++.|..++......-.. +.|...|-+.-... . .... ...+.+-..-
T Consensus 684 qfiEdnPH---prLWrllAe~Al~Kl~l-----------~tAE~AFVrc~dY~-G-ik~vkrl~~i~s~~~q~aei~~~~ 747 (1189)
T KOG2041|consen 684 QFIEDNPH---PRLWRLLAEYALFKLAL-----------DTAEHAFVRCGDYA-G-IKLVKRLRTIHSKEQQRAEISAFY 747 (1189)
T ss_pred HHHhcCCc---hHHHHHHHHHHHHHHhh-----------hhHhhhhhhhcccc-c-hhHHHHhhhhhhHHHHhHhHhhhh
Confidence 33444454 48898888877766666 66766665543111 0 1111 2334455556
Q ss_pred CCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 005603 429 RNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGT 508 (688)
Q Consensus 429 g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~ 508 (688)
|++++|.+.|-.+ +..+ .-..++...|+|-...++++..-.-..+.....++..+|..+..+..+++|.++
T Consensus 748 g~feeaek~yld~---drrD------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDA---DRRD------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred cchhHhhhhhhcc---chhh------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888777543 2111 223345666777777766665332222113456788899999999999999988
Q ss_pred HHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHH
Q 005603 509 YRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGML 588 (688)
Q Consensus 509 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 588 (688)
|.+.-.. -++..++....+|++-+.+ ...-|++...+-.+|..
T Consensus 819 Y~~~~~~---------------------------------e~~~ecly~le~f~~LE~l----a~~Lpe~s~llp~~a~m 861 (1189)
T KOG2041|consen 819 YSYCGDT---------------------------------ENQIECLYRLELFGELEVL----ARTLPEDSELLPVMADM 861 (1189)
T ss_pred HHhccch---------------------------------HhHHHHHHHHHhhhhHHHH----HHhcCcccchHHHHHHH
Confidence 8765332 2344555555565554333 23346666667777777
Q ss_pred HHHcCCHHHHHHHHHH
Q 005603 589 FEAQSQYKEALVSFSI 604 (688)
Q Consensus 589 ~~~~g~~~~A~~~~~~ 604 (688)
+...|.-++|.+.|-+
T Consensus 862 f~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 862 FTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHhhchHHHHHHHHHh
Confidence 7777777777777644
No 289
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.44 E-value=0.33 Score=48.31 Aligned_cols=83 Identities=13% Similarity=0.087 Sum_probs=40.5
Q ss_pred HHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHH---
Q 005603 426 AVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSAD----QRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIA--- 498 (688)
Q Consensus 426 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~--- 498 (688)
...+++..|...+..+-.. .+. .....++.++... .+..+|..+|..+.+. ..+...+.+|.++..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~--~~~-~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~----g~~~a~~~lg~~~~~G~g 124 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL--GDA-AALALLGQMYGAGKGVSRDKTKAADWYRCAAAD----GLAEALFNLGLMYANGRG 124 (292)
T ss_pred cccccHHHHHHHHHHhhhc--CCh-HHHHHHHHHHHhccCccccHHHHHHHHHHHhhc----ccHHHHHhHHHHHhcCCC
Confidence 3455666666666655441 112 4445555554432 2345555555533322 234455555555554
Q ss_pred -cCChHHHHHHHHHHHHH
Q 005603 499 -QEQPKQAIGTYRILLAM 515 (688)
Q Consensus 499 -~g~~~~A~~~~~~al~~ 515 (688)
..+..+|..+|+++...
T Consensus 125 v~~d~~~A~~~~~~Aa~~ 142 (292)
T COG0790 125 VPLDLVKALKYYEKAAKL 142 (292)
T ss_pred cccCHHHHHHHHHHHHHc
Confidence 23555555555555543
No 290
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.23 E-value=0.062 Score=42.15 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=22.0
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 005603 401 LESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVA 446 (688)
Q Consensus 401 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 446 (688)
+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.++
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 3444445555555555555555555555555555555555554443
No 291
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.17 E-value=1.6 Score=43.47 Aligned_cols=159 Identities=18% Similarity=0.069 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH----cCCHHHH
Q 005603 398 KEALESLNCAFLNEREDPEMMYYLGLEHAVQ----RNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSA----DQRLKDA 469 (688)
Q Consensus 398 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~----~~~~~~A 469 (688)
..+...+..+-.. .++.....++.+|... .+..+|...|+.+. ...++ .+.+.+|.++.. ..+..+|
T Consensus 58 ~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~-~a~~~lg~~~~~G~gv~~d~~~A 132 (292)
T COG0790 58 AKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLA-EALFNLGLMYANGRGVPLDLVKA 132 (292)
T ss_pred HHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccH-HHHHhHHHHHhcCCCcccCHHHH
Confidence 7888888877652 3346777888887654 46888999999554 44555 888899999887 4589999
Q ss_pred HHHHHHHHhhcCCCCc-HHHHHHHHHHHHHcC-------ChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCC
Q 005603 470 QSIVDFSLDEAGSMDQ-LELLRLKAVLQIAQE-------QPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVK 541 (688)
Q Consensus 470 ~~~~~~al~~~p~~~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (688)
..+|+++.+... .. ....+.++.++..-. +...|...|.++-...
T Consensus 133 ~~~~~~Aa~~g~--~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~------------------------- 185 (292)
T COG0790 133 LKYYEKAAKLGN--VEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG------------------------- 185 (292)
T ss_pred HHHHHHHHHcCC--hhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-------------------------
Confidence 999999998764 22 344777777776642 1225666666655541
Q ss_pred cchHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC
Q 005603 542 NLEIATWQDLATIYMK----LGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQS 593 (688)
Q Consensus 542 ~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 593 (688)
++.+...+|.+|.. ..++.+|..+|.++.+... ...++.++ ++...|
T Consensus 186 --~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 186 --NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred --CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 46677777777754 3477888888888887765 67777777 555555
No 292
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.16 E-value=0.5 Score=41.10 Aligned_cols=120 Identities=18% Similarity=0.158 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005603 545 IATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILM 624 (688)
Q Consensus 545 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 624 (688)
...+..+..+-...++.+++...+...--+.|..+..-..-|.++...|+|.+|+..++.+....|..+.+.-.++.|+.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 45566677777888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005603 625 KLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAA 669 (688)
Q Consensus 625 ~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 669 (688)
.+|+.+ =..+-..+++..+ ++.+...... +....+...|.
T Consensus 90 ~~~D~~---Wr~~A~evle~~~-d~~a~~Lv~~-Ll~~~~~~~a~ 129 (160)
T PF09613_consen 90 ALGDPS---WRRYADEVLESGA-DPDARALVRA-LLARADLEPAH 129 (160)
T ss_pred HcCChH---HHHHHHHHHhcCC-ChHHHHHHHH-HHHhccccchh
Confidence 999975 3344455666554 4444443333 33333333333
No 293
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.13 E-value=0.011 Score=36.27 Aligned_cols=31 Identities=13% Similarity=0.091 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 005603 417 MMYYLGLEHAVQRNVEAAFDYAIMYSDTVAG 447 (688)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 447 (688)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4566666666666666666666666666665
No 294
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.03 E-value=0.026 Score=53.35 Aligned_cols=78 Identities=21% Similarity=0.141 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005603 545 IATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEI 622 (688)
Q Consensus 545 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 622 (688)
+..-...+.-....|+.++|...|+.++.+.|.+++++..+|......++.-+|-.+|-+++.++|.+..++.+.+..
T Consensus 116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 444455566667789999999999999999999999999999999999999999999999999999999988876643
No 295
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.02 E-value=0.013 Score=38.28 Aligned_cols=41 Identities=24% Similarity=0.203 Sum_probs=27.0
Q ss_pred HHHHHHhhhhHHhhCChHHHHHHHHHHHHHHHhcCCCCCCC
Q 005603 141 LEAILLKAKSLEELGHCKEAAKECKIILDIVESGLPNGMPE 181 (688)
Q Consensus 141 ~e~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 181 (688)
+.++...|.++..+|++++|...+++++.+.+..++...|+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 34667789999999999999999999999988887776663
No 296
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.89 E-value=0.013 Score=35.44 Aligned_cols=33 Identities=30% Similarity=0.437 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcccCCC
Q 005603 650 DAWMNLGLISKMEGSLQQAADYFQAAYELKLSA 682 (688)
Q Consensus 650 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 682 (688)
.+|+.+|.++...|++++|..+|++++++.|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 467888999999999999999999998887753
No 297
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.88 E-value=1.3 Score=46.06 Aligned_cols=229 Identities=15% Similarity=0.024 Sum_probs=133.1
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhc
Q 005603 308 ELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKS 387 (688)
Q Consensus 308 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~ 387 (688)
+...+.+.......|+++......+..+...|+.+.|+..+...+ +..-.++....++.+|.++..+.++
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v---------~~~~kQ~~~l~~fE~aw~~v~~~~~- 319 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSI---------PIRMKQVKSLMVFERAWLSVGQHQY- 319 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcc---------cHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 444455555556678888888888888888888777777777776 2223334456677778888777777
Q ss_pred cchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHH-HHHHH--------cCCHHHHHHHHHHHH---hhcCCCc-HH-H-
Q 005603 388 ISDTERVFFQKEALESLNCAFLNEREDPEMMYYLG-LEHAV--------QRNVEAAFDYAIMYS---DTVAGNS-GR-G- 452 (688)
Q Consensus 388 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~--------~g~~~~A~~~~~~~l---~~~p~~~-~~-~- 452 (688)
.+|-..+....+.+.-....+..++ -+++. .|+-++|..+++... ...|.+. ++ .
T Consensus 320 ----------~~aad~~~~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~ 389 (546)
T KOG3783|consen 320 ----------SRAADSFDLLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFI 389 (546)
T ss_pred ----------HHHhhHHHHHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHH
Confidence 7777777777665544333343333 22211 234444444333322 2211110 00 0
Q ss_pred ----------------------HHHHHHHHHH--cCCHHHHHHHHHHHHhhcCCC----CcHHHHHHHHHHHHHcCChHH
Q 005603 453 ----------------------WKLLALILSA--DQRLKDAQSIVDFSLDEAGSM----DQLELLRLKAVLQIAQEQPKQ 504 (688)
Q Consensus 453 ----------------------~~~la~~~~~--~~~~~~A~~~~~~al~~~p~~----~~~~~~~~la~~~~~~g~~~~ 504 (688)
++.++.++-. ....++.. -++... ..|.. +..--...+|.++..+|+...
T Consensus 390 ~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~-~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~ 467 (546)
T KOG3783|consen 390 VRKVERFVKRGPLNASILLASPYYELAYFWNGFSRMSKNELE-KMRAEL-ENPKIDDSDDEGLKYLLKGVILRNLGDSEV 467 (546)
T ss_pred HHHHHHHhccccccccccccchHHHHHHHHhhcccCChhhHH-HHHHHH-hccCCCCchHHHHHHHHHHHHHHHcCCHHH
Confidence 1122222111 11112222 111111 11111 233446788999999999999
Q ss_pred HHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCC-hhHHHHHHHHHHhcCC
Q 005603 505 AIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGS-LPDAEICTEKAKSIEF 576 (688)
Q Consensus 505 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p 576 (688)
|..+|...++..-... .+.-..|.+++.+|..|...|. ..++..++.+|-+...
T Consensus 468 a~~~f~i~~~~e~~~~------------------~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~ 522 (546)
T KOG3783|consen 468 APKCFKIQVEKESKRT------------------EDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYAS 522 (546)
T ss_pred HHHHHHHHHHHHHhhc------------------cccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcc
Confidence 9999998886532211 1111248899999999999998 9999999999988764
No 298
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.86 E-value=0.089 Score=42.28 Aligned_cols=46 Identities=11% Similarity=0.080 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 005603 633 IARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYEL 678 (688)
Q Consensus 633 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 678 (688)
.+++.|.++..+.|..+..++.+|.-+-...-|+++..-.++++.+
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 5778888888888988888888888777777788888888888765
No 299
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.80 E-value=0.98 Score=39.49 Aligned_cols=138 Identities=12% Similarity=0.013 Sum_probs=65.4
Q ss_pred CCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcc
Q 005603 464 QRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNL 543 (688)
Q Consensus 464 ~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (688)
+..++|+..|...-+..-.....-+....+.+....|+...|+..|..+-...|.. .+.
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P---------------------~~~ 130 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIP---------------------QIG 130 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCc---------------------chh
Confidence 44455555555544333211223344455555556666666666665554432110 000
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHH-hcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005603 544 EIATWQDLATIYMKLGSLPDAEICTEKAK-SIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEI 622 (688)
Q Consensus 544 ~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 622 (688)
.-.+...-+.++...|.|++-....+..- ..+|-...+.-.||..-++.|++.+|.+.|.+... +...+....+.+.+
T Consensus 131 rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ 209 (221)
T COG4649 131 RDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQI 209 (221)
T ss_pred hHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHH
Confidence 11223344455555666655544433321 12333445555666666666666666666666554 33334444444444
Q ss_pred H
Q 005603 623 L 623 (688)
Q Consensus 623 ~ 623 (688)
.
T Consensus 210 m 210 (221)
T COG4649 210 M 210 (221)
T ss_pred H
Confidence 3
No 300
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.78 E-value=0.97 Score=39.50 Aligned_cols=129 Identities=10% Similarity=-0.058 Sum_probs=66.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcCCCCCCH--HHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHH
Q 005603 297 LTYALSVTGQFELLAEYVEQALPGIYNRA--ERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYK 374 (688)
Q Consensus 297 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 374 (688)
-+.-+.+.|..++|+..|..+-+...... -+.+..|.+....|+...|+..|..+- .....|...+..+..
T Consensus 64 aAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia-------~dt~~P~~~rd~ARl 136 (221)
T COG4649 64 AALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIA-------ADTSIPQIGRDLARL 136 (221)
T ss_pred HHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHh-------ccCCCcchhhHHHHH
Confidence 33444556666666666666554443332 344556666667777777777776663 112222222233344
Q ss_pred HHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005603 375 FLGICYGNVARKSISDTERVFFQKEALESLNCAF-LNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSD 443 (688)
Q Consensus 375 ~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 443 (688)
.-+..+...|.| ++-..-.+..- ..+|-...+.-.||..-.+.|++.+|...|.++..
T Consensus 137 raa~lLvD~gsy-----------~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 137 RAAYLLVDNGSY-----------DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhccccH-----------HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 444455555555 44443333321 22233344445566666666666666666666554
No 301
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.75 E-value=0.029 Score=35.24 Aligned_cols=31 Identities=23% Similarity=0.172 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q 005603 488 LLRLKAVLQIAQEQPKQAIGTYRILLAMIQA 518 (688)
Q Consensus 488 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 518 (688)
++..+|.+|...|++++|+++|++++.+.++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 3667888888888888888888887766443
No 302
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.71 E-value=0.13 Score=52.53 Aligned_cols=88 Identities=18% Similarity=0.233 Sum_probs=68.3
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHH
Q 005603 565 EICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGR-QSMPIARSFLMNALR 643 (688)
Q Consensus 565 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~~~A~~~~~~al~ 643 (688)
...|+.++...+.+...|........+.+.+.+--..|.+++..+|+++..|..-|.-.+..+. .+ .|+..+.++++
T Consensus 91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~--saRalflrgLR 168 (568)
T KOG2396|consen 91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIE--SARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchH--HHHHHHHHHhh
Confidence 4556777777777888888877777777778888888888888888888888888777777666 44 88888888888
Q ss_pred hCCCCHHHHHH
Q 005603 644 LEPTNHDAWMN 654 (688)
Q Consensus 644 ~~p~~~~~~~~ 654 (688)
.+|+++..|..
T Consensus 169 ~npdsp~Lw~e 179 (568)
T KOG2396|consen 169 FNPDSPKLWKE 179 (568)
T ss_pred cCCCChHHHHH
Confidence 88888877654
No 303
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.71 E-value=0.18 Score=39.51 Aligned_cols=67 Identities=18% Similarity=0.082 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhCCCC
Q 005603 564 AEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDY--IPSIISTAEILMKLGRQS 630 (688)
Q Consensus 564 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~ 630 (688)
.+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..+...+-.++..+|.-+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 3456778888899999999999999999999999999999998887765 444444555555555544
No 304
>PRK10941 hypothetical protein; Provisional
Probab=95.64 E-value=0.11 Score=50.20 Aligned_cols=75 Identities=15% Similarity=0.066 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 005603 545 IATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIIST 619 (688)
Q Consensus 545 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 619 (688)
.....++-.+|...++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|...++..++..|+++.+-.-.
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik 255 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIR 255 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHH
Confidence 344455666777777777777777777777777777777777777777777777777777777777776554433
No 305
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.64 E-value=3.6 Score=43.48 Aligned_cols=349 Identities=11% Similarity=-0.020 Sum_probs=184.8
Q ss_pred CchHHHHHHHHHHHHHHHhhhcCCcHHHHHH-HHHHHHhcCCHHHHHHHHHHhcCCC---CCCHHHHHHHHHHHHHcCCc
Q 005603 266 DNVEEAILLLLILMEKVASKEMEWDAEIMDH-LTYALSVTGQFELLAEYVEQALPGI---YNRAERWYILALCYSAAGQN 341 (688)
Q Consensus 266 ~~~eea~~~l~~~~~~~~l~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~g~~ 341 (688)
++.++++.++ +..+...|.....|.. ++.+-...|+.+.....|+++.... .-....|-.+-..-..++++
T Consensus 93 g~~~~s~~Vf-----ergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~ 167 (577)
T KOG1258|consen 93 GNAENSVKVF-----ERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSW 167 (577)
T ss_pred hhHHHHHHHH-----HHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccH
Confidence 3445555554 4445566766776654 4455557788888888999887643 44557777777777888899
Q ss_pred HHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHH-------------------H
Q 005603 342 EAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEAL-------------------E 402 (688)
Q Consensus 342 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~-------------------~ 402 (688)
..-..+|++.+ . .|.+.... ++..=.-+..+...... ...++.+ +
T Consensus 168 k~v~~iyeRil------e----iP~~~~~~-~f~~f~~~l~~~~~~~l-----~~~d~~~~l~~~~~~~~~~~~~~~~~e 231 (577)
T KOG1258|consen 168 KRVANIYERIL------E----IPLHQLNR-HFDRFKQLLNQNEEKIL-----LSIDELIQLRSDVAERSKITHSQEPLE 231 (577)
T ss_pred HHHHHHHHHHH------h----hhhhHhHH-HHHHHHHHHhcCChhhh-----cCHHHHHHHhhhHHhhhhcccccChhH
Confidence 99999999987 1 11110000 00000000000000000 0001110 0
Q ss_pred HHHHHH----HcCCCCHHHHHHHH-------HHHHHcCCHHHHHHHHHHHHhh-----cCCCc--HHHHHHHHHHHHHcC
Q 005603 403 SLNCAF----LNEREDPEMMYYLG-------LEHAVQRNVEAAFDYAIMYSDT-----VAGNS--GRGWKLLALILSADQ 464 (688)
Q Consensus 403 ~~~~al----~~~p~~~~~~~~la-------~~~~~~g~~~~A~~~~~~~l~~-----~p~~~--~~~~~~la~~~~~~~ 464 (688)
.++..+ ...|.....-..+. .++.......+.+-.++..++. .|.+. ...|......-...|
T Consensus 232 ~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g 311 (577)
T KOG1258|consen 232 ELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLG 311 (577)
T ss_pred HHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcc
Confidence 111111 00011111111111 1112222233333333333321 12221 145566666666777
Q ss_pred CHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcch
Q 005603 465 RLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLE 544 (688)
Q Consensus 465 ~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (688)
+++...-.|++++-... .....|...+......|+.+-|-..+..+.+..- +..
T Consensus 312 ~~~~~~~l~ercli~cA--~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~------------------------k~~ 365 (577)
T KOG1258|consen 312 DFSRVFILFERCLIPCA--LYDEFWIKYARWMESSGDVSLANNVLARACKIHV------------------------KKT 365 (577)
T ss_pred cHHHHHHHHHHHHhHHh--hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC------------------------CCC
Confidence 77777777777776555 5666777777777777777777766666665421 224
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHH---HHHHHHhc--CCC-CHHHHHH
Q 005603 545 IATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALV---SFSISLAI--EPD-YIPSIIS 618 (688)
Q Consensus 545 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~---~~~~al~~--~p~-~~~~~~~ 618 (688)
+.+...-+..-...|++..|...+++..+..|....+-........++|+.+.+.. .+.....- ++. ....+..
T Consensus 366 ~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~ 445 (577)
T KOG1258|consen 366 PIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVK 445 (577)
T ss_pred cHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHH
Confidence 55666666666677777777777777777667766666666666677777776663 22222211 111 1223444
Q ss_pred HHHHHHHh-CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005603 619 TAEILMKL-GRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEG 663 (688)
Q Consensus 619 la~~~~~~-g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 663 (688)
.+...... ++.+ .|...+.+++...|.+...|..+-.+....+
T Consensus 446 ~~r~~~~i~~d~~--~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 446 FARLRYKIREDAD--LARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHhcCHH--HHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 44444333 3334 7777777777777777777766666665544
No 306
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.61 E-value=0.17 Score=47.27 Aligned_cols=105 Identities=21% Similarity=0.186 Sum_probs=66.7
Q ss_pred cCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHH-------
Q 005603 499 QEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKA------- 571 (688)
Q Consensus 499 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------- 571 (688)
...+++|++.|.-++-...-.. ......+.++..+|++|...|+.+....++++|
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~------------------~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a 151 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKK------------------EKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEA 151 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC------------------CCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHH
Confidence 4467788888887776533210 011124788999999999999965544444444
Q ss_pred HhcCC------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHH
Q 005603 572 KSIEF------YSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYI-PSIISTAE 621 (688)
Q Consensus 572 l~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~ 621 (688)
+.... +...+.+.+|.+..+.|++++|..+|.+++....... ..+..+|.
T Consensus 152 ~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 152 YENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 43322 1245677888888888888888888888887533222 34444443
No 307
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.53 E-value=3.3 Score=42.28 Aligned_cols=125 Identities=14% Similarity=0.093 Sum_probs=89.1
Q ss_pred hcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHh
Q 005603 303 VTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGN 382 (688)
Q Consensus 303 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~ 382 (688)
..|+.-.|-+.+..++...|.+|......+.+....|+|+.+...+..+- ++ +...+ .+...+-.....
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~---~~---~~s~~-----~~~~~~~r~~~~ 369 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVE---KI---IGTTD-----STLRCRLRSLHG 369 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchh---hh---hcCCc-----hHHHHHHHhhhc
Confidence 45788888888888888888888888888888889999998888776652 11 11111 233334445556
Q ss_pred hhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCc
Q 005603 383 VARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNS 449 (688)
Q Consensus 383 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 449 (688)
.|++ ++|...-+-.+...-+++++..--+......|-++++..++++.+.++|...
T Consensus 370 l~r~-----------~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 370 LARW-----------REALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred hhhH-----------HHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 6777 8888877777766666777766666666677888888888888888877554
No 308
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.52 E-value=0.27 Score=42.69 Aligned_cols=84 Identities=19% Similarity=0.088 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcH
Q 005603 371 EAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSG 450 (688)
Q Consensus 371 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 450 (688)
..+..+..+-...++. +++...+...-.+.|..+.....-|+++...|+|.+|+..++.+....|..+
T Consensus 11 ~gLie~~~~al~~~~~-----------~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p- 78 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDP-----------DDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP- 78 (160)
T ss_pred HHHHHHHHHHHccCCh-----------HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh-
Confidence 4444444455555566 7888888877788888888888888888888888888888888877777777
Q ss_pred HHHHHHHHHHHHcCCH
Q 005603 451 RGWKLLALILSADQRL 466 (688)
Q Consensus 451 ~~~~~la~~~~~~~~~ 466 (688)
.+--.++.|+...|+.
T Consensus 79 ~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 79 YAKALLALCLYALGDP 94 (160)
T ss_pred HHHHHHHHHHHHcCCh
Confidence 7777777777776664
No 309
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.31 E-value=0.039 Score=52.26 Aligned_cols=73 Identities=18% Similarity=0.201 Sum_probs=55.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005603 584 TTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLI 658 (688)
Q Consensus 584 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 658 (688)
..+.-....|+.++|...|+.++.+.|++++++..+|......++.- +|-.+|-+++.+.|.+.+++.+....
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv--~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIV--EADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhH--hhhhhhheeeeeCCCchHHHhhhhcc
Confidence 33444556788888888888888888888888888888777776666 78888888888888888777766543
No 310
>PRK10941 hypothetical protein; Provisional
Probab=95.26 E-value=0.23 Score=47.97 Aligned_cols=82 Identities=13% Similarity=0.044 Sum_probs=68.7
Q ss_pred chhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 005603 365 KEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDT 444 (688)
Q Consensus 365 ~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 444 (688)
+.....+....+-.++...+++ +.|+.+.+..+.+.|+++.-+...|.+|.+.|.+..|..-++..++.
T Consensus 176 ~~~il~Rml~nLK~~~~~~~~~-----------~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 176 NIEVIRKLLDTLKAALMEEKQM-----------ELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHHHHHHHHcCcH-----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 3444566677778888888998 99999999999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHH
Q 005603 445 VAGNSGRGWKLLAL 458 (688)
Q Consensus 445 ~p~~~~~~~~~la~ 458 (688)
.|+++ .+-.....
T Consensus 245 ~P~dp-~a~~ik~q 257 (269)
T PRK10941 245 CPEDP-ISEMIRAQ 257 (269)
T ss_pred CCCch-hHHHHHHH
Confidence 99988 55444333
No 311
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.26 E-value=0.65 Score=37.63 Aligned_cols=102 Identities=16% Similarity=0.177 Sum_probs=65.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 005603 493 AVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAK 572 (688)
Q Consensus 493 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 572 (688)
|.-.+.-|-+++|...+++++.....-+. .++.+...-+..++..|+..+..+|+|++++..-.+++
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~-------------eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL 82 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPA-------------EEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRAL 82 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-T-------------TS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCCh-------------HhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 44456678899999999999987544211 11111122357778889999999999999888777776
Q ss_pred hc-------CCCChhHH----HHHHHHHHHcCCHHHHHHHHHHHHh
Q 005603 573 SI-------EFYSPGSW----HTTGMLFEAQSQYKEALVSFSISLA 607 (688)
Q Consensus 573 ~~-------~p~~~~~~----~~lg~~~~~~g~~~~A~~~~~~al~ 607 (688)
.. +.+....| +..+..+...|+.++|+..|+.+-+
T Consensus 83 ~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 83 RYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 43 33444333 4566777778888888888877654
No 312
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=3.3 Score=40.45 Aligned_cols=280 Identities=12% Similarity=-0.001 Sum_probs=157.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcCC--CCCC--------HHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccc
Q 005603 296 HLTYALSVTGQFELLAEYVEQALPG--IYNR--------AERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQK 365 (688)
Q Consensus 296 ~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 365 (688)
..+.......+.++++..+.+++.. .|.. ......++..|.+.|+..+-..+....- ........
T Consensus 9 e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~R---pf~~~v~K-- 83 (411)
T KOG1463|consen 9 ERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLR---PFLSSVSK-- 83 (411)
T ss_pred HHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH---HHHHHhhh--
Confidence 3444455556667777777777653 1111 1456778888888888887666555542 00110000
Q ss_pred hhhHHHHHHHHHH-HHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCCHHHHHHHH
Q 005603 366 EHFLAEAYKFLGI-CYGNVARKSISDTERVFFQKEALESLNCAFLNERED------PEMMYYLGLEHAVQRNVEAAFDYA 438 (688)
Q Consensus 366 ~~~~~~~~~~lg~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~ 438 (688)
.-.+.....+-. +....+.. +.-+..+..+++..... ...-..+..+|...++|.+|+...
