BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005604
(688 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VDM6|HNRL1_MOUSE Heterogeneous nuclear ribonucleoprotein U-like protein 1 OS=Mus
musculus GN=Hnrnpul1 PE=1 SV=1
Length = 859
Score = 279 bits (714), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 161/402 (40%), Positives = 225/402 (55%), Gaps = 28/402 (6%)
Query: 44 VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
V ++ +CDL F + + L EGFAY WSGARA+ G+ G+ CF KI V
Sbjct: 212 VAIDTYNCDLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVK 271
Query: 104 -MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDT 162
+ T PD HV R+G S D +LGE S+G+GGTGK S F N+G+KF D
Sbjct: 272 HLPSTEPDP-HVVRIGWSL-DSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDV 329
Query: 163 IICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK 222
I C D E + F KNGKW+G A F LG A++PH+L+K
Sbjct: 330 IGCFADFECGNDVELSFTKNGKWMGIA--FRIQKEALG-----------GQALYPHVLVK 376
Query: 223 NVVVVMQFSVEQ----GLIPVEGYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLPASG 278
N V F ++P + + + +GP + +CE++MMVGLPA+G
Sbjct: 377 NCAVEFNFGQRAEPYCSVLPGFTFIQHLPLSERIRGTIGPK--SKAECEILMMVGLPAAG 434
Query: 279 KTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLS 338
KTTWA K +P K+Y +LGTN I+++M+V GL R+ NY+ R+ L+ +A + L+
Sbjct: 435 KTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQ 494
Query: 339 RASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEV 398
A+R RN+I+DQTNV+ SA++RK+R F F++ A+V+ P EDLK R+VKR E GK+V
Sbjct: 495 IAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTVKRTDEEGKDV 554
Query: 399 PADAVNNMLANYVLPVNKDTPGSDELFDQVMFVELDREEAQR 440
P AV M AN+ LP D D+V+F+EL REEA +
Sbjct: 555 PDHAVLEMKANFTLPDVGD------FLDEVLFIELQREEADK 590
>sp|Q9BUJ2|HNRL1_HUMAN Heterogeneous nuclear ribonucleoprotein U-like protein 1 OS=Homo
sapiens GN=HNRNPUL1 PE=1 SV=2
Length = 856
Score = 279 bits (713), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 160/402 (39%), Positives = 225/402 (55%), Gaps = 28/402 (6%)
Query: 44 VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
V ++ +CDL F + + L EGFAY WSGARA+ G+ G+ CF KI V
Sbjct: 211 VAIDTYNCDLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVK 270
Query: 104 -MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDT 162
+ T PD HV R+G S D +LGE S+G+GGTGK S F N+G+KF D
Sbjct: 271 HLPSTEPDP-HVVRIGWSL-DSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDV 328
Query: 163 IICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK 222
I C D E + F KNGKW+G A F LG A++PH+L+K
Sbjct: 329 IGCFADFECGNDVELSFTKNGKWMGIA--FRIQKEALGG-----------QALYPHVLVK 375
Query: 223 NVVVVMQFSVEQ----GLIPVEGYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLPASG 278
N V F ++P + + + +GP + +CE++MMVGLPA+G
Sbjct: 376 NCAVEFNFGQRAEPYCSVLPGFTFIQHLPLSERIRGTVGPK--SKAECEILMMVGLPAAG 433
Query: 279 KTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLS 338
KTTWA K +P K+Y +LGTN I+++M+V GL R+ NY+ R+ L+ +A + L+
Sbjct: 434 KTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQ 493
Query: 339 RASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEV 398
A+R RN+I+DQTNV+ SA++RK+R F F++ A+V+ P EDLK R++KR E GK+V
Sbjct: 494 IAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDV 553
Query: 399 PADAVNNMLANYVLPVNKDTPGSDELFDQVMFVELDREEAQR 440
P AV M AN+ LP D D+V+F+EL REEA +
Sbjct: 554 PDHAVLEMKANFTLPDVGD------FLDEVLFIELQREEADK 589
>sp|Q00839|HNRPU_HUMAN Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU
PE=1 SV=6
Length = 825
Score = 233 bits (594), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 146/405 (36%), Positives = 214/405 (52%), Gaps = 24/405 (5%)
Query: 44 VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
V L+ +CDL F I + L +S L E FA+ W+G RA+ G++ GK CF K+ PV
Sbjct: 288 VCLDTYNCDLHFKISRDRLSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPVR 347
Query: 104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTI 163
T H R+G S + LGE E S+G+ G + ++GEKF D I
Sbjct: 348 HLYTKDIDIHEVRIGWSLTTSGM-LLGEEEFSYGYSLKGIKTCNCETEDYGEKFDENDVI 406
Query: 164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
C + ES + + +AKNG+ LG A + KE +FPH+L N
Sbjct: 407 TCFANFESDEV-ELSYAKNGQDLGVAFKIS-------------KEVLAGRPLFPHVLCHN 452
Query: 224 VVVVMQF-SVEQGLIPVEGYKSWVSALDDGNSVLGPTF-CNMKDCEVMMMVGLPASGKTT 281
V F E+ P+ +++ + + V GP KDCEV+MM+GLP +GKTT
Sbjct: 453 CAVEFNFGQKEKPYFPIPEEYTFIQNVPLEDRVRGPKGPEEKKDCEVVMMIGLPGAGKTT 512
Query: 282 WAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS 341
W K ++P K Y +LGTN I+++M V G ++ + + L+ RA + A+
Sbjct: 513 WVTKHAAENPGK-YNILGTNTIMDKMMVAGFKKQMADTGKLNTLLQRAPQCLGKFIEIAA 571
