Query 005603
Match_columns 688
No_of_seqs 1065 out of 4500
Neff 10.5
Searched_HMMs 29240
Date Tue Mar 26 18:33:44 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005603.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2107-2111//hhsearch_pdb/005603hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 1.0 1 1 318.9 38.9 457 67-684 84-585 (597)
2 2xpi_A Anaphase-promoting comp 1.0 1 1 317.4 40.2 490 43-661 92-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 310.1 41.7 384 147-664 5-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 309.6 44.7 349 285-685 27-375 (388)
5 2gw1_A Mitochondrial precursor 1.0 1 1 288.4 33.9 465 66-658 5-492 (514)
6 3fp2_A TPR repeat-containing p 1.0 1 1 282.1 38.3 441 67-617 25-500 (537)
7 2gw1_A Mitochondrial precursor 1.0 1 1 275.8 39.7 456 41-621 12-491 (514)
8 2y4t_A DNAJ homolog subfamily 1.0 1 1 269.0 36.8 332 291-668 60-444 (450)
9 3fp2_A TPR repeat-containing p 1.0 1 1 269.0 41.7 428 137-684 21-497 (537)
10 4g1t_A Interferon-induced prot 1.0 1 1 256.6 34.9 405 143-686 53-467 (472)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=318.88 Aligned_cols=457 Identities=12% Similarity=0.004 Sum_probs=296.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999866675210779989830005887742300224554201322335777888889999987524589999999998
Q 005603 67 EEARALLGRLEYQRGNYDAALQVFQGIDIVSLTPRMTRAVVERTRPLRKHRSKGEKADSVPPPGLMSLHSISLLLEAILL 146 (688)
Q Consensus 67 ~~a~~llg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~~ 146 (688)
......+++.+...|++++|+..|+++. ... |+ ..+++.
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~--~~~----------------------------p~-----------~~~~~~ 122 (597)
T 2xpi_A 84 EDYLRLWRHDALMQQQYKCAAFVGEKVL--DIT----------------------------GN-----------PNDAFW 122 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHH----------------------------CC-----------HHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHH--HHC----------------------------CC-----------CHHHHH
T ss_conf 9999999999987458347999999999--608----------------------------99-----------357999
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
Q ss_conf 66567721785899999999999987319999998887404189999999988089999709999999999996179999
Q 005603 147 KAKSLEELGHCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKALELLPHLWIKAGLLEEAIIAYRRALVKPWN 226 (688)
Q Consensus 147 ~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~ 226 (688)
.|.++...|++++|+..++.++.. +. + ..+...++.+|.+.|++++|+..|+++....
T Consensus 123 l~~~~~~~g~~~~A~~~~~~~~~~---------~~----~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 180 (597)
T 2xpi_A 123 LAQVYCCTGDYARAKCLLTKEDLY---------NR----S-------SACRYLAAFCLVKLYDWQGALNLLGETNPFR-- 180 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCGG---------GT----C-------HHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC--
T ss_pred HHHHHHHCCCHHHHHHHHHHHHCC---------CC----C-------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--
T ss_conf 999999747699999999987335---------45----6-------5089999999998866999999984248863--
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99156799999999999841866889976445787568983599999999997989864157939999999999993099
Q 005603 227 LDPKKVASVQRDLAVTLLYGGVEARLPPELKVWGPIAPKDNVEEAILLLLILMEKVASKEMEWDAEIMDHLTYALSVTGQ 306 (688)
Q Consensus 227 ~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~eea~~~l~~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 306 (688)
. .... ...+ .......|.++.+|..++.++...|+
T Consensus 181 -~-~~~~-------~~~~------------------------------------~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (597)
T 2xpi_A 181 -K-DEKN-------ANKL------------------------------------LMQDGGIKLEASMCYLRGQVYTNLSN 215 (597)
T ss_dssp -------------------------------------------------------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred -C-CCCC-------CCCC------------------------------------CCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf -2-2323-------4334------------------------------------32112351258999998899998399
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHH--------------------------------------HHHCCCCHHHHHHH
Q ss_conf 9999999997628887877999999999--------------------------------------99949909999999
Q 005603 307 FELLAEYVEQALPGIYNRAERWYILALC--------------------------------------YSAAGQNEAALNLL 348 (688)
Q Consensus 307 ~~~A~~~~~~~l~~~p~~~~~~~~la~~--------------------------------------~~~~g~~~~A~~~~ 348 (688)
+++|+..|++++...|.+...+..++.+ |...|++++|+..|
T Consensus 216 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 216 FDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 89999999999972932569999999850346156789998657742344308899999999999980731399999999
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf 99699888676210221345999999998888852210123377427899999999999981999989999999999982
Q 005603 349 KKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQ 428 (688)
Q Consensus 349 ~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 428 (688)
++++ . . +.. ...+..++.++...|++ ++|+..|++++..+|.+..++..++.++...
T Consensus 296 ~~~~------~---~-~~~--~~~~~~l~~~~~~~g~~-----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 352 (597)
T 2xpi_A 296 SSIN------G---L-EKS--SDLLLCKADTLFVRSRF-----------IDVLAITTKILEIDPYNLDVYPLHLASLHES 352 (597)
T ss_dssp HTST------T---G-GGC--HHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHHCTTCCTTHHHHHHHHHHH
T ss_pred HHHH------C---C-CCH--HHHHHHHHHHHHHHCCH-----------HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 8764------3---8-830--99999999999984689-----------9999999999972955379999999999982
Q ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 89999999999998624999579999999999982898999999999985308988099999999999991895799999
Q 005603 429 RNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGT 508 (688)
Q Consensus 429 g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~ 508 (688)
|++++|+..++++++..|.+. ..+..++.++...|++++|+..|++++...| .+...+..++.++...|++++|+..
T Consensus 353 g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~ 429 (597)
T 2xpi_A 353 GEKNKLYLISNDLVDRHPEKA-VTWLAVGIYYLCVNKISEARRYFSKSSTMDP--QFGPAWIGFAHSFAIEGEHDQAISA 429 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTSH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 777799999999985183547-9999999999983569999999999987297--7789999999999975777999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999998963973211011110012235457860699999999999982994689999999872098894679999999
Q 005603 509 YRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGML 588 (688)
Q Consensus 509 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 588 (688)
|++++...|. +..+|..++.+|...|++++|+..|++++...|.++.+|..+|.+
T Consensus 430 ~~~~~~~~~~-------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 484 (597)
T 2xpi_A 430 YTTAARLFQG-------------------------THLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVV 484 (597)
T ss_dssp HHHHHHTTTT-------------------------CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHCCC-------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9999986813-------------------------438999999999985799999999999998488876799999999
Q ss_pred HHHCCCHHHHHHHHHHHHHC------CCCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 99818789999999998803------9999-8999999999999289973999999999998299999999999999998
Q 005603 589 FEAQSQYKEALVSFSISLAI------EPDY-IPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKM 661 (688)
Q Consensus 589 ~~~~g~~~~A~~~~~~al~~------~p~~-~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 661 (688)
+...|++++|+..|+++++. .|+. ..++..++.++...|+++ +|+..++++++.+|+++.+|..+|.+|..