T Consensus 84 -akaaKlvR~Lvd~~~~~~~~~-----------~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~ 151 (411)
T KOG1463|consen 84 -AKAAKLVRSLVDMFLKIDDGT-----------GDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALI 151 (411)
T ss_pred -HHHHHHHHHHHHHHccCCCCc-----------chHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 000111111111 11111111 23333333333222111 112345788999999999999888
Q ss_pred HHHHhh----cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-----CCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 005603 439 IMYSDT----VA-GNSGRGWKLLALILSADQRLKDAQSIVDFSLDEA-----GSMDQLELLRLKAVLQIAQEQPKQAIGT 508 (688)
Q Consensus 439 ~~~l~~----~p-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~la~~~~~~g~~~~A~~~ 508 (688)
...+.. +. ...+++...-..+|....+..+|...+..+-... |....+.+-..-|.++....+|..|-.+
T Consensus 152 ~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSY 231 (411)
T KOG1463|consen 152 NDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSY 231 (411)
T ss_pred HHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHH
Confidence 777643 21 1123666677788888999999988887765432 2012233334456677777889999999
Q ss_pred HHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHH--HHHHhcCCCChhHHHHHH
Q 005603 509 YRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICT--EKAKSIEFYSPGSWHTTG 586 (688)
Q Consensus 509 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~--~~al~~~p~~~~~~~~lg 586 (688)
|-++++-... +...+.-...+-.+-.+-...+..++--..+ +.+++....+..+....+
T Consensus 232 FyEAfEgf~s-------------------~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavA 292 (411)
T KOG1463|consen 232 FYEAFEGFDS-------------------LDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVA 292 (411)
T ss_pred HHHHHccccc-------------------cCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHH
Confidence 9888875332 1222222333333444444556666544433 455666666777888888
Q ss_pred HHHHHc--CCHHHHHHHHHHHHhcCCC
Q 005603 587 MLFEAQ--SQYKEALVSFSISLAIEPD 611 (688)
Q Consensus 587 ~~~~~~--g~~~~A~~~~~~al~~~p~ 611 (688)
..+... .+|+.|+..|..-+..+|-
T Consensus 293 eA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 293 EAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 877653 4788898888887776664
No 313
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.19 E-value=0.092 Score=36.18 Aligned_cols=40 Identities=23% Similarity=0.296 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHH
Q 005603 416 EMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLL 456 (688)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~l 456 (688)
+.++.+|..+.+.|+|++|..+.+.+++..|++. .+....
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~-Qa~~L~ 41 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR-QAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H-HHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH-HHHHHH
Confidence 3567778888888888888888888888888876 554433
No 314
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.19 E-value=0.026 Score=51.21 Aligned_cols=50 Identities=26% Similarity=0.432 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccCCC
Q 005603 633 IARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKLSA 682 (688)
Q Consensus 633 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 682 (688)
.|.+.|.+++.+-|+....|+.+|....+.|+++.|...|++.++++|.+
T Consensus 13 aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 13 AAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred HHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 45555555555555555555555555555555555555555555555543
No 315
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.18 E-value=4.2 Score=41.33 Aligned_cols=244 Identities=12% Similarity=-0.005 Sum_probs=141.8
Q ss_pred HHHHhhhcCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHh
Q 005603 280 EKVASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQ 359 (688)
Q Consensus 280 ~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 359 (688)
.+..+.-.|..+.+|+.....+...++-+.|+...++..+..|. ..+.++.+|....+-+.-..+|++++ +.+.
T Consensus 291 ~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~---q~L~ 364 (660)
T COG5107 291 HNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCT---QDLK 364 (660)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHH---HHHH
Confidence 56667777889999999999999999999999999998887775 66778888888888777778888886 0000
Q ss_pred hhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005603 360 STTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAI 439 (688)
Q Consensus 360 ~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 439 (688)
-.+..+..-...+. .++++...+.+-+-. ....-+|.-+-..-.+..-.+.|...|-
T Consensus 365 ------------r~ys~~~s~~~s~~--------D~N~e~~~Ell~kr~---~k~t~v~C~~~N~v~r~~Gl~aaR~~F~ 421 (660)
T COG5107 365 ------------RKYSMGESESASKV--------DNNFEYSKELLLKRI---NKLTFVFCVHLNYVLRKRGLEAARKLFI 421 (660)
T ss_pred ------------HHHhhhhhhhhccc--------cCCccccHHHHHHHH---hhhhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 00000100000000 000011111111111 1222333333333344445566666666
Q ss_pred HHHhhcCCCcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q 005603 440 MYSDTVAGNSGRGWKLLALI-LSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQA 518 (688)
Q Consensus 440 ~~l~~~p~~~~~~~~~la~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 518 (688)
++-+..-... +++..-|.+ +...|++..|-.+|+-.+...| +.+......-..+...++-..|...|+.++.....
T Consensus 422 k~rk~~~~~h-~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~--d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~ 498 (660)
T COG5107 422 KLRKEGIVGH-HVYIYCAFIEYYATGDRATAYNIFELGLLKFP--DSTLYKEKYLLFLIRINDEENARALFETSVERLEK 498 (660)
T ss_pred HHhccCCCCc-ceeeeHHHHHHHhcCCcchHHHHHHHHHHhCC--CchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHH
Confidence 6655432223 333333332 4566777777777777777777 55544445555566777777777777777665433
Q ss_pred hHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 005603 519 QRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYS 578 (688)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 578 (688)
. ....+|..+...-..-|+...+..+=++.....|..
T Consensus 499 ~-----------------------q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 499 T-----------------------QLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred h-----------------------hhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 1 023455555555566677777766666666666643
No 316
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.12 E-value=2.6 Score=43.91 Aligned_cols=245 Identities=13% Similarity=0.071 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005603 398 KEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNS-GRGWKLLALILSADQRLKDAQSIVDFS 476 (688)
Q Consensus 398 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~~la~~~~~~~~~~~A~~~~~~a 476 (688)
+...+.+.......|+++...+..+..+...|+.+.|+..++..++..-... .-.++.+|.++.-+.+|.+|-..+...
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4455566666677899998889999999999998888888888776111100 134567788888899999999999998
Q ss_pred HhhcCCCCcHHHHHHHHHHHHH--------cCChHHHHHHHHHHHHHHHhhHHhhhh---ccccccccccccccCCcchH
Q 005603 477 LDEAGSMDQLELLRLKAVLQIA--------QEQPKQAIGTYRILLAMIQAQRELHSK---NFHKTKYITSEAPSVKNLEI 545 (688)
Q Consensus 477 l~~~p~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 545 (688)
.+... |.....-+..|-++.. .|+-++|-..++....+..+.+..... ..+.+.+...+. ...+..+
T Consensus 330 ~desd-WS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~-~~~~~~~ 407 (546)
T KOG3783|consen 330 RDESD-WSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRG-PLNASIL 407 (546)
T ss_pred Hhhhh-hhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccc-ccccccc
Confidence 88775 3443333344344322 345555555554444432221110000 000111111111 0011011
Q ss_pred H--HHHHHHHHHHHc--CChhHHHHHHHHHHh---c-CCCCh-hHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CC--
Q 005603 546 A--TWQDLATIYMKL--GSLPDAEICTEKAKS---I-EFYSP-GSWHTTGMLFEAQSQYKEALVSFSISLAIE---PD-- 611 (688)
Q Consensus 546 ~--~~~~la~~~~~~--g~~~~A~~~~~~al~---~-~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~-- 611 (688)
. .++.++.++... ...++..+ ++..+. . ++++. --+..+|.++..+|+...|..+|..+++.. ..
T Consensus 408 la~P~~El~Y~Wngf~~~s~~~l~k-~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~ 486 (546)
T KOG3783|consen 408 LASPYYELAYFWNGFSRMSKNELEK-MRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDL 486 (546)
T ss_pred ccchHHHHHHHHhhcccCChhhHHH-HHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcccc
Confidence 1 223333333221 11222221 111111 1 11111 124556777777777777777777666321 11
Q ss_pred --CHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCC
Q 005603 612 --YIPSIISTAEILMKLGR-QSMPIARSFLMNALRLEPT 647 (688)
Q Consensus 612 --~~~~~~~la~~~~~~g~-~~~~~A~~~~~~al~~~p~ 647 (688)
.|.+++.+|.++..+|. .. ++..++.+|-....+
T Consensus 487 w~~PfA~YElA~l~~~~~g~~~--e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 487 WAVPFALYELALLYWDLGGGLK--EARALLLKAREYASD 523 (546)
T ss_pred ccccHHHHHHHHHHHhcccChH--HHHHHHHHHHhhccc
Confidence 24566777777777666 44 777777776665433
No 317
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.06 E-value=1.2 Score=38.07 Aligned_cols=85 Identities=14% Similarity=-0.002 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005603 546 ATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMK 625 (688)
Q Consensus 546 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 625 (688)
..+..+...-...++.+++...+...--+.|+.+..-..-|.++...|+|++|+..++...+-.+..+.+.-.++.|+.-
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 34444555555689999999999999999999999999999999999999999999999998888888888889999999
Q ss_pred hCCCC
Q 005603 626 LGRQS 630 (688)
Q Consensus 626 ~g~~~ 630 (688)
+|+.+
T Consensus 91 l~Dp~ 95 (153)
T TIGR02561 91 KGDAE 95 (153)
T ss_pred cCChH
Confidence 99875
No 318
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.94 E-value=0.05 Score=32.59 Aligned_cols=29 Identities=24% Similarity=0.426 Sum_probs=13.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005603 582 WHTTGMLFEAQSQYKEALVSFSISLAIEP 610 (688)
Q Consensus 582 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p 610 (688)
+..+|.++...|++++|+..++++++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 44444444444444444444444444443
No 319
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.89 E-value=1.7 Score=35.33 Aligned_cols=94 Identities=15% Similarity=0.024 Sum_probs=64.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhcCCCc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------hcCCCC
Q 005603 423 LEHAVQRNVEAAFDYAIMYSDTVAGNS-----------GRGWKLLALILSADQRLKDAQSIVDFSLD-------EAGSMD 484 (688)
Q Consensus 423 ~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~al~-------~~p~~~ 484 (688)
.-....|-|++|...++++.+....-| .-++..|+..+..+|+|++++...+.++. ++. +
T Consensus 17 e~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~q--d 94 (144)
T PF12968_consen 17 ERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQ--D 94 (144)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTS--T
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccc--c
Confidence 334556788888888888877642221 13556778888899999988888887773 333 3
Q ss_pred cHH----HHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q 005603 485 QLE----LLRLKAVLQIAQEQPKQAIGTYRILLAMIQA 518 (688)
Q Consensus 485 ~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 518 (688)
... +.+..+..+...|+.++|+..|+.+-++...
T Consensus 95 eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaE 132 (144)
T PF12968_consen 95 EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAE 132 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 433 3467888899999999999999998887443
No 320
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.88 E-value=2.1 Score=45.29 Aligned_cols=251 Identities=15% Similarity=0.082 Sum_probs=134.8
Q ss_pred HHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhH---HHHHhHhhhcccchhhHHHHHHH
Q 005603 299 YALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQ---VSRGVIQSTTSQKEHFLAEAYKF 375 (688)
Q Consensus 299 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~ 375 (688)
..+...|.+++|...-=- .. -..-|..||......=+++-|.+.|.++- +.+ .+..+......-...--..
T Consensus 564 ~q~Ieag~f~ea~~iacl--gV---v~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~-li~EL~~~k~rge~P~~iL 637 (1081)
T KOG1538|consen 564 YQYIERGLFKEAYQIACL--GV---TDTDWRELAMEALEALDFETARKAYIRVRDLRYLE-LISELEERKKRGETPNDLL 637 (1081)
T ss_pred hhhhhccchhhhhccccc--ce---ecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHH-HHHHHHHHHhcCCCchHHH
Confidence 345566666665432111 11 11346777877778888888888888764 111 0110111000000012245
Q ss_pred HHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hcCCCc
Q 005603 376 LGICYGNVARKSISDTERVFFQKEALESLNCAFLNERE----DPEMMYYLGLEHAVQRNVEAAFDYAIMYSD--TVAGNS 449 (688)
Q Consensus 376 lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~ 449 (688)
++..+...|++ .+|.+.|.+.-..+.. ..--.+.++..+...|..++-....++-.+ .+-..|
T Consensus 638 lA~~~Ay~gKF-----------~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP 706 (1081)
T KOG1538|consen 638 LADVFAYQGKF-----------HEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP 706 (1081)
T ss_pred HHHHHHhhhhH-----------HHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc
Confidence 67777778888 8888777664211100 011234566666666666555444443221 111222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH------HHHhhcCCC--CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHH
Q 005603 450 GRGWKLLALILSADQRLKDAQSIVD------FSLDEAGSM--DQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRE 521 (688)
Q Consensus 450 ~~~~~~la~~~~~~~~~~~A~~~~~------~al~~~p~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 521 (688)
..-|..+...|+.++|+.+.- -++++..+. ...+.+...+..+.....+.-|-++|.++-..
T Consensus 707 ----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------ 776 (1081)
T KOG1538|consen 707 ----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------ 776 (1081)
T ss_pred ----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH------
Confidence 123566777788887776532 222221110 23344445555555555566666655544322
Q ss_pred hhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 005603 522 LHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVS 601 (688)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 601 (688)
..+.+++...++|.+|...-++.-+. -+++++..|..+....++++|.+.
T Consensus 777 ---------------------------ksiVqlHve~~~W~eAFalAe~hPe~---~~dVy~pyaqwLAE~DrFeEAqkA 826 (1081)
T KOG1538|consen 777 ---------------------------KSLVQLHVETQRWDEAFALAEKHPEF---KDDVYMPYAQWLAENDRFEEAQKA 826 (1081)
T ss_pred ---------------------------HHHhhheeecccchHhHhhhhhCccc---cccccchHHHHhhhhhhHHHHHHH
Confidence 23445667788999998776553332 345677788888888888888888
Q ss_pred HHHHH
Q 005603 602 FSISL 606 (688)
Q Consensus 602 ~~~al 606 (688)
|.+|-
T Consensus 827 fhkAG 831 (1081)
T KOG1538|consen 827 FHKAG 831 (1081)
T ss_pred HHHhc
Confidence 87763
No 321
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.4 Score=50.13 Aligned_cols=125 Identities=22% Similarity=0.167 Sum_probs=86.9
Q ss_pred cCChhHHHHHHHHHHhcCCCChhHHHH--HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHH
Q 005603 558 LGSLPDAEICTEKAKSIEFYSPGSWHT--TGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIAR 635 (688)
Q Consensus 558 ~g~~~~A~~~~~~al~~~p~~~~~~~~--lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~ 635 (688)
.|...-++..+...+.++|.++..+.. +...+...+....+...+..++..+|++..+..+++..+...|... .+.
T Consensus 44 ~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~--~~~ 121 (620)
T COG3914 44 EGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQF--LAL 121 (620)
T ss_pred cCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHH--HHH
Confidence 344444666666666677777765433 3666666777777788888888888888888888888877776665 444
Q ss_pred HHH-HHHHHhCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHcccCCCCC
Q 005603 636 SFL-MNALRLEPTNHDAWMNL------GLISKMEGSLQQAADYFQAAYELKLSAPV 684 (688)
Q Consensus 636 ~~~-~~al~~~p~~~~~~~~l------g~~~~~~g~~~~A~~~~~~al~l~p~~~~ 684 (688)
..+ +.+....|++......+ +.....+|+..++....+++..+.|.+|.
T Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~ 177 (620)
T COG3914 122 ADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPR 177 (620)
T ss_pred HHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhh
Confidence 433 44777777776655544 77777788888888888888888877653
No 322
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.69 E-value=0.2 Score=34.57 Aligned_cols=29 Identities=24% Similarity=0.209 Sum_probs=10.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 005603 585 TGMLFEAQSQYKEALVSFSISLAIEPDYI 613 (688)
Q Consensus 585 lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 613 (688)
+|..+.+.|+|++|..+.+.+++.+|++.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 33333344444444444444444444333
No 323
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.61 E-value=5.7 Score=40.08 Aligned_cols=127 Identities=17% Similarity=0.199 Sum_probs=101.5
Q ss_pred ChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCC---ChHHH
Q 005603 560 SLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQS--QYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQ---SMPIA 634 (688)
Q Consensus 560 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---~~~~A 634 (688)
.+++-+.+...++..+|++..+|+....++.+.+ ++..-+..++++++.+|.+..+|...-.+....... . .+=
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~-~~E 168 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLE-KEE 168 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccc-hhH
Confidence 4667778888999999999999999999998877 468889999999999999988888776666555443 3 367
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH------cCC------HHHHHHHHHHHHcccCCCCCCCC
Q 005603 635 RSFLMNALRLEPTNHDAWMNLGLISKM------EGS------LQQAADYFQAAYELKLSAPVQSF 687 (688)
Q Consensus 635 ~~~~~~al~~~p~~~~~~~~lg~~~~~------~g~------~~~A~~~~~~al~l~p~~~~~~f 687 (688)
+.+..+++..++.|..+|.....++.. .|+ ...-.+.-..|+-.+|+++.+.|
T Consensus 169 l~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~Wf 233 (421)
T KOG0529|consen 169 LEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWF 233 (421)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceee
Confidence 788899999999999999998887752 342 34556677778888999988765
No 324
>PRK11619 lytic murein transglycosylase; Provisional
Probab=94.47 E-value=9.9 Score=42.23 Aligned_cols=246 Identities=8% Similarity=-0.050 Sum_probs=127.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHH
Q 005603 411 EREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLR 490 (688)
Q Consensus 411 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 490 (688)
.|.+....+.++......|+.++|.....++.......+ .....+-..+...|........-+--+.... .+.....
T Consensus 125 ~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p-~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~--~~~~lA~ 201 (644)
T PRK11619 125 KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLP-NACDKLFSVWQQSGKQDPLAYLERIRLAMKA--GNTGLVT 201 (644)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC-hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC--CCHHHHH
Confidence 477788888888888889998888877777766555545 5444444444444443332211111111111 1222222
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 005603 491 LKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEK 570 (688)
Q Consensus 491 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 570 (688)
.+...+ +.-.++.......+...|........ ...... ...-...++..-....+.+.|...+.+
T Consensus 202 ~l~~~l---~~~~~~~a~a~~al~~~p~~~~~~~~-----------~~~~~~-~~~~~~~~~l~Rlar~d~~~A~~~~~~ 266 (644)
T PRK11619 202 YLAKQL---PADYQTIASALIKLQNDPNTVETFAR-----------TTGPTD-FTRQMAAVAFASVARQDAENARLMIPS 266 (644)
T ss_pred HHHHhc---ChhHHHHHHHHHHHHHCHHHHHHHhh-----------ccCCCh-hhHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 222211 10001111111111122221111100 000000 011122233333456677888888887
Q ss_pred HHhcCCCCh----hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Q 005603 571 AKSIEFYSP----GSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEP 646 (688)
Q Consensus 571 al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p 646 (688)
......-+. .++..+|.-....+...+|...+..+..... +...+.....+-...++++ .+...+...-....
T Consensus 267 ~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~~~dw~--~~~~~i~~L~~~~~ 343 (644)
T PRK11619 267 LVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALGTGDRR--GLNTWLARLPMEAK 343 (644)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHHccCHH--HHHHHHHhcCHhhc
Confidence 655443332 2344555444444336788888877654332 3333344444555777776 66666666433334
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 005603 647 TNHDAWMNLGLISKMEGSLQQAADYFQAAYE 677 (688)
Q Consensus 647 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 677 (688)
+.....|.+|..+...|+.++|...|+++..
T Consensus 344 ~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 344 EKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred cCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 5677889999999999999999999998754
No 325
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.36 E-value=1.2 Score=41.52 Aligned_cols=103 Identities=15% Similarity=0.022 Sum_probs=67.0
Q ss_pred CCHHHHHHHHHHHHhh----c-CCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccc
Q 005603 464 QRLKDAQSIVDFSLDE----A-GSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAP 538 (688)
Q Consensus 464 ~~~~~A~~~~~~al~~----~-p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (688)
..+++|++.|.-|+-. . +....+.++..+|.+|...|+.+.....+++|+.........-.. .
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~------------~ 158 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDF------------P 158 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcC------------C
Confidence 3456666666555421 1 101346677788888888888777777777776664442111100 0
Q ss_pred cCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 005603 539 SVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYS 578 (688)
Q Consensus 539 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 578 (688)
........+.+.+|.+..+.|++++|..+|.+++.....+
T Consensus 159 ~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 159 IEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred CCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 1122357788999999999999999999999999865443
No 326
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.23 E-value=2.7 Score=36.02 Aligned_cols=68 Identities=19% Similarity=0.106 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCH
Q 005603 398 KEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRL 466 (688)
Q Consensus 398 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~ 466 (688)
+++...+...--+.|+.+.....-|.++...|+|++|+..++...+..+..+ ...-.++.|+...|+.
T Consensus 27 ~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p-~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 27 YDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP-YGKALLALCLNAKGDA 94 (153)
T ss_pred HHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch-HHHHHHHHHHHhcCCh
Confidence 8888888888888899998888889999999999999999998888777776 6777777777766654
No 327
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.94 E-value=0.55 Score=42.41 Aligned_cols=61 Identities=15% Similarity=0.057 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005603 545 IATWQDLATIYMKLGSLPDAEICTEKAKSIEFYS---PGSWHTTGMLFEAQSQYKEALVSFSIS 605 (688)
Q Consensus 545 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~a 605 (688)
..++..+|..|.+.|+.++|+++|.++....... .+.+..+..+....+++.....+..++
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3445555555555555555555555544432211 233444444444555555555444444
No 328
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=93.93 E-value=0.095 Score=49.88 Aligned_cols=81 Identities=9% Similarity=0.028 Sum_probs=40.0
Q ss_pred cccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 005603 537 APSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHT-TGMLFEAQSQYKEALVSFSISLAIEPDYIPS 615 (688)
Q Consensus 537 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 615 (688)
.....+.++..|...+..-...|.+.+--..|.+++..+|.+.+.|.. -+.-+...++++.+...|.++++.+|+.+..
T Consensus 99 ~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~i 178 (435)
T COG5191 99 STNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRI 178 (435)
T ss_pred hhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchH
Confidence 333344455555555554455555555555555555555555555443 2233344455555555555555555555544
Q ss_pred HH
Q 005603 616 II 617 (688)
Q Consensus 616 ~~ 617 (688)
|.
T Consensus 179 w~ 180 (435)
T COG5191 179 WI 180 (435)
T ss_pred HH
Confidence 44
No 329
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.77 E-value=0.42 Score=39.77 Aligned_cols=75 Identities=17% Similarity=0.103 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHHHcC---CHHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHH
Q 005603 579 PGSWHTTGMLFEAQS---QYKEALVSFSISLA-IEPD-YIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWM 653 (688)
Q Consensus 579 ~~~~~~lg~~~~~~g---~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~ 653 (688)
....+++++++.... +..+.+.+++..++ -.|. .-+..+.++..+.+.++|+ .++.+.+..++..|+|..+..
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~--~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYS--KSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHH--HHHHHHHHHHhhCCCcHHHHH
Confidence 445666666666544 34566777777765 3333 2356666777777777777 777777777777777766554
Q ss_pred HH
Q 005603 654 NL 655 (688)
Q Consensus 654 ~l 655 (688)
..
T Consensus 110 Lk 111 (149)
T KOG3364|consen 110 LK 111 (149)
T ss_pred HH
Confidence 33
No 330
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=93.77 E-value=0.15 Score=52.27 Aligned_cols=103 Identities=15% Similarity=0.001 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005603 544 EIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQ---SQYKEALVSFSISLAIEPDYIPSIISTA 620 (688)
Q Consensus 544 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la 620 (688)
..+.+..-|.--+..+.+..|+..|.+++...|.....+.+.+.++.+. |+.-.|+..+..+++++|....+++.++
T Consensus 373 ~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la 452 (758)
T KOG1310|consen 373 NIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLA 452 (758)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHH
Confidence 3344444444444445566777777777777777776666666666554 3455566666667777777777777777
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCCC
Q 005603 621 EILMKLGRQSMPIARSFLMNALRLEPTN 648 (688)
Q Consensus 621 ~~~~~~g~~~~~~A~~~~~~al~~~p~~ 648 (688)
.++..++++. +|+.....+....|.+
T Consensus 453 ~aL~el~r~~--eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 453 RALNELTRYL--EALSCHWALQMSFPTD 478 (758)
T ss_pred HHHHHHhhHH--HhhhhHHHHhhcCchh
Confidence 7777777776 7777666655556644
No 331
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.65 E-value=0.11 Score=47.20 Aligned_cols=60 Identities=15% Similarity=0.246 Sum_probs=55.2
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 005603 554 IYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYI 613 (688)
Q Consensus 554 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 613 (688)
.....++.+.|.+.|.+++.+.|+....|+.+|....+.|+++.|.+.|++.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 445678999999999999999999999999999999999999999999999999998753
No 332
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=93.64 E-value=14 Score=40.88 Aligned_cols=241 Identities=10% Similarity=0.008 Sum_probs=152.3
Q ss_pred hHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH---HcCCHHHHH
Q 005603 394 VFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILS---ADQRLKDAQ 470 (688)
Q Consensus 394 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~---~~~~~~~A~ 470 (688)
.+..++-+.-++.-+.+++.+...+..|..++...|++++-...-.++.++.|..+ ..|.....-.. ..+.-.++.
T Consensus 92 ~~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~-~lWl~Wl~d~~~mt~s~~~~~v~ 170 (881)
T KOG0128|consen 92 EGGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPP-HLWLEWLKDELSMTQSEERKEVE 170 (881)
T ss_pred cccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhccCcchhHHH
Confidence 33336667777777888888888999999999999999998888888888899988 88876554332 336778888
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHHH-------HHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcc
Q 005603 471 SIVDFSLDEAGSMDQLELLRLKAVLQ-------IAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNL 543 (688)
Q Consensus 471 ~~~~~al~~~p~~~~~~~~~~la~~~-------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (688)
..|++++.... ...+|...+... ...++++.-...|.+++...-.... ....
T Consensus 171 ~~~ekal~dy~---~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t------------------~G~~ 229 (881)
T KOG0128|consen 171 ELFEKALGDYN---SVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHIT------------------EGAA 229 (881)
T ss_pred HHHHHHhcccc---cchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhc------------------ccHH
Confidence 89999886553 444554444433 4446677788888888875322111 1112
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhH----HHHHH--H-HHHHcCCHHHHHHH-------HHHHHhcC
Q 005603 544 EIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGS----WHTTG--M-LFEAQSQYKEALVS-------FSISLAIE 609 (688)
Q Consensus 544 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~----~~~lg--~-~~~~~g~~~~A~~~-------~~~al~~~ 609 (688)
....+...-..|...-..++-+.++...+... .+..+ |.... . ......+++.|..- +++.++..
T Consensus 230 ~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~ 308 (881)
T KOG0128|consen 230 IWEMYREFEVTYLCNVEQRQVIALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKE 308 (881)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhh
Confidence 45556666666666665666777777666654 22111 11111 1 11223344444443 33444445
Q ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005603 610 PDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLIS 659 (688)
Q Consensus 610 p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 659 (688)
|.....|..+-......|... .-...+++++.-.+.+...|...|...
T Consensus 309 ~~~~q~~~~yidfe~~~G~p~--ri~l~~eR~~~E~~~~~~~wi~y~~~~ 356 (881)
T KOG0128|consen 309 PIKDQEWMSYIDFEKKSGDPV--RIQLIEERAVAEMVLDRALWIGYGVYL 356 (881)
T ss_pred HHHHHHHHHHHHHHHhcCCch--HHHHHHHHHHHhccccHHHHhhhhhhc
Confidence 555566777777777778776 566667777777777777777666543
No 333
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.47 E-value=3 Score=43.84 Aligned_cols=157 Identities=18% Similarity=0.201 Sum_probs=91.2
Q ss_pred HHHhcCCHHHHHHHHH--HhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHH
Q 005603 300 ALSVTGQFELLAEYVE--QALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLG 377 (688)
Q Consensus 300 ~~~~~g~~~~A~~~~~--~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg 377 (688)
.....|+++++.++.. +.++.-| ......++..+.+.|..+.|+.+-+.- ...+.|+
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~-------------------~~rFeLA 328 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDP-------------------DHRFELA 328 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H-------------------HHHHHHH
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCCh-------------------HHHhHHH
Confidence 3456788888777776 3443334 344667778888888888887543321 3334333
Q ss_pred HHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHH
Q 005603 378 ICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLA 457 (688)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la 457 (688)
. ..|+. +.|.+..+ ..+++..|..||.....+|+++-|..+|+++ .-+..+.
T Consensus 329 l---~lg~L-----------~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~---------~d~~~L~ 380 (443)
T PF04053_consen 329 L---QLGNL-----------DIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKA---------KDFSGLL 380 (443)
T ss_dssp H---HCT-H-----------HHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHC---------T-HHHHH
T ss_pred H---hcCCH-----------HHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhh---------cCccccH
Confidence 3 45555 66665543 2357889999999999999999999998876 4455667
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005603 458 LILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRIL 512 (688)
Q Consensus 458 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 512 (688)
.+|...|+.+.=.++.+.+..... +...-.++...|+.++.++.+.+.
T Consensus 381 lLy~~~g~~~~L~kl~~~a~~~~~-------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 381 LLYSSTGDREKLSKLAKIAEERGD-------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHTT--------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHHHccC-------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 777788887665555555544332 112223455667777777776654
No 334
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.47 E-value=0.95 Score=40.92 Aligned_cols=105 Identities=10% Similarity=-0.123 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhcccc
Q 005603 451 RGWKLLALILSADQRLKDAQSIVDFSLDEAGSM-DQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHK 529 (688)
Q Consensus 451 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 529 (688)
.++..+|..|.+.|+.+.|++.|.++.+....+ ...+.+..+.++.+..+++........++-......