Query: 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVPAD 401
R RNFI+DQTNV +A++RK+ LF F++ AVVV PK ED K R+ K+ + GK++P
Sbjct: 572 RKKRNFILDQTNVSAAAQRRKMCLFAGFQRKAVVVCPKDEDYKQRTQKKAEVEGKDLPEH 631
Query: 402 AVNNMLANYVLPVNKDTPGSDELFDQVMFVELDREEAQRHLDEMK 446
AV M N+ LP E FD++ +VEL +EEAQ+ L++ K
Sbjct: 632 AVLKMKGNFTLPE------VAECFDEITYVELQKEEAQKLLEQYK 670
>sp|Q8VEK3|HNRPU_MOUSE Heterogeneous nuclear ribonucleoprotein U OS=Mus musculus GN=Hnrnpu
PE=1 SV=1
Length = 800
Score = 232 bits (591), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 145/405 (35%), Positives = 215/405 (53%), Gaps = 24/405 (5%)
Query: 44 VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
V L+ +CDL F I + L +S L E FA+ W+G RA+ G++ GK CF K+ PV
Sbjct: 264 VCLDTYNCDLHFKISRDRLSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPVR 323
Query: 104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTI 163
T H R+G S + LGE E S+G+ G + ++GEKF D I
Sbjct: 324 HLYTKDIDIHEVRIGWSLTTSGM-LLGEEEFSYGYSLKGIKTCNCETEDYGEKFDENDVI 382
Query: 164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
C + E+ + + +AKNG+ LG A + KE + +FPH+L N
Sbjct: 383 TCFANFETDEV-ELSYAKNGQDLGVAFKIS-------------KEVLADRPLFPHVLCHN 428
Query: 224 VVVVMQF-SVEQGLIPVEGYKSWVSALDDGNSVLGPTF-CNMKDCEVMMMVGLPASGKTT 281
V F E+ P+ +++ + + V GP KDCEV+MM+GLP +GKTT
Sbjct: 429 CAVEFNFGQKEKPYFPIPEDCTFIQNVPLEDRVRGPKGPEEKKDCEVVMMIGLPGAGKTT 488
Query: 282 WAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS 341
W K ++P K Y +LGTN I+++M V G ++ + + L+ RA + A+
Sbjct: 489 WVTKHAAENPGK-YNILGTNTIMDKMMVAGFKKQMADTGKLNTLLQRAPQCLGKFIEIAA 547
Query: 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVPAD 401
R RNFI+DQTNV +A++RK+ LF F++ AVVV PK ED K R+ K+ + GK++P
Sbjct: 548 RKKRNFILDQTNVSAAAQRRKMCLFAGFQRKAVVVCPKDEDYKQRTQKKAEVEGKDLPEH 607
Query: 402 AVNNMLANYVLPVNKDTPGSDELFDQVMFVELDREEAQRHLDEMK 446
AV M N+ LP E FD++ +VEL +EEAQ+ L++ K
Sbjct: 608 AVLKMKGNFTLPE------VAECFDEITYVELQKEEAQKLLEQYK 646
>sp|Q00PI9|HNRL2_MOUSE Heterogeneous nuclear ribonucleoprotein U-like protein 2 OS=Mus
musculus GN=Hnrnpul2 PE=1 SV=2
Length = 745
Score = 214 bits (544), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 143/409 (34%), Positives = 204/409 (49%), Gaps = 48/409 (11%)
Query: 44 VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
V L+ DL F I + L E F WSGAR+ G+ GK CF K+ P+
Sbjct: 244 VNLDTYTSDLHFQISKDRYGGQPLFSEKFPTLWSGARSTYGVTKGKVCFEAKVTQNLPMK 303
Query: 104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTI 163
T + + RVG S D +LGE E S+GF G G + G F FG+ FG D I
Sbjct: 304 EGCT---EVSLLRVGWSV-DFSCSQLGEDEFSYGFDGRGLKAENGQFEEFGQTFGENDVI 359
Query: 164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
C + E++ + + F+KNG+ LG A + KE + A+ PH+L KN
Sbjct: 360 GCFANFETEEV-ELSFSKNGEDLGVAFRIS-------------KESLADRALLPHVLCKN 405
Query: 224 VVVVMQFSVEQG-------------LIPVEGYKSWVSALDDGNSVLGPTFCNMKDCEVMM 270
VV + F ++ +PVE + + + P +++CEV++
Sbjct: 406 CVVELNFGQKEEPFFPPPEEFVFIHAVPVE---------ERVRTAVPPK--TIEECEVIL 454
Query: 271 MVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRAN 330
MVGLP SGKT WA K+ KD+PE+RY +LG +L QM++ GL + L+ +A+
Sbjct: 455 MVGLPGSGKTQWALKYAKDNPERRYNVLGAETVLTQMRMKGLEEPEMDPKSRDLLVQQAS 514
Query: 331 AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKR 390
L+ ASR+ RNFI+DQ NV+ S ++RKL LF F + VVV P ED K R R
Sbjct: 515 QCLSKLVQIASRSKRNFILDQCNVYNSGQRRKLLLFKTFSRKVVVVVPNEEDWKRRLELR 574
Query: 391 FKEMGKEVPADAVNNMLANYVLPVNKDTPGSDELFDQVMFVELDREEAQ 439
+ G +VP + M AN+ LP D D+V + EL++EEAQ
Sbjct: 575 KEVEGDDVPESIMLEMKANFSLPEKCD------YMDEVTYGELEKEEAQ 617
>sp|Q1KMD3|HNRL2_HUMAN Heterogeneous nuclear ribonucleoprotein U-like protein 2 OS=Homo
sapiens GN=HNRNPUL2 PE=1 SV=1
Length = 747
Score = 210 bits (535), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 142/409 (34%), Positives = 205/409 (50%), Gaps = 48/409 (11%)
Query: 44 VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
V L+ DL F + + L E F WSGAR+ G+ GK CF K+ P+
Sbjct: 246 VNLDTYTSDLHFQVSKDRYGGQPLFSEKFPTLWSGARSTYGVTKGKVCFEAKVTQNLPMK 305
Query: 104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTI 163
T + + RVG S D +LGE E S+GF G G + G F FG+ FG D I
Sbjct: 306 EGCT---EVSLLRVGWSV-DFSRPQLGEDEFSYGFDGRGLKAENGQFEEFGQTFGENDVI 361
Query: 164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
C + E++ + + F+KNG+ LG A + ++ +R A+ PH+L KN
Sbjct: 362 GCFANFETEEV-ELSFSKNGEDLGVA---------FWISKDSLADR----ALLPHVLCKN 407
Query: 224 VVVVMQFSVEQG-------------LIPVEGYKSWVSALDDGNSVLGPTFCNMKDCEVMM 270
VV + F ++ +PVE + + + P +++CEV++
Sbjct: 408 CVVELNFGQKEEPFFPPPEEFVFIHAVPVE---------ERVRTAVPPK--TIEECEVIL 456