T Consensus 485 ~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 562 (597)
T 2xpi_A 485 AFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYD--AAIDALNQGLLLSTNDANVHTAIALVYLH 562 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 9981899999999999998532345453549999999999999804799--99999999997389973899999999998
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 39999999999999802179999
Q 005603 662 EGSLQQAADYFQAAYELKLSAPV 684 (688)
Q Consensus 662 ~g~~~~A~~~~~~al~l~p~~~~ 684 (688)
.|++++|..+|+++++++|+++.
T Consensus 563 ~g~~~~A~~~~~~~l~~~p~~~~ 585 (597)
T 2xpi_A 563 KKIPGLAITHLHESLAISPNEIM 585 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HCCHHHHHHHHHHHHHCCCCCHH
T ss_conf 17899999999999720888748
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=317.36 Aligned_cols=490 Identities=12% Similarity=0.027 Sum_probs=387.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCC
Q ss_conf 766787544566655554202548-9999986667521077998983000588774230022455420132233577788
Q 005603 43 DSKVDDIQVDEAESTLKEALSLNY-EEARALLGRLEYQRGNYDAALQVFQGIDIVSLTPRMTRAVVERTRPLRKHRSKGE 121 (688)
Q Consensus 43 ~~~~~~g~~~~A~~~l~~~l~~~~-~~a~~llg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (688)
..+...|++++|...+++++..+| ..+...+|.+++..|++++|+..|+++.. . +
T Consensus 92 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~--------------------- 147 (597)
T 2xpi_A 92 HDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--Y-N--------------------- 147 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--G-G---------------------
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHC--C-C---------------------
T ss_conf 999874583479999999996089935799999999974769999999998733--5-4---------------------
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC-------CCCCCCCCHHHHHH
Q ss_conf 88899999875245899999999986656772178589999999999998731999999-------88874041899999
Q 005603 122 KADSVPPPGLMSLHSISLLLEAILLKAKSLEELGHCKEAAKECKIILDIVESGLPNGMP-------EGFGEDCKLQEMFH 194 (688)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 194 (688)
++ ..+++.+|.++.+.|++++|...|+.. .|...+ ...... .+...
T Consensus 148 ------~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~~~~~~~~~---~~~~~ 200 (597)
T 2xpi_A 148 ------RS-----------SACRYLAAFCLVKLYDWQGALNLLGET-------NPFRKDEKNANKLLMQDGG---IKLEA 200 (597)
T ss_dssp ------TC-----------HHHHHHHHHHHHHTTCHHHHHHHHCSS-------CTTC----------CCCSS---CCHHH
T ss_pred ------CC-----------HHHHHHHHHHHHHHHHHHHHHHHHHCC-------CCCCCCCCCCCCCCCCCCC---CCHHH
T ss_conf ------56-----------508999999999886699999998424-------8863223234334321123---51258
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 99988089999709999999999996179999991567999999999998418668899764457875689835999999
Q 005603 195 KALELLPHLWIKAGLLEEAIIAYRRALVKPWNLDPKKVASVQRDLAVTLLYGGVEARLPPELKVWGPIAPKDNVEEAILL 274 (688)
Q Consensus 195 ~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~eea~~~ 274 (688)
.++..++.+|.+.|++++|+..|++++...|+.. ... ..++.. +...+..+.+...
T Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~----~~l~~~-------------------~~~~~~~~~~~~~ 256 (597)
T 2xpi_A 201 SMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCY-EAF----DQLVSN-------------------HLLTADEEWDLVL 256 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHH----HHHHHT-------------------TCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHH-HHH----HHHHHH-------------------HCCCCHHHHHHHH
T ss_conf 9999988999983998999999999997293256-999----999985-------------------0346156789998
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 99997989864157939999999999993099999999999762888787799999999999949909999999996998
Q 005603 275 LLILMEKVASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVS 354 (688)
Q Consensus 275 l~~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 354 (688)
. +...............++..++..+...|++++|...|++++.. |.+...|..++.++...|++++|+..|++++
T Consensus 257 ~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 332 (597)
T 2xpi_A 257 K-LNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKIL-- 332 (597)
T ss_dssp H-SCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--
T ss_pred H-CCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--
T ss_conf 6-57742344308899999999999980731399999999876438-8309999999999998468999999999999--
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 88676210221345999999998888852210123377427899999999999981999989999999999982899999
Q 005603 355 RGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAA 434 (688)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 434 (688)
. ..+.. ..++..++.++...|+. ++|+..+++++...|.+..++..+|..+...|++++|
T Consensus 333 ----~---~~~~~--~~~~~~l~~~~~~~g~~-----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 333 ----E---IDPYN--LDVYPLHLASLHESGEK-----------NKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp ----H---HCTTC--CTTHHHHHHHHHHHTCH-----------HHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHH
T ss_pred ----H---CCCCC--HHHHHHHHHHHHHHCCH-----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHH
T ss_conf ----7---29553--79999999999982777-----------7999999999851835479999999999983569999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999998624999579999999999982898999999999985308988099999999999991895799999999999
Q 005603 435 FDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLA 514 (688)
Q Consensus 435 ~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 514 (688)
+..|+++++..|.+. ..|..++.++...|++++|+..|++++...| .+...+..++.++...|++++|+..|++++.
T Consensus 393 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 393 RRYFSKSSTMDPQFG-PAWIGFAHSFAIEGEHDQAISAYTTAARLFQ--GTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHCTTCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT--TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999987297778-9999999999975777999999999998681--3438999999999985799999999999998
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC------CCCC-HHHHHHHHH
Q ss_conf 989639732110111100122354578606999999999999829946899999998720------9889-467999999
Q 005603 515 MIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSI------EFYS-PGSWHTTGM 587 (688)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~-~~~~~~la~ 587 (688)
..|. ++.+|..++.++...|++++|+..+++++.. .|.. ..+|..+|.
T Consensus 470 ~~~~-------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~ 524 (597)
T 2xpi_A 470 LFQY-------------------------DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGH 524 (597)
T ss_dssp HCCC-------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHH
T ss_pred HCCC-------------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 4888-------------------------767999999999981899999999999998532345453549999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 99981878999999999880399998999999999999289973999999999998299999999999999998
Q 005603 588 LFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKM 661 (688)
Q Consensus 588 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 661 (688)
++...|++++|+..++++++..|++..++..++.++...|+++ +|...++++++++|+++.++..++.+|..