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~---------- 106 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG---------- 106 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc----------
Confidence 344455555555555555555555544433211 234455555666666666666666655555442220
Q ss_pred ccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 005603 530 TKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSI 574 (688)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 574 (688)
.+.......-..-|..++..++|.+|...|-.+..-
T Consensus 107 ---------~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 107 ---------GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred ---------chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 000001223334455555667777777777665443
No 335
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.47 E-value=0.42 Score=48.45 Aligned_cols=125 Identities=14% Similarity=0.030 Sum_probs=94.5
Q ss_pred HHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHH
Q 005603 556 MKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIAR 635 (688)
Q Consensus 556 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~ 635 (688)
+..|+...|-.-+..++...|..|......+.+...+|.|+.+...+..+-..-.....+...+-.....+|+++ +|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~--~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWR--EAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHH--HHH
Confidence 345788888888888888888888888888888889999998888876655544444445555556677788888 888
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccCCC
Q 005603 636 SFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKLSA 682 (688)
Q Consensus 636 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 682 (688)
..-+-.+...-+++++...-+..-..+|-+++|.-++++.+.++|..
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 88777777666677766666666677788888888888888887753
No 336
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.46 E-value=15 Score=40.81 Aligned_cols=68 Identities=12% Similarity=-0.078 Sum_probs=46.8
Q ss_pred HHHhhhcCCcHHHHHHHHH---HHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhH
Q 005603 281 KVASKEMEWDAEIMDHLTY---ALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQ 352 (688)
Q Consensus 281 ~~~l~~~p~~~~~~~~l~~---~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 352 (688)
..++..+|+.|..-..... .+.+.+++...+.++. ..|.+......++......|+.++|....+++-
T Consensus 86 ~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~----~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW 156 (644)
T PRK11619 86 TNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSP----EKPKPVEARCNYYYAKWATGQQQEAWQGAKELW 156 (644)
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 4567777877654444333 3345667776666332 347788888888999999999988887777764
No 337
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.38 E-value=3.6 Score=43.64 Aligned_cols=182 Identities=13% Similarity=0.055 Sum_probs=97.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcCCCCC----CHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHH
Q 005603 296 HLTYALSVTGQFELLAEYVEQALPGIYN----RAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAE 371 (688)
Q Consensus 296 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 371 (688)
.++..+.-.|+|.+|.+.|.+.-..+.. ..-..+.++.-++..|..++-..+.++-. ++...-..+ .
T Consensus 637 LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA------~WAr~~keP---k 707 (1081)
T KOG1538|consen 637 LLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRA------DWARNIKEP---K 707 (1081)
T ss_pred HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH------HHhhhcCCc---H
Confidence 4566666677777777777653211100 00123445556666666555544444332 111100000 0
Q ss_pred HHHHHHHHHHhhhhhccchHHhhHHHHHHHHHH----------HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005603 372 AYKFLGICYGNVARKSISDTERVFFQKEALESL----------NCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMY 441 (688)
Q Consensus 372 ~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~----------~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 441 (688)
.-+..+...|+. .+|+.+. +-+-+++..+.+.+..++..+.....+.-|.+.|.++
T Consensus 708 ---aAAEmLiSaGe~-----------~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~ 773 (1081)
T KOG1538|consen 708 ---AAAEMLISAGEH-----------VKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKM 773 (1081)
T ss_pred ---HHHHHhhcccch-----------hhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHh
Confidence 112334444554 5554432 2222444445556666666666666666666666654
Q ss_pred HhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005603 442 SDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLA 514 (688)
Q Consensus 442 l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 514 (688)
= -...+..++...+++++|..+.++.-+.- .++++-.|+.+....++++|.+.|.++-.
T Consensus 774 g---------D~ksiVqlHve~~~W~eAFalAe~hPe~~-----~dVy~pyaqwLAE~DrFeEAqkAfhkAGr 832 (1081)
T KOG1538|consen 774 G---------DLKSLVQLHVETQRWDEAFALAEKHPEFK-----DDVYMPYAQWLAENDRFEEAQKAFHKAGR 832 (1081)
T ss_pred c---------cHHHHhhheeecccchHhHhhhhhCcccc-----ccccchHHHHhhhhhhHHHHHHHHHHhcc
Confidence 1 12234566777889999888777643333 34666777777777777777777766543
No 338
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.12 E-value=0.19 Score=32.54 Aligned_cols=30 Identities=23% Similarity=0.392 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccc
Q 005603 650 DAWMNLGLISKMEGSLQQAADYFQAAYELK 679 (688)
Q Consensus 650 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 679 (688)
.++.++|.+|...|++++|..++++++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 567899999999999999999999998753
No 339
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.95 E-value=1.3 Score=37.08 Aligned_cols=77 Identities=17% Similarity=0.161 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHH-cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 005603 370 AEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFL-NERE-DPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAG 447 (688)
Q Consensus 370 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 447 (688)
....+.++.++....+. .+..+.+.+++..++ -.|. .-+..+.|+..+.+.++|+.++.+++..++..|+
T Consensus 32 ~~s~f~lAwaLV~S~~~--------~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDT--------EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred HHHHHHHHHHHHcccch--------HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 45566666666554332 334788889998886 4443 3567788999999999999999999999999998
Q ss_pred CcHHHHHH
Q 005603 448 NSGRGWKL 455 (688)
Q Consensus 448 ~~~~~~~~ 455 (688)
+. .+...
T Consensus 104 n~-Qa~~L 110 (149)
T KOG3364|consen 104 NR-QALEL 110 (149)
T ss_pred cH-HHHHH
Confidence 87 55433
No 340
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.95 E-value=6.1 Score=39.90 Aligned_cols=132 Identities=14% Similarity=0.131 Sum_probs=99.3
Q ss_pred ChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcC--ChhHHHHHHHHHHhcCCCC
Q 005603 501 QPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLG--SLPDAEICTEKAKSIEFYS 578 (688)
Q Consensus 501 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~ 578 (688)
..++-+.....++..+|+ ...+|+...+++.+.+ ++..=+....++++.+|.+
T Consensus 90 ~ld~eL~~~~~~L~~npk-------------------------sY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RN 144 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPK-------------------------SYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRN 144 (421)
T ss_pred hhHHHHHHHHHHHHhCch-------------------------hHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCccc
Confidence 355666777778888666 7899999999998776 4688899999999999999
Q ss_pred hhHHHHHHHHHHHcC----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh------CC-CC---hHHHHHHHHHHHHh
Q 005603 579 PGSWHTTGMLFEAQS----QYKEALVSFSISLAIEPDYIPSIISTAEILMKL------GR-QS---MPIARSFLMNALRL 644 (688)
Q Consensus 579 ~~~~~~lg~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------g~-~~---~~~A~~~~~~al~~ 644 (688)
..+|...=.+..... ...+-+++..+++.-++.+..+|.....++..+ |+ +. +..-+.....++-.
T Consensus 145 fh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFT 224 (421)
T KOG0529|consen 145 FHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFT 224 (421)
T ss_pred ccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhc
Confidence 888876655544332 356778889999999999999999998887643 31 11 23445556667778
Q ss_pred CCCCHHHHHHHHH
Q 005603 645 EPTNHDAWMNLGL 657 (688)
Q Consensus 645 ~p~~~~~~~~lg~ 657 (688)
+|++..+|+..-.
T Consensus 225 dp~DqS~WfY~rW 237 (421)
T KOG0529|consen 225 DPEDQSCWFYHRW 237 (421)
T ss_pred CccccceeeehHH
Confidence 9999999887433
No 341
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.73 E-value=9.5 Score=36.44 Aligned_cols=203 Identities=10% Similarity=-0.022 Sum_probs=111.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcCCCC--------CCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchh
Q 005603 296 HLTYALSVTGQFELLAEYVEQALPGIY--------NRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEH 367 (688)
Q Consensus 296 ~l~~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 367 (688)
.++.-..+.+++++|+..|.+++.... ........++..|...|++..-.+.....- .+..... .+..
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sr---e~m~~ft-k~k~ 83 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSR---EAMEDFT-KPKI 83 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhH---HHHHHhc-chhH
Confidence 455666677788888888888876421 112456778888888888776444443332 0000000 0000
Q ss_pred hHHHHHHHHHH-HHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005603 368 FLAEAYKFLGI-CYGNVARKSISDTERVFFQKEALESLNCAFLNERED------PEMMYYLGLEHAVQRNVEAAFDYAIM 440 (688)
Q Consensus 368 ~~~~~~~~lg~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~ 440 (688)
......+-. .-...... +.-+..+...++..... ...-..++..+.+.|+|.+|+.....
T Consensus 84 --~KiirtLiekf~~~~dsl-----------~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ 150 (421)
T COG5159 84 --TKIIRTLIEKFPYSSDSL-----------EDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINP 150 (421)
T ss_pred --HHHHHHHHHhcCCCCccH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 011111100 00001111 33333333333221111 11234577888999999999988776
Q ss_pred HHhh------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-----CCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 005603 441 YSDT------VAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEA-----GSMDQLELLRLKAVLQIAQEQPKQAIGTY 509 (688)
Q Consensus 441 ~l~~------~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~la~~~~~~g~~~~A~~~~ 509 (688)
.+.. .|.-. ..+..-..+|....+..++...+..+-... |....+.+-..-|.+++...+|..|-.+|
T Consensus 151 ll~ElKk~DDK~~Li-~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF 229 (421)
T COG5159 151 LLHELKKYDDKINLI-TVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYF 229 (421)
T ss_pred HHHHHHhhcCcccee-ehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHH
Confidence 6543 23333 677777888888888888887777665332 21122233334466677778899999998
Q ss_pred HHHHHHH
Q 005603 510 RILLAMI 516 (688)
Q Consensus 510 ~~al~~~ 516 (688)
-++++-.
T Consensus 230 ~Ea~Egf 236 (421)
T COG5159 230 IEALEGF 236 (421)
T ss_pred HHHHhcc
Confidence 8888753
No 342
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.12 E-value=13 Score=39.37 Aligned_cols=34 Identities=15% Similarity=0.168 Sum_probs=29.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhH
Q 005603 319 PGIYNRAERWYILALCYSAAGQNEAALNLLKKDQ 352 (688)
Q Consensus 319 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 352 (688)
..+|-..+.+..++.+...+|+.+-|..+..+++
T Consensus 278 ~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~L 311 (665)
T KOG2422|consen 278 ISSPYHVDSLLQVADIFRFQGDREMAADLIERGL 311 (665)
T ss_pred ccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 3457778899999999999999999999999998
No 343
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.12 E-value=0.17 Score=28.90 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=21.9
Q ss_pred HHHHHhhhHhhhcCCHHHHHhhhhc
Q 005603 68 EARALLGRLEYQRGNYDAALQVFQG 92 (688)
Q Consensus 68 ~a~~llg~~~~~~g~~~~A~~~~~~ 92 (688)
.+++.||+++..+|++++|...+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 3677899999999999999998864
No 344
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=92.07 E-value=1.9 Score=49.83 Aligned_cols=171 Identities=16% Similarity=0.139 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHH
Q 005603 488 LLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEIC 567 (688)
Q Consensus 488 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 567 (688)
-....+......|.+.+|.+ .-+++....+.. + ..+|.....+..++.++...|++++|+..
T Consensus 934 ~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~---~--------------~~h~~~~~~~~~La~l~~~~~d~~~Ai~~ 995 (1236)
T KOG1839|consen 934 DSPEQGQEALLEDGFSEAYE-LPESLNLLNNVM---G--------------VLHPEVASKYRSLAKLSNRLGDNQEAIAQ 995 (1236)
T ss_pred hhhhhhhhhhcccchhhhhh-hhhhhhHHHHhh---h--------------hcchhHHHHHHHHHHHHhhhcchHHHHHh
Confidence 34556666777788888877 555555433211 1 22556789999999999999999999999
Q ss_pred HHHHHhcC--------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhCCCCh
Q 005603 568 TEKAKSIE--------FYSPGSWHTTGMLFEAQSQYKEALVSFSISLAI--------EPDYIPSIISTAEILMKLGRQSM 631 (688)
Q Consensus 568 ~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~ 631 (688)
-.++.-+. |+....+.+++......++...|+..+.++..+ .|.-.....+++.++...++++
T Consensus 996 ~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d- 1074 (1236)
T KOG1839|consen 996 QRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEAD- 1074 (1236)
T ss_pred cccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHH-
Confidence 88876543 344566788888888888999999999888764 4555566778888888889998
Q ss_pred HHHHHHHHHHHHhC-----CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 005603 632 PIARSFLMNALRLE-----PT---NHDAWMNLGLISKMEGSLQQAADYFQAAYEL 678 (688)
Q Consensus 632 ~~A~~~~~~al~~~-----p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 678 (688)
.|+.+++.|+... |. ....+..++..+...+++..|....+....+
T Consensus 1075 -~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1075 -TALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred -HHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 9999999998853 21 2345666788888888888887777766554
No 345
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=91.98 E-value=29 Score=40.24 Aligned_cols=99 Identities=15% Similarity=0.157 Sum_probs=74.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHHc----C---CcHHHHHHHHHhHHHHHhHhhhcccc
Q 005603 296 HLTYALSVTGQFELLAEYVEQALPGIYNRA---ERWYILALCYSAA----G---QNEAALNLLKKDQVSRGVIQSTTSQK 365 (688)
Q Consensus 296 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~----g---~~~~A~~~~~~~l~~~~~~~~~~~~~ 365 (688)
..-.++.....|+.|+..|+++...-|+.. ++.+..|...... | .+++|+..|++.- ..+
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 549 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH----------GGV 549 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc----------CCC
Confidence 345677888899999999999988887764 6777888776643 2 4667777777663 223
Q ss_pred hhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHH
Q 005603 366 EHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEM 417 (688)
Q Consensus 366 ~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 417 (688)
.. +--|.-.+.+|...+++ ++-+++|.-+++..|++|.+
T Consensus 550 ~~--~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 550 GA--PLEYLGKALVYQRLGEY-----------NEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred CC--chHHHhHHHHHHHhhhH-----------HHHHHHHHHHHHhcCCCCcc
Confidence 22 45567777889999999 99999999999988887653
No 346
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.97 E-value=12 Score=39.50 Aligned_cols=27 Identities=30% Similarity=0.539 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHH
Q 005603 545 IATWQDLATIYMKLGSLPDAEICTEKA 571 (688)
Q Consensus 545 ~~~~~~la~~~~~~g~~~~A~~~~~~a 571 (688)
+..|..||...+..|+++-|+.+|+++
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 445566666666666666666655553
No 347
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=91.94 E-value=16 Score=38.85 Aligned_cols=79 Identities=14% Similarity=0.021 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHH-HHhcCCCChhHHHH------HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 005603 544 EIATWQDLATIYMKLGSLPDAEICTEK-AKSIEFYSPGSWHT------TGMLFEAQSQYKEALVSFSISLAIEPDYIPSI 616 (688)
Q Consensus 544 ~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~------lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 616 (688)
.+.+..+++......|....+...+.. +....|.+...... ++......|+..++.....++....|.++...
T Consensus 100 ~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~ 179 (620)
T COG3914 100 NCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVL 179 (620)
T ss_pred cchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhH
Confidence 344444454444444433333333332 44444544433222 25555555555555555555555555554444
Q ss_pred HHHHHH
Q 005603 617 ISTAEI 622 (688)
Q Consensus 617 ~~la~~ 622 (688)
..+...
T Consensus 180 ~~~~~~ 185 (620)
T COG3914 180 GALMTA 185 (620)
T ss_pred hHHHHH
Confidence 433333
No 348
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.89 E-value=1.2 Score=46.94 Aligned_cols=102 Identities=22% Similarity=0.142 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHH
Q 005603 488 LLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEIC 567 (688)
Q Consensus 488 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 567 (688)
++.+-|.-+++..+|..+++.|...+...|.+.. +.........++.+|..+.+.+.|.++
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~-------------------~~~FaK~qR~l~~CYL~L~QLD~A~E~ 416 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNY-------------------SDRFAKIQRALQVCYLKLEQLDNAVEV 416 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhh-------------------hhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4455677778889999999999999987665421 112467788899999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005603 568 TEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAI 608 (688)
Q Consensus 568 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 608 (688)
+++|-+.+|.++-.-...-.+....|.-++|+.+.......
T Consensus 417 ~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 417 YQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 99999999999988888888888899999999988776554
No 349
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=91.69 E-value=2.3 Score=49.15 Aligned_cols=174 Identities=13% Similarity=0.052 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHcCCHHHHHH------HHHHH-HhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC------C
Q 005603 417 MMYYLGLEHAVQRNVEAAFD------YAIMY-SDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGS------M 483 (688)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~------~~~~~-l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~ 483 (688)
-....+......|.+.+|.+ .+... -.+.|... ..+..++.++...+++++|+..-.++.-.... +
T Consensus 934 ~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~-~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~ 1012 (1236)
T KOG1839|consen 934 DSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVA-SKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSP 1012 (1236)
T ss_pred hhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHH-HHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCH
Confidence 34556666777778887777 44422 23467776 89999999999999999999988876532210 1
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhH
Q 005603 484 DQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPD 563 (688)
Q Consensus 484 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 563 (688)
+....+..++......++...|...+.++....-- . -..+.|....+..+++.++...++++.
T Consensus 1013 ~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L----------------s-~ge~hP~~a~~~~nle~l~~~v~e~d~ 1075 (1236)
T KOG1839|consen 1013 NTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLL----------------S-SGEDHPPTALSFINLELLLLGVEEADT 1075 (1236)
T ss_pred HHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcc----------------c-cCCCCCchhhhhhHHHHHHhhHHHHHH
Confidence 55667778888888888999999999888876211 1 112567677788899999999999999
Q ss_pred HHHHHHHHHhcCC--------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005603 564 AEICTEKAKSIEF--------YSPGSWHTTGMLFEAQSQYKEALVSFSISLAI 608 (688)
Q Consensus 564 A~~~~~~al~~~p--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 608 (688)
|+.+++.|+.... .....+..++.++...+++..|+...+....+
T Consensus 1076 al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1076 ALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred HHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 9999999988542 23455777788888888888777776665543
No 350
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=91.64 E-value=0.61 Score=47.99 Aligned_cols=78 Identities=18% Similarity=-0.025 Sum_probs=35.7
Q ss_pred cccccccCCcchHHHHHHHHHHHHHc---CChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005603 533 ITSEAPSVKNLEIATWQDLATIYMKL---GSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIE 609 (688)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 609 (688)
.+.+.+...|.....+.+.+.++++. |+.-.|+.-...++.++|....+|+.|+.++...+++.+|+.+...+....
T Consensus 396 ~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~ 475 (758)
T KOG1310|consen 396 HYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSF 475 (758)
T ss_pred HHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcC
Confidence 33444444444444444444444432 233334444444444555444555555555555555555554444443334
Q ss_pred C
Q 005603 610 P 610 (688)
Q Consensus 610 p 610 (688)
|
T Consensus 476 P 476 (758)
T KOG1310|consen 476 P 476 (758)
T ss_pred c
Confidence 4
No 351
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=91.34 E-value=33 Score=39.72 Aligned_cols=408 Identities=14% Similarity=0.006 Sum_probs=195.1
Q ss_pred hHHHHHHcCCHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHhcCccCCCCCccccCCCccCCCchHHHHHHHHHHH
Q 005603 200 LPHLWIKAGLLEEAIIAYRRALVKPWNLDPKKVASVQRDLAVTLLYGGVEARLPPELKVWGPIAPKDNVEEAILLLLILM 279 (688)
Q Consensus 200 l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~eea~~~l~~~~ 279 (688)
.|..+.....|+.|+..|||+-...|.-.....+ +-+.+..++....+... ...+++|+.-+
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~---- 542 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEA--QFRLGITLLEKASEQGD------------PRDFTQALSEF---- 542 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHH--HHHhhHHHHHHHHhcCC------------hHHHHHHHHHH----
Confidence 4456778899999999999999885432222222 22233333433222111 13456666544
Q ss_pred HHHHhhhcCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcC-----CcHHHHHHHHHhHHH
Q 005603 280 EKVASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAG-----QNEAALNLLKKDQVS 354 (688)
Q Consensus 280 ~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~~l~~ 354 (688)
..+-..|-.|--|.-.+.+|.+.|++++-++++.-+++..|+.|.+-...-.+-++.- +...|....--++
T Consensus 543 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 618 (932)
T PRK13184 543 --SYLHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLAL-- 618 (932)
T ss_pred --HHhcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 2345567778888889999999999999999999999999888754332222222111 0111111111111
Q ss_pred HHhHhhhcccchhhHHHHHHHHHHHHHhhhhhc-----cc-hHHh-----------hHHHHHHHHHHHHHHHcCCCCHHH
Q 005603 355 RGVIQSTTSQKEHFLAEAYKFLGICYGNVARKS-----IS-DTER-----------VFFQKEALESLNCAFLNEREDPEM 417 (688)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~-----~~-~~~~-----------~~~~~~A~~~~~~al~~~p~~~~~ 417 (688)
...+..... ...-..+-.++.+..... .+ ...+ .+..---...++++....| ..+
T Consensus 619 ----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 690 (932)
T PRK13184 619 ----WIAPEKISS--REEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDLRD--YRA 690 (932)
T ss_pred ----HhCcccccc--hHHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhccc--HHH
Confidence 111111000 000000000000000000 00 0000 0000122334455554443 366
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh-----cCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCc
Q 005603 418 MYYLGLEHAVQRNVEAAFDYAIMYSDT-----VAGNSG-------RGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQ 485 (688)
Q Consensus 418 ~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 485 (688)
+.+.-.+....|+++-+.+.....-+. .|.+.+ ..|..-..++.....++++.+.+.. ..| ..
T Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~ 765 (932)
T PRK13184 691 LADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDN---TDP--TL 765 (932)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhh---CCH--HH
Confidence 666666778888887766655444321 111110 1111112233344455555543322 222 11
Q ss_pred H-HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHH
Q 005603 486 L-ELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDA 564 (688)
Q Consensus 486 ~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 564 (688)
. .++...+.-....++.+. +-.+.+.+...+. ..............+|....++++|
T Consensus 766 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (932)
T PRK13184 766 ILYAFDLFAIQALLDEEGES-IIQLLQLIYDYVS---------------------EEERHDHLLVYEIQAHLWNRDLKKA 823 (932)
T ss_pred HHHHHHHHHHHHHHhccchH-HHHHHHHHHhccC---------------------ChhhhhhhhHHHHHHHHHhccHHHH
Confidence 1 111111111122222221 1111222221110 0011233445566778888899999
Q ss_pred HHHHHHHHh--cCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 005603 565 EICTEKAKS--IEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNAL 642 (688)
Q Consensus 565 ~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al 642 (688)
-+.+..--. ...+...++...|..+...++-+-|..+|..+.+-.+ .+.+| .+..+.-.|... +...++++-
T Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~--~~~~~~~~~- 897 (932)
T PRK13184 824 YKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCREDAL-FPRSL--DGDIFDYLGKIS--DNLSWWEKK- 897 (932)
T ss_pred HHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhcccccc-Ccchh--hccccchhcccc--ccccHHHHH-
Confidence 888743211 1234566788888888888888888888887763211 12222 234444555555 555444432
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 005603 643 RLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYEL 678 (688)
Q Consensus 643 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 678 (688)
..+..+...+.-.|+.++- ..|+.+...
T Consensus 898 -------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 925 (932)
T PRK13184 898 -------QLLRQKFLYFHCLGDSEER-DKYRQAYLS 925 (932)
T ss_pred -------HHHHHHHHHHHHhCChhHh-HHHHHHHHH
Confidence 3344555566667776666 566666543
No 352
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.34 E-value=8.6 Score=39.93 Aligned_cols=158 Identities=13% Similarity=-0.069 Sum_probs=100.6
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHH----------HHhH
Q 005603 289 WDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVS----------RGVI 358 (688)
Q Consensus 289 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----------~~~~ 358 (688)
.+...+..++.+|..+ ..++-...++++++.+.++...-..|+..|.. ++-..+...|.++++. ++.-
T Consensus 97 e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evW 174 (711)
T COG1747 97 ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVW 174 (711)
T ss_pred chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHH
Confidence 4566788899999998 77888899999999999999888889988777 8999999999999811 0111
Q ss_pred hhhcccchhhHHHHHHHHHHHHHhhhhhccc--------hHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---
Q 005603 359 QSTTSQKEHFLAEAYKFLGICYGNVARKSIS--------DTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAV--- 427 (688)
Q Consensus 359 ~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~--------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--- 427 (688)
..++.--.......+..+-.+....|..... .+....++++|+..+...++.+..+..+.-.+...+..
T Consensus 175 eKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~ 254 (711)
T COG1747 175 EKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYR 254 (711)
T ss_pred HHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhc
Confidence 1111100000001111111111111111000 12224455999999999999988887776666555544
Q ss_pred -----------------cCCHHHHHHHHHHHHhhcCCC
Q 005603 428 -----------------QRNVEAAFDYAIMYSDTVAGN 448 (688)
Q Consensus 428 -----------------~g~~~~A~~~~~~~l~~~p~~ 448 (688)
-.++..++.-|++.+..+.++
T Consensus 255 ~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 255 GHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred cchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 567788888888888776554
No 353
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=91.34 E-value=16 Score=36.00 Aligned_cols=262 Identities=15% Similarity=0.086 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHHc--CCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhcCCCc-HHHHHHHHHHH-HH
Q 005603 398 KEALESLNCAFLN--ERED--------PEMMYYLGLEHAVQRNVEAAFDYAIMYS---DTVAGNS-GRGWKLLALIL-SA 462 (688)
Q Consensus 398 ~~A~~~~~~al~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~~l---~~~p~~~-~~~~~~la~~~-~~ 462 (688)
++++..|...+.. .|.. ......++..+.+.|+..+-.+.....- ..-+... +.....+.... ..
T Consensus 21 ~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlvR~Lvd~~~~~ 100 (411)
T KOG1463|consen 21 EEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLVRSLVDMFLKI 100 (411)
T ss_pred hhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC
Confidence 7788888877753 1211 3466789999999999877655544432 2211111 02222222222 22
Q ss_pred cCCHHHHHHHHHHHHhhcCC----CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccc
Q 005603 463 DQRLKDAQSIVDFSLDEAGS----MDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAP 538 (688)
Q Consensus 463 ~~~~~~A~~~~~~al~~~p~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (688)
.+..+.-+.++...++.... .-...+-..+..+|...++|.+|+.....++.-... +
T Consensus 101 ~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKK-------------------l 161 (411)
T KOG1463|consen 101 DDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKK-------------------L 161 (411)
T ss_pred CCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh-------------------c
Confidence 23444555555555543321 011233456788899999999999988887775443 2
Q ss_pred cCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC-----CCC--hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-
Q 005603 539 SVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIE-----FYS--PGSWHTTGMLFEAQSQYKEALVSFSISLAIEP- 610 (688)
Q Consensus 539 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p- 610 (688)
++.+.-.+++..-..+|....+..+|...+..|-... |.. +..=..-|.++....+|.-|..+|-++++-..
T Consensus 162 DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s 241 (411)
T KOG1463|consen 162 DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDS 241 (411)
T ss_pred ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccc
Confidence 4445556667777788888888888888777665432 111 11223345666667888888888888877532
Q ss_pred --CCHHHHH---HHHHHHHHhCCCChHHHHHH--HHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcccC
Q 005603 611 --DYIPSII---STAEILMKLGRQSMPIARSF--LMNALRLEPTNHDAWMNLGLISKM--EGSLQQAADYFQAAYELKL 680 (688)
Q Consensus 611 --~~~~~~~---~la~~~~~~g~~~~~~A~~~--~~~al~~~p~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~l~p 680 (688)
++..+.. .+-.+-...+..+ +.-.. -..+++....+.++....+..+.. +.+|+.|+..|+.=+.-+|
T Consensus 242 ~~~~v~A~~sLKYMlLcKIMln~~d--dv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 242 LDDDVKALTSLKYMLLCKIMLNLPD--DVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCHH--HHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 2233332 2223333344444 33222 234455555566677777776643 3467777777776655443
No 354
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=91.23 E-value=0.55 Score=44.95 Aligned_cols=87 Identities=17% Similarity=0.279 Sum_probs=75.4
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHhCCCChHHHHHHHHHHHHhC
Q 005603 567 CTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIIS-TAEILMKLGRQSMPIARSFLMNALRLE 645 (688)
Q Consensus 567 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~~~A~~~~~~al~~~ 645 (688)
.|.++....|+++..|...+......|.+.+--..|.++++.+|.+++.|.. .+.-+...++.+ .++..|.++++.+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~--s~Ra~f~~glR~N 172 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIE--SSRAMFLKGLRMN 172 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHH--HHHHHHHhhhccC
Confidence 4555666788999999999988888999999999999999999999999987 555667788888 9999999999999
Q ss_pred CCCHHHHHHH
Q 005603 646 PTNHDAWMNL 655 (688)
Q Consensus 646 p~~~~~~~~l 655 (688)
|++|.+|+..
