Query 005604
Match_columns 688
No_of_seqs 380 out of 2154
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 02:02:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005604.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005604hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0349 Putative DEAD-box RNA 100.0 9.8E-34 2.1E-38 300.9 13.4 174 41-249 86-261 (725)
2 KOG2626 Histone H3 (Lys4) meth 99.9 1.5E-27 3.3E-32 260.1 11.5 167 41-239 290-500 (544)
3 PF00622 SPRY: SPRY domain; I 99.8 6.1E-20 1.3E-24 168.1 15.4 116 87-234 1-124 (124)
4 smart00449 SPRY Domain in SPla 99.8 1.2E-19 2.6E-24 166.5 14.6 114 87-232 1-121 (122)
5 KOG2242 Scaffold/matrix specif 99.8 4.3E-21 9.4E-26 217.4 2.1 392 36-449 31-425 (558)
6 PF13671 AAA_33: AAA domain; P 99.8 9.9E-19 2.1E-23 164.0 16.1 139 268-413 1-143 (143)
7 TIGR01663 PNK-3'Pase polynucle 99.8 2.1E-18 4.5E-23 195.1 20.6 149 264-445 367-523 (526)
8 COG4088 Predicted nucleotide k 99.8 3.8E-18 8.2E-23 169.2 12.0 149 267-433 2-155 (261)
9 PF08433 KTI12: Chromatin asso 99.8 1.2E-17 2.5E-22 175.4 15.4 147 267-431 2-152 (270)
10 TIGR03574 selen_PSTK L-seryl-t 99.7 1.2E-16 2.6E-21 165.3 15.5 143 268-431 1-147 (249)
11 COG4639 Predicted kinase [Gene 99.7 2.6E-16 5.6E-21 150.3 13.8 144 266-431 2-148 (168)
12 KOG3953 SOCS box protein SSB-1 99.6 2.4E-15 5.2E-20 150.8 14.5 162 41-235 24-201 (242)
13 PHA02530 pseT polynucleotide k 99.6 7.1E-15 1.5E-19 155.4 15.8 140 266-413 2-143 (300)
14 KOG2243 Ca2+ release channel ( 99.6 1.4E-15 3.1E-20 174.4 10.2 142 82-250 1100-1251(5019)
15 COG0645 Predicted kinase [Gene 99.6 2.2E-14 4.7E-19 139.3 16.5 140 267-415 2-148 (170)
16 KOG4030 Uncharacterized conser 99.6 3.7E-14 7.9E-19 133.8 16.2 158 42-245 27-190 (197)
17 PRK06762 hypothetical protein; 99.6 6.6E-14 1.4E-18 135.5 15.4 134 266-414 2-138 (166)
18 KOG3062 RNA polymerase II elon 99.5 4.5E-14 9.8E-19 141.7 10.5 153 267-433 2-159 (281)
19 TIGR03575 selen_PSTK_euk L-ser 99.5 2.6E-13 5.7E-18 146.5 15.0 88 335-431 118-207 (340)
20 cd02021 GntK Gluconate kinase 99.5 3.2E-13 7E-18 128.4 13.4 135 268-415 1-140 (150)
21 cd00227 CPT Chloramphenicol (C 99.4 3.4E-12 7.4E-17 125.2 15.0 121 266-391 2-132 (175)
22 TIGR01313 therm_gnt_kin carboh 99.4 1.4E-11 3E-16 118.9 16.3 129 269-415 1-136 (163)
23 PF01591 6PF2K: 6-phosphofruct 99.3 2.5E-11 5.4E-16 124.2 15.3 146 265-411 11-169 (222)
24 PF06414 Zeta_toxin: Zeta toxi 99.3 4.9E-12 1.1E-16 126.8 9.6 140 263-408 12-165 (199)
25 KOG3354 Gluconate kinase [Carb 99.3 4.7E-11 1E-15 114.2 15.3 154 265-438 11-178 (191)
26 PRK12339 2-phosphoglycerate ki 99.3 1.1E-10 2.5E-15 117.4 16.0 131 265-401 2-151 (197)
27 TIGR00455 apsK adenylylsulfate 99.2 1.5E-10 3.2E-15 114.3 12.8 114 264-388 16-134 (184)
28 cd02027 APSK Adenosine 5'-phos 99.2 1.1E-10 2.3E-15 112.2 9.8 112 268-389 1-116 (149)
29 TIGR01359 UMP_CMP_kin_fam UMP- 99.1 5.6E-10 1.2E-14 109.5 13.5 133 268-408 1-143 (183)
30 PF01583 APS_kinase: Adenylyls 99.1 2.6E-10 5.6E-15 110.7 10.6 113 265-388 1-118 (156)
31 PRK11545 gntK gluconate kinase 99.1 1.9E-09 4.2E-14 105.1 15.2 149 272-446 1-159 (163)
32 COG3265 GntK Gluconate kinase 99.1 1.7E-09 3.8E-14 103.1 14.1 127 272-415 1-133 (161)
33 KOG2243 Ca2+ release channel ( 99.1 5.3E-11 1.1E-15 137.9 3.2 150 75-249 657-832 (5019)
34 PRK09825 idnK D-gluconate kina 99.1 4.8E-09 1E-13 103.8 16.4 131 266-415 3-141 (176)
35 PRK14527 adenylate kinase; Pro 99.1 1.6E-09 3.5E-14 107.8 13.0 140 264-411 4-154 (191)
36 KOG4367 Predicted Zn-finger pr 99.1 1.6E-09 3.5E-14 116.5 13.4 153 44-232 535-694 (699)
37 PRK14532 adenylate kinase; Pro 99.0 5.7E-09 1.2E-13 103.2 13.8 114 269-391 3-128 (188)
38 PRK14531 adenylate kinase; Pro 99.0 2.4E-09 5.1E-14 106.1 10.9 132 268-410 4-145 (183)
39 PRK00889 adenylylsulfate kinas 99.0 3.2E-09 7E-14 103.9 10.9 112 264-387 2-117 (175)
40 PRK05537 bifunctional sulfate 99.0 9.8E-09 2.1E-13 118.5 16.4 116 264-388 390-510 (568)
41 COG0194 Gmk Guanylate kinase [ 99.0 5.6E-09 1.2E-13 103.4 12.0 146 265-432 3-167 (191)
42 PRK01184 hypothetical protein; 99.0 2.2E-08 4.8E-13 98.7 16.3 118 267-391 2-125 (184)
43 PRK05506 bifunctional sulfate 98.9 9.4E-09 2E-13 120.3 15.5 113 265-387 459-575 (632)
44 COG4185 Uncharacterized protei 98.9 6E-09 1.3E-13 100.5 10.8 132 266-409 2-136 (187)
45 PRK05541 adenylylsulfate kinas 98.9 2.7E-08 5.8E-13 97.5 15.6 114 264-389 5-121 (176)
46 COG0529 CysC Adenylylsulfate k 98.9 1.2E-08 2.5E-13 100.2 12.1 116 263-389 20-140 (197)
47 PLN02200 adenylate kinase fami 98.9 2.4E-08 5.3E-13 103.1 15.1 139 262-410 39-185 (234)
48 PF07931 CPT: Chloramphenicol 98.9 2.5E-08 5.5E-13 98.7 14.1 122 267-391 2-131 (174)
49 TIGR01360 aden_kin_iso1 adenyl 98.9 2.6E-08 5.7E-13 97.6 13.7 115 265-391 2-128 (188)
50 PRK14737 gmk guanylate kinase; 98.9 8.6E-09 1.9E-13 102.9 9.7 158 264-443 2-179 (186)
51 PRK03846 adenylylsulfate kinas 98.8 9.3E-08 2E-12 95.9 15.9 114 264-386 22-138 (198)
52 cd01428 ADK Adenylate kinase ( 98.8 7.1E-08 1.5E-12 95.2 14.9 116 269-391 2-126 (194)
53 PRK12337 2-phosphoglycerate ki 98.8 8.1E-08 1.7E-12 107.3 15.1 125 264-393 253-407 (475)
54 PTZ00322 6-phosphofructo-2-kin 98.8 7.4E-08 1.6E-12 113.5 15.0 145 265-411 214-367 (664)
55 PRK00279 adk adenylate kinase; 98.8 1.1E-07 2.3E-12 96.6 13.6 116 268-391 2-128 (215)
56 TIGR01351 adk adenylate kinase 98.7 1.4E-07 3E-12 95.4 12.2 114 269-391 2-125 (210)
57 PRK00131 aroK shikimate kinase 98.7 3.2E-07 6.9E-12 88.5 13.3 40 265-307 3-42 (175)
58 smart00072 GuKc Guanylate kina 98.7 2.3E-07 4.9E-12 92.0 12.5 147 266-432 2-167 (184)
59 PRK14530 adenylate kinase; Pro 98.6 3.7E-07 8.1E-12 92.6 13.8 117 268-391 5-127 (215)
60 KOG4622 Predicted nucleotide k 98.6 5E-08 1.1E-12 96.7 7.1 140 267-415 2-165 (291)
61 PRK13946 shikimate kinase; Pro 98.6 5.9E-07 1.3E-11 89.1 14.4 131 265-411 9-146 (184)
62 TIGR03263 guanyl_kin guanylate 98.6 4.5E-07 9.8E-12 88.7 13.4 153 267-440 2-172 (180)
63 PRK10078 ribose 1,5-bisphospho 98.6 7E-07 1.5E-11 88.6 14.6 114 266-390 2-131 (186)
64 PRK12338 hypothetical protein; 98.6 4.1E-07 8.8E-12 97.8 13.7 121 265-392 3-152 (319)
65 KOG2134 Polynucleotide kinase 98.6 6.6E-08 1.4E-12 104.2 7.6 134 266-432 269-406 (422)
66 KOG3079 Uridylate kinase/adeny 98.6 5.8E-07 1.3E-11 88.8 12.8 119 264-393 6-136 (195)
67 PRK14738 gmk guanylate kinase; 98.6 2.4E-07 5.1E-12 93.8 10.1 150 261-431 8-176 (206)
68 PRK02496 adk adenylate kinase; 98.6 9.3E-07 2E-11 87.2 13.9 133 268-411 3-146 (184)
69 cd01672 TMPK Thymidine monopho 98.6 2E-06 4.3E-11 84.5 15.8 141 267-411 1-168 (200)
70 PRK08356 hypothetical protein; 98.6 1.3E-06 2.9E-11 87.3 14.6 162 266-445 5-189 (195)
71 PRK00625 shikimate kinase; Pro 98.5 7.3E-07 1.6E-11 88.2 12.1 36 268-306 2-37 (173)
72 cd00464 SK Shikimate kinase (S 98.5 6.7E-07 1.5E-11 84.8 11.0 106 269-391 2-113 (154)
73 TIGR02322 phosphon_PhnN phosph 98.5 1.7E-06 3.7E-11 84.7 13.9 129 267-406 2-143 (179)
74 PLN02772 guanylate kinase 98.5 1.3E-06 2.9E-11 96.1 14.3 166 265-448 134-318 (398)
75 KOG1477 SPRY domain-containing 98.5 2.8E-07 6.2E-12 103.8 9.2 166 41-237 29-208 (469)
76 PF00625 Guanylate_kin: Guanyl 98.5 6E-07 1.3E-11 88.8 10.5 154 266-443 2-177 (183)
77 PF13207 AAA_17: AAA domain; P 98.5 2.6E-07 5.6E-12 84.3 6.6 33 268-303 1-33 (121)
78 PRK04220 2-phosphoglycerate ki 98.5 1.8E-06 3.9E-11 92.2 13.9 124 264-394 90-239 (301)
79 PRK14528 adenylate kinase; Pro 98.5 2.1E-06 4.5E-11 85.6 13.3 136 267-411 2-150 (186)
80 PLN02674 adenylate kinase 98.5 2.2E-06 4.8E-11 89.2 13.9 118 266-391 31-159 (244)
81 PRK13947 shikimate kinase; Pro 98.4 2.3E-06 4.9E-11 83.1 12.7 37 268-307 3-39 (171)
82 PRK00300 gmk guanylate kinase; 98.4 8.3E-07 1.8E-11 88.8 9.9 153 264-437 3-173 (205)
83 PRK13808 adenylate kinase; Pro 98.4 1.5E-06 3.3E-11 94.1 12.3 113 269-391 3-128 (333)
84 COG0563 Adk Adenylate kinase a 98.4 5.1E-06 1.1E-10 82.6 14.2 133 268-411 2-146 (178)
85 PRK07261 topology modulation p 98.4 4E-07 8.6E-12 89.6 6.1 98 268-391 2-100 (171)
86 PF00406 ADK: Adenylate kinase 98.4 3E-06 6.6E-11 81.0 11.8 124 271-410 1-135 (151)
87 PRK03839 putative kinase; Prov 98.4 8.2E-07 1.8E-11 87.3 8.0 99 268-391 2-101 (180)
88 PRK00698 tmk thymidylate kinas 98.4 7E-06 1.5E-10 81.7 14.8 140 266-411 3-170 (205)
89 PRK06217 hypothetical protein; 98.4 3.5E-07 7.6E-12 90.5 5.2 103 267-391 2-105 (183)
90 PF08303 tRNA_lig_kinase: tRNA 98.4 3.5E-06 7.7E-11 82.3 11.7 139 268-432 1-166 (168)
91 PRK04040 adenylate kinase; Pro 98.4 2.2E-06 4.7E-11 85.8 10.5 38 266-304 2-39 (188)
92 TIGR02173 cyt_kin_arch cytidyl 98.4 3.7E-06 8.1E-11 81.1 11.5 107 268-391 2-113 (171)
93 PRK04182 cytidylate kinase; Pr 98.3 4.5E-06 9.8E-11 81.1 11.3 107 268-391 2-113 (180)
94 cd02020 CMPK Cytidine monophos 98.3 1.1E-06 2.3E-11 82.5 6.4 118 268-406 1-120 (147)
95 COG1102 Cmk Cytidylate kinase 98.3 9E-06 1.9E-10 79.2 12.6 104 268-391 2-112 (179)
96 PRK14529 adenylate kinase; Pro 98.3 3.5E-06 7.6E-11 86.6 10.4 115 269-391 3-127 (223)
97 PTZ00088 adenylate kinase 1; P 98.3 4.2E-06 9.2E-11 86.4 11.0 113 268-391 8-131 (229)
98 PRK05057 aroK shikimate kinase 98.3 1.2E-05 2.6E-10 79.1 13.5 108 266-390 4-117 (172)
99 PRK14730 coaE dephospho-CoA ki 98.3 1.3E-05 2.8E-10 80.7 13.8 38 267-307 2-39 (195)
100 TIGR00041 DTMP_kinase thymidyl 98.3 2E-05 4.4E-10 78.1 15.1 123 266-391 3-149 (195)
101 PRK08118 topology modulation p 98.2 2.4E-06 5.2E-11 83.8 7.7 97 268-391 3-100 (167)
102 PRK13948 shikimate kinase; Pro 98.2 6.5E-06 1.4E-10 82.1 10.4 107 264-389 8-122 (182)
103 PRK06547 hypothetical protein; 98.2 3.1E-06 6.7E-11 83.6 7.9 114 264-391 13-139 (172)
104 PRK13973 thymidylate kinase; P 98.2 1.9E-05 4E-10 80.4 13.7 123 266-391 3-150 (213)
105 PRK05480 uridine/cytidine kina 98.2 7.2E-06 1.6E-10 82.6 10.5 39 265-303 5-43 (209)
106 PRK03731 aroL shikimate kinase 98.2 1.7E-05 3.6E-10 77.2 12.5 108 267-391 3-115 (171)
107 PRK00081 coaE dephospho-CoA ki 98.2 3.7E-05 8.1E-10 77.1 15.1 38 266-307 2-39 (194)
108 COG0703 AroK Shikimate kinase 98.2 2.3E-05 4.9E-10 77.4 12.8 106 268-389 4-114 (172)
109 cd01673 dNK Deoxyribonucleosid 98.2 1.1E-05 2.5E-10 79.9 10.8 24 268-291 1-24 (193)
110 PLN02459 probable adenylate ki 98.2 1.2E-05 2.5E-10 84.5 11.3 114 267-391 30-154 (261)
111 TIGR00152 dephospho-CoA kinase 98.2 2.5E-05 5.4E-10 77.6 12.7 153 268-442 1-186 (188)
112 COG2074 2-phosphoglycerate kin 98.1 2.4E-05 5.2E-10 81.0 12.6 127 262-393 85-233 (299)
113 PRK13949 shikimate kinase; Pro 98.1 1.5E-05 3.2E-10 78.4 10.8 36 268-306 3-38 (169)
114 PRK14731 coaE dephospho-CoA ki 98.1 5.1E-05 1.1E-09 77.0 14.5 159 265-445 4-199 (208)
115 PRK14526 adenylate kinase; Pro 98.1 2.4E-05 5.2E-10 79.8 11.5 112 269-391 3-123 (211)
116 cd02030 NDUO42 NADH:Ubiquinone 98.1 0.00011 2.5E-09 74.9 16.5 24 268-291 1-24 (219)
117 TIGR00235 udk uridine kinase. 98.1 2.3E-05 4.9E-10 79.1 10.7 39 264-302 4-42 (207)
118 PRK08233 hypothetical protein; 98.1 2.4E-05 5.3E-10 76.2 10.6 27 266-292 3-29 (182)
119 KOG0635 Adenosine 5'-phosphosu 98.1 1.5E-05 3.3E-10 76.6 8.6 114 264-387 29-146 (207)
120 PLN02422 dephospho-CoA kinase 98.1 7E-05 1.5E-09 77.6 14.1 37 267-307 2-38 (232)
121 PRK08154 anaerobic benzoate ca 98.1 3.6E-05 7.8E-10 82.8 12.4 114 265-391 132-248 (309)
122 PRK06696 uridine kinase; Valid 98.0 1.2E-05 2.6E-10 82.2 8.1 39 265-303 21-61 (223)
123 PTZ00451 dephospho-CoA kinase; 98.0 6.2E-05 1.4E-09 78.5 13.0 38 267-307 2-39 (244)
124 PF13238 AAA_18: AAA domain; P 98.0 7.1E-06 1.5E-10 74.8 5.1 103 269-391 1-113 (129)
125 PRK06761 hypothetical protein; 98.0 4E-05 8.6E-10 81.5 11.0 121 266-391 3-128 (282)
126 PTZ00301 uridine kinase; Provi 98.0 3.6E-05 7.8E-10 78.5 10.2 39 265-303 2-44 (210)
127 PRK14732 coaE dephospho-CoA ki 98.0 4.8E-05 1E-09 76.7 10.7 154 268-444 1-186 (196)
128 PRK05416 glmZ(sRNA)-inactivati 97.9 0.00011 2.3E-09 78.6 13.0 97 265-389 5-105 (288)
129 PRK14734 coaE dephospho-CoA ki 97.9 0.00021 4.5E-09 72.3 14.4 36 267-306 2-37 (200)
130 COG1936 Predicted nucleotide k 97.9 2.5E-05 5.4E-10 76.9 7.3 147 268-448 2-153 (180)
131 COG0572 Udk Uridine kinase [Nu 97.9 0.00011 2.4E-09 75.1 11.7 39 265-303 7-45 (218)
132 PRK13975 thymidylate kinase; P 97.8 0.00041 8.8E-09 68.8 14.9 27 266-292 2-28 (196)
133 PLN02924 thymidylate kinase 97.8 0.00013 2.7E-09 75.1 10.9 121 264-388 14-154 (220)
134 cd02022 DPCK Dephospho-coenzym 97.8 0.00012 2.7E-09 72.3 10.5 36 268-307 1-36 (179)
135 PRK13974 thymidylate kinase; P 97.8 0.00045 9.8E-09 70.2 14.3 122 266-391 3-156 (212)
136 cd02024 NRK1 Nicotinamide ribo 97.7 4.1E-05 9E-10 76.8 5.8 34 268-303 1-34 (187)
137 PRK14733 coaE dephospho-CoA ki 97.7 0.00066 1.4E-08 69.1 14.6 40 265-307 5-44 (204)
138 PRK14021 bifunctional shikimat 97.7 0.00052 1.1E-08 79.5 15.5 111 266-390 6-123 (542)
139 PRK13951 bifunctional shikimat 97.7 0.00016 3.5E-09 82.6 11.1 37 268-307 2-38 (488)
140 KOG0234 Fructose-6-phosphate 2 97.7 0.00026 5.7E-09 78.5 12.0 121 264-389 26-160 (438)
141 cd02023 UMPK Uridine monophosp 97.7 0.00024 5.3E-09 70.9 10.7 37 268-304 1-37 (198)
142 PLN02199 shikimate kinase 97.7 0.00023 5.1E-09 76.0 10.2 106 266-389 102-214 (303)
143 PLN02842 nucleotide kinase 97.6 0.00035 7.6E-09 79.6 12.0 110 270-391 1-122 (505)
144 COG0125 Tmk Thymidylate kinase 97.5 0.0026 5.7E-08 64.9 15.6 123 265-392 2-150 (208)
145 PF01202 SKI: Shikimate kinase 97.5 0.00034 7.3E-09 67.8 8.7 101 275-391 1-106 (158)
146 PRK07667 uridine kinase; Provi 97.5 0.00073 1.6E-08 67.7 10.8 39 265-303 16-56 (193)
147 COG1428 Deoxynucleoside kinase 97.5 0.00085 1.8E-08 68.2 11.0 27 266-292 4-30 (216)
148 PLN02348 phosphoribulokinase 97.5 0.00051 1.1E-08 76.0 10.2 28 264-291 47-74 (395)
149 PLN02165 adenylate isopentenyl 97.5 0.00067 1.4E-08 73.7 10.8 36 265-303 42-77 (334)
150 PRK13976 thymidylate kinase; P 97.5 0.0026 5.6E-08 64.9 14.4 137 267-411 1-163 (209)
151 KOG3347 Predicted nucleotide k 97.5 0.00029 6.4E-09 67.9 6.9 103 268-391 9-114 (176)
152 TIGR00017 cmk cytidylate kinas 97.5 0.0019 4.2E-08 66.2 13.4 35 267-304 3-37 (217)
153 PF01121 CoaE: Dephospho-CoA k 97.4 0.00031 6.8E-09 70.0 7.3 36 268-307 2-37 (180)
154 COG0237 CoaE Dephospho-CoA kin 97.4 0.0018 4E-08 65.7 12.7 36 266-305 2-37 (201)
155 PF02223 Thymidylate_kin: Thym 97.4 0.0026 5.6E-08 62.8 13.5 117 271-392 1-141 (186)
156 cd00071 GMPK Guanosine monopho 97.4 0.00058 1.3E-08 64.8 8.1 24 268-291 1-24 (137)
157 cd02025 PanK Pantothenate kina 97.4 0.00037 8.1E-09 71.5 7.1 36 268-303 1-40 (220)
158 COG3709 Uncharacterized compon 97.4 0.0066 1.4E-07 59.6 15.0 158 265-447 4-182 (192)
159 cd02028 UMPK_like Uridine mono 97.4 0.00034 7.4E-09 69.4 6.4 38 268-305 1-40 (179)
160 PRK03333 coaE dephospho-CoA ki 97.3 0.0029 6.3E-08 70.6 13.5 36 267-306 2-37 (395)
161 PF00485 PRK: Phosphoribulokin 97.3 0.00019 4E-09 71.8 3.5 35 268-302 1-41 (194)
162 PF00004 AAA: ATPase family as 97.3 0.00088 1.9E-08 61.2 7.6 34 269-303 1-34 (132)
163 PRK07933 thymidylate kinase; V 97.2 0.0028 6.1E-08 64.7 11.5 121 267-391 1-154 (213)
164 COG3896 Chloramphenicol 3-O-ph 97.2 0.0042 9.1E-08 60.6 11.5 127 262-390 19-160 (205)
165 PLN02318 phosphoribulokinase/u 97.2 0.0015 3.4E-08 75.5 10.0 37 265-303 64-100 (656)
166 PRK00091 miaA tRNA delta(2)-is 97.2 0.00097 2.1E-08 71.9 7.9 35 265-302 3-37 (307)
167 PF03668 ATP_bind_2: P-loop AT 97.1 0.0072 1.6E-07 64.3 13.9 140 266-444 1-152 (284)
168 COG0541 Ffh Signal recognition 97.1 0.0045 9.8E-08 68.9 12.1 42 263-304 97-140 (451)
169 KOG3078 Adenylate kinase [Nucl 97.1 0.0039 8.4E-08 64.6 10.8 158 265-447 14-188 (235)
170 PRK09087 hypothetical protein; 97.1 0.00088 1.9E-08 69.0 6.1 135 266-411 44-186 (226)
171 PRK00023 cmk cytidylate kinase 97.1 0.0063 1.4E-07 62.7 12.4 35 266-303 4-38 (225)
172 PRK09270 nucleoside triphospha 97.0 0.006 1.3E-07 62.7 11.5 28 264-291 31-58 (229)
173 PRK05800 cobU adenosylcobinami 97.0 0.0018 3.9E-08 63.9 7.2 33 267-300 2-34 (170)
174 PRK05439 pantothenate kinase; 97.0 0.0025 5.5E-08 68.8 8.8 41 263-303 83-127 (311)
175 PRK07429 phosphoribulokinase; 97.0 0.0078 1.7E-07 65.6 12.7 40 264-303 6-45 (327)
176 PRK13477 bifunctional pantoate 97.0 0.0058 1.3E-07 70.2 12.1 39 265-306 283-321 (512)
177 PHA03132 thymidine kinase; Pro 97.0 0.0082 1.8E-07 69.7 13.2 25 266-290 257-281 (580)
178 cd02026 PRK Phosphoribulokinas 96.9 0.0066 1.4E-07 64.4 11.2 36 268-303 1-36 (273)
179 PRK08903 DnaA regulatory inact 96.9 0.0062 1.4E-07 62.1 10.6 142 266-410 42-189 (227)
180 KOG3877 NADH:ubiquinone oxidor 96.9 0.013 2.8E-07 61.8 12.6 27 265-291 70-96 (393)
181 CHL00181 cbbX CbbX; Provisiona 96.9 0.015 3.3E-07 62.1 13.7 25 266-290 59-83 (287)
182 PHA00729 NTP-binding motif con 96.9 0.0082 1.8E-07 62.1 11.1 26 266-291 17-42 (226)
183 cd02019 NK Nucleoside/nucleoti 96.8 0.0012 2.6E-08 55.2 3.7 31 268-298 1-31 (69)
184 PRK15453 phosphoribulokinase; 96.8 0.0096 2.1E-07 63.5 11.1 39 265-303 4-44 (290)
185 TIGR02881 spore_V_K stage V sp 96.7 0.018 3.8E-07 60.4 12.5 25 266-290 42-66 (261)
186 PF00448 SRP54: SRP54-type pro 96.7 0.005 1.1E-07 62.2 7.7 38 266-303 1-40 (196)
187 PRK06893 DNA replication initi 96.6 0.0099 2.1E-07 61.2 9.8 24 267-290 40-63 (229)
188 PRK14086 dnaA chromosomal repl 96.6 0.017 3.6E-07 67.6 12.5 143 268-411 316-479 (617)
189 TIGR03420 DnaA_homol_Hda DnaA 96.6 0.01 2.2E-07 60.0 9.5 39 265-303 37-77 (226)
190 cd03115 SRP The signal recogni 96.6 0.0048 1E-07 60.2 6.8 35 268-302 2-38 (173)
191 KOG0707 Guanylate kinase [Nucl 96.6 0.013 2.8E-07 60.4 10.0 161 266-443 37-216 (231)
192 TIGR02880 cbbX_cfxQ probable R 96.6 0.034 7.3E-07 59.3 13.6 38 267-304 59-102 (284)
193 COG2019 AdkA Archaeal adenylat 96.6 0.034 7.4E-07 55.0 12.2 33 266-300 4-36 (189)
194 PF01745 IPT: Isopentenyl tran 96.5 0.0085 1.9E-07 61.3 8.3 139 266-414 1-164 (233)
195 TIGR01425 SRP54_euk signal rec 96.5 0.0078 1.7E-07 67.7 8.8 41 264-304 98-140 (429)
196 PRK08084 DNA replication initi 96.5 0.016 3.5E-07 59.9 10.6 143 267-411 46-200 (235)
197 cd00009 AAA The AAA+ (ATPases 96.5 0.025 5.5E-07 51.2 10.7 25 266-290 19-43 (151)
198 PRK00149 dnaA chromosomal repl 96.5 0.039 8.4E-07 62.5 14.3 144 267-411 149-313 (450)
199 KOG1477 SPRY domain-containing 96.5 0.0012 2.7E-08 74.8 2.2 76 141-237 7-85 (469)
200 smart00382 AAA ATPases associa 96.5 0.0029 6.2E-08 56.7 4.1 37 266-302 2-40 (148)
201 TIGR03015 pepcterm_ATPase puta 96.5 0.072 1.6E-06 55.3 15.0 26 266-291 43-68 (269)
202 PRK10867 signal recognition pa 96.5 0.0073 1.6E-07 68.1 8.0 40 264-303 98-140 (433)
203 TIGR00959 ffh signal recogniti 96.5 0.011 2.4E-07 66.6 9.4 40 264-303 97-139 (428)
204 PF13401 AAA_22: AAA domain; P 96.5 0.012 2.6E-07 54.0 8.1 27 264-290 2-28 (131)
205 TIGR01618 phage_P_loop phage n 96.5 0.0047 1E-07 63.6 5.9 75 265-351 11-89 (220)
206 PF13521 AAA_28: AAA domain; P 96.4 0.0054 1.2E-07 59.3 5.9 21 269-289 2-22 (163)
207 TIGR00362 DnaA chromosomal rep 96.4 0.027 5.9E-07 62.7 12.2 39 266-304 136-178 (405)
208 PRK00771 signal recognition pa 96.4 0.019 4E-07 65.0 10.7 40 264-303 93-134 (437)
209 KOG0780 Signal recognition par 96.4 0.009 1.9E-07 65.6 7.8 100 262-367 97-206 (483)
210 PLN03025 replication factor C 96.4 0.0082 1.8E-07 64.8 7.6 22 269-290 37-58 (319)
211 PRK14974 cell division protein 96.4 0.0091 2E-07 65.3 7.7 41 264-304 138-180 (336)
212 KOG3220 Similar to bacterial d 96.3 0.058 1.3E-06 54.8 12.6 37 267-307 2-38 (225)
213 PRK08099 bifunctional DNA-bind 96.3 0.011 2.3E-07 66.2 8.0 43 265-307 218-260 (399)
214 cd01130 VirB11-like_ATPase Typ 96.3 0.012 2.7E-07 58.4 7.7 139 265-410 24-166 (186)
215 PRK08727 hypothetical protein; 96.3 0.05 1.1E-06 56.2 12.2 36 267-302 42-79 (233)
216 PRK06620 hypothetical protein; 96.2 0.02 4.3E-07 58.6 9.0 133 267-411 45-180 (214)
217 PRK11860 bifunctional 3-phosph 96.2 0.082 1.8E-06 62.9 15.3 39 266-307 442-480 (661)
218 PF05496 RuvB_N: Holliday junc 96.2 0.014 3.1E-07 60.2 7.6 34 266-300 50-83 (233)
219 PRK05642 DNA replication initi 96.2 0.019 4.1E-07 59.4 8.6 142 267-411 46-199 (234)
220 PRK14962 DNA polymerase III su 96.1 0.068 1.5E-06 61.1 13.6 27 265-291 35-61 (472)
221 COG1660 Predicted P-loop-conta 96.1 0.053 1.1E-06 57.0 11.4 94 267-388 2-101 (286)
222 KOG3308 Uncharacterized protei 96.1 0.013 2.8E-07 59.4 6.7 37 266-304 4-40 (225)
223 cd00544 CobU Adenosylcobinamid 96.1 0.019 4.2E-07 56.7 8.0 32 268-300 1-32 (169)
224 KOG1384 tRNA delta(2)-isopente 96.1 0.042 9E-07 59.4 11.0 118 265-391 6-159 (348)
225 PF13173 AAA_14: AAA domain 96.1 0.031 6.8E-07 52.0 9.0 93 266-378 2-96 (128)
226 TIGR00064 ftsY signal recognit 96.1 0.012 2.6E-07 62.5 6.7 40 263-302 69-110 (272)
227 TIGR02640 gas_vesic_GvpN gas v 96.1 0.019 4.2E-07 60.3 8.2 33 266-299 21-53 (262)
228 PRK14088 dnaA chromosomal repl 96.0 0.097 2.1E-06 59.3 14.1 38 268-305 132-173 (440)
229 cd03228 ABCC_MRP_Like The MRP 95.9 0.14 3E-06 50.0 12.8 117 265-383 27-158 (171)
230 PRK10416 signal recognition pa 95.9 0.033 7.1E-07 60.5 9.0 40 264-303 112-153 (318)
231 COG5324 Uncharacterized conser 95.8 0.079 1.7E-06 59.6 11.8 161 263-449 371-549 (758)
232 COG2256 MGS1 ATPase related to 95.8 0.038 8.2E-07 61.2 9.3 35 265-300 47-81 (436)
233 PRK14956 DNA polymerase III su 95.8 0.095 2.1E-06 59.9 12.5 28 264-291 38-65 (484)
234 COG2884 FtsE Predicted ATPase 95.8 0.12 2.6E-06 52.4 11.7 55 337-391 148-207 (223)
235 PF13245 AAA_19: Part of AAA d 95.8 0.013 2.9E-07 50.3 4.4 23 266-288 10-32 (76)
236 PRK11889 flhF flagellar biosyn 95.8 0.098 2.1E-06 58.5 12.2 39 265-303 240-280 (436)
237 PRK07764 DNA polymerase III su 95.7 0.087 1.9E-06 64.0 12.5 28 264-291 35-62 (824)
238 COG0552 FtsY Signal recognitio 95.7 0.058 1.3E-06 58.6 9.8 43 263-305 136-180 (340)
239 cd03246 ABCC_Protease_Secretio 95.6 0.079 1.7E-06 51.8 10.0 116 265-382 27-158 (173)
240 PRK12402 replication factor C 95.6 0.058 1.3E-06 57.8 9.8 24 268-291 38-61 (337)
241 KOG0738 AAA+-type ATPase [Post 95.6 0.08 1.7E-06 58.5 10.7 37 266-303 245-281 (491)
242 PRK13695 putative NTPase; Prov 95.6 0.085 1.8E-06 51.6 10.1 23 268-290 2-24 (174)
243 PRK07003 DNA polymerase III su 95.6 0.085 1.8E-06 63.1 11.7 28 264-291 36-63 (830)
244 TIGR00554 panK_bact pantothena 95.6 0.012 2.5E-07 63.2 4.3 40 263-302 59-102 (290)
245 COG0283 Cmk Cytidylate kinase 95.6 0.27 5.9E-06 50.5 13.9 34 267-303 5-38 (222)
246 PRK12422 chromosomal replicati 95.6 0.11 2.4E-06 58.9 12.3 144 267-411 142-304 (445)
247 COG1072 CoaA Panthothenate kin 95.6 0.033 7.2E-07 58.9 7.4 127 262-393 78-234 (283)
248 PF00308 Bac_DnaA: Bacterial d 95.6 0.06 1.3E-06 55.3 9.2 142 267-411 35-199 (219)
249 cd03230 ABC_DR_subfamily_A Thi 95.5 0.14 3E-06 50.1 11.3 112 265-378 25-152 (173)
250 PRK04195 replication factor C 95.5 0.041 9E-07 62.9 8.5 33 266-299 39-71 (482)
251 PRK08116 hypothetical protein; 95.5 0.1 2.2E-06 55.3 10.7 42 266-307 114-157 (268)
252 COG3839 MalK ABC-type sugar tr 95.5 0.085 1.8E-06 57.7 10.3 37 264-300 27-64 (338)
253 PRK13342 recombination factor 95.5 0.18 3.9E-06 56.5 13.2 33 266-299 36-68 (413)
254 PF13189 Cytidylate_kin2: Cyti 95.4 0.16 3.4E-06 50.4 11.4 35 268-305 1-35 (179)
255 TIGR00635 ruvB Holliday juncti 95.4 0.15 3.1E-06 54.3 11.9 27 266-292 30-56 (305)
256 PRK09183 transposase/IS protei 95.4 0.14 3E-06 54.0 11.4 124 265-410 101-232 (259)
257 TIGR00174 miaA tRNA isopenteny 95.4 0.01 2.3E-07 63.4 3.1 32 268-302 1-32 (287)
258 PRK12377 putative replication 95.4 0.11 2.4E-06 54.5 10.5 105 266-387 101-214 (248)
259 PLN02840 tRNA dimethylallyltra 95.4 0.016 3.4E-07 65.1 4.4 36 264-302 19-54 (421)
260 PRK00080 ruvB Holliday junctio 95.3 0.11 2.4E-06 56.3 10.7 27 266-292 51-77 (328)
261 PF07728 AAA_5: AAA domain (dy 95.3 0.016 3.4E-07 54.3 3.7 29 269-298 2-30 (139)
262 cd03238 ABC_UvrA The excision 95.3 0.15 3.2E-06 50.7 10.7 24 265-288 20-43 (176)
263 cd03222 ABC_RNaseL_inhibitor T 95.3 0.082 1.8E-06 52.6 8.8 110 265-390 24-141 (177)
264 TIGR02639 ClpA ATP-dependent C 95.3 0.17 3.7E-06 60.9 13.2 24 267-290 204-227 (731)
265 cd01122 GP4d_helicase GP4d_hel 95.3 0.2 4.2E-06 52.4 12.0 36 265-300 29-67 (271)
266 KOG1533 Predicted GTPase [Gene 95.3 0.15 3.3E-06 53.0 10.7 32 269-301 5-39 (290)
267 KOG4238 Bifunctional ATP sulfu 95.2 0.053 1.2E-06 58.9 7.6 115 265-389 49-169 (627)
268 smart00763 AAA_PrkA PrkA AAA d 95.2 0.014 2.9E-07 64.3 3.2 27 265-291 77-103 (361)
269 cd03232 ABC_PDR_domain2 The pl 95.2 0.23 5E-06 49.4 11.7 25 265-289 32-56 (192)
270 cd01120 RecA-like_NTPases RecA 95.2 0.1 2.2E-06 48.8 8.6 34 268-301 1-36 (165)
271 PHA02544 44 clamp loader, smal 95.1 0.17 3.7E-06 54.1 11.3 27 265-291 42-68 (316)
272 PRK12724 flagellar biosynthesi 95.1 0.11 2.3E-06 58.6 9.9 40 265-304 222-264 (432)
273 PRK13900 type IV secretion sys 95.1 0.087 1.9E-06 57.6 9.1 137 265-407 159-299 (332)
274 PRK14961 DNA polymerase III su 95.1 0.11 2.3E-06 57.4 9.9 28 264-291 36-63 (363)
275 cd03269 ABC_putative_ATPase Th 95.1 0.28 6.1E-06 49.3 12.1 27 265-291 25-51 (210)
276 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.1 0.34 7.4E-06 46.2 12.1 102 265-383 25-130 (144)
277 TIGR01526 nadR_NMN_Atrans nico 95.0 0.079 1.7E-06 57.7 8.5 26 266-291 162-187 (325)
278 PRK14722 flhF flagellar biosyn 95.0 0.18 3.9E-06 56.0 11.4 40 264-303 135-178 (374)
279 cd03247 ABCC_cytochrome_bd The 95.0 0.27 5.9E-06 48.2 11.6 118 265-383 27-160 (178)
280 cd03229 ABC_Class3 This class 95.0 0.2 4.3E-06 49.3 10.6 118 265-383 25-164 (178)
281 cd03216 ABC_Carb_Monos_I This 95.0 0.24 5.3E-06 48.1 11.1 109 265-383 25-145 (163)
282 KOG1532 GTPase XAB1, interacts 95.0 0.073 1.6E-06 56.4 7.6 39 263-301 16-56 (366)
283 PRK14964 DNA polymerase III su 95.0 0.18 3.9E-06 58.0 11.5 27 264-290 33-59 (491)
284 KOG0744 AAA+-type ATPase [Post 95.0 0.086 1.9E-06 57.1 8.2 26 266-291 177-202 (423)
285 cd01131 PilT Pilus retraction 94.9 0.17 3.8E-06 50.9 10.1 24 268-291 3-26 (198)
286 PRK12323 DNA polymerase III su 94.9 0.19 4E-06 59.4 11.6 29 263-291 35-63 (700)
287 TIGR02868 CydC thiol reductant 94.9 0.27 5.8E-06 56.6 13.0 35 265-299 360-395 (529)
288 PRK14963 DNA polymerase III su 94.9 0.17 3.8E-06 58.3 11.3 28 264-291 34-61 (504)
289 PRK06645 DNA polymerase III su 94.9 0.16 3.4E-06 58.7 10.9 28 264-291 41-68 (507)
290 cd03214 ABC_Iron-Siderophores_ 94.9 0.14 3.1E-06 50.3 9.3 109 265-377 24-154 (180)
291 KOG0730 AAA+-type ATPase [Post 94.9 0.11 2.3E-06 60.8 9.3 36 264-300 466-501 (693)
292 PF01695 IstB_IS21: IstB-like 94.9 0.079 1.7E-06 52.7 7.3 121 265-409 46-174 (178)
293 PLN02748 tRNA dimethylallyltra 94.9 0.027 5.8E-07 64.1 4.4 36 264-302 20-55 (468)
294 KOG1969 DNA replication checkp 94.8 0.25 5.5E-06 58.4 12.1 36 264-300 324-359 (877)
295 PRK08181 transposase; Validate 94.8 0.14 3E-06 54.4 9.3 120 266-409 106-233 (269)
296 TIGR00150 HI0065_YjeE ATPase, 94.8 0.027 5.8E-07 53.7 3.4 27 265-291 21-47 (133)
297 PRK03992 proteasome-activating 94.7 0.074 1.6E-06 59.2 7.5 38 265-303 164-201 (389)
298 PRK14957 DNA polymerase III su 94.7 0.29 6.4E-06 56.9 12.5 28 264-291 36-63 (546)
299 KOG0991 Replication factor C, 94.7 0.13 2.9E-06 53.5 8.6 153 268-449 50-219 (333)
300 KOG0741 AAA+-type ATPase [Post 94.7 0.086 1.9E-06 60.1 7.8 118 254-411 241-362 (744)
301 cd00984 DnaB_C DnaB helicase C 94.7 0.15 3.2E-06 52.3 9.1 37 265-301 12-51 (242)
302 PRK14949 DNA polymerase III su 94.7 0.21 4.7E-06 60.7 11.6 28 264-291 36-63 (944)
303 PF05729 NACHT: NACHT domain 94.7 0.021 4.5E-07 54.0 2.6 25 267-291 1-25 (166)
304 PRK11174 cysteine/glutathione 94.6 0.15 3.2E-06 59.5 9.9 109 265-377 375-509 (588)