T Consensus 525 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 525 AYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPG--LAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 9998047999999999999738997389999999999817899--99999999972088874899999998743
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=310.05 Aligned_cols=384 Identities=19% Similarity=0.134 Sum_probs=344.1
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
Q ss_conf 66567721785899999999999987319999998887404189999999988089999709999999999996179999
Q 005603 147 KAKSLEELGHCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKALELLPHLWIKAGLLEEAIIAYRRALVKPWN 226 (688)
Q Consensus 147 ~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~ 226 (688)
.|..+...|++++|+..|+.++.. .|+ ...++..++.++...|++++|+..+++++.
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--------~p~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~---- 61 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--------EPD-----------NTGVLLLLSSIHFQCRRLDRSAHFSTLAIK---- 61 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--------CTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--------CCC-----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----
T ss_conf 799998779999999999999984--------978-----------899999999999986899999999999976----
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99156799999999999841866889976445787568983599999999997989864157939999999999993099
Q 005603 227 LDPKKVASVQRDLAVTLLYGGVEARLPPELKVWGPIAPKDNVEEAILLLLILMEKVASKEMEWDAEIMDHLTYALSVTGQ 306 (688)
Q Consensus 227 ~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~eea~~~l~~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 306 (688)
..|.++.++..+|.++...|+
T Consensus 62 -----------------------------------------------------------~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 62 -----------------------------------------------------------QNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp -----------------------------------------------------------HCTTCHHHHHHHHHHHHHHTC
T ss_pred -----------------------------------------------------------CCCCCHHHHHHHHHHHHHCCC
T ss_conf -----------------------------------------------------------197866999999999987799
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999976288878779999999999994990999999999699888676210221345999999998888852210
Q 005603 307 FELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARK 386 (688)
Q Consensus 307 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~ 386 (688)
+++|+..|++++...|++...+..+|.++...|++++|+..+++++ ...|+. ..++..+|.++...|++
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al---------~~~p~~--~~~~~~l~~~~~~~g~~ 151 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL---------QYNPDL--YCVRSDLGNLLKALGRL 151 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH---------HHCTTC--THHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------HHCCCC--HHHHHHHHHHHHHCCCH
T ss_conf 9999999999987496539999999999998589999999999999---------759896--89999999999984689
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCH
Q ss_conf 12337742789999999999998199998999999999998289999999999998624999579999999999982898
Q 005603 387 SISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRL 466 (688)
Q Consensus 387 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~ 466 (688)
++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|... .++..+|.++...|++
T Consensus 152 -----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~~~~ 219 (388)
T 1w3b_A 152 -----------EEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFL-DAYINLGNVLKEARIF 219 (388)
T ss_dssp -----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHTTTCT
T ss_pred -----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHCCCH
T ss_conf -----------9999999999872989789999999999985999999999999985598867-9999999999985789
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 99999999998530898809999999999999189579999999999998963973211011110012235457860699
Q 005603 467 KDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIA 546 (688)
Q Consensus 467 ~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (688)
++|+..+++++...| ++..++..+|.++...|++++|+..+++++...|. .+.
T Consensus 220 ~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-------------------------~~~ 272 (388)
T 1w3b_A 220 DRAVAAYLRALSLSP--NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-------------------------FPD 272 (388)
T ss_dssp THHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-------------------------CHH
T ss_pred HHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-------------------------CHH
T ss_conf 999999999985296--87899999999999868899999999999864999-------------------------889
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999998299468999999987209889467999999999818789999999998803999989999999999992
Q 005603 547 TWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKL 626 (688)
Q Consensus 547 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 626 (688)
++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|++..++..+|.++...
T Consensus 273 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 352 (388)
T 1w3b_A 273 AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ 352 (388)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
T ss_conf 99999999998699799999999998649444999999999999848999999999999860987399997799999986
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf 89973999999999998299999999999999998399
Q 005603 627 GRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGS 664 (688)
Q Consensus 627 g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 664 (688)
|+++ +|+..|+++++.+|+++.+++++|.++..+|+
T Consensus 353 g~~~--~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 353 GKLQ--EALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCCH--HHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCHH--HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 8889--99999999986199978999859999987459
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=309.55 Aligned_cols=349 Identities=15% Similarity=0.117 Sum_probs=312.2
Q ss_pred HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 41579399999999999930999999999997628887877999999999999499099999999969988867621022
Q 005603 285 KEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQ 364 (688)
Q Consensus 285 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 364 (688)
...|.++.++..++.++...|++++|...+++++...|.+...|..+|.++...|++++|+..|++++ ...
T Consensus 27 ~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---------~~~ 97 (388)
T 1w3b_A 27 RQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHAL---------RLK 97 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---------HHC
T ss_pred HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------HCC
T ss_conf 84978899999999999986899999999999976197866999999999987799999999999998---------749
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 13459999999988888522101233774278999999999999819999899999999999828999999999999862
Q 005603 365 KEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDT 444 (688)
Q Consensus 365 ~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 444 (688)
|+. ..++..+|.++...|++ ++|+..|++++..+|+...++..+|.++...|++++|+..+++++..
T Consensus 98 p~~--~~~~~~l~~~~~~~g~~-----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 98 PDF--IDGYINLAAALVAAGDM-----------EGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp TTC--HHHHHHHHHHHHHHSCS-----------SHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCH--HHHHHHHHHHHHHCCCH-----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 653--99999999999985899-----------99999999999759896899999999999846899999999999872
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 49995799999999999828989999999999853089880999999999999918957999999999999896397321
Q 005603 445 VAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHS 524 (688)
Q Consensus 445 ~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 524 (688)
.|.+. .+|..+|.++...|++++|+..+++++...| .....+..+|.++...|++++|+..+++++...|+
T Consensus 165 ~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------ 235 (388)
T 1w3b_A 165 QPNFA-VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP--NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN------ 235 (388)
T ss_dssp CTTCH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT------
T ss_pred CCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC------
T ss_conf 98978-9999999999985999999999999985598--86799999999999857899999999999852968------
Q ss_pred HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 10111100122354578606999999999999829946899999998720988946799999999981878999999999
Q 005603 525 KNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSI 604 (688)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 604 (688)
+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..|++
T Consensus 236 -------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 296 (388)
T 1w3b_A 236 -------------------HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNT 296 (388)
T ss_dssp -------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred -------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf -------------------7899999999999868899999999999864999889999999999986997999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 88039999899999999999928997399999999999829999999999999999839999999999999802179999
Q 005603 605 SLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKLSAPV 684 (688)
Q Consensus 605 al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 684 (688)
+++..|++..++..++.++...|+++ +|+..++++++..|++..++..+|.++...|++++|+..|++++++.|+++.