T Consensus 173 ~~~p~iw~ey 182 (435)
T COG5191 173 SRSPRIWIEY 182 (435)
T ss_pred CCCchHHHHH
Confidence 9999988753
No 355
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=91.01 E-value=15 Score=35.16 Aligned_cols=215 Identities=15% Similarity=0.025 Sum_probs=108.6
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhh---cccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHH
Q 005603 329 YILALCYSAAGQNEAALNLLKKDQVSRGVIQST---TSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLN 405 (688)
Q Consensus 329 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 405 (688)
..+|.-....+++++|+..|.+++ ..- ....-+....+...++..|...|++... .+-+...+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL------~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l--------~~~i~~sr 72 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRIL------GKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSL--------GDTITSSR 72 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHh------cCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchH--------HHHHHhhH
Confidence 556777888999999999999997 110 0000111134566777888877776111 11111111
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC---
Q 005603 406 CAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGS--- 482 (688)
Q Consensus 406 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--- 482 (688)
.+ |... --.+..+..+..++..|..+ +. ++.-+.++...++...+
T Consensus 73 e~----------m~~f--------tk~k~~KiirtLiekf~~~~-ds-------------l~dqi~v~~~~iewA~rEkr 120 (421)
T COG5159 73 EA----------MEDF--------TKPKITKIIRTLIEKFPYSS-DS-------------LEDQIKVLTALIEWADREKR 120 (421)
T ss_pred HH----------HHHh--------cchhHHHHHHHHHHhcCCCC-cc-------------HHHHHHHHHHHHHHHHHHHH
Confidence 11 1110 01122334444455555444 22 22222222222221110
Q ss_pred -CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCCh
Q 005603 483 -MDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSL 561 (688)
Q Consensus 483 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 561 (688)
.-...+-..++.++...|+|.+|+.....++.-... .++.+.-..++..-..+|....+.
T Consensus 121 ~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk-------------------~DDK~~Li~vhllESKvyh~irnv 181 (421)
T COG5159 121 KFLRLELECKLIYLLYKTGKYSDALALINPLLHELKK-------------------YDDKINLITVHLLESKVYHEIRNV 181 (421)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh-------------------hcCccceeehhhhhHHHHHHHHhh
Confidence 011223345566777778888877777666654333 234444556666666677776666
Q ss_pred hHHHHHHHHHHhcC-----CCChh--HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005603 562 PDAEICTEKAKSIE-----FYSPG--SWHTTGMLFEAQSQYKEALVSFSISLAI 608 (688)
Q Consensus 562 ~~A~~~~~~al~~~-----p~~~~--~~~~lg~~~~~~g~~~~A~~~~~~al~~ 608 (688)
.++...+..+.... |.... .-..-|..++...+|.-|-.+|-++++-
T Consensus 182 ~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 182 SKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred hhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 66666665544321 21111 1122344555666777777777777654
No 356
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.97 E-value=4.4 Score=32.10 Aligned_cols=59 Identities=12% Similarity=-0.003 Sum_probs=41.6
Q ss_pred HHcCCHHHHHHHHHHHHhhcCCC-------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Q 005603 461 SADQRLKDAQSIVDFSLDEAGSM-------DQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQ 519 (688)
Q Consensus 461 ~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 519 (688)
...|+|..|++.+.+.++..... ....++..+|.++...|++++|+..+++++.+....
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 45566666666666655433211 123566788999999999999999999999987663
No 357
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=90.83 E-value=0.72 Score=28.83 Aligned_cols=33 Identities=12% Similarity=0.148 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHcccCCC
Q 005603 650 DAWMNLGLISKMEGSLQQAADY--FQAAYELKLSA 682 (688)
Q Consensus 650 ~~~~~lg~~~~~~g~~~~A~~~--~~~al~l~p~~ 682 (688)
+.|+.+|..+...|++++|+.. |.-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 5678888888999999999999 44776666653
No 358
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.53 E-value=2.1 Score=33.94 Aligned_cols=66 Identities=11% Similarity=0.073 Sum_probs=47.1
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 005603 495 LQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSI 574 (688)
Q Consensus 495 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 574 (688)
...+.|++..|++.+.+.+.......... .......++.++|.++...|++++|+..+++++.+
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~----------------~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSS----------------SNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccch----------------hhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34678999999999999998755521110 00123556777888888888888888888888876
Q ss_pred CC
Q 005603 575 EF 576 (688)
Q Consensus 575 ~p 576 (688)
..
T Consensus 71 Ar 72 (94)
T PF12862_consen 71 AR 72 (94)
T ss_pred HH
Confidence 54
No 359
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=90.40 E-value=0.68 Score=29.31 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=29.9
Q ss_pred HHHHHhhhhHHhhCChHHHHHHHHHHHHHHHhcCC
Q 005603 142 EAILLKAKSLEELGHCKEAAKECKIILDIVESGLP 176 (688)
Q Consensus 142 e~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 176 (688)
+++..+|.+-...++|++|+.-|++.|++.++.+|
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~ 36 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP 36 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 45677888888899999999999999998877654
No 360
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.09 E-value=20 Score=37.94 Aligned_cols=160 Identities=11% Similarity=-0.084 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHc------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------------------
Q 005603 396 FQKEALESLNCAFLN------------EREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDT------------------- 444 (688)
Q Consensus 396 ~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------------------- 444 (688)
-+++|...|.-+... .|.+.+.+..++.+...+|+.+-|.+..++++=.
T Consensus 253 sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~ 332 (665)
T KOG2422|consen 253 SYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLP 332 (665)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCc
Confidence 336677666666532 3667889999999999999999888888777521
Q ss_pred --cCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHhh
Q 005603 445 --VAGNS--GRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQ-IAQEQPKQAIGTYRILLAMIQAQ 519 (688)
Q Consensus 445 --~p~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~ 519 (688)
.|.+. .-+++..-..+.+.|-+..|.++++-.+..+|. .++.....+..+| .+..+|.=-++.++..-...
T Consensus 333 y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~-eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n--- 408 (665)
T KOG2422|consen 333 YIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPS-EDPLGILYLIDIYALRAREYQWIIELSNEPENMN--- 408 (665)
T ss_pred ccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCc-CCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhc---
Confidence 12221 012233345567789999999999999999994 3555555555444 34555555555554432210
Q ss_pred HHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCC---hhHHHHHHHHHHhcCCC
Q 005603 520 RELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGS---LPDAEICTEKAKSIEFY 577 (688)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~ 577 (688)
.+..-| +...-..+|..|..... -..|...+.+|+...|.
T Consensus 409 -----------------~l~~~P-N~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 409 -----------------KLSQLP-NFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred -----------------cHhhcC-CchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 001112 12333456666666555 56788889999988873
No 361
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=89.85 E-value=24 Score=35.67 Aligned_cols=108 Identities=15% Similarity=-0.001 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHH
Q 005603 486 LELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAE 565 (688)
Q Consensus 486 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 565 (688)
+..|+.+..++...|+...-...+...+....- -.+....+...+.+-..|...+.|+.|.
T Consensus 169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtL-------------------rhd~e~qavLiN~LLr~yL~n~lydqa~ 229 (493)
T KOG2581|consen 169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATL-------------------RHDEEGQAVLINLLLRNYLHNKLYDQAD 229 (493)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhh-------------------cCcchhHHHHHHHHHHHHhhhHHHHHHH
Confidence 345556666666666655555555444443111 0112223555566667777778888887
Q ss_pred HHHHHHHhcC--CC--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005603 566 ICTEKAKSIE--FY--SPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDY 612 (688)
Q Consensus 566 ~~~~~al~~~--p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 612 (688)
....+..--. .+ -+..++.+|.+..-+++|..|.+++-+|+...|.+
T Consensus 230 ~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 230 KLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 7766654211 11 13345667888888888888888888888888864
No 362
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=89.62 E-value=2.2 Score=40.63 Aligned_cols=72 Identities=15% Similarity=0.120 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 005603 547 TWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIIS 618 (688)
Q Consensus 547 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 618 (688)
...++=..+...++++.|..+.++.+.++|+++.-+.-.|.+|.++|.+.-|+..+...++..|+++.+-..
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~i 254 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMI 254 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHH
Confidence 334455566777778888888888888888877777777888888888888888777777777777655443
No 363
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=89.61 E-value=4.5 Score=40.72 Aligned_cols=101 Identities=16% Similarity=0.089 Sum_probs=72.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCc-----chHHHHHHHHHHHHHcCChhHHHHHH
Q 005603 494 VLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKN-----LEIATWQDLATIYMKLGSLPDAEICT 568 (688)
Q Consensus 494 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~ 568 (688)
..++++++|..|..-|+.++++..+.. .+.+.....+ ....+-..+..||..+++.+-|+...
T Consensus 184 s~~yrqk~ya~Aa~rF~taLelcskg~------------a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~ 251 (569)
T PF15015_consen 184 SSCYRQKKYAVAAGRFRTALELCSKGA------------ALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHS 251 (569)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhh------------hccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHH
Confidence 345566666667777777766654421 1111111111 12344567899999999999999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005603 569 EKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISL 606 (688)
Q Consensus 569 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 606 (688)
.+.+.++|....-+...|.++..+.+|.+|...+.-+.
T Consensus 252 hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 252 HRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred hhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987765543
No 364
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=89.60 E-value=1.3 Score=45.18 Aligned_cols=71 Identities=23% Similarity=0.293 Sum_probs=50.8
Q ss_pred hhhHhhhcCCHHHHHhhhhcCCCCccccchhhhhhhhcccccccCCCCCCCCCCCCCCCcchhHHHHHHHHHHHhhhhHH
Q 005603 73 LGRLEYQRGNYDAALQVFQGIDIVSLTPRMTRAVVERTRPLRKHRSKGEKADSVPPPGLMSLHSISLLLEAILLKAKSLE 152 (688)
Q Consensus 73 lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 152 (688)
|-|++...|+|..|+.+++.+++... .+. ..+ |+ .| .-.+|--|-||.
T Consensus 128 LlRvh~LLGDY~~Alk~l~~idl~~~------~l~----------------~~V-~~----~~-----is~~YyvGFayl 175 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENIDLNKK------GLY----------------TKV-PA----CH-----ISTYYYVGFAYL 175 (404)
T ss_pred HHHHHHhccCHHHHHHHhhccCcccc------hhh----------------ccC-cc----hh-----eehHHHHHHHHH
Confidence 34899999999999999998873221 111 111 11 11 124567799999
Q ss_pred hhCChHHHHHHHHHHHHHHHhcC
Q 005603 153 ELGHCKEAAKECKIILDIVESGL 175 (688)
Q Consensus 153 ~~g~~~~A~~~~~~~l~~~~~~~ 175 (688)
.+++|.+|++.|..+|-.+.+.-
T Consensus 176 MlrRY~DAir~f~~iL~yi~r~k 198 (404)
T PF10255_consen 176 MLRRYADAIRTFSQILLYIQRTK 198 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999988776543
No 365
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.59 E-value=3.1 Score=37.78 Aligned_cols=71 Identities=20% Similarity=0.117 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC----cHHHHHHHHHHHHHcCCHHHHH
Q 005603 398 KEALESLNCAFLNE-REDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGN----SGRGWKLLALILSADQRLKDAQ 470 (688)
Q Consensus 398 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~~la~~~~~~~~~~~A~ 470 (688)
++|...|-++-... -++++..+.+|..|. ..+.++++..+.+++++.+.+ + +++..|+.++...|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~-eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNP-EILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHHHHhcchhhhh
Confidence 45555554443211 134555555555554 455566666666666553322 3 55666666666666666553
No 366
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=89.43 E-value=22 Score=34.54 Aligned_cols=98 Identities=13% Similarity=0.072 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----cCCCcHHHHHHHHHHHHHcCCHH-HHHH
Q 005603 398 KEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDT-----VAGNSGRGWKLLALILSADQRLK-DAQS 471 (688)
Q Consensus 398 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~~la~~~~~~~~~~-~A~~ 471 (688)
++|++.+... +..+.+.|++..|.+...-.++. .+.+. .....++.++...+.-+ +-..
T Consensus 7 ~eAidLL~~G--------------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~-~~~~rl~~l~~~~~~~~p~r~~ 71 (260)
T PF04190_consen 7 DEAIDLLYSG--------------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDE-ESIARLIELISLFPPEEPERKK 71 (260)
T ss_dssp HHHHHHHHHH--------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SH-HHHHHHHHHHHHS-TT-TTHHH
T ss_pred HHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCCCCcchHHH
Confidence 7777665544 44555566665555554444332 12222 33345555554443222 2333
Q ss_pred HHHHHHhhc----CCCCcHHHHHHHHHHHHHcCChHHHHHHHH
Q 005603 472 IVDFSLDEA----GSMDQLELLRLKAVLQIAQEQPKQAIGTYR 510 (688)
Q Consensus 472 ~~~~al~~~----p~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 510 (688)
+.+++++-. ++..++.++..+|..+.+.|++.+|..+|-
T Consensus 72 fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 72 FIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp HHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 344444322 222567888888888888888888877764
No 367
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.36 E-value=11 Score=36.64 Aligned_cols=65 Identities=11% Similarity=0.075 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005603 544 EIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAI 608 (688)
Q Consensus 544 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 608 (688)
...++..++..+...|+++.++..+++.+..+|.+-..|..+-..|...|+...|+..|++.-+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999887653
No 368
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.14 E-value=3.3 Score=37.58 Aligned_cols=76 Identities=20% Similarity=0.191 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHH
Q 005603 467 KDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIA 546 (688)
Q Consensus 467 ~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (688)
++|...|-++-. .|..+++++.+.+|..|. ..+.++++..+.+++++.+.. ...+++
T Consensus 123 ~~A~~~fL~~E~-~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~---------------------~~~n~e 179 (203)
T PF11207_consen 123 QEALRRFLQLEG-TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPD---------------------DNFNPE 179 (203)
T ss_pred HHHHHHHHHHcC-CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCC---------------------CCCCHH
Confidence 445544444322 223356666777766665 556777777777777764431 133577
Q ss_pred HHHHHHHHHHHcCChhHHH
Q 005603 547 TWQDLATIYMKLGSLPDAE 565 (688)
Q Consensus 547 ~~~~la~~~~~~g~~~~A~ 565 (688)
++..|+.++...|+++.|-
T Consensus 180 il~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 180 ILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHHhcchhhhh
Confidence 7777777777777777664
No 369
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.14 E-value=0.54 Score=26.83 Aligned_cols=24 Identities=17% Similarity=0.201 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 005603 650 DAWMNLGLISKMEGSLQQAADYFQ 673 (688)
Q Consensus 650 ~~~~~lg~~~~~~g~~~~A~~~~~ 673 (688)
.+.+.+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456778888888888888887765
No 370
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=88.63 E-value=45 Score=37.16 Aligned_cols=253 Identities=9% Similarity=-0.061 Sum_probs=138.0
Q ss_pred HHhhhcCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH---HHHcCCcHHHHHHHHHhHHHHHhH
Q 005603 282 VASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALC---YSAAGQNEAALNLLKKDQVSRGVI 358 (688)
Q Consensus 282 ~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~---~~~~g~~~~A~~~~~~~l~~~~~~ 358 (688)
.-+...+.+...+..|...+.+.|++++....-.++..+.|..+..|.....- ....+.-.++...|++++
T Consensus 104 ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal------ 177 (881)
T KOG0128|consen 104 EELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKAL------ 177 (881)
T ss_pred HHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHh------
Confidence 34445566777888888999999998876666666666666666666654433 234467778888999987
Q ss_pred hhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHcCCH
Q 005603 359 QSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNER-------EDPEMMYYLGLEHAVQRNV 431 (688)
Q Consensus 359 ~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~la~~~~~~g~~ 431 (688)
...+. ...|...+......+.. ..+.+.++.-...|.+++..-- .....+..+-..|...-..
T Consensus 178 --~dy~~----v~iw~e~~~y~~~~~~~----~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~ 247 (881)
T KOG0128|consen 178 --GDYNS----VPIWEEVVNYLVGFGNV----AKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQ 247 (881)
T ss_pred --ccccc----chHHHHHHHHHHhcccc----ccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHH
Confidence 11111 23333333333322221 1112222677777777764321 2234455555566665555
Q ss_pred HHHHHHHHHHHhhcCCCcH--HHHHHHH--H-HHHHcCCHHHHHHHHHHHH-------hhcCCCCcHHHHHHHHHHHHHc
Q 005603 432 EAAFDYAIMYSDTVAGNSG--RGWKLLA--L-ILSADQRLKDAQSIVDFSL-------DEAGSMDQLELLRLKAVLQIAQ 499 (688)
Q Consensus 432 ~~A~~~~~~~l~~~p~~~~--~~~~~la--~-~~~~~~~~~~A~~~~~~al-------~~~p~~~~~~~~~~la~~~~~~ 499 (688)
++-+.++...+...-+..+ ..|.... . ......+++.|..-..+.+ ...+ .....|..+.......
T Consensus 248 ~qv~a~~~~el~~~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~--~~~q~~~~yidfe~~~ 325 (881)
T KOG0128|consen 248 RQVIALFVRELKQPLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEP--IKDQEWMSYIDFEKKS 325 (881)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhc
Confidence 6777777766655321110 1111111 1 2234455666655544433 3333 3344455666666778
Q ss_pred CChHHHHHHHHHHHHHHHhhHHhhhhccc----------cccccccccccCCcchHHHHHHHH
Q 005603 500 EQPKQAIGTYRILLAMIQAQRELHSKNFH----------KTKYITSEAPSVKNLEIATWQDLA 552 (688)
Q Consensus 500 g~~~~A~~~~~~al~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~la 552 (688)
|.+-.-...+++++.-.+...+.+..-.. .+...+.+.+...|....+|...-
T Consensus 326 G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~ral 388 (881)
T KOG0128|consen 326 GDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRAL 388 (881)
T ss_pred CCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHH
Confidence 88888888888888776665444322110 223344455566665555554433
No 371
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=88.39 E-value=31 Score=34.97 Aligned_cols=131 Identities=16% Similarity=0.164 Sum_probs=88.5
Q ss_pred HhcCCHHHHHHHHHHhcCC-CCC--------CHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhh-cccchhhHHH
Q 005603 302 SVTGQFELLAEYVEQALPG-IYN--------RAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQST-TSQKEHFLAE 371 (688)
Q Consensus 302 ~~~g~~~~A~~~~~~~l~~-~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~-~~~~~~~~~~ 371 (688)
..+.++.+|..+-+..+.. .-. ....|+.+..+|...|+...-...+...+ ... -.++..-.+.
T Consensus 137 ~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~l------rtAtLrhd~e~qav 210 (493)
T KOG2581|consen 137 IDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALL------RTATLRHDEEGQAV 210 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH------HHhhhcCcchhHHH
Confidence 3456777777776654421 111 23678888888888998666655555554 111 1122222356
Q ss_pred HHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHH--HcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 005603 372 AYKFLGICYGNVARKSISDTERVFFQKEALESLNCAF--LNER--EDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAG 447 (688)
Q Consensus 372 ~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al--~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 447 (688)
...++-..|...+.+ ++|-....+.. .... .....++.+|.+..-+++|..|.+++-+++...|.
T Consensus 211 LiN~LLr~yL~n~ly-----------dqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 211 LINLLLRNYLHNKLY-----------DQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHHHHhhhHHH-----------HHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 667777888888888 88888777765 1111 22456788999999999999999999999999997
Q ss_pred Cc
Q 005603 448 NS 449 (688)
Q Consensus 448 ~~ 449 (688)
+.
T Consensus 280 ~~ 281 (493)
T KOG2581|consen 280 HA 281 (493)
T ss_pred hh
Confidence 54
No 372
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.22 E-value=41 Score=36.23 Aligned_cols=81 Identities=7% Similarity=-0.021 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 005603 397 QKEALESLNCAFLNERED------PEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQ 470 (688)
Q Consensus 397 ~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~ 470 (688)
+..+++.|+..+..-|.| ......++.+|....+.|.|.++++++-+.+|.++ -.-...-.+....+.-++|+
T Consensus 370 Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~-l~q~~~~~~~~~E~~Se~AL 448 (872)
T KOG4814|consen 370 YVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSP-LCQLLMLQSFLAEDKSEEAL 448 (872)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccH-HHHHHHHHHHHHhcchHHHH
Confidence 399999999998776655 45667799999999999999999999999999998 77777778888889999999
Q ss_pred HHHHHHHh
Q 005603 471 SIVDFSLD 478 (688)
Q Consensus 471 ~~~~~al~ 478 (688)
........
T Consensus 449 ~~~~~~~s 456 (872)
T KOG4814|consen 449 TCLQKIKS 456 (872)
T ss_pred HHHHHHHh
Confidence 98877664
No 373
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=88.15 E-value=26 Score=33.93 Aligned_cols=42 Identities=12% Similarity=-0.052 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHh
Q 005603 309 LLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKD 351 (688)
Q Consensus 309 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 351 (688)
.|++.- +.-.....+++.+..+|..+.+.|++.+|..+|-..
T Consensus 75 ~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 75 AAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp HHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred HHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence 344444 333344567899999999999999999888776544
No 374
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=88.10 E-value=3.8 Score=39.09 Aligned_cols=74 Identities=19% Similarity=0.061 Sum_probs=62.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005603 582 WHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGL 657 (688)
Q Consensus 582 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 657 (688)
..++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+. .|++.++..++..|+.+.+-.....
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~--vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYH--VALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCch--hhHHHHHHHHHhCCCchHHHHHHHH
Confidence 3444556788899999999999999999999999999999999999988 9999999999999998876554443
No 375
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.03 E-value=2.5 Score=40.82 Aligned_cols=64 Identities=14% Similarity=0.094 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 005603 579 PGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRL 644 (688)
Q Consensus 579 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~ 644 (688)
..++..++..+...|+++.++..+++.+..+|-+-..|..+-..|...|+.. .|+..|++.-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~--~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQS--AAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCch--HHHHHHHHHHHH
Confidence 4456666777777777777777777777777777777777777777777776 777777666553
No 376
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=87.25 E-value=0.92 Score=28.71 Aligned_cols=31 Identities=29% Similarity=0.384 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcccC
Q 005603 650 DAWMNLGLISKMEGSLQQAADYFQAAYELKL 680 (688)
Q Consensus 650 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 680 (688)
+++..||.+-...++|++|+..|++++++..
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQE 32 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 4677899999999999999999999988653
No 377
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=86.78 E-value=2.5 Score=41.58 Aligned_cols=62 Identities=18% Similarity=0.127 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005603 564 AEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMK 625 (688)
Q Consensus 564 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 625 (688)
|+.+|.+|..+.|.+...|+.+|.++...|+.=.|+-+|-+++-.....+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999998766668888999888887
No 378
>PF12854 PPR_1: PPR repeat
Probab=86.61 E-value=1.6 Score=26.85 Aligned_cols=28 Identities=14% Similarity=0.143 Sum_probs=17.8
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005603 289 WDAEIMDHLTYALSVTGQFELLAEYVEQ 316 (688)
Q Consensus 289 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 316 (688)
.|..+|..+...+.+.|+.++|.+.|++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 4555666666666666666666666654
No 379
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=86.43 E-value=46 Score=34.90 Aligned_cols=231 Identities=9% Similarity=-0.038 Sum_probs=130.3
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHH
Q 005603 410 NEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELL 489 (688)
Q Consensus 410 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 489 (688)
..|-+...+..+-.++....++.-....+.+++..... . .+++.++.+|... ..++-..++++..+.+- ++...-
T Consensus 61 ~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~-k-mal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ 135 (711)
T COG1747 61 KQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGES-K-MALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIG 135 (711)
T ss_pred hccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcch-H-HHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHH
Confidence 34555556666666676666777777778888776544 3 7888888888887 55667778888887776 666667
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHH
Q 005603 490 RLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTE 569 (688)
Q Consensus 490 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 569 (688)
..++..|.. ++...+...|.+++...-.. .....--++|..+-..- -.+.+.-.....
T Consensus 136 ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~-------------------~q~~~i~evWeKL~~~i--~dD~D~fl~l~~ 193 (711)
T COG1747 136 RELADKYEK-IKKSKAAEFFGKALYRFIPR-------------------RQNAAIKEVWEKLPELI--GDDKDFFLRLQK 193 (711)
T ss_pred HHHHHHHHH-hchhhHHHHHHHHHHHhcch-------------------hhhhhHHHHHHHHHHhc--cccHHHHHHHHH
Confidence 777777766 88888888888887753210 00111233444332211 123333333333
Q ss_pred HHHhcCC-CChhHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 005603 570 KAKSIEF-YSPGSW-HTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPT 647 (688)
Q Consensus 570 ~al~~~p-~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~ 647 (688)
+.-.... ....+. ..+-.-|....++++|+..+...++.+..+..+.-++...+...-+-. .
T Consensus 194 kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~--~-------------- 257 (711)
T COG1747 194 KIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGH--S-------------- 257 (711)
T ss_pred HHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccc--h--------------
Confidence 3222211 112222 222234555667888888888777777777666665555443321111 1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccCCCC
Q 005603 648 NHDAWMNLGLISKMEGSLQQAADYFQAAYELKLSAP 683 (688)
Q Consensus 648 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 683 (688)
+.+-|.....+-..-.++.+++.-|++.+.....+-
T Consensus 258 ~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGnF 293 (711)
T COG1747 258 QLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGNF 293 (711)
T ss_pred hHHHHHHhcchhhccccHHHHHHHHHHHheeccCce
Confidence 111222222333334456777777777766665543
No 380
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=86.26 E-value=2.8 Score=26.20 Aligned_cols=21 Identities=14% Similarity=0.316 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHH
Q 005603 417 MMYYLGLEHAVQRNVEAAFDY 437 (688)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~ 437 (688)
.++.+|..+...|++++|++.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 445555555666666666655
No 381
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=85.50 E-value=34 Score=32.57 Aligned_cols=30 Identities=13% Similarity=0.148 Sum_probs=24.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcCCCCC
Q 005603 294 MDHLTYALSVTGQFELLAEYVEQALPGIYN 323 (688)
Q Consensus 294 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 323 (688)
+..++.+..+.|+|++.+.++.+++...++
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~e 33 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPE 33 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCC
Confidence 456788888999999999999998877654
No 382
>PF13041 PPR_2: PPR repeat family
Probab=85.44 E-value=2.8 Score=28.37 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=30.4
Q ss_pred HHHHHHcCCHHHHHHHHHHhhCCCCCCChhhHHHHHH
Q 005603 201 PHLWIKAGLLEEAIIAYRRALVKPWNLDPKKVASVQR 237 (688)
Q Consensus 201 ~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~~~~ 237 (688)
-..|.+.|++++|..+|+++.+....++..++..+..
T Consensus 10 i~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~ 46 (50)
T PF13041_consen 10 ISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILIN 46 (50)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3568899999999999999999877778777765443
No 383
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.76 E-value=3.3 Score=27.23 Aligned_cols=25 Identities=32% Similarity=0.242 Sum_probs=22.6
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHhH
Q 005603 328 WYILALCYSAAGQNEAALNLLKKDQ 352 (688)
Q Consensus 328 ~~~la~~~~~~g~~~~A~~~~~~~l 352 (688)
.+.+|..|..+|+.+.|..++++++
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHH
Confidence 3678999999999999999999997
No 384
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=84.68 E-value=5.5 Score=29.90 Aligned_cols=57 Identities=11% Similarity=0.092 Sum_probs=35.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHH---HHHHHcCCHHHHHHHHHHHHh
Q 005603 421 LGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLA---LILSADQRLKDAQSIVDFSLD 478 (688)
Q Consensus 421 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la---~~~~~~~~~~~A~~~~~~al~ 478 (688)
-|.-++..++.++|+..++++++..++.+ .-+..+| .++...|+|.+.+.+..+-++
T Consensus 12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~-~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 12 KGLKLYHQNETQQALQKWRKALEKITDRE-DRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHhccchHHHHHHHHHHHHhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777777777777777776665 5554444 456667777776666554443
No 385
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=83.92 E-value=46 Score=32.70 Aligned_cols=203 Identities=14% Similarity=0.005 Sum_probs=112.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHH
Q 005603 413 EDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLK 492 (688)
Q Consensus 413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l 492 (688)
+....-+.+-....+..+..+-++....+++++|... .++..++.- ...-..+|+.+++++++... ..+..
T Consensus 182 D~~r~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA-~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e------~~yr~ 252 (556)
T KOG3807|consen 182 DFLRPEDEIMQKAWRERNPPARIKAAYQALEINNECA-TAYVLLAEE--EATTIVDAERLFKQALKAGE------TIYRQ 252 (556)
T ss_pred cccChHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhh-hHHHhhhhh--hhhhHHHHHHHHHHHHHHHH------HHHhh
Confidence 3344455666667778888888888899999999887 887777653 23346678888888876543 12222
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 005603 493 AVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAK 572 (688)
Q Consensus 493 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 572 (688)
.......|...+|.. +. +......+-..++.+-.++|+..+|++.++...