305 cd03215 ABC_Carb_Monos_II This 94.5 0.27 5.9E-06 48.4 10.3 113 265-377 25-160 (182)
306 PRK06305 DNA polymerase III su 94.5 0.22 4.8E-06 56.7 10.8 28 264-291 37-64 (451)
307 COG1222 RPT1 ATP-dependent 26S 94.5 0.2 4.4E-06 54.9 9.9 95 264-377 183-296 (406)
308 PRK08691 DNA polymerase III su 94.5 0.28 6.2E-06 58.3 11.8 29 263-291 35-63 (709)
309 cd01129 PulE-GspE PulE/GspE Th 94.5 0.13 2.8E-06 54.4 8.3 113 266-389 80-195 (264)
310 PF04665 Pox_A32: Poxvirus A32 94.5 0.39 8.5E-06 50.3 11.6 27 265-291 12-38 (241)
311 PRK10751 molybdopterin-guanine 94.5 0.031 6.8E-07 55.6 3.4 28 265-292 5-32 (173)
312 TIGR03878 thermo_KaiC_2 KaiC d 94.5 0.36 7.8E-06 50.8 11.5 37 265-301 35-73 (259)
313 PTZ00454 26S protease regulato 94.5 0.12 2.6E-06 57.9 8.3 34 265-299 178-211 (398)
314 PRK09111 DNA polymerase III su 94.4 0.22 4.7E-06 58.7 10.7 29 263-291 43-71 (598)
315 COG3911 Predicted ATPase [Gene 94.4 0.12 2.6E-06 50.4 6.9 43 265-308 8-50 (183)
316 TIGR01243 CDC48 AAA family ATP 94.4 0.15 3.3E-06 61.3 9.6 37 265-302 211-247 (733)
317 TIGR02397 dnaX_nterm DNA polym 94.4 0.35 7.5E-06 52.4 11.6 28 264-291 34-61 (355)
318 TIGR03877 thermo_KaiC_1 KaiC d 94.4 0.23 4.9E-06 51.4 9.6 37 265-301 20-58 (237)
319 cd03264 ABC_drug_resistance_li 94.4 0.37 8.1E-06 48.4 11.0 24 268-291 27-50 (211)
320 COG1126 GlnQ ABC-type polar am 94.4 0.029 6.3E-07 57.6 2.9 25 264-288 26-50 (240)
321 TIGR01242 26Sp45 26S proteasom 94.4 0.14 3E-06 56.3 8.5 33 266-299 156-188 (364)
322 TIGR01241 FtsH_fam ATP-depende 94.4 0.087 1.9E-06 60.4 7.1 37 266-303 88-124 (495)
323 PRK06526 transposase; Provisio 94.3 0.16 3.4E-06 53.5 8.4 24 266-289 98-121 (254)
324 PF00437 T2SE: Type II/IV secr 94.3 0.13 2.8E-06 53.9 7.8 126 265-407 126-257 (270)
325 PRK13894 conjugal transfer ATP 94.3 0.15 3.2E-06 55.5 8.4 114 266-391 148-267 (319)
326 COG4619 ABC-type uncharacteriz 94.3 0.21 4.6E-06 49.8 8.5 25 265-289 28-52 (223)
327 TIGR03499 FlhF flagellar biosy 94.3 0.04 8.7E-07 58.7 3.9 39 264-302 192-234 (282)
328 PRK13833 conjugal transfer pro 94.3 0.26 5.6E-06 53.7 10.2 113 266-391 144-263 (323)
329 cd02029 PRK_like Phosphoribulo 94.3 0.032 6.9E-07 59.2 3.1 37 268-304 1-39 (277)
330 PHA02244 ATPase-like protein 94.2 0.19 4.2E-06 55.7 9.1 78 268-361 121-199 (383)
331 PRK06067 flagellar accessory p 94.2 0.4 8.7E-06 49.2 10.9 37 265-301 24-62 (234)
332 PRK14952 DNA polymerase III su 94.2 0.51 1.1E-05 55.5 12.9 28 264-291 33-60 (584)
333 PF03029 ATP_bind_1: Conserved 94.2 0.033 7.1E-07 58.0 2.9 31 271-301 1-33 (238)
334 PLN00020 ribulose bisphosphate 94.2 0.16 3.4E-06 56.4 8.2 42 262-304 144-185 (413)
335 KOG0739 AAA+-type ATPase [Post 94.2 0.14 3.1E-06 54.9 7.5 41 266-307 166-207 (439)
336 PRK14954 DNA polymerase III su 94.2 0.21 4.6E-06 58.9 9.8 28 264-291 36-63 (620)
337 PRK14955 DNA polymerase III su 94.1 0.24 5.1E-06 55.4 9.8 28 264-291 36-63 (397)
338 PRK07952 DNA replication prote 94.1 0.4 8.7E-06 50.2 10.9 41 267-307 100-142 (244)
339 TIGR00678 holB DNA polymerase 94.1 0.62 1.3E-05 46.1 11.7 28 264-291 12-39 (188)
340 PRK14723 flhF flagellar biosyn 94.1 0.22 4.8E-06 59.8 9.9 40 265-304 184-227 (767)
341 PLN02796 D-glycerate 3-kinase 94.0 0.05 1.1E-06 59.6 4.1 39 264-302 98-138 (347)
342 cd00820 PEPCK_HprK Phosphoenol 94.0 0.066 1.4E-06 49.2 4.2 23 265-287 14-36 (107)
343 COG1618 Predicted nucleotide k 94.0 0.035 7.5E-07 54.6 2.4 28 266-293 5-32 (179)
344 cd03223 ABCD_peroxisomal_ALDP 93.9 0.78 1.7E-05 44.7 11.9 108 265-377 26-144 (166)
345 TIGR02639 ClpA ATP-dependent C 93.9 0.55 1.2E-05 56.6 13.0 34 268-302 486-519 (731)
346 TIGR03345 VI_ClpV1 type VI sec 93.9 0.53 1.1E-05 57.8 12.9 161 268-446 598-780 (852)
347 PF02492 cobW: CobW/HypB/UreG, 93.9 0.069 1.5E-06 52.8 4.5 31 268-298 2-33 (178)
348 PRK14969 DNA polymerase III su 93.9 0.64 1.4E-05 54.0 13.0 28 264-291 36-63 (527)
349 PRK06921 hypothetical protein; 93.9 0.65 1.4E-05 49.2 12.0 40 266-305 117-159 (266)
350 PRK14959 DNA polymerase III su 93.9 0.39 8.4E-06 56.7 11.1 27 265-291 37-63 (624)
351 PTZ00361 26 proteosome regulat 93.9 0.17 3.7E-06 57.3 8.0 33 265-298 216-248 (438)
352 TIGR02788 VirB11 P-type DNA tr 93.8 0.28 6.1E-06 52.9 9.3 135 265-407 143-284 (308)
353 KOG0734 AAA+-type ATPase conta 93.8 0.26 5.7E-06 56.5 9.1 29 263-291 334-362 (752)
354 PF02367 UPF0079: Uncharacteri 93.8 0.064 1.4E-06 50.5 3.8 29 264-292 13-41 (123)
355 PRK14729 miaA tRNA delta(2)-is 93.8 0.064 1.4E-06 57.8 4.2 34 265-302 3-36 (300)
356 COG1223 Predicted ATPase (AAA+ 93.8 0.96 2.1E-05 48.0 12.6 38 265-303 150-187 (368)
357 PRK11034 clpA ATP-dependent Cl 93.8 0.71 1.5E-05 55.9 13.4 23 267-289 208-230 (758)
358 CHL00195 ycf46 Ycf46; Provisio 93.7 0.12 2.6E-06 59.3 6.7 36 265-301 258-293 (489)
359 CHL00095 clpC Clp protease ATP 93.7 0.42 9E-06 58.4 11.6 25 266-290 200-224 (821)
360 COG0467 RAD55 RecA-superfamily 93.7 0.099 2.1E-06 54.6 5.5 39 264-302 21-61 (260)
361 PF13479 AAA_24: AAA domain 93.7 0.12 2.7E-06 52.5 6.0 31 265-301 2-32 (213)
362 PHA02575 1 deoxynucleoside mon 93.7 0.081 1.8E-06 54.7 4.6 39 268-308 2-40 (227)
363 TIGR03375 type_I_sec_LssB type 93.7 0.78 1.7E-05 54.8 13.6 35 265-299 490-525 (694)
364 PRK14970 DNA polymerase III su 93.7 0.56 1.2E-05 51.5 11.5 27 265-291 38-64 (367)
365 PRK12726 flagellar biosynthesi 93.7 0.33 7.2E-06 54.1 9.6 40 264-303 204-245 (407)
366 COG0466 Lon ATP-dependent Lon 93.6 0.074 1.6E-06 62.6 4.7 48 264-312 348-395 (782)
367 PRK10865 protein disaggregatio 93.6 0.6 1.3E-05 57.4 12.7 36 267-302 599-636 (857)
368 PRK12727 flagellar biosynthesi 93.6 0.3 6.6E-06 56.5 9.5 39 264-302 348-390 (559)
369 PF13191 AAA_16: AAA ATPase do 93.6 0.052 1.1E-06 52.5 2.9 28 264-291 22-49 (185)
370 PLN03046 D-glycerate 3-kinase; 93.6 0.076 1.6E-06 59.7 4.5 39 264-302 210-250 (460)
371 cd03213 ABCG_EPDR ABCG transpo 93.6 0.74 1.6E-05 46.0 11.3 112 265-377 34-167 (194)
372 COG5192 BMS1 GTP-binding prote 93.5 0.13 2.7E-06 58.9 6.1 28 264-291 67-94 (1077)
373 PRK14951 DNA polymerase III su 93.5 0.45 9.8E-06 56.2 11.0 28 264-291 36-63 (618)
374 PRK14950 DNA polymerase III su 93.5 0.35 7.6E-06 56.8 10.1 28 264-291 36-63 (585)
375 PRK04328 hypothetical protein; 93.5 0.42 9.2E-06 49.9 9.7 37 265-301 22-60 (249)
376 KOG0733 Nuclear AAA ATPase (VC 93.5 0.21 4.6E-06 57.9 7.9 32 266-298 545-576 (802)
377 TIGR03881 KaiC_arch_4 KaiC dom 93.5 0.46 9.9E-06 48.4 9.8 37 265-301 19-57 (229)
378 TIGR01243 CDC48 AAA family ATP 93.5 0.15 3.3E-06 61.3 7.2 38 265-303 486-523 (733)
379 TIGR03880 KaiC_arch_3 KaiC dom 93.4 0.8 1.7E-05 46.6 11.4 37 265-301 15-53 (224)
380 PRK13341 recombination factor 93.4 0.38 8.2E-06 57.9 10.2 24 268-291 54-77 (725)
381 PTZ00202 tuzin; Provisional 93.3 0.5 1.1E-05 53.6 10.3 27 265-291 285-311 (550)
382 cd00267 ABC_ATPase ABC (ATP-bi 93.3 0.73 1.6E-05 44.1 10.4 103 265-377 24-136 (157)
383 PRK00440 rfc replication facto 93.3 0.27 5.8E-06 52.2 8.1 24 268-291 40-63 (319)
384 COG0324 MiaA tRNA delta(2)-iso 93.3 0.076 1.6E-06 57.4 3.8 36 265-303 2-37 (308)
385 PRK09435 membrane ATPase/prote 93.3 0.078 1.7E-06 58.0 4.0 38 264-301 54-93 (332)
386 TIGR01420 pilT_fam pilus retra 93.2 0.64 1.4E-05 50.9 11.0 26 266-291 122-147 (343)
387 TIGR02525 plasmid_TraJ plasmid 93.2 0.56 1.2E-05 52.2 10.6 117 267-390 150-272 (372)
388 PRK10865 protein disaggregatio 93.2 0.58 1.3E-05 57.5 11.7 26 265-290 198-223 (857)
389 cd01918 HprK_C HprK/P, the bif 93.2 0.075 1.6E-06 51.7 3.3 32 266-301 14-45 (149)
390 PRK14960 DNA polymerase III su 93.2 0.63 1.4E-05 55.2 11.4 28 264-291 35-62 (702)
391 PF08477 Miro: Miro-like prote 93.2 0.065 1.4E-06 48.2 2.7 23 269-291 2-24 (119)
392 COG1855 ATPase (PilT family) [ 93.2 0.054 1.2E-06 60.7 2.5 28 266-293 263-290 (604)
393 PF00910 RNA_helicase: RNA hel 93.1 0.052 1.1E-06 49.2 2.0 22 269-290 1-22 (107)
394 TIGR03796 NHPM_micro_ABC1 NHPM 93.1 0.89 1.9E-05 54.4 12.9 112 264-377 503-639 (710)
395 COG4175 ProV ABC-type proline/ 93.1 0.066 1.4E-06 57.8 3.0 26 264-289 52-77 (386)
396 PRK14087 dnaA chromosomal repl 93.1 0.48 1E-05 54.0 10.1 39 268-306 143-185 (450)
397 cd03116 MobB Molybdenum is an 93.1 0.062 1.3E-06 52.6 2.6 26 267-292 2-27 (159)
398 PF03266 NTPase_1: NTPase; In 93.1 0.058 1.3E-06 53.3 2.3 22 269-290 2-23 (168)
399 TIGR03346 chaperone_ClpB ATP-d 93.1 1.1 2.3E-05 55.2 13.6 26 265-290 193-218 (852)
400 PRK14958 DNA polymerase III su 93.1 0.91 2E-05 52.5 12.4 28 264-291 36-63 (509)
401 PRK05636 replicative DNA helic 93.0 0.73 1.6E-05 53.3 11.5 107 264-379 263-383 (505)
402 PF06745 KaiC: KaiC; InterPro 93.0 0.27 5.9E-06 50.0 7.2 37 265-301 18-57 (226)
403 COG1132 MdlB ABC-type multidru 93.0 0.17 3.7E-06 58.8 6.5 102 265-368 354-479 (567)
404 TIGR00176 mobB molybdopterin-g 93.0 0.058 1.3E-06 52.5 2.2 24 268-291 1-24 (155)
405 PF00005 ABC_tran: ABC transpo 93.0 0.065 1.4E-06 49.8 2.4 35 265-299 10-45 (137)
406 COG1419 FlhF Flagellar GTP-bin 93.0 0.4 8.6E-06 53.6 8.8 40 265-304 202-245 (407)
407 PRK11034 clpA ATP-dependent Cl 93.0 0.68 1.5E-05 56.1 11.5 33 267-300 489-521 (758)
408 PRK12723 flagellar biosynthesi 92.9 0.083 1.8E-06 59.0 3.6 39 265-303 173-217 (388)
409 PRK14490 putative bifunctional 92.9 0.083 1.8E-06 58.4 3.6 29 265-293 4-32 (369)
410 TIGR00750 lao LAO/AO transport 92.9 0.096 2.1E-06 56.2 3.9 38 264-301 32-71 (300)
411 PRK05563 DNA polymerase III su 92.9 0.51 1.1E-05 55.2 10.1 28 264-291 36-63 (559)
412 COG1341 Predicted GTPase or GT 92.9 0.36 7.7E-06 53.8 8.3 114 263-380 70-210 (398)
413 PF03205 MobB: Molybdopterin g 92.8 0.059 1.3E-06 51.6 1.9 24 268-291 2-25 (140)
414 PRK14965 DNA polymerase III su 92.8 0.51 1.1E-05 55.4 10.0 28 264-291 36-63 (576)
415 TIGR00073 hypB hydrogenase acc 92.8 0.12 2.6E-06 52.2 4.3 29 263-291 19-47 (207)
416 TIGR03797 NHPM_micro_ABC2 NHPM 92.8 0.75 1.6E-05 54.9 11.6 112 265-378 478-613 (686)
417 TIGR01650 PD_CobS cobaltochela 92.7 0.093 2E-06 57.2 3.6 33 267-300 65-97 (327)
418 TIGR02203 MsbA_lipidA lipid A 92.7 1.3 2.8E-05 51.4 13.1 35 265-299 357-392 (571)
419 PRK09518 bifunctional cytidyla 92.7 0.07 1.5E-06 64.0 2.7 33 268-303 3-35 (712)
420 PRK12269 bifunctional cytidyla 92.7 0.11 2.3E-06 63.5 4.3 38 267-307 35-72 (863)
421 PRK06835 DNA replication prote 92.6 1 2.2E-05 49.4 11.3 41 267-307 184-226 (329)
422 cd04163 Era Era subfamily. Er 92.6 0.093 2E-06 48.8 3.0 24 266-289 3-26 (168)
423 PRK00411 cdc6 cell division co 92.6 0.21 4.6E-06 55.0 6.2 25 266-290 55-79 (394)
424 TIGR00763 lon ATP-dependent pr 92.6 0.11 2.5E-06 62.8 4.4 34 266-300 347-380 (775)
425 PRK10463 hydrogenase nickel in 92.6 0.14 3.1E-06 54.9 4.6 36 264-299 102-138 (290)
426 KOG0733 Nuclear AAA ATPase (VC 92.6 0.39 8.5E-06 55.9 8.3 40 265-305 222-261 (802)
427 PF01443 Viral_helicase1: Vira 92.5 0.071 1.5E-06 54.0 2.3 22 269-290 1-22 (234)
428 TIGR03345 VI_ClpV1 type VI sec 92.5 0.79 1.7E-05 56.3 11.5 24 267-290 209-232 (852)
429 PRK08939 primosomal protein Dn 92.5 1.2 2.6E-05 48.3 11.6 106 265-388 155-270 (306)
430 CHL00176 ftsH cell division pr 92.5 0.29 6.3E-06 58.0 7.6 37 266-303 216-252 (638)
431 COG4608 AppF ABC-type oligopep 92.5 0.86 1.9E-05 48.4 10.2 117 264-390 37-179 (268)
432 KOG0989 Replication factor C, 92.5 0.2 4.4E-06 53.9 5.5 28 265-292 56-83 (346)
433 TIGR03689 pup_AAA proteasome A 92.5 0.28 6.1E-06 56.6 7.2 26 266-291 216-241 (512)
434 cd03112 CobW_like The function 92.5 0.15 3.2E-06 49.6 4.2 25 268-292 2-26 (158)
435 TIGR00101 ureG urease accessor 92.4 0.16 3.4E-06 51.5 4.5 35 267-301 2-37 (199)
436 COG3842 PotA ABC-type spermidi 92.4 0.69 1.5E-05 51.0 9.7 25 264-288 29-53 (352)
437 PF03215 Rad17: Rad17 cell cyc 92.4 0.12 2.5E-06 59.9 4.0 27 265-291 44-70 (519)
438 TIGR02655 circ_KaiC circadian 92.3 0.69 1.5E-05 53.1 10.1 37 265-301 20-59 (484)
439 cd01124 KaiC KaiC is a circadi 92.3 0.13 2.8E-06 50.2 3.6 34 268-301 1-36 (187)
440 COG0464 SpoVK ATPases of the A 92.3 0.27 5.8E-06 56.3 6.8 29 263-291 273-301 (494)
441 PRK08533 flagellar accessory p 92.3 0.14 3.1E-06 52.8 4.1 37 265-301 23-61 (230)
442 PF01078 Mg_chelatase: Magnesi 92.3 0.1 2.2E-06 53.4 2.9 26 267-292 23-48 (206)
443 KOG0057 Mitochondrial Fe/S clu 92.3 1.8 3.9E-05 50.0 13.0 33 266-298 378-410 (591)
444 PRK13657 cyclic beta-1,2-gluca 92.2 1.6 3.4E-05 51.1 13.1 35 265-299 360-395 (588)
445 TIGR02204 MsbA_rel ABC transpo 92.2 1.6 3.4E-05 50.8 13.0 35 265-299 365-400 (576)
446 PRK08760 replicative DNA helic 92.2 0.72 1.6E-05 52.9 10.0 37 264-300 227-266 (476)
447 PRK10790 putative multidrug tr 92.2 1.7 3.6E-05 50.9 13.3 35 265-299 366-401 (592)
448 PRK08451 DNA polymerase III su 92.2 0.76 1.6E-05 53.5 10.2 27 264-290 34-60 (535)
449 TIGR00665 DnaB replicative DNA 92.1 1.5 3.3E-05 49.3 12.4 38 264-301 193-233 (434)
450 PRK15064 ABC transporter ATP-b 92.1 1.7 3.6E-05 50.3 12.9 26 265-290 26-51 (530)
451 PF10662 PduV-EutP: Ethanolami 92.1 0.096 2.1E-06 50.6 2.3 24 267-290 2-25 (143)
452 PRK07994 DNA polymerase III su 92.0 1 2.3E-05 53.5 11.3 27 265-291 37-63 (647)
453 TIGR03600 phage_DnaB phage rep 92.0 1.2 2.6E-05 50.1 11.3 37 264-300 192-231 (421)
454 PLN03130 ABC transporter C fam 92.0 0.57 1.2E-05 61.3 9.9 107 264-379 641-766 (1622)
455 PRK05896 DNA polymerase III su 92.0 0.92 2E-05 53.4 10.6 27 265-291 37-63 (605)
456 PRK10789 putative multidrug tr 92.0 1.9 4.1E-05 50.3 13.4 27 265-291 340-366 (569)
457 PRK13768 GTPase; Provisional 91.9 0.14 3.1E-06 53.6 3.7 36 266-301 2-39 (253)
458 PF09848 DUF2075: Uncharacteri 91.8 1 2.2E-05 49.4 10.3 24 267-290 2-25 (352)
459 PRK10787 DNA-binding ATP-depen 91.8 0.14 3E-06 62.1 3.8 36 265-301 348-383 (784)
460 TIGR00390 hslU ATP-dependent p 91.8 0.13 2.8E-06 57.8 3.4 32 266-298 47-78 (441)
461 PRK14948 DNA polymerase III su 91.8 0.59 1.3E-05 55.3 8.9 26 266-291 38-63 (620)
462 COG0630 VirB11 Type IV secreto 91.8 0.45 9.7E-06 51.6 7.3 118 266-390 143-263 (312)
463 cd01983 Fer4_NifH The Fer4_Nif 91.7 0.1 2.3E-06 44.3 2.0 24 268-291 1-24 (99)
464 cd01394 radB RadB. The archaea 91.7 0.15 3.3E-06 51.5 3.5 37 265-301 18-56 (218)
465 PF07726 AAA_3: ATPase family 91.7 0.12 2.5E-06 49.2 2.4 29 269-298 2-30 (131)
466 PRK09165 replicative DNA helic 91.7 1.1 2.3E-05 51.9 10.6 25 264-288 215-239 (497)
467 COG2274 SunT ABC-type bacterio 91.7 0.29 6.3E-06 58.7 6.2 112 265-378 498-634 (709)
468 TIGR00602 rad24 checkpoint pro 91.7 0.72 1.6E-05 54.7 9.4 27 265-291 109-135 (637)
469 PRK14971 DNA polymerase III su 91.6 0.67 1.5E-05 54.8 9.2 28 264-291 37-64 (614)
470 TIGR02237 recomb_radB DNA repa 91.6 0.16 3.5E-06 50.9 3.5 37 265-301 11-49 (209)
471 TIGR00958 3a01208 Conjugate Tr 91.6 0.55 1.2E-05 56.4 8.6 36 264-299 505-541 (711)
472 cd04137 RheB Rheb (Ras Homolog 91.6 0.13 2.7E-06 49.9 2.6 21 269-289 4-24 (180)
473 cd03255 ABC_MJ0796_Lo1CDE_FtsE 91.6 0.14 3.1E-06 51.6 3.1 34 265-298 29-63 (218)
474 PRK05201 hslU ATP-dependent pr 91.6 0.16 3.5E-06 57.2 3.7 33 266-299 50-82 (443)
475 cd03114 ArgK-like The function 91.6 0.17 3.6E-06 48.8 3.4 34 268-301 1-36 (148)
476 PRK07133 DNA polymerase III su 91.6 1.2 2.7E-05 53.4 11.2 28 264-291 38-65 (725)
477 PRK06995 flhF flagellar biosyn 91.5 0.16 3.4E-06 58.3 3.7 38 265-302 255-296 (484)
478 PRK06321 replicative DNA helic 91.5 1.3 2.9E-05 50.8 11.1 37 264-300 224-263 (472)
479 PRK05342 clpX ATP-dependent pr 91.5 0.14 3.1E-06 57.6 3.3 33 267-300 109-141 (412)
480 TIGR00231 small_GTP small GTP- 91.5 0.14 2.9E-06 46.8 2.6 22 269-290 4-25 (161)
481 TIGR00767 rho transcription te 91.5 0.63 1.4E-05 52.2 8.2 27 265-291 167-193 (415)
482 PRK13545 tagH teichoic acids e 91.5 1.9 4.2E-05 50.1 12.4 27 265-291 49-75 (549)
483 TIGR01842 type_I_sec_PrtD type 91.5 2.2 4.7E-05 49.5 13.1 27 265-291 343-369 (544)
484 PF00931 NB-ARC: NB-ARC domain 91.5 0.15 3.3E-06 53.2 3.3 26 264-289 17-42 (287)
485 cd00154 Rab Rab family. Rab G 91.4 0.14 3E-06 47.2 2.7 21 269-289 3-23 (159)
486 TIGR02782 TrbB_P P-type conjug 91.4 0.19 4.2E-06 54.1 4.1 114 266-391 132-252 (299)
487 PRK05973 replicative DNA helic 91.4 0.18 3.8E-06 52.7 3.7 45 264-308 62-112 (237)
488 PRK13541 cytochrome c biogenes 91.4 0.16 3.4E-06 50.7 3.2 27 265-291 25-51 (195)
489 PF03796 DnaB_C: DnaB-like hel 91.4 0.64 1.4E-05 48.5 7.9 104 265-377 18-136 (259)
490 TIGR01193 bacteriocin_ABC ABC- 91.4 2.5 5.4E-05 50.7 13.8 36 264-299 498-534 (708)
491 PF01926 MMR_HSR1: 50S ribosom 91.4 0.14 3.1E-06 46.2 2.6 21 269-289 2-22 (116)
492 PRK14953 DNA polymerase III su 91.4 1.7 3.6E-05 50.1 11.8 28 264-291 36-63 (486)
493 cd03292 ABC_FtsE_transporter F 91.4 0.15 3.3E-06 51.2 3.1 27 265-291 26-52 (214)
494 cd02034 CooC The accessory pro 91.4 0.18 3.8E-06 46.8 3.2 33 269-301 2-36 (116)
495 PRK05703 flhF flagellar biosyn 91.4 0.16 3.5E-06 57.3 3.6 38 266-303 221-262 (424)
496 PF13555 AAA_29: P-loop contai 91.4 0.18 3.9E-06 41.9 2.9 23 266-288 23-45 (62)
497 cd03225 ABC_cobalt_CbiO_domain 91.3 0.16 3.5E-06 50.9 3.2 34 265-298 26-60 (211)
498 smart00173 RAS Ras subfamily o 91.3 0.14 3.1E-06 48.4 2.7 21 269-289 3-23 (164)
499 COG2805 PilT Tfp pilus assembl 91.3 0.44 9.5E-06 51.4 6.5 86 266-357 125-211 (353)
500 PRK15455 PrkA family serine pr 91.3 0.14 3E-06 59.7 3.0 26 266-291 103-128 (644)
No 1
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=9.8e-34 Score=300.85 Aligned_cols=174 Identities=34% Similarity=0.563 Sum_probs=156.3
Q ss_pred CCceecCcCCCCCCeEEcCCCceEeecCCCCccceeeeeeeeeeEe-CcEEEEEEEEEecCCCCCCCCCCCCCCcEEEEE
Q 005604 41 KQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGIN-GGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGT 119 (688)
Q Consensus 41 ~~~v~Ls~~D~~~~l~Is~dgl~v~~~~~~g~~~~w~~vRAn~gv~-~Gk~YfEV~I~~~~~~~~~~t~~~~~g~irVGw 119 (688)
...|++|+.|+++.|.|++|||.+++.. -+.|-+||||.|+. .|||||||+|.+ .|+|||||
T Consensus 86 ~~~w~mn~~Drg~alaI~~dGL~CqSre----~KeWhGcRaT~Gl~gkGK~YyEvtitd-------------~GLCRVGW 148 (725)
T KOG0349|consen 86 PREWKMNKQDRGLALAIDEDGLACQSRE----KKEWHGCRATAGLYGKGKYYYEVTITD-------------KGLCRVGW 148 (725)
T ss_pred ccccccCccccCceeeEcCCccccchhH----HhhhhccccccccccCceEEEEEEecc-------------Cceeeech
Confidence 3459999999999999999999998753 47899999999999 899999999985 58999999
Q ss_pred ecCCCCCCCCCCCCcceEEccCCceeeCCCcccCCCCCCCCCEEEEEEecCCCCccEEEEEECCeeeeeeeeccCCCCCc
Q 005604 120 SRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGL 199 (688)
Q Consensus 120 st~~~~~~~lG~d~~SyGy~g~G~~~~~~~~~~YG~~f~~GDVIGC~LDl~~~p~~~I~FtkNG~~LG~Af~~~~~~~~L 199 (688)
||.. .+.-||.+..+|||.|+|++.++.+|.+||++|+..|||||+||+++ ++|+|+|||+.||.||+++...
T Consensus 149 sT~q-asLdlGt~~~gFGfGGTGkKS~nkqFDdYGe~Ft~~DvIGCyLDld~---~~v~fsKNG~~lg~AF~ip~~~--- 221 (725)
T KOG0349|consen 149 STLQ-ASLDLGTGLDGFGFGGTGKKSTNKQFDDYGEPFTLNDVIGCYLDLDS---RTVWFSKNGEQLGAAFSIPVKY--- 221 (725)
T ss_pred hhcc-cccccCccccccccCccCccccccccccccCcccccceeeEEEeccC---ceEEEecCccccceeEEcChhh---
Confidence 9977 46789999999999999999999999999999999999999999999 8999999999999999987543
Q ss_pred ccccccccccccCCcceeEEEEcCeEEEEEccCCCCCCC-ccCchhhhhhc
Q 005604 200 GVVDSAVKERQCESAVFPHILLKNVVVVMQFSVEQGLIP-VEGYKSWVSAL 249 (688)
Q Consensus 200 ~la~~d~~g~~~~~~lfPaVsl~n~~v~vNFG~~~~~~p-~~gf~p~~~a~ 249 (688)
....|||||.|+|+++.||||.++|.|| -+||.....|.
T Consensus 222 -----------kn~~lfPAvvlkNael~fNFG~~~FKfpPgngFva~s~Ap 261 (725)
T KOG0349|consen 222 -----------KNSNLFPAVVLKNAELSFNFGSQPFKFPPGNGFVAVSDAP 261 (725)
T ss_pred -----------cccccchheeeccceEEEecCCCccccCCCCceEEeecCC
Confidence 3578999999999999999999876555 47888777664
No 2
>KOG2626 consensus Histone H3 (Lys4) methyltransferase complex, subunit CPS60/ASH2/BRE2 [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=1.5e-27 Score=260.11 Aligned_cols=167 Identities=25% Similarity=0.326 Sum_probs=147.3
Q ss_pred CCceecCcCCCCCCeEEcCCCceEeecCCCCccceeeeeeeeeeEeCcEEEEEEEEEecCCCCCCCCCCCCCCcEEEEEe
Q 005604 41 KQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTS 120 (688)
Q Consensus 41 ~~~v~Ls~~D~~~~l~Is~dgl~v~~~~~~g~~~~w~~vRAn~gv~~Gk~YfEV~I~~~~~~~~~~t~~~~~g~irVGws 120 (688)
...|+|++.|++.+|.|++|.|+++. .+++++|||+|||.+|.|||||+|++. + +..++|+||+
T Consensus 290 ~~tv~l~~hdrA~ql~Is~drlt~tg------eKGy~MvRAshgv~~G~WYFEI~vd~~-p---------d~~a~RlGws 353 (544)
T KOG2626|consen 290 MDTVNLSWHDRAEQLKISEDRLTATG------EKGYRMVRASHGVLEGAWYFEIKVDEM-P---------DDAAIRLGWS 353 (544)
T ss_pred hhhhhhhhhcccccccccccceeeec------ccceeeeeecccccccceeEEEEeecC-C---------Cccceeeecc
Confidence 45899999999999999999999987 489999999999999999999999875 2 4689999999
Q ss_pred cCCCC-CCCCCCCCcceEEc-cCCceeeCCCcccCCCCCCCCCEEEEEEecCC---------------------------
Q 005604 121 RGDDP-VGKLGETEQSFGFG-GTGKFSHGGNFLNFGEKFGVGDTIICAIDLES--------------------------- 171 (688)
Q Consensus 121 t~~~~-~~~lG~d~~SyGy~-g~G~~~~~~~~~~YG~~f~~GDVIGC~LDl~~--------------------------- 171 (688)
+.... +.+||.|++||+|+ .+|.++|.+....|-..|+.||||||+|+|..
T Consensus 354 q~~g~LqApvGYdkfsY~wRdk~GtKfh~s~gk~Y~~gf~qGDvLGf~I~LP~~~~~~~~lp~~~kdk~lI~yK~~lyfe 433 (544)
T KOG2626|consen 354 QLYGNLQAPVGYDKFSYGWRDKKGTKFHESLGKHYSDGFGQGDVLGFYINLPKDLSPEKYLPLTHKDKFLIKYKGHLYFE 433 (544)
T ss_pred ccccccccccccccccccccccCCcchhhhhhhhhhhhccCCceEEEEEecCCcccccccCCccccccceeeeeeeeEEE
Confidence 97754 88999999999996 57999999999999999999999999999986
Q ss_pred --------------CCccEEEEEECCeeeeeeeeccCCCCCcccccccccccccCCcceeEEEEc-CeEEEEEccCCCCC
Q 005604 172 --------------KPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK-NVVVVMQFSVEQGL 236 (688)
Q Consensus 172 --------------~p~~~I~FtkNG~~LG~Af~~~~~~~~L~la~~d~~g~~~~~~lfPaVsl~-n~~v~vNFG~~~~~ 236 (688)
.|...|.|+|||+.+|+||+... ..+.|||+||+. +|.|++|||+.+.+
T Consensus 434 ~~d~v~k~~k~l~~~pgS~I~f~KNG~~qG~Ay~ni~----------------~~G~YyPaIS~yks~tv~~nfGP~F~~ 497 (544)
T KOG2626|consen 434 DPDNVAKIEKTLKIKPGSEIEFFKNGVSQGVAYENIY----------------KAGAYYPAISIYKSCTVKFNFGPQFRY 497 (544)
T ss_pred ccchhhhhhhccccCCCceEEEeecccchhhhhhhhh----------------ccccccceeeecccceEEEeccccccC
Confidence 14468999999999999998210 136899999998 89999999999988
Q ss_pred CCc
Q 005604 237 IPV 239 (688)
Q Consensus 237 ~p~ 239 (688)
+|.
T Consensus 498 ~p~ 500 (544)
T KOG2626|consen 498 PPC 500 (544)
T ss_pred Ccc
Confidence 753
No 3
>PF00622 SPRY: SPRY domain; InterPro: IPR003877 The SPRY domain is of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin []. Ca2+-release from the sarcoplasmic or endoplasmic reticulum, the intracellular Ca2+ store, is mediated by the ryanodine receptor (RyR) and/or the inositol trisphosphate receptor (IP3R).; GO: 0005515 protein binding; PDB: 2V24_A 3EK9_A 2AFJ_A 2IWG_E 3EMW_A 2WL1_A 3TOJ_B 2VOK_A 2VOL_B 2FNJ_A ....
Probab=99.83 E-value=6.1e-20 Score=168.08 Aligned_cols=116 Identities=29% Similarity=0.469 Sum_probs=98.4
Q ss_pred CcEEEEEEEEEecCCCCCCCCCCCCCCcEEEEEecCCC----CCCCCCCCCcceEEccCC-ceeeCCCcccCCCCCCC-C
Q 005604 87 GGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDD----PVGKLGETEQSFGFGGTG-KFSHGGNFLNFGEKFGV-G 160 (688)
Q Consensus 87 ~Gk~YfEV~I~~~~~~~~~~t~~~~~g~irVGwst~~~----~~~~lG~d~~SyGy~g~G-~~~~~~~~~~YG~~f~~-G 160 (688)
+|+|||||+|... ..++|||++.+. ....+|++..||+|+..+ +++++.....++.+++. |
T Consensus 1 sG~~YwEV~v~~~-------------~~~~iGv~~~~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (124)
T PF00622_consen 1 SGKHYWEVEVDSG-------------GSISIGVATSSASVSGDENLSGYDPFSWGFHGDGGKKYHGGTSEETGSPFQEPG 67 (124)
T ss_dssp SSEEEEEEEETGG-------------CTEEEEEEETTSEESSSTS-TTSSTTEEEEETTTTTEEESTSSSECSCTSSTTT
T ss_pred CcCEEEEEEEecC-------------cCEEEEEeECccccCCccccCCccccceeeeccccccceeecccccccccccCC
Confidence 5999999999864 239999999876 256889999999999877 88899888999999998 9
Q ss_pred CEEEEEEecCCCCccEEEEEECCeeee-eeeeccCCCCCcccccccccccccCCcceeEEEEc-CeEEEEEccCCC
Q 005604 161 DTIICAIDLESKPLATIGFAKNGKWLG-TAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK-NVVVVMQFSVEQ 234 (688)
Q Consensus 161 DVIGC~LDl~~~p~~~I~FtkNG~~LG-~Af~~~~~~~~L~la~~d~~g~~~~~~lfPaVsl~-n~~v~vNFG~~~ 234 (688)
|||||+||++. ++|+|++||+.++ .+|+. .. ....|||+|++. ++++++|||++|
T Consensus 68 dvIG~~lD~~~---g~l~F~~ng~~~~~~~f~~-~~---------------~~~~l~P~v~~~~~~~~~~n~g~~~ 124 (124)
T PF00622_consen 68 DVIGCGLDLDN---GELSFYKNGKFLGIYAFTD-ID---------------FSEPLYPAVSLGGGQSVELNFGQRP 124 (124)
T ss_dssp SEEEEEEETTT---TEEEEEETTEEEEEEEEES-CT---------------TSSSBEEEEEEESTSEEEEEEEC--
T ss_pred cEEEEEEeecc---cEEEEEECCccceeEEEEC-CC---------------CCCcEEEEEEecCCCEEEEEeCCCC
Confidence 99999999998 8999999999999 77761 11 135899999999 899999999975
No 4
>smart00449 SPRY Domain in SPla and the RYanodine Receptor. Domain of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin homologues.
Probab=99.82 E-value=1.2e-19 Score=166.50 Aligned_cols=114 Identities=33% Similarity=0.519 Sum_probs=97.4
Q ss_pred CcEEEEEEEEEecCCCCCCCCCCCCCCcEEEEEecCCCC---CCCCCCCCcceEEccCC-ceeeCCCcccCCCCCCC-CC
Q 005604 87 GGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDP---VGKLGETEQSFGFGGTG-KFSHGGNFLNFGEKFGV-GD 161 (688)
Q Consensus 87 ~Gk~YfEV~I~~~~~~~~~~t~~~~~g~irVGwst~~~~---~~~lG~d~~SyGy~g~G-~~~~~~~~~~YG~~f~~-GD 161 (688)
+|+|||||+|.+ .+.++|||++.... ...+|++.+||+|+.++ +++++.....|+.++.. ||
T Consensus 1 sG~~YwEV~v~~-------------~~~~~vGv~~~~~~r~~~~~~G~~~~sw~~~~~~g~~~~~~~~~~~~~~~~~~gd 67 (122)
T smart00449 1 SGRHYFEVEIFD-------------GGHWRVGVATKSVPRGYFALLGEDKGSWGYDGDGGKKYHNSTGPEYGLPLQEPGD 67 (122)
T ss_pred CCcEEEEEEEcC-------------CCeEEEEEEcCccCCCccccCCCCCCEEEEEcCCCcEEeCCCCCccCccccCCCC
Confidence 589999999984 36899999997754 56899999999998765 78888777789999997 99
Q ss_pred EEEEEEecCCCCccEEEEEECCeee-eeeeeccCCCCCcccccccccccccCCcceeEEEEc-CeEEEEEccC
Q 005604 162 TIICAIDLESKPLATIGFAKNGKWL-GTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK-NVVVVMQFSV 232 (688)
Q Consensus 162 VIGC~LDl~~~p~~~I~FtkNG~~L-G~Af~~~~~~~~L~la~~d~~g~~~~~~lfPaVsl~-n~~v~vNFG~ 232 (688)
||||+||++. ++|+|++||+.+ +.+|... . ...++||+|++. .+.+.+|||+
T Consensus 68 ~iGv~lD~~~---g~l~F~~ng~~~~~~~f~~~-~---------------~~~~l~P~~~~~~~~~~~~n~g~ 121 (122)
T smart00449 68 VIGCFLDLEA---GTISFYKNGKYLHGLAFFDV-K---------------FSGPLYPAVSLGSGCSVRLNFGP 121 (122)
T ss_pred EEEEEEECCC---CEEEEEECCCEeeeEEEecc-C---------------CCCcEeeEEEcCCCCEEEEEecC
Confidence 9999999998 899999999999 8998611 1 145899999998 4589999996
No 5
>KOG2242 consensus Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain [RNA processing and modification]
Probab=99.81 E-value=4.3e-21 Score=217.43 Aligned_cols=392 Identities=33% Similarity=0.448 Sum_probs=296.0
Q ss_pred CCCCCCCceecCcCCCCCCeEEcCCCceEeecCCCCccceeeeeeeeeeEeCcEEEEEEEEEecCCCCCCCCCCCCCCcE
Q 005604 36 GPRSQKQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVC 115 (688)
Q Consensus 36 ~~~~~~~~v~Ls~~D~~~~l~Is~dgl~v~~~~~~g~~~~w~~vRAn~gv~~Gk~YfEV~I~~~~~~~~~~t~~~~~g~i 115 (688)
..++ +..++.|..+|+.+ ....+.......+.+.++..|.+.|+-+++..+...||-++.+.....+...........
T Consensus 31 ~~~~-~~~~~~d~~~c~~~-~~~~~~~~~~~~~~e~~~~~~~~~r~a~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 108 (558)
T KOG2242|consen 31 EWHF-DTIVCIDTYNCDLH-KYRRDRSSGYALTKERFAGPWDGARAAYSVSRGEVCFEMRINEPEEVPHFQPLEPDPHDV 108 (558)
T ss_pred cccc-ceeeechhhhhhhh-hcccccccccccchhhccccCcccceeeeecCCcchhhcccccccccCCCCccccccccc
Confidence 3455 77788899999999 888888777777777788899999999999999888888887664443333333456788
Q ss_pred EEEEecCCCCCCCCCCCCcceEEccCCceeeCCCcccCCCCCCCCCEEEEEEecCCCCccEEEEEECCeeeeeeeeccCC
Q 005604 116 RVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAG 195 (688)
Q Consensus 116 rVGwst~~~~~~~lG~d~~SyGy~g~G~~~~~~~~~~YG~~f~~GDVIGC~LDl~~~p~~~I~FtkNG~~LG~Af~~~~~ 195 (688)
+|+|+... ....++++..+++|...+++.++..+..|+++|.+.|+|||.++........+.|.|||+.++++|.++..