T Consensus 297 al~~~p~~~~~~~~l~~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 374 (388)
T 1w3b_A 297 ALRLCPTHADSLNNLANIKREQGNIE--EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHH--HHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
T ss_conf 98649444999999999999848999--9999999998609873999977999999868889999999999861999789
Q ss_pred C
Q ss_conf 8
Q 005603 685 Q 685 (688)
Q Consensus 685 ~ 685 (688)
+
T Consensus 375 a 375 (388)
T 1w3b_A 375 A 375 (388)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 5
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=288.37 Aligned_cols=465 Identities=14% Similarity=0.062 Sum_probs=308.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 89999986667521077998983000588774230022455420132233577788888999998752458999999999
Q 005603 66 YEEARALLGRLEYQRGNYDAALQVFQGIDIVSLTPRMTRAVVERTRPLRKHRSKGEKADSVPPPGLMSLHSISLLLEAIL 145 (688)
Q Consensus 66 ~~~a~~llg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~ 145 (688)
..++...+|..++..|+|++|+..|+++. ... |. .++++
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al--~~~----------------------------p~-----------~~~~~ 43 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWAL--ELK----------------------------ED-----------PVFYS 43 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHH--HHC----------------------------CC-----------HHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HCC----------------------------CC-----------HHHHH
T ss_conf 57999998789998602789999999998--559----------------------------22-----------78998
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
Q ss_conf 86656772178589999999999998731999999888740418999999998808999970999999999999617999
Q 005603 146 LKAKSLEELGHCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKALELLPHLWIKAGLLEEAIIAYRRALVKPW 225 (688)
Q Consensus 146 ~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~ 225 (688)
.+|.++..+|++++|+..|+.++.. .|. ...++..++.++...|++++|+..|++++...+
T Consensus 44 ~la~~~~~~g~~~~A~~~~~~al~~--------~p~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 104 (514)
T 2gw1_A 44 NLSACYVSVGDLKKVVEMSTKALEL--------KPD-----------YSKVLLRRASANEGLGKFADAMFDLSVLSLNGD 104 (514)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--------CSC-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC--------CHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 6889999885499999999877606--------937-----------899999888999987668889999999995598
Q ss_pred CCCHHHHHHHHHH---HHHHHHHCCCCC-----CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 9991567999999---999998418668-----89976445787568983599999999997989864157939999999
Q 005603 226 NLDPKKVASVQRD---LAVTLLYGGVEA-----RLPPELKVWGPIAPKDNVEEAILLLLILMEKVASKEMEWDAEIMDHL 297 (688)
Q Consensus 226 ~~~~~~~~~~~~~---~a~~ll~~~~~~-----~~~~~~~~~~~~~~~~~~eea~~~l~~~~~~~~l~~~p~~~~~~~~l 297 (688)
..+......+... ............ ..+... .+.+.. .........|....+...+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~------------~~~~~~~~~~~~~~~~~~~ 168 (514)
T 2gw1_A 105 FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTEL----STQPAK------------ERKDKQENLPSVTSMASFF 168 (514)
T ss_dssp CCGGGTHHHHHHHHHHHHHHHHTTC-------------------------------------------CCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHH------------HHHHHCCCCCHHHHHHHHH
T ss_conf 751137899999999999999999999899998766512----677246------------7886344786158999998
Q ss_pred HHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHH-HHHHHHHCCCC--HHHHHH
Q ss_conf 9999930999999999997628887877999999999999---49909999999996998-88676210221--345999
Q 005603 298 TYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSA---AGQNEAALNLLKKDQVS-RGVIQSTTSQK--EHFLAE 371 (688)
Q Consensus 298 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~l~~-~~~~~~~~~~~--~~~~~~ 371 (688)
+ .+..+... .. -..|.+...++.+|.+++. .|++++|+..+++++.. +..+...+... ......
T Consensus 169 ~-------~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (514)
T 2gw1_A 169 G-------IFKPELTF--AN-YDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238 (514)
T ss_dssp T-------TSCCCCCC--SS-CCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHH
T ss_pred H-------HCCHHHHH--HH-HCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
T ss_conf 6-------25878888--87-25995888999989999876233229999999999998866542238100114827899
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 99999888885221012337742789999999999998199998999999999998289999999999998624999579
Q 005603 372 AYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGR 451 (688)
Q Consensus 372 ~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 451 (688)
++..+|.++...|++ ++|+..+++++..+|. ..++..+|.++...|++++|+..+++++...|.+. .
T Consensus 239 ~~~~~~~~~~~~~~~-----------~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~ 305 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDP-----------LGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNS-S 305 (514)
T ss_dssp HHHHHHHHHHHSSCH-----------HHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCT-H
T ss_pred HHHHHHHHHHHCCCH-----------HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH-H
T ss_conf 999999999987899-----------9999999999863864-89999999999988889999999999861386778-9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999998289899999999998530898809999999999999189579999999999998963973211011110
Q 005603 452 GWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTK 531 (688)
Q Consensus 452 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 531 (688)
++..+|.++...|++++|+..+++++...| .+..++..+|.++...|++++|+..+++++...|.
T Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------- 370 (514)
T 2gw1_A 306 VYYHRGQMNFILQNYDQAGKDFDKAKELDP--ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE------------- 370 (514)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHHHHHTCS--SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-------------
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-------------
T ss_conf 999999999980779999999999987385--02899999999999868999999999999987546-------------
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH------HHHHHHHHHHH---CCCHHHHHHHH
Q ss_conf 0122354578606999999999999829946899999998720988946------79999999998---18789999999
Q 005603 532 YITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPG------SWHTTGMLFEA---QSQYKEALVSF 602 (688)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~---~g~~~~A~~~~ 602 (688)
.+.++..+|.++...|++++|+..+++++...|.++. ++..+|.++.. .|++++|+..+
T Consensus 371 ------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~ 438 (514)
T 2gw1_A 371 ------------APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLL 438 (514)
T ss_dssp ------------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHH
T ss_pred ------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf ------------77899999999987889999999999999761233217899999999999986633258889999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99880399998999999999999289973999999999998299999999999999
Q 005603 603 SISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLI 658 (688)
Q Consensus 603 ~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 658 (688)
++++...|++..++..+|.++...|+++ +|+..++++++.+|+++.++..+...