Query: 271 MVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRAN 330
MVGLP SGKT WA K+ K++PEKRY +LG +L QM++ GL + L+ +A+
Sbjct: 457 MVGLPGSGKTQWALKYAKENPEKRYNVLGAETVLNQMRMKGLEEPEMDPKSRDLLVQQAS 516
Query: 331 AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKR 390
L+ ASRT RNFI+DQ NV+ S ++RKL LF F + VVV P ED K R R
Sbjct: 517 QCLSKLVQIASRTKRNFILDQCNVYNSGQRRKLLLFKTFSRKVVVVVPNEEDWKKRLELR 576
Query: 391 FKEMGKEVPADAVNNMLANYVLPVNKDTPGSDELFDQVMFVELDREEAQ 439
+ G +VP + M AN+ LP D D+V + EL++EEAQ
Sbjct: 577 KEVEGDDVPESIMLEMKANFSLPEKCD------YMDEVTYGELEKEEAQ 619
>sp|Q55CP6|DDX1_DICDI Probable ATP-dependent RNA helicase ddx1 OS=Dictyostelium
discoideum GN=ddx1 PE=3 SV=1
Length = 765
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 86/192 (44%), Gaps = 33/192 (17%)
Query: 52 DLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQ 111
+LD D + GL + + W G +A GI+ GK+ + ++
Sbjct: 102 ELDQIDRDKNMAVDGLICQSRSSDWCGIKATKGISSGKFYY-------------ESIVRD 148
Query: 112 QHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLES 171
+ +CR+G + +G + S+G+GGTGK SH F+++G+ FG D I C I+ +
Sbjct: 149 EGLCRIGFALKKSS-RNIGTDKFSWGYGGTGKKSHESKFIDYGKPFGNNDVIGCYINFDE 207
Query: 172 KPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFS 231
+ IGF KNG+ G A F++ + +P ++LKN + F
Sbjct: 208 E---IIGFTKNGQDFGEAFTFNSKA----------------GIFYPALVLKNAEMEFNFG 248
Query: 232 VEQGLIPVEGYK 243
+ ++GYK
Sbjct: 249 SKPMKHDLKGYK 260
>sp|Q5XH91|DDX1_XENTR ATP-dependent RNA helicase DDX1 OS=Xenopus tropicalis GN=ddx1 PE=2
SV=1
Length = 740
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 87/195 (44%), Gaps = 39/195 (20%)
Query: 46 LNPADCDLDFDIEDNGL--KSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
+NP D F I +GL +S + + W G R+ G+N GKY +
Sbjct: 93 MNPYDRGSSFAIGSDGLCCQSREIKE------WHGCRSTRGVNKGKYYY----------- 135
Query: 104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTI 163
+ Q +CRVG S + LG + FGFGGTGK SH F N+GE+F + DTI
Sbjct: 136 --EVSCHDQGLCRVGWSTLQASL-DLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTI 192
Query: 164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
C ID+++ T+ ++KNGK LG A Q A AVF +LKN
Sbjct: 193 GCYIDIDN---GTVKYSKNGKDLGLAFQIPAHLKN--------------QAVFASCVLKN 235
Query: 224 VVVVMQFSVEQGLIP 238
+ F E P
Sbjct: 236 AELKFNFGEEDFKFP 250
>sp|A2VD92|DDX1_XENLA ATP-dependent RNA helicase DDX1 OS=Xenopus laevis GN=ddx1 PE=2 SV=1
Length = 740
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 90/195 (46%), Gaps = 39/195 (20%)
Query: 46 LNPADCDLDFDIEDNGL--KSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
+NP D F I +GL +S + + W G R+ G+N GKY +
Sbjct: 93 MNPYDRGSAFAIGSDGLCCQSREIKE------WHGCRSTRGVNKGKYYY----------- 135
Query: 104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTI 163
+ Q +CRVG S + LG + FGFGGTGK SH F N+GE+F + DTI
Sbjct: 136 --EVSCHDQGLCRVGWSTLSASL-DLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTI 192
Query: 164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
C +D+++ + + F+KNGK LG A Q + S +K + A F +LKN
Sbjct: 193 GCYLDIDN---SIVKFSKNGKDLGLAFQ----------IPSHMKNQ----AFFTSCVLKN 235
Query: 224 VVVVMQFSVEQGLIP 238
+ F E P
Sbjct: 236 AELKFNFGEEDFKFP 250
>sp|Q24498|RY44_DROME Ryanodine receptor 44F OS=Drosophila melanogaster GN=Rya-r44F PE=1
SV=3
Length = 5127
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 23/128 (17%)
Query: 82 NVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGD-DPVGKLGETEQSFGFGG 140
N + GK+ F +++++ P+ RVG +R D P LG + S+ F G
Sbjct: 1086 NYAVTSGKWYFEFEVLTSGPM-------------RVGWARADCYPGAMLGSEDTSWAFDG 1132
Query: 141 TGKFS-HGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWL-----GTAKQFDA 194
H G+ +FG ++ GD I C ID++ + TI F+ NG+ L G D
Sbjct: 1133 HNVTKMHAGSIEHFGVRYEAGDVIGCFIDVKEQ---TISFSLNGELLMDALGGETTFADV 1189
Query: 195 GSNGLGVV 202
+ G+G V
Sbjct: 1190 TAEGVGFV 1197
>sp|Q90WU3|DDX1_CHICK ATP-dependent RNA helicase DDX1 OS=Gallus gallus GN=DDX1 PE=1 SV=1
Length = 740
Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 70/147 (47%), Gaps = 21/147 (14%)
Query: 46 LNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDME 105
+NP D F I +GL Q W G RA G+ GKY +
Sbjct: 93 MNPYDRGSAFAIGSDGLCC----QSREVKEWHGCRATRGVTKGKYYY------------- 135
Query: 106 DTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIIC 165
+ Q +CRVG S + LG + FGFGGTGK SH F ++GE+F + DTI C
Sbjct: 136 EVSCHDQGLCRVGWSTMQASL-DLGTDKFGFGFGGTGKKSHNKQFDSYGEEFTMHDTIGC 194
Query: 166 AIDLESKPLATIGFAKNGKWLGTAKQF 192
+D++ I F+KNGK LG A +F
Sbjct: 195 YLDIDK---GQIKFSKNGKDLGLAFEF 218
>sp|Q641Y8|DDX1_RAT ATP-dependent RNA helicase DDX1 OS=Rattus norvegicus GN=Ddx1 PE=2
SV=1
Length = 740