T Consensus 253 sqq~qh~~~~~da~~------rR------------------------Dtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ 302 (556)
T KOG3807|consen 253 SQQCQHQSPQHEAQL------RR------------------------DTNVLVYIKRRLAMCARKLGRLREAVKIMRDLM 302 (556)
T ss_pred HHHHhhhccchhhhh------hc------------------------ccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 233333333322221 10 011124455678999999999999999999988
Q ss_pred hcCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHH-------------HHHhCCCC-hHHHH
Q 005603 573 SIEFYS--PGSWHTTGMLFEAQSQYKEALVSFSISLAI-EPDYIPSIISTAEI-------------LMKLGRQS-MPIAR 635 (688)
Q Consensus 573 ~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~-------------~~~~g~~~-~~~A~ 635 (688)
+-.|-. ..++-++-..+....-|.+....+-+--++ .|..+..-+.-+.+ -.+.|--. -..|+
T Consensus 303 ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~Av 382 (556)
T KOG3807|consen 303 KEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAV 382 (556)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHH
Confidence 877732 123334444444443333332222222122 13332222211111 11111110 11577
Q ss_pred HHHHHHHHhCCCCHHHHHH
Q 005603 636 SFLMNALRLEPTNHDAWMN 654 (688)
Q Consensus 636 ~~~~~al~~~p~~~~~~~~ 654 (688)
+.+.++++.+|.-|..+..
T Consensus 383 EAihRAvEFNPHVPkYLLE 401 (556)
T KOG3807|consen 383 EAIHRAVEFNPHVPKYLLE 401 (556)
T ss_pred HHHHHHhhcCCCCcHHHHH
Confidence 8888889988887655443
No 386
>PF12854 PPR_1: PPR repeat
Probab=83.33 E-value=3.1 Score=25.52 Aligned_cols=30 Identities=20% Similarity=0.245 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHHh
Q 005603 322 YNRAERWYILALCYSAAGQNEAALNLLKKD 351 (688)
Q Consensus 322 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 351 (688)
+.+...|..+...+.+.|+.++|.++|+++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 347788999999999999999999999875
No 387
>PRK12798 chemotaxis protein; Reviewed
Probab=83.12 E-value=59 Score=33.39 Aligned_cols=230 Identities=10% Similarity=-0.077 Sum_probs=143.1
Q ss_pred HHHHHHhcC-CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHH
Q 005603 297 LTYALSVTG-QFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKF 375 (688)
Q Consensus 297 l~~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 375 (688)
-+.+|..+| ++.-....+..- ...+.+.-..-|..-+-.|+-.+|.+.+..+- -...+..+.+.....
T Consensus 86 Aa~iy~lSGGnP~vlr~L~~~d---~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~--------~~~l~~~lg~~laLv 154 (421)
T PRK12798 86 AALIYLLSGGNPATLRKLLARD---KLGNFDQRLADGALAYLSGRGREARKLLAGVA--------PEYLPAELGAYLALV 154 (421)
T ss_pred HHHhhHhcCCCHHHHHHHHHcC---CCChhhHHHHHHHHHHHcCCHHHHHHHhhcCC--------hhhcCchhhhHHHHH
Confidence 344454444 444333333332 22355666677788888999999999998874 122233322333333
Q ss_pred HHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCc--H
Q 005603 376 LGICYGNVARKSISDTERVFFQKEALESLNCAFLNERED---PEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNS--G 450 (688)
Q Consensus 376 lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~--~ 450 (688)
.|..+. ..+. .+|+..|..+--..|.. ..++..-..+..+.|+.++...+..+.+.....++ .
T Consensus 155 ~a~l~~-~~dP-----------~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~ 222 (421)
T PRK12798 155 QGNLMV-ATDP-----------ATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYAS 222 (421)
T ss_pred HHHHhc-ccCH-----------HHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHH
Confidence 344433 3444 89999999998888875 23444455566889999999999999988877665 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccc
Q 005603 451 RGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKT 530 (688)
Q Consensus 451 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 530 (688)
..+..++..+....+-.. ...+...+..-+......+|..+++.-...|+.+-|.-.-.+++.+...
T Consensus 223 ~F~~~F~~~~~~~~d~~~-~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~------------ 289 (421)
T PRK12798 223 QFAQRFVDLVVRLDDEIR-DARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADP------------ 289 (421)
T ss_pred HHHHHHHHHHHhcccccc-HHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccC------------
Confidence 333444444444442222 2335555554332366788999999999999999999999999988532
Q ss_pred cccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 005603 531 KYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKA 571 (688)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 571 (688)
.......+...-+-.-.-..++++|...+...
T Consensus 290 ---------~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 290 ---------DSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred ---------CCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 12223444444444444556677776666543
No 388
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=81.71 E-value=56 Score=32.12 Aligned_cols=106 Identities=13% Similarity=-0.007 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005603 398 KEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSL 477 (688)
Q Consensus 398 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 477 (688)
.+-++.-..+++++|.-..++..++..-. --..+|.+.++++++.. +..+.........|...+|. .
T Consensus 201 ~~RI~~A~~ALeIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~-----e~~yr~sqq~qh~~~~~da~------~ 267 (556)
T KOG3807|consen 201 PARIKAAYQALEINNECATAYVLLAEEEA--TTIVDAERLFKQALKAG-----ETIYRQSQQCQHQSPQHEAQ------L 267 (556)
T ss_pred HHHHHHHHHHHhcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHH-----HHHHhhHHHHhhhccchhhh------h
Confidence 55666677788889988888877765433 34667888888887654 22233333333333332222 1
Q ss_pred hhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 005603 478 DEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQ 517 (688)
Q Consensus 478 ~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 517 (688)
..+.. -...+-..++.+..++|+..+|++.++.+.+..|
T Consensus 268 rRDtn-vl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 268 RRDTN-VLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred hcccc-hhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 11110 2233445677888888888888888887766544
No 389
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=80.47 E-value=99 Score=34.19 Aligned_cols=303 Identities=16% Similarity=0.147 Sum_probs=150.3
Q ss_pred hcCCHHHHHHHHHHhcCCC------CCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHH
Q 005603 303 VTGQFELLAEYVEQALPGI------YNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFL 376 (688)
Q Consensus 303 ~~g~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 376 (688)
..|+..+|.+.+.--++.. ....-+++.+|.++...|+- ..+.+...+ . ....+. ..-=..|
T Consensus 369 H~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~--~~~yL~~~L------k--~~~~e~--v~hG~cL 436 (929)
T KOG2062|consen 369 HRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRG--ITDYLLQQL------K--TAENEV--VRHGACL 436 (929)
T ss_pred eccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCcc--HHHHHHHHH------H--hccchh--hhhhhhh
Confidence 4566777777777666552 12235677777777766655 667777665 2 112222 1212234
Q ss_pred HHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHH
Q 005603 377 GICYGNVARKSISDTERVFFQKEALESLNCAFLNERED--PEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWK 454 (688)
Q Consensus 377 g~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 454 (688)
|..+..+|... .+-.+.++..+..+..- ..+-+.+|.+.....+.+.-.+++.-+-+..-+.. .--.
T Consensus 437 GlGLa~mGSa~----------~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQHeki-~RGl 505 (929)
T KOG2062|consen 437 GLGLAGMGSAN----------EEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQHEKI-IRGL 505 (929)
T ss_pred hccchhccccc----------HHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhhHHHH-HHHH
Confidence 55455555430 22223333333333221 22345556555555554332223333333222221 2223
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccc
Q 005603 455 LLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYIT 534 (688)
Q Consensus 455 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 534 (688)
..|..+..-|+-++|..+.++++......-...-.+.++..|.-.|+-..-...+.-++. +++
T Consensus 506 ~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs-D~n---------------- 568 (929)
T KOG2062|consen 506 AVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS-DVN---------------- 568 (929)
T ss_pred HHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhccccc-ccc----------------
Confidence 456677778888888888888774332112333456777778777775443333333222 111
Q ss_pred cccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChh----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005603 535 SEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPG----SWHTTGMLFEAQSQYKEALVSFSISLAIEP 610 (688)
Q Consensus 535 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 610 (688)
++..-..-+|.-+.-..+++.......-..+. .|+. +-..+|.++...|. .+|+..++-... +|
T Consensus 569 --------DDVrRaAVialGFVl~~dp~~~~s~V~lLses--~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~-D~ 636 (929)
T KOG2062|consen 569 --------DDVRRAAVIALGFVLFRDPEQLPSTVSLLSES--YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS-DP 636 (929)
T ss_pred --------hHHHHHHHHHheeeEecChhhchHHHHHHhhh--cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc-Ch
Confidence 12222222222233334555555544433332 2333 33456666666664 678888877665 55
Q ss_pred CCH---HHHHHHHHHHHHhCCCChH---HHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005603 611 DYI---PSIISTAEILMKLGRQSMP---IARSFLMNALRLEPTNHDAWMNLGLIS 659 (688)
Q Consensus 611 ~~~---~~~~~la~~~~~~g~~~~~---~A~~~~~~al~~~p~~~~~~~~lg~~~ 659 (688)
.+. .++..+|.+..++.+...+ .-++.|.+.+.- .+.+....+|-++
T Consensus 637 ~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~d--KhEd~~aK~GAil 689 (929)
T KOG2062|consen 637 VDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVIND--KHEDGMAKFGAIL 689 (929)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhh--hhhHHHHHHHHHH
Confidence 442 4677777777776654311 333444444432 3344444555444
No 390
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=80.21 E-value=4.7 Score=40.63 Aligned_cols=60 Identities=12% Similarity=-0.060 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005603 371 EAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMY 441 (688)
Q Consensus 371 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 441 (688)
.+--.+..||...++. +-|+..-.+.+.++|..+.-+...|.++....+|.+|...+--+
T Consensus 229 fIetklv~CYL~~rkp-----------dlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 229 FIETKLVTCYLRMRKP-----------DLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred HHHHHHHHhhhhcCCC-----------chHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888888888 88888888888888888888888888888888888887655443
No 391
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=80.07 E-value=20 Score=26.99 Aligned_cols=64 Identities=11% Similarity=0.027 Sum_probs=46.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 005603 453 WKLLALILSADQRLKDAQSIVDFSLDEAGSM-DQLELLRLKAVLQIAQEQPKQAIGTYRILLAMI 516 (688)
Q Consensus 453 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 516 (688)
....|.-++...+.++|+..++++++..++. +...++-.+..+|...|++.+.+.+..+=+.+.
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A 73 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIA 73 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556678889999999999999887632 234445566677888999999888776666553
No 392
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=79.61 E-value=85 Score=32.95 Aligned_cols=108 Identities=14% Similarity=-0.032 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHH----HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--cCCC----cHHHHHHHHHHHHHcCC
Q 005603 396 FQKEALESLNCAF----LNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDT--VAGN----SGRGWKLLALILSADQR 465 (688)
Q Consensus 396 ~~~~A~~~~~~al----~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~----~~~~~~~la~~~~~~~~ 465 (688)
.++.|...|.++- .............+.++...+.+.+|...+-+.... ..+. .+-.+-..|.++
T Consensus 277 ~le~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~----- 351 (414)
T PF12739_consen 277 YLENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCY----- 351 (414)
T ss_pred HHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhh-----
Confidence 3466777777632 111233455666777778888887777766665544 1111 112333344444
Q ss_pred HHHHHHHHHHHHhh-cC-CC-----CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 005603 466 LKDAQSIVDFSLDE-AG-SM-----DQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQ 517 (688)
Q Consensus 466 ~~~A~~~~~~al~~-~p-~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 517 (688)
..+.. .| .. ...--+..-|.-|...|+...|..+|.+++....
T Consensus 352 ---------~~~~~~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 352 ---------ASLRSNRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred ---------cccccCCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 10111 11 00 1122234456788899999999999999998754
No 393
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=79.59 E-value=86 Score=32.94 Aligned_cols=92 Identities=14% Similarity=0.033 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC--C---CHHHHHHHHHHH--HHhCCCChHHHHHHHHHHHHhCCCCHH
Q 005603 580 GSWHTTGMLFEAQSQYKEALVSFSISLAI--EP--D---YIPSIISTAEIL--MKLGRQSMPIARSFLMNALRLEPTNHD 650 (688)
Q Consensus 580 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p--~---~~~~~~~la~~~--~~~g~~~~~~A~~~~~~al~~~p~~~~ 650 (688)
.+....+.++...|.+.+|...+-+.... .. . .+-.+...|.++ ....... .-..-++| ..
T Consensus 301 R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~--~~~~r~RK--------~a 370 (414)
T PF12739_consen 301 RCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPS--PGLTRFRK--------YA 370 (414)
T ss_pred HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCC--ccchhhHH--------HH
Confidence 44556667777888887777766665544 21 1 223333444444 2221110 00000111 12
Q ss_pred HHHH-HHHHHHHcCCHHHHHHHHHHHHcccCC
Q 005603 651 AWMN-LGLISKMEGSLQQAADYFQAAYELKLS 681 (688)
Q Consensus 651 ~~~~-lg~~~~~~g~~~~A~~~~~~al~l~p~ 681 (688)
.|.. -|.-|...|+...|..+|.+|+.....
T Consensus 371 f~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 371 FHMVLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 2333 467889999999999999999987653
No 394
>PF13041 PPR_2: PPR repeat family
Probab=79.33 E-value=6.6 Score=26.52 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=32.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHH
Q 005603 290 DAEIMDHLTYALSVTGQFELLAEYVEQALPG-IYNRAERWYILALC 334 (688)
Q Consensus 290 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~la~~ 334 (688)
|...|..+-..+.+.|++++|.++|++..+. -+.+...+..+-..
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~ 47 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILING 47 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 5567888889999999999999999988753 23355555544433
No 395
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.93 E-value=28 Score=33.59 Aligned_cols=61 Identities=11% Similarity=0.084 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005603 545 IATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSIS 605 (688)
Q Consensus 545 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 605 (688)
...+...+..|...|.+.+|+.+.++++..+|-+...+..+-.++...|+--.+++.|++.
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3444556677777888888888888888888887777887778888888877777776654
No 396
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.89 E-value=8.2 Score=37.04 Aligned_cols=60 Identities=12% Similarity=0.041 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhH
Q 005603 293 IMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQ 352 (688)
Q Consensus 293 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 352 (688)
.+...+..|..+|.+.+|+.+.++++..+|-+...+..+-.++...|+--.|.+.|.+.-
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 455677889999999999999999999999999999999999999999999999888774
No 397
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.40 E-value=1.3e+02 Score=34.50 Aligned_cols=166 Identities=15% Similarity=0.062 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhc----CCCcHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhhcCCC------C
Q 005603 417 MMYYLGLEHAVQRNVEAAFDYAIMYSDTV----AGNSGRGWKLLALILSADQRL--KDAQSIVDFSLDEAGSM------D 484 (688)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~~la~~~~~~~~~--~~A~~~~~~al~~~p~~------~ 484 (688)
-+..|+..|...|+.++|++.+.+..... +... ..+-.....+...+.- +-..++-+-.++.+|.. .
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~-~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQL-DGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTS 584 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchh-hhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeec
Confidence 35678899999999999999999988733 2222 3333434444444433 44444444444444311 0
Q ss_pred -cH----HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHH--
Q 005603 485 -QL----ELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMK-- 557 (688)
Q Consensus 485 -~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-- 557 (688)
+. ..-.....-+.....++-++.+++.++..+... ....+..++..|..
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~------------------------~~~lht~ll~ly~e~v 640 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLT------------------------STLLHTVLLKLYLEKV 640 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhcccc------------------------chHHHHHHHHHHHHHH
Confidence 00 000111223456677778888888888775542 22333333333332
Q ss_pred ------cCChhHHHHH--HHHHHh-------cCC-------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005603 558 ------LGSLPDAEIC--TEKAKS-------IEF-------YSPGSWHTTGMLFEAQSQYKEALVSFSISLA 607 (688)
Q Consensus 558 ------~g~~~~A~~~--~~~al~-------~~p-------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 607 (688)
.++-+++.+. .++... .+| .....|...+.++.++|+.++|+..|-..+.
T Consensus 641 ~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 641 LEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhccCchhccccchhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 1122233333 222211 112 1134577788888899999999999877664
No 398
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=77.71 E-value=78 Score=31.40 Aligned_cols=187 Identities=12% Similarity=0.039 Sum_probs=97.2
Q ss_pred CCCchHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHH
Q 005603 264 PKDNVEEAILLLLILMEKVASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEA 343 (688)
Q Consensus 264 ~~~~~eea~~~l~~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 343 (688)
..+--+|+|.+ ...+....|..|+++..++..+++......=...=-..+.+.-.|...|.. +-.++
T Consensus 208 ra~Lc~EairL-----gRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r--------~lI~e 274 (415)
T COG4941 208 RADLCDEAIRL-----GRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDR--------ALIDE 274 (415)
T ss_pred cchHHHHHHHH-----HHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhH--------HHHHH
Confidence 34455788776 355677889999998888877665433222111111122222334444432 33466
Q ss_pred HHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005603 344 ALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGL 423 (688)
Q Consensus 344 A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 423 (688)
+..++.+++ ....+.. ....-.++.++........ -++..-..+|.-.....| +|.+-.+.+.
T Consensus 275 g~all~rA~--------~~~~pGP--YqlqAAIaa~HA~a~~aed------tDW~~I~aLYdaL~~~ap-SPvV~LNRAV 337 (415)
T COG4941 275 GLALLDRAL--------ASRRPGP--YQLQAAIAALHARARRAED------TDWPAIDALYDALEQAAP-SPVVTLNRAV 337 (415)
T ss_pred HHHHHHHHH--------HcCCCCh--HHHHHHHHHHHHhhcccCC------CChHHHHHHHHHHHHhCC-CCeEeehHHH
Confidence 777777775 2222333 1222222222222211100 011333334444444444 4445555666
Q ss_pred HHHHcCCHHHHHHHHHHHHhh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 005603 424 EHAVQRNVEAAFDYAIMYSDT--VAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAG 481 (688)
Q Consensus 424 ~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 481 (688)
...+..-...++...+..... -.+.. ..+-..|.++.+.|+.++|...|++++.+.+
T Consensus 338 Ala~~~Gp~agLa~ve~L~~~~~L~gy~-~~h~~RadlL~rLgr~~eAr~aydrAi~La~ 396 (415)
T COG4941 338 ALAMREGPAAGLAMVEALLARPRLDGYH-LYHAARADLLARLGRVEEARAAYDRAIALAR 396 (415)
T ss_pred HHHHhhhHHhHHHHHHHhhccccccccc-ccHHHHHHHHHHhCChHHHHHHHHHHHHhcC
Confidence 666666666666666655443 12222 4555677777788888888888888887776
No 399
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=76.74 E-value=20 Score=36.99 Aligned_cols=61 Identities=18% Similarity=0.208 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcC---------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005603 546 ATWQDLATIYMKLGSLPDAEICTEKAKSIE---------FYSPGSWHTTGMLFEAQSQYKEALVSFSISLA 607 (688)
Q Consensus 546 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 607 (688)
-+...+.+++.-+|+|..|++.++.. .++ +-...+++..|.+|..+++|.+|++.|...+-
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778899999999999988653 222 23355689999999999999999999998764
No 400
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=75.97 E-value=1.2e+02 Score=33.59 Aligned_cols=286 Identities=13% Similarity=0.036 Sum_probs=142.1
Q ss_pred HHcCCcHHHHHHHHHhHHHHHhHhhhcc----cchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcC
Q 005603 336 SAAGQNEAALNLLKKDQVSRGVIQSTTS----QKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNE 411 (688)
Q Consensus 336 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 411 (688)
...|+..+|.++++--+ +. .......-+++.+|.++...|+- ..+++...++..
T Consensus 368 IH~G~~~~~~~ll~pYL---------P~~~~~~s~y~EGGalyAlGLIhA~hG~~-------------~~~yL~~~Lk~~ 425 (929)
T KOG2062|consen 368 IHRGHENQAMKLLAPYL---------PKEAGEGSGYKEGGALYALGLIHANHGRG-------------ITDYLLQQLKTA 425 (929)
T ss_pred eeccccchHHHHhhhhC---------CccCCCCCCccccchhhhhhccccCcCcc-------------HHHHHHHHHHhc
Confidence 45677777777777665 32 11222356777888887777662 667777766554
Q ss_pred CCCHHHHHH--HHHHHHHcCCHH-HHHHHHHHHHhhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhcCCCCcH
Q 005603 412 REDPEMMYY--LGLEHAVQRNVE-AAFDYAIMYSDTVAGNS-GRGWKLLALILSADQRLKDAQSIVDF-SLDEAGSMDQL 486 (688)
Q Consensus 412 p~~~~~~~~--la~~~~~~g~~~-~A~~~~~~~l~~~p~~~-~~~~~~la~~~~~~~~~~~A~~~~~~-al~~~p~~~~~ 486 (688)
.+ ..+.+. ||.-+...|.-+ +-.+.++..+..+..-. -.+-+.+|.+.....+. +|++-+.. +.+..- +..
T Consensus 426 ~~-e~v~hG~cLGlGLa~mGSa~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~-eaiedm~~Ya~ETQH--eki 501 (929)
T KOG2062|consen 426 EN-EVVRHGACLGLGLAGMGSANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQ-EAIEDMLTYAQETQH--EKI 501 (929)
T ss_pred cc-hhhhhhhhhhccchhcccccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcH-HHHHHHHHHhhhhhH--HHH
Confidence 32 222222 222223333221 11222223332222111 02334444444443333 33332222 222111 222
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHH
Q 005603 487 ELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEI 566 (688)
Q Consensus 487 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 566 (688)
.--...|..+..-|+-++|-.+.++++.-. +......-.+.++..|...|+..--..
T Consensus 502 ~RGl~vGiaL~~ygrqe~Ad~lI~el~~dk-----------------------dpilR~~Gm~t~alAy~GTgnnkair~ 558 (929)
T KOG2062|consen 502 IRGLAVGIALVVYGRQEDADPLIKELLRDK-----------------------DPILRYGGMYTLALAYVGTGNNKAIRR 558 (929)
T ss_pred HHHHHHhHHHHHhhhhhhhHHHHHHHhcCC-----------------------chhhhhhhHHHHHHHHhccCchhhHHH
Confidence 222344566677777778887777776531 011123334667777887777544444
Q ss_pred HHHHHHhcCCC-Chh--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 005603 567 CTEKAKSIEFY-SPG--SWHTTGMLFEAQSQYKEALVSFSISLAIEPDYI--PSIISTAEILMKLGRQSMPIARSFLMNA 641 (688)
Q Consensus 567 ~~~~al~~~p~-~~~--~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~~~A~~~~~~a 641 (688)
.+.-++. +++ +.. +-..+|.+++ .+++.-.....-..+..-.++ .+-..+|.++.-.|.. +|+..++..
T Consensus 559 lLh~aVs-D~nDDVrRaAVialGFVl~--~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~---eAi~lLepl 632 (929)
T KOG2062|consen 559 LLHVAVS-DVNDDVRRAAVIALGFVLF--RDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK---EAINLLEPL 632 (929)
T ss_pred hhccccc-ccchHHHHHHHHHheeeEe--cChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH---HHHHHHhhh
Confidence 4333333 332 222 2334444433 455555444443333222222 2445677777777775 699988887
Q ss_pred HHhCCCCH---HHHHHHHHHHHHcCC-----HHHHHHHHHHHHc
Q 005603 642 LRLEPTNH---DAWMNLGLISKMEGS-----LQQAADYFQAAYE 677 (688)
Q Consensus 642 l~~~p~~~---~~~~~lg~~~~~~g~-----~~~A~~~~~~al~ 677 (688)
.. +|.+. .+...+|.+..+..+ +..=.+.|.+.+.
T Consensus 633 ~~-D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~ 675 (929)
T KOG2062|consen 633 TS-DPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVIN 675 (929)
T ss_pred hc-ChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhh
Confidence 76 66542 466677777766543 4445555665554
No 401
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=75.90 E-value=6.1 Score=38.81 Aligned_cols=62 Identities=15% Similarity=0.042 Sum_probs=52.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005603 598 ALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKM 661 (688)
Q Consensus 598 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 661 (688)
|..+|.+|+.+.|+....++.+|.+....|+.- .|+-+|-+++-.....+.+..+|..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l--~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDL--DAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HH--HHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchH--HHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 678999999999999999999999999999887 99999999997765568888999888877
No 402
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=75.01 E-value=6.4 Score=23.25 Aligned_cols=27 Identities=19% Similarity=0.047 Sum_probs=14.4
Q ss_pred ChhHHHHHHHHHHhcCCCChhHHHHHH
Q 005603 560 SLPDAEICTEKAKSIEFYSPGSWHTTG 586 (688)
Q Consensus 560 ~~~~A~~~~~~al~~~p~~~~~~~~lg 586 (688)
+++.|...|++++...|.++..|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 345555555555555555555555443
No 403
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=74.20 E-value=1 Score=48.74 Aligned_cols=55 Identities=27% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH--hhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHH
Q 005603 455 LLALILSADQRLKDAQSIVDFSL--DEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYR 510 (688)
Q Consensus 455 ~la~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 510 (688)
.-+..+...|++..|..++.+.- .+.+. .........+.+....|+++.|+..+.
T Consensus 29 ~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~-q~~~~~Ll~A~lal~~~~~~~Al~~L~ 85 (536)
T PF04348_consen 29 LAARALLQEGDWAQAQALLNQLDPQQLSPS-QQARYQLLRARLALAQGDPEQALSLLN 85 (536)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHhCCCHHHHHHHHHhcccccCChH-HHHHHHHHHHHHHHhcCCHHHHHHHhc
Confidence 33444555555555555554433 11221 233333444444455555555554443
No 404
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=73.76 E-value=52 Score=34.03 Aligned_cols=125 Identities=15% Similarity=-0.032 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChh--HHHHH--HHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHH
Q 005603 547 TWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPG--SWHTT--GMLFEAQSQYKEALVSFSISLAIEPD---YIPSIIST 619 (688)
Q Consensus 547 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l--g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l 619 (688)
.....+.-.+..++|..|...+......-|.... .+..+ |..++..-++.+|.+.++..+...-. ....+..+
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~ 212 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKEL 212 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Confidence 3455667778999999999999999885333333 34444 44566788999999999998765211 12233333
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH------HHcCCHHHHHHHHHHHHcc
Q 005603 620 AEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLIS------KMEGSLQQAADYFQAAYEL 678 (688)
Q Consensus 620 a~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~------~~~g~~~~A~~~~~~al~l 678 (688)
..+........ ........ .+..+ ....++.++ ...|+|+.|+..+-+++++
T Consensus 213 ~~~~~~~~~~~--~~~~~~~~----~~~~~-~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 213 VEVLKALESIL--SALEDKKQ----RQKKL-YYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred HHHHHHHHhhc--cchhhhhc----ccccc-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 33322222221 11111000 01111 223333333 4578999999888888764
No 405
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=73.49 E-value=54 Score=27.59 Aligned_cols=108 Identities=8% Similarity=-0.044 Sum_probs=65.4
Q ss_pred HHHHHHHHHHcCC---CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcCCCc--------HHHHHHHHHHHHHcC
Q 005603 400 ALESLNCAFLNER---EDPEMMYYLGLEHAV----QRNVEAAFDYAIMYSDTVAGNS--------GRGWKLLALILSADQ 464 (688)
Q Consensus 400 A~~~~~~al~~~p---~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~--------~~~~~~la~~~~~~~ 464 (688)
-...|+..+.... +..+.|.....-... .+.-..-...+++++....++. +..|...+.
T Consensus 4 ~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~------ 77 (126)
T PF08311_consen 4 QRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYAD------ 77 (126)
T ss_dssp HHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHH------
Confidence 3444555554332 334455443332221 2444555667777776644332 133333333
Q ss_pred CHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005603 465 RLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILL 513 (688)
Q Consensus 465 ~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 513 (688)
...++.++|..+....-....+..+...|..+...|++++|.++|+.++
T Consensus 78 ~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 78 LSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp TBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 2228889998888655444788899999999999999999999998764
No 406
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.38 E-value=60 Score=34.82 Aligned_cols=25 Identities=8% Similarity=-0.089 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHH
Q 005603 488 LLRLKAVLQIAQEQPKQAIGTYRIL 512 (688)
Q Consensus 488 ~~~~la~~~~~~g~~~~A~~~~~~a 512 (688)
-|..+|.+....|++..|.++|.++
T Consensus 668 Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 668 KWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred HHHHHHHHHhhcccchhHHHHHHhh
Confidence 3444555555555555555544444
No 407
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.17 E-value=7.3 Score=25.65 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=18.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHh
Q 005603 549 QDLATIYMKLGSLPDAEICTEKAKS 573 (688)
Q Consensus 549 ~~la~~~~~~g~~~~A~~~~~~al~ 573 (688)
+.+|..|...|+.+.|...+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4567777777777777777777764
No 408
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=73.07 E-value=4.9 Score=23.77 Aligned_cols=30 Identities=27% Similarity=0.316 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 005603 305 GQFELLAEYVEQALPGIYNRAERWYILALC 334 (688)
Q Consensus 305 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 334 (688)
|+++.+...|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567888999999999889888888877654
No 409
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=72.08 E-value=99 Score=29.96 Aligned_cols=98 Identities=10% Similarity=0.007 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---H
Q 005603 544 EIATWQDLATIYMKLGSLPDAEICTEKAKSIEF------YSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYI---P 614 (688)
Q Consensus 544 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~ 614 (688)
..++|.++|..|.+.++.+.+.+++.+.+...- +-.-.-..+|.+|..+.-.++.++.....++...+.. .