T Consensus 439 ~~a~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~a~~~~~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 439 EKASKLDPRSEQAKIGLAQMKLQQEDID--EAITLFEESADLARTMEEKLQAITFA 492 (514)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9998758555899999999999825799--99999999987661468899999999
No 6
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=282.12 Aligned_cols=441 Identities=15% Similarity=0.066 Sum_probs=281.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999866675210779989830005887742300224554201322335777888889999987524589999999998
Q 005603 67 EEARALLGRLEYQRGNYDAALQVFQGIDIVSLTPRMTRAVVERTRPLRKHRSKGEKADSVPPPGLMSLHSISLLLEAILL 146 (688)
Q Consensus 67 ~~a~~llg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~~ 146 (688)
.++...+|..++.+|+|++|+..|+++. ... |. ..++++.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al--~~~----------------------------p~----------~~~~~~~ 64 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAI--ELD----------------------------PN----------EPVFYSN 64 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHH--HHC----------------------------TT----------CHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHC----------------------------CC----------CCHHHHH
T ss_conf 9999999999998642999999999998--638----------------------------99----------8489999
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
Q ss_conf 66567721785899999999999987319999998887404189999999988089999709999999999996179999
Q 005603 147 KAKSLEELGHCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKALELLPHLWIKAGLLEEAIIAYRRALVKPWN 226 (688)
Q Consensus 147 ~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~ 226 (688)
+|.++..+|++++|+..|+.++.. .|. ...++..++.++...|++++|+..|+ ++...++
T Consensus 65 la~~~~~~g~~~~A~~~~~~al~~--------~p~-----------~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~ 124 (537)
T 3fp2_A 65 ISACYISTGDLEKVIEFTTKALEI--------KPD-----------HSKALLRRASANESLGNFTDAMFDLS-VLSLNGD 124 (537)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--------CTT-----------CHHHHHHHHHHHHHHTCHHHHHHHHH-HHC----
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHC--------CCC-----------HHHHHHHHHHHHHHCCCHHHHHHHHH-HHHCCCC
T ss_conf 999999868999999999999860--------986-----------28999999999998389999999999-9864878
Q ss_pred CCHHHH----HHHHHHHHHHHHHCCCCCCCCCCCCCC------CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 991567----999999999998418668899764457------8756898359999999999798986415793999999
Q 005603 227 LDPKKV----ASVQRDLAVTLLYGGVEARLPPELKVW------GPIAPKDNVEEAILLLLILMEKVASKEMEWDAEIMDH 296 (688)
Q Consensus 227 ~~~~~~----~~~~~~~a~~ll~~~~~~~~~~~~~~~------~~~~~~~~~eea~~~l~~~~~~~~l~~~p~~~~~~~~ 296 (688)
...... .......+...+.......|....... ..+......+.++..+ .......+........
T Consensus 125 ~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 199 (537)
T 3fp2_A 125 FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV-----NTSSNYDTAYALLSDA 199 (537)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS-----CCCCSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHH-----HHCCCCCCHHHHHHHH
T ss_conf 78588999998778988999999999747454543450675799999744749999987-----6325646178999999
Q ss_pred HHH--------HHHHCCCHHHHHHHHHHHCCCCCCCHH-------HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999--------999309999999999976288878779-------99999999999499099999999969988867621
Q 005603 297 LTY--------ALSVTGQFELLAEYVEQALPGIYNRAE-------RWYILALCYSAAGQNEAALNLLKKDQVSRGVIQST 361 (688)
Q Consensus 297 l~~--------~~~~~g~~~~A~~~~~~~l~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 361 (688)
++. .....|++++|+..+++++...|++.. ++..+|.++...|++++|+..+++++ .
T Consensus 200 l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~------~-- 271 (537)
T 3fp2_A 200 LQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESI------N-- 271 (537)
T ss_dssp HHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------H--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH------H--
T ss_conf 98788764020688887999999999999987877404459999999999999875455789999999998------6--
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 02213459999999988888522101233774278999999999999819999899999999999828999999999999
Q 005603 362 TSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMY 441 (688)
Q Consensus 362 ~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 441 (688)
..|. ..++..+|.++...+++ ++|+..+++++..+|.++.++..+|.++...|++++|+..++++
T Consensus 272 -~~~~---~~~~~~l~~~~~~~~~~-----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 272 -LHPT---PNSYIFLALTLADKENS-----------QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp -HCCC---HHHHHHHHHHTCCSSCC-----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -CCCC---CHHHHHHHHHHHHHCCH-----------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf -6987---46999999999980379-----------99999999975459998799999999998668999999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86249995799999999999828989999999999853089880999999999999918957999999999999896397
Q 005603 442 SDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRE 521 (688)
Q Consensus 442 l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 521 (688)
+...|.+. ..+..+|.++...|++++|+..+++++...| .+..++..+|.++...|++++|+..+++++...|....
T Consensus 337 ~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 337 QSLNPENV-YPYIQLACLLYKQGKFTESEAFFNETKLKFP--TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHCTTCS-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHH
T ss_conf 98599977-9999999999984779999999999987399--98599999999998837889999999999870976244
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 3211011110012235457860699999999999982----------994689999999872098894679999999998
Q 005603 522 LHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKL----------GSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEA 591 (688)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 591 (688)
.+ .....+..+|.++... |++++|+..+++++...|.++.++..+|.++..
T Consensus 414 ~~-------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 474 (537)
T 3fp2_A 414 IH-------------------VGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQ 474 (537)
T ss_dssp CS-------------------STTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HH-------------------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 68-------------------88999998899999976401002247579999999999997499978999999999998
Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 18789999999998803999989999
Q 005603 592 QSQYKEALVSFSISLAIEPDYIPSII 617 (688)
Q Consensus 592 ~g~~~~A~~~~~~al~~~p~~~~~~~ 617 (688)
.|++++|+..|++++++.|+......
T Consensus 475 ~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 475 MEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 51499999999999986899388888
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=275.84 Aligned_cols=456 Identities=14% Similarity=0.081 Sum_probs=341.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 87766787544566655554202548-99999866675210779989830005887742300224554201322335777
Q 005603 41 DWDSKVDDIQVDEAESTLKEALSLNY-EEARALLGRLEYQRGNYDAALQVFQGIDIVSLTPRMTRAVVERTRPLRKHRSK 119 (688)
Q Consensus 41 ~~~~~~~~g~~~~A~~~l~~~l~~~~-~~a~~llg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (688)
.|..++..|++++|...|++++..+| ..++..+|.+++..|+|++|+..|+++. .+.
T Consensus 12 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~-------------------- 69 (514)
T 2gw1_A 12 KGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKAL--ELK-------------------- 69 (514)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HHC--------------------
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCC--------------------
T ss_conf 8789998602789999999998559227899868899998854999999998776--069--------------------
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 88888999998752458999999999866567721785899999999999987319999998887404189999999988
Q 005603 120 GEKADSVPPPGLMSLHSISLLLEAILLKAKSLEELGHCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKALEL 199 (688)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 199 (688)
|. ..++++.+|.++..+|++++|+..|+.++.. .|... . .....+......