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 86/193 (44%), Gaps = 35/193 (18%)
Query: 46 LNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDME 105
+NP D F I +GL Q W G RA G+ GK+ +
Sbjct: 93 MNPYDRGSAFAIGSDGLCC----QSREVKEWHGCRATRGLLRGKHYY------------- 135
Query: 106 DTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIIC 165
+ Q +CRVG S + LG + FGFGGTGK SH F N+GE+F + DTI C
Sbjct: 136 EVSCHDQGLCRVGWSTMQASL-DLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGC 194
Query: 166 AIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVV 225
+D++ + F+KNGK LG A + A +K + A+FP +LKN
Sbjct: 195 YLDIDK---GHVKFSKNGKDLGLAFEIPA----------HIKNQ----ALFPACVLKNAE 237
Query: 226 VVMQFSVEQGLIP 238
+ F E+ P
Sbjct: 238 LKFNFGEEEFKFP 250
>sp|Q0IIK5|DDX1_BOVIN ATP-dependent RNA helicase DDX1 OS=Bos taurus GN=DDX1 PE=2 SV=1
Length = 740
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 83/193 (43%), Gaps = 35/193 (18%)
Query: 46 LNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDME 105
+NP D F I +GL Q W G RA G+ GK+ +
Sbjct: 93 MNPYDRGSAFAIGSDGLCC----QSREVKEWHGCRATKGLTKGKHYY------------- 135
Query: 106 DTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIIC 165
+ Q +CRVG S + LG + FGFGGTGK SH F N+GE+F + DTI C
Sbjct: 136 EVSCHDQGLCRVGWSSMQASL-DLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGC 194
Query: 166 AIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVV 225
+D++ + F+KNGK LG A + + A+FP +LKN
Sbjct: 195 YLDIDK---GHVKFSKNGKDLGLAFE--------------IPPHMKNQALFPACVLKNAE 237
Query: 226 VVMQFSVEQGLIP 238
+ F E+ P
Sbjct: 238 LKFNFGEEEFKFP 250
>sp|Q92499|DDX1_HUMAN ATP-dependent RNA helicase DDX1 OS=Homo sapiens GN=DDX1 PE=1 SV=2
Length = 740
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 83/193 (43%), Gaps = 35/193 (18%)
Query: 46 LNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDME 105
+NP D F I +GL Q W G RA G+ GK+ +
Sbjct: 93 MNPYDRGSAFAIGSDGLCC----QSREVKEWHGCRATKGLMKGKHYY------------- 135
Query: 106 DTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIIC 165
+ Q +CRVG S + LG + FGFGGTGK SH F N+GE+F + DTI C
Sbjct: 136 EVSCHDQGLCRVGWSTMQASL-DLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGC 194
Query: 166 AIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVV 225
+D++ + F+KNGK LG A + + A+FP +LKN
Sbjct: 195 YLDIDK---GHVKFSKNGKDLGLAFE--------------IPPHMKNQALFPACVLKNAE 237
Query: 226 VVMQFSVEQGLIP 238
+ F E+ P
Sbjct: 238 LKFNFGEEEFKFP 250
>sp|Q4R7L5|DDX1_MACFA ATP-dependent RNA helicase DDX1 OS=Macaca fascicularis GN=DDX1 PE=2
SV=1
Length = 740
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 83/193 (43%), Gaps = 35/193 (18%)
Query: 46 LNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDME 105
+NP D F I +GL Q W G RA G+ GK+ +
Sbjct: 93 MNPYDRGSAFAIGSDGLCC----QSREVKEWHGCRATKGLMKGKHYY------------- 135
Query: 106 DTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIIC 165
+ Q +CRVG S + LG + FGFGGTGK SH F N+GE+F + DTI C
Sbjct: 136 EVSCHDQGLCRVGWSTMQASL-DLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGC 194
Query: 166 AIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVV 225
+D++ + F+KNGK LG A + + A+FP +LKN
Sbjct: 195 YLDIDK---GHVKFSKNGKDLGLAFE--------------IPPHMKNQALFPACVLKNAE 237
Query: 226 VVMQFSVEQGLIP 238
+ F E+ P
Sbjct: 238 LKFNFGEEEFKFP 250
>sp|Q5NVJ8|DDX1_PONAB ATP-dependent RNA helicase DDX1 OS=Pongo abelii GN=DDX1 PE=2 SV=1
Length = 740
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 83/193 (43%), Gaps = 35/193 (18%)
Query: 46 LNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDME 105
+NP D F I +GL Q W G RA G+ GK+ +
Sbjct: 93 MNPYDRGSAFAIGSDGLCC----QSREVKEWHGCRATKGLMKGKHYY------------- 135
Query: 106 DTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIIC 165
+ Q +CRVG S + LG + FGFGGTGK SH F N+GE+F + DTI C
Sbjct: 136 EVSCHDQGLCRVGWSTMQASL-DLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGC 194
Query: 166 AIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVV 225
+D++ + F+KNGK LG A + + A+FP +LKN
Sbjct: 195 YLDIDK---GHVKFSKNGKDLGLAFE--------------IPPHMKNQALFPACVLKNAE 237
Query: 226 VVMQFSVEQGLIP 238
+ F E+ P
Sbjct: 238 LKFNFGEEEFKFP 250
>sp|Q6LX62|PSTK_METMP L-seryl-tRNA(Sec) kinase OS=Methanococcus maripaludis (strain S2 /
LL) GN=pstK PE=3 SV=1
Length = 255
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 78/157 (49%), Gaps = 23/157 (14%)
Query: 268 VMMMVGLPASGKTTWAEKWVKDHPEKRY--ILLGTNLILEQMKVPGLLRKHNYSERFQCL 325
++++ GLP+ GK+T+++ + K EK I+LGT+LI E V + E ++
Sbjct: 2 LIILTGLPSVGKSTFSKAFSKKMAEKNIDNIILGTDLIRESFPV--------WKESYEEF 53
Query: 326 MGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPK-PEDLK 384