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 355666666666666666666666555544221 1111223445555444444555555544444433211 1
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 005603 615 SIISTAEILMKLGRQSMPIARSFLMNALR 643 (688)
Q Consensus 615 ~~~~la~~~~~~g~~~~~~A~~~~~~al~ 643 (688)
.....|...+...++. +|-..+...+.
T Consensus 194 yK~Y~Gi~~m~~RnFk--eAa~Ll~d~l~ 220 (412)
T COG5187 194 YKVYKGIFKMMRRNFK--EAAILLSDILP 220 (412)
T ss_pred HHHHHHHHHHHHHhhH--HHHHHHHHHhc
Confidence 1222333334444444 55555544443
No 410
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.52 E-value=1.7e+02 Score=32.96 Aligned_cols=54 Identities=9% Similarity=-0.066 Sum_probs=37.0
Q ss_pred HHHHHhcCCHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHhH
Q 005603 298 TYALSVTGQFELLAEYVEQALPGIYN-RAERWYILALCYSAAGQNEAALNLLKKDQ 352 (688)
Q Consensus 298 ~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l 352 (688)
-..+.+...|+.|+..-+.- ..+++ -..+....|.-++..|++++|...|-+.+
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI 395 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETI 395 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc
Confidence 34455666677777766553 22222 23567778888888999999988888887
No 411
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=70.65 E-value=67 Score=27.43 Aligned_cols=35 Identities=11% Similarity=-0.036 Sum_probs=17.0
Q ss_pred HHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Q 005603 426 AVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILS 461 (688)
Q Consensus 426 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~ 461 (688)
...+.....+.+++.++..++.++ .....+..++.
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~-~~~~~li~ly~ 52 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENP-ALQTKLIELYA 52 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccch-hHHHHHHHHHH
Confidence 334455555555555555544443 44444444443
No 412
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=69.06 E-value=12 Score=37.01 Aligned_cols=79 Identities=16% Similarity=0.128 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005603 546 ATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILM 624 (688)
Q Consensus 546 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 624 (688)
....+++.+-+..+.+..|+..-..++..++....+++..+..+....++++|++.+..+....|++......+..+-.
T Consensus 276 ~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~ 354 (372)
T KOG0546|consen 276 SIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ 354 (372)
T ss_pred ccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence 3444566666777777777776666666666777777777777777777777777777777777777665554444433
No 413
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=68.57 E-value=1.5e+02 Score=30.66 Aligned_cols=62 Identities=15% Similarity=-0.006 Sum_probs=43.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCc-HHHHHHH--HHHHHHcCCHHHHHHHHHHHHhhc
Q 005603 419 YYLGLEHAVQRNVEAAFDYAIMYSDTVAGNS-GRGWKLL--ALILSADQRLKDAQSIVDFSLDEA 480 (688)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~~l--a~~~~~~~~~~~A~~~~~~al~~~ 480 (688)
...+..++..++|..|...+..+...-|... ...+..+ |.-+...-++.+|.+.++..+...
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~ 199 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRD 199 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 4566677889999999999999887644443 1233333 344566778889999988877653
No 414
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=68.50 E-value=71 Score=26.89 Aligned_cols=85 Identities=9% Similarity=0.079 Sum_probs=53.5
Q ss_pred CChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHh--cCCC
Q 005603 500 EQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKS--IEFY 577 (688)
Q Consensus 500 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~ 577 (688)
+....-...+++++....+.. ....++....+|...+.. .+++...|+.+.. +.-.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~----------------~Y~nD~RylkiWi~ya~~------~~~~~~if~~l~~~~IG~~ 97 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDE----------------RYKNDERYLKIWIKYADL------SSDPREIFKFLYSKGIGTK 97 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSG----------------GGTT-HHHHHHHHHHHTT------BSHHHHHHHHHHHHTTSTT
T ss_pred CchhHHHHHHHHHHHHHhhhH----------------hhcCCHHHHHHHHHHHHH------ccCHHHHHHHHHHcCccHH
Confidence 344455567777777654421 112233345555555542 2277777777665 4456
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005603 578 SPGSWHTTGMLFEAQSQYKEALVSFSISL 606 (688)
Q Consensus 578 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al 606 (688)
.+..|...|..+...|++++|.+.|+.++
T Consensus 98 ~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 98 LALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp BHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 67788889999999999999999998764
No 415
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=67.56 E-value=8.3 Score=22.44 Aligned_cols=26 Identities=19% Similarity=0.388 Sum_probs=16.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHh
Q 005603 548 WQDLATIYMKLGSLPDAEICTEKAKS 573 (688)
Q Consensus 548 ~~~la~~~~~~g~~~~A~~~~~~al~ 573 (688)
|..+-..|.+.|++++|...+++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 45556666666666666666666543
No 416
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=67.44 E-value=1.1e+02 Score=28.53 Aligned_cols=61 Identities=16% Similarity=0.174 Sum_probs=55.5
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 005603 553 TIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYI 613 (688)
Q Consensus 553 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 613 (688)
.-+.+.+...+|+...+.-++..|.+......+-.++.-.|+|++|...++-+-++.|++.
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 4456778899999999999999999999999999999999999999999999999998864
No 417
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=66.17 E-value=1e+02 Score=27.74 Aligned_cols=193 Identities=12% Similarity=0.036 Sum_probs=115.9
Q ss_pred CcHHHHHHHHHHHH-hcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH-----cCCcHHHHHHHHHhHHHHHhHhhhc
Q 005603 289 WDAEIMDHLTYALS-VTGQFELLAEYVEQALPGIYNRAERWYILALCYSA-----AGQNEAALNLLKKDQVSRGVIQSTT 362 (688)
Q Consensus 289 ~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-----~g~~~~A~~~~~~~l~~~~~~~~~~ 362 (688)
.+|+...+|+..+. ...+|++|..+|..--..+ ..+..-+.+|.-++. .++...|++.+..+. .
T Consensus 32 K~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC---------~ 101 (248)
T KOG4014|consen 32 KRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIAC---------D 101 (248)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHh---------c
Confidence 57888888887654 4567888888888754433 356677777765542 236677777777775 2
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005603 363 SQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYS 442 (688)
Q Consensus 363 ~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 442 (688)
.+. +.+...+|.++......... .-+..+|..++.++-.+ .+..+-+.|...|....+ + +.
T Consensus 102 ~n~----~~aC~~~gLl~~~g~~~r~~----dpd~~Ka~~y~traCdl--~~~~aCf~LS~m~~~g~~--k-------~~ 162 (248)
T KOG4014|consen 102 ANI----PQACRYLGLLHWNGEKDRKA----DPDSEKAERYMTRACDL--EDGEACFLLSTMYMGGKE--K-------FK 162 (248)
T ss_pred cCC----HHHHhhhhhhhccCcCCccC----CCCcHHHHHHHHHhccC--CCchHHHHHHHHHhccch--h-------hc
Confidence 222 56677777776654332111 01137888888887654 456677777666654322 1 11
Q ss_pred hhcCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHH
Q 005603 443 DTVAG--NSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQ----EQPKQAIGTYRILLAMI 516 (688)
Q Consensus 443 ~~~p~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~ 516 (688)
...|. .+ ...+..+.-..+.+.|.++--++-++. .+.+.-++.+.|..- .+.++|..+-.++.++.
T Consensus 163 t~ap~~g~p----~~~~~~~~~~kDMdka~qfa~kACel~----~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~ 234 (248)
T KOG4014|consen 163 TNAPGEGKP----LDRAELGSLSKDMDKALQFAIKACELD----IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIM 234 (248)
T ss_pred ccCCCCCCC----cchhhhhhhhHhHHHHHHHHHHHHhcC----ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHH
Confidence 12331 11 123344555677888888887777664 455555666665432 34667777777777764
Q ss_pred Hh
Q 005603 517 QA 518 (688)
Q Consensus 517 ~~ 518 (688)
..
T Consensus 235 ~e 236 (248)
T KOG4014|consen 235 EE 236 (248)
T ss_pred HH
Confidence 43
No 418
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=64.77 E-value=49 Score=36.35 Aligned_cols=123 Identities=9% Similarity=-0.003 Sum_probs=76.3
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHH---HcCCHHH
Q 005603 363 SQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNERED------PEMMYYLGLEHA---VQRNVEA 433 (688)
Q Consensus 363 ~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~---~~g~~~~ 433 (688)
.+++.+.++....+-..|....+| +.-+...+..-.+ |+. ..+.+..+.++. +-|+-++
T Consensus 194 Dnp~VL~~d~V~nlmlSyRDvQdY-----------~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRak 261 (1226)
T KOG4279|consen 194 DNPDVLHPDTVSNLMLSYRDVQDY-----------DAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAK 261 (1226)
T ss_pred CCccccCHHHHHHHHhhhccccch-----------HHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHH
Confidence 345555567777777778777777 6666655544333 422 122233333332 3578889
Q ss_pred HHHHHHHHHhhcC-CCcHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCC
Q 005603 434 AFDYAIMYSDTVA-GNSGRGWKLLALILS---------ADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQ 501 (688)
Q Consensus 434 A~~~~~~~l~~~p-~~~~~~~~~la~~~~---------~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~ 501 (688)
|+...-.+++... -.+ +.+...|++|- ..+..+.|+.+|+++++..| ....-.+++.++...|+
T Consensus 262 AL~~~l~lve~eg~vap-Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP---~~~sGIN~atLL~aaG~ 335 (1226)
T KOG4279|consen 262 ALNTVLPLVEKEGPVAP-DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEP---LEYSGINLATLLRAAGE 335 (1226)
T ss_pred HHHHHHHHHHhcCCCCC-ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCc---hhhccccHHHHHHHhhh
Confidence 9888888887654 344 77777777763 33456778899999998887 33334456666666554
No 419
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=64.63 E-value=10 Score=22.03 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=17.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcC
Q 005603 294 MDHLTYALSVTGQFELLAEYVEQALP 319 (688)
Q Consensus 294 ~~~l~~~~~~~g~~~~A~~~~~~~l~ 319 (688)
|..+-.+|.+.|++++|.+.|++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 45566667777777777777766543
No 420
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.25 E-value=2.7e+02 Score=32.12 Aligned_cols=180 Identities=12% Similarity=0.023 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhh
Q 005603 371 EAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLN----EREDPEMMYYLGLEHAVQRNV--EAAFDYAIMYSDT 444 (688)
Q Consensus 371 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~--~~A~~~~~~~l~~ 444 (688)
.-+..|+..|...|.+ ++|++.+.+.... ++...+.+-.....+...+.. +-..++..-.++.
T Consensus 505 ~~y~~Li~LY~~kg~h-----------~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~ 573 (877)
T KOG2063|consen 505 KKYRELIELYATKGMH-----------EKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNK 573 (877)
T ss_pred ccHHHHHHHHHhccch-----------HHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhcc
Confidence 4467888999999999 9999999999863 333344444444455555554 6666666666766
Q ss_pred cCCCcHHHHHH------------HHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHc--------CChHH
Q 005603 445 VAGNSGRGWKL------------LALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQ--------EQPKQ 504 (688)
Q Consensus 445 ~p~~~~~~~~~------------la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~--------g~~~~ 504 (688)
+|...+.++.. ...-+......+-++.+++.++..... .....+..++..|... ++-++
T Consensus 574 ~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~-~~~~lht~ll~ly~e~v~~~~~~~~kg~e 652 (877)
T KOG2063|consen 574 NPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRL-TSTLLHTVLLKLYLEKVLEQASTDGKGEE 652 (877)
T ss_pred CchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccc-cchHHHHHHHHHHHHHHhhccCchhcccc
Confidence 66543222211 122345667778888999998876652 2444445555554432 22334
Q ss_pred HHHH--HHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 005603 505 AIGT--YRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKS 573 (688)
Q Consensus 505 A~~~--~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 573 (688)
+.+. .+++...-+.. +.+.. ...+..-+ ....|...+.++.++|+.++|+..|-..+.
T Consensus 653 ~~E~~~rekl~~~l~~s-~~Y~p---------~~~L~~~~-~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 653 APETTVREKLLDFLESS-DLYDP---------QLLLERLN-GDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred chhhhHHHHHHHHhhhh-cccCc---------chhhhhcc-chhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 4444 23333222111 00000 00111122 266788888889999999999998876654
No 421
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=64.21 E-value=1.6e+02 Score=29.27 Aligned_cols=101 Identities=11% Similarity=0.010 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcH-H
Q 005603 414 DPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAG-----NSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQL-E 487 (688)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~ 487 (688)
-.+++...+..|.+.|+-+.|.+.+.+..+..-. +.+-....+|..|....-..+-++..+..++...+|+.- .
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNR 182 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNR 182 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhh
Confidence 4678999999999999999999999888765322 112345567777777766777777777777777765322 2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005603 488 LLRLKAVLQIAQEQPKQAIGTYRILLA 514 (688)
Q Consensus 488 ~~~~la~~~~~~g~~~~A~~~~~~al~ 514 (688)
.-...|.......++.+|-..|-..+.
T Consensus 183 lKvY~Gly~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 183 LKVYQGLYCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 223344555556667777766665554
No 422
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=64.00 E-value=1.4e+02 Score=28.67 Aligned_cols=62 Identities=15% Similarity=-0.039 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005603 544 EIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYS------PGSWHTTGMLFEAQSQYKEALVSFSIS 605 (688)
Q Consensus 544 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~a 605 (688)
...+...+|..|+..|+|++|.++|+.+....... ..+...+..|+...|+.+..+...-+.
T Consensus 177 ~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 177 ASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 35566678888888888888888888875543321 234555666777777777666554443
No 423
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=63.89 E-value=11 Score=37.41 Aligned_cols=108 Identities=12% Similarity=-0.081 Sum_probs=75.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCC-----------C--------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005603 550 DLATIYMKLGSLPDAEICTEKAKSIEF-----------Y--------SPGSWHTTGMLFEAQSQYKEALVSFSISLAIEP 610 (688)
Q Consensus 550 ~la~~~~~~g~~~~A~~~~~~al~~~p-----------~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 610 (688)
..+.-.++.++++.|..-|.+++..-. + -.....+++.+-...+.+..|+.....++..++
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~ 306 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDER 306 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccCh
Confidence 345556777788887777777654211 1 112345566777777788888877777777777
Q ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005603 611 DYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLIS 659 (688)
Q Consensus 611 ~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 659 (688)
+...+++.++..+....+++ +|++.+..+....|++..+...+..+-
T Consensus 307 s~tka~~Rr~~~~~~~~~~~--~a~~~~~~a~~~~p~d~~i~~~~~~~~ 353 (372)
T KOG0546|consen 307 SKTKAHYRRGQAYKLLKNYD--EALEDLKKAKQKAPNDKAIEEELENVR 353 (372)
T ss_pred hhCcHHHHHHhHHHhhhchh--hhHHHHHHhhccCcchHHHHHHHHHhh
Confidence 78888888888888888887 888888888888888876655554443
No 424
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.80 E-value=51 Score=33.52 Aligned_cols=98 Identities=15% Similarity=0.061 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHH
Q 005603 487 ELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEI 566 (688)
Q Consensus 487 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 566 (688)
.++..+|.-|...|+.+.|++.|-++-..+.. .......|.++..+-...|+|..-..
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs----------------------~khvInm~ln~i~VSI~~~nw~hv~s 208 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTS----------------------AKHVINMCLNLILVSIYMGNWGHVLS 208 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc----------------------hHHHHHHHHHHHHHHHhhcchhhhhh
Confidence 45667788888899999999988886554333 12246778888888888899988777
Q ss_pred HHHHHHhcC-------C-CChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005603 567 CTEKAKSIE-------F-YSPGSWHTTGMLFEAQSQYKEALVSFSISL 606 (688)
Q Consensus 567 ~~~~al~~~-------p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 606 (688)
+..++...- + -.+.+...-|.+...+++|..|..+|-.+.
T Consensus 209 y~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 209 YISKAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 777776541 0 123345666777778889999999987664
No 425
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=63.80 E-value=67 Score=30.88 Aligned_cols=66 Identities=14% Similarity=-0.058 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHH
Q 005603 487 ELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEI 566 (688)
Q Consensus 487 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 566 (688)
.+...+|.-|...|++++|++.|+.+...... +.+. .....+...+..++...|+.++.+.
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~--egW~-----------------~l~~~~l~~l~~Ca~~~~~~~~~l~ 239 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRR--EGWW-----------------SLLTEVLWRLLECAKRLGDVEDYLT 239 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh--CCcH-----------------HHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 34456667777777777777777776544332 1111 1134555666677777777666665
Q ss_pred HHHHH
Q 005603 567 CTEKA 571 (688)
Q Consensus 567 ~~~~a 571 (688)
+.-+.
T Consensus 240 ~~leL 244 (247)
T PF11817_consen 240 TSLEL 244 (247)
T ss_pred HHHHH
Confidence 55443
No 426
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=63.21 E-value=1.3e+02 Score=28.01 Aligned_cols=59 Identities=12% Similarity=0.068 Sum_probs=48.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 005603 422 GLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAG 481 (688)
Q Consensus 422 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 481 (688)
...+.+.+..++|+...+.-++..|.+. .....+-.++.-.|+|++|..-++-+-...|
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda-~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p 66 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDA-GGRHFLFQLLCVAGDWEKALAQLNLAATLSP 66 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccc-cchhHHHHHHhhcchHHHHHHHHHHHhhcCc
Confidence 3456677888888888888888888887 8888888888888999998888888887777
No 427
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=63.04 E-value=16 Score=21.77 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=20.1
Q ss_pred HHHHHcCCHHHHHHHHHHhhCCC
Q 005603 202 HLWIKAGLLEEAIIAYRRALVKP 224 (688)
Q Consensus 202 ~~~~~~g~~~eA~~~y~~al~~~ 224 (688)
..|.+.|++++|+..|+++....
T Consensus 8 ~~~~~~~~~~~a~~~~~~M~~~g 30 (35)
T TIGR00756 8 DGLCKAGRVEEALELFKEMLERG 30 (35)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcC
Confidence 46789999999999999998764
No 428
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=62.97 E-value=1e+02 Score=29.74 Aligned_cols=134 Identities=11% Similarity=0.084 Sum_probs=84.2
Q ss_pred CcchHHHHHHHHHHHHHc--CChhHHHHHHHHHHhcCCCChhHHHHHHHHH------HHcCCHHHHHHHHHHHHhcCCCC
Q 005603 541 KNLEIATWQDLATIYMKL--GSLPDAEICTEKAKSIEFYSPGSWHTTGMLF------EAQSQYKEALVSFSISLAIEPDY 612 (688)
Q Consensus 541 ~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~------~~~g~~~~A~~~~~~al~~~p~~ 612 (688)
.|.+-.+|...-.++... .+|..-....++.+..++.+...|...-.+. ..-..+.+-.++-...+..++.+
T Consensus 104 ~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N 183 (328)
T COG5536 104 NPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYN 183 (328)
T ss_pred CCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCC
Confidence 344677777777776654 5677788888999999998887776544443 23334444466666777889999
Q ss_pred HHHHHHH---HHHHHHhCCCC----hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 005603 613 IPSIIST---AEILMKLGRQS----MPIARSFLMNALRLEPTNHDAWMNLGLISKM----EGSLQQAADYFQA 674 (688)
Q Consensus 613 ~~~~~~l---a~~~~~~g~~~----~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~ 674 (688)
..+|... -......|++- +++-+++.-.++-.+|++..+|..+-.+... .-.+.+-++.+.+
T Consensus 184 ~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~~~~~d~~~~~e~v~~L~k 256 (328)
T COG5536 184 NSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSSEFATDIVMIGEKVEDLGK 256 (328)
T ss_pred hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHhccchHHHHHHHHHHHHHHh
Confidence 9998877 44444456553 2234455555566789998888765443322 2234455555533
No 429
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=62.10 E-value=52 Score=24.68 Aligned_cols=22 Identities=9% Similarity=0.238 Sum_probs=11.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 005603 584 TTGMLFEAQSQYKEALVSFSIS 605 (688)
Q Consensus 584 ~lg~~~~~~g~~~~A~~~~~~a 605 (688)
..|.-+-..|++++|+.+|+++
T Consensus 11 ~~AVe~D~~gr~~eAi~~Y~~a 32 (75)
T cd02682 11 INAVKAEKEGNAEDAITNYKKA 32 (75)
T ss_pred HHHHHHHhcCCHHHHHHHHHHH
Confidence 3344445556666666666543
No 430
>PRK12798 chemotaxis protein; Reviewed
Probab=60.89 E-value=2.1e+02 Score=29.62 Aligned_cols=181 Identities=9% Similarity=-0.061 Sum_probs=109.9
Q ss_pred HHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-CCCcHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhcC
Q 005603 405 NCAFLNERE-DPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTV-AGNSGRGWKLLAL-ILSADQRLKDAQSIVDFSLDEAG 481 (688)
Q Consensus 405 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~la~-~~~~~~~~~~A~~~~~~al~~~p 481 (688)
+..+..++. +.+.-..-|..-+-.|+-.++.+.+..+-... |... ..+..|.. ......+..+|+..|+.+--..|
T Consensus 101 r~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~l-g~~laLv~a~l~~~~dP~~Al~~lD~aRLlaP 179 (421)
T PRK12798 101 RKLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAEL-GAYLALVQGNLMVATDPATALKLLDQARLLAP 179 (421)
T ss_pred HHHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchh-hhHHHHHHHHHhcccCHHHHHHHHHHHHHhCC
Confidence 333444432 44455555666677888888877776543222 2222 34444433 34556778888888888877777
Q ss_pred CCC-cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCC
Q 005603 482 SMD-QLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGS 560 (688)
Q Consensus 482 ~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 560 (688)
..- .-.++..-..+....|+.++...+-.+.+..+.. .+.-...+...+......++
T Consensus 180 GTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~----------------------S~YA~~F~~~F~~~~~~~~d 237 (421)
T PRK12798 180 GTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRH----------------------SPYASQFAQRFVDLVVRLDD 237 (421)
T ss_pred chHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhcc----------------------CchHHHHHHHHHHHHHhccc
Confidence 321 1224445555667788888888888877777554 45455566666666665553
Q ss_pred hhHHHHHHHHHHhc-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005603 561 LPDAEICTEKAKSI-EFY-SPGSWHTTGMLFEAQSQYKEALVSFSISLAIE 609 (688)
Q Consensus 561 ~~~A~~~~~~al~~-~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 609 (688)
-..- ..+...+.. +|. ....|..++..-.-.|+.+-|...-++++.+.
T Consensus 238 ~~~~-~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~ 287 (421)
T PRK12798 238 EIRD-ARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLA 287 (421)
T ss_pred cccH-HHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhc
Confidence 3322 224444443 443 34567777888888888888888888888775
No 431
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=60.37 E-value=1.6e+02 Score=28.08 Aligned_cols=62 Identities=10% Similarity=0.060 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHh
Q 005603 417 MMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILS-ADQRLKDAQSIVDFSLD 478 (688)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~ 478 (688)
-+..+|.+..+.|+|++.+.+.++++..+|.-..+-...+..+|- ..|....+...+.....
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 356788899999999999999999999877655355555655552 23445555555554443
No 432
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=60.08 E-value=2.9 Score=45.28 Aligned_cols=117 Identities=15% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005603 400 ALESLNCAFLNER-EDPEMMYYLGLEHAVQRNVEAAFDYAIMYS--DTVAGNSGRGWKLLALILSADQRLKDAQSIVDFS 476 (688)
Q Consensus 400 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l--~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 476 (688)
|..++.++-...+ ........-+..+...|++..|...+.++- .+.|..........+.+....|+++.|+..+...
T Consensus 8 A~~yL~~A~~a~~~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~ 87 (536)
T PF04348_consen 8 AEQYLQQAQQASGEQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQ 87 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccC
Confidence 4444555544443 234455666788999999999999998876 3444444366677889999999999999999742
Q ss_pred -HhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 005603 477 -LDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMI 516 (688)
Q Consensus 477 -l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 516 (688)
...-|.......+..++.++...|++-+|...+-.+-...
T Consensus 88 ~~~~l~~~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l~~lL 128 (536)
T PF04348_consen 88 DLWQLPPEQQARYHQLRAQAYEQQGDPLAAARERIALDPLL 128 (536)
T ss_dssp -----------------------------------------
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhc
Confidence 1222222445567778999999999988888765554443
No 433
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=58.31 E-value=21 Score=21.24 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=15.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHh
Q 005603 548 WQDLATIYMKLGSLPDAEICTEKAKS 573 (688)
Q Consensus 548 ~~~la~~~~~~g~~~~A~~~~~~al~ 573 (688)
|..+-..|.+.|++++|...|.+...
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555566666666666666665543
No 434
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=57.39 E-value=3.9e+02 Score=31.69 Aligned_cols=55 Identities=4% Similarity=-0.003 Sum_probs=25.6
Q ss_pred CccCCCchHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHh
Q 005603 261 PIAPKDNVEEAILLLLILMEKVASKEMEWDAEIMDHLTYALSVTG--QFELLAEYVEQA 317 (688)
Q Consensus 261 ~~~~~~~~eea~~~l~~~~~~~~l~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~ 317 (688)
.|..+..++.-+..+...+++...+..|+ .-...+-..|.+.+ ..+.|+....+.
T Consensus 762 ~~~~r~~~d~kv~~vc~~vr~~l~~~~~~--~~~~~ilTs~vk~~~~~ie~aL~kI~~l 818 (1265)
T KOG1920|consen 762 VYMSRDPYDNKVNSVCDAVRNALERRAPD--KFNLFILTSYVKSNPPEIEEALQKIKEL 818 (1265)
T ss_pred eEEeccchhhHHHHHHHHHHHHHhhcCcc--hhhHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 45545555544444444445555555554 22223333444444 445555544443
No 435
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=57.14 E-value=38 Score=31.07 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=21.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccC
Q 005603 637 FLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKL 680 (688)
Q Consensus 637 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 680 (688)
..++.++..| ++.++..++.++...|+.++|....+++..+.|
T Consensus 133 ~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 133 WAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3334444444 344455555555555555555555555555554
No 436
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=56.61 E-value=2e+02 Score=28.02 Aligned_cols=101 Identities=11% Similarity=0.113 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCc--HH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHH-H
Q 005603 415 PEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNS--GR---GWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLE-L 488 (688)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~---~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-~ 488 (688)
.+++.++|..|.+.++.+.+.+.+.+.+...-... ++ .-..+|.+|-.+.-.++.++..+..++...+|+.-. .
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 68999999999999999999999988876532211 12 334677777777777888888888888887663322 2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHH
Q 005603 489 LRLKAVLQIAQEQPKQAIGTYRILLAM 515 (688)
Q Consensus 489 ~~~la~~~~~~g~~~~A~~~~~~al~~ 515 (688)
-...|.......++.+|-..+-..+..
T Consensus 195 K~Y~Gi~~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 195 KVYKGIFKMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 234455566667777777776665543
No 437
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=56.33 E-value=84 Score=32.36 Aligned_cols=47 Identities=11% Similarity=-0.007 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005603 395 FFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMY 441 (688)
Q Consensus 395 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 441 (688)
...-+|+.+++.++..+|.+......+..+|...|-.+.|...|...
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 34478999999999999999999999999999999999999999754
No 438
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.10 E-value=65 Score=34.58 Aligned_cols=99 Identities=16% Similarity=0.152 Sum_probs=66.3
Q ss_pred HHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHH
Q 005603 426 AVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQA 505 (688)
Q Consensus 426 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A 505 (688)
...|+++.|...+ |.-+-+.....+..+..+|-.++|++ ..++ +. .+-.+..+.|+++.|
T Consensus 597 vmrrd~~~a~~vL-------p~I~k~~rt~va~Fle~~g~~e~AL~-------~s~D---~d---~rFelal~lgrl~iA 656 (794)
T KOG0276|consen 597 VLRRDLEVADGVL-------PTIPKEIRTKVAHFLESQGMKEQALE-------LSTD---PD---QRFELALKLGRLDIA 656 (794)
T ss_pred hhhcccccccccc-------ccCchhhhhhHHhHhhhccchHhhhh-------cCCC---hh---hhhhhhhhcCcHHHH
Confidence 3456666665432 22221556677777878877776654 3442 11 223455778888888
Q ss_pred HHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 005603 506 IGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSI 574 (688)
Q Consensus 506 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 574 (688)
.++..++- +..-|..||.+....+++..|.+|+.++...