T Consensus 70 --------p~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~--~-~~~~~~~~~~~~ 120 (514)
T 2gw1_A 70 --------PD----------YSKVLLRRASANEGLGKFADAMFDLSVLSLN--------GDFND--A-SIEPMLERNLNK 120 (514)
T ss_dssp --------SC----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------SSCCG--G-GTHHHHHHHHHH
T ss_pred --------HH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCC--C-HHHHHHHHHHHH
T ss_conf --------37----------8999998889999876688899999999955--------98751--1-378999999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC---CCCCCCCCCCCCHHHHHHHHH
Q ss_conf 08999970999999999999617999999156799999999999841866889976---445787568983599999999
Q 005603 200 LPHLWIKAGLLEEAIIAYRRALVKPWNLDPKKVASVQRDLAVTLLYGGVEARLPPE---LKVWGPIAPKDNVEEAILLLL 276 (688)
Q Consensus 200 l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~---~~~~~~~~~~~~~eea~~~l~ 276 (688)
...+...+++..++++...+.+.... ..... .. .....|.. ....+.+......
T Consensus 121 -----~~~~~~~~~l~~~~~~~~~~~~~~~~------~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~-------- 177 (514)
T 2gw1_A 121 -----QAMSKLKEKFGDIDTATATPTELSTQ------PAKER---KD-KQENLPSVTSMASFFGIFKPELTF-------- 177 (514)
T ss_dssp -----HHHHHHTTC-------------------------------------CCCCHHHHHHHHTTSCCCCCC--------
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHCCCC------HHHHH---HH-HCCCCCHHHHHHHHHHHCCHHHHH--------
T ss_conf -----99999999999899998766512677------24678---86-344786158999998625878888--------
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHCC-----C--C-------CCCHHHHHHHHHHHHHCC
Q ss_conf 997989864157939999999999993---0999999999997628-----8--8-------787799999999999949
Q 005603 277 ILMEKVASKEMEWDAEIMDHLTYALSV---TGQFELLAEYVEQALP-----G--I-------YNRAERWYILALCYSAAG 339 (688)
Q Consensus 277 ~~~~~~~l~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~l~-----~--~-------p~~~~~~~~la~~~~~~g 339 (688)
..-..|.++..+..++.++.. .|++++|+..+++++. . . |.....+..+|.++...|
T Consensus 178 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (514)
T 2gw1_A 178 ------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKN 251 (514)
T ss_dssp ------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred ------HHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf ------87259958889999899998762332299999999999988665422381001148278999999999999878
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 90999999999699888676210221345999999998888852210123377427899999999999981999989999
Q 005603 340 QNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMY 419 (688)
Q Consensus 340 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 419 (688)
++++|+..+++++ . ..+. ..++..+|.++...+++ ++|+..+++++..+|.+..++.
T Consensus 252 ~~~~A~~~~~~~l------~---~~~~---~~~~~~l~~~~~~~~~~-----------~~A~~~~~~~~~~~~~~~~~~~ 308 (514)
T 2gw1_A 252 DPLGAHEDIKKAI------E---LFPR---VNSYIYMALIMADRNDS-----------TEYYNYFDKALKLDSNNSSVYY 308 (514)
T ss_dssp CHHHHHHHHHHHH------H---HCCC---HHHHHHHHHHHHTSSCC-----------TTGGGHHHHHHTTCTTCTHHHH
T ss_pred CHHHHHHHHHHHH------H---HCCC---HHHHHHHHHHHHHCCCH-----------HHHHHHHHHHHHCCCCCHHHHH
T ss_conf 9999999999998------6---3864---89999999999988889-----------9999999998613867789999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99999998289999999999998624999579999999999982898999999999985308988099999999999991
Q 005603 420 YLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQ 499 (688)
Q Consensus 420 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~ 499 (688)
.+|.++...|++++|+..++++++..|.+. .++..+|.++...|++++|+..+++++...| .+..++..+|.++...
T Consensus 309 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~ 385 (514)
T 2gw1_A 309 HRGQMNFILQNYDQAGKDFDKAKELDPENI-FPYIQLACLAYRENKFDDCETLFSEAKRKFP--EAPEVPNFFAEILTDK 385 (514)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHTCSSCS-HHHHHHHHHTTTTTCHHHHHHHHHHHHHHST--TCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHC
T ss_conf 999999980779999999999987385028-9999999999986899999999999998754--6778999999999878
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHCCC
Q ss_conf 8957999999999999896397321101111001223545786069999999999998---2994689999999872098
Q 005603 500 EQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMK---LGSLPDAEICTEKAKSIEF 576 (688)
Q Consensus 500 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p 576 (688)
|++++|+..+++++...|... .......++..+|.++.. .|++++|+..+++++...|
T Consensus 386 ~~~~~A~~~~~~a~~~~~~~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 446 (514)
T 2gw1_A 386 NDFDKALKQYDLAIELENKLD-------------------GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP 446 (514)
T ss_dssp TCHHHHHHHHHHHHHHHHTSS-------------------SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 899999999999997612332-------------------1789999999999998663325888999999999987585
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 894679999999998187899999999988039999899999999
Q 005603 577 YSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAE 621 (688)
Q Consensus 577 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 621 (688)
.++.++..+|.++...|++++|+..|+++++..|++...+..+..
T Consensus 447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 447 RSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITF 491 (514)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 558999999999998257999999999998766146889999999
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=269.01 Aligned_cols=332 Identities=10% Similarity=0.003 Sum_probs=181.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHH--
Q ss_conf 999999999999309999999999976288878779999999999994990999999999699888676210221345--
Q 005603 291 AEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHF-- 368 (688)
Q Consensus 291 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~-- 368 (688)
+.++..+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..|++++ ...|...
T Consensus 60 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~ 130 (450)
T 2y4t_A 60 YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVL---------KSNPSENEE 130 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------TSCCCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------HCCCCCHHH
T ss_conf 89999999999987997999999999984498748999999999998699999999999997---------249997016
Q ss_pred -----------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf -----------999999998888852210123377427899999999999981999989999999999982899999999
Q 005603 369 -----------LAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDY 437 (688)
Q Consensus 369 -----------~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 437 (688)
....+..+|.++...+++ ++|+..|++++...|.+..++..+|.++...|++++|+..