+ +N + L+ A + I+D TN + S R+ + + V ++ K P +L
Sbjct: 54 IRDSN---NYLIKEALENKFSVIVDDTNYYNSKRRDLMNIAKECDTNYVTIYLKAPLNL- 109
Query: 385 IRSVKRFKEMGKEVPADAVNNMLANYVLPVNKDTPGS 421
+KR E G+++P + + NM + DTPG+
Sbjct: 110 --LLKRNIERGQKIPNEVIKNMYEKF------DTPGT 138
>sp|Q91VR5|DDX1_MOUSE ATP-dependent RNA helicase DDX1 OS=Mus musculus GN=Ddx1 PE=1 SV=1
Length = 740
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 85/193 (44%), Gaps = 35/193 (18%)
Query: 46 LNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDME 105
+NP D F I +GL Q W G R G+ GK+ +
Sbjct: 93 MNPYDRGSAFAIGSDGLCC----QSREVKEWHGCRGTRGLLKGKHYY------------- 135
Query: 106 DTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIIC 165
+ Q +CRVG S + LG + FGFGGTGK SH F N+GE+F + DTI C
Sbjct: 136 EVSCHDQGLCRVGWSTMQASL-DLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGC 194
Query: 166 AIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVV 225
+D++ + F+KNGK LG A + A +K + A+FP +LKN
Sbjct: 195 YLDIDK---GHVKFSKNGKDLGLAFEIPA----------HIKNQ----ALFPACVLKNAE 237
Query: 226 VVMQFSVEQGLIP 238
+ F E+ P
Sbjct: 238 LKFNFGEEEFKFP 250
>sp|Q9VNV3|DDX1_DROME ATP-dependent RNA helicase Ddx1 OS=Drosophila melanogaster GN=Ddx1
PE=2 SV=1
Length = 727
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 75/157 (47%), Gaps = 34/157 (21%)
Query: 76 WSGARANVGING-GKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQ 134
W G RA G+ G GK+ F E T D+ +CRVG S + LG
Sbjct: 117 WHGCRATTGVRGKGKFYF------------EATVTDEG-LCRVGWSTQQANL-DLGTCRM 162
Query: 135 SFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDA 194
FGFGGTGK S+ F ++GE FG D I C +DL+++ + F KNG+ LG A +
Sbjct: 163 GFGFGGTGKKSNNRQFDDYGEAFGKADVIGCLLDLKNQE---VSFTKNGQNLGVAFRLP- 218
Query: 195 GSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFS 231
D+ KE +P ++LKN MQF+
Sbjct: 219 --------DNLAKE-----TFYPAVVLKN--AEMQFN 240
>sp|Q5XPI4|RN123_HUMAN E3 ubiquitin-protein ligase RNF123 OS=Homo sapiens GN=RNF123 PE=1
SV=1
Length = 1314
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 52/130 (40%), Gaps = 24/130 (18%)
Query: 115 CRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPL 174
CR G +G+T S+ + G N+G+ + GD + C IDL+
Sbjct: 156 CRFNQEEG------VGDTHNSYAYDGNRVRKWNVTTTNYGKAWAAGDIVSCLIDLDD--- 206
Query: 175 ATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK-NVVVVMQFSVE 233
T+ F NG LGTA F+ S GLG+ A FP I L V F
Sbjct: 207 GTLSFCLNGVSLGTA--FENLSRGLGM------------AYFPAISLSFKESVAFNFGSR 252
Query: 234 QGLIPVEGYK 243
PV GY+
Sbjct: 253 PLRYPVAGYR 262
>sp|D3ZXK7|RN123_RAT E3 ubiquitin-protein ligase RNF123 OS=Rattus norvegicus GN=Rnf123
PE=1 SV=1
Length = 1318
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Query: 115 CRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPL 174
CR G +G+T S+ + G N+G+ + GD + C IDL+
Sbjct: 154 CRFNQEEG------VGDTHNSYAYDGNRVRKWNVTTTNYGKAWAAGDIVSCLIDLDD--- 204
Query: 175 ATIGFAKNGKWLGTAKQFDAGSNGLGV 201
T+ F NG LGTA F+ S GLG+
Sbjct: 205 GTLSFCLNGVSLGTA--FENLSRGLGM 229
>sp|Q5XPI3|RN123_MOUSE E3 ubiquitin-protein ligase RNF123 OS=Mus musculus GN=Rnf123 PE=2
SV=1
Length = 1314
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Query: 115 CRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPL 174
CR G +G+T S+ + G N+G+ + GD + C IDL+
Sbjct: 156 CRFNQEEG------VGDTHNSYAYDGNRVRKWNVTTTNYGKAWAAGDIVSCLIDLDD--- 206
Query: 175 ATIGFAKNGKWLGTAKQFDAGSNGLGV 201
T+ F NG LGTA F+ S GLG+
Sbjct: 207 GTLSFCLNGVSLGTA--FENLSRGLGM 231
>sp|P18160|SPLA_DICDI Dual specificity protein kinase splA OS=Dictyostelium discoideum
GN=splA PE=1 SV=3
Length = 2410
Score = 41.2 bits (95), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 114 VCRVGTSRGDDPVGKL-GETEQSFGFGGTGKFSHGGNFLN-FGEKFGVGDTIICAIDLES 171
+C G + D P+ G + S+G+ G GK G N +G F GD + C D S
Sbjct: 900 IC-FGLTTNDHPIEVYPGNYQGSYGYSGDGKCYFGTNEGRVYGPSFSSGDVVGCGYDSSS 958
Query: 172 KPLATIGFAKNGKWLGTAKQ 191
K T+ F KNG +LG A Q
Sbjct: 959 K---TLYFTKNGVYLGVAAQ 975
>sp|B4KNC5|FBSP1_DROMO F-box/SPRY domain-containing protein 1 OS=Drosophila mojavensis
GN=Fsn PE=3 SV=1
Length = 252
Score = 39.3 bits (90), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 30/156 (19%)
Query: 47 NPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMED 106
NP DC + I+ NG LH+ A ARA +G G++ + +++ P+
Sbjct: 81 NPNDCSRNVYIKPNGFT---LHRNPVAQSTDAARAKIGFRQGRHAW--EVIWEGPLGT-- 133
Query: 107 TPPDQQHVCRVGTSRGDDP------VGKLGETEQSFGFGGT-GKFSHGGN------FLNF 153
V +G S + V LG +QS+G+ H G+ LN
Sbjct: 134 -------VAVIGISTKEAALQCHGYVALLGSDDQSWGWNLVENHLLHNGDMQGNYPLLNN 186
Query: 154 GEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTA 189