T Consensus 109 ~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~f~e~~~i~c~~~~~~~d~~~l~~~k~~~~~~~~~~l~~~ 187 (558)
T KOG2242|consen 109 RIGWSLDS-IRTLLGDEPFSYGYSETGKKSCNSEVEKYGEKFPENDVIGCFADFEILDEVELSYEKNGQDLGESFLLSKE 187 (558)
T ss_pred cccccchh-hhhccccccccccccccccchhhHHHHHHHhhcccccccchhhcccccccCcchhhhccchhhhhhcchhh
Confidence 99999855 35688999999999999999999999999999999999999999876444688999999999999876532
Q ss_pred CCCcccccccccccccCCcceeEEEEcCeEEEEEccCCC-CCCCccCchhhhhhccCCCcccCCccC-CCCcceEEEEec
Q 005604 196 SNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFSVEQ-GLIPVEGYKSWVSALDDGNSVLGPTFC-NMKDCEVMMMVG 273 (688)
Q Consensus 196 ~~~L~la~~d~~g~~~~~~lfPaVsl~n~~v~vNFG~~~-~~~p~~gf~p~~~a~~~~~~v~~P~~~-~~~~~~LIILvG 273 (688)
. .....++|+|..++|.|..+||+.. .+.+..-...+..++.-+..+..|..+ ....|.+++++|
T Consensus 188 ~-------------~~~~~~~p~vl~~~~~ve~~f~~~~ag~~~v~~~~~~i~~~~~~~~~~~~~~p~~~~~c~~~~~~g 254 (558)
T KOG2242|consen 188 D-------------LGGQALYPHVLRKNCAVEGNFGQKAAGYEPVKEEYTFIQNYPLEERLRGPVGPETKKECEVFMMRG 254 (558)
T ss_pred h-------------ccCcccCcccccCcceeccccccccccccccchhhhhhhhcchhhcccCCCCccccccchhhhccc
Confidence 1 1345799999999999999999975 233332223334444333445556544 567899999999
Q ss_pred cCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHH-HHhcCCCeEEEEcC
Q 005604 274 LPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLS-RASRTPRNFIIDQT 352 (688)
Q Consensus 274 LPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie-~aL~~G~nVILDaT 352 (688)
+||+||++|+-....+.+.+..-+...-.+...++..|......+...+..++.++..|+..++. +++...++.|+|.+
T Consensus 255 ~~~~g~~~~~le~~~q~~~~~~~i~g~~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~~~r~~~~d~~ 334 (558)
T KOG2242|consen 255 LPGAGKTSWALEPAAQNPEKGGNILGGNTIMPKMRVVGLEEQTNDAFSRGYLIQQAGQCLNKLPRDIFLRKKRNYILDQT 334 (558)
T ss_pred ccccccchhhhhhhhhCccccCCccccccccCCcCcccchhhhhccccccchhhccccccccchhhhhhhhhhhhhhhcc
Confidence 99999999999998887755433343334444444344321112222344556666667766665 77899999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHhhccCCCCCcHHHHHhhhcccccCCCCCCCCCCCCCcEEEEec
Q 005604 353 NVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVNKDTPGSDELFDQVMFVE 432 (688)
Q Consensus 353 Nl~rs~R~~~l~~~a~~~~~~vV~~~~peel~~R~~kR~~~~g~~Vpeevi~~m~a~fE~P~~~~~p~~~EgfdeI~~~e 432 (688)
|++.+.+.+.+..++.+.++..+++++.+.+..+...|...+..++++.+...|.+.+..+.. ..-.+++-...
T Consensus 335 ~~s~~~~~r~~~~~~~~~~~~p~~~~~~~d~~s~~~v~~~~~~~d~~~~~~~e~~~~~~~~~~------~~~~~~~~~~~ 408 (558)
T KOG2242|consen 335 NLSSSAQRRKMGLFSQFSRKAPVVCPAFEDLKSRTIVRTEVEGKDVGETAVLEMNANFTLPGV------MDYMDETGDSE 408 (558)
T ss_pred ccchhhceecccccccccccCCCcCCchhhhccccceEeeeecccCCcceEEEEeeeeccCch------hhhhhhccccc
Confidence 999998888888888777788888999999999999988777788888888889999988775 55666666666
Q ss_pred cCHHHHHHHHHHHHhcC
Q 005604 433 LDREEAQRHLDEMKGTL 449 (688)
Q Consensus 433 l~~~ea~~li~~~~~~~ 449 (688)
+..++++.+.++++...
T Consensus 409 ~~~~e~~~~~~~~~~~~ 425 (558)
T KOG2242|consen 409 LLKEEAYGIGDQYSEEA 425 (558)
T ss_pred cchhhcccccccHhHHh
Confidence 77777777777765444
No 6
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.80 E-value=9.9e-19 Score=163.97 Aligned_cols=139 Identities=27% Similarity=0.420 Sum_probs=102.3
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNF 347 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL~~G~nV 347 (688)
||+|+|+|||||||||+.|.+.++ +.+|+.|.++.++..........+.. ..+.+.+.+..+++.++..|.+|
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~---~~~i~~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~g~~~ 73 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG---AVVISQDEIRRRLAGEDPPSPSDYIE----AEERAYQILNAAIRKALRNGNSV 73 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST---EEEEEHHHHHHHHCCSSSGCCCCCHH----HHHHHHHHHHHHHHHHHHTT-EE
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC---CEEEeHHHHHHHHcccccccchhHHH----HHHHHHHHHHHHHHHHHHcCCCc
Confidence 799999999999999999998887 88999999988764211111111122 22233444556677788999999
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCC-CEEEEEeCCH-HHHHHHHHHhhccCCC--CCcHHHHHhhhcccccC
Q 005604 348 IIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGK--EVPADAVNNMLANYVLP 413 (688)
Q Consensus 348 ILDaTNl~rs~R~~~l~~~a~~~-~~~vV~~~~p-eel~~R~~kR~~~~g~--~Vpeevi~~m~a~fE~P 413 (688)
|||+||+.++.|.++++.+++++ .+.+|+|+++ +++.+|+.+|....++ .++++++++|++.||+|
T Consensus 74 vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~e~p 143 (143)
T PF13671_consen 74 VVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNREGDKRFEVPEEVFDRMLARFEPP 143 (143)
T ss_dssp EEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCCCTTS----HHHHHHHHHHHH--
T ss_pred eeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCcccccccCcHHHHHHHHHhhccC
Confidence 99999999999998888777776 7888899987 8999999999865432 48999999999999987
No 7
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.80 E-value=2.1e-18 Score=195.15 Aligned_cols=149 Identities=19% Similarity=0.237 Sum_probs=122.0
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRT 343 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL~~ 343 (688)
..++||||+|+|||||||||++++...+ +++|+.|++. .|+.+. .+++.+|++
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~~g---~~~vn~D~lg----------------~~~~~~--------~~a~~~L~~ 419 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQPAG---YKHVNADTLG----------------STQNCL--------TACERALDQ 419 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHcC---CeEECcHHHH----------------HHHHHH--------HHHHHHHhC
Confidence 5689999999999999999999998765 8899998641 122221 245677899
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhcCC-CEEEEEeCCH-HHHHHHHHHhhccCC--CCCcHHHHHhhhcccccCCCCCCC
Q 005604 344 PRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMG--KEVPADAVNNMLANYVLPVNKDTP 419 (688)
Q Consensus 344 G~nVILDaTNl~rs~R~~~l~~~a~~~-~~~vV~~~~p-eel~~R~~kR~~~~g--~~Vpeevi~~m~a~fE~P~~~~~p 419 (688)
|++||||+||+.++.|++|++++++++ .+.+++|+++ ++|++|++.|..... ..++++++..|+++||.|..
T Consensus 420 G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~~~~s~~~vp~~v~~~~~k~fE~Pt~---- 495 (526)
T TIGR01663 420 GKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFRELSDSAHIKIKDMVFNGMKKKFEAPAL---- 495 (526)
T ss_pred CCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhccCCcccCCCCHHHHHHHHhhCCCCCc----
Confidence 999999999999999999888888776 7888899887 899999999975322 36789999999999999986
Q ss_pred CCCCCCcEEEEecc----CHHHHHHHHHHH
Q 005604 420 GSDELFDQVMFVEL----DREEAQRHLDEM 445 (688)
Q Consensus 420 ~~~EgfdeI~~~el----~~~ea~~li~~~ 445 (688)
.|||++|+.+.. ..++.+++..+|
T Consensus 496 --~EGF~~I~~v~f~~~~~~~~~~~~~~~~ 523 (526)
T TIGR01663 496 --AEGFIAIHEINFKPLFADEKLEKLYCMF 523 (526)
T ss_pred --ccCceEEEEEeCccCcCCHHHHHHHHHH
Confidence 899999987753 356778887776
No 8
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.76 E-value=3.8e-18 Score=169.18 Aligned_cols=149 Identities=20% Similarity=0.317 Sum_probs=109.3
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCCCceE--EEEcchHHHHHhhcCCccccCCChHHH-HHHHHHHHHHHHHHHHHHhcC
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRY--ILLGTNLILEQMKVPGLLRKHNYSERF-QCLMGRANAIFDVLLSRASRT 343 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~~k~~--vvIStD~Ir~~m~i~G~~r~~~y~~~~-e~l~~~a~~~l~~lie~aL~~ 343 (688)
.|||++|+|||||||+|+.|++.+..+.+ ++++.|..+- +..+ ... ..| +.+.+-..+...+++..|++
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~---i~~D---Esl-pi~ke~yres~~ks~~rlldSalk- 73 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRG---ILWD---ESL-PILKEVYRESFLKSVERLLDSALK- 73 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhh---eecc---ccc-chHHHHHHHHHHHHHHHHHHHHhc-
Confidence 48999999999999999999988764433 3444443211 1111 111 111 12222112222235555665
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhcCC-CEEEEEeCCH-HHHHHHHHHhhccCCCCCcHHHHHhhhcccccCCCCCCCCC
Q 005604 344 PRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVNKDTPGS 421 (688)
Q Consensus 344 G~nVILDaTNl~rs~R~~~l~~~a~~~-~~~vV~~~~p-eel~~R~~kR~~~~g~~Vpeevi~~m~a~fE~P~~~~~p~~ 421 (688)
+.-||+|+||+..++|+++.+..++.. .+|||++.++ ++|++||..| +..+|+||+++|+.+||.|..
T Consensus 74 n~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~er----gepip~Evl~qly~RfEePn~------ 143 (261)
T COG4088 74 NYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRER----GEPIPEEVLRQLYDRFEEPNP------ 143 (261)
T ss_pred ceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccC----CCCCCHHHHHHHHHhhcCCCC------
Confidence 789999999999999999888877765 8999999997 9999999777 789999999999999999885
Q ss_pred CCCCcEEEEecc
Q 005604 422 DELFDQVMFVEL 433 (688)
Q Consensus 422 ~EgfdeI~~~el 433 (688)
..+||+..++-+
T Consensus 144 ~~rWDspll~id 155 (261)
T COG4088 144 DRRWDSPLLVID 155 (261)
T ss_pred CccccCceEEEe
Confidence 899999998744
No 9
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=99.75 E-value=1.2e-17 Score=175.42 Aligned_cols=147 Identities=22% Similarity=0.343 Sum_probs=98.0
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCCC--ceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP 344 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~~--k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL~~G 344 (688)
-||||||+|||||||+|++|.+.+.. ..+++|+.|.+.-. . . .|.+. .-.+.++..++..++++|...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~---~----~-~y~~~--~~Ek~~R~~l~s~v~r~ls~~ 71 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGID---R----N-DYADS--KKEKEARGSLKSAVERALSKD 71 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-T---T----S-SS--G--GGHHHHHHHHHHHHHHHHTT-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccc---h----h-hhhch--hhhHHHHHHHHHHHHHhhccC
Confidence 48999999999999999999875432 34677886655411 1 1 13211 112334556777888999999
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHhcCC-CEEEEEeCCH-HHHHHHHHHhhccCCCCCcHHHHHhhhcccccCCCCCCCCCC
Q 005604 345 RNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVNKDTPGSD 422 (688)
Q Consensus 345 ~nVILDaTNl~rs~R~~~l~~~a~~~-~~~vV~~~~p-eel~~R~~kR~~~~g~~Vpeevi~~m~a~fE~P~~~~~p~~~ 422 (688)
..||||++|+.+++|+++++.++.++ .+++|+|.++ |+|++||.+|.. ...+++++|++|..+||.|.. .
T Consensus 72 ~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~--~~~~~~e~i~~m~~RfE~P~~------~ 143 (270)
T PF08433_consen 72 TIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPE--PERYPEETIDDMIQRFEEPDP------K 143 (270)
T ss_dssp SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT---S--S-HHHHHHHHHH---TTS------S
T ss_pred eEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCC--CCCCCHHHHHHHHHHhcCCCC------C
Confidence 99999999999999999999888877 8999999998 999999999942 335999999999999999985 7
Q ss_pred CCCcEEEEe
Q 005604 423 ELFDQVMFV 431 (688)
Q Consensus 423 EgfdeI~~~ 431 (688)
..||...|+
T Consensus 144 nrWD~plf~ 152 (270)
T PF08433_consen 144 NRWDSPLFT 152 (270)
T ss_dssp -GGGS-SEE
T ss_pred CCccCCeEE
Confidence 889988776
No 10
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.71 E-value=1.2e-16 Score=165.26 Aligned_cols=143 Identities=23% Similarity=0.467 Sum_probs=109.2
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCC--ceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR 345 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~--k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL~~G~ 345 (688)
||+|+|+|||||||+|+.|++.+.. ..+++++.|.+++.+. . +...++. .+......+++.+++.+.
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~---~-----~~~~~e~---~~~~~~~~~i~~~l~~~~ 69 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFP---V-----WKEKYEE---FIRDSTLYLIKTALKNKY 69 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhH---H-----hhHHhHH---HHHHHHHHHHHHHHhCCC
Confidence 6899999999999999999887632 3467888888876542 1 1111222 222334456777888999
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhcCC-CEEEEEeCCH-HHHHHHHHHhhccCCCCCcHHHHHhhhcccccCCCCCCCCCCC
Q 005604 346 NFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVNKDTPGSDE 423 (688)
Q Consensus 346 nVILDaTNl~rs~R~~~l~~~a~~~-~~~vV~~~~p-eel~~R~~kR~~~~g~~Vpeevi~~m~a~fE~P~~~~~p~~~E 423 (688)
.||+|++|+.+..|.++++.++..+ .+++|+|.++ ++|++|+.+| +..++++++..|..+|+.|.. .+
T Consensus 70 ~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R----~~~~~~~~i~~l~~r~e~p~~------~~ 139 (249)
T TIGR03574 70 SVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIER----GEKIPNEVIKDMYEKFDEPGT------KY 139 (249)
T ss_pred eEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhC----CCCCCHHHHHHHHHhhCCCCC------CC
Confidence 9999999999999998887776665 7888899887 8999999988 446789999999999998875 66
Q ss_pred CCcEEEEe
Q 005604 424 LFDQVMFV 431 (688)
Q Consensus 424 gfdeI~~~ 431 (688)
.|+...++
T Consensus 140 ~wd~~~~~ 147 (249)
T TIGR03574 140 SWDLPDLT 147 (249)
T ss_pred CccCceEE
Confidence 77765544
No 11
>COG4639 Predicted kinase [General function prediction only]
Probab=99.69 E-value=2.6e-16 Score=150.32 Aligned_cols=144 Identities=24% Similarity=0.282 Sum_probs=105.4
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhc-CCccccCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKV-PGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP 344 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i-~G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL~~G 344 (688)
..|++|+|+|||||||||++.... ..+|+.|++|..++. .++. .....|+.+ .+.+..+++..+.+|
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n~~~-----~~~lsld~~r~~lg~~~~~e---~sqk~~~~~----~~~l~~~l~qrl~~G 69 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKENFLQ-----NYVLSLDDLRLLLGVSASKE---NSQKNDELV----WDILYKQLEQRLRRG 69 (168)
T ss_pred ceEEEEecCCCCchhHHHHHhCCC-----cceecHHHHHHHhhhchhhh---hccccHHHH----HHHHHHHHHHHHHcC
Confidence 469999999999999999998765 357888998886542 2211 112222222 222334556678899
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHhcCC-CEEEEEeCCH-HHHHHHHHHhhccCCCCCcHHHHHhhhcccccCCCCCCCCCC
Q 005604 345 RNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVNKDTPGSD 422 (688)
Q Consensus 345 ~nVILDaTNl~rs~R~~~l~~~a~~~-~~~vV~~~~p-eel~~R~~kR~~~~g~~Vpeevi~~m~a~fE~P~~~~~p~~~ 422 (688)
+..||||||+.++.|++++.++..++ ...+|+|++| ++|.+||+.| .+.||++||.+|...-..+. +.
T Consensus 70 k~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~----~Rqv~~~VI~r~~r~~~~~l------~~ 139 (168)
T COG4639 70 KFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLR----ERQVPEEVIPRMLRETIDLL------EK 139 (168)
T ss_pred CeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhcc----chhCCHHHHHHHHHHHHhhc------cC
Confidence 99999999999999999888877776 5566789998 8999999977 56899999999997722222 36
Q ss_pred CCCcEEEEe
Q 005604 423 ELFDQVMFV 431 (688)
Q Consensus 423 EgfdeI~~~ 431 (688)
|+|-.+...
T Consensus 140 e~~~~~~~~ 148 (168)
T COG4639 140 EPFRYVWTL 148 (168)
T ss_pred CCeEEEEec
Confidence 777665544
No 12
>KOG3953 consensus SOCS box protein SSB-1, contains SPRY domain [General function prediction only]
Probab=99.64 E-value=2.4e-15 Score=150.77 Aligned_cols=162 Identities=24% Similarity=0.362 Sum_probs=131.6
Q ss_pred CCceecCcCCCCCCeEEcCCC-ceEeecCCCCccceeeeeeeeeeEeCcEEEEEEEEEecCCCCCCCCCCCCCCcEEEEE
Q 005604 41 KQRVVLNPADCDLDFDIEDNG-LKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGT 119 (688)
Q Consensus 41 ~~~v~Ls~~D~~~~l~Is~dg-l~v~~~~~~g~~~~w~~vRAn~gv~~Gk~YfEV~I~~~~~~~~~~t~~~~~g~irVGw 119 (688)
...|.||+.|++.++.+..++ ++++-.. .+....++|+..+...|.++|||.+...+- ..+.-||+
T Consensus 24 ~~~~~w~~~drs~nv~vk~~~~~tfhrhp---vaqstd~~rGk~g~~~g~h~w~i~w~~r~~----------GT~avVGI 90 (242)
T KOG3953|consen 24 QAQHGWSPSDRSLNVFVKLPDGLTFHRHP---VAQSTDGIRGKRGYSRGRHAWEIAWPNRQR----------GTHAVVGI 90 (242)
T ss_pred HHhhccCcccccceeEEecCCcceEEecC---CccccccccceeeeccCceEEEEEecCCcc----------CCcceEEE
Confidence 444999999999999998655 7775432 245589999999999999999999987532 34667899
Q ss_pred ecCCCC------CCCCCCCCcceEEcc-CCceeeCCCc------ccCCCCCCCCCEEEEEEecCCCCccEEEEEECCeee
Q 005604 120 SRGDDP------VGKLGETEQSFGFGG-TGKFSHGGNF------LNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWL 186 (688)
Q Consensus 120 st~~~~------~~~lG~d~~SyGy~g-~G~~~~~~~~------~~YG~~f~~GDVIGC~LDl~~~p~~~I~FtkNG~~L 186 (688)
+|..++ ...||++.+||||+- +..++|++.. .+-.+.|.++|-|.|.||+++ ++++|.++|++|
T Consensus 91 aTk~Aplha~gy~aLlGs~~qswGw~l~~~~l~H~g~~~~~yp~~~~~p~~~vp~ri~viLDm~e---gtl~F~~~~e~L 167 (242)
T KOG3953|consen 91 ATKVAPLHAVGYTALLGSNSQSWGWDLGRNVLYHDGQVAGLYPALNRQPKYNVPDRILVILDMIE---GTLSFAADGEYL 167 (242)
T ss_pred EcccCchhhhHHHHHhCCCCCccceecccceeeecCccccccccccCCchhcCCceEEEEEeecc---ceEEEEECCeEE
Confidence 998763 568999999999975 5578888732 122567999999999999999 899999999999
Q ss_pred eeeeeccCCCCCcccccccccccccCCcceeEEEEc--CeEEEEEccCCCC
Q 005604 187 GTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK--NVVVVMQFSVEQG 235 (688)
Q Consensus 187 G~Af~~~~~~~~L~la~~d~~g~~~~~~lfPaVsl~--n~~v~vNFG~~~~ 235 (688)
|+||+ +| .+..|||+||.. +|+|++.+=..+.
T Consensus 168 GvAFR------gL-----------~~~~LYP~Vsav~g~~Evtm~Ylg~~~ 201 (242)
T KOG3953|consen 168 GVAFR------GL-----------KDKKLYPAVSAVWGHCEVTMKYLGTLD 201 (242)
T ss_pred eeeec------CC-----------CCCcceeeeeehhcceeEEEEEeCCcC
Confidence 99998 22 256899999986 8999998876655
No 13
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.61 E-value=7.1e-15 Score=155.39 Aligned_cols=140 Identities=22% Similarity=0.367 Sum_probs=102.9
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR 345 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL~~G~ 345 (688)
++||||+|+|||||||+|+.|++.++ .+.+|+.|.+++.+...+......+....+..+ ......+++.+++.|.
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~--~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~g~ 76 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP--KAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLV---TKAQEAAALAALKSGK 76 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC--CCEEEeccHHHHHhcCCCcccccccChHHHHHH---HHHHHHHHHHHHHcCC
Confidence 47999999999999999999999884 278999999887642111111112222111111 2233345566778999
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhcCC-CEEEEEeCCH-HHHHHHHHHhhccCCCCCcHHHHHhhhcccccC
Q 005604 346 NFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLP 413 (688)
Q Consensus 346 nVILDaTNl~rs~R~~~l~~~a~~~-~~~vV~~~~p-eel~~R~~kR~~~~g~~Vpeevi~~m~a~fE~P 413 (688)
+||||+|+..+++|..+.+.+++.+ .+.+|++.++ +++++|+.+| .++.+|+++|.+|.++++.+
T Consensus 77 ~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R---~~~~~~~~~i~~~~~~~~~~ 143 (300)
T PHA02530 77 SVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKR---GERAVPEDVLRSMFKQMKEY 143 (300)
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHcc---CcCCCCHHHHHHHHHHHHHh
Confidence 9999999999999988666666655 6777888876 8999999999 36789999999999888744
No 14
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=99.61 E-value=1.4e-15 Score=174.38 Aligned_cols=142 Identities=27% Similarity=0.451 Sum_probs=116.7
Q ss_pred eeeEeCcEEEEEEEEEecCCCCCCCCCCCCCCcEEEEEecCCC-CCCCCCCCCcceEEccC-CceeeCCCcccCCCCCCC
Q 005604 82 NVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDD-PVGKLGETEQSFGFGGT-GKFSHGGNFLNFGEKFGV 159 (688)
Q Consensus 82 n~gv~~Gk~YfEV~I~~~~~~~~~~t~~~~~g~irVGwst~~~-~~~~lG~d~~SyGy~g~-G~~~~~~~~~~YG~~f~~ 159 (688)
++.|..|+||||..... .|.+||||++..+ ++..+|.|...|+|+|. ++.||.+ ...||..|+.
T Consensus 1100 syavkagkwyfefe~vt-------------~gdmrvgwarpgc~pd~elgadd~af~fdg~k~qrwhqg-~~~~grswq~ 1165 (5019)
T KOG2243|consen 1100 SYAVKAGKWYFEFETVT-------------AGDMRVGWARPGCQPDQELGADDQAFAFDGFKAQRWHQG-NEHFGRSWQA 1165 (5019)
T ss_pred hheeeccceEEEEEEee-------------ccceeecccCCCCCcchhhCCccceeeeccchhhhhhcc-ccccccccCC
Confidence 48889999999999874 4789999999876 58899999999999885 5566654 5689999999
Q ss_pred CCEEEEEEecCCCCccEEEEEECCeeeeeeeeccCCCCCcccccccccccccCCcceeEEEEc-CeEEEEEccCCC---C
Q 005604 160 GDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK-NVVVVMQFSVEQ---G 235 (688)
Q Consensus 160 GDVIGC~LDl~~~p~~~I~FtkNG~~LG~Af~~~~~~~~L~la~~d~~g~~~~~~lfPaVsl~-n~~v~vNFG~~~---~ 235 (688)
||||||+||+++ .++-||+||+.|-.. ....|+++|.|+ ++.|.|.+||. ...-++|||.+. +
T Consensus 1166 gdvvgcmi~l~d---~sm~ftlngeili~~-----~gselaf~d~di-----~~gfipic~lg~aqigrmn~g~d~st~k 1232 (5019)
T KOG2243|consen 1166 GDVVGCMIDLDD---ASMIFTLNGEILIDD-----KGSELAFADFDI-----EDGFIPICCLGLAQIGRMNFGKDASTFK 1232 (5019)
T ss_pred CCeEEEEEeccc---ceEEEEEcCeEEEcC-----CCCeeeeccccc-----cCCceeeeehhhHhhcccccCCccccee
Confidence 999999999999 799999999988532 222477777775 57899999998 778899999874 2
Q ss_pred ----CCCccCchhhhhhcc
Q 005604 236 ----LIPVEGYKSWVSALD 250 (688)
Q Consensus 236 ----~~p~~gf~p~~~a~~ 250 (688)
|-.++||.||+-++.
T Consensus 1233 ~~ticglqeg~epfavn~n 1251 (5019)
T KOG2243|consen 1233 FFTICGLQEGFEPFAVNMN 1251 (5019)
T ss_pred eeeeecccccCccceeccc
Confidence 455899999986654
No 15
>COG0645 Predicted kinase [General function prediction only]
Probab=99.60 E-value=2.2e-14 Score=139.28 Aligned_cols=140 Identities=19% Similarity=0.138 Sum_probs=107.0
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCc--ccc---CCChHHHHHHHHHHHHHHHHHHHHHh
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGL--LRK---HNYSERFQCLMGRANAIFDVLLSRAS 341 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~--~r~---~~y~~~~e~l~~~a~~~l~~lie~aL 341 (688)
++++|+|+|||||||+|+.|.+.++ +++|.+|+||+.| +|. .+. ..|... +.+.+...+....+.+|
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lg---A~~lrsD~irk~L--~g~p~~~r~~~g~ys~~---~~~~vy~~l~~~A~l~l 73 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLG---AIRLRSDVIRKRL--FGVPEETRGPAGLYSPA---ATAAVYDELLGRAELLL 73 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcC---ceEEehHHHHHHh--cCCcccccCCCCCCcHH---HHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999998 7999999999986 442 111 123332 23334444445666778
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHhcCC-CEEEEEeCCH-HHHHHHHHHhhccCCCCCcHHHHHhhhcccccCCC
Q 005604 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVN 415 (688)
Q Consensus 342 ~~G~nVILDaTNl~rs~R~~~l~~~a~~~-~~~vV~~~~p-eel~~R~~kR~~~~g~~Vpeevi~~m~a~fE~P~~ 415 (688)
+.|.+||+|+|+.++.+|....+.++..+ .+.+|.|+++ +.+..|+..|.. +..+....++..+...++....
T Consensus 74 ~~G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~-d~sDA~~~il~~q~~~~~~~~~ 148 (170)
T COG0645 74 SSGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKG-DASDATFDILRVQLAEDEPWTE 148 (170)
T ss_pred hCCCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCC-CcccchHHHHHHHHhhhCCccc
Confidence 99999999999999999998777666655 7888899998 799999999952 1234456788888888886554
No 16
>KOG4030 consensus Uncharacterized conserved protein, contains SPRY domain [Function unknown]
Probab=99.59 E-value=3.7e-14 Score=133.79 Aligned_cols=158 Identities=22% Similarity=0.292 Sum_probs=130.4
Q ss_pred CceecCcCCCCCCeEEcCCCceEeecCCCCccceeeeeeeeeeEeCcEEEEEEEEEecCCCCCCCCCCCCCCcEEEEEec
Q 005604 42 QRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSR 121 (688)
Q Consensus 42 ~~v~Ls~~D~~~~l~Is~dgl~v~~~~~~g~~~~w~~vRAn~gv~~Gk~YfEV~I~~~~~~~~~~t~~~~~g~irVGwst 121 (688)
..|.||......++.|-+++++++. .+++-|+.++...|-||||||.. .|.|.||.++
T Consensus 27 P~V~LD~~hMG~dVvilk~g~RicG---------tGG~lAtaPlvQnKsYFevkiQ~-------------tG~WgiGlat 84 (197)
T KOG4030|consen 27 PTVRLDVGHMGKDVVILKEGERICG---------TGGALATAPLVQNKSYFEVKIQQ-------------TGTWGIGLAT 84 (197)
T ss_pred CcEEeehhccCCcEEEEecCcEEec---------cCceeeeeeeecccceEEEEEee-------------cceeeeeeee
Confidence 6699999999999999999999875 47899999999999999999985 4889999999
Q ss_pred CCCC--CCCCCCCCcceEEccCCceeeCCCcc-cCCC--CCCCCCEEEEEEecCCCCccEEEEEECCeeeeeeeeccCCC
Q 005604 122 GDDP--VGKLGETEQSFGFGGTGKFSHGGNFL-NFGE--KFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGS 196 (688)
Q Consensus 122 ~~~~--~~~lG~d~~SyGy~g~G~~~~~~~~~-~YG~--~f~~GDVIGC~LDl~~~p~~~I~FtkNG~~LG~Af~~~~~~ 196 (688)
++++ ..+.|-|.+||+.+.+|...|++... .--. --.+|||||+..|. .++.|+.||+.+-..++.
T Consensus 85 ~q~~l~~~p~g~d~~sw~~r~dga~~hnnee~~r~pa~~~p~EGDvVGvayDH-----VELnfY~NGKn~e~p~~g---- 155 (197)
T KOG4030|consen 85 KQSPLDKVPGGCDEKSWGIRDDGAIAHNNEEVARMPATVFPEEGDVVGVAYDH-----VELNFYVNGKNVEDPITG---- 155 (197)
T ss_pred ccCccccCCCCCcceeEEEccCCchhcccHHHhcCccccCCccCcEEEEEeee-----EEEEEEEcCceecccccc----
Confidence 8864 56789999999999999999987653 1111 24899999999997 478999999999887751
Q ss_pred CCcccccccccccccCCcceeEEEEc-CeEEEEEccCCCCCCCccCchhh
Q 005604 197 NGLGVVDSAVKERQCESAVFPHILLK-NVVVVMQFSVEQGLIPVEGYKSW 245 (688)
Q Consensus 197 ~~L~la~~d~~g~~~~~~lfPaVsl~-n~~v~vNFG~~~~~~p~~gf~p~ 245 (688)
..+++||.|.+. ++-+.+.|- ++..-||.||...
T Consensus 156 --------------vRG~vyPvvYVddsAILD~~f~-nF~h~PPpGFe~I 190 (197)
T KOG4030|consen 156 --------------VRGPVYPVVYVDDSAILDLKFK-NFTHAPPPGFEEI 190 (197)
T ss_pred --------------cccceeeEEEeCCceEEEEEec-ccccCCCCChhhe
Confidence 146999999998 677777774 3455677787643
No 17
>PRK06762 hypothetical protein; Provisional
Probab=99.56 E-value=6.6e-14 Score=135.50 Aligned_cols=134 Identities=16% Similarity=0.135 Sum_probs=96.6
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR 345 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL~~G~ 345 (688)
+.+|+|+|+|||||||+|+.|++.++. .+++|+.|.++..+. +... ..-...++ .+..+++.++..|.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~-~~~~i~~D~~r~~l~--~~~~-~~~~~~~~--------~~~~~~~~~~~~g~ 69 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGR-GTLLVSQDVVRRDML--RVKD-GPGNLSID--------LIEQLVRYGLGHCE 69 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC-CeEEecHHHHHHHhc--cccC-CCCCcCHH--------HHHHHHHHHHhCCC
Confidence 679999999999999999999998852 377889999887652 1100 00000111 12234445677899
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhc-CC-CEEEEEeCCH-HHHHHHHHHhhccCCCCCcHHHHHhhhcccccCC
Q 005604 346 NFIIDQTNVFKSARKRKLRLFVN-FR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPV 414 (688)
Q Consensus 346 nVILDaTNl~rs~R~~~l~~~a~-~~-~~~vV~~~~p-eel~~R~~kR~~~~g~~Vpeevi~~m~a~fE~P~ 414 (688)
+||+|+++.....|.. ++.+++ .. ++.+|++++| ++|++|+.+|.. .+.++++.++++++.++.+.
T Consensus 70 ~vild~~~~~~~~~~~-~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~--~~~~~~~~l~~~~~~~~~~~ 138 (166)
T PRK06762 70 FVILEGILNSDRYGPM-LKELIHLFRGNAYTYYFDLSFEETLRRHSTRPK--SHEFGEDDMRRWWNPHDTLG 138 (166)
T ss_pred EEEEchhhccHhHHHH-HHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccc--cccCCHHHHHHHHhhcCCcC
Confidence 9999999877776764 454444 44 6788899887 899999999953 45688999999998888553
No 18
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=99.52 E-value=4.5e-14 Score=141.72 Aligned_cols=153 Identities=20% Similarity=0.226 Sum_probs=116.3
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCCC---ceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHPE---KRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRT 343 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~~---k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL~~ 343 (688)
-||++||+|.|||||.|+.|.+.+.+ |..++|..|+. + |..+...|.+.- -.+.++..|+..+++-|.+
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~des---l---g~~~ns~y~~s~--~EK~lRg~L~S~v~R~Lsk 73 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDES---L---GIEKNSNYGDSQ--AEKALRGKLRSAVDRSLSK 73 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhh---c---CCCCcccccccH--HHHHHHHHHHHHHHhhccc
Confidence 38999999999999999999766543 32556655642 3 322222343321 1233455677788889999
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhcCC-CEEEEEeCCH-HHHHHHHHHhhccCCCCCcHHHHHhhhcccccCCCCCCCCC
Q 005604 344 PRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVNKDTPGS 421 (688)
Q Consensus 344 G~nVILDaTNl~rs~R~~~l~~~a~~~-~~~vV~~~~p-eel~~R~~kR~~~~g~~Vpeevi~~m~a~fE~P~~~~~p~~ 421 (688)
+..||+|+.|+.+..|.++++..+... .+|+|++.+| |+|.++|..|...+....++++++.+..+||.|.-
T Consensus 74 ~~iVI~DslNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~~~p~e~gy~~e~le~L~~RyEeP~s------ 147 (281)
T KOG3062|consen 74 GDIVIVDSLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWNSEREDPGEDGYDDELLEALVQRYEEPNS------ 147 (281)
T ss_pred CcEEEEecccccccceeeeeeehhccceeEEEEEecCCHHHHHHhcccCCCCCCCCCCHHHHHHHHHHhhCCCc------
Confidence 999999999999999999888776654 7899999888 89999999887554445789999999999999885
Q ss_pred CCCCcEEEEecc
Q 005604 422 DELFDQVMFVEL 433 (688)
Q Consensus 422 ~EgfdeI~~~el 433 (688)
.+.||..+|.-+
T Consensus 148 ~NRWDsPLf~ll 159 (281)
T KOG3062|consen 148 RNRWDSPLFTLL 159 (281)
T ss_pred cccccCcceEEe
Confidence 899999998743
No 19
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=99.49 E-value=2.6e-13 Score=146.54 Aligned_cols=88 Identities=17% Similarity=0.270 Sum_probs=75.7
Q ss_pred HHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHHhcCC-CEEEEEeCCH-HHHHHHHHHhhccCCCCCcHHHHHhhhccccc
Q 005604 335 VLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVL 412 (688)
Q Consensus 335 ~lie~aL~~G~nVILDaTNl~rs~R~~~l~~~a~~~-~~~vV~~~~p-eel~~R~~kR~~~~g~~Vpeevi~~m~a~fE~ 412 (688)
+++..++.++..||||++|+.+++|++++++++.+. .+++|+|++| ++|++||.+| +..+++++++.|..+||.
T Consensus 118 rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~V~ld~ple~~l~RN~~R----~~~v~devie~m~~r~E~ 193 (340)
T TIGR03575 118 SLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLDCPVESCLLRNKQR----PVPLPDETIQLMGRKIEK 193 (340)
T ss_pred HHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCEEEEEEeCCHHHHHHHHhcC----CCCCCHHHHHHHHHHhcC
Confidence 344455667778999999999999999888877766 8899999997 8999999999 457999999999999999
Q ss_pred CCCCCCCCCCCCCcEEEEe
Q 005604 413 PVNKDTPGSDELFDQVMFV 431 (688)
Q Consensus 413 P~~~~~p~~~EgfdeI~~~ 431 (688)
|.. +.+.||...++
T Consensus 194 P~~-----~~nrWd~pl~~ 207 (340)
T TIGR03575 194 PNP-----EKNAWEHNSLV 207 (340)
T ss_pred CCC-----CCCCCCCCeEE
Confidence 985 37899999887
No 20
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.49 E-value=3.2e-13 Score=128.41 Aligned_cols=135 Identities=17% Similarity=0.212 Sum_probs=92.8
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhh----cCCccccCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK----VPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRT 343 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~----i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL~~ 343 (688)
||+|+|+|||||||+|+.|.+.+. +.+|+.|.++..+. ..|... .... .+........ ..++..+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~---~~~i~~D~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~---~~~~~l~~~ 71 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLG---APFIDGDDLHPPANIAKMAAGIPL--NDED-RWPWLQALTD---ALLAKLASA 71 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcC---CEEEeCcccccHHHHHHHHcCCCC--Cccc-hhhHHHHHHH---HHHHHHHhC
Confidence 689999999999999999998865 67788888775311 123210 1111 1111111111 112222357
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHHhhccCCCCCcHHHHHhhhcccccCCC
Q 005604 344 PRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVN 415 (688)
Q Consensus 344 G~nVILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~kR~~~~g~~Vpeevi~~m~a~fE~P~~ 415 (688)
+.+||+|++++.+..|.. ++.++....+.+|+|.++ +++++|+..|. ++..+.+++..+.+.|+.|..
T Consensus 72 ~~~vVid~~~~~~~~r~~-~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~---~~~~~~~~~~~~~~~~~~p~~ 140 (150)
T cd02021 72 GEGVVVACSALKRIYRDI-LRGGAANPRVRFVHLDGPREVLAERLAARK---GHFMPADLLDSQFETLEPPGE 140 (150)
T ss_pred CCCEEEEeccccHHHHHH-HHhcCCCCCEEEEEEECCHHHHHHHHHhcc---cCCCCHHHHHHHHHHhcCCCC
Confidence 889999999999888876 444442226788899886 89999999995 456778999999999999885
No 21
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.41 E-value=3.4e-12 Score=125.19 Aligned_cols=121 Identities=16% Similarity=0.148 Sum_probs=82.2
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCcccc----CCChH---HH-HHHHHHHHHHHHHHH
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRK----HNYSE---RF-QCLMGRANAIFDVLL 337 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r~----~~y~~---~~-e~l~~~a~~~l~~li 337 (688)
.++|+|+|+|||||||||+.|++..+. .+++++.|.++..+. +.... ..+.. .+ +....+....+...+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~-~~~~~~~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 78 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAE-PWLHFGVDSFIEALP--LKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEAV 78 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCC-CccccCccHHHHhcC--hhhcccccccccCccCCcccchHHHHHHHHHHHHH
Confidence 469999999999999999999988652 367888898776542 10000 00000 01 123334445555667
Q ss_pred HHHhcCCCeEEEEcCCC-CHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHHhh
Q 005604 338 SRASRTPRNFIIDQTNV-FKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (688)
Q Consensus 338 e~aL~~G~nVILDaTNl-~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~kR~ 391 (688)
+.+++.|.+||+|+++. ....|. .++.+.. .++.+|+|.++ ++|++|+.+|.
T Consensus 79 ~~~l~~G~~VIvD~~~~~~~~~r~-~~~~~~~-~~~~~v~l~~~~~~l~~R~~~R~ 132 (175)
T cd00227 79 AAMARAGANVIADDVFLGRAALQD-CWRSFVG-LDVLWVGVRCPGEVAEGRETARG 132 (175)
T ss_pred HHHHhCCCcEEEeeeccCCHHHHH-HHHHhcC-CCEEEEEEECCHHHHHHHHHhcC
Confidence 77889999999999988 455554 3554443 26788888776 89999999994
No 22
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.38 E-value=1.4e-11 Score=118.92 Aligned_cols=129 Identities=19% Similarity=0.238 Sum_probs=87.5
Q ss_pred EEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHH-----HhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 005604 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE-----QMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRT 343 (688)
Q Consensus 269 IILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~-----~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL~~ 343 (688)
|+|+|++||||||+|+.|.+.++ +..|+.|.+.. .+ ..|.. ......++++ .. +.+++..++..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~---~~~v~~D~~~~~~~~~~~-~~~~~--~~~~~~~~~~-~~----~~~~~~~~l~~ 69 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG---AKFIEGDDLHPAANIEKM-SAGIP--LNDDDRWPWL-QN----LNDASTAAAAK 69 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC---CeEEeCccccChHHHHHH-HcCCC--CChhhHHHHH-HH----HHHHHHHHHhc
Confidence 57999999999999999999886 56788887531 11 12221 0111112221 11 22233345667
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhcCC-CEEEEEeCCH-HHHHHHHHHhhccCCCCCcHHHHHhhhcccccCCC
Q 005604 344 PRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVN 415 (688)
Q Consensus 344 G~nVILDaTNl~rs~R~~~l~~~a~~~-~~~vV~~~~p-eel~~R~~kR~~~~g~~Vpeevi~~m~a~fE~P~~ 415 (688)
|.++|||+|++.+..|.. ++ ..+ .+.+++|.++ +++++|+++|. ++.++.+.++.++..++.|..
T Consensus 70 ~~~~Vi~~t~~~~~~r~~-~~---~~~~~~~~i~l~~~~e~~~~R~~~R~---~~~~~~~~i~~~~~~~~~~~~ 136 (163)
T TIGR01313 70 NKVGIITCSALKRHYRDI-LR---EAEPNLHFIYLSGDKDVILERMKARK---GHFMKADMLESQFAALEEPLA 136 (163)
T ss_pred CCCEEEEecccHHHHHHH-HH---hcCCCEEEEEEeCCHHHHHHHHHhcc---CCCCCHHHHHHHHHHhCCCCC
Confidence 888899999998777764 33 333 6777888876 89999999994 445677889999888888764
No 23
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=99.32 E-value=2.5e-11 Score=124.17 Aligned_cols=146 Identities=19% Similarity=0.182 Sum_probs=90.2
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCC--ceEEEEcchHHHHHhhcCCcccc--CCChHHHHHHH-HHHHHHHHHHHHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMKVPGLLRK--HNYSERFQCLM-GRANAIFDVLLSR 339 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~--k~~vvIStD~Ir~~m~i~G~~r~--~~y~~~~e~l~-~~a~~~l~~lie~ 339 (688)
...+|+||||||+|||++|++|.+.+.. -...+++..+.|+++.-...... .....+..++. +.|..+|.++++.
T Consensus 11 ~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a~~~l~dl~~~ 90 (222)
T PF01591_consen 11 GKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIAKEALEDLIEW 90 (222)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999876542 22466777778877641110000 01112222333 3366788888887
Q ss_pred Hh-cCCCeEEEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCC---HHHHHHHHHHhhccC----CCCCcHHHHHhhhcccc
Q 005604 340 AS-RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPK---PEDLKIRSVKRFKEM----GKEVPADAVNNMLANYV 411 (688)
Q Consensus 340 aL-~~G~nVILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~---peel~~R~~kR~~~~----g~~Vpeevi~~m~a~fE 411 (688)
.. ..|...|+|+||.++++|+.+++.+.+.+ +.++++++ +++++++|.++.... ....++++++.++++++
T Consensus 91 l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~-~~vlFIEsic~D~~ii~~NI~~~~~~spDY~~~~~e~A~~Df~~RI~ 169 (222)
T PF01591_consen 91 LQEEGGQVAIFDATNSTRERRKMLVERFKEHG-IKVLFIESICDDPEIIERNIREKKQNSPDYKGMDPEEAIEDFKKRIE 169 (222)
T ss_dssp HHTS--SEEEEES---SHHHHHHHHHHHHHTT--EEEEEEEE---HHHHHHHHHHHHTTSGGGTTS-HHHHHHHHHHHHH
T ss_pred HhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcC-CcEEEEEEEeCCHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHH
Confidence 77 67889999999999999999888888765 44444433 367788887765543 23455677777666544
No 24
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=99.32 E-value=4.9e-12 Score=126.75 Aligned_cols=140 Identities=19% Similarity=0.223 Sum_probs=88.3
Q ss_pred CCcceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCcccc------CCChHHHHHHHHHHHHHHHHH
Q 005604 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRK------HNYSERFQCLMGRANAIFDVL 336 (688)
Q Consensus 263 ~~~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r~------~~y~~~~e~l~~~a~~~l~~l 336 (688)
...|.++||.|.|||||||++..+...+....+++|+.|+++..+. ...+ .... ......+......+
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p---~~~~~~~~~~~~~~---~~~~~~a~~~~~~~ 85 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHP---DYDELLKADPDEAS---ELTQKEASRLAEKL 85 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGST---THHHHHHHHCCCTH---HHHHHHHHHHHHHH
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhcc---chhhhhhhhhhhhH---HHHHHHHHHHHHHH
Confidence 3579999999999999999999999887223489999998765421 1000 0001 11223344556678
Q ss_pred HHHHhcCCCeEEEEcCCCCHHHHHHHHHHHhcCC-CEEEEEeCCH-HHHHHHHHHhhccC------CCCCcHHHHHhhhc
Q 005604 337 LSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEM------GKEVPADAVNNMLA 408 (688)
Q Consensus 337 ie~aL~~G~nVILDaTNl~rs~R~~~l~~~a~~~-~~~vV~~~~p-eel~~R~~kR~~~~------g~~Vpeevi~~m~a 408 (688)
++.++..+.+||+|.|+...+.-.++++.+++.+ .+.++++.++ +..+.|+.+|..++ |+.||++.+...+.