T Consensus 131 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 199 (450)
T 2y4t_A 131 KEAQSQLIKSDEMQRLRSQALNAFGSGDY-----------TAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISD 199 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCH-----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCH-----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 88999999999999999999999986899-----------9999999999986889769999999999877999999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH------------HHHHHHCCCHHHH
Q ss_conf 9999862499957999999999998289899999999998530898809999999------------9999991895799
Q 005603 438 AIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLK------------AVLQIAQEQPKQA 505 (688)
Q Consensus 438 ~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l------------a~~~~~~g~~~~A 505 (688)
++++++..|.+. .++..+|.++...|++++|+..+++++...| +....+..+ +.++...|++++|
T Consensus 200 ~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 276 (450)
T 2y4t_A 200 LKAASKLKNDNT-EAFYKISTLYYQLGDHELSLSEVRECLKLDQ--DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDA 276 (450)
T ss_dssp HHHHHHHHCSCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 999998688987-9999999999975999999999999987599--8089999999999999999999999871799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 99999999998963973211011110012235457860699999999999982994689999999872098894679999
Q 005603 506 IGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTT 585 (688)
Q Consensus 506 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 585 (688)
+..|++++...|.... .....+..+|.++...|++++|+..+++++...|.++.+|..+
T Consensus 277 ~~~~~~~l~~~p~~~~---------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 335 (450)
T 2y4t_A 277 TSKYESVMKTEPSIAE---------------------YTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHCCSSHH---------------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHCCCCCHH---------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 9999999850873368---------------------9999999999999987889999999999988484548999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH------------HHC-----CCCHHHHHHHHHH-HHHHCCC
Q ss_conf 999998187899999999988039999899999999999------------928-----9973999999999-9982999
Q 005603 586 GMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILM------------KLG-----RQSMPIARSFLMN-ALRLEPT 647 (688)
Q Consensus 586 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~------------~~g-----~~~~~~A~~~~~~-al~~~p~ 647 (688)
|.++...|++++|+..+++++++.|++..++..++.+.. .+| +.+ ++...|++ +++..|+
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~--~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQ--EIIKAYRKLALQWHPD 413 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTT--HHHHHHHHHHHHSCGG
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHH--HHHHHHHHHHHHHCCC
T ss_conf 99998703799999999999885935299999999999986433505699981898668989--9999999999975989
Q ss_pred CH----------HHHHHHHHHHHHCCCHHHH
Q ss_conf 99----------9999999999983999999
Q 005603 648 NH----------DAWMNLGLISKMEGSLQQA 668 (688)
Q Consensus 648 ~~----------~~~~~lg~~~~~~g~~~~A 668 (688)
+. ..+..++.+|..+++.+++
T Consensus 414 ~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 414 NFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp GCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 7999347899999999999999986899999
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=269.00 Aligned_cols=428 Identities=14% Similarity=0.099 Sum_probs=342.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 99999999986656772178589999999999998731999999888740418999999998808999970999999999
Q 005603 137 ISLLLEAILLKAKSLEELGHCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKALELLPHLWIKAGLLEEAIIA 216 (688)
Q Consensus 137 ~~~~~ea~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~ 216 (688)
....+++++.+|..+...|+|++|+..|+.++.. .|. ...++..++.+|...|++++|+..
T Consensus 21 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~-----------~~~~~~~la~~~~~~g~~~~A~~~ 81 (537)
T 3fp2_A 21 RQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--------DPN-----------EPVFYSNISACYISTGDLEKVIEF 81 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH--------CTT-----------CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH--------CCC-----------CCHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 0788999999999999864299999999999863--------899-----------848999999999986899999999
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 99961799999915679999999999984186688997644578756898359999999999798986415793999999
Q 005603 217 YRRALVKPWNLDPKKVASVQRDLAVTLLYGGVEARLPPELKVWGPIAPKDNVEEAILLLLILMEKVASKEMEWDAEIMDH 296 (688)
Q Consensus 217 y~~al~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~eea~~~l~~~~~~~~l~~~p~~~~~~~~ 296 (688)
|++++.. .|.++.++..
T Consensus 82 ~~~al~~---------------------------------------------------------------~p~~~~~~~~ 98 (537)
T 3fp2_A 82 TTKALEI---------------------------------------------------------------KPDHSKALLR 98 (537)
T ss_dssp HHHHHHH---------------------------------------------------------------CTTCHHHHHH
T ss_pred HHHHHHC---------------------------------------------------------------CCCHHHHHHH
T ss_conf 9999860---------------------------------------------------------------9862899999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH---------------------
Q ss_conf 99999930999999999997628887877999999999999499099999999969988---------------------
Q 005603 297 LTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSR--------------------- 355 (688)
Q Consensus 297 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------------------- 355 (688)
+|.++...|++++|+..|+ ++...|+....+. ..+...+...+|+..+++++...
T Consensus 99 la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (537)
T 3fp2_A 99 RASANESLGNFTDAMFDLS-VLSLNGDFDGASI---EPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174 (537)
T ss_dssp HHHHHHHHTCHHHHHHHHH-HHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS
T ss_pred HHHHHHHCCCHHHHHHHHH-HHHCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 9999998389999999999-9864878785889---99998778988999999999747454543450675799999744
Q ss_pred ---HHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHH-------HHHHHHH
Q ss_conf ---8676210--221345999999998888852210123377427899999999999981999989-------9999999
Q 005603 356 ---GVIQSTT--SQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPE-------MMYYLGL 423 (688)
Q Consensus 356 ---~~~~~~~--~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~la~ 423 (688)
..+.... .............++..+...+. ......+.+++|+..|++++..+|.++. ++..+|.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~ 251 (537)
T 3fp2_A 175 DSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDE---GYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGI 251 (537)
T ss_dssp CHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHH---HHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 74999998763256461789999999878876402---068888799999999999998787740445999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 99982899999999999986249995799999999999828989999999999853089880999999999999918957
Q 005603 424 EHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPK 503 (688)
Q Consensus 424 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~ 503 (688)
++...|++++|+..+++++...|. . ..+..+|.++...|++++|+..+++++...| .+..++..+|.++...|+++
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~ 327 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINLHPT-P-NSYIFLALTLADKENSQEFFKFFQKAVDLNP--EYPPTYYHRGQMYFILQDYK 327 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCC-H-HHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCC-C-HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHCCCHH
T ss_conf 987545578999999999866987-4-6999999999980379999999999754599--98799999999998668999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 99999999999989639732110111100122354578606999999999999829946899999998720988946799
Q 005603 504 QAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWH 583 (688)
Q Consensus 504 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 583 (688)
+|+..+++++...|. ...++..+|.++...|++++|+..+++++...|.++.++.