T Consensus 657 ~~la~e~~------------------------------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 657 FDLAVEAN------------------------------SEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred HHHHHhhc------------------------------chHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 77655442 3667999999999999999999999998654
No 439
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=51.81 E-value=2.3e+02 Score=27.51 Aligned_cols=125 Identities=13% Similarity=0.058 Sum_probs=87.8
Q ss_pred hhHHHHHHHHHHhcCCCChhHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH---HHhCCCC-hHHH
Q 005603 561 LPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQ--SQYKEALVSFSISLAIEPDYIPSIISTAEIL---MKLGRQS-MPIA 634 (688)
Q Consensus 561 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~---~~~g~~~-~~~A 634 (688)
++.-..++..+++-+|.+...|+..-.++..- .++..-+...++.++.++.+..+|...-.++ ...+++. +..-
T Consensus 90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e 169 (328)
T COG5536 90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHE 169 (328)
T ss_pred hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHH
Confidence 45667788899999999999999888877665 5688888888999999999888776655444 2233443 1133
Q ss_pred HHHHHHHHHhCCCCHHHHHHH---HHHHHHcCC------HHHHHHHHHHHHcccCCCCCC
Q 005603 635 RSFLMNALRLEPTNHDAWMNL---GLISKMEGS------LQQAADYFQAAYELKLSAPVQ 685 (688)
Q Consensus 635 ~~~~~~al~~~p~~~~~~~~l---g~~~~~~g~------~~~A~~~~~~al~l~p~~~~~ 685 (688)
.++-..++..++.|..+|... -......|+ +++=+++.-.++-.+|++..+
T Consensus 170 ~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~ 229 (328)
T COG5536 170 LEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSV 229 (328)
T ss_pred HHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccch
Confidence 455566777899999999876 333344554 455566666777777776554
No 440
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=51.61 E-value=35 Score=20.22 Aligned_cols=25 Identities=12% Similarity=0.005 Sum_probs=11.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 005603 453 WKLLALILSADQRLKDAQSIVDFSL 477 (688)
Q Consensus 453 ~~~la~~~~~~~~~~~A~~~~~~al 477 (688)
|..+...+.+.|+++.|..+++...
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444445555555555544443
No 441
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=51.34 E-value=2.6e+02 Score=27.80 Aligned_cols=158 Identities=15% Similarity=0.029 Sum_probs=93.2
Q ss_pred hcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcc--------cchhhHHHHHH
Q 005603 303 VTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTS--------QKEHFLAEAYK 374 (688)
Q Consensus 303 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~~ 374 (688)
..+++.+.++.+++.+..+|--.+..+..+.++.+.| ++.+...++.-+ ...+.+++. ........+..
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el--~~fL~RlP~L~~L~F~DGtPFad~~T~~ 187 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDEL--AAFLERLPGLLELKFSDGTPFADDETRA 187 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHH--HHHHHhCcChhhcccCCCCCCCCHHHHH
Confidence 6678899999999999999988999999999999999 566555555443 011111111 11111123333
Q ss_pred HHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC--CcH
Q 005603 375 FLGICYGNVARKSISDTERVFFQKEALESLNCAFLNER--EDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAG--NSG 450 (688)
Q Consensus 375 ~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~~ 450 (688)
++...-...+.. ..+ .....+ .+......-+......+.++.|+..++..+...+. +..
T Consensus 188 WL~~~~~~~~~~-----------~~~------~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf 250 (301)
T TIGR03362 188 WLAQHATRSNAA-----------SVA------PVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERF 250 (301)
T ss_pred HHHhcccccccc-----------ccc------ccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHH
Confidence 333211110000 000 000011 11233334467778888999999998876553322 222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 005603 451 RGWKLLALILSADQRLKDAQSIVDFSLDEA 480 (688)
Q Consensus 451 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 480 (688)
...+.++.++...|.++-|...+....+..
T Consensus 251 ~~rL~~A~l~~~~g~~~lA~~ll~~L~~~~ 280 (301)
T TIGR03362 251 HWRLLLARLLEQAGKAELAQQLYAALDQQI 280 (301)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 345567888899999999999998887644
No 442
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=51.14 E-value=1.4e+02 Score=25.42 Aligned_cols=54 Identities=20% Similarity=0.137 Sum_probs=40.4
Q ss_pred HHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhH
Q 005603 299 YALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQ 352 (688)
Q Consensus 299 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 352 (688)
.++..+|+-+..-+.+..+.+-...+++.+..+|.+|-+.|+..+|-++++++.
T Consensus 94 d~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 456677888888888888876666688999999999999999999999999986
No 443
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=50.91 E-value=1.6e+02 Score=25.11 Aligned_cols=37 Identities=11% Similarity=0.029 Sum_probs=21.3
Q ss_pred HHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHc
Q 005603 461 SADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQ 499 (688)
Q Consensus 461 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~ 499 (688)
...+.....+.+++..+..++ .+...+..+..++...
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~--~~~~~~~~li~ly~~~ 54 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNS--ENPALQTKLIELYAKY 54 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCc--cchhHHHHHHHHHHHH
Confidence 344556666666666665554 4555556666666543
No 444
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=50.56 E-value=34 Score=25.62 Aligned_cols=18 Identities=17% Similarity=0.300 Sum_probs=12.1
Q ss_pred cCChHHHHHHHHHHHHHH
Q 005603 499 QEQPKQAIGTYRILLAMI 516 (688)
Q Consensus 499 ~g~~~~A~~~~~~al~~~ 516 (688)
.|++++|+.+|..+++.+
T Consensus 19 ~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 19 KGNAEEAIELYTEAVELC 36 (75)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 466777777777776653
No 445
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=50.19 E-value=65 Score=24.17 Aligned_cols=31 Identities=16% Similarity=0.306 Sum_probs=24.7
Q ss_pred HHHHhhhhHHhhCChHHHHHHHHHHHHHHHh
Q 005603 143 AILLKAKSLEELGHCKEAAKECKIILDIVES 173 (688)
Q Consensus 143 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~ 173 (688)
.+..+|.-+.+.|++++|+..|+..++.+-.
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q 38 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKAIEVLSQ 38 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 3557788889999999999999877776543
No 446
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=49.94 E-value=1.4e+02 Score=28.28 Aligned_cols=33 Identities=24% Similarity=0.270 Sum_probs=24.1
Q ss_pred HHHHHHHHH---------HcCCHHHHHHHHHHHHcccCCCCC
Q 005603 652 WMNLGLISK---------MEGSLQQAADYFQAAYELKLSAPV 684 (688)
Q Consensus 652 ~~~lg~~~~---------~~g~~~~A~~~~~~al~l~p~~~~ 684 (688)
+...|..+. ..++...|..++++|++++|+..+
T Consensus 172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GV 213 (230)
T PHA02537 172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGV 213 (230)
T ss_pred HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCCh
Confidence 444666663 446788999999999999987654
No 447
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=49.87 E-value=55 Score=28.19 Aligned_cols=50 Identities=10% Similarity=-0.092 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcC
Q 005603 414 DPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQ 464 (688)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~ 464 (688)
..+.....+...+..|++.-|.++.+.++..+|++. .+...++.++..+|
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~-~ar~l~A~al~~lg 118 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNE-EARQLKADALEQLG 118 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-H-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHHH
Confidence 445666667777777888888888888887788777 77777777665554
No 448
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=49.78 E-value=40 Score=19.94 Aligned_cols=27 Identities=22% Similarity=0.175 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHh
Q 005603 547 TWQDLATIYMKLGSLPDAEICTEKAKS 573 (688)
Q Consensus 547 ~~~~la~~~~~~g~~~~A~~~~~~al~ 573 (688)
.|..+...+.+.|+++.|...++...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455666677777777777777766554
No 449
>TIGR02498 type_III_ssaH type III secretion system protein, SsaH family. This family describes a small protein, always smaller than 100 amino acids, encoded in pathogenicity islands for bacterial type III secretion systems in various strains of Yersinia, Salmonella, and enteropathogenic E. coli, as well as Chromobacterium violaceum and Citrobacter rodentium. Although strictly associated with type III secretion systems, this protein seems not yet to have been characterized as part of the apparatus or as an effector protein.
Probab=49.56 E-value=1.1e+02 Score=23.00 Aligned_cols=61 Identities=11% Similarity=0.043 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHh
Q 005603 291 AEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKD 351 (688)
Q Consensus 291 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 351 (688)
...+...+.+-...|-..+|..++.-.-.+.|+........+..++..|+..+|+..+..+
T Consensus 6 ~~L~VEaalAavNH~L~~ea~ailnalP~li~D~~~r~vcea~llfGL~~~~~A~~~L~~~ 66 (79)
T TIGR02498 6 NKLVVEAALAAVNHSLPKEAHSILNALPQIIPDKKDRLVCEAILLFGLNHKNDAVKLLENM 66 (79)
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHHhcccccCCHhHHHHHHHHHHHhcCcHHHHHHHHhcC
Confidence 4456677788888999999999999888888988888899999999999999999888765
No 450
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=49.42 E-value=1.8e+02 Score=28.36 Aligned_cols=112 Identities=11% Similarity=0.050 Sum_probs=65.9
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCC--ChhHHHHHHHH---HHHcCCH----HHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005603 553 TIYMKLGSLPDAEICTEKAKSIEFY--SPGSWHTTGML---FEAQSQY----KEALVSFSISLAIEPDYIPSIISTAEIL 623 (688)
Q Consensus 553 ~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~---~~~~g~~----~~A~~~~~~al~~~p~~~~~~~~la~~~ 623 (688)
..+...++|++=...+.+......+ ..+..+..+.. ....... ..-...++.-++..|++..++..+|..+
T Consensus 8 r~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~~ 87 (277)
T PF13226_consen 8 RELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMYW 87 (277)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 4456678888877777777653322 11111111111 1111111 1345566666777898888888888776
Q ss_pred HHhC------CCC--------------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005603 624 MKLG------RQS--------------MPIARSFLMNALRLEPTNHDAWMNLGLISKMEGS 664 (688)
Q Consensus 624 ~~~g------~~~--------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 664 (688)
.... .+. .+.|...+.+++.++|....+...+-.+-...|.
T Consensus 88 ~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fge 148 (277)
T PF13226_consen 88 VHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGE 148 (277)
T ss_pred HHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCC
Confidence 5431 111 4578888888888998887777766665555544
No 451
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=49.10 E-value=59 Score=27.98 Aligned_cols=47 Identities=19% Similarity=0.093 Sum_probs=24.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC
Q 005603 582 WHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGR 628 (688)
Q Consensus 582 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 628 (688)
....+.-....|++.-|....+.++..+|++..+...++.++.++|.
T Consensus 73 vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 73 VLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 33444444555566666666666666666666555555555555443
No 452
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.66 E-value=2.9e+02 Score=27.36 Aligned_cols=103 Identities=15% Similarity=0.010 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCH-------HHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcc
Q 005603 291 AEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRA-------ERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTS 363 (688)
Q Consensus 291 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 363 (688)
..+..+|+.+|.+.++|..|...+.-+-...-... ..+..+|..|...++..+|..+..++- +-....
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaS-----il~a~~ 177 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRAS-----ILQAES 177 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-----Hhhhcc
Q ss_pred cchhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHH
Q 005603 364 QKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFL 409 (688)
Q Consensus 364 ~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 409 (688)
.++.+........+.++-..+++ -+|-..|.+...
T Consensus 178 ~Ne~Lqie~kvc~ARvlD~krkF-----------lEAAqrYyels~ 212 (399)
T KOG1497|consen 178 SNEQLQIEYKVCYARVLDYKRKF-----------LEAAQRYYELSQ 212 (399)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
No 453
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=47.01 E-value=1.8e+02 Score=26.56 Aligned_cols=47 Identities=9% Similarity=-0.063 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 005603 468 DAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQ 517 (688)
Q Consensus 468 ~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 517 (688)
..++..++.+...| ++.++..++.++...|+.++|....+++....|
T Consensus 129 ~~~~~a~~~l~~~P---~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 129 AYIEWAERLLRRRP---DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33444445555555 455666666666666666666666666666655
No 454
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.67 E-value=3.5e+02 Score=32.04 Aligned_cols=140 Identities=11% Similarity=-0.041 Sum_probs=78.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhH
Q 005603 294 MDHLTYALSVTGQFELLAEYVEQALPGIYNR----AERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFL 369 (688)
Q Consensus 294 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 369 (688)
|......+.+.+..+.+.+.-.++++.-|++ +.....+-.-+...|.+.+|...+-+. .+...+
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~n------------pdserr 1053 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRN------------PDSERR 1053 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcC------------CcHHHH
Confidence 3444556667777777777777766644443 334445555667778888776544333 123344
Q ss_pred HHHHHHHHHHHHhhhhhccc-hHHhhHHHHHHHH-HHHHHHHcCCCCHHHHHHH-HHHHHHcCCHHHHHH-HHHHHHhhc
Q 005603 370 AEAYKFLGICYGNVARKSIS-DTERVFFQKEALE-SLNCAFLNEREDPEMMYYL-GLEHAVQRNVEAAFD-YAIMYSDTV 445 (688)
Q Consensus 370 ~~~~~~lg~~~~~~~~~~~~-~~~~~~~~~~A~~-~~~~al~~~p~~~~~~~~l-a~~~~~~g~~~~A~~-~~~~~l~~~ 445 (688)
..+...+-.++...|..... ...-.|..++-.. +++.+-...|-...-+|.+ =..+...+++.+|-. +|+.+..+.
T Consensus 1054 rdcLRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~ 1133 (1480)
T KOG4521|consen 1054 RDCLRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLE 1133 (1480)
T ss_pred HHHHHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhc
Confidence 56677777777777776433 2222444455565 5555555555443333333 334466777777654 455555543
No 455
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.08 E-value=1.3e+02 Score=30.95 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=20.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHc
Q 005603 652 WMNLGLISKMEGSLQQAADYFQAAYE 677 (688)
Q Consensus 652 ~~~lg~~~~~~g~~~~A~~~~~~al~ 677 (688)
+..-|.+.+.+|+.++|.++++.+..
T Consensus 270 ~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 270 ELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 34458888889999999999988764
No 456
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=45.07 E-value=4.5e+02 Score=28.71 Aligned_cols=140 Identities=18% Similarity=0.048 Sum_probs=81.8
Q ss_pred HHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchhhHHHHHHHHHHHHHhhh--hhccchHHhhHHHHHHHHHHHHHHHcC
Q 005603 334 CYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVA--RKSISDTERVFFQKEALESLNCAFLNE 411 (688)
Q Consensus 334 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~--~~~~~~~~~~~~~~~A~~~~~~al~~~ 411 (688)
++...|+.++|+..+++.. ..... +......+.++...+ .. ..-..+|+...+.+
T Consensus 318 lLl~~~~l~eal~~~e~~c--------~~~~~----~lpi~~~~~lle~~d~~~~-----------~~l~~~~e~~~~~~ 374 (547)
T PF14929_consen 318 LLLIGGRLKEALNELEKFC--------ISSTC----ALPIRLRAHLLEYFDQNNS-----------SVLSSCLEDCLKKD 374 (547)
T ss_pred EEeccccHHHHHHHHHHhc--------cCCCc----cchHHHHHHHHHHhCcccH-----------HHHHHHHHHHhcCC
Confidence 3444588999988887753 11111 222333344444444 33 66678999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---HhhcCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHH-------Hhhc
Q 005603 412 REDPEMMYYLGLEHAVQRNVEAAFDYAIMY---SDTVAGNSGRGWKLLALILSA-DQRLKDAQSIVDFS-------LDEA 480 (688)
Q Consensus 412 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~---l~~~p~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a-------l~~~ 480 (688)
|........+...+.. ...+.+.++-+ +...|. . .+|..++.++.+ .++++.-.+....+ ++..
T Consensus 375 P~~~~~le~l~~~~~~---~~~~~~Lle~i~~~l~~~~s-~-~iwle~~~~~l~~~~~~~~~~e~~~~~l~vlf~~LDf~ 449 (547)
T PF14929_consen 375 PTMSYSLERLILLHQK---DYSAEQLLEMIALHLDLVPS-H-PIWLEFVSCFLKNPSRFEDKEEDHKSALKVLFEFLDFA 449 (547)
T ss_pred CcHHHHHHHHHhhhhh---HHHHHHHHHHHHHHhhcCCC-c-hHHHHHHHHHHhccccccccHHHHHHHHhcchhccccc
Confidence 9887776666666555 44455555522 344544 4 899999999888 56665444444444 3333
Q ss_pred CCCCcHHHHHHHHHHHHHcCC
Q 005603 481 GSMDQLELLRLKAVLQIAQEQ 501 (688)
Q Consensus 481 p~~~~~~~~~~la~~~~~~g~ 501 (688)
....+..+|..++...-....
T Consensus 450 ~~r~n~~aW~~l~~~l~~i~~ 470 (547)
T PF14929_consen 450 GWRKNIQAWKLLAKKLPKIFD 470 (547)
T ss_pred ccccccHHHHHHHHHhhHhhh
Confidence 322455667666655544433
No 457
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=44.89 E-value=81 Score=26.18 Aligned_cols=59 Identities=15% Similarity=0.019 Sum_probs=41.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCC---------------hhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005603 548 WQDLATIYMKLGSLPDAEICTEKAKSIEFYS---------------PGSWHTTGMLFEAQSQYKEALVSFSISL 606 (688)
Q Consensus 548 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al 606 (688)
+..+|+..++.+++-.++-.|++|+.+..+- ....+++|..+..+|+.+=.+++++-|-
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlAS 77 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLAS 77 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHH
Confidence 4567888888888888999998888753211 1235677777777777777777765543
No 458
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=44.12 E-value=48 Score=24.87 Aligned_cols=18 Identities=17% Similarity=0.113 Sum_probs=14.5
Q ss_pred HcCChhHHHHHHHHHHhc
Q 005603 557 KLGSLPDAEICTEKAKSI 574 (688)
Q Consensus 557 ~~g~~~~A~~~~~~al~~ 574 (688)
..|++++|+.+|..+++.
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 358899999999888774
No 459
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=43.60 E-value=86 Score=23.67 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=17.3
Q ss_pred HHHcCCHHHHHHHHHHhhCC
Q 005603 204 WIKAGLLEEAIIAYRRALVK 223 (688)
Q Consensus 204 ~~~~g~~~eA~~~y~~al~~ 223 (688)
.-+.|++++|+.+|..++..
T Consensus 16 ~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 16 LDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHhccHHHHHHHHHHHHHH
Confidence 45889999999999999876
No 460
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=43.54 E-value=2.5e+02 Score=25.37 Aligned_cols=183 Identities=14% Similarity=0.101 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHh-hhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHh
Q 005603 370 AEAYKFLGICYGN-VARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAV-----QRNVEAAFDYAIMYSD 443 (688)
Q Consensus 370 ~~~~~~lg~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----~g~~~~A~~~~~~~l~ 443 (688)
++....||..+.. +.++ ++|..+|+.--..+ ..+..-+.+|..++. .+++..|++.+..+-+
T Consensus 34 Pe~C~lLgdYlEgi~knF-----------~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~ 101 (248)
T KOG4014|consen 34 PESCQLLGDYLEGIQKNF-----------QAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD 101 (248)
T ss_pred chHHHHHHHHHHHHHHHH-----------HHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc
Confidence 4666677766544 3344 88888887643322 346667777766543 4578899999988876
Q ss_pred hcCCCcHHHHHHHHHHHHHc-----C--CHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 005603 444 TVAGNSGRGWKLLALILSAD-----Q--RLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMI 516 (688)
Q Consensus 444 ~~p~~~~~~~~~la~~~~~~-----~--~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 516 (688)
. +.+ .+...+|.++..- + +..+|++++.++-+.. +..+.+.+...++.-. ++ +....
T Consensus 102 ~--n~~-~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~----~~~aCf~LS~m~~~g~--~k-------~~t~a 165 (248)
T KOG4014|consen 102 A--NIP-QACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE----DGEACFLLSTMYMGGK--EK-------FKTNA 165 (248)
T ss_pred c--CCH-HHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC----CchHHHHHHHHHhccc--hh-------hcccC
Confidence 3 445 7777888777543 2 3678999999987765 3455555555554321 11 11111
Q ss_pred HhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHc----
Q 005603 517 QAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQ---- 592 (688)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---- 592 (688)
|. ...|. ..+..+.-..+.+.|.++--++-++. ++.+..++...|..-
T Consensus 166 p~--------------------~g~p~------~~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~ 217 (248)
T KOG4014|consen 166 PG--------------------EGKPL------DRAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVP 217 (248)
T ss_pred CC--------------------CCCCc------chhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCC
Confidence 11 11111 12334445567788888888888875 455666666665432
Q ss_pred CCHHHHHHHHHHHHhc
Q 005603 593 SQYKEALVSFSISLAI 608 (688)
Q Consensus 593 g~~~~A~~~~~~al~~ 608 (688)
.+-++|..+-.++.++
T Consensus 218 Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 218 KDEDQAEKYKDRAKEI 233 (248)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 2566777776666654
No 461
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.62 E-value=6.6e+02 Score=29.96 Aligned_cols=192 Identities=10% Similarity=0.050 Sum_probs=108.8
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccc---cccccccccCCcch--HHHHHHHHHHHHHcC
Q 005603 485 QLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKT---KYITSEAPSVKNLE--IATWQDLATIYMKLG 559 (688)
Q Consensus 485 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~la~~~~~~g 559 (688)
.....+.+|.+|...|...+|+..|.++..-.-... .+....... .....+.-...+.. ...|....+++...+
T Consensus 919 k~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~-aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn 997 (1480)
T KOG4521|consen 919 KPVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGN-ALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHN 997 (1480)
T ss_pred HHHHHHhhheeeecCCchHHHHHHHHHHhhccccHH-HHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhc
Confidence 344567788888888999999999888876432211 111100000 00001111111111 334555667788889
Q ss_pred ChhHHHHHHHHHHhcCCCCh----hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCCC--
Q 005603 560 SLPDAEICTEKAKSIEFYSP----GSWHTTGMLFEAQSQYKEALVSFSISLAIEPDY---IPSIISTAEILMKLGRQS-- 630 (688)
Q Consensus 560 ~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~-- 630 (688)
-.+.+.+.-.+|++.-|++. .....+-.-+...|.+-+|.... -.+|+. -.++..+..+++..|+.+
T Consensus 998 ~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai----~~npdserrrdcLRqlvivLfecg~l~~L 1073 (1480)
T KOG4521|consen 998 HAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI----LRNPDSERRRDCLRQLVIVLFECGELEAL 1073 (1480)
T ss_pred cHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH----HcCCcHHHHHHHHHHHHHHHHhccchHHH
Confidence 99999999999998765432 23444445566778887776544 335653 246677788888888875
Q ss_pred -------h-HHHHH-HHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHH-HHHHHHHcccCC
Q 005603 631 -------M-PIARS-FLMNALRLEPTNH-DAWMNLGLISKMEGSLQQAA-DYFQAAYELKLS 681 (688)
Q Consensus 631 -------~-~~A~~-~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~-~~~~~al~l~p~ 681 (688)
+ ++-.. .++.+-+..|... ..+..|--.+...+++.+|. -+|+.+..+..+
T Consensus 1074 ~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~se 1135 (1480)
T KOG4521|consen 1074 ATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLESE 1135 (1480)
T ss_pred hhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhccc
Confidence 1 12222 3344444444332 33444445557778877765 567777766543
No 462
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=41.74 E-value=3.8e+02 Score=26.90 Aligned_cols=190 Identities=15% Similarity=0.089 Sum_probs=109.9
Q ss_pred CCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 005603 429 RNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGT 508 (688)
Q Consensus 429 g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~ 508 (688)
+--++|+..-.-...+.|..+ +++-.++.++++..+... ..+.+ .....+-..-.-....+-.+++...
T Consensus 210 ~Lc~EairLgRll~~L~p~EP-E~~GL~ALmll~~sR~~A---------R~~~~-G~~vlL~dQDr~lW~r~lI~eg~al 278 (415)
T COG4941 210 DLCDEAIRLGRLLARLLPGEP-EALGLLALMLLQESRRPA---------RFDAD-GEPVLLEDQDRSLWDRALIDEGLAL 278 (415)
T ss_pred hHHHHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHhhhhh---------ccCCC-CCeeeccccchhhhhHHHHHHHHHH
Confidence 345888888888889999988 888888877665433221 11110 0011111111122233445667777
Q ss_pred HHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHH-----cCChhHHHHHHHHHHhcCCCChhHHH
Q 005603 509 YRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMK-----LGSLPDAEICTEKAKSIEFYSPGSWH 583 (688)
Q Consensus 509 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~ 583 (688)
+.+++.... |.-....-.++.++.. .-+|..-..+|+-...+.|. |.+-.
T Consensus 279 l~rA~~~~~------------------------pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~L 333 (415)
T COG4941 279 LDRALASRR------------------------PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTL 333 (415)
T ss_pred HHHHHHcCC------------------------CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEee
Confidence 777766411 1112222223333322 34566666677766666664 44445
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005603 584 TTGMLFEAQSQYKEALVSFSISLAI--EPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLG 656 (688)
Q Consensus 584 ~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg 656 (688)
+.+.......-...++...+-.... -.+....+...|.++.++|+.+ +|...|++++.+.++..+..+.+.
T Consensus 334 NRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~--eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 334 NRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVE--EARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred hHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChH--HHHHHHHHHHHhcCChHHHHHHHH
Confidence 5555555555566666666554443 2234456677888999999988 999999999998887766555444
No 463
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=41.57 E-value=51 Score=19.81 Aligned_cols=29 Identities=34% Similarity=0.554 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHcc
Q 005603 650 DAWMNLGLISKME----GSLQQAADYFQAAYEL 678 (688)
Q Consensus 650 ~~~~~lg~~~~~~----g~~~~A~~~~~~al~l 678 (688)
.+.+.+|.+|..- .+..+|..+|+++.+.
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 3566677776532 3678888888877654
No 464
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=41.46 E-value=4.2e+02 Score=27.33 Aligned_cols=55 Identities=13% Similarity=-0.124 Sum_probs=40.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCC-----hhHHHHH--HHHHHHcCCHHHHHHHHHH
Q 005603 550 DLATIYMKLGSLPDAEICTEKAKSIEFYS-----PGSWHTT--GMLFEAQSQYKEALVSFSI 604 (688)
Q Consensus 550 ~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l--g~~~~~~g~~~~A~~~~~~ 604 (688)
..+...+..++|..|...|.++....+.. ...+..+ |..++..-++++|.+.+++
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 35557788999999999999999875421 2233444 4455677799999999986
No 465
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=41.24 E-value=59 Score=36.10 Aligned_cols=102 Identities=13% Similarity=0.114 Sum_probs=76.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCC----hhHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005603 550 DLATIYMKLGSLPDAEICTEKAKSIEFYS----PGSWHTTGMLFEA--QSQYKEALVSFSISLAIEPDYIPSIISTAEIL 623 (688)
Q Consensus 550 ~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 623 (688)
.-++..+..+++.+|.--|..++.+-|.+ .....+.+.++.. .|++.+++.-..-++...|....++...+.+|
T Consensus 58 ~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y 137 (748)
T KOG4151|consen 58 EEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKY 137 (748)
T ss_pred hhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHH
Confidence 34667777888888877788888877732 3345555665554 45888888888888888999888888888888
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCCCHHHHH
Q 005603 624 MKLGRQSMPIARSFLMNALRLEPTNHDAWM 653 (688)
Q Consensus 624 ~~~g~~~~~~A~~~~~~al~~~p~~~~~~~ 653 (688)
...++.+ -|.+.+.-.....|.+..+.-
T Consensus 138 ~al~k~d--~a~rdl~i~~~~~p~~~~~~e 165 (748)
T KOG4151|consen 138 EALNKLD--LAVRDLRIVEKMDPSNVSASE 165 (748)
T ss_pred HHHHHHH--HHHHHHHHHhcCCCCcchHHH
Confidence 8888877 788877777777888755443
No 466
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=40.65 E-value=4.9e+02 Score=27.94 Aligned_cols=55 Identities=25% Similarity=0.270 Sum_probs=29.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHH-hhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005603 457 ALILSADQRLKDAQSIVDFSL-DEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRIL 512 (688)
Q Consensus 457 a~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 512 (688)
++++.+.|+...|..++.+.- .+.+. ...+.-...+.+.....++..|...+.+.
T Consensus 70 a~al~~e~k~~qA~~Ll~ql~~~Ltd~-Q~~~~~LL~ael~la~~q~~~Al~~L~~~ 125 (604)
T COG3107 70 ARALVEEGKTAQAQALLNQLPQELTDA-QRAEKSLLAAELALAQKQPAAALQQLAKL 125 (604)
T ss_pred HHHHHHcCChHHHHHHHHhccccCCHH-HHHHHHHHHHHHHHhccChHHHHHHHhhc
Confidence 455666666666666666654 33321 22333344555666666666666655544
No 467
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=40.23 E-value=60 Score=20.02 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=17.6
Q ss_pred HHHHHHH--HHHHHcC-----CHHHHHHHHHHHHcc
Q 005603 650 DAWMNLG--LISKMEG-----SLQQAADYFQAAYEL 678 (688)
Q Consensus 650 ~~~~~lg--~~~~~~g-----~~~~A~~~~~~al~l 678 (688)
.+.+.+| .+|..-. ++++|..+|++|.+.