T Consensus 86 ~~~a~~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R~~~~~~~~g~GR~v~~~~~~~~~~ 165 (199)
T PF06414_consen 86 IEYAIENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERVRQRYEEGLQAKGIGRFVPEEKHDRAYA 165 (199)
T ss_dssp HHHHHHCT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHHHHHHC-C-TT-----HCCCHCCHH
T ss_pred HHHHHHcCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHHHHccccccCCCcCCCHHHHHHHHH
Confidence 8889999999999999988877776788888755 6777778776 78889999998777 78888766555443
No 25
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.31 E-value=4.7e-11 Score=114.24 Aligned_cols=154 Identities=21% Similarity=0.251 Sum_probs=110.8
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchH-----HHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL-----ILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSR 339 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~-----Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~ 339 (688)
-.-+|++.|..||||||+++.|.++++ +-.|..|+ -+++|+ .|.. -+..++|.|+...+.. +..
T Consensus 11 ~k~~i~vmGvsGsGKSTigk~L~~~l~---~~F~dgDd~Hp~~NveKM~-~Gip--LnD~DR~pWL~~i~~~-----~~~ 79 (191)
T KOG3354|consen 11 FKYVIVVMGVSGSGKSTIGKALSEELG---LKFIDGDDLHPPANVEKMT-QGIP--LNDDDRWPWLKKIAVE-----LRK 79 (191)
T ss_pred CceeEEEEecCCCChhhHHHHHHHHhC---CcccccccCCCHHHHHHHh-cCCC--CCcccccHHHHHHHHH-----HHH
Confidence 356999999999999999999999987 45565553 467776 4431 1345778887654432 334
Q ss_pred HhcCCCeEEEEcCCCCHHHHHHHHHH-HhcC-----C--CEEEEEeCCH-HHHHHHHHHhhccCCCCCcHHHHHhhhccc
Q 005604 340 ASRTPRNFIIDQTNVFKSARKRKLRL-FVNF-----R--KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANY 410 (688)
Q Consensus 340 aL~~G~nVILDaTNl~rs~R~~~l~~-~a~~-----~--~~~vV~~~~p-eel~~R~~kR~~~~g~~Vpeevi~~m~a~f 410 (688)
++..|+-|||-..-+.+.+|.- ++. ++.. . .+.+|++... |+++.|+.+|. +|..|.+.++.+.+.+
T Consensus 80 ~l~~~q~vVlACSaLKk~YRdI-Lr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~---gHFMp~~lleSQf~~L 155 (191)
T KOG3354|consen 80 ALASGQGVVLACSALKKKYRDI-LRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRK---GHFMPADLLESQFATL 155 (191)
T ss_pred HhhcCCeEEEEhHHHHHHHHHH-HHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcc---cccCCHHHHHHHHHhc
Confidence 4559999999999999999885 443 3311 1 4567777666 89999999994 8999999999999999
Q ss_pred ccCCCCCCCCCCCCCcEEEEeccCHHHH
Q 005604 411 VLPVNKDTPGSDELFDQVMFVELDREEA 438 (688)
Q Consensus 411 E~P~~~~~p~~~EgfdeI~~~el~~~ea 438 (688)
|+|... .+.+-.|-+...+.+++
T Consensus 156 E~p~~~-----e~div~isv~~~~~e~i 178 (191)
T KOG3354|consen 156 EAPDAD-----EEDIVTISVKTYSVEEI 178 (191)
T ss_pred cCCCCC-----ccceEEEeeccCCHHHH
Confidence 999962 33444444443444443
No 26
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.26 E-value=1.1e-10 Score=117.43 Aligned_cols=131 Identities=12% Similarity=0.134 Sum_probs=87.9
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhc-CCcc-ccC-CChHHHH---------------HHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKV-PGLL-RKH-NYSERFQ---------------CLM 326 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i-~G~~-r~~-~y~~~~e---------------~l~ 326 (688)
++.+|+++|+|||||||+|+.|++.++. ..++++|.+|+.++- .+.. ... ..-+.|+ ...
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~--~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~ 79 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAI--DIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQA 79 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCC--eEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHH
Confidence 4689999999999999999999998763 457888999988761 1110 000 0011111 111
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHHhcCC-CEEEEEeCCHHHHHHHHHHhhccCCCCCcHH
Q 005604 327 GRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKPEDLKIRSVKRFKEMGKEVPAD 401 (688)
Q Consensus 327 ~~a~~~l~~lie~aL~~G~nVILDaTNl~rs~R~~~l~~~a~~~-~~~vV~~~~peel~~R~~kR~~~~g~~Vpee 401 (688)
+.+...+..+++.++..|.+||||++++....+... .... .+.++++.+++++++|+..|....++..|.+
T Consensus 80 ~~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~----~~~~v~~i~l~v~d~e~lr~Rl~~R~~~~~~~~p~~ 151 (197)
T PRK12339 80 RAIMPGINRVIRRALLNGEDLVIESLYFHPPMIDEN----RTNNIRAFYLYIRDAELHRSRLADRINYTHKNSPGK 151 (197)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHH----HhcCeEEEEEEeCCHHHHHHHHHHHhhcccCCCcHH
Confidence 223345677788889999999999999998877531 1112 2334455667899999999976555556654
No 27
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.20 E-value=1.5e-10 Score=114.30 Aligned_cols=114 Identities=20% Similarity=0.209 Sum_probs=78.9
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCCCc--eEEEEcchHHHHHhhcCCccccCCChH--HHHHHHHHHHHHHHHHHHH
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLILEQMKVPGLLRKHNYSE--RFQCLMGRANAIFDVLLSR 339 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~~k--~~vvIStD~Ir~~m~i~G~~r~~~y~~--~~e~l~~~a~~~l~~lie~ 339 (688)
..+++|+|+|+|||||||+|+.|...+... .+++++.|.+++.+. +. ..|.. .+..+ . .+..++..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~--~~---~~~~~~~~~~~~-~----~~~~~~~~ 85 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLN--KD---LGFSEEDRKENI-R----RIGEVAKL 85 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhc--cc---cCCCHHHHHHHH-H----HHHHHHHH
Confidence 457899999999999999999998875322 267888898887653 21 12222 11111 1 12234455
Q ss_pred HhcCCCeEEEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHH
Q 005604 340 ASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSV 388 (688)
Q Consensus 340 aL~~G~nVILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~ 388 (688)
+++.|.+||+|+++..+.+|.. ++.+.....+.+|+++++ +++.+|+.
T Consensus 86 ~~~~G~~VI~d~~~~~~~~r~~-~~~~~~~~~~~~v~l~~~~e~~~~R~~ 134 (184)
T TIGR00455 86 FVRNGIIVITSFISPYRADRQM-VRELIEKGEFIEVFVDCPLEVCEQRDP 134 (184)
T ss_pred HHcCCCEEEEecCCCCHHHHHH-HHHhCcCCCeEEEEEeCCHHHHHHhCc
Confidence 6789999999999999999976 444333236788899887 78888843
No 28
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=99.17 E-value=1.1e-10 Score=112.18 Aligned_cols=112 Identities=17% Similarity=0.164 Sum_probs=75.8
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCC--ceEEEEcchHHHHHhhcCCccccCCChH-HHHHHHHHHHHHHHHHHHHHhcCC
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRASRTP 344 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~--k~~vvIStD~Ir~~m~i~G~~r~~~y~~-~~e~l~~~a~~~l~~lie~aL~~G 344 (688)
+|+|+|+|||||||+|+.|.+.+.. ..+++++.|.+++.+. +.. .+.. ....... .+..+++..++.|
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~--~~~---~~~~~~~~~~~~----~~~~~a~~l~~~G 71 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLN--KDL---GFSREDREENIR----RIAEVAKLLADAG 71 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhh--hcc---CCCcchHHHHHH----HHHHHHHHHHhCC
Confidence 5899999999999999999987631 2357788898887653 111 1211 1111111 1222344456789
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHH
Q 005604 345 RNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVK 389 (688)
Q Consensus 345 ~nVILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~k 389 (688)
.+||+|+++..+..|.++ +.+++...+.+|+|.++ ++|++|+.+
T Consensus 72 ~~VIid~~~~~~~~R~~~-~~l~~~~~~~~i~l~~~~e~~~~R~~~ 116 (149)
T cd02027 72 LIVIAAFISPYREDREAA-RKIIGGGDFLEVFVDTPLEVCEQRDPK 116 (149)
T ss_pred CEEEEccCCCCHHHHHHH-HHhcCCCCEEEEEEeCCHHHHHHhCch
Confidence 999999999999998764 44443337888999887 888888654
No 29
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.14 E-value=5.6e-10 Score=109.53 Aligned_cols=133 Identities=23% Similarity=0.301 Sum_probs=80.3
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEEcc-hHHHHHhhcCCccccCCChHHHHHHHHH----HHHHHHHHHHHHhc
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT-NLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR 342 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvISt-D~Ir~~m~i~G~~r~~~y~~~~e~l~~~----a~~~l~~lie~aL~ 342 (688)
+|+|+|+|||||||+|+.|++.++ +.+|+. |.+++++. .+. ..+...+.+++. -...+..+++.++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~---~~~is~~d~lr~~~~-~~~----~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 72 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG---FTHLSAGDLLRAEIK-SGS----ENGELIESMIKNGKIVPSEVTVKLLKNAIQ 72 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC---CeEEECChHHHHHHh-cCC----hHHHHHHHHHHCCCcCCHHHHHHHHHHHHh
Confidence 589999999999999999999987 788887 56666553 111 111111111110 00112233434432
Q ss_pred --CCCeEEEEcCCCCHHHHHHHHHHHhcC-CCEEEEEeCCH-HHHHHHHHHhhccCC-CCCcHHHHHhhhc
Q 005604 343 --TPRNFIIDQTNVFKSARKRKLRLFVNF-RKIAVVVFPKP-EDLKIRSVKRFKEMG-KEVPADAVNNMLA 408 (688)
Q Consensus 343 --~G~nVILDaTNl~rs~R~~~l~~~a~~-~~~~vV~~~~p-eel~~R~~kR~~~~g-~~Vpeevi~~m~a 408 (688)
.++.||||....+.+++..+.+.+... ..-.+++++++ +++++|+.+|....+ .+-..+.+.+..+
T Consensus 73 ~~~~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~ 143 (183)
T TIGR01359 73 ADGSKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSSGRVDDNIESIKKRFR 143 (183)
T ss_pred ccCCCcEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccCCCCCCCHHHHHHHHH
Confidence 267899999988888777655444332 22246788886 789999999854211 1223455555443
No 30
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.13 E-value=2.6e-10 Score=110.68 Aligned_cols=113 Identities=19% Similarity=0.200 Sum_probs=74.0
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCC--ceEEEEcchHHHHHhhcCCccccCCCh--HHHHHHHHHHHHHHHHHHHHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMKVPGLLRKHNYS--ERFQCLMGRANAIFDVLLSRA 340 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~--k~~vvIStD~Ir~~m~i~G~~r~~~y~--~~~e~l~~~a~~~l~~lie~a 340 (688)
++.+|+|+|+|||||||+|++|.+.+.. ...++|..|.+|..+. .++ .|. ++++.+ . .+..+...+
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~--~dl---~fs~~dR~e~~-r----r~~~~A~ll 70 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLN--ADL---GFSKEDREENI-R----RIAEVAKLL 70 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTT--TT-----SSHHHHHHHH-H----HHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccC--CCC---CCCHHHHHHHH-H----HHHHHHHHH
Confidence 3689999999999999999999877642 3477888888775432 111 232 222222 1 233455556
Q ss_pred hcCCCeEEEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHH
Q 005604 341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSV 388 (688)
Q Consensus 341 L~~G~nVILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~ 388 (688)
.++|..||++....+++.|...-+.+.. .++..||+++| ++|++|..
T Consensus 71 ~~~G~ivIva~isp~~~~R~~~R~~~~~-~~f~eVyv~~~~e~~~~RD~ 118 (156)
T PF01583_consen 71 ADQGIIVIVAFISPYREDREWARELIPN-ERFIEVYVDCPLEVCRKRDP 118 (156)
T ss_dssp HHTTSEEEEE----SHHHHHHHHHHHHT-TEEEEEEEES-HHHHHHHTT
T ss_pred HhCCCeEEEeeccCchHHHHHHHHhCCc-CceEEEEeCCCHHHHHHhCc
Confidence 7899999999999999999874444443 26888999998 89998864
No 31
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.10 E-value=1.9e-09 Score=105.12 Aligned_cols=149 Identities=15% Similarity=0.189 Sum_probs=90.3
Q ss_pred eccCCCChhHHHHHHHhhCCCceEEEEcchHHH--HHhh--cCCccccCCChH--HHHHHHHHHHHHHHHHHHHHhcCCC
Q 005604 272 VGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL--EQMK--VPGLLRKHNYSE--RFQCLMGRANAIFDVLLSRASRTPR 345 (688)
Q Consensus 272 vGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir--~~m~--i~G~~r~~~y~~--~~e~l~~~a~~~l~~lie~aL~~G~ 345 (688)
+|++||||||+++.|++.++ .+.|..|.+. +..+ ..|. .+.+ .+.++ ....... ...+...+.
T Consensus 1 ~G~sGsGKSTla~~la~~l~---~~~~~~d~~~~~~~~~~~~~g~----~~~~~~~~~~~-~~~~~~~---~~~~~~~~~ 69 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLH---AAFLDGDFLHPRRNIEKMASGE----PLNDDDRKPWL-QALNDAA---FAMQRTNKV 69 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhC---CeEEeCccCCchhhhccccCCC----CCChhhHHHHH-HHHHHHH---HHHHHcCCc
Confidence 59999999999999999886 5777777631 1110 1232 1222 11111 1111111 111223455
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhcCC-CEEEEEeCCH-HHHHHHHHHhhccCCCCCcHHHHHhhhcccccCCCCCCCCCCC
Q 005604 346 NFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVNKDTPGSDE 423 (688)
Q Consensus 346 nVILDaTNl~rs~R~~~l~~~a~~~-~~~vV~~~~p-eel~~R~~kR~~~~g~~Vpeevi~~m~a~fE~P~~~~~p~~~E 423 (688)
.||+ +|++.+..|.. + ++.. .+.+|+|+++ ++|++|+.+|. ++..+.+++..+.+.+|+|.. .|
T Consensus 70 ~viv-~s~~~~~~r~~-~---~~~~~~~~~v~l~a~~~~l~~Rl~~R~---~~~a~~~vl~~Q~~~~ep~~~------~e 135 (163)
T PRK11545 70 SLIV-CSALKKHYRDL-L---REGNPNLSFIYLKGDFDVIESRLKARK---GHFFKTQMLVTQFETLQEPGA------DE 135 (163)
T ss_pred eEEE-EecchHHHHHH-H---HccCCCEEEEEEECCHHHHHHHHHhcc---CCCCCHHHHHHHHHHcCCCCC------CC
Confidence 5666 89998777754 2 2233 7899999987 89999999996 334578999999999998874 34
Q ss_pred CCcEEEEe-ccC-HHHHHHHHHHHH
Q 005604 424 LFDQVMFV-ELD-REEAQRHLDEMK 446 (688)
Q Consensus 424 gfdeI~~~-el~-~~ea~~li~~~~ 446 (688)
. +.+.+. +.+ .+.+..++..++
T Consensus 136 ~-~~~~id~~~~~~~~~~~~~~~~~ 159 (163)
T PRK11545 136 T-DVLVVDIDQPLEGVVASTIEVIK 159 (163)
T ss_pred C-CEEEEeCCCCHHHHHHHHHHHHH
Confidence 2 333333 233 344555555543
No 32
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.09 E-value=1.7e-09 Score=103.11 Aligned_cols=127 Identities=19% Similarity=0.215 Sum_probs=94.4
Q ss_pred eccCCCChhHHHHHHHhhCCCceEEEEcchH-----HHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 005604 272 VGLPASGKTTWAEKWVKDHPEKRYILLGTNL-----ILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRN 346 (688)
Q Consensus 272 vGLPGSGKST~Ar~L~~~~~~k~~vvIStD~-----Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL~~G~n 346 (688)
+|..||||||+++.|++.+. +..|.-|+ .+++|. .|.. -+..++|.|+.... ..+....+.++.
T Consensus 1 MGVsG~GKStvg~~lA~~lg---~~fidGDdlHp~aNi~KM~-~GiP--L~DdDR~pWL~~l~-----~~~~~~~~~~~~ 69 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLG---AKFIDGDDLHPPANIEKMS-AGIP--LNDDDRWPWLEALG-----DAAASLAQKNKH 69 (161)
T ss_pred CCCCccCHHHHHHHHHHHcC---CceecccccCCHHHHHHHh-CCCC--CCcchhhHHHHHHH-----HHHHHhhcCCCc
Confidence 48999999999999999998 55565553 356665 4431 12346676654322 233334567778
Q ss_pred EEEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHHhhccCCCCCcHHHHHhhhcccccCCC
Q 005604 347 FIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVN 415 (688)
Q Consensus 347 VILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~kR~~~~g~~Vpeevi~~m~a~fE~P~~ 415 (688)
+||-..-+++++|.. ++... ..+.+||++-+ +.+++|++.|. ||..|.+.++.+.+.+|.|..
T Consensus 70 ~vi~CSALKr~YRD~-LR~~~--~~~~Fv~L~g~~~~i~~Rm~~R~---gHFM~~~ll~SQfa~LE~P~~ 133 (161)
T COG3265 70 VVIACSALKRSYRDL-LREAN--PGLRFVYLDGDFDLILERMKARK---GHFMPASLLDSQFATLEEPGA 133 (161)
T ss_pred eEEecHHHHHHHHHH-HhccC--CCeEEEEecCCHHHHHHHHHhcc---cCCCCHHHHHHHHHHhcCCCC
Confidence 999999999999986 44322 25899999876 89999999994 999999999999999999985
No 33
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=99.07 E-value=5.3e-11 Score=137.90 Aligned_cols=150 Identities=24% Similarity=0.343 Sum_probs=111.7
Q ss_pred eeeeeeee--eeEeCc-----EEEEEEEEEecCCCCCCCCCCCCCCcEEEEEecCCC-----------CCCCCCCCCcce
Q 005604 75 CWSGARAN--VGINGG-----KYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDD-----------PVGKLGETEQSF 136 (688)
Q Consensus 75 ~w~~vRAn--~gv~~G-----k~YfEV~I~~~~~~~~~~t~~~~~g~irVGwst~~~-----------~~~~lG~d~~Sy 136 (688)
..+++|.| .||.+| |||||..|+...|. .+-+..++||||+..+. ....+|+|-+||
T Consensus 657 ~vss~rpniflgvaegsaqykkwy~el~id~~dpf-----~tae~thlrvgwass~gyap~pggge~wggngvgddl~sy 731 (5019)
T KOG2243|consen 657 DVSSIRPNIFLGVAEGSAQYKKWYFELIIDHTDPF-----LTAEATHLRVGWASSEGYAPCPGGGEEWGGNGVGDDLFSY 731 (5019)
T ss_pred hhhhcCCceeEeeccchHHHHHHHHHHhhhcCCcc-----eecccceeeeeeeccCCCCCCCCCcccccCCCccchhhhc
Confidence 46778888 466666 89999999865442 12246789999987553 145899999999
Q ss_pred EEccC----CceeeCCCcccCCCCCCCCCEEEEEEecCCCCccEEEEEECCeeeeeeeeccCCCCCcccccccccccccC
Q 005604 137 GFGGT----GKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCE 212 (688)
Q Consensus 137 Gy~g~----G~~~~~~~~~~YG~~f~~GDVIGC~LDl~~~p~~~I~FtkNG~~LG~Af~~~~~~~~L~la~~d~~g~~~~ 212 (688)
||+|- |.+. +.....--.-....|||.|+||+-. ..|+|..||+.+--.|+..+ .+
T Consensus 732 gfdglhlwsg~i~-r~vas~nqhllrsddvisccldl~~---psisfringqpvqgmfenfn----------------~d 791 (5019)
T KOG2243|consen 732 GFDGLHLWSGCIA-RAVASPNQHLLRSDDVISCCLDLGA---PSISFRINGQPVQGMFENFN----------------ID 791 (5019)
T ss_pred CCCcchhhcccch-hhhcChhhhhhcccchhhhhhhcCC---CceEEEECCccchhHHhcCC----------------Cc
Confidence 99763 3221 1111122234788999999999987 68999999998876776321 25
Q ss_pred CcceeEEEEc-CeEEEEEccCC---CCCCCccCchhhhhhc
Q 005604 213 SAVFPHILLK-NVVVVMQFSVE---QGLIPVEGYKSWVSAL 249 (688)
Q Consensus 213 ~~lfPaVsl~-n~~v~vNFG~~---~~~~p~~gf~p~~~a~ 249 (688)
+-|||.+++. +..|++-+|.. +++.||.||.|+..++
T Consensus 792 glffpv~sfsagikvrfllggrhgefkflpp~gyapcyea~ 832 (5019)
T KOG2243|consen 792 GLFFPVMSFSAGIKVRFLLGGRHGEFKFLPPPGYAPCYEAL 832 (5019)
T ss_pred ceeeeeEeeccCeEEEEEecccccceeecCCCCCccHHHHh
Confidence 7899999998 99999999985 5788999999998764
No 34
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.06 E-value=4.8e-09 Score=103.76 Aligned_cols=131 Identities=17% Similarity=0.205 Sum_probs=84.2
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHH-----HHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHH
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL-----EQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRA 340 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir-----~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~a 340 (688)
.++++++|++||||||+++.++..+. ...|..|.+. +++. .|..........|-.. +......+
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~---~~~i~gd~~~~~~~~r~~~-~g~~~~~~~~~~~~~~---~~~~~~~~---- 71 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS---AKFIDGDDLHPAKNIDKMS-QGIPLTDEDRLPWLER---LNDASYSL---- 71 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC---CEEECCcccCCHhHHHHHh-cCCCCCcccchHHHHH---HHHHHHHH----
Confidence 57899999999999999999998876 4567776531 1111 2221000000012111 11111111
Q ss_pred hcC-CCeEEEEcCCCCHHHHHHHHHHHhcCC-CEEEEEeCCH-HHHHHHHHHhhccCCCCCcHHHHHhhhcccccCCC
Q 005604 341 SRT-PRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVN 415 (688)
Q Consensus 341 L~~-G~nVILDaTNl~rs~R~~~l~~~a~~~-~~~vV~~~~p-eel~~R~~kR~~~~g~~Vpeevi~~m~a~fE~P~~ 415 (688)
+.. ...+|+ ++++.+..|.. + .+.. .+.+|+|+++ +++++|+.+|. ++.++.+++..+.+.+|+|..
T Consensus 72 ~~~~~~g~iv-~s~~~~~~R~~-~---r~~~~~~~~v~l~a~~~~l~~Rl~~R~---~~~~~~~vl~~Q~~~~e~~~~ 141 (176)
T PRK09825 72 YKKNETGFIV-CSSLKKQYRDI-L---RKSSPNVHFLWLDGDYETILARMQRRA---GHFMPPDLLQSQFDALERPCA 141 (176)
T ss_pred HhcCCCEEEE-EEecCHHHHHH-H---HhhCCCEEEEEEeCCHHHHHHHHhccc---CCCCCHHHHHHHHHHcCCCCC
Confidence 222 334455 88998888775 2 2222 6889999986 89999999995 467899999999999997764
No 35
>PRK14527 adenylate kinase; Provisional
Probab=99.06 E-value=1.6e-09 Score=107.75 Aligned_cols=140 Identities=24% Similarity=0.326 Sum_probs=84.2
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHH-HhhcCCccccCCChHHHHHHHHH----HHHHHHHHHH
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE-QMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLS 338 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~-~m~i~G~~r~~~y~~~~e~l~~~----a~~~l~~lie 338 (688)
+++++|+++|+|||||||+|+.|++.++ +.+|+.|++.+ .+. .+. ........++.. -...+..++.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~---~~~is~gd~~r~~~~-~~~----~~~~~~~~~~~~g~~~p~~~~~~l~~ 75 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG---LKKLSTGDILRDHVA-RGT----ELGQRAKPIMEAGDLVPDELILALIR 75 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC---CCCCCccHHHHHHHh-cCc----HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 3578999999999999999999999887 67788865544 321 111 111111111110 0112223343
Q ss_pred HHhcC--CCeEEEEcCCCCHHHHHHHHHHHhcCC-C-EEEEEeCCH-HHHHHHHHHhhccCC-CCCcHHHHHhhhcccc
Q 005604 339 RASRT--PRNFIIDQTNVFKSARKRKLRLFVNFR-K-IAVVVFPKP-EDLKIRSVKRFKEMG-KEVPADAVNNMLANYV 411 (688)
Q Consensus 339 ~aL~~--G~nVILDaTNl~rs~R~~~l~~~a~~~-~-~~vV~~~~p-eel~~R~~kR~~~~g-~~Vpeevi~~m~a~fE 411 (688)
..++. +..+|||...-+..++..+...+...+ . ..+++|+++ +++++|+.+|....+ .+..++++.+..+.|.
T Consensus 76 ~~l~~~~~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~ 154 (191)
T PRK14527 76 DELAGMEPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYR 154 (191)
T ss_pred HHHhcCCCCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHH
Confidence 33333 457999986666777665444444433 3 356788887 799999999964322 2335677766555554
No 36
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=99.05 E-value=1.6e-09 Score=116.48 Aligned_cols=153 Identities=14% Similarity=0.167 Sum_probs=117.6
Q ss_pred eecCcCCCCCCeEEcCCCceEeecCCCCccceeeeeeeeeeEeCcEEEEEEEEEecCCCCCCCCCCCCCCcEEEEEecCC
Q 005604 44 VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGD 123 (688)
Q Consensus 44 v~Ls~~D~~~~l~Is~dgl~v~~~~~~g~~~~w~~vRAn~gv~~Gk~YfEV~I~~~~~~~~~~t~~~~~g~irVGwst~~ 123 (688)
+.|++--+..++.|+.+.+++.+- ++.++.|.+..++..|.+||||+|+... ....+.||++...
T Consensus 535 fqlt~spsqrdmilsnecatlsgs-----sleyrtilgsiafskgvhywevtidrhd----------gnsdivigvaqpa 599 (699)
T KOG4367|consen 535 FQLTPSPSQRDMILSNECATLSGS-----SLEYRTILGSIAFSKGVHYWEVTIDRHD----------GNSDIVIGVAQPA 599 (699)
T ss_pred eeccCCchhhceeeecccceeccc-----ccchheeeeecccccceeEEEEEEeccC----------CCCCceEEecchh
Confidence 445666667789999998887653 4678999999999999999999999652 2456889999865
Q ss_pred C-CCCCCCCCCcceEEccCCce---eeCCCccc-CCCCCCCCCEEEEEEecCCCCccEEEEEECCeeee-eeeeccCCCC
Q 005604 124 D-PVGKLGETEQSFGFGGTGKF---SHGGNFLN-FGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLG-TAKQFDAGSN 197 (688)
Q Consensus 124 ~-~~~~lG~d~~SyGy~g~G~~---~~~~~~~~-YG~~f~~GDVIGC~LDl~~~p~~~I~FtkNG~~LG-~Af~~~~~~~ 197 (688)
. .+..||-|.++|..-.+|.. +||....+ ---....|-|||+.||++. +++.|++|.+..+ +||.
T Consensus 600 vnrnvmlgkdlhgwsmyvdgerswylhnethhnrvlggvtrgtvigvrldcdr---gtmeytvndrqddsmaft------ 670 (699)
T KOG4367|consen 600 VNRNVMLGKDLHGWSMYVDGERSWYLHNETHHNRVLGGVTRGTVIGVRLDCDR---GTMEYTVNDRQDDSMAFT------ 670 (699)
T ss_pred hhhceeecccccceeEEEcCcceeEEeccccccccccccccccEEEEEEeccC---CceEEEeccccCCceeee------
Confidence 3 37789999999997666653 24443322 2224789999999999999 8999999998554 5664
Q ss_pred CcccccccccccccCCcceeEEEEc-CeEEEEEccC
Q 005604 198 GLGVVDSAVKERQCESAVFPHILLK-NVVVVMQFSV 232 (688)
Q Consensus 198 ~L~la~~d~~g~~~~~~lfPaVsl~-n~~v~vNFG~ 232 (688)
+| .+-|||++++. |..|++.-|-
T Consensus 671 -------nm-----rglyypafsvnanssitvhtgl 694 (699)
T KOG4367|consen 671 -------NM-----RGLYYPAFSVNANSSITVHTGL 694 (699)
T ss_pred -------cc-----cceeeeeeEeccCceEEEecCC
Confidence 22 35799999998 9999988774
No 37
>PRK14532 adenylate kinase; Provisional
Probab=98.99 E-value=5.7e-09 Score=103.19 Aligned_cols=114 Identities=24% Similarity=0.313 Sum_probs=71.7
Q ss_pred EEEeccCCCChhHHHHHHHhhCCCceEEEEcchH-HHHHhhcCCccccCCChHHHHHHH--------HHHHHHHHHHHHH
Q 005604 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL-ILEQMKVPGLLRKHNYSERFQCLM--------GRANAIFDVLLSR 339 (688)
Q Consensus 269 IILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~-Ir~~m~i~G~~r~~~y~~~~e~l~--------~~a~~~l~~lie~ 339 (688)
|+|+|+|||||||+|+.|++.++ +.+|++|+ +|+++. .+. ........++ +...+.+...+.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g---~~~is~~d~lr~~~~-~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~- 73 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERG---MVQLSTGDMLRAAIA-SGS----ELGQRVKGIMDRGELVSDEIVIALIEERLP- 73 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC---CeEEeCcHHHHHHHH-cCC----HHHHHHHHHHHCCCccCHHHHHHHHHHHHh-
Confidence 88999999999999999999887 78898855 444432 121 0011111111 011111222221
Q ss_pred HhcCCCeEEEEcCCCCHHHHHHHHHHHhcCC-CE-EEEEeCCH-HHHHHHHHHhh
Q 005604 340 ASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KI-AVVVFPKP-EDLKIRSVKRF 391 (688)
Q Consensus 340 aL~~G~nVILDaTNl~rs~R~~~l~~~a~~~-~~-~vV~~~~p-eel~~R~~kR~ 391 (688)
.+..+..||||+...+..++..+.+.+...+ .. .+|+|+++ +++++|+.+|.
T Consensus 74 ~~~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~ 128 (188)
T PRK14532 74 EAEAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRF 128 (188)
T ss_pred CcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCc
Confidence 1245778999998888888876545555443 22 56788886 78999999884
No 38
>PRK14531 adenylate kinase; Provisional
Probab=98.99 E-value=2.4e-09 Score=106.06 Aligned_cols=132 Identities=20% Similarity=0.293 Sum_probs=79.2
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEEcc-hHHHHHhhcCCccccCCChHHHHHHHHH----HHHHHHHHHHHHhc
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT-NLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR 342 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvISt-D~Ir~~m~i~G~~r~~~y~~~~e~l~~~----a~~~l~~lie~aL~ 342 (688)
-|+++|+|||||||+++.|++.++ +.+|+. |.+|+++. .+. ........++.. ....+..++...+.
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g---~~~is~gd~lr~~~~-~~~----~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~ 75 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHG---LRHLSTGDLLRSEVA-AGS----ALGQEAEAVMNRGELVSDALVLAIVESQLK 75 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CCeEecccHHHHHHh-cCC----HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 488999999999999999999987 678887 55666542 111 111111111100 00111122222222
Q ss_pred --CCCeEEEEcCCCCHHHHHHHHHHHhcCC-CE-EEEEeCCH-HHHHHHHHHhhccCCCCCcHHHHHhhhccc
Q 005604 343 --TPRNFIIDQTNVFKSARKRKLRLFVNFR-KI-AVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANY 410 (688)
Q Consensus 343 --~G~nVILDaTNl~rs~R~~~l~~~a~~~-~~-~vV~~~~p-eel~~R~~kR~~~~g~~Vpeevi~~m~a~f 410 (688)
.+..+|||....+..++..+-..+.+.+ .+ .+++++++ +++++|+..|.. .+-.++++.+-.+.|
T Consensus 76 ~~~~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r---~dD~~e~i~~Rl~~y 145 (183)
T PRK14531 76 ALNSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGR---ADDNEAVIRNRLEVY 145 (183)
T ss_pred hccCCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCC---CCCCHHHHHHHHHHH
Confidence 3567999999888887776444444443 33 46778886 799999999842 234456665544444
No 39
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.97 E-value=3.2e-09 Score=103.85 Aligned_cols=112 Identities=18% Similarity=0.261 Sum_probs=73.2
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCCC--ceEEEEcchHHHHHhhcCCccccCCChH-HHHHHHHHHHHHHHHHHHHH
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRA 340 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~~--k~~vvIStD~Ir~~m~i~G~~r~~~y~~-~~e~l~~~a~~~l~~lie~a 340 (688)
+.+++|+|+|+|||||||+|+.|+..+.. ..+.+|+.|.+++.+. .+. .+.. ..+....+ +..+.+..
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~-~~~----~~~~~~r~~~~~~----~~~~a~~~ 72 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLS-KGL----GFSKEDRDTNIRR----IGFVANLL 72 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHh-cCC----CCChhhHHHHHHH----HHHHHHHH
Confidence 35789999999999999999999877642 2367788898877653 121 1111 11111111 11222333
Q ss_pred hcCCCeEEEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHH
Q 005604 341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRS 387 (688)
Q Consensus 341 L~~G~nVILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~ 387 (688)
+..|.+||+|+++..+..|++ ++.+. ..+.+|+++++ +++.+|+
T Consensus 73 ~~~g~~vi~~~~~~~~~~~~~-l~~~~--~~~~~v~l~~~~e~~~~R~ 117 (175)
T PRK00889 73 TRHGVIVLVSAISPYRETREE-VRANI--GNFLEVFVDAPLEVCEQRD 117 (175)
T ss_pred HhCCCEEEEecCCCCHHHHHH-HHhhc--CCeEEEEEcCCHHHHHHhC
Confidence 568999999999887777765 33222 25778899887 7888885
No 40
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.96 E-value=9.8e-09 Score=118.51 Aligned_cols=116 Identities=16% Similarity=0.222 Sum_probs=83.7
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCCC-c--eEEEEcchHHHHHhhcCCccccCCChHH-HHHHHHHHHHHHHHHHHH
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE-K--RYILLGTNLILEQMKVPGLLRKHNYSER-FQCLMGRANAIFDVLLSR 339 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~~-k--~~vvIStD~Ir~~m~i~G~~r~~~y~~~-~e~l~~~a~~~l~~lie~ 339 (688)
+++.+|+|+|+|||||||+|+.|++.+.. . .+..+..|.+|+.| .|. ..|... .+....+ +..+...
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l--~ge---~~f~~~er~~~~~~----l~~~a~~ 460 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHL--SSE---LGFSKEDRDLNILR----IGFVASE 460 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhc--cCC---CCCCHHHHHHHHHH----HHHHHHH
Confidence 45789999999999999999999988763 1 25788899988765 332 133332 1111111 2223344
Q ss_pred HhcCCCeEEEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHH
Q 005604 340 ASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSV 388 (688)
Q Consensus 340 aL~~G~nVILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~ 388 (688)
.++.|..||+|+++...+.|..+.+.+++...+.+|+|.++ ++|.+|+.
T Consensus 461 v~~~Gg~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~r 510 (568)
T PRK05537 461 ITKNGGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRDR 510 (568)
T ss_pred HHhCCCEEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhcc
Confidence 57899999999999999999987777766555678899887 89988864
No 41
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.96 E-value=5.6e-09 Score=103.41 Aligned_cols=146 Identities=16% Similarity=0.237 Sum_probs=92.7
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccc--cCCC--hHHHHHHHHH------------
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLR--KHNY--SERFQCLMGR------------ 328 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r--~~~y--~~~~e~l~~~------------ 328 (688)
.+.|++++|++|+||||++++|.++.. -.++||..+ +..+ .|... ++.| .++++.++++
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~--l~~SVS~TT--R~pR-~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gn 77 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDK--LRFSVSATT--RKPR-PGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGN 77 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcC--eEEEEEecc--CCCC-CCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCC
Confidence 478999999999999999999998873 356777654 3333 33211 2222 2333333221
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCCH--HHHHHHHHHhhccCCCCCcHHHHHhh
Q 005604 329 ANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP--EDLKIRSVKRFKEMGKEVPADAVNNM 406 (688)
Q Consensus 329 a~~~l~~lie~aL~~G~nVILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~p--eel~~R~~kR~~~~g~~Vpeevi~~m 406 (688)
........++.+++.|++||||-..-- ... ++ .++..+..||+..| ++|++|+..| +.+..+.+-.+|
T Consensus 78 yYGT~~~~ve~~~~~G~~vildId~qG-a~q---vk--~~~p~~v~IFi~pPs~eeL~~RL~~R----gtds~e~I~~Rl 147 (191)
T COG0194 78 YYGTSREPVEQALAEGKDVILDIDVQG-ALQ---VK--KKMPNAVSIFILPPSLEELERRLKGR----GTDSEEVIARRL 147 (191)
T ss_pred cccCcHHHHHHHHhcCCeEEEEEehHH-HHH---HH--HhCCCeEEEEEcCCCHHHHHHHHHcc----CCCCHHHHHHHH
Confidence 112445567788999999999985221 111 11 22446677777555 8999999999 666556666666
Q ss_pred hc-ccccCCCCCCCCCCCCCcEEEEec
Q 005604 407 LA-NYVLPVNKDTPGSDELFDQVMFVE 432 (688)
Q Consensus 407 ~a-~fE~P~~~~~p~~~EgfdeI~~~e 432 (688)
.+ +.|+-. ...||.+++++
T Consensus 148 ~~a~~Ei~~-------~~~fdyvivNd 167 (191)
T COG0194 148 ENAKKEISH-------ADEFDYVIVND 167 (191)
T ss_pred HHHHHHHHH-------HHhCCEEEECc
Confidence 63 445544 34599999885
No 42
>PRK01184 hypothetical protein; Provisional
Probab=98.95 E-value=2.2e-08 Score=98.66 Aligned_cols=118 Identities=18% Similarity=0.161 Sum_probs=64.5
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCCCceEEEEcc-hHHHHHhhcCCccc-cCCChHHHHHHHHH-HHHHHHHHHHHHh--
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT-NLILEQMKVPGLLR-KHNYSERFQCLMGR-ANAIFDVLLSRAS-- 341 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvISt-D~Ir~~m~i~G~~r-~~~y~~~~e~l~~~-a~~~l~~lie~aL-- 341 (688)
.+|+|+|+|||||||+|+ ++++++ +.+|++ |.+|+.+...+... ...+...-..+.+. ....+..++...+
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g---~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~ 77 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMG---IPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRTVPKIRE 77 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcC---CcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHHHHHHHh
Confidence 589999999999999987 667765 667776 55666542122110 00011110011111 0011111211122
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHHhh
Q 005604 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (688)
Q Consensus 342 ~~G~nVILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~kR~ 391 (688)
..+..||+|.. ....+... ++.... ..+.+|++.++ +++.+|+.+|.
T Consensus 78 ~~~~~vvidg~-r~~~e~~~-~~~~~~-~~~~~i~v~~~~~~~~~Rl~~R~ 125 (184)
T PRK01184 78 KGDEVVVIDGV-RGDAEVEY-FRKEFP-EDFILIAIHAPPEVRFERLKKRG 125 (184)
T ss_pred cCCCcEEEeCC-CCHHHHHH-HHHhCC-cccEEEEEECCHHHHHHHHHHcC
Confidence 24678999987 34444433 332222 24567788886 78999999884
No 43
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.94 E-value=9.4e-09 Score=120.32 Aligned_cols=113 Identities=15% Similarity=0.122 Sum_probs=78.9
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC--CceEEEEcchHHHHHhhcCCccccCCChHH-HHHHHHHHHHHHHHHHHHHh
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYSER-FQCLMGRANAIFDVLLSRAS 341 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~--~k~~vvIStD~Ir~~m~i~G~~r~~~y~~~-~e~l~~~a~~~l~~lie~aL 341 (688)
.+.+|+|+|+|||||||+|+.|++.+. ...+++|+.|++|+.+ .+. ..|..+ ...... .+..+....+
T Consensus 459 ~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l--~~~---~~~~~~~r~~~~~----~l~~~a~~~~ 529 (632)
T PRK05506 459 KPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGL--NRD---LGFSDADRVENIR----RVAEVARLMA 529 (632)
T ss_pred CcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhcc--CCC---CCCCHHHHHHHHH----HHHHHHHHHH
Confidence 489999999999999999999988763 2346889999988754 221 123332 111111 1223444456
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHH
Q 005604 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRS 387 (688)
Q Consensus 342 ~~G~nVILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~ 387 (688)
+.|.+||+|+++..+..|.. ++.+.....+.+|+|+++ ++|++|+
T Consensus 530 ~~G~~Vivda~~~~~~~R~~-~r~l~~~~~~~~v~L~~~~e~~~~R~ 575 (632)
T PRK05506 530 DAGLIVLVSFISPFREEREL-ARALHGEGEFVEVFVDTPLEVCEARD 575 (632)
T ss_pred hCCCEEEEECCCCCHHHHHH-HHHhcccCCeEEEEECCCHHHHHhhC
Confidence 89999999999999999975 444333236788999887 8888885
No 44
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.93 E-value=6e-09 Score=100.55 Aligned_cols=132 Identities=16% Similarity=0.110 Sum_probs=93.3
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR 345 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL~~G~ 345 (688)
+++.||.|+.||||||+.......+. ...++|++|.|-.++. .. .++ ..-++. .+.....+..+.+.++
T Consensus 2 ~~l~IvaG~NGsGKstv~~~~~~~~~-~~~~~VN~D~iA~~i~--p~------~p~-~~~i~A-~r~ai~~i~~~I~~~~ 70 (187)
T COG4185 2 KRLDIVAGPNGSGKSTVYASTLAPLL-PGIVFVNADEIAAQIS--PD------NPT-SAAIQA-ARVAIDRIARLIDLGR 70 (187)
T ss_pred ceEEEEecCCCCCceeeeeccchhhc-CCeEEECHHHHhhhcC--CC------Cch-HHHHHH-HHHHHHHHHHHHHcCC
Confidence 57899999999999999877765543 2478899999866532 11 111 111222 2233345567789999
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhcCC-CE--EEEEeCCHHHHHHHHHHhhccCCCCCcHHHHHhhhcc
Q 005604 346 NFIIDQTNVFKSARKRKLRLFVNFR-KI--AVVVFPKPEDLKIRSVKRFKEMGKEVPADAVNNMLAN 409 (688)
Q Consensus 346 nVILDaTNl~rs~R~~~l~~~a~~~-~~--~vV~~~~peel~~R~~kR~~~~g~~Vpeevi~~m~a~ 409 (688)
.++.+.|.-.++.++. ++.++..+ -+ .+++++..|..++|++.|..++||+|||+++++.+.+
T Consensus 71 ~F~~ETtLS~~s~~~~-ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GGH~IpED~Ir~RY~r 136 (187)
T COG4185 71 PFIAETTLSGPSILEL-IKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGGHDIPEDKIRRRYRR 136 (187)
T ss_pred CcceEEeeccchHHHH-HHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 9999999888887764 66655433 12 2225577899999999999999999999999886643
No 45
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.93 E-value=2.7e-08 Score=97.46 Aligned_cols=114 Identities=21% Similarity=0.172 Sum_probs=70.7
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCCC--ceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHHh
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS 341 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~~--k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL 341 (688)
+.+.+|+|+|+|||||||+|+.+.+.+.. ..++.+..|.+++.+...|. ......+. + ..+..+.+...