T Consensus 328 ~A~~~~~~a~~~~~~-------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 382 (537)
T 3fp2_A 328 NAKEDFQKAQSLNPE-------------------------NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPT 382 (537)
T ss_dssp HHHHHHHHHHHHCTT-------------------------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred HHHHHHHHHHHHCCC-------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 999999999985999-------------------------7799999999999847799999999999873999859999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCH------HHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHHHCCC
Q ss_conf 999999981878999999999880399998------9999999999992----------899739999999999982999
Q 005603 584 TTGMLFEAQSQYKEALVSFSISLAIEPDYI------PSIISTAEILMKL----------GRQSMPIARSFLMNALRLEPT 647 (688)
Q Consensus 584 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~----------g~~~~~~A~~~~~~al~~~p~ 647 (688)
.+|.++...|++++|+..|+++++..|++. ..+..++.++... |+++ +|+..++++++.+|+
T Consensus 383 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~A~~~~~~a~~~~p~ 460 (537)
T 3fp2_A 383 FFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFN--AAIKLLTKACELDPR 460 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHH--HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH--HHHHHHHHHHHHCCC
T ss_conf 999999883788999999999987097624468889999988999999764010022475799--999999999974999
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9999999999999839999999999999802179999
Q 005603 648 NHDAWMNLGLISKMEGSLQQAADYFQAAYELKLSAPV 684 (688)
Q Consensus 648 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 684 (688)
++.++..+|.++...|++++|+.+|++++++.|+.+.
T Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 497 (537)
T 3fp2_A 461 SEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDE 497 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHH
T ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHH
T ss_conf 7899999999999851499999999999986899388
No 10
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=256.62 Aligned_cols=405 Identities=12% Similarity=-0.027 Sum_probs=283.4
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99986656772178589999999999998731999-99988874041899999999880899997099999999999961
Q 005603 143 AILLKAKSLEELGHCKEAAKECKIILDIVESGLPN-GMPEGFGEDCKLQEMFHKALELLPHLWIKAGLLEEAIIAYRRAL 221 (688)
Q Consensus 143 a~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al 221 (688)
.+...|.++..+|++++|+..++.++++.....+. ..|. ...++..+|.+|...|++++|+..|++++
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~-----------~~~~~~nla~~y~~~g~~~~A~~~~~ka~ 121 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIR-----------SLVTWGNYAWVYYHMGRLSDVQIYVDKVK 121 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTT-----------THHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHH-----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999999999879999999999999998775075413668-----------99999999999998598278999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 79999991567999999999998418668899764457875689835999999999979898641579399999999999
Q 005603 222 VKPWNLDPKKVASVQRDLAVTLLYGGVEARLPPELKVWGPIAPKDNVEEAILLLLILMEKVASKEMEWDAEIMDHLTYAL 301 (688)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~eea~~~l~~~~~~~~l~~~p~~~~~~~~l~~~~ 301 (688)
...+. ......+..+.++..+|.++
T Consensus 122 ~i~~~-------------------------------------------------------~~~~~~~~~~~~~~~~g~~~ 146 (472)
T 4g1t_A 122 HVCEK-------------------------------------------------------FSSPYRIESPELDCEEGWTR 146 (472)
T ss_dssp HHHHH-------------------------------------------------------SCCSSCCCCHHHHHHHHHHH
T ss_pred HHHHH-------------------------------------------------------CCCCCCHHHHHHHHHHHHHH
T ss_conf 98486-------------------------------------------------------05545532499999999999
Q ss_pred HHC--CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 930--99999999999762888787799999999999---9499099999999969988867621022134599999999
Q 005603 302 SVT--GQFELLAEYVEQALPGIYNRAERWYILALCYS---AAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFL 376 (688)
Q Consensus 302 ~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 376 (688)
... +++++|+.+|++++..+|++++.+..++.++. ..++.++|+..+++++ ..+|.. ..++..+
T Consensus 147 ~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al---------~l~p~~--~~~~~~l 215 (472)
T 4g1t_A 147 LKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAI---------RLNPDN--QYLKVLL 215 (472)
T ss_dssp HHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHH---------HHCSSC--HHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------HCCCCC--HHHHHHH
T ss_conf 99723229999999999987298999999999999998647068999999999986---------549841--6999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 88888522101233774278999999999999819999899999999999828999999999999862499957999999
Q 005603 377 GICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLL 456 (688)
Q Consensus 377 g~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~l 456 (688)
|..+...+.. .+.+++|+..+++++..+|..+.++..+|.++...|++++|+..++++++..|++. .++..+
T Consensus 216 ~~~~~~~~~~-------~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l 287 (472)
T 4g1t_A 216 ALKLHKMREE-------GEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNA-YLHCQI 287 (472)
T ss_dssp HHHHHHCC-------------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-HHHHHH
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHH-HHHHHH
T ss_conf 8899998764-------13799999999999884964899999999999874863789999999998698749-999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99999828989999999999853089880999999999999918957999999999999896397321101111001223
Q 005603 457 ALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSE 536 (688)
Q Consensus 457 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 536 (688)
|.++...+....+.. ....+......+.+++|+..+++++...|.
T Consensus 288 g~~y~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------------------ 332 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLR-----------------ENGMYGKRKLLELIGHAVAHLKKADEANDN------------------ 332 (472)
T ss_dssp HHHHHHHHHHHHHC-----------------------CHHHHHHHHHHHHHHHHHHHHHCTT------------------
T ss_pred HHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------------------
T ss_conf 999999988766677-----------------887888888776689999998877614873------------------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH---HHHHHHHH-HHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 54578606999999999999829946899999998720988946---79999999-998187899999999988039999
Q 005603 537 APSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPG---SWHTTGML-FEAQSQYKEALVSFSISLAIEPDY 612 (688)
Q Consensus 537 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~ 612 (688)
...++..+|.++...|++++|+.+|++++...|.... .+..+|.+ ....|++++|+..|.+++++.|+.
T Consensus 333 -------~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~ 405 (472)
T 4g1t_A 333 -------LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKS 405 (472)
T ss_dssp -------TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCC
T ss_pred -------HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
T ss_conf -------1244356899988740299999999999843999768999999999999987879999999999998449436
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 89999999999992899739999999999982999999999999999983999999999999980217999989
Q 005603 613 IPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKLSAPVQS 686 (688)
Q Consensus 613 ~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 686 (688)
......+ . .+...+++++..+|.++.+|..+|.+|...|++++|+++|++|+++.|..|.++
T Consensus 406 ~~~~~~~----------~--~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~ 467 (472)
T 4g1t_A 406 REKEKMK----------D--KLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSAS 467 (472)
T ss_dssp HHHHHHH----------H--HHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------------
T ss_pred HHHHHHH----------H--HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 9999989----------9--999999999975999799999999999986999999999999982698997476
Done!