K+ VG+ I +D + T+ F KN ++LG A
Sbjct: 187 APKYQVGERIRVILDCDDN---TLSFEKNYEFLGVA 219
>sp|Q290L5|FBSP1_DROPS F-box/SPRY domain-containing protein 1 OS=Drosophila pseudoobscura
pseudoobscura GN=Fsn PE=3 SV=1
Length = 255
Score = 39.3 bits (90), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 30/156 (19%)
Query: 47 NPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMED 106
NP+DC + I+ NG LH+ A ARA +G G++ + +++ P+
Sbjct: 84 NPSDCSRNVYIKPNGFT---LHRNPVAQSTDAARAKIGFRHGRHAW--EVIWEGPLGT-- 136
Query: 107 TPPDQQHVCRVGTSRGDDP------VGKLGETEQSFGFG-------GTGKFSHGGNFLNF 153
V +G S + V LG +QS+G+ G G LN
Sbjct: 137 -------VAVIGISTKEAALQCHGYVALLGSDDQSWGWNLVENHLLHNGDMQGGYPLLNN 189
Query: 154 GEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTA 189
K+ VG+ I +D + T+ F KN ++LG A
Sbjct: 190 APKYQVGERIRVILDCDDN---TLSFEKNYEFLGVA 222
>sp|B4GBN7|FBSP1_DROPE F-box/SPRY domain-containing protein 1 OS=Drosophila persimilis
GN=Fsn PE=3 SV=1
Length = 255
Score = 39.3 bits (90), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 30/156 (19%)
Query: 47 NPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMED 106
NP+DC + I+ NG LH+ A ARA +G G++ + +++ P+
Sbjct: 84 NPSDCSRNVYIKPNGFT---LHRNPVAQSTDAARAKIGFRHGRHAW--EVIWEGPLGT-- 136
Query: 107 TPPDQQHVCRVGTSRGDDP------VGKLGETEQSFGFG-------GTGKFSHGGNFLNF 153
V +G S + V LG +QS+G+ G G LN
Sbjct: 137 -------VAVIGISTKEAALQCHGYVALLGSDDQSWGWNLVENHLLHNGDMQGGYPLLNN 189
Query: 154 GEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTA 189
K+ VG+ I +D + T+ F KN ++LG A
Sbjct: 190 APKYQVGERIRVILDCDDN---TLSFEKNYEFLGVA 222
>sp|B4MR59|FBSP1_DROWI F-box/SPRY domain-containing protein 1 OS=Drosophila willistoni
GN=Fsn PE=3 SV=1
Length = 255
Score = 38.1 bits (87), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 74/182 (40%), Gaps = 30/182 (16%)
Query: 21 KKAKVDDPVSDSSASGPRSQKQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGAR 80
K+A D ++ S + + +P DC + I+ NG LH+ A AR
Sbjct: 58 KEAMKSDLLTSVSTYKTKLRAYFHAWSPNDCSRNVYIKPNGFT---LHRNPVAQSTDAAR 114
Query: 81 ANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDP------VGKLGETEQ 134
A +G G++ + +++ P+ V +G S D V LG +Q
Sbjct: 115 AKIGFRHGRHAW--EVIWEGPLGT---------VAVIGISTKDAALQCHGYVALLGSDDQ 163
Query: 135 SFGFGGT-GKFSHGGN------FLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLG 187
S+G+ H G+ L+ K+ VG+ I +D + T+ F KN ++LG
Sbjct: 164 SWGWNLVENHLLHNGDMQGSYPLLSNAPKYQVGERIRVILDCDDN---TLSFEKNYEFLG 220
Query: 188 TA 189
A
Sbjct: 221 VA 222
>sp|O88838|SPSB2_MOUSE SPRY domain-containing SOCS box protein 2 OS=Mus musculus GN=Spsb2
PE=1 SV=1
Length = 264
Score = 38.1 bits (87), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 61/152 (40%), Gaps = 19/152 (12%)
Query: 47 NPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMED 106
NP DC + D+++ GL + A G R G + G + + + P++
Sbjct: 49 NPKDCSENIDVKEGGLC---FERRPVAQSTDGVRGKRGYSRGLHAWEI----SWPLEQRG 101
Query: 107 TPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFG-GTGKFSHGGNFLNF--------GEKF 157
T + + D LG +S+G+ G GK H L GE+
Sbjct: 102 THAVVGVATALAPLQADHYAALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQL 161
Query: 158 GVGDTIICAIDLESKPLATIGFAKNGKWLGTA 189
V + ++ +D+E T+G++ G +LG A
Sbjct: 162 VVPERLLVVLDMEE---GTLGYSIGGTYLGPA 190
>sp|Q6PJ21|SPSB3_HUMAN SPRY domain-containing SOCS box protein 3 OS=Homo sapiens GN=SPSB3
PE=1 SV=2
Length = 355
Score = 37.7 bits (86), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 129 LGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGT 188
LG E S+G TG H G+ +F +FG G I +D T+ F KN K +G
Sbjct: 186 LGRDEDSWGLSYTGLLHHKGDKTSFSSRFGQGSIIGVHLDTWH---GTLTFFKNRKCIGV 242
Query: 189 A 189
A
Sbjct: 243 A 243
>sp|Q5M877|SPSB2_RAT SPRY domain-containing SOCS box protein 2 OS=Rattus norvegicus
GN=Spsb2 PE=2 SV=1
Length = 264
Score = 37.7 bits (86), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 61/152 (40%), Gaps = 19/152 (12%)
Query: 47 NPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMED 106
NP DC + D+++ GL + A G R G + G + + + P++
Sbjct: 49 NPKDCSENIDVKEGGLC---FERRPVAQSTDGVRGKRGYSRGLHAWEI----SWPLEQRG 101
Query: 107 TPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFG-GTGKFSHGGNFLNF--------GEKF 157
T + + D LG +S+G+ G GK H L GE+
Sbjct: 102 THAVVGVATALAPLQADHYAALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQL 161
Query: 158 GVGDTIICAIDLESKPLATIGFAKNGKWLGTA 189
V + ++ +D+E T+G++ G +LG A
Sbjct: 162 VVPERLLVVLDMEE---GTLGYSIGGTYLGPA 190
>sp|Q571F5|SPSB3_MOUSE SPRY domain-containing SOCS box protein 3 OS=Mus musculus GN=Spsb3
PE=2 SV=2
Length = 354