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~~~~~----~~~~~~~~----~-~~~~~l~~~l~ 75 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILGHYGY----DKQSRIEM----A-LKRAKLAKFLA 75 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcCCCCC----CHHHHHHH----H-HHHHHHHHHHH
Confidence 35789999999999999999999877642 23677888888775421110 11111111 1 11112222234
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHH
Q 005604 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVK 389 (688)
Q Consensus 342 ~~G~nVILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~k 389 (688)
+.|..||+|.++..++.+... +.+. ....+|+|+++ +++++|+.+
T Consensus 76 ~~g~~VI~~~~~~~~~~~~~~-~~~~--~~~~~v~l~~~~e~~~~R~~~ 121 (176)
T PRK05541 76 DQGMIVIVTTISMFDEIYAYN-RKHL--PNYFEVYLKCDMEELIRRDQK 121 (176)
T ss_pred hCCCEEEEEeCCcHHHHHHHH-Hhhc--CCeEEEEEeCCHHHHHHhchh
Confidence 689999999998765444432 2111 13567788876 899999764
No 46
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.91 E-value=1.2e-08 Score=100.25 Aligned_cols=116 Identities=20% Similarity=0.216 Sum_probs=80.2
Q ss_pred CCcceEEEEeccCCCChhHHHHHHHhhCCCc--eEEEEcchHHHHHhhcCCccccCCChH--HHHHHHHHHHHHHHHHHH
Q 005604 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLILEQMKVPGLLRKHNYSE--RFQCLMGRANAIFDVLLS 338 (688)
Q Consensus 263 ~~~~~LIILvGLPGSGKST~Ar~L~~~~~~k--~~vvIStD~Ir~~m~i~G~~r~~~y~~--~~e~l~~~a~~~l~~lie 338 (688)
...+.+|+|+||+||||||+|.+|.+.+..+ ...++.-|.+|.-+. +...|.. +.+-+ .+ +....+
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~-----~dLgFs~edR~eni-RR----vaevAk 89 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLN-----RDLGFSREDRIENI-RR----VAEVAK 89 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhccc-----CCCCCChHHHHHHH-HH----HHHHHH
Confidence 3457899999999999999999998876543 357788888886432 1223332 22211 11 122334
Q ss_pred HHhcCCCeEEEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHH
Q 005604 339 RASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVK 389 (688)
Q Consensus 339 ~aL~~G~nVILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~k 389 (688)
...++|..||+-....+++.|....+.+. ..+|.-||+++| ++|.+|.-|
T Consensus 90 ll~daG~iviva~ISP~r~~R~~aR~~~~-~~~FiEVyV~~pl~vce~RDpK 140 (197)
T COG0529 90 LLADAGLIVIVAFISPYREDRQMARELLG-EGEFIEVYVDTPLEVCERRDPK 140 (197)
T ss_pred HHHHCCeEEEEEeeCccHHHHHHHHHHhC-cCceEEEEeCCCHHHHHhcCch
Confidence 45679999999999899999986444443 346888899998 999887643
No 47
>PLN02200 adenylate kinase family protein
Probab=98.90 E-value=2.4e-08 Score=103.14 Aligned_cols=139 Identities=18% Similarity=0.246 Sum_probs=78.5
Q ss_pred CCCcceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcc-hHHHHHhhcCCccccCCChHHHHHHHHHH----HHHHHHH
Q 005604 262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT-NLILEQMKVPGLLRKHNYSERFQCLMGRA----NAIFDVL 336 (688)
Q Consensus 262 ~~~~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvISt-D~Ir~~m~i~G~~r~~~y~~~~e~l~~~a----~~~l~~l 336 (688)
..+.+.+|+++|+|||||||+|++|++.++ +.+|+. |.+|+++.. .. .........+..- ......+
T Consensus 39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g---~~his~gdllR~~i~~-~s----~~~~~i~~~~~~G~~vp~e~~~~~ 110 (234)
T PLN02200 39 KEKTPFITFVLGGPGSGKGTQCEKIVETFG---FKHLSAGDLLRREIAS-NS----EHGAMILNTIKEGKIVPSEVTVKL 110 (234)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhC---CeEEEccHHHHHHHhc-cC----hhHHHHHHHHHcCCCCcHHHHHHH
Confidence 356688999999999999999999999886 678887 555655421 10 0010000000000 0011112
Q ss_pred HHHHhc--CCCeEEEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHHhhccCCCCCcHHHHHhhhccc
Q 005604 337 LSRASR--TPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANY 410 (688)
Q Consensus 337 ie~aL~--~G~nVILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~kR~~~~g~~Vpeevi~~m~a~f 410 (688)
+...+. .+..+|||....+..++.. +..+.+...-.+++|+++ +++++|+.+|... ..+-.++.+.+..+.|
T Consensus 111 l~~~l~~~~~~~~ILDG~Prt~~q~~~-l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~~-r~dd~~e~~~~Rl~~y 185 (234)
T PLN02200 111 IQKEMESSDNNKFLIDGFPRTEENRIA-FERIIGAEPNVVLFFDCPEEEMVKRVLNRNQG-RVDDNIDTIKKRLKVF 185 (234)
T ss_pred HHHHHhcCCCCeEEecCCcccHHHHHH-HHHHhccCCCEEEEEECCHHHHHHHHHcCcCC-CCCCCHHHHHHHHHHH
Confidence 222222 3467999997766666554 333333223356678776 7899999988421 1122345655544433
No 48
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.90 E-value=2.5e-08 Score=98.65 Aligned_cols=122 Identities=22% Similarity=0.292 Sum_probs=74.3
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCcccc-C--CCh---HHHHHHHHHHHHHHHHHHHHH
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRK-H--NYS---ERFQCLMGRANAIFDVLLSRA 340 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r~-~--~y~---~~~e~l~~~a~~~l~~lie~a 340 (688)
++|+|-|.|.|||||+|+.|.+.++ ..|+.|+.|.+++.|. .+.... . .+. .............+...+...
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~-~p~~~l~~D~f~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~iaa~ 79 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLP-EPWLHLSVDTFVDMMP-PGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIAAM 79 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSS-S-EEEEEHHHHHHHS--GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCc-CCeEEEecChHHhhcC-cccccCCccccccccCCchhHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999887 5689999999988653 111000 0 011 000122222233344556566
Q ss_pred hcCCCeEEEEcCCCCHHHHHHHH-HHHhcCCCEEEEEeCCH-HHHHHHHHHhh
Q 005604 341 SRTPRNFIIDQTNVFKSARKRKL-RLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (688)
Q Consensus 341 L~~G~nVILDaTNl~rs~R~~~l-~~~a~~~~~~vV~~~~p-eel~~R~~kR~ 391 (688)
.+.|.+||+|.......+-...+ +.|..+ ++.+|-+.|| +++.+|.+.|-
T Consensus 80 a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~-~vl~VgV~Cpleil~~RE~~Rg 131 (174)
T PF07931_consen 80 ARAGNNVIVDDVFLGPRWLQDCLRRLLAGL-PVLFVGVRCPLEILERRERARG 131 (174)
T ss_dssp HHTT-EEEEEE--TTTHHHHHHHHHHHTTS--EEEEEEE--HHHHHHHHHHHT
T ss_pred HhCCCCEEEecCccCcHHHHHHHHHHhCCC-ceEEEEEECCHHHHHHHHHhcC
Confidence 78999999998887766523334 445543 6777777776 89999999983
No 49
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.88 E-value=2.6e-08 Score=97.58 Aligned_cols=115 Identities=23% Similarity=0.333 Sum_probs=69.6
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHH-HHHhhcCCccccCCChHHHHHHH--------HHHHHHHHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLM--------GRANAIFDV 335 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~I-r~~m~i~G~~r~~~y~~~~e~l~--------~~a~~~l~~ 335 (688)
++.+|+++|+|||||||+|+.|++.++ +.+++++++ ++.+. .+. ........+. +.....+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g---~~~~~~g~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~ 73 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYG---FTHLSTGDLLRAEVA-SGS----ERGKQLQAIMESGDLVPLDTVLDLLKD 73 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC---CcEEeHHHHHHHHHh-cCC----HHHHHHHHHHHCCCCCCHHHHHHHHHH
Confidence 477999999999999999999999876 677877554 44321 110 0011001010 111122333
Q ss_pred HHHHHhcCCCeEEEEcCCCCHHHHHHHHHHHhc-CC-CEEEEEeCCH-HHHHHHHHHhh
Q 005604 336 LLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN-FR-KIAVVVFPKP-EDLKIRSVKRF 391 (688)
Q Consensus 336 lie~aL~~G~nVILDaTNl~rs~R~~~l~~~a~-~~-~~~vV~~~~p-eel~~R~~kR~ 391 (688)
.+..++..+..||+|.......+.. .+.. .. ...+++++++ +++.+|+.+|.
T Consensus 74 ~~~~~~~~~~~~i~dg~~~~~~q~~----~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~ 128 (188)
T TIGR01360 74 AMVAALGTSKGFLIDGYPREVKQGE----EFERRIGPPTLVLYFDCSEDTMVKRLLKRA 128 (188)
T ss_pred HHHcccCcCCeEEEeCCCCCHHHHH----HHHHcCCCCCEEEEEECCHHHHHHHHHccc
Confidence 3334466789999999655433332 2222 22 3467788886 78999999885
No 50
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.86 E-value=8.6e-09 Score=102.90 Aligned_cols=158 Identities=17% Similarity=0.306 Sum_probs=84.6
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccc--cCCC--hHHHHHHHHH-----------
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLR--KHNY--SERFQCLMGR----------- 328 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r--~~~y--~~~~e~l~~~----------- 328 (688)
..+.+|+|+|++||||||++++|.+.++.. +..++..+ +..+ .|... ++.| .++++..++.
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~-~~~v~~TT--R~~r-~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g 77 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEHPDF-LFSISCTT--RAPR-PGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHD 77 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcCCcc-ccccCccC--CCCC-CCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECC
Confidence 358899999999999999999999887631 22222111 1111 12110 1111 1122221110
Q ss_pred -HHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHHhc-CC-CEEEEEeCC--HHHHHHHHHHhhccCCCCCcHHHH
Q 005604 329 -ANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN-FR-KIAVVVFPK--PEDLKIRSVKRFKEMGKEVPADAV 403 (688)
Q Consensus 329 -a~~~l~~lie~aL~~G~nVILDaTNl~rs~R~~~l~~~a~-~~-~~~vV~~~~--peel~~R~~kR~~~~g~~Vpeevi 403 (688)
........++.+++.|+.+|+|-. . . - ++.+++ +. .+.+|++.. .+++++|+.+| +.. +++.+
T Consensus 78 ~~YGt~~~~i~~~~~~g~~~i~d~~-~--~---g-~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R----~~~-s~e~i 145 (186)
T PRK14737 78 NYYGTPKAFIEDAFKEGRSAIMDID-V--Q---G-AKIIKEKFPERIVTIFIEPPSEEEWEERLIHR----GTD-SEESI 145 (186)
T ss_pred eeecCcHHHHHHHHHcCCeEEEEcC-H--H---H-HHHHHHhCCCCeEEEEEECCCHHHHHHHHHhc----CCC-CHHHH
Confidence 111233446677899999999963 1 1 1 222222 33 334556643 48999999998 433 44444
Q ss_pred HhhhcccccCCCCCCCCCCCCCcEEEEeccCHHHHHHHHH
Q 005604 404 NNMLANYVLPVNKDTPGSDELFDQVMFVELDREEAQRHLD 443 (688)
Q Consensus 404 ~~m~a~fE~P~~~~~p~~~EgfdeI~~~el~~~ea~~li~ 443 (688)
+++.++.. +.. .....||.|+.++ +.+++.+-++
T Consensus 146 ~~Rl~~~~-~e~----~~~~~~D~vI~N~-dle~a~~ql~ 179 (186)
T PRK14737 146 EKRIENGI-IEL----DEANEFDYKIIND-DLEDAIADLE 179 (186)
T ss_pred HHHHHHHH-HHH----hhhccCCEEEECc-CHHHHHHHHH
Confidence 44443322 111 0146799999887 5555444443
No 51
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.83 E-value=9.3e-08 Score=95.86 Aligned_cols=114 Identities=15% Similarity=0.094 Sum_probs=75.6
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCCC--ceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHHh
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS 341 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~~--k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL 341 (688)
..+.+|+|+|++||||||+|+.|...+.. .+.+.|..|.++..+. +.. .+...+..+.+ ..+..++..++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~--~~~-~~~~~~~~~~~-----~~l~~~a~~~~ 93 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLC--SDL-GFSDADRKENI-----RRVGEVAKLMV 93 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhh--hcC-CcCcccHHHHH-----HHHHHHHHHHh
Confidence 35889999999999999999999886532 2367888888876532 110 01111111111 11222344556
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHH
Q 005604 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIR 386 (688)
Q Consensus 342 ~~G~nVILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R 386 (688)
..|..||++..+..++.|..+.+.+.+ ..+.+|+|+++ +++.+|
T Consensus 94 ~~G~~VI~~~~~~~~~~R~~~r~~l~~-~~~i~V~L~~~~e~~~~R 138 (198)
T PRK03846 94 DAGLVVLTAFISPHRAERQMVRERLGE-GEFIEVFVDTPLAICEAR 138 (198)
T ss_pred hCCCEEEEEeCCCCHHHHHHHHHHccc-CCEEEEEEcCCHHHHHhc
Confidence 789999988888888999875555443 35667899987 788888
No 52
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.83 E-value=7.1e-08 Score=95.15 Aligned_cols=116 Identities=21% Similarity=0.207 Sum_probs=70.3
Q ss_pred EEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHH----HHHHHHHHHHHHhc--
Q 005604 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR-- 342 (688)
Q Consensus 269 IILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~----a~~~l~~lie~aL~-- 342 (688)
|+++|+|||||||+|+.|++.++ +.+|+.|++.++.. ... .........++.. -...+..++..++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~---~~~i~~~~l~~~~~-~~~---~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~ 74 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG---LPHISTGDLLREEI-ASG---TELGKKAKEYIDSGKLVPDEIVIKLLKERLKKP 74 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC---CeEEECcHHHHHHH-hcC---ChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcc
Confidence 79999999999999999999876 77888876544321 110 0111111111110 00122334444444
Q ss_pred -CCCeEEEEcCCCCHHHHHHHHHHHhcC-CCEEEEEeCCH-HHHHHHHHHhh
Q 005604 343 -TPRNFIIDQTNVFKSARKRKLRLFVNF-RKIAVVVFPKP-EDLKIRSVKRF 391 (688)
Q Consensus 343 -~G~nVILDaTNl~rs~R~~~l~~~a~~-~~~~vV~~~~p-eel~~R~~kR~ 391 (688)
.++.+|||....+..+...+.+.+... ....+|+++++ +++++|+.+|.
T Consensus 75 ~~~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~ 126 (194)
T cd01428 75 DCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRR 126 (194)
T ss_pred cccCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 367899999766666666544443322 24466778876 79999999985
No 53
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.79 E-value=8.1e-08 Score=107.34 Aligned_cols=125 Identities=10% Similarity=0.164 Sum_probs=85.4
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhc-CCc-cccC----CChHHH---------------
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKV-PGL-LRKH----NYSERF--------------- 322 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i-~G~-~r~~----~y~~~~--------------- 322 (688)
+.+.+|+++|+||+||||+|.+|+..++. ..+|++|.+|+.|+- .+. .... .| ..|
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~--~~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty-~A~~~~~~~~~~~~~~~~ 329 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGI--TRIVSTDAVREVLRAMVSKDLLPTLHASTF-NAWRALLPPGEGLPAEPT 329 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCC--cEEeehhHHHHHHHhhcchhhccchhhchh-hHHhhccCcccccccccc
Confidence 45899999999999999999999999873 237899999887651 110 0000 00 011
Q ss_pred -----HHHHHHHHHH---HHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHHhcCCCE-EEEEeCCHHHHHHHHHHhhcc
Q 005604 323 -----QCLMGRANAI---FDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKI-AVVVFPKPEDLKIRSVKRFKE 393 (688)
Q Consensus 323 -----e~l~~~a~~~---l~~lie~aL~~G~nVILDaTNl~rs~R~~~l~~~a~~~~~-~vV~~~~peel~~R~~kR~~~ 393 (688)
.-+.+++... +..++++++..|.+||||..|+.+..... .....-..+ .+|+|.+.++.++|...|.+.
T Consensus 330 ~~~vi~Gf~~q~~~V~~gi~~vI~r~l~eG~SvIIEGVHl~P~~i~~--~~~~~~~~i~flv~isdeeeH~~Rf~~Ra~~ 407 (475)
T PRK12337 330 RAEVLRGFRDQVQQVAVGLGAIQERSAQEGTSLVLEGVHLVPGYLRH--PYQAGALVVPMLVTLPDEALHRRRFELRDRE 407 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCHHHHHH--HHhcCCceEEEEEEECCHHHHHHHHHHHhhh
Confidence 1122333333 67889999999999999999999987653 111111122 345778789999999999654
No 54
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.77 E-value=7.4e-08 Score=113.47 Aligned_cols=145 Identities=21% Similarity=0.185 Sum_probs=91.1
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCc--eEEEEcchHHHHHhhcCCccc-cCCChHHHHHHHHHHHHHHHHHHHHHh
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLILEQMKVPGLLR-KHNYSERFQCLMGRANAIFDVLLSRAS 341 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k--~~vvIStD~Ir~~m~i~G~~r-~~~y~~~~e~l~~~a~~~l~~lie~aL 341 (688)
...+|+|+|+||+||||+|++|++.+... ...+++.+.+++++.-.+... ........+ .+.+..+++.+....+
T Consensus 214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~e--~~~~~~~~~d~~~~v~ 291 (664)
T PTZ00322 214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLERRGGAVSSPTGAAEVE--FRIAKAIAHDMTTFIC 291 (664)
T ss_pred cceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhccCCCCcCCCCCHHHHH--HHHHHHHHHHHHHHHh
Confidence 35699999999999999999999886421 245666788887763111110 001111111 1223333444555556
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHhcCC-----CEEEEEe-CCHHHHHHHHHHhhccCCCCCcHHHHHhhhcccc
Q 005604 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFR-----KIAVVVF-PKPEDLKIRSVKRFKEMGKEVPADAVNNMLANYV 411 (688)
Q Consensus 342 ~~G~nVILDaTNl~rs~R~~~l~~~a~~~-----~~~vV~~-~~peel~~R~~kR~~~~g~~Vpeevi~~m~a~fE 411 (688)
..|..+|+|+||.++..|..+++.+++.+ .+.+|.+ .++++.++++..|........+++++.++++.++
T Consensus 292 ~~GgvaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~vc~~~~~i~~ni~r~~~~~~~~~e~~~~~~~~~~~ 367 (664)
T PTZ00322 292 KTDGVAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEVVNNNSETIRRNVLRAKEMFPGAPEDFVDRYYEVIE 367 (664)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEEeCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 77889999999999999988888887643 2333333 2245667777777544344456677777666654
No 55
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.75 E-value=1.1e-07 Score=96.55 Aligned_cols=116 Identities=19% Similarity=0.219 Sum_probs=68.1
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEEcchH-HHHHhhcCCccccCCChHHHHHHHHH----HHHHHHHHHHHHhc
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL-ILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR 342 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~-Ir~~m~i~G~~r~~~y~~~~e~l~~~----a~~~l~~lie~aL~ 342 (688)
.|+++|+|||||||+|+.|++.++ +.+|+.++ +++.+. .+. ........++.. -...+..++...++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~---~~~is~~dl~r~~~~-~~~----~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~ 73 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG---IPHISTGDMLRAAVK-AGT----ELGKEAKSYMDAGELVPDEIVIGLVKERLA 73 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CcEEECCccHHHHHh-ccc----hHHHHHHHHHHcCCcCCHHHHHHHHHHHHh
Confidence 388999999999999999999887 78888854 444432 111 111111111110 00112223333332
Q ss_pred ---CCCeEEEEcCCCCHHHHHHHHHHHhcCC-CE-EEEEeCCH-HHHHHHHHHhh
Q 005604 343 ---TPRNFIIDQTNVFKSARKRKLRLFVNFR-KI-AVVVFPKP-EDLKIRSVKRF 391 (688)
Q Consensus 343 ---~G~nVILDaTNl~rs~R~~~l~~~a~~~-~~-~vV~~~~p-eel~~R~~kR~ 391 (688)
.+..+|||...-+..+...+-+.++..+ .+ .+|+|+++ +++++|+.+|.
T Consensus 74 ~~~~~~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~ 128 (215)
T PRK00279 74 QPDCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRR 128 (215)
T ss_pred ccCccCCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCc
Confidence 2347999996666555554333344433 33 67788887 68899999985
No 56
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.69 E-value=1.4e-07 Score=95.43 Aligned_cols=114 Identities=22% Similarity=0.265 Sum_probs=67.1
Q ss_pred EEEeccCCCChhHHHHHHHhhCCCceEEEEcchH-HHHHhhcCCccccCCChHHHHHHHHH----HHHHHHHHHHHHhcC
Q 005604 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL-ILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASRT 343 (688)
Q Consensus 269 IILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~-Ir~~m~i~G~~r~~~y~~~~e~l~~~----a~~~l~~lie~aL~~ 343 (688)
|+++|+|||||||+|+.|++.++ +.+|++++ +|+.+. .+. ..+.....+++. -...+..++...+++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g---~~~is~gdllr~~~~-~~~----~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~ 73 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG---LPHISTGDLLRAEIK-AGT----PLGKKAKEYMEKGELVPDEIVNQLVKERLTQ 73 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC---CCeeehhHHHHHhhc-ccc----HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Confidence 78899999999999999999887 77888854 454432 110 011111111100 001122333333332
Q ss_pred ----CCeEEEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHHhh
Q 005604 344 ----PRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (688)
Q Consensus 344 ----G~nVILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~kR~ 391 (688)
++.+|||...-+..+...+.+.+.. ....+|+|+++ +++++|+.+|.
T Consensus 74 ~~~~~~~~ilDGfPrt~~Qa~~l~~~~~~-~~~~vi~L~~~~~~~~~Rl~~R~ 125 (210)
T TIGR01351 74 NQDNENGFILDGFPRTLSQAEALDALLKE-KIDAVIELDVPDEELVERLSGRR 125 (210)
T ss_pred CcccCCcEEEeCCCCCHHHHHHHHHHhcc-CCCEEEEEECCHHHHHHHHHCCC
Confidence 6789999965666555543332221 23467788887 78899999884
No 57
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.66 E-value=3.2e-07 Score=88.47 Aligned_cols=40 Identities=20% Similarity=0.353 Sum_probs=34.0
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHh
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m 307 (688)
.+.+|+|+|+|||||||+|+.|++.++ +..++.|.++++.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~---~~~~d~d~~~~~~ 42 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG---YDFIDTDHLIEAR 42 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC---CCEEEChHHHHHH
Confidence 467999999999999999999999986 5677888876653
No 58
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.66 E-value=2.3e-07 Score=92.03 Aligned_cols=147 Identities=15% Similarity=0.208 Sum_probs=77.9
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccc--cCCC--hHHHHHHHHH------------H
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLR--KHNY--SERFQCLMGR------------A 329 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r--~~~y--~~~~e~l~~~------------a 329 (688)
.++|+++|++||||+|+++.|++..++.-..+++..+ +..+ .|... ++.+ .++++..++. .
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~Tt--R~~r-~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~ 78 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTT--RPPR-PGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNY 78 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecC--CCCC-CCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcC
Confidence 5689999999999999999999887532122222111 1111 12110 1111 1222222211 0
Q ss_pred HHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHHhc-CCCEEEEEeCC--HHHHHHHHHHhhccCCCCCcHHHHHhh
Q 005604 330 NAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN-FRKIAVVVFPK--PEDLKIRSVKRFKEMGKEVPADAVNNM 406 (688)
Q Consensus 330 ~~~l~~lie~aL~~G~nVILDaTNl~rs~R~~~l~~~a~-~~~~~vV~~~~--peel~~R~~kR~~~~g~~Vpeevi~~m 406 (688)
.......++.+++.|+.+|||.+ ... ++.+.+ +....+|++.. .+++++|+.+| +...++++-.++
T Consensus 79 YGt~~~~i~~~~~~~~~~ild~~-~~~------~~~l~~~~~~~~vIfi~~~s~~~l~~rl~~R----~~~~~~~i~~rl 147 (184)
T smart00072 79 YGTSKETIRQVAEQGKHCLLDID-PQG------VKQLRKAQLYPIVIFIAPPSSEELERRLRGR----GTETAERIQKRL 147 (184)
T ss_pred cccCHHHHHHHHHcCCeEEEEEC-HHH------HHHHHHhCCCcEEEEEeCcCHHHHHHHHHhc----CCCCHHHHHHHH
Confidence 11223356677789999999986 321 111222 22345667743 37899999998 443334444444
Q ss_pred hcccccCCCCCCCCCCCCCcEEEEec
Q 005604 407 LANYVLPVNKDTPGSDELFDQVMFVE 432 (688)
Q Consensus 407 ~a~fE~P~~~~~p~~~EgfdeI~~~e 432 (688)
...-+.-.. .+.||.++.++
T Consensus 148 ~~a~~~~~~------~~~fd~~I~n~ 167 (184)
T smart00072 148 AAAQKEAQE------YHLFDYVIVND 167 (184)
T ss_pred HHHHHHHhh------hccCCEEEECc
Confidence 422111111 35689988875
No 59
>PRK14530 adenylate kinase; Provisional
Probab=98.65 E-value=3.7e-07 Score=92.59 Aligned_cols=117 Identities=16% Similarity=0.165 Sum_probs=67.1
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHH-hhcCCccccCCChHHHHHHHHH----HHHHHHHHHHHHhc
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ-MKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR 342 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~-m~i~G~~r~~~y~~~~e~l~~~----a~~~l~~lie~aL~ 342 (688)
.|+++|+|||||||+|+.|++.++ +.+|+++++.++ ...........+... ..++.. -...+..+++.++.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~---~~~i~~g~~lr~~~~~~~~~~~~~~~~~-~~~~~~g~~~~d~~~~~~l~~~l~ 80 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFG---VEHVTTGDALRANKQMDISDMDTEYDTP-GEYMDAGELVPDAVVNEIVEEALS 80 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CeEEeccHHHHHhccCCcccccchHHHH-HHHHHcCCCCCHHHHHHHHHHHHh
Confidence 588899999999999999999987 677777665443 210000000011110 111110 00123345555556
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHHhh
Q 005604 343 TPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (688)
Q Consensus 343 ~G~nVILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~kR~ 391 (688)
....+|||.-..+.++.. .+..+. ..-.+|+++++ +++++|+.+|.
T Consensus 81 ~~~~~IldG~pr~~~q~~-~l~~~~--~~d~vI~Ld~~~~~l~~Rl~~R~ 127 (215)
T PRK14530 81 DADGFVLDGYPRNLEQAE-YLESIT--DLDVVLYLDVSEEELVDRLTGRR 127 (215)
T ss_pred cCCCEEEcCCCCCHHHHH-HHHHhc--CCCEEEEEeCCHHHHHHHHhCCC
Confidence 667899998444444433 343322 22356788886 78899999884
No 60
>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]
Probab=98.65 E-value=5e-08 Score=96.70 Aligned_cols=140 Identities=17% Similarity=0.326 Sum_probs=91.5
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCCCce---EEEEcchHHH-HHhhcCCccccCCChH---HHHHHHHHHHHHHHHHH--
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHPEKR---YILLGTNLIL-EQMKVPGLLRKHNYSE---RFQCLMGRANAIFDVLL-- 337 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~~k~---~vvIStD~Ir-~~m~i~G~~r~~~y~~---~~e~l~~~a~~~l~~li-- 337 (688)
.|+.++|+|+||||||.+.+...+.+-+ .++++-|+++ ++. ... +..+.+ +++..++. |+...-
T Consensus 2 ~LlaliGiPAaGKSs~c~~ilga~aaLrvrhi~hlcfDDFlmdaT--pSa--D~a~keqRgr~~~~iEk---~ISaiqed 74 (291)
T KOG4622|consen 2 ALLALIGIPAAGKSSFCRKILGAHAALRVRHIEHLCFDDFLMDAT--PSA--DKAAKEQRGRFECHIEK---CISAIQED 74 (291)
T ss_pred ceeeeecCcccchhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcC--cch--hhhHHHHhchHHHHHHH---HHHHHhcc
Confidence 4788999999999999999976654321 3455667654 211 110 011211 12222222 221111
Q ss_pred -------HHH-----hcCCC-eEEEEcCCCCHHHHHHHHHHHhcCC-CEEEEEeCCH-HHHHHHHHHhhccCCCCCcHHH
Q 005604 338 -------SRA-----SRTPR-NFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADA 402 (688)
Q Consensus 338 -------e~a-----L~~G~-nVILDaTNl~rs~R~~~l~~~a~~~-~~~vV~~~~p-eel~~R~~kR~~~~g~~Vpeev 402 (688)
.+. -++|+ .+++|..++.+++|..+.+.+++.+ -|-+||+.+. ++|+++|..|. +...++.++
T Consensus 75 tdwppqvrrisssgdynsgrhiilcdD~FY~kSMR~k~~ki~kd~GciFG~Iflas~ide~LqaNS~Rs--da~k~~~dt 152 (291)
T KOG4622|consen 75 TDWPPQVRRISSSGDYNSGRHIILCDDIFYLKSMRHKFQKIAKDHGCIFGIIFLASGIDEALQANSHRS--DAEKQKNDT 152 (291)
T ss_pred cCCCchheeccccCCcCCCceEEEechHHHHHHhhhHHHHHHHHcCCeeeeeehhhhHHHHHHhccccc--cchhCccHH
Confidence 011 12344 6788999999999998666655555 6788898876 89999999996 345788999
Q ss_pred HHhhhcccccCCC
Q 005604 403 VNNMLANYVLPVN 415 (688)
Q Consensus 403 i~~m~a~fE~P~~ 415 (688)
+++|.+++|.|.+
T Consensus 153 iRki~EklE~PD~ 165 (291)
T KOG4622|consen 153 IRKIFEKLEDPDE 165 (291)
T ss_pred HHHHHHhccCccH
Confidence 9999999999986
No 61
>PRK13946 shikimate kinase; Provisional
Probab=98.63 E-value=5.9e-07 Score=89.10 Aligned_cols=131 Identities=11% Similarity=0.086 Sum_probs=78.6
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccccCCChHH--HHHHHHHHHHHHHHHHHHHhc
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSER--FQCLMGRANAIFDVLLSRASR 342 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r~~~y~~~--~e~l~~~a~~~l~~lie~aL~ 342 (688)
..+.|+|+|++||||||+++.|++.++ +-.+.+|.+.+++ .|..-. .+... ++.+.+ .-..+++.++.
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg---~~~id~D~~~~~~--~g~~~~-e~~~~~ge~~~~~----~e~~~l~~l~~ 78 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLG---LPFLDADTEIERA--ARMTIA-EIFAAYGEPEFRD----LERRVIARLLK 78 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC---CCeECcCHHHHHH--hCCCHH-HHHHHHCHHHHHH----HHHHHHHHHHh
Confidence 356899999999999999999999987 6678889876654 232100 00011 111111 11234445555
Q ss_pred CCCeEEEEc--CCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHHhhccC--CCCCcHHHHHhhhcccc
Q 005604 343 TPRNFIIDQ--TNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFKEM--GKEVPADAVNNMLANYV 411 (688)
Q Consensus 343 ~G~nVILDa--TNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~kR~~~~--g~~Vpeevi~~m~a~fE 411 (688)
.+..||... +.+.+..|.. ++ .. ..+|+|+.+ +++.+|+.+|..+. ....+.+.++++.+..+
T Consensus 79 ~~~~Vi~~ggg~~~~~~~r~~-l~---~~--~~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~R~ 146 (184)
T PRK13946 79 GGPLVLATGGGAFMNEETRAA-IA---EK--GISVWLKADLDVLWERVSRRDTRPLLRTADPKETLARLMEERY 146 (184)
T ss_pred cCCeEEECCCCCcCCHHHHHH-HH---cC--CEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHH
Confidence 665566653 5666666554 32 22 245788886 88999999874220 11234567777776655
No 62
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.63 E-value=4.5e-07 Score=88.71 Aligned_cols=153 Identities=18% Similarity=0.321 Sum_probs=76.9
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccccCCC----hHHHHHHHH------------HHH
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNY----SERFQCLMG------------RAN 330 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r~~~y----~~~~e~l~~------------~a~ 330 (688)
++|+|+|++||||||+++.|++.++.. .+.++ +..|+. ..|......+ ...+..... ...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~-~~~~~-~~tr~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 77 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNL-KFSIS-ATTRKP--RPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYY 77 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccc-ccccc-ceeeCC--CCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeee
Confidence 689999999999999999999876531 11111 111111 0111000000 011111100 001
Q ss_pred HHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHHhcCC-CEEEEEeCC-HHHHHHHHHHhhccCCCCCcHHHHHhhhc
Q 005604 331 AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPK-PEDLKIRSVKRFKEMGKEVPADAVNNMLA 408 (688)
Q Consensus 331 ~~l~~lie~aL~~G~nVILDaTNl~rs~R~~~l~~~a~~~-~~~vV~~~~-peel~~R~~kR~~~~g~~Vpeevi~~m~a 408 (688)
......++.++++|+.||+|.+.. .-..+. ..+. .+.+++++. .+++++|+.+| +.. +++.+.+..+
T Consensus 78 ~~~~~~i~~~~~~g~~vi~d~~~~---~~~~~~---~~~~~~~~i~~~~~~~e~~~~Rl~~r----~~~-~~~~i~~rl~ 146 (180)
T TIGR03263 78 GTPKSPVEEALAAGKDVLLEIDVQ---GARQVK---KKFPDAVSIFILPPSLEELERRLRKR----GTD-SEEVIERRLA 146 (180)
T ss_pred CCcHHHHHHHHHCCCeEEEECCHH---HHHHHH---HhCCCcEEEEEECCCHHHHHHHHHHc----CCC-CHHHHHHHHH
Confidence 112345667788999999997522 111111 2233 334444455 48999999988 333 4444544333
Q ss_pred ccccCCCCCCCCCCCCCcEEEEeccCHHHHHH
Q 005604 409 NYVLPVNKDTPGSDELFDQVMFVELDREEAQR 440 (688)
Q Consensus 409 ~fE~P~~~~~p~~~EgfdeI~~~el~~~ea~~ 440 (688)
+...... ..+.||.++.++ +.+++.+
T Consensus 147 ~~~~~~~-----~~~~~d~~i~n~-~~~~~~~ 172 (180)
T TIGR03263 147 KAKKEIA-----HADEFDYVIVND-DLEKAVE 172 (180)
T ss_pred HHHHHHh-----ccccCcEEEECC-CHHHHHH
Confidence 3321111 134589988775 4444433
No 63
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.62 E-value=7e-07 Score=88.61 Aligned_cols=114 Identities=13% Similarity=0.194 Sum_probs=61.2
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccccC-CC-hHHHHHHHHH------------HHH
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKH-NY-SERFQCLMGR------------ANA 331 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r~~-~y-~~~~e~l~~~------------a~~ 331 (688)
.++++++|++||||||+++.|+..... -+.++...+.+..+ .+. .+. .+ ..++....+. ...
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~--~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg 77 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT--QLLVAHRYITRPAS-AGS-ENHIALSEQEFFTRAGQNLFALSWHANGLYYG 77 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC--eEEEcCEECCCccc-hhH-HhheeEcHHHHHHHHHCCchhhHHHHhCCccC
Confidence 368999999999999999999877642 22332111111000 000 000 00 1111111100 001
Q ss_pred HHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHHhcCC-CEEEEEeCCH-HHHHHHHHHh
Q 005604 332 IFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKR 390 (688)
Q Consensus 332 ~l~~lie~aL~~G~nVILDaTNl~rs~R~~~l~~~a~~~-~~~vV~~~~p-eel~~R~~kR 390 (688)
..+ -++.+++.|++||+|.+ +..+.... +.+. ...+|+++++ +++.+|+.+|
T Consensus 78 ~~~-~~~~~l~~g~~VI~~G~---~~~~~~~~---~~~~~~~~vi~l~~s~e~l~~RL~~R 131 (186)
T PRK10078 78 VGI-EIDLWLHAGFDVLVNGS---RAHLPQAR---ARYQSALLPVCLQVSPEILRQRLENR 131 (186)
T ss_pred CcH-HHHHHHhCCCEEEEeCh---HHHHHHHH---HHcCCCEEEEEEeCCHHHHHHHHHHh
Confidence 122 25567889999999876 22222211 2233 5667788776 8999999988
No 64
>PRK12338 hypothetical protein; Provisional
Probab=98.62 E-value=4.1e-07 Score=97.84 Aligned_cols=121 Identities=19% Similarity=0.260 Sum_probs=79.4
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCcccc--------CCChHHHH-------------
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRK--------HNYSERFQ------------- 323 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r~--------~~y~~~~e------------- 323 (688)
.+.+|+++|.|||||||+|+.|++.++. -.++++|.+|+.++ |...+ ..| +.|.
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~--~~~~~tD~~r~~~~--~~~~~~~~P~l~~ssy-~a~~~l~~~~~~~~~~~ 77 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNI--KHLIETDFIREVVR--GIIGKEYAPALHKSSY-NAYTALRDKENFKNNEE 77 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCC--eEEccChHHHHHHc--CCCCcccCchhhcccH-HHHhhcCCcccccchHH
Confidence 4789999999999999999999999873 23458899998765 21111 011 1221
Q ss_pred ----HHHHH---HHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHHhcCCCEEEEEe-CCHHHHHHHHHHhhc
Q 005604 324 ----CLMGR---ANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVF-PKPEDLKIRSVKRFK 392 (688)
Q Consensus 324 ----~l~~~---a~~~l~~lie~aL~~G~nVILDaTNl~rs~R~~~l~~~a~~~~~~vV~~-~~peel~~R~~kR~~ 392 (688)
-+.++ +...+..+++++++.|.+||||..++.+..... ..+.....+.++++ ...++.++|...|.+
T Consensus 78 ~i~~gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~--~~~~~~~~v~~~vl~~dee~h~~Rf~~R~~ 152 (319)
T PRK12338 78 LICAGFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDI--EQFEENASIHFFILSADEEVHKERFVKRAM 152 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhh--hhhcccCceEEEEEECCHHHHHHHHHHhhh
Confidence 11122 223455678888899999999999998876553 11111123444433 445799999999764
No 65
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=98.62 E-value=6.6e-08 Score=104.21 Aligned_cols=134 Identities=23% Similarity=0.242 Sum_probs=98.0
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR 345 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL~~G~ 345 (688)
.++|+|+|.|||||||++......+. ++++++|. .|.+ .. |+. ....+|+.++
T Consensus 269 ~eiV~~vgfp~sGks~f~a~~~~~~~---y~~vn~d~-------lg~~---------~~-------C~~-~~~e~l~~~~ 321 (422)
T KOG2134|consen 269 GEIVVAVGFPGSGKSTFAAKRVVPNG---YKIVNADT-------LGTP---------QN-------CLL-ANAEALKHGK 321 (422)
T ss_pred CcEEEEEecCCCCcchhhhhhcccCc---eeEeeccc-------CCCc---------hh-------hHH-HHHHHhhccc
Confidence 49999999999999999999887765 88888774 3321 11 222 2236789999
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhcCC-CEEEEEeCCH-HHHHHHHHHhhccCC--CCCcHHHHHhhhcccccCCCCCCCCC
Q 005604 346 NFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMG--KEVPADAVNNMLANYVLPVNKDTPGS 421 (688)
Q Consensus 346 nVILDaTNl~rs~R~~~l~~~a~~~-~~~vV~~~~p-eel~~R~~kR~~~~g--~~Vpeevi~~m~a~fE~P~~~~~p~~ 421 (688)
.||+|.||...+.|+.++....+.. .+..+.+.+. |..+.-+..|..... ..+++-++..++.+|+.|..
T Consensus 322 sVvidnt~pd~~sr~~~~~~a~e~~~p~rcf~~~~s~eq~~hn~~fR~~~~~~~~~~~dm~~~~~k~kf~~ptl------ 395 (422)
T KOG2134|consen 322 SVVIDNTNPDAESRKYYLDCATEREIPIRCFEMNSSVEQAQHNNRFRELSDSVKDSGSDMVFNSEKSKFQKPTL------ 395 (422)
T ss_pred EEeeCCCCcchHHHHHHhhhHHHhCccceeeeeccHHHhhhccccchhhccchhcccccceeehhhccccCchH------
Confidence 9999999999999998777665543 3333444555 666666777764332 24556677788899999997
Q ss_pred CCCCcEEEEec
Q 005604 422 DELFDQVMFVE 432 (688)
Q Consensus 422 ~EgfdeI~~~e 432 (688)
+|+|..|+-++
T Consensus 396 ~egft~i~ev~ 406 (422)
T KOG2134|consen 396 DEGFTNILEVP 406 (422)
T ss_pred hhhhhhhhccc
Confidence 89999987664
No 66
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=98.59 E-value=5.8e-07 Score=88.84 Aligned_cols=119 Identities=24% Similarity=0.223 Sum_probs=74.3
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHH-HHHhhcCCccccCCChHHHHHHHHHHH-------HHHHH
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMGRAN-------AIFDV 335 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~I-r~~m~i~G~~r~~~y~~~~e~l~~~a~-------~~l~~ 335 (688)
+.+.+|++.|.|||||-|...++++.++ |.+||+.++ |++....|. +.+..+.+... +...+
T Consensus 6 ~~~~IifVlGGPGsgKgTqC~kiv~ky~---ftHlSaGdLLR~E~~~~gs-------e~g~~I~~~i~~G~iVP~ei~~~ 75 (195)
T KOG3079|consen 6 DKPPIIFVLGGPGSGKGTQCEKIVEKYG---FTHLSAGDLLRAEIASAGS-------ERGALIKEIIKNGDLVPVEITLS 75 (195)
T ss_pred cCCCEEEEEcCCCCCcchHHHHHHHHcC---ceeecHHHHHHHHHccccC-------hHHHHHHHHHHcCCcCcHHHHHH
Confidence 4688999999999999999999999988 899999665 444321121 22222222211 23445
Q ss_pred HHHHHhcCCC---eEEEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHHhhcc
Q 005604 336 LLSRASRTPR---NFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFKE 393 (688)
Q Consensus 336 lie~aL~~G~---nVILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~kR~~~ 393 (688)
|++.++.+.. .++||.=--..++...|=+.+.. ..-.+++|+|+ |+|++|+..|.+.