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 4566677 4443322 467788888777654
No 468
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=39.56 E-value=3.1e+02 Score=25.96 Aligned_cols=106 Identities=20% Similarity=0.052 Sum_probs=54.1
Q ss_pred HHHhcCCHHHHHHHHHHhcCCC---CCCH---------HHHHHHHHHHHHcCCcHHH--HHHHHHhHHHHHhHhhhcccc
Q 005603 300 ALSVTGQFELLAEYVEQALPGI---YNRA---------ERWYILALCYSAAGQNEAA--LNLLKKDQVSRGVIQSTTSQK 365 (688)
Q Consensus 300 ~~~~~g~~~~A~~~~~~~l~~~---p~~~---------~~~~~la~~~~~~g~~~~A--~~~~~~~l~~~~~~~~~~~~~ 365 (688)
-.+..|+|+.|+++.+-++... |+.. +-...-+......|+.-+. ...+..+. . ...-|
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~------~-~~dmp 164 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLT------T-EWDMP 164 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHH------h-cCCCC
Confidence 3456677777777777776543 2211 1222334444455542211 11122221 1 12345
Q ss_pred hhhHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCC
Q 005603 366 EHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNERED 414 (688)
Q Consensus 366 ~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 414 (688)
+...+..+...|..+....+-.. -...+....|+.++++++.++|+.
T Consensus 165 d~vrAKl~K~~G~~llr~~~g~~--~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 165 DEVRAKLYKAAGYLLLRNEKGEP--IGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred hHHHHHHHHHHHHHHhhcccCCC--ccCcccHHHHHHHHHHHHHhCCCC
Confidence 56667778888887743110000 000112288999999999999864
No 469
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=38.97 E-value=1e+02 Score=24.62 Aligned_cols=54 Identities=17% Similarity=0.065 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHh
Q 005603 293 IMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKD 351 (688)
Q Consensus 293 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 351 (688)
+-......++..|+|++|....+.. . .|+.--.+|.|-.+.|-.+.+..-+.++
T Consensus 41 v~lIRlsSLmNrG~Yq~Al~l~~~~---~--~pdlepw~ALce~rlGl~s~l~~rl~rl 94 (115)
T TIGR02508 41 VQLIRLSSLMNRGDYQSALQLGNKL---C--YPDLEPWLALCEWRLGLGSALESRLNRL 94 (115)
T ss_pred HHHHHHHHHHccchHHHHHHhcCCC---C--CchHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3344556788999999999988765 1 3444445667778888877766655554
No 470
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=38.62 E-value=1.5e+02 Score=30.81 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=18.2
Q ss_pred hHHHHHHcCCHHHHHHHHHHhhCC
Q 005603 200 LPHLWIKAGLLEEAIIAYRRALVK 223 (688)
Q Consensus 200 l~~~~~~~g~~~eA~~~y~~al~~ 223 (688)
++.-+...|.++.|+.+++|=+-.
T Consensus 124 laadhvAAGsFetAm~LLnrQiGi 147 (422)
T PF06957_consen 124 LAADHVAAGSFETAMQLLNRQIGI 147 (422)
T ss_dssp SHHHHHHCT-HHHHHHHHHHHC-B
T ss_pred cHHHHHHhCCHHHHHHHHHHHhCc
Confidence 455678899999999999997765
No 471
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=38.55 E-value=82 Score=35.02 Aligned_cols=84 Identities=18% Similarity=0.163 Sum_probs=64.6
Q ss_pred CCcchHHHHHHHHHHHHH--cCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 005603 540 VKNLEIATWQDLATIYMK--LGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSII 617 (688)
Q Consensus 540 ~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 617 (688)
+++.......+.+.++.. .|+|..++.-..-++...|....++...+.+|...+.++-|++...-.....|.+..+..
T Consensus 86 ~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~e 165 (748)
T KOG4151|consen 86 DHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASE 165 (748)
T ss_pred cchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Confidence 344556666777777765 568889998888899999998888988899999999999999988878888898865544
Q ss_pred HHHHHH
Q 005603 618 STAEIL 623 (688)
Q Consensus 618 ~la~~~ 623 (688)
....+.
T Consensus 166 if~elk 171 (748)
T KOG4151|consen 166 IFEELK 171 (748)
T ss_pred HHHHHH
Confidence 333333
No 472
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.31 E-value=1.2e+02 Score=24.00 Aligned_cols=33 Identities=24% Similarity=0.251 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcccCCC
Q 005603 650 DAWMNLGLISKMEGSLQQAADYFQAAYELKLSA 682 (688)
Q Consensus 650 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 682 (688)
..+..||.+|...|+.+.|.+-|+.--.+.|.+
T Consensus 73 G~HAhLGlLys~~G~~e~a~~eFetEKalFPES 105 (121)
T COG4259 73 GYHAHLGLLYSNSGKDEQAVREFETEKALFPES 105 (121)
T ss_pred cHHHHHHHHHhhcCChHHHHHHHHHhhhhCccc
Confidence 444445555555555555555555444444443
No 473
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=34.47 E-value=3.1e+02 Score=28.61 Aligned_cols=86 Identities=15% Similarity=0.130 Sum_probs=44.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005603 582 WHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKM 661 (688)
Q Consensus 582 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 661 (688)
+..|=.+|.+.|+..+|++.-...+-.+|++-.+..++-.-....|..+ . .+..+.+.....|+.++.-+..
T Consensus 136 y~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~~l~~s~--d------~l~DlE~~~~~~~Fir~v~~y~ 207 (471)
T KOG4459|consen 136 YQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQTMLGVSE--D------ELTDLERREHEQWFIRGVRLYS 207 (471)
T ss_pred HHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHHhccCCCc--c------cccccccchHHHHHHHHhhhcc
Confidence 4445556666677777776666666666666666555544433344333 1 1112334444555555555555
Q ss_pred cCCHHHHHHHHHHH
Q 005603 662 EGSLQQAADYFQAA 675 (688)
Q Consensus 662 ~g~~~~A~~~~~~a 675 (688)
.++++.....++.|
T Consensus 208 ~~d~~~~v~~ve~A 221 (471)
T KOG4459|consen 208 GEDPRQCVPEVELA 221 (471)
T ss_pred ccCchhcchhHHHH
Confidence 55554444433333
No 474
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=34.41 E-value=84 Score=22.93 Aligned_cols=19 Identities=21% Similarity=0.462 Sum_probs=10.4
Q ss_pred HHHcCCHHHHHHHHHHHHc
Q 005603 659 SKMEGSLQQAADYFQAAYE 677 (688)
Q Consensus 659 ~~~~g~~~~A~~~~~~al~ 677 (688)
.-..|++++|+.+|.++++
T Consensus 15 ~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 15 ADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHTTSHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 3445566666666555553
No 475
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=33.96 E-value=2.7e+02 Score=31.07 Aligned_cols=125 Identities=13% Similarity=0.037 Sum_probs=74.2
Q ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHhHhhhcccchh-hHHHHHHHHHHHHHhhhhhccchHHhhHHHHHHHH
Q 005603 324 RAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEH-FLAEAYKFLGICYGNVARKSISDTERVFFQKEALE 402 (688)
Q Consensus 324 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~ 402 (688)
.++.-.++-..|....+|+.-+++.+..- .++...+. ....+.+..+.++.+.++ .|+.++|+.
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk-------~iP~t~~vve~~nv~f~YaFALNRRNr--------~GDRakAL~ 264 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLK-------RIPDTLKVVETHNVRFHYAFALNRRNR--------PGDRAKALN 264 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHH-------hCcchhhhhccCceEEEeeehhcccCC--------CccHHHHHH
Confidence 45667777788888888887777666552 12211100 000111222333333222 344488888
Q ss_pred HHHHHHHc-CCCCHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCC
Q 005603 403 SLNCAFLN-EREDPEMMYYLGLEHA---------VQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQR 465 (688)
Q Consensus 403 ~~~~al~~-~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~ 465 (688)
..-.+++. .|-.++.+...|.+|- ..+..+.|+..|+++++..|.. .+-.+++.++...|+
T Consensus 265 ~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~--~sGIN~atLL~aaG~ 335 (1226)
T KOG4279|consen 265 TVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE--YSGINLATLLRAAGE 335 (1226)
T ss_pred HHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh--hccccHHHHHHHhhh
Confidence 87777754 4555667766666663 3456788999999999999875 344556666655553
No 476
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=33.79 E-value=52 Score=24.70 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=12.9
Q ss_pred HHhCCCChHHHHHHHHHHHHh
Q 005603 624 MKLGRQSMPIARSFLMNALRL 644 (688)
Q Consensus 624 ~~~g~~~~~~A~~~~~~al~~ 644 (688)
-..|+++ +|..+|..+++.
T Consensus 17 d~~~~y~--eA~~~Y~~~i~~ 35 (75)
T cd02677 17 EEEGDYE--AAFEFYRAGVDL 35 (75)
T ss_pred HHHhhHH--HHHHHHHHHHHH
Confidence 3447776 788877777663
No 477
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=33.55 E-value=73 Score=24.07 Aligned_cols=31 Identities=23% Similarity=0.249 Sum_probs=25.7
Q ss_pred HHHhhhhHHhhCChHHHHHHHHHHHHHHHhc
Q 005603 144 ILLKAKSLEELGHCKEAAKECKIILDIVESG 174 (688)
Q Consensus 144 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~ 174 (688)
+..+|.-.-+.|+|++|+..|...++.+-..
T Consensus 9 l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~ 39 (77)
T cd02683 9 VLKRAVELDQEGRFQEALVCYQEGIDLLMQV 39 (77)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 4567888889999999999999998876543
No 478
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=33.49 E-value=80 Score=23.05 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=24.0
Q ss_pred HHHhhhhHHhhCChHHHHHHHHHHHHHHH
Q 005603 144 ILLKAKSLEELGHCKEAAKECKIILDIVE 172 (688)
Q Consensus 144 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~~ 172 (688)
+..+|.-....|+|++|+..|...++.+.
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~ 36 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIEYLM 36 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 34678888899999999999998887644
No 479
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=33.38 E-value=3.9e+02 Score=24.63 Aligned_cols=31 Identities=10% Similarity=-0.067 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHhcCC--CChhHHHHHHHHHHH
Q 005603 561 LPDAEICTEKAKSIEF--YSPGSWHTTGMLFEA 591 (688)
Q Consensus 561 ~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~ 591 (688)
+++.++-+.+.+-.-| +++..|+..|.|+.-
T Consensus 158 ~~~l~~ri~Elvl~PPy~d~~el~~i~~m~~L~ 190 (199)
T PF04090_consen 158 YQQLIERIDELVLSPPYMDDGELWFIRGMCHLW 190 (199)
T ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHH
Confidence 4444444444444444 467777777777654
No 480
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=32.81 E-value=5.2e+02 Score=25.87 Aligned_cols=105 Identities=13% Similarity=-0.022 Sum_probs=52.4
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHHHHHHHHHHcCChhH
Q 005603 484 DQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPD 563 (688)
Q Consensus 484 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 563 (688)
...+++..++..|++.|+.+.|.+.+++.....-. +...-+-.-....+|..|....-..+
T Consensus 102 ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs-------------------~g~kiDVvf~~iRlglfy~D~~lV~~ 162 (393)
T KOG0687|consen 102 EVREAMLRKAEYYCQIGDKENALEALRKTYEKTVS-------------------LGHKIDVVFYKIRLGLFYLDHDLVTE 162 (393)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh-------------------cccchhhHHHHHHHHHhhccHHHHHH
Confidence 34566777777777777777777777666654221 01111123333445555544433333
Q ss_pred HHHHHHHHHhcCCCChh----HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005603 564 AEICTEKAKSIEFYSPG----SWHTTGMLFEAQSQYKEALVSFSISLAI 608 (688)
Q Consensus 564 A~~~~~~al~~~p~~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~~ 608 (688)
.++-.+..++... +++ .-...|.......++.+|-..|-.++..
T Consensus 163 ~iekak~liE~Gg-DWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 163 SIEKAKSLIEEGG-DWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHHHHHhCC-ChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccc
Confidence 3333333333222 111 1122344555566777777777666543
No 481
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.61 E-value=7.4e+02 Score=28.54 Aligned_cols=97 Identities=13% Similarity=0.028 Sum_probs=55.9
Q ss_pred HHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCC----------CHHHHHHHHHHHH------------HcCCHH
Q 005603 375 FLGICYGNVARKSISDTERVFFQKEALESLNCAFLNERE----------DPEMMYYLGLEHA------------VQRNVE 432 (688)
Q Consensus 375 ~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~la~~~~------------~~g~~~ 432 (688)
..|.-+...|++ .+|++.|...+-.-|- ..+.+...+..|. ..+...
T Consensus 996 ~~gy~ltt~gKf-----------~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~ 1064 (1202)
T KOG0292|consen 996 QKGYKLTTEGKF-----------GEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLE 1064 (1202)
T ss_pred HHHHhhhccCcH-----------HHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHH
Confidence 344455556777 9999999998854431 1222333333231 122344
Q ss_pred HH--HHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 005603 433 AA--FDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGS 482 (688)
Q Consensus 433 ~A--~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 482 (688)
.+ +..|-.-.++.|.+.+-++..-..++.+.+++..|-.+..+.++..|.
T Consensus 1065 ~~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~ 1116 (1202)
T KOG0292|consen 1065 QQLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPS 1116 (1202)
T ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC
Confidence 44 222222234455544334444456778889999999888888888873
No 482
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.24 E-value=4.9e+02 Score=25.44 Aligned_cols=27 Identities=26% Similarity=0.196 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005603 413 EDPEMMYYLGLEHAVQRNVEAAFDYAI 439 (688)
Q Consensus 413 ~~~~~~~~la~~~~~~g~~~~A~~~~~ 439 (688)
.++..+..+|..+...+++.+|..+|-
T Consensus 125 G~p~lH~~la~~l~~e~~~~~a~~HFl 151 (312)
T KOG3024|consen 125 GHPELHALLADKLWTEDNVEEARRHFL 151 (312)
T ss_pred CCHHHHHHHHHHHHhcccHHHHHhHhh
Confidence 456666666666666666666666553
No 483
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=32.15 E-value=2.9e+02 Score=30.25 Aligned_cols=87 Identities=14% Similarity=0.077 Sum_probs=64.7
Q ss_pred HHHHHHH---HHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005603 549 QDLATIY---MKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMK 625 (688)
Q Consensus 549 ~~la~~~---~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 625 (688)
..+|..+ .+....+.+....+.-+.-...+.......+..+...+..++|-.+|++.+..+|+ ..++..+.-+.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 86 (578)
T PRK15490 9 AALGKTCLTLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYN 86 (578)
T ss_pred HHhhhHHHHHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHh
Confidence 3444443 34455666666666555444455666777888888999999999999999999998 678888888999
Q ss_pred hCCCChHHHHHHHH
Q 005603 626 LGRQSMPIARSFLM 639 (688)
Q Consensus 626 ~g~~~~~~A~~~~~ 639 (688)
.|-.. .|...++
T Consensus 87 ~~~~~--~~~~~~~ 98 (578)
T PRK15490 87 TGLAK--DAQLILK 98 (578)
T ss_pred hhhhh--HHHHHHH
Confidence 88877 8887776
No 484
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=32.15 E-value=5.2e+02 Score=25.71 Aligned_cols=45 Identities=20% Similarity=-0.043 Sum_probs=25.5
Q ss_pred HcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 005603 462 ADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTY 509 (688)
Q Consensus 462 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~ 509 (688)
..+++.+.++.+++.+..+| .-.+.++..+.++.+.| ++.+....
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~p--fWLDgq~~~~qal~~lG-~~~~a~aI 155 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAP--FWLDGQRLSAQALERLG-YAAVAQAI 155 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCc--hhhHHHHHHHHHHHHCC-CHHHHHHH
Confidence 44555666666666666666 45555666666666666 33433333
No 485
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=31.82 E-value=1.7e+02 Score=30.59 Aligned_cols=24 Identities=13% Similarity=-0.119 Sum_probs=18.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhcC
Q 005603 458 LILSADQRLKDAQSIVDFSLDEAG 481 (688)
Q Consensus 458 ~~~~~~~~~~~A~~~~~~al~~~p 481 (688)
...++.++|..|-.+.++.+++.|
T Consensus 308 ~~~~K~KNf~tAa~FArRLLel~p 331 (422)
T PF06957_consen 308 SQAFKLKNFITAASFARRLLELNP 331 (422)
T ss_dssp HHCCCTTBHHHHHHHHHHHHCT--
T ss_pred HHHHHhccHHHHHHHHHHHHHcCC
Confidence 345678899999999999998887
No 486
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=31.58 E-value=4.7e+02 Score=25.05 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=17.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcCC
Q 005603 296 HLTYALSVTGQFELLAEYVEQALPG 320 (688)
Q Consensus 296 ~l~~~~~~~g~~~~A~~~~~~~l~~ 320 (688)
.++....+.|+|++.+.+..+++..
T Consensus 6 ~~Aklaeq~eRyddm~~~mk~~~~~ 30 (244)
T smart00101 6 YMAKLAEQAERYEEMVEFMEKVAKT 30 (244)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 4566666677777777777776654
No 487
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=30.96 E-value=87 Score=23.59 Aligned_cols=31 Identities=16% Similarity=0.025 Sum_probs=25.7
Q ss_pred HHHhhhhHHhhCChHHHHHHHHHHHHHHHhc
Q 005603 144 ILLKAKSLEELGHCKEAAKECKIILDIVESG 174 (688)
Q Consensus 144 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~ 174 (688)
+..+|.-.-+.|+|++|+..|+..++.+-..
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~ 39 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQLLIYA 39 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 4567888889999999999999999876553
No 488
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=30.88 E-value=55 Score=32.72 Aligned_cols=58 Identities=21% Similarity=0.214 Sum_probs=42.3
Q ss_pred HhhhHhhhcCCHHHHHhhhhcCCCCccccchhhhhhhhcccccccCCCCCCCCCCCCCCCcchhHHHHHHHHHHHhhhhH
Q 005603 72 LLGRLEYQRGNYDAALQVFQGIDIVSLTPRMTRAVVERTRPLRKHRSKGEKADSVPPPGLMSLHSISLLLEAILLKAKSL 151 (688)
Q Consensus 72 llg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 151 (688)
-.|+-.+.+++|++|...|..+. .+.... .| ....-..|++|+.|+++
T Consensus 46 ~~G~~~~~~~d~~~Avda~s~A~----------~l~~ei----~G------------------e~~~e~~eal~~YGksl 93 (400)
T KOG4563|consen 46 QAGRRALCNNDIDKAVDALSEAT----------ELSDEI----YG------------------EKHLETFEALFLYGKSL 93 (400)
T ss_pred HhhhHHHhcccHHHHHHHHHHHH----------HHHHHH----hh------------------hhHHHHHHHHHHHHHHH
Confidence 36999999999999999999885 111110 00 01112478999999999
Q ss_pred HhhCChHHHH
Q 005603 152 EELGHCKEAA 161 (688)
Q Consensus 152 ~~~g~~~~A~ 161 (688)
+.+++++.++
T Consensus 94 Lela~~e~~V 103 (400)
T KOG4563|consen 94 LELAKEESQV 103 (400)
T ss_pred HHHHHHHHHh
Confidence 9999998876
No 489
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=30.83 E-value=1.2e+02 Score=17.84 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=16.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005603 635 RSFLMNALRLEPTNHDAWMNLGLISK 660 (688)
Q Consensus 635 ~~~~~~al~~~p~~~~~~~~lg~~~~ 660 (688)
+.+..+++..+|.+..+|..+-.+..
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll~ 28 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLLK 28 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHHH
Confidence 44556666677777777766555543
No 490
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.80 E-value=3.3e+02 Score=28.32 Aligned_cols=26 Identities=23% Similarity=0.110 Sum_probs=21.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005603 582 WHTTGMLFEAQSQYKEALVSFSISLA 607 (688)
Q Consensus 582 ~~~lg~~~~~~g~~~~A~~~~~~al~ 607 (688)
+..-|.+.+.+|+-++|.++++.+..
T Consensus 270 ~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 270 ELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 44568899999999999999998764
No 491
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=29.71 E-value=1.1e+02 Score=23.13 Aligned_cols=23 Identities=26% Similarity=0.047 Sum_probs=11.1
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHH
Q 005603 618 STAEILMKLGRQSMPIARSFLMNAL 642 (688)
Q Consensus 618 ~la~~~~~~g~~~~~~A~~~~~~al 642 (688)
..|.-+-+.|+++ +|+.+|..++
T Consensus 11 ~~Ave~D~~g~y~--eA~~~Y~~ai 33 (76)
T cd02681 11 RLAVQRDQEGRYS--EAVFYYKEAA 33 (76)
T ss_pred HHHHHHHHccCHH--HHHHHHHHHH
Confidence 3344444445554 5555555544
No 492
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.60 E-value=8.7e+02 Score=27.53 Aligned_cols=170 Identities=10% Similarity=0.034 Sum_probs=0.0
Q ss_pred HHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhcccccccccccccc
Q 005603 460 LSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPS 539 (688)
Q Consensus 460 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (688)
+.+.+.|++|+...+......|......+...+..-+...|++++|-...-+++..
T Consensus 366 ll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn------------------------ 421 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN------------------------ 421 (846)
T ss_pred HHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc------------------------
Q ss_pred CCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 005603 540 VKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIIST 619 (688)
Q Consensus 540 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 619 (688)
+...|......+...++...-..++ -.-.|......+.+..+.... .=...|.+.++.-|.+.-.-...
T Consensus 422 ----~~~eWe~~V~~f~e~~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~----~~~~~F~e~i~~Wp~~Lys~l~i 490 (846)
T KOG2066|consen 422 ----NAAEWELWVFKFAELDQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA----SDVKGFLELIKEWPGHLYSVLTI 490 (846)
T ss_pred ----hHHHHHHHHHHhccccccchhhccC---CCCCcccCchHHHHHHHHHHH----HHHHHHHHHHHhCChhhhhhhHH
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccc
Q 005603 620 AEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELK 679 (688)
Q Consensus 620 a~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 679 (688)
.......-+.. ..-..+.+. |+..|...|+|..|...|-++.+.+
T Consensus 491 isa~~~q~~q~--Se~~~L~e~-------------La~LYl~d~~Y~~Al~~ylklk~~~ 535 (846)
T KOG2066|consen 491 ISATEPQIKQN--SESTALLEV-------------LAHLYLYDNKYEKALPIYLKLQDKD 535 (846)
T ss_pred HhhcchHHHhh--ccchhHHHH-------------HHHHHHHccChHHHHHHHHhccChH
No 493
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.57 E-value=4.8e+02 Score=25.48 Aligned_cols=30 Identities=13% Similarity=-0.147 Sum_probs=25.5
Q ss_pred CcchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 005603 541 KNLEIATWQDLATIYMKLGSLPDAEICTEK 570 (688)
Q Consensus 541 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 570 (688)
.-.++..+..+|..+..-++..+|..+|-.
T Consensus 123 k~G~p~lH~~la~~l~~e~~~~~a~~HFll 152 (312)
T KOG3024|consen 123 KYGHPELHALLADKLWTEDNVEEARRHFLL 152 (312)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHhHhhh
Confidence 345799999999999999999999988754
No 494
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=29.21 E-value=1.5e+02 Score=22.06 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=26.5
Q ss_pred HHHhhhhHHhhCChHHHHHHHHHHHHHHHhcCC
Q 005603 144 ILLKAKSLEELGHCKEAAKECKIILDIVESGLP 176 (688)
Q Consensus 144 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 176 (688)
+..+|......|++++|+..|...++.+.....
T Consensus 11 li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~ 43 (77)
T smart00745 11 LISKALKADEAGDYEEALELYKKAIEYLLEGIK 43 (77)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhc
Confidence 456788888999999999999988887666543
No 495
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=29.00 E-value=8.5e+02 Score=27.21 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=14.7
Q ss_pred HHHcCCHHHHHHHHHHHHcccCCC
Q 005603 659 SKMEGSLQQAADYFQAAYELKLSA 682 (688)
Q Consensus 659 ~~~~g~~~~A~~~~~~al~l~p~~ 682 (688)
+...|++++|++.+++. .+-|.+
T Consensus 515 ~~~~g~~~~AL~~i~~L-~liP~~ 537 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKL-DLIPLD 537 (613)
T ss_dssp HHHTT-HHHHHHHHHHT-T-S-S-
T ss_pred HHHcCCHHHHHHHHHhC-CCCCCC
Confidence 47889999999988864 455543
No 496
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.84 E-value=4.3e+02 Score=30.25 Aligned_cols=48 Identities=19% Similarity=0.188 Sum_probs=40.0
Q ss_pred ccCCCcchhhhhhhhhhhhcccHHHHHHHhhhHhhhcCCHHHHHhhhhcCC
Q 005603 44 SKVDDIQVDEAESTLKEALSLNYEEARALLGRLEYQRGNYDAALQVFQGID 94 (688)
Q Consensus 44 ~~~~~g~~~~A~~~l~~~l~~~~~~a~~llg~~~~~~g~~~~A~~~~~~~~ 94 (688)
.-+.-||++.|.+. +-.++-.+.+.-||.....+||.+-|.-+|++..
T Consensus 652 LaLe~gnle~ale~---akkldd~d~w~rLge~Al~qgn~~IaEm~yQ~~k 699 (1202)
T KOG0292|consen 652 LALECGNLEVALEA---AKKLDDKDVWERLGEEALRQGNHQIAEMCYQRTK 699 (1202)
T ss_pred eehhcCCHHHHHHH---HHhcCcHHHHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 45677888888655 6677888889999999999999999999998875
No 497
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=27.61 E-value=1e+02 Score=31.44 Aligned_cols=43 Identities=21% Similarity=0.220 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCC------------HHHHHHHHHHH
Q 005603 561 LPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQ------------YKEALVSFSIS 605 (688)
Q Consensus 561 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~------------~~~A~~~~~~a 605 (688)
...|+.++++|.. .++|.+|..+|.++..+|+ |.+|..++.+|
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kA 388 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKA 388 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHH
No 498
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=27.05 E-value=3.6e+02 Score=29.53 Aligned_cols=77 Identities=16% Similarity=-0.029 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005603 395 FFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVD 474 (688)
Q Consensus 395 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~ 474 (688)
...+.+....+.-+..........+..+..+...+..++|-.+|++.+..+|+ ..++..+.-+.+.|-..+|...++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 22 KKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND---EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred hhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc---chHHHHHHHHHhhhhhhHHHHHHH
Confidence 33444444444444333344556666777777788888888888888887777 556677777778887777777776
No 499
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=26.98 E-value=6.4e+02 Score=25.13 Aligned_cols=192 Identities=13% Similarity=-0.053 Sum_probs=101.6
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005603 400 ALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNS---GRGWKLLALILSADQRLKDAQSIVDFS 476 (688)
Q Consensus 400 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a 476 (688)
-++.+.+-....|+..++++.++...+..|+|..|-.++-......+... ..++...-..-.-..+|+.|++-+.+.
T Consensus 114 ~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rL 193 (432)
T KOG2758|consen 114 NLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRL 193 (432)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34555555566788899999999999999999999887765544433221 123332222334467899999888776
Q ss_pred Hhh---cCCCCcHHHHHHHHHHH----HHcCChHHHHHHHHHHHHHHHhhHHhhhhccccccccccccccCCcchHHHHH
Q 005603 477 LDE---AGSMDQLELLRLKAVLQ----IAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQ 549 (688)
Q Consensus 477 l~~---~p~~~~~~~~~~la~~~----~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (688)
-+. .+-......+.....+. +-.-++.++...+-.++-..|...... ....|..+.
T Consensus 194 re~IDs~~f~~~~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaI-----------------Qt~cPhllR 256 (432)
T KOG2758|consen 194 REYIDSKSFSTSAQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAI-----------------QTSCPHLLR 256 (432)
T ss_pred HHHHcccccccHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHH-----------------HhhCHHHHH
Confidence 542 22111122222222211 111222233332222222222111111 011355566
Q ss_pred HHHHHHHHc-CChhHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005603 550 DLATIYMKL-GSLPDAEICTEKAKSIEFYS-PGSWHTTGMLFEAQSQYKEALVSFSISLAI 608 (688)
Q Consensus 550 ~la~~~~~~-g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 608 (688)
.++.+.... .+...+++-+-+.++..... .+.....-.|++-.=+++.|...++++-+.
T Consensus 257 YLatAvvtnk~~rr~~lkdlvkVIqqE~ysYkDPiteFl~clyvn~DFdgAq~kl~eCeeV 317 (432)
T KOG2758|consen 257 YLATAVVTNKRRRRNRLKDLVKVIQQESYSYKDPITEFLECLYVNYDFDGAQKKLRECEEV 317 (432)
T ss_pred HHHHHhhcchHhhHHHHHHHHHHHHHhccccCCcHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 666655544 56677777777777765421 111222334555566888888877766544
No 500
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=26.83 E-value=1.1e+02 Score=25.63 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=22.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcccCC
Q 005603 653 MNLGLISKMEGSLQQAADYFQAAYELKLS 681 (688)
Q Consensus 653 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 681 (688)
..+|..+...|++++|..+|-+|+...|+
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 35788888888888888888888887764
Done!