Score = 37.4 bits (85), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 129 LGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGT 188
LG E S+G TG H G+ +F +FG G I +D T+ F KN K +G
Sbjct: 186 LGRDEDSWGLSYTGLLHHKGDKTSFSSRFGQGSIIGVHLDTWH---GTLTFFKNRKCIGV 242
Query: 189 A 189
A
Sbjct: 243 A 243
>sp|Q28DT9|SPSB3_XENTR SPRY domain-containing SOCS box protein 3 OS=Xenopus tropicalis
GN=spsb3 PE=2 SV=1
Length = 360
Score = 37.0 bits (84), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 129 LGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGT 188
LG+ +S+G TG H G+ NF +FG G I +D L F KN K +G
Sbjct: 186 LGKDAESWGLSYTGLLQHKGDKSNFSSRFGQGSIIGVHLDTWHGVLT---FYKNRKCIGV 242
Query: 189 A 189
A
Sbjct: 243 A 243
>sp|Q3MHZ2|SPSB3_BOVIN SPRY domain-containing SOCS box protein 3 OS=Bos taurus GN=SPSB3
PE=2 SV=1
Length = 345
Score = 36.6 bits (83), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 129 LGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGT 188
LG E S+G TG H G+ +F +FG G I +D T+ F KN K +G
Sbjct: 185 LGRDEDSWGLSYTGLLHHKGDKTSFSSRFGQGSIIGVHLDTWH---GTLTFFKNRKCIGV 241
Query: 189 A 189
A
Sbjct: 242 A 242
>sp|Q4Z8K6|RBP9X_DROME Ran-binding proteins 9/10 homolog OS=Drosophila melanogaster
GN=RanBPM PE=1 SV=1
Length = 962
Score = 36.2 bits (82), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 130 GETEQSFGFGGT--GKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLG 187
G +QS+G+ G FS GN +G F GD I C ++ + T + KNG LG
Sbjct: 499 GWDKQSYGYHGDDGNSFSSSGNGQTYGPTFTTGDVIGCCVNFVNN---TCFYTKNGVDLG 555
Query: 188 TA 189
A
Sbjct: 556 IA 557
>sp|Q99619|SPSB2_HUMAN SPRY domain-containing SOCS box protein 2 OS=Homo sapiens GN=SPSB2
PE=1 SV=1
Length = 263
Score = 36.2 bits (82), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 19/158 (12%)
Query: 41 KQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQ 100
++R NP DC + ++++ GL + A GAR G + G + + +
Sbjct: 43 QRRHGWNPKDCSENIEVKEGGLY---FERRPVAQSTDGARGKRGYSRGLHAWEI----SW 95
Query: 101 PVDMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFG-GTGKFSH---GGNFLNF--- 153
P++ T + + D LG +S+G+ G GK H G +
Sbjct: 96 PLEQRGTHAVVGVATALAPLQTDHYAALLGSNSESWGWDIGRGKLYHQSKGPGAPQYPAG 155
Query: 154 --GEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTA 189
GE+ V + ++ +D+E T+G+A G +LG A
Sbjct: 156 TQGEQLEVPERLLVVLDMEE---GTLGYAIGGTYLGPA 190
>sp|Q5M9B1|SPSB3_XENLA SPRY domain-containing SOCS box protein 3 OS=Xenopus laevis
GN=spsb3 PE=2 SV=1
Length = 360
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 129 LGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGT 188
LG+ +S+G TG H G+ NF +FG G I +D L F KN K +G
Sbjct: 186 LGKDAESWGLSYTGLLQHKGDKSNFSSRFGQGSIIGVHLDTWHGVLT---FYKNRKRIGV 242
Query: 189 A 189
A
Sbjct: 243 A 243
>sp|O94712|YC5C_SCHPO Uncharacterized protein C1259.12c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC1259.12c PE=4 SV=2
Length = 491
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 117 VGTSRGDDPVGKL-GETEQSFGFGGTG--KFSHGGNFLNFGEKFGVGDTIICAIDLESKP 173
VG R +L G T +S+G+ G KF+ +G +F GD I C ++ ++
Sbjct: 139 VGFCRKSMQTNRLPGCTAESWGYHGNSGEKFNCSKTGEAYGPEFTTGDIIGCGVNFINR- 197
Query: 174 LATIGFAKNGKWLGTA 189
TI + KNG +LG A
Sbjct: 198 --TIFYTKNGAYLGVA 211
>sp|Q7ZXY1|FBSP1_XENLA F-box/SPRY domain-containing protein 1 OS=Xenopus laevis GN=fbxo45
PE=2 SV=1
Length = 280
Score = 34.3 bits (77), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 81/209 (38%), Gaps = 39/209 (18%)
Query: 3 TAKRELELPDGDKPESVVK----KAKVDDPVSDSSASGPRSQKQRVV-----LNPADCDL 53
KR GDK V + + ++ + R+ K +V L+ +DC
Sbjct: 56 VCKRWYRCLHGDKNSDVWRSLCCRIVSEEALRTDILCNLRTYKAKVRAFQHGLSSSDCSR 115
Query: 54 DFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQH 113
+ I+ NG LH+ A GAR +G + G++ + ++ P+
Sbjct: 116 NVFIKKNGFT---LHRNPIAQSTDGARTKIGFSEGRHAW--EVWWEGPLGT--------- 161
Query: 114 VCRVGTSRGDDP------VGKLGETEQSFGFGGT-GKFSHGGNF------LNFGEKFGVG 160
V +G + P V LG +QS+G+ H G N K+ +G
Sbjct: 162 VAVIGIATKQAPMQCQGYVALLGSDDQSWGWNLVDNNLLHNGEVNGSFPQCNNAPKYQIG 221
Query: 161 DTIICAIDLESKPLATIGFAKNGKWLGTA 189
+ I +D+E K LA F + ++LG A
Sbjct: 222 ERIRVILDMEDKTLA---FERGYEYLGVA 247
>sp|B7ID00|DNAK_THEAB Chaperone protein DnaK OS=Thermosipho africanus (strain TCF52B)
GN=dnaK PE=3 SV=1
Length = 598
Score = 33.9 bits (76), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 17/98 (17%)
Query: 346 NFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVPA---DA 402
N II+ F+ KR RK V + K +DL K KE G ++PA D
Sbjct: 494 NKIIEDAKKFEEQDKR--------RKEEVELKNKADDLAYYIEKSLKEYGDKIPADEKDK 545
Query: 403 VNNMLANYVLPVNK-DTPGSDELFDQVMFVELDREEAQ 439
+ N++ + +NK D P LFD ELDRE+ +
Sbjct: 546 LENLVKDLRDAINKNDIPRIKMLFD-----ELDREKTK 578