T Consensus 76 LL~~am~~~~~~~~fLIDGyPR~~~q~~~fe~~i~~-~~~fvl~fdc~ee~~l~Rll~R~q~ 136 (195)
T KOG3079|consen 76 LLEEAMRSSGDSNGFLIDGYPRNVDQLVEFERKIQG-DPDFVLFFDCPEETMLKRLLHRGQS 136 (195)
T ss_pred HHHHHHHhcCCCCeEEecCCCCChHHHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHhhccc
Confidence 5555544322 29999844443444432222221 12345588997 7999999999754
No 67
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.58 E-value=2.4e-07 Score=93.76 Aligned_cols=150 Identities=13% Similarity=0.158 Sum_probs=74.5
Q ss_pred CCCCcceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchH-HHHHhhcCCccccCCC--hHHHHHHHH----------
Q 005604 261 CNMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL-ILEQMKVPGLLRKHNY--SERFQCLMG---------- 327 (688)
Q Consensus 261 ~~~~~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~-Ir~~m~i~G~~r~~~y--~~~~e~l~~---------- 327 (688)
..+..+.+|+++|++||||||+++.|.+.... -...++..+ ..+.-.+.|. .+.+ ..+++....
T Consensus 8 ~~~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~-~~~~~~~ttr~~r~~e~~g~--~y~fv~~~~f~~~~~~~~~le~~~~ 84 (206)
T PRK14738 8 NKPAKPLLVVISGPSGVGKDAVLARMRERKLP-FHFVVTATTRPKRPGEIDGV--DYHFVTPEEFREMISQNELLEWAEV 84 (206)
T ss_pred CCCCCCeEEEEECcCCCCHHHHHHHHHhcCCc-ccccccccCCCCCCCCCCCC--eeeeCCHHHHHHHHHcCCcEEEEEE
Confidence 34457899999999999999999999764321 111221111 0000000110 0100 111111110
Q ss_pred --HHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHHhcCC-CEEEEEe-CC-HHHHHHHHHHhhccCCCCCcHHH
Q 005604 328 --RANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVF-PK-PEDLKIRSVKRFKEMGKEVPADA 402 (688)
Q Consensus 328 --~a~~~l~~lie~aL~~G~nVILDaTNl~rs~R~~~l~~~a~~~-~~~vV~~-~~-peel~~R~~kR~~~~g~~Vpeev 402 (688)
.........++.+++.|+.||+|.+- ..+ ..+++.. ...++++ +. .+++++|+.+|. ..-.+++
T Consensus 85 ~g~~YGt~~~~i~~~~~~g~~vi~~~~~---~g~----~~l~~~~pd~~~if~~pps~e~l~~Rl~~R~----~~~~~~~ 153 (206)
T PRK14738 85 YGNYYGVPKAPVRQALASGRDVIVKVDV---QGA----ASIKRLVPEAVFIFLAPPSMDELTRRLELRR----TESPEEL 153 (206)
T ss_pred cCceecCCHHHHHHHHHcCCcEEEEcCH---HHH----HHHHHhCCCeEEEEEeCCCHHHHHHHHHHcC----CCCHHHH
Confidence 00011123466678899999998642 222 2233322 4455544 33 378999999983 2323444
Q ss_pred HHhhhcccc-cCCCCCCCCCCCCCcEEEEe
Q 005604 403 VNNMLANYV-LPVNKDTPGSDELFDQVMFV 431 (688)
Q Consensus 403 i~~m~a~fE-~P~~~~~p~~~EgfdeI~~~ 431 (688)
..++...++ +.. .+.|+.+++.
T Consensus 154 ~~Rl~~~~~e~~~-------~~~~~~~iId 176 (206)
T PRK14738 154 ERRLATAPLELEQ-------LPEFDYVVVN 176 (206)
T ss_pred HHHHHHHHHHHhc-------ccCCCEEEEC
Confidence 455554432 332 2346666554
No 68
>PRK02496 adk adenylate kinase; Provisional
Probab=98.57 E-value=9.3e-07 Score=87.20 Aligned_cols=133 Identities=17% Similarity=0.153 Sum_probs=74.1
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHH-HHHhhcCCccccCCChHHHHHHHHH----HHHHHHHHHHHHh-
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRAS- 341 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~I-r~~m~i~G~~r~~~y~~~~e~l~~~----a~~~l~~lie~aL- 341 (688)
-|++.|+|||||||+|+.|++.++ +.+|+.+++ ++.+. .+. ........++.. -...+..++...+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~---~~~i~~~~~~~~~~~-~~~----~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~ 74 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLH---IPHISTGDILRQAIK-EQT----PLGIKAQGYMDKGELVPDQLVLDLVQERLQ 74 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CcEEEhHHHHHHHHh-ccC----hhHHHHHHHHHCCCccCHHHHHHHHHHHHh
Confidence 378899999999999999999876 667877654 44332 111 001000001000 0001112222222
Q ss_pred --cCCCeEEEEcCCCCHHHHHHHHHHHhcCC--CEEEEEeCCH-HHHHHHHHHhhccCCCCCcHHHHHhhhcccc
Q 005604 342 --RTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYV 411 (688)
Q Consensus 342 --~~G~nVILDaTNl~rs~R~~~l~~~a~~~--~~~vV~~~~p-eel~~R~~kR~~~~g~~Vpeevi~~m~a~fE 411 (688)
.....+|||..--+..+...+-+.+...+ ...+|+++++ +.+++|+.+|. ..+-.++.+++..+.|+
T Consensus 75 ~~~~~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~---~~dd~~~~~~~r~~~y~ 146 (184)
T PRK02496 75 QPDAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARG---RKDDTEEVIRRRLEVYR 146 (184)
T ss_pred CcCccCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCC---CCCCCHHHHHHHHHHHH
Confidence 23457999986555554333222333332 3356677776 79999999984 23345677777666554
No 69
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.56 E-value=2e-06 Score=84.48 Aligned_cols=141 Identities=13% Similarity=0.077 Sum_probs=71.7
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCCCce--EEEEcc-------hHHHHHhhcCCccccCCChHHHHHHHHHH--HHHHHH
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHPEKR--YILLGT-------NLILEQMKVPGLLRKHNYSERFQCLMGRA--NAIFDV 335 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~~k~--~vvISt-------D~Ir~~m~i~G~~r~~~y~~~~e~l~~~a--~~~l~~ 335 (688)
.+|++.|++||||||+++.|++.+...+ ++.+.. +.+++.+. ... ..........+.-.+ ...+..
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~r~~~~~~ 77 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIRELLL-DPE--DEKMDPRAELLLFAADRAQHVEE 77 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCCchHHHHHHHHh-ccC--ccCCCHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999998774222 333321 12333221 100 000111111111111 112233
Q ss_pred HHHHHhcCCCeEEEEcCCCCH------------HHHHHHHHHHhc-C-CCEEEEEeCCH-HHHHHHHHHhhccCCC-CCc
Q 005604 336 LLSRASRTPRNFIIDQTNVFK------------SARKRKLRLFVN-F-RKIAVVVFPKP-EDLKIRSVKRFKEMGK-EVP 399 (688)
Q Consensus 336 lie~aL~~G~nVILDaTNl~r------------s~R~~~l~~~a~-~-~~~~vV~~~~p-eel~~R~~kR~~~~g~-~Vp 399 (688)
.+..++..|..||+|...... .... ++..+.. . ....+|++.++ +++++|+.+|...... ...
T Consensus 78 ~~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~ 156 (200)
T cd01672 78 VIKPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIE-ALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDDRDEQEG 156 (200)
T ss_pred HHHHHHhCCCEEEECCCcchHHHhCccccCCCHHHHH-HHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhhh
Confidence 444557789999999322111 1112 2222222 1 23467788776 8999999998532111 233
Q ss_pred HHHHHhhhcccc
Q 005604 400 ADAVNNMLANYV 411 (688)
Q Consensus 400 eevi~~m~a~fE 411 (688)
.+.++++...++
T Consensus 157 ~~~~~~~~~~y~ 168 (200)
T cd01672 157 LEFHERVREGYL 168 (200)
T ss_pred HHHHHHHHHHHH
Confidence 455555555554
No 70
>PRK08356 hypothetical protein; Provisional
Probab=98.55 E-value=1.3e-06 Score=87.34 Aligned_cols=162 Identities=18% Similarity=0.152 Sum_probs=80.2
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchH-HHHHhhcCCccccCCCh-H-HH------HHHHHHHH------
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL-ILEQMKVPGLLRKHNYS-E-RF------QCLMGRAN------ 330 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~-Ir~~m~i~G~~r~~~y~-~-~~------e~l~~~a~------ 330 (688)
..+|+++|+|||||||+|+.|. +++ +.+|+..+ +++.++..+. ++.+- . .. +.+++.+.
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~-~~g---~~~is~~~~~~~~~~~~~~--~~~f~~~~~~~~~~~~~~~~e~g~~~~~~y 78 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE-EKG---FCRVSCSDPLIDLLTHNVS--DYSWVPEVPFKGEPTRENLIELGRYLKEKY 78 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH-HCC---CcEEeCCCccccccccccc--ccccccHHHHhhccccccHHHHHHHHHHhc
Confidence 4689999999999999999995 454 45666653 2222111111 11000 0 00 11111111
Q ss_pred --HHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHHhhccCCCCC-cHHHHHhh
Q 005604 331 --AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFKEMGKEV-PADAVNNM 406 (688)
Q Consensus 331 --~~l~~lie~aL~~G~nVILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~kR~~~~g~~V-peevi~~m 406 (688)
..+.+++...++....||||.- .+..++.. ++ +.. ..+|++.++ +++.+|+.+|.......+ +.+.+.++
T Consensus 79 G~~~~~~~~~~~~~~~~~ividG~-r~~~q~~~-l~---~~~-~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~ 152 (195)
T PRK08356 79 GEDILIRLAVDKKRNCKNIAIDGV-RSRGEVEA-IK---RMG-GKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLKF 152 (195)
T ss_pred CcHHHHHHHHHHhccCCeEEEcCc-CCHHHHHH-HH---hcC-CEEEEEECCHHHHHHHHHhcCCccccccccHHHHHHH
Confidence 1111122222344457999975 54444433 22 222 256677765 789999999853211111 23333433
Q ss_pred hc-cc---ccCCCCCCCCCCCCCcEEEEeccCHHHHHHHHHHH
Q 005604 407 LA-NY---VLPVNKDTPGSDELFDQVMFVELDREEAQRHLDEM 445 (688)
Q Consensus 407 ~a-~f---E~P~~~~~p~~~EgfdeI~~~el~~~ea~~li~~~ 445 (688)
.+ .. +... ..+.+|-++.++.+.+++.+-+.++
T Consensus 153 ~~~~~~l~~~~~------~~~~aD~vI~N~~~~e~~~~~i~~~ 189 (195)
T PRK08356 153 DEWEEKLYHTTK------LKDKADFVIVNEGTLEELRKKVEEI 189 (195)
T ss_pred HHHHHHhhhhhh------HHHhCcEEEECCCCHHHHHHHHHHH
Confidence 22 11 2222 1356788886655666555554443
No 71
>PRK00625 shikimate kinase; Provisional
Probab=98.54 E-value=7.3e-07 Score=88.19 Aligned_cols=36 Identities=22% Similarity=0.414 Sum_probs=30.8
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHH
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ 306 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~ 306 (688)
.|+|+|.|||||||+++.|++.+. +..|+.|.+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~---~~~id~D~~I~~ 37 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS---LPFFDTDDLIVS 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CCEEEhhHHHHH
Confidence 489999999999999999999886 677888876554
No 72
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.52 E-value=6.7e-07 Score=84.81 Aligned_cols=106 Identities=18% Similarity=0.193 Sum_probs=60.1
Q ss_pred EEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccccCCChHH--HHHHHHHHHHHHHHHHHHHhcCCCe
Q 005604 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSER--FQCLMGRANAIFDVLLSRASRTPRN 346 (688)
Q Consensus 269 IILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r~~~y~~~--~e~l~~~a~~~l~~lie~aL~~G~n 346 (688)
|+|+|+|||||||+|+.|++.++ +..++.|.++++. .|..- ..+... ++.+..... +++..++..+ +
T Consensus 2 i~l~G~~GsGKstla~~la~~l~---~~~~~~d~~~~~~--~~~~~-~~~~~~~~~~~~~~~e~----~~~~~~~~~~-~ 70 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG---LPFVDLDELIEQR--AGMSI-PEIFAEEGEEGFRELER----EVLLLLLTKE-N 70 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC---CCEEEchHHHHHH--cCCCH-HHHHHHHCHHHHHHHHH----HHHHHHhccC-C
Confidence 78999999999999999999886 6678888876654 22100 000000 111111111 1333333444 4
Q ss_pred EEEEcCC---CCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHHhh
Q 005604 347 FIIDQTN---VFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (688)
Q Consensus 347 VILDaTN---l~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~kR~ 391 (688)
+||+... .....|+ .+.. ...+||+.++ +++++|+.+|.
T Consensus 71 ~vi~~g~~~i~~~~~~~----~~~~--~~~~i~l~~~~e~~~~R~~~r~ 113 (154)
T cd00464 71 AVIATGGGAVLREENRR----LLLE--NGIVVWLDASPEELLERLARDK 113 (154)
T ss_pred cEEECCCCccCcHHHHH----HHHc--CCeEEEEeCCHHHHHHHhccCC
Confidence 5555322 2222211 2222 3457788887 78889998874
No 73
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.51 E-value=1.7e-06 Score=84.73 Aligned_cols=129 Identities=12% Similarity=0.122 Sum_probs=64.7
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCCCce-EEEEcchHHHHHhhcCCccccCCChHHHHHHHHH--------H---HHHHH
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHPEKR-YILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR--------A---NAIFD 334 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~~k~-~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~--------a---~~~l~ 334 (688)
++|+++|+|||||||+++.|+..++... ..++.++.-+.. ...|..-.......+...... . .--..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 80 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPA-SAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIP 80 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCC-CCCCccccccCHHHHHHHHHCCCEEEEEeecCccccCh
Confidence 5899999999999999999988764321 222212111110 001110000000111100000 0 00001
Q ss_pred HHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHHhhccCCCCCcHHHHHhh
Q 005604 335 VLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNM 406 (688)
Q Consensus 335 ~lie~aL~~G~nVILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~kR~~~~g~~Vpeevi~~m 406 (688)
..+..++.+|.+||+|.. ...+....+. +..+.+|+++++ +++.+|+.+| +...++++..++
T Consensus 81 ~~i~~~~~~g~~vv~~g~---~~~~~~~~~~---~~~~~~i~l~~~~~~~~~Rl~~R----~~~~~~~~~~rl 143 (179)
T TIGR02322 81 AEIDQWLEAGDVVVVNGS---RAVLPEARQR---YPNLLVVNITASPDVLAQRLAAR----GRESREEIEERL 143 (179)
T ss_pred HHHHHHHhcCCEEEEECC---HHHHHHHHHH---CCCcEEEEEECCHHHHHHHHHHc----CCCCHHHHHHHH
Confidence 123345678999999985 2222222221 225677788776 8999999998 333344444444
No 74
>PLN02772 guanylate kinase
Probab=98.51 E-value=1.3e-06 Score=96.05 Aligned_cols=166 Identities=16% Similarity=0.228 Sum_probs=86.2
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCcc--ccCCCh--HHHHHHH------------HH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL--RKHNYS--ERFQCLM------------GR 328 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~--r~~~y~--~~~e~l~------------~~ 328 (688)
..++|+++|++|+||+|++++|.++.+..-...++..+ +..+ .|.. ..+.|. ++++..+ ..
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTT--R~pR-~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn 210 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTT--RAPR-EMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGN 210 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccC--CCCc-ccccCCceEeeCCHHHHHHHHHhCccceeeeecCc
Confidence 45799999999999999999998876531111222211 1111 1110 011111 1121111 11
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCC-HHHHHHHHHHhhccCCCCCcHHHHHhhh
Q 005604 329 ANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPK-PEDLKIRSVKRFKEMGKEVPADAVNNML 407 (688)
Q Consensus 329 a~~~l~~lie~aL~~G~nVILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~-peel~~R~~kR~~~~g~~Vpeevi~~m~ 407 (688)
.....++.++.++++|+.+|||-. ..-.+.+.+.. ...+.+++++. .+++.+|+..| +.. .++.|+++.
T Consensus 211 ~YGTsk~~V~~vl~~Gk~vILdLD---~qGar~Lr~~~--l~~v~IFI~PPSlEeLe~RL~~R----Gte-seE~I~kRL 280 (398)
T PLN02772 211 LYGTSIEAVEVVTDSGKRCILDID---VQGARSVRASS--LEAIFIFICPPSMEELEKRLRAR----GTE-TEEQIQKRL 280 (398)
T ss_pred cccccHHHHHHHHHhCCcEEEeCC---HHHHHHHHHhc--CCeEEEEEeCCCHHHHHHHHHhc----CCC-CHHHHHHHH
Confidence 112344566778899999999952 22222222211 22333334443 48999999998 443 344555544
Q ss_pred ccc--ccCCCCCCCCCCCCCcEEEEeccCHHHHHHHHHHHHhc
Q 005604 408 ANY--VLPVNKDTPGSDELFDQVMFVELDREEAQRHLDEMKGT 448 (688)
Q Consensus 408 a~f--E~P~~~~~p~~~EgfdeI~~~el~~~ea~~li~~~~~~ 448 (688)
++. |+... .....||.++.++ +.+++.+-+..+-.+
T Consensus 281 ~~A~~Ei~~~----~~~~~fD~vIvND-dLe~A~~~L~~iL~~ 318 (398)
T PLN02772 281 RNAEAELEQG----KSSGIFDHILYND-NLEECYKNLKKLLGL 318 (398)
T ss_pred HHHHHHHhhc----cccCCCCEEEECC-CHHHHHHHHHHHHhh
Confidence 433 33321 0135799998886 555544444444333
No 75
>KOG1477 consensus SPRY domain-containing proteins [General function prediction only]
Probab=98.51 E-value=2.8e-07 Score=103.75 Aligned_cols=166 Identities=20% Similarity=0.177 Sum_probs=116.4
Q ss_pred CCceecCcCCCCCCeE-EcCCCceEeecCCCCccceeeeeeeeeeEe--CcEEEEEEEEEecCCCCCCCCCCCCCCcEEE
Q 005604 41 KQRVVLNPADCDLDFD-IEDNGLKSSGLHQEGFAYCWSGARANVGIN--GGKYCFGCKIVSTQPVDMEDTPPDQQHVCRV 117 (688)
Q Consensus 41 ~~~v~Ls~~D~~~~l~-Is~dgl~v~~~~~~g~~~~w~~vRAn~gv~--~Gk~YfEV~I~~~~~~~~~~t~~~~~g~irV 117 (688)
....+||+-+..-.+. +..|...+..............+-|+..+. .|.+||||.|.+.. ..+.+.|
T Consensus 29 ~i~~~~~~~~~~~~~~~~~~~~gi~f~~~~~~~~~dvg~~~~~~~~~~N~~~~~Fe~~i~d~g----------~~~~i~i 98 (469)
T KOG1477|consen 29 VIPCEVNTINGSDFFTKNGPDMGIAFYTPPALLYHDVGVVQAGEPLPANFGIYYFEFDILDYG----------IEGRIKI 98 (469)
T ss_pred cccceEeccCCceeEEEEcCCcceeeecCccccCCCcceeeCCCCCCcccccceeeeeHHHhh----------hhhceEE
Confidence 4468999888766555 456655443221111122334444444444 57999999999653 4678899
Q ss_pred EEecCCCC-CCCCCCCCcceEEccC-CceeeCC--CcccCCCCCCCCCEEEEEEecCCCCccEEEEEECCeeeeeeeecc
Q 005604 118 GTSRGDDP-VGKLGETEQSFGFGGT-GKFSHGG--NFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFD 193 (688)
Q Consensus 118 Gwst~~~~-~~~lG~d~~SyGy~g~-G~~~~~~--~~~~YG~~f~~GDVIGC~LDl~~~p~~~I~FtkNG~~LG~Af~~~ 193 (688)
|....... ....|+...||+|.++ |.+.+.+ ....|+++|..||.|||.++... .+|+|++||..+|.+++--
T Consensus 99 ~~~~~~~~~~~~~g~~~~s~~y~g~~g~l~~~~~~~~~~~~~~~~~~D~ig~~~~~~~---q~i~~t~~g~~~~~~~~~~ 175 (469)
T KOG1477|consen 99 GFLIDSFSIIESEGYTMNSLGYHGNSGLLDNGGAELGEEFGPTFTTGDEIGCGINEIT---QEIFFTKNGTEVGEIIKPL 175 (469)
T ss_pred EEEecccccccccchhhhhhcccCCchhhhhhhhhhchhhcCCCCccceeeeccchhh---heeeeccCccccccccccc
Confidence 99886654 6688999999999875 5555523 34689999999999999999997 7999999999999998621
Q ss_pred CCCCCcccccccccccccCCcceeE----EE-Ec-CeEEEEEcc-CCCCCC
Q 005604 194 AGSNGLGVVDSAVKERQCESAVFPH----IL-LK-NVVVVMQFS-VEQGLI 237 (688)
Q Consensus 194 ~~~~~L~la~~d~~g~~~~~~lfPa----Vs-l~-n~~v~vNFG-~~~~~~ 237 (688)
...++|. +. +. +..|.+||| +..+++
T Consensus 176 ------------------~~~~~~~~~n~~~~~s~~~~I~~~~g~~~~~~f 208 (469)
T KOG1477|consen 176 ------------------SPDLLEENGNLAWLFSPNEEVEVNFGLEEEFRF 208 (469)
T ss_pred ------------------cccccccccceeeEeccCceeeeeecCCCceee
Confidence 1234444 44 44 999999999 555554
No 76
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.50 E-value=6e-07 Score=88.75 Aligned_cols=154 Identities=22% Similarity=0.370 Sum_probs=81.5
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccc--cCCC--hHHHHHHHHHHH-----------
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLR--KHNY--SERFQCLMGRAN----------- 330 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r--~~~y--~~~~e~l~~~a~----------- 330 (688)
.++|+|+|++||||||++++|++.++.+-...++..+ +..+ .|... ++.+ .++++.+.+.-.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TT--R~~r-~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~ 78 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTT--RPPR-PGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNY 78 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEES--S-GG-TTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecc--cCCc-ccccCCcceEEEeechhhhhhccccEEEEeeecchh
Confidence 5789999999999999999999998854333343221 1111 22110 1111 122222211100
Q ss_pred -HHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHHhcCC-CEEEEEe--CCHHHHHHHHHHhhccCCCCCcHHHHHhh
Q 005604 331 -AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVF--PKPEDLKIRSVKRFKEMGKEVPADAVNNM 406 (688)
Q Consensus 331 -~~l~~lie~aL~~G~nVILDaTNl~rs~R~~~l~~~a~~~-~~~vV~~--~~peel~~R~~kR~~~~g~~Vpeevi~~m 406 (688)
......++.+++.|+.+|||.. .. . ++.+++.. ...+||+ ++++++++|+.+| +.+-.+++.+++
T Consensus 79 YGt~~~~i~~~~~~gk~~il~~~-~~--g----~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r----~~~~~~~i~~r~ 147 (183)
T PF00625_consen 79 YGTSKSAIDKVLEEGKHCILDVD-PE--G----VKQLKKAGFNPIVIFIKPPSPEVLKRRLRRR----GDESEEEIEERL 147 (183)
T ss_dssp EEEEHHHHHHHHHTTTEEEEEET-HH--H----HHHHHHCTTTEEEEEEEESSHHHHHHHHHTT----THCHHHHHHHHH
T ss_pred hhhccchhhHhhhcCCcEEEEcc-HH--H----HHHHHhcccCceEEEEEccchHHHHHHHhcc----ccccHHHHHHHH
Confidence 0122345667789999999975 21 1 22233323 4555565 5568899998887 333223333333
Q ss_pred hc---ccccCCCCCCCCCCCCCcEEEEeccCHHHHHHHHH
Q 005604 407 LA---NYVLPVNKDTPGSDELFDQVMFVELDREEAQRHLD 443 (688)
Q Consensus 407 ~a---~fE~P~~~~~p~~~EgfdeI~~~el~~~ea~~li~ 443 (688)
.+ .++.. .+ ||.++.++ +.+++.+-|.
T Consensus 148 ~~~~~~~~~~--------~~-fd~vi~n~-~le~~~~~l~ 177 (183)
T PF00625_consen 148 ERAEKEFEHY--------NE-FDYVIVND-DLEEAVKELK 177 (183)
T ss_dssp HHHHHHHGGG--------GG-SSEEEECS-SHHHHHHHHH
T ss_pred HHHHHHHhHh--------hc-CCEEEECc-CHHHHHHHHH
Confidence 22 22211 22 99988774 4444443333
No 77
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.48 E-value=2.6e-07 Score=84.33 Aligned_cols=33 Identities=24% Similarity=0.477 Sum_probs=29.1
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHH
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~I 303 (688)
+|+++|+|||||||+|+.|++.++ +.+|+.|++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~---~~~i~~d~~ 33 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG---FPVISMDDL 33 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT---CEEEEEHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC---CeEEEecce
Confidence 689999999999999999999876 667777875
No 78
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.48 E-value=1.8e-06 Score=92.16 Aligned_cols=124 Identities=19% Similarity=0.233 Sum_probs=82.5
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcC-------CccccCCChHHHH-----------HH
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVP-------GLLRKHNYSERFQ-----------CL 325 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~-------G~~r~~~y~~~~e-----------~l 325 (688)
+.|.+|+++|++||||||+|.+|+..++. -.+|++|.+|+.|+.. +..+. .| ..|. .+
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~--~~vi~~D~~re~~R~~~~~e~~p~L~~S-~Y-~a~~~l~~~~~~~~~~l 165 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGI--RSVIGTDSIREVMRKIISKELLPTLHES-SY-TAWKSLRRPPPPEPPVI 165 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCC--CEEEechHHHHHHHHhcchhhccchhhh-hh-hhhhcccCCCCCchhhh
Confidence 45889999999999999999999999873 2578999999877621 11100 01 0111 11
Q ss_pred HHH------HHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHHhcCC-CE-EEEEeCCHHHHHHHHHHhhccC
Q 005604 326 MGR------ANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KI-AVVVFPKPEDLKIRSVKRFKEM 394 (688)
Q Consensus 326 ~~~------a~~~l~~lie~aL~~G~nVILDaTNl~rs~R~~~l~~~a~~~-~~-~vV~~~~peel~~R~~kR~~~~ 394 (688)
... ....+..++++++++|.++||+..++.+..-+.+. .++. .+ .++++.+.+..++|...|.+..
T Consensus 166 ~g~~~~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~~~~---~~~~~~i~~~l~i~~ee~h~~RF~~R~~~~ 239 (301)
T PRK04220 166 YGFERHVEPVSVGVEAVIERALKEGISVIIEGVHIVPGFIKEKY---LENPNVFMFVLTLSDEEAHKARFYARARVS 239 (301)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHHHhh---hcCCCEEEEEEEECCHHHHHHHHHHHHhhh
Confidence 111 22236778889999999999999999987544311 2233 22 2334466789999988886543
No 79
>PRK14528 adenylate kinase; Provisional
Probab=98.47 E-value=2.1e-06 Score=85.59 Aligned_cols=136 Identities=18% Similarity=0.170 Sum_probs=74.2
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHH-HHHhhcCCccccCCChHHHHHHHH--------HHHHHHHHHH
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMG--------RANAIFDVLL 337 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~I-r~~m~i~G~~r~~~y~~~~e~l~~--------~a~~~l~~li 337 (688)
+.|++.|+|||||||+|+.|++.++ +.+|+.+++ ++.+. .+. ........+++ .+...+...+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~---~~~is~~~~lr~~~~-~~~----~~g~~~~~~~~~g~lvp~~~~~~~~~~~l 73 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLS---IPQISTGDILREAVK-NQT----AMGIEAKRYMDAGDLVPDSVVIGIIKDRI 73 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC---CCeeeCCHHHHHHhh-cCC----HHHHHHHHHHhCCCccCHHHHHHHHHHHH
Confidence 4588999999999999999998876 567777765 44332 111 11111011110 0111121222
Q ss_pred HHHhcCCCeEEEEcCCCCHHHHHHHHHHHhcCC--CEEEEEeCCH-HHHHHHHHHhhccCCC-CCcHHHHHhhhcccc
Q 005604 338 SRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRFKEMGK-EVPADAVNNMLANYV 411 (688)
Q Consensus 338 e~aL~~G~nVILDaTNl~rs~R~~~l~~~a~~~--~~~vV~~~~p-eel~~R~~kR~~~~g~-~Vpeevi~~m~a~fE 411 (688)
.. ......+|||.--.+.++-..+.+.+...+ .-.+|+++++ +++++|+..|....++ +-.+++|.+-.+.|.
T Consensus 74 ~~-~~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~ 150 (186)
T PRK14528 74 RE-ADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYN 150 (186)
T ss_pred hC-cCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHH
Confidence 11 123456999984333333332333333322 2356688887 7999999998543332 234666666555443
No 80
>PLN02674 adenylate kinase
Probab=98.47 E-value=2.2e-06 Score=89.19 Aligned_cols=118 Identities=16% Similarity=0.170 Sum_probs=69.6
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHH-HHhhcCCccccCCChHHHHHHHHHH----HHHHHHHHHHH
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL-EQMKVPGLLRKHNYSERFQCLMGRA----NAIFDVLLSRA 340 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir-~~m~i~G~~r~~~y~~~~e~l~~~a----~~~l~~lie~a 340 (688)
..-|++.|+|||||+|.|+.|++.++ +.+||+++++ +++. .+. ..+.....+++.- ...+..++..+
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~---~~his~GdllR~~i~-~~s----~~g~~i~~~~~~G~lvpd~iv~~lv~~~ 102 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVA-AKT----PLGIKAKEAMDKGELVSDDLVVGIIDEA 102 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcC---CcEEchhHHHHHHHh-ccC----hhhHHHHHHHHcCCccCHHHHHHHHHHH
Confidence 34578899999999999999999987 7889886654 4432 111 1122111111110 01122233333
Q ss_pred hc---CCCeEEEEcCCCCHHHHHHHHHHHhcCC--CEEEEEeCCH-HHHHHHHHHhh
Q 005604 341 SR---TPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF 391 (688)
Q Consensus 341 L~---~G~nVILDaTNl~rs~R~~~l~~~a~~~--~~~vV~~~~p-eel~~R~~kR~ 391 (688)
++ .++.+|||.---+..+-..+-..+...+ .-.+|+++++ +++++|+..|.
T Consensus 103 l~~~~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~ 159 (244)
T PLN02674 103 MKKPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRW 159 (244)
T ss_pred HhCcCcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccc
Confidence 32 3467999986555544443333344333 2356688887 78999999884
No 81
>PRK13947 shikimate kinase; Provisional
Probab=98.45 E-value=2.3e-06 Score=83.07 Aligned_cols=37 Identities=22% Similarity=0.418 Sum_probs=31.9
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHh
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m 307 (688)
-|+++|+|||||||+|+.|++.++ +..|+.|.+++++
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg---~~~id~d~~~~~~ 39 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS---FGFIDTDKEIEKM 39 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC---CCEEECchhhhhh
Confidence 489999999999999999999987 6678888876654
No 82
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.45 E-value=8.3e-07 Score=88.76 Aligned_cols=153 Identities=14% Similarity=0.269 Sum_probs=77.2
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccccCCC----hHHHHHHHH------------
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNY----SERFQCLMG------------ 327 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r~~~y----~~~~e~l~~------------ 327 (688)
+..++|+|+|++||||||+++.|+..++. .+..++.++ |. .. .|......+ ..++..+..
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~-~~~~~~~~t-r~-p~-~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPN-LQLSVSATT-RA-PR-PGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFG 78 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCcc-ceeccCccc-cC-CC-CCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECC
Confidence 35789999999999999999999987651 122222111 11 00 111000000 111111110
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHHhcCCC-EEEEEeCC-HHHHHHHHHHhhccCCCCCcHHHHHh
Q 005604 328 RANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRK-IAVVVFPK-PEDLKIRSVKRFKEMGKEVPADAVNN 405 (688)
Q Consensus 328 ~a~~~l~~lie~aL~~G~nVILDaTNl~rs~R~~~l~~~a~~~~-~~vV~~~~-peel~~R~~kR~~~~g~~Vpeevi~~ 405 (688)
.........++.++..|+.||+|.+.- ....+. ..+.. +.|+++++ .+++.+|+.+| +. .+++++++
T Consensus 79 ~~y~~~~~~i~~~l~~g~~vi~dl~~~---g~~~l~---~~~~~~~~I~i~~~s~~~l~~Rl~~R----~~-~~~~~i~~ 147 (205)
T PRK00300 79 NYYGTPRSPVEEALAAGKDVLLEIDWQ---GARQVK---KKMPDAVSIFILPPSLEELERRLRGR----GT-DSEEVIAR 147 (205)
T ss_pred ccccCcHHHHHHHHHcCCeEEEeCCHH---HHHHHH---HhCCCcEEEEEECcCHHHHHHHHHhc----CC-CCHHHHHH
Confidence 000111334667788999999997521 112212 22222 33444444 47999999998 33 24555555
Q ss_pred hhcccccCCCCCCCCCCCCCcEEEEeccCHHH
Q 005604 406 MLANYVLPVNKDTPGSDELFDQVMFVELDREE 437 (688)
Q Consensus 406 m~a~fE~P~~~~~p~~~EgfdeI~~~el~~~e 437 (688)
..+.+..... ..+.||.++.+. +.++
T Consensus 148 rl~~~~~~~~-----~~~~~d~vi~n~-~~e~ 173 (205)
T PRK00300 148 RLAKAREEIA-----HASEYDYVIVND-DLDT 173 (205)
T ss_pred HHHHHHHHHH-----hHHhCCEEEECC-CHHH
Confidence 4433321111 134578887654 4433
No 83
>PRK13808 adenylate kinase; Provisional
Probab=98.44 E-value=1.5e-06 Score=94.08 Aligned_cols=113 Identities=21% Similarity=0.253 Sum_probs=63.2
Q ss_pred EEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHH-HhhcCCccccCCChHHHHHHH--------HHHHHHHHHHHHH
Q 005604 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE-QMKVPGLLRKHNYSERFQCLM--------GRANAIFDVLLSR 339 (688)
Q Consensus 269 IILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~-~m~i~G~~r~~~y~~~~e~l~--------~~a~~~l~~lie~ 339 (688)
|||.|+|||||||+++.|++.++ +.+|+.+++++ ++. .+. ..+.....++ +.....+...+..
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~yg---l~~is~gdlLR~~i~-~~s----~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~ 74 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYG---IVQLSTGDMLRAAVA-AGT----PVGLKAKDIMASGGLVPDEVVVGIISDRIEQ 74 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC---CceecccHHHHHHhh-cCC----hhhHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 78899999999999999999987 68888766544 321 111 1111111111 0111111112211
Q ss_pred HhcCCCeEEEEcCCCCHHHHHHHHH-HHhcCC--CEEEEEeCCH-HHHHHHHHHhh
Q 005604 340 ASRTPRNFIIDQTNVFKSARKRKLR-LFVNFR--KIAVVVFPKP-EDLKIRSVKRF 391 (688)
Q Consensus 340 aL~~G~nVILDaTNl~rs~R~~~l~-~~a~~~--~~~vV~~~~p-eel~~R~~kR~ 391 (688)
......+|||.---+.++-. .|. .+...+ .-.+|+|+++ +++++|+..|.
T Consensus 75 -~~~~~G~ILDGFPRt~~QA~-~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~ 128 (333)
T PRK13808 75 -PDAANGFILDGFPRTVPQAE-ALDALLKDKQLKLDAVVELRVNEGALLARVETRV 128 (333)
T ss_pred -ccccCCEEEeCCCCCHHHHH-HHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCc
Confidence 12345799998333333333 343 333332 2356678886 79999999873
No 84
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.41 E-value=5.1e-06 Score=82.61 Aligned_cols=133 Identities=23% Similarity=0.255 Sum_probs=71.7
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHH--------HHHHHHHHHHH
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR--------ANAIFDVLLSR 339 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~--------a~~~l~~lie~ 339 (688)
-|++.|+|||||||+|++|++.++ ..+|+++.+.+.-...+ .....+...++++ ...++...+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~---i~hlstgd~~r~~~~~~----t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~ 74 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG---LPHLDTGDILRAAIAER----TELGEEIKKYIDKGELVPDEIVNGLVKERLDE 74 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC---CcEEcHhHHhHhhhccC----ChHHHHHHHHHHcCCccchHHHHHHHHHHHHh
Confidence 378999999999999999999977 78999876544311011 1111111111111 11233333433
Q ss_pred HhcCCCeEEEEcCCCCHHHHHHHHHH-HhcCC--CEEEEEeCCH-HHHHHHHHHhhccCCCCCcHHHHHhhhcccc
Q 005604 340 ASRTPRNFIIDQTNVFKSARKRKLRL-FVNFR--KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYV 411 (688)
Q Consensus 340 aL~~G~nVILDaTNl~rs~R~~~l~~-~a~~~--~~~vV~~~~p-eel~~R~~kR~~~~g~~Vpeevi~~m~a~fE 411 (688)
+ .....||+|.---+..+ .+.++. +.+++ .-.++.|+.+ +.++.|+..|.. ..+-.++++.+....++
T Consensus 75 ~-d~~~~~I~dg~PR~~~q-a~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~--r~dd~~~~~~~R~~~y~ 146 (178)
T COG0563 75 A-DCKAGFILDGFPRTLCQ-ARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV--REDDNEETVKKRLKVYH 146 (178)
T ss_pred h-cccCeEEEeCCCCcHHH-HHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc--cccCCHHHHHHHHHHHH
Confidence 3 22227999984333332 222332 33332 2355577776 688899998832 11223455555444333
No 85
>PRK07261 topology modulation protein; Provisional
Probab=98.40 E-value=4e-07 Score=89.57 Aligned_cols=98 Identities=17% Similarity=0.210 Sum_probs=58.3
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNF 347 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL~~G~nV 347 (688)
-|+++|.|||||||+|+.|++.++ ..+|+.|.+.-. .+ +.... .+.+ ...++.++..+. +
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~---~~~i~~D~~~~~---~~-~~~~~----~~~~--------~~~~~~~~~~~~-w 61 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN---CPVLHLDTLHFQ---PN-WQERD----DDDM--------IADISNFLLKHD-W 61 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC---CCeEecCCEEec---cc-cccCC----HHHH--------HHHHHHHHhCCC-E
Confidence 388999999999999999998765 345655653211 11 10000 1111 123334455555 9
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHHhh
Q 005604 348 IIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (688)
Q Consensus 348 ILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~kR~ 391 (688)
|||+++....... .+. .. -.+|+++.| ++|+.|+.+|.
T Consensus 62 Iidg~~~~~~~~~-~l~---~a--d~vI~Ld~p~~~~~~R~lkR~ 100 (171)
T PRK07261 62 IIDGNYSWCLYEE-RMQ---EA--DQIIFLNFSRFNCLYRAFKRY 100 (171)
T ss_pred EEcCcchhhhHHH-HHH---HC--CEEEEEcCCHHHHHHHHHHHH
Confidence 9999865422221 122 11 146788887 78888888885
No 86
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=98.39 E-value=3e-06 Score=81.00 Aligned_cols=124 Identities=19% Similarity=0.246 Sum_probs=67.2
Q ss_pred EeccCCCChhHHHHHHHhhCCCceEEEEcchHH-HHHhhcCCccccCCChHHHHHHHHH----HHHHHHHHHHHHhc---
Q 005604 271 MVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR--- 342 (688)
Q Consensus 271 LvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~I-r~~m~i~G~~r~~~y~~~~e~l~~~----a~~~l~~lie~aL~--- 342 (688)
+.|+|||||||+|++|++.++ +++|+..++ |+++. .+. ..+.....+++. -...+..+++..+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~---~~~is~~~llr~~~~-~~s----~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~ 72 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG---LVHISVGDLLREEIK-SDS----ELGKQIQEYLDNGELVPDELVIELLKERLEQPP 72 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT---SEEEEHHHHHHHHHH-TTS----HHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGG
T ss_pred CcCCCCCChHHHHHHHHHhcC---cceechHHHHHHHHh-hhh----HHHHHHHHHHHhhccchHHHHHHHHHHHHhhhc
Confidence 589999999999999999986 788888654 44432 110 011111111110 00122233433333
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhcCC--CEEEEEeCCH-HHHHHHHHHhhccCCCCCcHHHHHhhhccc
Q 005604 343 TPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANY 410 (688)
Q Consensus 343 ~G~nVILDaTNl~rs~R~~~l~~~a~~~--~~~vV~~~~p-eel~~R~~kR~~~~g~~Vpeevi~~m~a~f 410 (688)
..+.+|||.--.+..+-..+.+.+.... .-.+|+++++ +++++|+.+ ..++++.+..+.|
T Consensus 73 ~~~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~--------d~~~~i~~Rl~~y 135 (151)
T PF00406_consen 73 CNRGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ--------DNEEVIKKRLEEY 135 (151)
T ss_dssp TTTEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT--------GSHHHHHHHHHHH
T ss_pred ccceeeeeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc--------CCHHHHHHHHHHH
Confidence 4688999985555444443333232232 3367788887 688888776 2245555544444
No 87
>PRK03839 putative kinase; Provisional
Probab=98.39 E-value=8.2e-07 Score=87.30 Aligned_cols=99 Identities=16% Similarity=0.207 Sum_probs=59.1
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNF 347 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL~~G~nV 347 (688)
.|+++|+|||||||+++.|++.++ +.+|+.|++..+..+ +.. +....+.... .+...+...+ .+..|
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~---~~~id~d~~~~~~~~-~~~----~~~~~~~~~~----~l~~~~~~~~-~~~~v 68 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG---YEYVDLTEFALKKGI-GEE----KDDEMEIDFD----KLAYFIEEEF-KEKNV 68 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CcEEehhhhhhhcCC-ccc----CChhhhcCHH----HHHHHHHHhc-cCCCE
Confidence 589999999999999999999987 667888876554321 111 1111111111 1112222222 46679
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHHhh
Q 005604 348 IIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (688)
Q Consensus 348 ILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~kR~ 391 (688)
|+|..+. . + .. .. .+|++.++ +++.+|+.+|.
T Consensus 69 IidG~~~------~-l---~~-~~-~vi~L~~~~~~~~~Rl~~R~ 101 (180)
T PRK03839 69 VLDGHLS------H-L---LP-VD-YVIVLRAHPKIIKERLKERG 101 (180)
T ss_pred EEEeccc------c-c---cC-CC-EEEEEECCHHHHHHHHHHcC
Confidence 9998421 1 1 11 13 35677775 89999999883
No 88
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.39 E-value=7e-06 Score=81.65 Aligned_cols=140 Identities=15% Similarity=0.064 Sum_probs=70.5
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCc--eEEEEcc-------hHHHHHhhcCCccccCCChHHHH-HH---HHHHHHH
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGT-------NLILEQMKVPGLLRKHNYSERFQ-CL---MGRANAI 332 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k--~~vvISt-------D~Ir~~m~i~G~~r~~~y~~~~e-~l---~~~a~~~ 332 (688)
..+|++.|++||||||+++.|.+.+... .++.... +.+++.+ .+.. .... .+. .+ ..+ ...