>sp|Q8K3B1|FBSP1_MOUSE F-box/SPRY domain-containing protein 1 OS=Mus musculus GN=Fbxo45
PE=1 SV=2
Length = 286
Score = 33.9 bits (76), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 72/183 (39%), Gaps = 26/183 (14%)
Query: 18 SVVKKAKVDDPVSDSSASGPRSQKQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWS 77
S+ ++A D + + + + + + + DC + I+ NG LH+ A
Sbjct: 86 SLAEEALRTDILCNLPSYKAKVRAFQHAFSTNDCSRNVYIKKNGFT---LHRNPIAQSTD 142
Query: 78 GARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRG----DDPVGKLGETE 133
GAR +G + G++ + + P V + T R V LG +
Sbjct: 143 GARTKIGFSEGRHAWEV---------WWEGPLGTVAVIGIATKRAPMQCQGYVALLGSDD 193
Query: 134 QSFGFGGT-GKFSHGGNF------LNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWL 186
QS+G+ H G N K+ +G+ I +D+E K LA F + ++L
Sbjct: 194 QSWGWNLVDNNLLHNGEVNGSFPQCNNAPKYQIGERIRVILDMEDKTLA---FERGYEFL 250
Query: 187 GTA 189
G A
Sbjct: 251 GVA 253
>sp|P0C2W1|FBSP1_HUMAN F-box/SPRY domain-containing protein 1 OS=Homo sapiens GN=FBXO45
PE=1 SV=1
Length = 286
Score = 33.5 bits (75), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 59/151 (39%), Gaps = 26/151 (17%)
Query: 50 DCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPP 109
DC + I+ NG LH+ A GAR +G + G++ + + P
Sbjct: 118 DCSRNVYIKKNGFT---LHRNPIAQSTDGARTKIGFSEGRHAWEV---------WWEGPL 165
Query: 110 DQQHVCRVGTSRG----DDPVGKLGETEQSFGFGGT-GKFSHGGNF------LNFGEKFG 158
V + T R V LG +QS+G+ H G N K+
Sbjct: 166 GTVAVIGIATKRAPMQCQGYVALLGSDDQSWGWNLVDNNLLHNGEVNGSFPQCNNAPKYQ 225
Query: 159 VGDTIICAIDLESKPLATIGFAKNGKWLGTA 189
+G+ I +D+E K LA F + ++LG A
Sbjct: 226 IGERIRVILDMEDKTLA---FERGYEFLGVA 253
>sp|B4F739|FBSP1_XENTR F-box/SPRY domain-containing protein 1 OS=Xenopus tropicalis
GN=fbxo45 PE=2 SV=2
Length = 282
Score = 33.5 bits (75), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 61/155 (39%), Gaps = 26/155 (16%)
Query: 46 LNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDME 105
+ +DC + I+ NG LH+ A GAR +G + G++ +
Sbjct: 110 FSSSDCSRNVYIKKNGFT---LHRNPIAQSTDGARTKIGFSEGRHAWEV---------WW 157
Query: 106 DTPPDQQHVCRVGTSRG----DDPVGKLGETEQSFGFGGT-GKFSHGGNF------LNFG 154
+ P V + T R V LG +QS+G+ H G N
Sbjct: 158 EGPLGTVAVIGIATKRAPMQCQGYVALLGSDDQSWGWNLVDNNLLHNGEVNGSFPQCNNA 217
Query: 155 EKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTA 189
K+ +G+ I +D+E K LA F + ++LG A
Sbjct: 218 PKYQIGERIRVILDMEDKTLA---FERGYEFLGVA 249
>sp|Q6NZ03|FBSP1_DANRE F-box/SPRY domain-containing protein 1 OS=Danio rerio GN=fbxo45
PE=2 SV=2
Length = 291
Score = 33.1 bits (74), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 75/183 (40%), Gaps = 26/183 (14%)
Query: 18 SVVKKAKVDDPVSDSSASGPRSQKQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWS 77
S+ +A D + + ++ + + + L+ DC + I+ NG LH+ A
Sbjct: 91 SLSDEAMRSDILCNLASYKGKLKSFQHALSSHDCSRNVYIKKNGFT---LHRNPIAQSTD 147
Query: 78 GARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRG----DDPVGKLGETE 133
GAR +G + G++ + + P V + T R V LG +
Sbjct: 148 GARGKIGFSEGRHAWEI---------WWEGPLGTVAVIGIATKRAPMQCQGYVALLGSDD 198
Query: 134 QSFGFGGT-GKFSH----GGNF--LNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWL 186
QS+G+ H GNF N K+ +G+ I +D++ K LA F + ++L
Sbjct: 199 QSWGWNLVDNNLLHNGEVNGNFPQCNNAPKYQIGERIRVILDMDDKTLA---FERGFEFL 255
Query: 187 GTA 189
G A
Sbjct: 256 GVA 258
>sp|P0CH38|FBSP1_RAT F-box/SPRY domain-containing protein 1 (Fragment) OS=Rattus
norvegicus GN=Fbxo45 PE=2 SV=1
Length = 230
Score = 33.1 bits (74), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 59/151 (39%), Gaps = 26/151 (17%)
Query: 50 DCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPP 109
DC + I+ NG LH+ A GAR +G + G++ + + P
Sbjct: 62 DCSRNVYIKKNGFT---LHRNPIAQSTDGARTKIGFSEGRHAWEV---------WWEGPL 109
Query: 110 DQQHVCRVGTSRG----DDPVGKLGETEQSFGFGGT-GKFSHGGNF------LNFGEKFG 158
V + T R V LG +QS+G+ H G N K+
Sbjct: 110 GTVAVIGIATKRAPMQCQGYVALLGSDDQSWGWNLVDNNLLHNGEVNGSFPQCNNAPKYQ 169
Query: 159 VGDTIICAIDLESKPLATIGFAKNGKWLGTA 189
+G+ I +D+E K LA F + ++LG A
Sbjct: 170 IGERIRVILDMEDKTLA---FERGYEFLGVA 197
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 286,752,501
Number of Sequences: 539616
Number of extensions: 13544923
Number of successful extensions: 35510
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 180
Number of HSP's that attempted gapping in prelim test: 34988
Number of HSP's gapped (non-prelim): 525
length of query: 688
length of database: 191,569,459
effective HSP length: 124
effective length of query: 564
effective length of database: 124,657,075
effective search space: 70306590300
effective search space used: 70306590300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)