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~--~~~~--~~~~-~~~~~~~~~~~r-~~~ 76 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFTREPGGTPLGEKLRELL--LDPN--EEMD-DKTELLLFYAAR-AQH 76 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEeeCCCCChHHHHHHHHH--hccc--cCCC-HHHHHHHHHHHH-HHH
Confidence 5799999999999999999998865321 1222111 1122211 1000 0111 111 11 111 223
Q ss_pred HHHHHHHHhcCCCeEEEEcCCCCHHH--------HHHHHHHHhc-----CCCEEEEEeCCH-HHHHHHHHHhhccCCC-C
Q 005604 333 FDVLLSRASRTPRNFIIDQTNVFKSA--------RKRKLRLFVN-----FRKIAVVVFPKP-EDLKIRSVKRFKEMGK-E 397 (688)
Q Consensus 333 l~~lie~aL~~G~nVILDaTNl~rs~--------R~~~l~~~a~-----~~~~~vV~~~~p-eel~~R~~kR~~~~g~-~ 397 (688)
+...+..++..|..||+|..-.+.-. -..|+..+.. ...-.+|+|+++ +++++|+.+|...... .
T Consensus 77 ~~~~i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~~~~~~~ 156 (205)
T PRK00698 77 LEEVIKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGELDRIEQ 156 (205)
T ss_pred HHHHHHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhh
Confidence 34455566788999999932111000 0112222221 123367788775 8999999999421100 1
Q ss_pred CcHHHHHhhhcccc
Q 005604 398 VPADAVNNMLANYV 411 (688)
Q Consensus 398 Vpeevi~~m~a~fE 411 (688)
-+.+.+.++.+.++
T Consensus 157 ~~~~~~~~~~~~y~ 170 (205)
T PRK00698 157 EGLDFFERVREGYL 170 (205)
T ss_pred hhHHHHHHHHHHHH
Confidence 12344555555454
No 89
>PRK06217 hypothetical protein; Validated
Probab=98.38 E-value=3.5e-07 Score=90.52 Aligned_cols=103 Identities=17% Similarity=0.064 Sum_probs=61.6
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRN 346 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL~~G~n 346 (688)
.-|+++|.|||||||+|++|++.++ +.+|+.|.+..+ .+.. ........+.. + .++...+..+..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~---~~~~~~D~~~~~---~~~~-~~~~~~~~~~~-------~-~~~~~~~~~~~~ 66 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLD---IPHLDTDDYFWL---PTDP-PFTTKRPPEER-------L-RLLLEDLRPREG 66 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC---CcEEEcCceeec---cCCC-CccccCCHHHH-------H-HHHHHHHhcCCC
Confidence 3589999999999999999999986 567888875432 1110 00000001111 1 122233445678
Q ss_pred EEEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHHhh
Q 005604 347 FIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (688)
Q Consensus 347 VILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~kR~ 391 (688)
+|||.... . .+. .+..... .+|+++++ +++++|+.+|.
T Consensus 67 ~vi~G~~~-~-~~~----~~~~~~d-~~i~Ld~~~~~~~~Rl~~R~ 105 (183)
T PRK06217 67 WVLSGSAL-G-WGD----PLEPLFD-LVVFLTIPPELRLERLRLRE 105 (183)
T ss_pred EEEEccHH-H-HHH----HHHhhCC-EEEEEECCHHHHHHHHHcCc
Confidence 99996432 1 222 1222112 46788887 89999999986
No 90
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=98.37 E-value=3.5e-06 Score=82.27 Aligned_cols=139 Identities=18% Similarity=0.162 Sum_probs=90.3
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHHh--cCCC
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS--RTPR 345 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL--~~G~ 345 (688)
||+-++.+|+||||+|..|..-+++ |-+|-.|.|- |. ....+++. .+ .+| ....
T Consensus 1 vlvPIAtiGCGKTTva~aL~~LFg~--wgHvQnDnI~------~k--------~~~~f~~~-------~l-~~L~~~~~~ 56 (168)
T PF08303_consen 1 VLVPIATIGCGKTTVALALSNLFGE--WGHVQNDNIT------GK--------RKPKFIKA-------VL-ELLAKDTHP 56 (168)
T ss_pred CEeeecCCCcCHHHHHHHHHHHcCC--CCccccCCCC------CC--------CHHHHHHH-------HH-HHHhhCCCC
Confidence 5778899999999999999988875 7777767542 21 01122222 22 233 5677
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhcCC--------CE---EEEEeCC---H---HHHHHHHHHhhccC-----CC-C--CcH
Q 005604 346 NFIIDQTNVFKSARKRKLRLFVNFR--------KI---AVVVFPK---P---EDLKIRSVKRFKEM-----GK-E--VPA 400 (688)
Q Consensus 346 nVILDaTNl~rs~R~~~l~~~a~~~--------~~---~vV~~~~---p---eel~~R~~kR~~~~-----g~-~--Vpe 400 (688)
.||+|..|....+|++++..+.... .+ ++.|+.. + +.+.+|+.+|-... +. . -=+
T Consensus 57 vViaDRNNh~~reR~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~ 136 (168)
T PF08303_consen 57 VVIADRNNHQKRERKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVE 136 (168)
T ss_pred EEEEeCCCchHHHHHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHH
Confidence 8999999999999999888776521 22 3435432 1 36678888883211 01 0 113
Q ss_pred HHHHhhhcccccCCCCCCCCCCCCCcEEEEec
Q 005604 401 DAVNNMLANYVLPVNKDTPGSDELFDQVMFVE 432 (688)
Q Consensus 401 evi~~m~a~fE~P~~~~~p~~~EgfdeI~~~e 432 (688)
.+++.+.++||+..... .++.+||.|+-.+
T Consensus 137 ~Im~gFi~rfep~~~~~--~pD~~FD~vI~L~ 166 (168)
T PF08303_consen 137 GIMEGFIKRFEPVDPDR--EPDSGFDHVIDLD 166 (168)
T ss_pred HHHHHHHHhcCCCCCCC--CCccccCEeEeCc
Confidence 57778889999766432 3478899987543
No 91
>PRK04040 adenylate kinase; Provisional
Probab=98.36 E-value=2.2e-06 Score=85.84 Aligned_cols=38 Identities=24% Similarity=0.424 Sum_probs=30.3
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHH
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL 304 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir 304 (688)
+++|+++|.|||||||+++.|++.++ ..+.+++.+++.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~-~~~~~~~~g~~~ 39 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK-EDYKIVNFGDVM 39 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc-cCCeEEecchHH
Confidence 57899999999999999999999884 125566666654
No 92
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.35 E-value=3.7e-06 Score=81.11 Aligned_cols=107 Identities=19% Similarity=0.215 Sum_probs=61.5
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhh-cCCccccCCChHHHHHHH---HHHHHHHHHHHHHHhcC
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK-VPGLLRKHNYSERFQCLM---GRANAIFDVLLSRASRT 343 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~-i~G~~r~~~y~~~~e~l~---~~a~~~l~~lie~aL~~ 343 (688)
+|+++|.+||||||+|+.+++.++ +.+++.|.+.+++. ..|.. ...+.... ......+..++......
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg---~~~~~~~~~~~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 73 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS---LKLISAGDIFRELAAKMGLD-----LIEFLNYAEENPEIDKKIDRRIHEIALK 73 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC---CceecHHHHHHHHHHHcCCC-----HHHHHHHHhcCcHHHHHHHHHHHHHHhc
Confidence 799999999999999999999876 66788866544431 12210 01110000 00111222233333335
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHHhh
Q 005604 344 PRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (688)
Q Consensus 344 G~nVILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~kR~ 391 (688)
+.++|||..... ++ +..... .+|++.++ +.+.+|+.+|.
T Consensus 74 ~~~~Vi~g~~~~------~~--~~~~~d-~~v~v~a~~~~r~~R~~~R~ 113 (171)
T TIGR02173 74 EKNVVLESRLAG------WI--VREYAD-VKIWLKAPLEVRARRIAKRE 113 (171)
T ss_pred CCCEEEEecccc------ee--ecCCcC-EEEEEECCHHHHHHHHHHcc
Confidence 678899985431 11 112223 35677776 78889999984
No 93
>PRK04182 cytidylate kinase; Provisional
Probab=98.32 E-value=4.5e-06 Score=81.07 Aligned_cols=107 Identities=18% Similarity=0.180 Sum_probs=59.3
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHh-hcCCccccCCChHHHHHHHH---HHHHHHHHHHHHHhcC
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM-KVPGLLRKHNYSERFQCLMG---RANAIFDVLLSRASRT 343 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m-~i~G~~r~~~y~~~~e~l~~---~a~~~l~~lie~aL~~ 343 (688)
+|+++|.+||||||+|+.|++.++ +.+++.|++.+++ ...|.. ..++....+ .....+...+......
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg---~~~id~~~~~~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG---LKHVSAGEIFRELAKERGMS-----LEEFNKYAEEDPEIDKEIDRRQLEIAEK 73 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC---CcEecHHHHHHHHHHHcCCC-----HHHHHHHhhcCchHHHHHHHHHHHHHhc
Confidence 799999999999999999999887 6678765544332 112221 001100000 0011122222222225
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHHhh
Q 005604 344 PRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (688)
Q Consensus 344 G~nVILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~kR~ 391 (688)
+.++|||..... ++ +... ...+|++.++ +++.+|+.+|.
T Consensus 74 ~~~~Vi~g~~~~------~~--~~~~-~~~~V~l~a~~e~~~~Rl~~r~ 113 (180)
T PRK04182 74 EDNVVLEGRLAG------WM--AKDY-ADLKIWLKAPLEVRAERIAERE 113 (180)
T ss_pred CCCEEEEEeecc------eE--ecCC-CCEEEEEECCHHHHHHHHHhcc
Confidence 567888874321 11 1111 2345678776 78999999884
No 94
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.31 E-value=1.1e-06 Score=82.53 Aligned_cols=118 Identities=15% Similarity=0.160 Sum_probs=62.0
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNF 347 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL~~G~nV 347 (688)
+|+++|.|||||||+|+.|++.++ +.+++.|.+..+.. +. ...+..........+...+.. +..+.++
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~---~~~~~~~~i~~e~~--~~------~~~~~~~~~~i~~~l~~~~~~-~~~~~~~ 68 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG---LPYLDTGGIRTEEV--GK------LASEVAAIPEVRKALDERQRE-LAKKPGI 68 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC---CceeccccCCHHHH--HH------HHHHhcccHhHHHHHHHHHHH-HhhCCCE
Confidence 589999999999999999999876 45666663322100 00 000000001111222223322 3345689
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHHhhccCCCCCcH-HHHHhh
Q 005604 348 IIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFKEMGKEVPA-DAVNNM 406 (688)
Q Consensus 348 ILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~kR~~~~g~~Vpe-evi~~m 406 (688)
|||..... ++ .+. ..-.+|++.++ +...+|+.+|..+.++.++. ++...+
T Consensus 69 Vidg~~~~------~~-~~~--~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~ 120 (147)
T cd02020 69 VLEGRDIG------TV-VFP--DADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEI 120 (147)
T ss_pred EEEeeeee------eE-EcC--CCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 99986431 11 011 11244566665 77888888865433334544 334333
No 95
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.30 E-value=9e-06 Score=79.16 Aligned_cols=104 Identities=21% Similarity=0.297 Sum_probs=63.9
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhh-cCCccc-c-CCC---hHHHHHHHHHHHHHHHHHHHHHh
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK-VPGLLR-K-HNY---SERFQCLMGRANAIFDVLLSRAS 341 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~-i~G~~r-~-~~y---~~~~e~l~~~a~~~l~~lie~aL 341 (688)
+|.+.|+|||||||+|+.|++.++ +.++|+-.++++|- -.|..- + ..+ ..++++.+++. +. ...
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g---l~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD~r------q~-e~a 71 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG---LKLVSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEIDRR------QK-ELA 71 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC---CceeeccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHHHH------HH-HHH
Confidence 688999999999999999999988 67788766666553 123210 0 001 12234443332 22 222
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHHhh
Q 005604 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (688)
Q Consensus 342 ~~G~nVILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~kR~ 391 (688)
+ ..+|||+.-.. -|+.. ....++ ||+.+| ++-.+|+++|+
T Consensus 72 ~-~~nvVlegrLA------~Wi~k--~~adlk-I~L~Apl~vRa~Ria~RE 112 (179)
T COG1102 72 K-EGNVVLEGRLA------GWIVR--EYADLK-IWLKAPLEVRAERIAKRE 112 (179)
T ss_pred H-cCCeEEhhhhH------HHHhc--cccceE-EEEeCcHHHHHHHHHHhc
Confidence 3 77999997311 12321 233444 577777 89999999995
No 96
>PRK14529 adenylate kinase; Provisional
Probab=98.29 E-value=3.5e-06 Score=86.65 Aligned_cols=115 Identities=16% Similarity=0.138 Sum_probs=67.7
Q ss_pred EEEeccCCCChhHHHHHHHhhCCCceEEEEcchH-HHHHhhcCCccccCCChHHHHHHHHHHH----HHHHHHHHHHhcC
Q 005604 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL-ILEQMKVPGLLRKHNYSERFQCLMGRAN----AIFDVLLSRASRT 343 (688)
Q Consensus 269 IILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~-Ir~~m~i~G~~r~~~y~~~~e~l~~~a~----~~l~~lie~aL~~ 343 (688)
|+|.|+|||||||+|+.|++.+. +..||+.+ +|+++. .+. ........++..-. +....++...++.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~---~~~is~gdllr~~i~-~~t----~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~ 74 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYD---LAHIESGAIFREHIG-GGT----ELGKKAKEYIDRGDLVPDDITIPMILETLKQ 74 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC---CCCcccchhhhhhcc-CCC----hHHHHHHHHHhccCcchHHHHHHHHHHHHhc
Confidence 78899999999999999999887 55676544 444321 111 11222222221100 1122233333322
Q ss_pred --CCeEEEEcCCCCHHHHHHHHHHHhcCC--CEEEEEeCCH-HHHHHHHHHhh
Q 005604 344 --PRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF 391 (688)
Q Consensus 344 --G~nVILDaTNl~rs~R~~~l~~~a~~~--~~~vV~~~~p-eel~~R~~kR~ 391 (688)
.+.+|||.---+..+-..+...+.+.+ .-.+|+++++ +++++|+..|.
T Consensus 75 ~~~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~ 127 (223)
T PRK14529 75 DGKNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRR 127 (223)
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCc
Confidence 567999996666555554444444433 2357788887 79999999884
No 97
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.29 E-value=4.2e-06 Score=86.39 Aligned_cols=113 Identities=20% Similarity=0.188 Sum_probs=65.4
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHH-hhcCCccccCCChHHHHHHHHH--------HHHHHHHHHH
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ-MKVPGLLRKHNYSERFQCLMGR--------ANAIFDVLLS 338 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~-m~i~G~~r~~~y~~~~e~l~~~--------a~~~l~~lie 338 (688)
-|++.|+|||||||+|+.|++.++ +.+|++|++.++ +...+ ..+.....++.. ....+...+.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g---~~~is~gdllr~~~~~~t-----~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~ 79 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKEN---LKHINMGNILREEIKAKT-----TIGKEIQKVVTSGNLVPDNLVIAIVKDEIA 79 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC---CcEEECChHHHHHhhcCC-----hHHHHHHHHHHcCCcCCHHHHHHHHHHHHH
Confidence 388999999999999999999987 788888775543 32111 111111111110 1111222222
Q ss_pred HH-hcCCCeEEEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHHhh
Q 005604 339 RA-SRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (688)
Q Consensus 339 ~a-L~~G~nVILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~kR~ 391 (688)
.. ....+.+|||.---+..++.. +..+ .....+++++.+ +++++|+..|.
T Consensus 80 ~~~~~~~~g~iLDGfPRt~~Qa~~-l~~~--~~~~~vi~l~~~~~~~~~Rl~~Rr 131 (229)
T PTZ00088 80 KVTDDCFKGFILDGFPRNLKQCKE-LGKI--TNIDLFVNIYLPRNILIKKLLGRR 131 (229)
T ss_pred hhccccCceEEEecCCCCHHHHHH-HHhc--CCCCEEEEEeCCHHHHHHHHHcCc
Confidence 21 134578999995455444443 3322 123356678887 68899999884
No 98
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.28 E-value=1.2e-05 Score=79.15 Aligned_cols=108 Identities=14% Similarity=0.165 Sum_probs=61.1
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccccCCChHH--HHHHHHHHHHHHHHHHHHHhcC
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSER--FQCLMGRANAIFDVLLSRASRT 343 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r~~~y~~~--~e~l~~~a~~~l~~lie~aL~~ 343 (688)
...|+++|++||||||+++.|++.++ +..+++|..+++. .|..- ..+... +..+.+...+ +++.+..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~---~~~vd~D~~i~~~--~g~~i-~~~~~~~g~~~fr~~e~~----~l~~l~~- 72 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN---MEFYDSDQEIEKR--TGADI-GWVFDVEGEEGFRDREEK----VINELTE- 72 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC---CcEEECCchHHHH--hCcCH-hHHHHHhCHHHHHHHHHH----HHHHHHh-
Confidence 45799999999999999999999876 5678888655543 23100 000000 1111222122 3333222
Q ss_pred CCeEEEEcC---CCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHHh
Q 005604 344 PRNFIIDQT---NVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKR 390 (688)
Q Consensus 344 G~nVILDaT---Nl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~kR 390 (688)
...+||... -+....|.. + ...+ .+||++.+ +++.+|+..+
T Consensus 73 ~~~~vi~~ggg~v~~~~~~~~-l---~~~~--~vv~L~~~~e~~~~Ri~~~ 117 (172)
T PRK05057 73 KQGIVLATGGGSVKSRETRNR-L---SARG--VVVYLETTIEKQLARTQRD 117 (172)
T ss_pred CCCEEEEcCCchhCCHHHHHH-H---HhCC--EEEEEeCCHHHHHHHHhCC
Confidence 345666542 233344432 3 3322 57789886 8999999765
No 99
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=98.28 E-value=1.3e-05 Score=80.70 Aligned_cols=38 Identities=18% Similarity=0.216 Sum_probs=32.0
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHh
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m 307 (688)
.+|.++|.+||||||+++.+.+.++ +.+|+.|.+.+++
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g---~~~i~~D~~~~~~ 39 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKG---IPILDADIYAREA 39 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC---CeEeeCcHHHHHH
Confidence 4799999999999999999988655 6788999876553
No 100
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.28 E-value=2e-05 Score=78.05 Aligned_cols=123 Identities=17% Similarity=0.082 Sum_probs=65.5
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCce--EEEEc----c---hHHHHHhhcCCccccCCChHHHH-HHHHH-HHHHHH
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKR--YILLG----T---NLILEQMKVPGLLRKHNYSERFQ-CLMGR-ANAIFD 334 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~--~vvIS----t---D~Ir~~m~i~G~~r~~~y~~~~e-~l~~~-a~~~l~ 334 (688)
..+|++.|++||||||+++.|++.+...+ ++++. + +.+++.+ ..+. ......... .+... ....+.
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~i~~~~-~~~~--~~~~~~~~~~~l~~~~r~~~~~ 79 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREPGGTPIGEKIRELL-LNEN--DEPLTDKAEALLFAADRHEHLE 79 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHH-cCCC--ccCCCHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999998875432 22221 1 2233221 1111 011111111 11111 112334
Q ss_pred HHHHHHhcCCCeEEEEcCCCCHHH-----H---HHHHHHHhc-C---CCEEEEEeCCH-HHHHHHHHHhh
Q 005604 335 VLLSRASRTPRNFIIDQTNVFKSA-----R---KRKLRLFVN-F---RKIAVVVFPKP-EDLKIRSVKRF 391 (688)
Q Consensus 335 ~lie~aL~~G~nVILDaTNl~rs~-----R---~~~l~~~a~-~---~~~~vV~~~~p-eel~~R~~kR~ 391 (688)
..+..++..+..||+|....+.-. | ..++..+.. . ..-.+|+++++ +++++|+.+|.
T Consensus 80 ~~i~~~l~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~ 149 (195)
T TIGR00041 80 DKIKPALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRG 149 (195)
T ss_pred HHHHHHHhCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 456667788999999953221100 0 122333322 1 12356688876 89999999884
No 101
>PRK08118 topology modulation protein; Reviewed
Probab=98.25 E-value=2.4e-06 Score=83.84 Aligned_cols=97 Identities=16% Similarity=0.185 Sum_probs=58.0
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNF 347 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL~~G~nV 347 (688)
-|+++|+|||||||+|+.|++.+. ..+++.|.+... .| +. .... +. +..+++.++ ++..+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~---~~~~~lD~l~~~---~~-w~--~~~~--~~--------~~~~~~~~~-~~~~w 62 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN---IPVHHLDALFWK---PN-WE--GVPK--EE--------QITVQNELV-KEDEW 62 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CCceecchhhcc---cC-Cc--CCCH--HH--------HHHHHHHHh-cCCCE
Confidence 489999999999999999999887 456667865432 11 00 0011 11 111222333 34679
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHHhh
Q 005604 348 IIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (688)
Q Consensus 348 ILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~kR~ 391 (688)
|||.... .....+ +. . .-.+|+++.| +.|..|+.+|.
T Consensus 63 VidG~~~-~~~~~~-l~---~--~d~vi~Ld~p~~~~~~R~~~R~ 100 (167)
T PRK08118 63 IIDGNYG-GTMDIR-LN---A--ADTIIFLDIPRTICLYRAFKRR 100 (167)
T ss_pred EEeCCcc-hHHHHH-HH---h--CCEEEEEeCCHHHHHHHHHHHH
Confidence 9998633 222111 11 1 1256788888 78888888884
No 102
>PRK13948 shikimate kinase; Provisional
Probab=98.23 E-value=6.5e-06 Score=82.14 Aligned_cols=107 Identities=18% Similarity=0.222 Sum_probs=64.2
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCcc-ccC--CChH-HHHHHHHHHHHHHHHHHHH
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL-RKH--NYSE-RFQCLMGRANAIFDVLLSR 339 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~-r~~--~y~~-~~e~l~~~a~~~l~~lie~ 339 (688)
+.+..|+|+|++||||||+++.|++.++ +..|.+|.+++++ .|.. .+. .+++ .|..+. ..+++.
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg---~~~iD~D~~ie~~--~g~si~~if~~~Ge~~fR~~E-------~~~l~~ 75 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALM---LHFIDTDRYIERV--TGKSIPEIFRHLGEAYFRRCE-------AEVVRR 75 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcC---CCEEECCHHHHHH--HhCCHHHHHHHhCHHHHHHHH-------HHHHHH
Confidence 3578999999999999999999999887 5677889777654 2321 000 0111 111111 123333
Q ss_pred HhcCCCeEEEE---cCCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHH
Q 005604 340 ASRTPRNFIID---QTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVK 389 (688)
Q Consensus 340 aL~~G~nVILD---aTNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~k 389 (688)
++..+ ..||. .+.+..+.|.. + .+. -.+|++..+ +++.+|+..
T Consensus 76 l~~~~-~~VIa~GgG~v~~~~n~~~-l---~~~--g~vV~L~~~~e~l~~Rl~~ 122 (182)
T PRK13948 76 LTRLD-YAVISLGGGTFMHEENRRK-L---LSR--GPVVVLWASPETIYERTRP 122 (182)
T ss_pred HHhcC-CeEEECCCcEEcCHHHHHH-H---HcC--CeEEEEECCHHHHHHHhcC
Confidence 34444 44555 46666666554 2 232 246677775 899999853
No 103
>PRK06547 hypothetical protein; Provisional
Probab=98.22 E-value=3.1e-06 Score=83.65 Aligned_cols=114 Identities=18% Similarity=0.119 Sum_probs=65.0
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHH---------
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFD--------- 334 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~--------- 334 (688)
..+.+|+++|++||||||+|+.|++.++ +.+|+.|.+.... .+. ....+.+.+.....-.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~---~~~~~~d~~~~~~--~~~------~~~~~~l~~~~l~~g~~~~~~yd~~ 81 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTG---FQLVHLDDLYPGW--HGL------AAASEHVAEAVLDEGRPGRWRWDWA 81 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC---CCeecccceeccc--ccC------ChHHHHHHHHHHhCCCCceecCCCC
Confidence 3578999999999999999999998875 5677777543210 010 0011111111100000
Q ss_pred -H-HHH-HHhcCCCeEEEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHHhh
Q 005604 335 -V-LLS-RASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (688)
Q Consensus 335 -~-lie-~aL~~G~nVILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~kR~ 391 (688)
. ... ..+..+..||+|.+.......+ ..+.+...+.+|+++++ +++++|..+|.
T Consensus 82 ~~~~~~~~~l~~~~vVIvEG~~al~~~~r---~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd 139 (172)
T PRK06547 82 NNRPGDWVSVEPGRRLIIEGVGSLTAANV---ALASLLGEVLTVWLDGPEALRKERALARD 139 (172)
T ss_pred CCCCCCcEEeCCCCeEEEEehhhccHHHH---HHhccCCCEEEEEEECCHHHHHHHHHhcC
Confidence 0 000 0122456788999866533222 22223235678899987 89999999994
No 104
>PRK13973 thymidylate kinase; Provisional
Probab=98.22 E-value=1.9e-05 Score=80.37 Aligned_cols=123 Identities=18% Similarity=0.119 Sum_probs=69.5
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcc---------hHHHHHhhcCCccccCCChHHHHHHHHHHH--HHHH
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT---------NLILEQMKVPGLLRKHNYSERFQCLMGRAN--AIFD 334 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvISt---------D~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~--~~l~ 334 (688)
+.+|++.|++||||||.++.|++.+..+++.++.+ +.||+.+. .+. ...+...-+.+.-.+. ..+.
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~-~~~--~~~~~~~~~~ll~~a~r~~~~~ 79 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLL-SGA--AELYGPRMEALLFAAARDDHVE 79 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHc-CCC--ccCCCHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999998875333333322 34444331 111 0112221122221111 2334
Q ss_pred HHHHHHhcCCCeEEEEcCCCC----HHHH----HHHHHHHh----cC-CCEEEEEeCCH-HHHHHHHHHhh
Q 005604 335 VLLSRASRTPRNFIIDQTNVF----KSAR----KRKLRLFV----NF-RKIAVVVFPKP-EDLKIRSVKRF 391 (688)
Q Consensus 335 ~lie~aL~~G~nVILDaTNl~----rs~R----~~~l~~~a----~~-~~~~vV~~~~p-eel~~R~~kR~ 391 (688)
.++..++++|..||.|.-..+ ...+ ..|+..+. +. ..-.+++++++ +++++|+.+|.
T Consensus 80 ~~i~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~ 150 (213)
T PRK13973 80 EVIRPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRR 150 (213)
T ss_pred HHHHHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence 566778899999999963211 0000 11233322 11 23466788887 78999999885
No 105
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.22 E-value=7.2e-06 Score=82.65 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=33.1
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~I 303 (688)
++.+|.++|.+||||||+++.|.+.+....+.+|+.|..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~ 43 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSY 43 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcc
Confidence 588999999999999999999999885444677888764
No 106
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.21 E-value=1.7e-05 Score=77.18 Aligned_cols=108 Identities=20% Similarity=0.240 Sum_probs=61.1
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCc-cccCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGL-LRKHNYSERFQCLMGRANAIFDVLLSRASRTPR 345 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~-~r~~~y~~~~e~l~~~a~~~l~~lie~aL~~G~ 345 (688)
+.|+++|++||||||+|+.|++.++ +..++.|.+.+... |. ..+......|+.+.+...+ +++ .+..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg---~~~~d~D~~~~~~~--g~~~~~~~~~~g~~~~~~~e~~----~~~-~~~~~- 71 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG---YRFVDTDQWLQSTS--NMTVAEIVEREGWAGFRARESA----ALE-AVTAP- 71 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC---CCEEEccHHHHHHh--CCCHHHHHHHHCHHHHHHHHHH----HHH-HhcCC-
Confidence 4688899999999999999999887 66788898776542 21 0000001113333332222 222 23333
Q ss_pred eEEEEcC-C-C-CHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHHhh
Q 005604 346 NFIIDQT-N-V-FKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (688)
Q Consensus 346 nVILDaT-N-l-~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~kR~ 391 (688)
.+||... . + ....|. ++ ... . .+|+++.+ +++.+|+.+|.
T Consensus 72 ~~vi~~ggg~vl~~~~~~-~l---~~~-~-~~v~l~~~~~~~~~Rl~~r~ 115 (171)
T PRK03731 72 STVIATGGGIILTEENRH-FM---RNN-G-IVIYLCAPVSVLANRLEANP 115 (171)
T ss_pred CeEEECCCCccCCHHHHH-HH---HhC-C-EEEEEECCHHHHHHHHcccc
Confidence 3455532 2 2 222232 23 222 2 35677776 78899998874
No 107
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=98.20 E-value=3.7e-05 Score=77.09 Aligned_cols=38 Identities=18% Similarity=0.224 Sum_probs=31.6
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHh
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m 307 (688)
+.+|.++|.+||||||+++.|.+ ++ +.+|+.|.+.+++
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~g---~~~i~~D~~~~~~ 39 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-LG---APVIDADAIAHEV 39 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-cC---CEEEEecHHHHHH
Confidence 35899999999999999999987 55 6788899875543
No 108
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=98.18 E-value=2.3e-05 Score=77.40 Aligned_cols=106 Identities=19% Similarity=0.208 Sum_probs=62.6
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccccCCChH-HHHHHHHHHHHHHHHHHHHHhcCCCe
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRASRTPRN 346 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r~~~y~~-~~e~l~~~a~~~l~~lie~aL~~G~n 346 (688)
=|+|+|++||||||+.+.|++.+. +-.+.+|.+.++- .|..=..-|.. -|+...+.= ...++.++..+ +
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~---~~F~D~D~~Ie~~--~g~sI~eIF~~~GE~~FR~~E----~~vl~~l~~~~-~ 73 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALN---LPFIDTDQEIEKR--TGMSIAEIFEEEGEEGFRRLE----TEVLKELLEED-N 73 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcC---CCcccchHHHHHH--HCcCHHHHHHHHhHHHHHHHH----HHHHHHHhhcC-C
Confidence 489999999999999999999998 5678888776652 23100000110 112221111 12344444455 4
Q ss_pred EEEEc---CCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHH
Q 005604 347 FIIDQ---TNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVK 389 (688)
Q Consensus 347 VILDa---TNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~k 389 (688)
.||-. +-+..+.|.. + ++. -.+||++++ |++.+|+..
T Consensus 74 ~ViaTGGG~v~~~enr~~-l---~~~--g~vv~L~~~~e~l~~Rl~~ 114 (172)
T COG0703 74 AVIATGGGAVLSEENRNL-L---KKR--GIVVYLDAPFETLYERLQR 114 (172)
T ss_pred eEEECCCccccCHHHHHH-H---HhC--CeEEEEeCCHHHHHHHhcc
Confidence 55552 4455555553 2 332 267788886 899999983
No 109
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=98.18 E-value=1.1e-05 Score=79.89 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.5
Q ss_pred EEEEeccCCCChhHHHHHHHhhCC
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
+|++.|++||||||+++.|.+.++
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~ 24 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLG 24 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998754
No 110
>PLN02459 probable adenylate kinase
Probab=98.17 E-value=1.2e-05 Score=84.52 Aligned_cols=114 Identities=20% Similarity=0.167 Sum_probs=64.7
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchH-HHHHhhcCCccccCCChHHHHHHHHHHH----HHHHHHHHHHh
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL-ILEQMKVPGLLRKHNYSERFQCLMGRAN----AIFDVLLSRAS 341 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~-Ir~~m~i~G~~r~~~y~~~~e~l~~~a~----~~l~~lie~aL 341 (688)
..|+++|.|||||||+|+.|++.++ +.+|++.+ +|+++. .+. ..+.....++++-. ..+..+++..+
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~---~~~is~gdllR~ei~-~~t----~lg~~i~~~~~~G~lVPdeiv~~ll~~~l 101 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLG---VPHIATGDLVREEIK-SSG----PLGAQLKEIVNQGKLVPDEIIFSLLSKRL 101 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC---CcEEeCcHHHHHHHh-ccc----hhHHHHHHHHHcCCccCHHHHHHHHHHHH
Confidence 3477789999999999999999887 67887754 555543 111 11111111111100 11222333333
Q ss_pred c-----CCCeEEEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHHhh
Q 005604 342 R-----TPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (688)
Q Consensus 342 ~-----~G~nVILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~kR~ 391 (688)
. ..+.+|||.---+..+ ...+..+. .--.+|+|+++ +++++|+..|.
T Consensus 102 ~~~~~~~~~g~iLDGFPRt~~Q-a~~Le~~~--~id~Vi~L~v~d~~l~~Rl~gR~ 154 (261)
T PLN02459 102 EAGEEEGESGFILDGFPRTVRQ-AEILEGVT--DIDLVVNLKLREEVLVEKCLGRR 154 (261)
T ss_pred hcccccCCceEEEeCCCCCHHH-HHHHHhcC--CCCEEEEEECCHHHHHHHhhccc
Confidence 2 3467999984444333 22333221 22356788887 78899999884
No 111
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.15 E-value=2.5e-05 Score=77.58 Aligned_cols=153 Identities=16% Similarity=0.199 Sum_probs=81.1
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhc------------CCc--cccC-C----------Ch--H
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKV------------PGL--LRKH-N----------YS--E 320 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i------------~G~--~r~~-~----------y~--~ 320 (688)
+|.++|.+||||||+++.|.+..+ +.+|+.|.+.+++-. +|. .... . +. .
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~---~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~ 77 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYH---FPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPE 77 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcC---CeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHH
Confidence 478999999999999999987653 678899987544321 121 0000 0 00 0
Q ss_pred HHHHHHHH----HHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHHhhccCC
Q 005604 321 RFQCLMGR----ANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFKEMG 395 (688)
Q Consensus 321 ~~e~l~~~----a~~~l~~lie~aL~~G~nVILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~kR~~~~g 395 (688)
.+.++... +.+.+...+......|..||++.-.+... . + ...-. .++++.++ +++++|+.+|.
T Consensus 78 ~~~~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~---~-~---~~~~D-~vv~V~~~~~~~~~Rl~~R~---- 145 (188)
T TIGR00152 78 ELKWLNNLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFEN---K-L---RSLCD-RVIVVDVSPQLQLERLMQRD---- 145 (188)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhC---C-c---HHhCC-EEEEEECCHHHHHHHHHHcC----
Confidence 11111110 11122223322223456788887544321 0 1 11111 35567776 79999999983
Q ss_pred CCCc-HHHHHhhhcccccCCCCCCCCCCCCCcEEEEeccCHHHHHHHH
Q 005604 396 KEVP-ADAVNNMLANYVLPVNKDTPGSDELFDQVMFVELDREEAQRHL 442 (688)
Q Consensus 396 ~~Vp-eevi~~m~a~fE~P~~~~~p~~~EgfdeI~~~el~~~ea~~li 442 (688)
..+ +++..++.... +.. ......|.++.++-+.++.++.+
T Consensus 146 -~~s~~~~~~r~~~q~--~~~----~~~~~ad~vI~N~~~~e~l~~~~ 186 (188)
T TIGR00152 146 -NLTEEEVQKRLASQM--DIE----ERLARADDVIDNSATLADLVKQL 186 (188)
T ss_pred -CCCHHHHHHHHHhcC--CHH----HHHHhCCEEEECCCCHHHHHHHH
Confidence 244 44444444443 221 01345777777776766665544
No 112
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.15 E-value=2.4e-05 Score=80.97 Aligned_cols=127 Identities=16% Similarity=0.216 Sum_probs=86.4
Q ss_pred CCCcceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhh-cCCc--cc--cCCChHHHHH------------
Q 005604 262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK-VPGL--LR--KHNYSERFQC------------ 324 (688)
Q Consensus 262 ~~~~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~-i~G~--~r--~~~y~~~~e~------------ 324 (688)
.++.+.+|++-|.||.||||+|..++.+++- -.+|++|.||+-|+ +.+. .. .......|+.
T Consensus 85 ~~~~p~IILIGGasGVGkStIA~ElA~rLgI--~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piia 162 (299)
T COG2074 85 KMKRPLIILIGGASGVGKSTIAGELARRLGI--RSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIA 162 (299)
T ss_pred ccCCCeEEEecCCCCCChhHHHHHHHHHcCC--ceeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhh
Confidence 3457899999999999999999999999984 35789999999886 2331 00 0001123322
Q ss_pred -HHHHHH---HHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHHHhhcc
Q 005604 325 -LMGRAN---AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRK-IAVVVFPKPEDLKIRSVKRFKE 393 (688)
Q Consensus 325 -l~~~a~---~~l~~lie~aL~~G~nVILDaTNl~rs~R~~~l~~~a~~~~-~~vV~~~~peel~~R~~kR~~~ 393 (688)
+.+++. --+...+++|+..|.++||+..++-+..-+. +.+ +.+- ..++++.++++.+.|..+|...
T Consensus 163 GF~dqa~~V~~GI~~VI~RAi~eG~~lIIEGvHlVPg~i~~--~~~-~~n~~~~~l~i~dee~Hr~RF~~R~~~ 233 (299)
T COG2074 163 GFEDQASAVMVGIEAVIERAIEEGEDLIIEGVHLVPGLIKE--EAL-GNNVFMFMLYIADEELHRERFYDRIRY 233 (299)
T ss_pred hHHHHhHHHHHHHHHHHHHHHhcCcceEEEeeeeccccccH--hhh-ccceEEEEEEeCCHHHHHHHHHHHHHH
Confidence 122322 2456788999999999999999998775543 111 2222 2444567778899999888643
No 113
>PRK13949 shikimate kinase; Provisional
Probab=98.14 E-value=1.5e-05 Score=78.39 Aligned_cols=36 Identities=19% Similarity=0.417 Sum_probs=30.7
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHH
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ 306 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~ 306 (688)
-|+++|+|||||||+++.|++.+. +..|++|.+.++
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~---~~~id~D~~i~~ 38 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG---LSFIDLDFFIEN 38 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC---CCeecccHHHHH
Confidence 489999999999999999999987 677888876543
No 114
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=98.12 E-value=5.1e-05 Score=76.99 Aligned_cols=159 Identities=18% Similarity=0.171 Sum_probs=84.5
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhh------------cCCc--cc-c--CC--Ch------
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK------------VPGL--LR-K--HN--YS------ 319 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~------------i~G~--~r-~--~~--y~------ 319 (688)
.+.+|.++|.+||||||+++.|.+ ++ +.++++|.+.+++- ++|. .. . .. ..
T Consensus 4 ~~~~igitG~igsGKSt~~~~l~~-~g---~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~ 79 (208)
T PRK14731 4 LPFLVGVTGGIGSGKSTVCRFLAE-MG---CELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQ 79 (208)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-CC---CeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHH
Confidence 357889999999999999999985 44 67888886654431 1121 00 0 00 00
Q ss_pred ------HHHHHHHH----HHHHHHHHHHHHHhcCC-CeEEEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHH
Q 005604 320 ------ERFQCLMG----RANAIFDVLLSRASRTP-RNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRS 387 (688)
Q Consensus 320 ------~~~e~l~~----~a~~~l~~lie~aL~~G-~nVILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~ 387 (688)
...+++.. .+...+++.++.+...+ ..||+|...+..... .. ..-.++++.++ +++++|+
T Consensus 80 ~vf~~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e~pLL~e~~~-------~~-~~d~ii~V~a~~e~~~~Rl 151 (208)
T PRK14731 80 VVFSDPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKEAAILFESGG-------DA-GLDFIVVVAADTELRLERA 151 (208)
T ss_pred HHhCCHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEEeeeeeecCc-------hh-cCCeEEEEECCHHHHHHHH
Confidence 00011111 11122333343444444 467788865532110 00 11245667776 7999999
Q ss_pred HHhhccCCCCCcHHHHHhhhcccccCCCCCCCCCCCCCcEEEEeccCHHHHHHHHHHH
Q 005604 388 VKRFKEMGKEVPADAVNNMLANYVLPVNKDTPGSDELFDQVMFVELDREEAQRHLDEM 445 (688)
Q Consensus 388 ~kR~~~~g~~Vpeevi~~m~a~fE~P~~~~~p~~~EgfdeI~~~el~~~ea~~li~~~ 445 (688)
.+| +..-.+++..++...+..-.. .+..|.++.++-+.++.++-++++
T Consensus 152 ~~R----~~~s~e~~~~Ri~~q~~~~~~------~~~ad~vI~N~g~~e~l~~~i~~~ 199 (208)
T PRK14731 152 VQR----GMGSREEIRRRIAAQWPQEKL------IERADYVIYNNGTLDELKAQTEQL 199 (208)
T ss_pred HHc----CCCCHHHHHHHHHHcCChHHH------HHhCCEEEECCCCHHHHHHHHHHH
Confidence 999 332234555555443321111 244677777766666655555443
No 115
>PRK14526 adenylate kinase; Provisional
Probab=98.09 E-value=2.4e-05 Score=79.80 Aligned_cols=112 Identities=21% Similarity=0.262 Sum_probs=61.7
Q ss_pred EEEeccCCCChhHHHHHHHhhCCCceEEEEcchHH-HHHhhcCCccccCCChHHHHHHHHHH----HHHHHHHHHHHh--
Q 005604 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMGRA----NAIFDVLLSRAS-- 341 (688)
Q Consensus 269 IILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~I-r~~m~i~G~~r~~~y~~~~e~l~~~a----~~~l~~lie~aL-- 341 (688)
|+++|.|||||||+++.|++.++ +.+|+++++ |+++. .+. ..+.....+++.- ......++...+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~---~~~is~G~llr~~~~-~~t----~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~ 74 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELN---YYHISTGDLFRENIL-NST----PLGKEIKQIVENGQLVPDSITIKIVEDKINT 74 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC---CceeecChHHHHhcc-cCC----hhhHHHHHHHHcCccCChHHHHHHHHHHHhc
Confidence 67899999999999999998876 667877655 44332 111 1111111111100 011112232332
Q ss_pred -cCCCeEEEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHHhh
Q 005604 342 -RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (688)
Q Consensus 342 -~~G~nVILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~kR~ 391 (688)
.....+|||.---+..+- ..+..+ .....+++|.++ +++++|+..|.
T Consensus 75 ~~~~~g~ilDGfPR~~~Qa-~~l~~~--~~~~~vi~l~~~~~~~~~Rl~~R~ 123 (211)
T PRK14526 75 IKNNDNFILDGFPRNINQA-KALDKF--LPNIKIINFLIDEELLIKRLSGRR 123 (211)
T ss_pred ccccCcEEEECCCCCHHHH-HHHHHh--cCCCEEEEEECCHHHHHHHHHCCC
Confidence 235679999743443332 233322 123456666665 78999999884
No 116
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=98.09 E-value=0.00011 Score=74.91 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=21.9
Q ss_pred EEEEeccCCCChhHHHHHHHhhCC
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
+|++-|.-||||||+++.|++.+.
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~ 24 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLG 24 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998775
No 117
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.07 E-value=2.3e-05 Score=79.14 Aligned_cols=39 Identities=21% Similarity=0.197 Sum_probs=32.0
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchH
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~ 302 (688)
+.+.+|.++|++||||||+++.|...++.....+|+.|.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~ 42 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDN 42 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccc
Confidence 468999999999999999999999876533356777775
No 118
>PRK08233 hypothetical protein; Provisional
Probab=98.07 E-value=2.4e-05 Score=76.21 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=24.8
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCC
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPE 292 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~ 292 (688)
+.+|++.|.|||||||+|+.|++.++.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~ 29 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKN 29 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 579999999999999999999998864
No 119
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=98.07 E-value=1.5e-05 Score=76.63 Aligned_cols=114 Identities=18% Similarity=0.165 Sum_probs=66.5
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCCC--ceEEEEcchHHHHHhhcCCccccCCChHH-HHHHHHHHHHHHHHHHHHH
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMKVPGLLRKHNYSER-FQCLMGRANAIFDVLLSRA 340 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~~--k~~vvIStD~Ir~~m~i~G~~r~~~y~~~-~e~l~~~a~~~l~~lie~a 340 (688)
.+..+|+|+||+||||||+|-+|.+.+-. +...++.-|.+| +|..++-.|..+ ..+-+.+. ....+..
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvR-----hGLN~DL~F~a~dR~ENIRRi----geVaKLF 99 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVR-----HGLNKDLGFKAEDRNENIRRI----GEVAKLF 99 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccc-----cccccccCcchhhhhhhHHHH----HHHHHHH
Confidence 35789999999999999999988776543 335677777765 343222223221 11111111 1122223
Q ss_pred hcCCCeEEEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHH
Q 005604 341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRS 387 (688)
Q Consensus 341 L~~G~nVILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~ 387 (688)
.+.|..-|-.-...++..|.+ -+.+-....|.-||+++| +.|.+|.
T Consensus 100 ADag~iciaSlISPYR~dRda-cRel~~~~~FiEvfmdvpl~vcE~RD 146 (207)
T KOG0635|consen 100 ADAGVICIASLISPYRKDRDA-CRELLPEGDFIEVFMDVPLEVCEARD 146 (207)
T ss_pred hccceeeeehhcCchhccHHH-HHHhccCCCeEEEEecCcHHHhhccC
Confidence 455655554444555566665 333333347888899998 7887764
No 120
>PLN02422 dephospho-CoA kinase
Probab=98.06 E-value=7e-05 Score=77.57 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=30.5
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHh
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m 307 (688)
.+|.++|.+||||||+++.|. +.+ +.+|++|.+.+++
T Consensus 2 ~~igltG~igsGKstv~~~l~-~~g---~~~idaD~~~~~l 38 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFK-SSG---IPVVDADKVARDV 38 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HCC---CeEEehhHHHHHH
Confidence 479999999999999999998 444 7889999775543
No 121
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.05 E-value=3.6e-05 Score=82.80 Aligned_cols=114 Identities=13% Similarity=0.138 Sum_probs=61.1
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccccCCChH-HHHHHHHHHHHHHHHHHHHHhcC
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRASRT 343 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r~~~y~~-~~e~l~~~a~~~l~~lie~aL~~ 343 (688)
....|+|+|+|||||||+++.|++.++ +..|..|..+++. .|..-...+.. .++.+.+.-. .++..++..
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~Lg---~~~id~D~~i~~~--~G~~i~ei~~~~G~~~fr~~e~----~~l~~ll~~ 202 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARLG---VPFVELNREIERE--AGLSVSEIFALYGQEGYRRLER----RALERLIAE 202 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC---CCEEeHHHHHHHH--hCCCHHHHHHHHCHHHHHHHHH----HHHHHHHhh
Confidence 356899999999999999999999887 5556777655542 33210000000 0111111111 223333333
Q ss_pred CCeEEEEc-CCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHHhh
Q 005604 344 PRNFIIDQ-TNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (688)
Q Consensus 344 G~nVILDa-TNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~kR~ 391 (688)
...+||.. ..+..... .+..+.. ...+||+.++ +++.+|+.+|.
T Consensus 203 ~~~~VI~~Ggg~v~~~~--~~~~l~~--~~~~V~L~a~~e~~~~Rl~~r~ 248 (309)
T PRK08154 203 HEEMVLATGGGIVSEPA--TFDLLLS--HCYTVWLKASPEEHMARVRAQG 248 (309)
T ss_pred CCCEEEECCCchhCCHH--HHHHHHh--CCEEEEEECCHHHHHHHHhcCC
Confidence 33455554 32211111 1111222 3457788876 88999998874
No 122
>PRK06696 uridine kinase; Validated
Probab=98.04 E-value=1.2e-05 Score=82.24 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=31.7
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCC--ceEEEEcchHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLI 303 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~--k~~vvIStD~I 303 (688)
.+.+|.++|.+||||||+|++|++.++. ..+++|+.|.+
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf 61 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDF 61 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccc
Confidence 5889999999999999999999988742 23567776644
No 123
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=98.02 E-value=6.2e-05 Score=78.51 Aligned_cols=38 Identities=18% Similarity=0.331 Sum_probs=31.8
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHh
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m 307 (688)
.+|-++|-.||||||+++.|.+.++ +.+|+.|.+-+++
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G---~~viDaD~iar~l 39 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHH---IEVIDADLVVREL 39 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC---CeEEehHHHHHHH
Confidence 4789999999999999999987655 6789999875543
No 124
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.01 E-value=7.1e-06 Score=74.81 Aligned_cols=103 Identities=23% Similarity=0.171 Sum_probs=53.2
Q ss_pred EEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhc---CCcc--cc-CCC-hHHHHHHHHHHHHHHHHHHHHHh
Q 005604 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKV---PGLL--RK-HNY-SERFQCLMGRANAIFDVLLSRAS 341 (688)
Q Consensus 269 IILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i---~G~~--r~-~~y-~~~~e~l~~~a~~~l~~lie~aL 341 (688)
|+++|.|||||||+|+.|.+.+. ..++ |.+.+..-. .... .. ... ...+..+... +..... ..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~ 70 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLG---DIIR--DIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDS----IIQAIR-RM 70 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC---HHHH--HHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHH----HHHHHH-HH
T ss_pred CEEECCCCCCHHHHHHHHHHHHC---cHHH--HHHHhcCCcccccccchhhhhhhhhhhhHHHHHHH----HHHhhc-cc
Confidence 78999999999999999998852 1111 221111000 0000 00 011 1111222222 111211 35
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHhcCC-CEEE-EEeCCH-HHHHHHHHHhh
Q 005604 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAV-VVFPKP-EDLKIRSVKRF 391 (688)
Q Consensus 342 ~~G~nVILDaTNl~rs~R~~~l~~~a~~~-~~~v-V~~~~p-eel~~R~~kR~ 391 (688)
..+.++|||....... ... .... |++.++ +++.+|+.+|.
T Consensus 71 ~~~~~~iid~~~~~~~----------~~~~~~~~~i~L~~~~e~~~~R~~~R~ 113 (129)
T PF13238_consen 71 NKGRNIIIDGILSNLE----------LERLFDIKFIFLDCSPEELRKRLKKRG 113 (129)
T ss_dssp TTTSCEEEEESSEEEC----------ETTEEEESSEEEE--HHHHHHHHHCTT
T ss_pred ccCCcEEEecccchhc----------ccccceeeEEEEECCHHHHHHHHHhCC
Confidence 6888999998755310 011 1223 778776 89999999984
No 125
>PRK06761 hypothetical protein; Provisional
Probab=97.98 E-value=4e-05 Score=81.52 Aligned_cols=121 Identities=16% Similarity=0.163 Sum_probs=72.3
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEE--E-cchH-HHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHHh
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYIL--L-GTNL-ILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS 341 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vv--I-StD~-Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL 341 (688)
..+|+++|+|||||||+++.+++.+..+.+.+ + ..|. ....+ .+. ......++...+++.......+++.++
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~--~~~--~~~~~eer~~~l~~~~~f~~~l~~~~~ 78 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADY--DGV--ACFTKEEFDRLLSNYPDFKEVLLKNVL 78 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhh--ccc--cCCCHHHHHHHHHhhhHHHHHHHHHHH
Confidence 36899999999999999999999886432211 1 1111 00011 111 011123334444443333345667788
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHHhh
Q 005604 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (688)
Q Consensus 342 ~~G~nVILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~kR~ 391 (688)
..|..||+=..-+...+|..+-..+-...++..++ +.| |.+.+|...|-
T Consensus 79 ~~g~~~i~~~~~l~~~yr~~~~~~~~~~~~v~~~h-~~p~e~i~~R~~~rw 128 (282)
T PRK06761 79 KKGDYYLLPYRKIKNEFGDQFSDELFNDISKNDIY-ELPFDKNTELITDRW 128 (282)
T ss_pred HcCCeEEEEehhhhHHHhhhhhhhhcccceeeeee-cCCHHHHHHHHHHHH
Confidence 89999999988888888876432111222455555 666 78888888774
No 126
>PTZ00301 uridine kinase; Provisional
Probab=97.98 E-value=3.6e-05 Score=78.51 Aligned_cols=39 Identities=18% Similarity=0.312 Sum_probs=29.5
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhC----CCceEEEEcchHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNLI 303 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~----~~k~~vvIStD~I 303 (688)
.|.||-+.|.|||||||+|+.|.+.+ +...+.+|+.|..
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~y 44 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFY 44 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence 37899999999999999999887654 2122457787754
No 127
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=97.97 E-value=4.8e-05 Score=76.73 Aligned_cols=154 Identities=15% Similarity=0.197 Sum_probs=80.0
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhc------------CCcc--ccC-C----------C--hH
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKV------------PGLL--RKH-N----------Y--SE 320 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i------------~G~~--r~~-~----------y--~~ 320 (688)
||.++|.+||||||+++.+.+ .+ +.+|+.|.+-+++-. +|.. ... . | ..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g---~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~ 76 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LG---AFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEE 76 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CC---CEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHH
Confidence 578999999999999998864 44 678888876444321 2210 000 0 0 01
Q ss_pred HHHHHHHHHH----HHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHHhhccCC
Q 005604 321 RFQCLMGRAN----AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFKEMG 395 (688)
Q Consensus 321 ~~e~l~~~a~----~~l~~lie~aL~~G~nVILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~kR~~~~g 395 (688)
.+.++.+... +.+.+.+.. +..+..||+|.--+....-.. . .-.++++.++ ++.++|+.+|. +
T Consensus 77 ~~~~L~~i~hP~v~~~~~~~~~~-~~~~~~vi~e~pLL~E~~~~~-------~-~D~vi~V~a~~e~r~~RL~~R~---g 144 (196)
T PRK14732 77 KLKALNELIHPLVRKDFQKILQT-TAEGKLVIWEVPLLFETDAYT-------L-CDATVTVDSDPEESILRTISRD---G 144 (196)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH-HhcCCcEEEEeeeeeEcCchh-------h-CCEEEEEECCHHHHHHHHHHcC---C
Confidence 1112211111 112222211 234567888886554211110 0 1145577776 78899999992 2
Q ss_pred CCCcHHHHHhhhcccccCCCCCCCCCCCCCcEEEEeccCHHHHHHHHHH
Q 005604 396 KEVPADAVNNMLANYVLPVNKDTPGSDELFDQVMFVELDREEAQRHLDE 444 (688)
Q Consensus 396 ~~Vpeevi~~m~a~fE~P~~~~~p~~~EgfdeI~~~el~~~ea~~li~~ 444 (688)
.-.+++..++.. ++|... ..+..|-|+.++-+.++.++-+++
T Consensus 145 -~s~e~a~~ri~~--Q~~~~~----k~~~aD~vI~N~~~~~~l~~~v~~ 186 (196)
T PRK14732 145 -MKKEDVLARIAS--QLPITE----KLKRADYIVRNDGNREGLKEECKI 186 (196)
T ss_pred -CCHHHHHHHHHH--cCCHHH----HHHhCCEEEECCCCHHHHHHHHHH
Confidence 222455555544 334321 245667777776555554444443
No 128
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.93 E-value=0.00011 Score=78.60 Aligned_cols=97 Identities=16% Similarity=0.173 Sum_probs=59.7
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHH-hcC
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRA-SRT 343 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~a-L~~ 343 (688)
..++|+++|++||||||+++.|. +.+ +..+ |.+- ...+..+.+ +++.. ...
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~-~~g---~~~~--d~~~--------------~~L~~~l~~--------~~~~~~~~~ 56 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALE-DLG---YYCV--DNLP--------------PSLLPKLVE--------LLAQSGGIR 56 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHH-HcC---CeEE--CCcC--------------HHHHHHHHH--------HHHhcCCCC
Confidence 46799999999999999999995 333 5555 2110 111111111 11111 124
Q ss_pred CCeEEEEcCCCCH-HHHHHHHHHHhcCC-CEEEEEeCCH-HHHHHHHHH
Q 005604 344 PRNFIIDQTNVFK-SARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVK 389 (688)
Q Consensus 344 G~nVILDaTNl~r-s~R~~~l~~~a~~~-~~~vV~~~~p-eel~~R~~k 389 (688)
...|++|.++... ......++.+++.+ .+.+||++++ +++.+|+.+
T Consensus 57 ~~av~iD~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~ 105 (288)
T PRK05416 57 KVAVVIDVRSRPFFDDLPEALDELRERGIDVRVLFLDASDEVLIRRYSE 105 (288)
T ss_pred CeEEEEccCchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhh
Confidence 4589999986521 22334566666654 6678899886 899999874
No 129
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=97.92 E-value=0.00021 Score=72.27 Aligned_cols=36 Identities=17% Similarity=0.258 Sum_probs=30.1
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHH
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ 306 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~ 306 (688)
.+|.++|.+||||||+++.|.. .+ +.+|++|.+.++
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g---~~vid~D~i~~~ 37 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EG---FLIVDADQVARD 37 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CC---CeEEeCcHHHHH
Confidence 4799999999999999999986 44 788999976444
No 130
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.91 E-value=2.5e-05 Score=76.87 Aligned_cols=147 Identities=20% Similarity=0.228 Sum_probs=73.4
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNF 347 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL~~G~nV 347 (688)
+|+++|-||.||||++++|. .++ +.+++..++.++.+ ..... .+.+..+.-... .++..++..+ ...++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg---~~~i~l~el~~e~~---~~~~~--de~r~s~~vD~d-~~~~~le~~~-~~~~~ 70 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELG---YKVIELNELAKENG---LYTEY--DELRKSVIVDVD-KLRKRLEELL-REGSG 70 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhC---CceeeHHHHHHhcC---Ceecc--CCccceEEeeHH-HHHHHHHHHh-ccCCe
Confidence 68999999999999999998 666 33443334444433 21111 111100000000 1122333323 56789
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCC-HHHHHHHHHHhhccCCCCCcHHHHHhhh----cccccCCCCCCCCCC
Q 005604 348 IIDQTNVFKSARKRKLRLFVNFRKIAVVVFPK-PEDLKIRSVKRFKEMGKEVPADAVNNML----ANYVLPVNKDTPGSD 422 (688)
Q Consensus 348 ILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~-peel~~R~~kR~~~~g~~Vpeevi~~m~----a~fE~P~~~~~p~~~ 422 (688)
|||. ++. .++.. .=.+|++.+ |+.|.+|+++| |. -++.+.+... .-+..- .-
T Consensus 71 Ivd~-H~~--------hl~~~--~dlVvVLR~~p~~L~~RLk~R----Gy-~~eKI~ENveAEi~~vi~~E-------A~ 127 (180)
T COG1936 71 IVDS-HLS--------HLLPD--CDLVVVLRADPEVLYERLKGR----GY-SEEKILENVEAEILDVILIE-------AV 127 (180)
T ss_pred Eeec-hhh--------hcCCC--CCEEEEEcCCHHHHHHHHHHc----CC-CHHHHHHHHHHHHHHHHHHH-------HH
Confidence 9997 221 11111 113445655 69999999999 42 1233333222 211111 14
Q ss_pred CCCcEEEEeccCHHHHHHHHHHHHhc
Q 005604 423 ELFDQVMFVELDREEAQRHLDEMKGT 448 (688)
Q Consensus 423 EgfdeI~~~el~~~ea~~li~~~~~~ 448 (688)
|.|+.+..++......+++++...+.
T Consensus 128 E~~~~v~evdtt~~s~ee~~~~i~~i 153 (180)
T COG1936 128 ERFEAVIEVDTTNRSPEEVAEEIIDI 153 (180)
T ss_pred HhcCceEEEECCCCCHHHHHHHHHHH
Confidence 66777777765443344444443333
No 131
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.89 E-value=0.00011 Score=75.13 Aligned_cols=39 Identities=18% Similarity=0.232 Sum_probs=34.0
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~I 303 (688)
++.+|-+.|.+||||||+|++|.+.++.....+|+.|..
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~Y 45 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDY 45 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeecccc
Confidence 578999999999999999999999998555778888864
No 132
>PRK13975 thymidylate kinase; Provisional
Probab=97.85 E-value=0.00041 Score=68.79 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=24.5
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCC
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPE 292 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~ 292 (688)
..+|++.|++||||||+|+.|++.+..
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 368999999999999999999998873
No 133
>PLN02924 thymidylate kinase
Probab=97.82 E-value=0.00013 Score=75.07 Aligned_cols=121 Identities=15% Similarity=0.060 Sum_probs=65.3
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCCCceE--EEEc-----ch---HHHHHhhcCCccccCCChHHHHHHHHHHHHHH
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRY--ILLG-----TN---LILEQMKVPGLLRKHNYSERFQCLMGRANAIF 333 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~--vvIS-----tD---~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l 333 (688)
+.+.+|++.|+.||||||.++.|++.+..++. +.+. +. .|++.+. .+. .-......+-....++. .
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~~~~~~g~~ir~~l~-~~~-~~~~~~~~llf~adR~~--~ 89 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVGQMISAYLS-NKS-QLDDRAIHLLFSANRWE--K 89 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCCCCChHHHHHHHHHh-CCC-CCCHHHHHHHHHHHHHH--H
Confidence 34789999999999999999999987764322 2221 11 2333221 110 00011111001111221 1
Q ss_pred HHHHHHHhcCCCeEEEEcCCCCHH-------HHHHHHHHHhcC-C-CEEEEEeCCH-HHHHHHHH
Q 005604 334 DVLLSRASRTPRNFIIDQTNVFKS-------ARKRKLRLFVNF-R-KIAVVVFPKP-EDLKIRSV 388 (688)
Q Consensus 334 ~~lie~aL~~G~nVILDaTNl~rs-------~R~~~l~~~a~~-~-~~~vV~~~~p-eel~~R~~ 388 (688)
...++.+|+.|+.||+|.-..+-- ....|+..+... . +-.+++++.+ +++++|..
T Consensus 90 ~~~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~ 154 (220)
T PLN02924 90 RSLMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGG 154 (220)
T ss_pred HHHHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhc
Confidence 235677889999999997544211 112234433332 1 3466688875 88888854
No 134
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.81 E-value=0.00012 Score=72.28 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=30.3
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHh
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m 307 (688)
+|.++|.+||||||+++.+.+ ++ +.+|+.|.+.+++
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g---~~~i~~D~~~~~~ 36 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LG---IPVIDADKIAHEV 36 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CC---CCEEecCHHHHhh
Confidence 488999999999999999987 54 7788889876554
No 135
>PRK13974 thymidylate kinase; Provisional
Probab=97.78 E-value=0.00045 Score=70.20 Aligned_cols=122 Identities=16% Similarity=0.092 Sum_probs=64.5
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCce-------EEEEc--c-----hHHHHHhhcCCccccCCChHHHHHH---HHH
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKR-------YILLG--T-----NLILEQMKVPGLLRKHNYSERFQCL---MGR 328 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~-------~vvIS--t-----D~Ir~~m~i~G~~r~~~y~~~~e~l---~~~ 328 (688)
.++|++.|++||||||.++.|++.++..+ ++... . ..|++.+ .+..........-..+ ..+
T Consensus 3 g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l--~~~~~~~~~~~~~~~llf~adr 80 (212)
T PRK13974 3 GKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELL--LDTSKDNSPSPLAELLLYAADR 80 (212)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHH--cCCCcccCCCHHHHHHHHHHHH
Confidence 68999999999999999999998775322 11111 0 1233322 1110000011111111 122
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEcCCCCHH--H-------HHHHHHHHh---cC--CCEEEEEeCCH-HHHHHHHHHhh
Q 005604 329 ANAIFDVLLSRASRTPRNFIIDQTNVFKS--A-------RKRKLRLFV---NF--RKIAVVVFPKP-EDLKIRSVKRF 391 (688)
Q Consensus 329 a~~~l~~lie~aL~~G~nVILDaTNl~rs--~-------R~~~l~~~a---~~--~~~~vV~~~~p-eel~~R~~kR~ 391 (688)
+ +.+..+++.++..|..||.|.= +... . -..|+..+. .. ..-.+++++++ +++++|+..|.
T Consensus 81 ~-~~~~~~i~~~l~~g~~Vi~DRy-~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~ 156 (212)
T PRK13974 81 A-QHVSKIIRPALENGDWVISDRF-SGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRK 156 (212)
T ss_pred H-HHHHHHHHHHHHCCCEEEEcCc-hhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence 1 2344556677889999998851 1100 0 011222222 11 23467788886 78899988873
No 136
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.74 E-value=4.1e-05 Score=76.76 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=29.0
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHH
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~I 303 (688)
||.++|.|||||||+|+.|++.+.. +.+|+.|..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~--~~~i~~Ddf 34 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPN--CCVIHQDDF 34 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCC--CeEEccccc
Confidence 5889999999999999999998753 677888864
No 137
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=97.74 E-value=0.00066 Score=69.06 Aligned_cols=40 Identities=18% Similarity=0.130 Sum_probs=32.7
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHh
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m 307 (688)
.+..|.++|.+||||||+++.|.+.++ +.+++.|.+.+++
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg---~~vidaD~i~~~l 44 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLN---LNVVCADTISREI 44 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcC---CeEEeccHHHHHH
Confidence 367899999999999999999987766 5678888765543
No 138
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.74 E-value=0.00052 Score=79.47 Aligned_cols=111 Identities=12% Similarity=0.117 Sum_probs=62.8
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCc-cccCCChH-HHHHHHHHHHHHHHHHHHHHhcC
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGL-LRKHNYSE-RFQCLMGRANAIFDVLLSRASRT 343 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~-~r~~~y~~-~~e~l~~~a~~~l~~lie~aL~~ 343 (688)
...|+|+|.|||||||+++.|++.++ +-.|.+|...++. .|. ..+ -+.. -++...+.-. ++++.++..
T Consensus 6 ~~~i~LiG~~GaGKttvg~~LA~~L~---~~fiD~D~~ie~~--~g~si~e-if~~~Ge~~FR~~E~----~~l~~~~~~ 75 (542)
T PRK14021 6 RPQAVIIGMMGAGKTRVGKEVAQMMR---LPFADADVEIERE--IGMSIPS-YFEEYGEPAFREVEA----DVVADMLED 75 (542)
T ss_pred CccEEEECCCCCCHHHHHHHHHHHhC---CCEEEchHHHHHH--HCcCHHH-HHHHHHHHHHHHHHH----HHHHHHHhc
Confidence 56799999999999999999999987 6678888766543 232 111 0111 1111211111 223333333
Q ss_pred CCeEEEEc---CCCCHHHHHHHHHH-HhcCCCEEEEEeCCH-HHHHHHHHHh
Q 005604 344 PRNFIIDQ---TNVFKSARKRKLRL-FVNFRKIAVVVFPKP-EDLKIRSVKR 390 (688)
Q Consensus 344 G~nVILDa---TNl~rs~R~~~l~~-~a~~~~~~vV~~~~p-eel~~R~~kR 390 (688)
.+.||.. +-...+.|.. ++. +++. . .+||+..+ +++.+|+..+
T Consensus 76 -~~~VIs~GGG~v~~~~n~~~-L~~~~~~~-g-~vv~L~~~~~~l~~Rl~~~ 123 (542)
T PRK14021 76 -FDGIFSLGGGAPMTPSTQHA-LASYIAHG-G-RVVYLDADPKEAMERANRG 123 (542)
T ss_pred -CCeEEECCCchhCCHHHHHH-HHHHHhcC-C-EEEEEECCHHHHHHHHhCC
Confidence 3445543 2344444543 332 2332 2 57788875 8999998654
No 139
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.73 E-value=0.00016 Score=82.58 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=32.2
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHh
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m 307 (688)
-|+++|+|||||||+++.|++.++ +..|++|.++++.
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg---~~~id~D~~i~~~ 38 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLD---LQFIDMDEEIERR 38 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC---CeEEECcHHHHHH
Confidence 388999999999999999998887 6788999877663
No 140
>KOG0234 consensus Fructose-6-phosphate 2-kinase/fructose-2,6-biphosphatase [Carbohydrate transport and metabolism]
Probab=97.71 E-value=0.00026 Score=78.52 Aligned_cols=121 Identities=21% Similarity=0.176 Sum_probs=72.7
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcc-----hHHHHHhh-cCCccccCCC---hHHHHHHHHH-HHHHH
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT-----NLILEQMK-VPGLLRKHNY---SERFQCLMGR-ANAIF 333 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvISt-----D~Ir~~m~-i~G~~r~~~y---~~~~e~l~~~-a~~~l 333 (688)
..+.+|+|+|+|++|||.++.++.+.+. |.-+++ -..++... .... ...+ ..+-..+.++ +..++
T Consensus 26 ~~~~~ivmvglpA~gKt~is~kl~ryl~---w~~~~tk~fn~g~yrr~~~~~~~s--~~ff~p~n~~~~~lr~~~a~~~l 100 (438)
T KOG0234|consen 26 GSKLVIVMVGLPARGKTYISSKLTRYLN---WLGVNTKVFNVGEYRREAVKKVDS--EPFFLPDNAEASKLRKQLALLAL 100 (438)
T ss_pred CCceEEEEecCCccCcchhhhhHHHHHH---hhccccccccHHHHHHHHhccccc--ccccccCChhhhhhhHHHHHHHh
Confidence 3578999999999999999999988765 433322 23333321 1110 0011 1111222222 34456
Q ss_pred HHHHHHHh-cCCCeEEEEcCCCCHHHHHHHHHHHhcCCCEEEEEeC--C-HHHHHHHHHH
Q 005604 334 DVLLSRAS-RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFP--K-PEDLKIRSVK 389 (688)
Q Consensus 334 ~~lie~aL-~~G~nVILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~--~-peel~~R~~k 389 (688)
.+++.... ..|+.+|+|+||.+++.|+.++..+.+...+.+.+++ | +..++.+|.+
T Consensus 101 ~D~~~~l~~~~g~vai~Datnttr~rrk~i~~~~~~~~~~kv~FiEs~c~D~~ii~~NI~ 160 (438)
T KOG0234|consen 101 NDLLHFLIKENGQVAIFDATNTTRERRKRIIDFAEREAGFKVFFIESVCNDPNLINNNIR 160 (438)
T ss_pred hhHHHHhhccCCceEEecCCCCCHHHHHHHHHHHhhcCCceEEEEEeecCCchhHHhhhh
Confidence 66665554 5789999999999999999877776522334444432 2 3566666665
No 141
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.71 E-value=0.00024 Score=70.87 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=30.3
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHH
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL 304 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir 304 (688)
+|.++|++||||||+++.|...+......+++.|.+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccc
Confidence 5789999999999999999887743447788888644
No 142
>PLN02199 shikimate kinase
Probab=97.66 E-value=0.00023 Score=75.96 Aligned_cols=106 Identities=20% Similarity=0.226 Sum_probs=61.1
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCcc-ccC--CChHHHHHHHHHHHHHHHHHHHHHhc
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL-RKH--NYSERFQCLMGRANAIFDVLLSRASR 342 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~-r~~--~y~~~~e~l~~~a~~~l~~lie~aL~ 342 (688)
..-|+|+|.+||||||+++.|++.++ +..|++|.+.++.- .|.. .+. .+++ +.+.+. ...+++.++.
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg---~~fIDtD~lIe~~~-~G~sI~eIf~~~GE--~~FR~~----E~e~L~~L~~ 171 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLG---YTFFDCDTLIEQAM-NGTSVAEIFVHHGE--NFFRGK----ETDALKKLSS 171 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC---CCEEehHHHHHHHh-cCCCHHHHHHHhCH--HHHHHH----HHHHHHHHHh
Confidence 45789999999999999999999886 77888998776631 2320 000 0111 111111 1123333322
Q ss_pred CCCeEEEEcC---CCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHH
Q 005604 343 TPRNFIIDQT---NVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVK 389 (688)
Q Consensus 343 ~G~nVILDaT---Nl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~k 389 (688)
. ..+||... -+..+.| +.+.. + .+||++.+ |++.+|+..
T Consensus 172 ~-~~~VIStGGG~V~~~~n~----~~L~~-G--~vV~Ldas~E~l~~RL~~ 214 (303)
T PLN02199 172 R-YQVVVSTGGGAVIRPINW----KYMHK-G--ISIWLDVPLEALAHRIAA 214 (303)
T ss_pred c-CCEEEECCCcccCCHHHH----HHHhC-C--eEEEEECCHHHHHHHHhh
Confidence 3 35666531 2333333 22221 2 46789886 899999985
No 143
>PLN02842 nucleotide kinase
Probab=97.64 E-value=0.00035 Score=79.60 Aligned_cols=110 Identities=20% Similarity=0.263 Sum_probs=57.8
Q ss_pred EEeccCCCChhHHHHHHHhhCCCceEEEEcchHH-HHHhhcCCccccCCChHHHHHHHHH----HHHHHHHHHHHHhc--
Q 005604 270 MMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR-- 342 (688)
Q Consensus 270 ILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~I-r~~m~i~G~~r~~~y~~~~e~l~~~----a~~~l~~lie~aL~-- 342 (688)
|+.|.|||||||+|+.|++.++ +.+|+++++ +.++. .+. ..+.....++.. -...+..++...++
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg---~~hIs~gdLLR~ev~-~~T----~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~ 72 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFG---LVHISTGDLLRAEVS-AGT----DIGKRAKEFMNSGRLVPDEIVIAMVTGRLSRE 72 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhC---CCEEEccHHHHHHhc-cCC----HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCc
Confidence 5899999999999999999886 567766554 44322 111 011111111110 00011112222221
Q ss_pred --CCCeEEEEcCCCCHHHHHHHHHHHhcCC--CEEEEEeCCH-HHHHHHHHHhh
Q 005604 343 --TPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF 391 (688)
Q Consensus 343 --~G~nVILDaTNl~rs~R~~~l~~~a~~~--~~~vV~~~~p-eel~~R~~kR~ 391 (688)
....+|||.--.+..+ .+.+.+.. .-.+|+++++ +++++|+.+|.
T Consensus 73 ~~~~~G~ILDGfPRt~~Q----a~~Le~~~~~PDlVI~LDvpdevlleRl~gR~ 122 (505)
T PLN02842 73 DAKEKGWLLDGYPRSFAQ----AQSLEKLKIRPDIFILLDVPDEILIDRCVGRR 122 (505)
T ss_pred cccCCcEEEeCCCCcHHH----HHHHHhcCCCCCEEEEEeCCHHHHHHHHhccc
Confidence 2345888973333222 22233322 2256688886 78899988874
No 144
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=97.54 E-value=0.0026 Score=64.95 Aligned_cols=123 Identities=20% Similarity=0.163 Sum_probs=68.3
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCceEE-EEcc--------hHHHHHhhcCCccccCCChHHHHHH-HHHH-HHHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYI-LLGT--------NLILEQMKVPGLLRKHNYSERFQCL-MGRA-NAIF 333 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~v-vISt--------D~Ir~~m~i~G~~r~~~y~~~~e~l-~~~a-~~~l 333 (688)
...+|++-|+=||||||.++.|.+.+..+++- ++.. ..||+.+ +.+. ......-+.+ ...+ .+.+
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~ige~iR~~l-l~~~---~~~~~~~e~lLfaadR~~h~ 77 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPIGEKIRELL-LNGE---EKLSPKAEALLFAADRAQHL 77 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHH-cCCc---cCCCHHHHHHHHHHHHHHHH
Confidence 36799999999999999999998877654321 2211 1233322 2221 0111111111 1111 1235
Q ss_pred HHHHHHHhcCCCeEEEEcC------------CCCHHHHHHHHHHHhcC--CCEEEEEeCCH-HHHHHHHHHhhc
Q 005604 334 DVLLSRASRTPRNFIIDQT------------NVFKSARKRKLRLFVNF--RKIAVVVFPKP-EDLKIRSVKRFK 392 (688)
Q Consensus 334 ~~lie~aL~~G~nVILDaT------------Nl~rs~R~~~l~~~a~~--~~~~vV~~~~p-eel~~R~~kR~~ 392 (688)
...+.-+++.|+.||+|.- ++..+.... +..++.. .+-..++++.+ ++.++|..+|..
T Consensus 78 ~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~-l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~ 150 (208)
T COG0125 78 EEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLA-LNEFAPGGLKPDLTLYLDVPPEVALERIRKRGE 150 (208)
T ss_pred HHHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHH-HHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 5677788999999999952 222222221 1122221 12345578875 899999999843
No 145
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=97.53 E-value=0.00034 Score=67.76 Aligned_cols=101 Identities=18% Similarity=0.144 Sum_probs=56.7
Q ss_pred CCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccccCCChH-HHHHHHHHHHHHHHHHHHHHhcCCCeEEEEc--
Q 005604 275 PASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRASRTPRNFIIDQ-- 351 (688)
Q Consensus 275 PGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r~~~y~~-~~e~l~~~a~~~l~~lie~aL~~G~nVILDa-- 351 (688)
|||||||+++.|++.++ +-.+..|....+. .|..-...+.. -++.+.+ .-..+++.++... +.||..
T Consensus 1 ~GsGKStvg~~lA~~L~---~~fiD~D~~i~~~--~g~si~~i~~~~G~~~fr~----~E~~~l~~l~~~~-~~VIa~GG 70 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLG---RPFIDLDDEIEER--TGMSISEIFAEEGEEAFRE----LESEALRELLKEN-NCVIACGG 70 (158)
T ss_dssp TTSSHHHHHHHHHHHHT---SEEEEHHHHHHHH--HTSHHHHHHHHHHHHHHHH----HHHHHHHHHHCSS-SEEEEE-T
T ss_pred CCCcHHHHHHHHHHHhC---CCccccCHHHHHH--hCCcHHHHHHcCChHHHHH----HHHHHHHHHhccC-cEEEeCCC
Confidence 79999999999999988 6788888766543 23100000111 1111111 1123444444454 666665
Q ss_pred -CCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHHhh
Q 005604 352 -TNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (688)
Q Consensus 352 -TNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~kR~ 391 (688)
+-...+.|.. ++ . ...+||++.+ +++.+|+..+.
T Consensus 71 G~~~~~~~~~~-L~---~--~g~vI~L~~~~~~l~~Rl~~~~ 106 (158)
T PF01202_consen 71 GIVLKEENREL-LK---E--NGLVIYLDADPEELAERLRARD 106 (158)
T ss_dssp TGGGSHHHHHH-HH---H--HSEEEEEE--HHHHHHHHHHHC
T ss_pred CCcCcHHHHHH-HH---h--CCEEEEEeCCHHHHHHHHhCCC
Confidence 4444444432 33 2 2357788776 89999998774
No 146
>PRK07667 uridine kinase; Provisional
Probab=97.49 E-value=0.00073 Score=67.69 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=31.3
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCC--ceEEEEcchHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLI 303 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~--k~~vvIStD~I 303 (688)
...+|.|+|.|||||||+|+.|++.+.. ....+|+.|..
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 3479999999999999999999887642 23678888863
No 147
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=97.48 E-value=0.00085 Score=68.22 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=24.9
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCC
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPE 292 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~ 292 (688)
..+|++.|.-|+||||+|+.|++.++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~ 30 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGF 30 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCC
Confidence 568999999999999999999999884
No 148
>PLN02348 phosphoribulokinase
Probab=97.48 E-value=0.00051 Score=75.99 Aligned_cols=28 Identities=14% Similarity=0.188 Sum_probs=25.2
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
..+.||-+.|.+||||||+|++|.+.++
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999999998775
No 149
>PLN02165 adenylate isopentenyltransferase
Probab=97.47 E-value=0.00067 Score=73.72 Aligned_cols=36 Identities=17% Similarity=0.369 Sum_probs=31.3
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~I 303 (688)
...+|+++|++||||||+|..|++.++ +.+|+.|.+
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l~---~eIIsaDs~ 77 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRFP---SEIINSDKM 77 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHcC---CceecCChh
Confidence 356999999999999999999999876 567888865
No 150
>PRK13976 thymidylate kinase; Provisional
Probab=97.47 E-value=0.0026 Score=64.92 Aligned_cols=137 Identities=16% Similarity=0.045 Sum_probs=70.9
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCCCc-e--EEEEcc--------hHHHHHhhcCCccccCCChHHHHHHHH--HHHHHH
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHPEK-R--YILLGT--------NLILEQMKVPGLLRKHNYSERFQCLMG--RANAIF 333 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~~k-~--~vvISt--------D~Ir~~m~i~G~~r~~~y~~~~e~l~~--~a~~~l 333 (688)
++|++-|+-||||||.++.|.+.+..+ + -+++.. +.||+.+ .+. . .....-+.+.- ...+.+
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~~~~~g~~ir~~l--~~~--~-~~~~~~~~llf~a~R~~~~ 75 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPGGTSFNELVRGLL--LSL--K-NLDKISELLLFIAMRREHF 75 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCCCCHHHHHHHHHH--cCC--c-CCCHHHHHHHHHHHHHHHH
Confidence 479999999999999999998776532 1 122211 1233322 111 0 11111111111 111234
Q ss_pred HHHHHHHhcCCCeEEEEcCCCCHHH--------HHHHHHHHhc---C-CCEEEEEeCCH-HHHHHHHHHhhccCCCCCcH
Q 005604 334 DVLLSRASRTPRNFIIDQTNVFKSA--------RKRKLRLFVN---F-RKIAVVVFPKP-EDLKIRSVKRFKEMGKEVPA 400 (688)
Q Consensus 334 ~~lie~aL~~G~nVILDaTNl~rs~--------R~~~l~~~a~---~-~~~~vV~~~~p-eel~~R~~kR~~~~g~~Vpe 400 (688)
...+.-+|++|+.||.|.-..+--. -..|+..+.. . .+=.+++++++ +++++|..+|. -+..+.
T Consensus 76 ~~~I~p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~~---~e~~~~ 152 (209)
T PRK13976 76 VKVILPALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKNG---YEFMDL 152 (209)
T ss_pred HHHHHHHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhcccc---hhcccH
Confidence 4567778899999999952221100 1112333322 1 13355577775 88899886542 122345
Q ss_pred HHHHhhhcccc
Q 005604 401 DAVNNMLANYV 411 (688)
Q Consensus 401 evi~~m~a~fE 411 (688)
+.+.+..+.|.
T Consensus 153 ~~l~~v~~~Y~ 163 (209)
T PRK13976 153 EFYDKVRKGFR 163 (209)
T ss_pred HHHHHHHHHHH
Confidence 55555555543
No 151
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.45 E-value=0.00029 Score=67.95 Aligned_cols=103 Identities=25% Similarity=0.330 Sum_probs=56.9
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNF 347 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL~~G~nV 347 (688)
=|+++|-||+||||++.++++..+ -.++-|| |.+++.- +.. .|.++|+..+-.-. .+.+.++.++.. -..
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~-~~~i~is-d~vkEn~-l~~-----gyDE~y~c~i~DEd-kv~D~Le~~m~~-Gg~ 78 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTG-LEYIEIS-DLVKENN-LYE-----GYDEEYKCHILDED-KVLDELEPLMIE-GGN 78 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhC-CceEehh-hHHhhhc-chh-----cccccccCccccHH-HHHHHHHHHHhc-CCc
Confidence 378999999999999999998766 2355554 5554431 111 12233321110001 122233444444 567
Q ss_pred EEEc--CCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHHhh
Q 005604 348 IIDQ--TNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (688)
Q Consensus 348 ILDa--TNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~kR~ 391 (688)
|||- +.+.++ | |+ -.||++.+| +.|-.|++.|.
T Consensus 79 IVDyHgCd~Fpe-r--wf--------dlVvVLr~~~s~LY~RL~sRg 114 (176)
T KOG3347|consen 79 IVDYHGCDFFPE-R--WF--------DLVVVLRTPNSVLYDRLKSRG 114 (176)
T ss_pred EEeecccCccch-h--he--------eEEEEEecCchHHHHHHHHcC
Confidence 7774 333211 1 11 144567888 89999999994
No 152
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=97.45 E-value=0.0019 Score=66.21 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=29.1
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHH
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL 304 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir 304 (688)
.+|.+.|++||||||+++.|++.++ +..++++.+.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~---~~~~~~g~~~ 37 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLG---YAYLDSGAMY 37 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC---CceeeCchHH
Confidence 5789999999999999999999887 5566666553
No 153
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=97.44 E-value=0.00031 Score=70.04 Aligned_cols=36 Identities=17% Similarity=0.285 Sum_probs=29.8
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHh
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m 307 (688)
+|-++|..||||||+++.|.+ ++ +.+|+.|.+-.++
T Consensus 2 iIglTG~igsGKStv~~~l~~-~G---~~vidaD~i~~~l 37 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAE-LG---FPVIDADEIAHEL 37 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-TT----EEEEHHHHHHHC
T ss_pred EEEEECCCcCCHHHHHHHHHH-CC---CCEECccHHHHHH
Confidence 688999999999999999977 55 8899999875543
No 154
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=97.43 E-value=0.0018 Score=65.74 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=30.6
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHH
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE 305 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~ 305 (688)
+.+|-++|-+||||||+|+.+.+ .+ +.+|+.|.+.+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G---~~vidaD~v~r 37 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LG---FPVIDADDVAR 37 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cC---CeEEEccHHHH
Confidence 57899999999999999999987 55 67888887655
No 155
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=97.42 E-value=0.0026 Score=62.76 Aligned_cols=117 Identities=20% Similarity=0.141 Sum_probs=60.4
Q ss_pred EeccCCCChhHHHHHHHhhCCCceEE-EEcc--------hHHHHHhhcCCccccCCChHH-HHHHHHHHH-HHHHHHHHH
Q 005604 271 MVGLPASGKTTWAEKWVKDHPEKRYI-LLGT--------NLILEQMKVPGLLRKHNYSER-FQCLMGRAN-AIFDVLLSR 339 (688)
Q Consensus 271 LvGLPGSGKST~Ar~L~~~~~~k~~v-vISt--------D~Ir~~m~i~G~~r~~~y~~~-~e~l~~~a~-~~l~~lie~ 339 (688)
+=|+.||||||+++.|.+.+...+.. ++.. +.+++.+. + ....... ...+..... ..+...+..
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~ir~~l~--~---~~~~~~~~~~~l~~a~r~~~~~~~I~~ 75 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYKVIITFPPGSTPIGELIRELLR--S---ESELSPEAEALLFAADRAWHLARVIRP 75 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEEEEEEESSTSSHHHHHHHHHHH--T---SSTCGHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCcccccCCCCCChHHHHHHHHHh--c---ccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35999999999999999877644332 2211 12233221 1 1111111 111111111 234456667
Q ss_pred HhcCCCeEEEEcC------------CCCHHHHHHHHHHHhcCCCEEEEEeCC-HHHHHHHHHHhhc
Q 005604 340 ASRTPRNFIIDQT------------NVFKSARKRKLRLFVNFRKIAVVVFPK-PEDLKIRSVKRFK 392 (688)
Q Consensus 340 aL~~G~nVILDaT------------Nl~rs~R~~~l~~~a~~~~~~vV~~~~-peel~~R~~kR~~ 392 (688)
++++|..||+|.- .+..+.-.++...+....+=.++++++ ++++.+|+.+|..
T Consensus 76 ~l~~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~ 141 (186)
T PF02223_consen 76 ALKRGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGE 141 (186)
T ss_dssp HHHTTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSS
T ss_pred HHcCCCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCc
Confidence 8899999999931 111222222222222112223446665 5999999999964
No 156
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.39 E-value=0.00058 Score=64.83 Aligned_cols=24 Identities=17% Similarity=0.444 Sum_probs=21.7
Q ss_pred EEEEeccCCCChhHHHHHHHhhCC
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
+|+++|++||||||+++.|++.++
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 478999999999999999998765
No 157
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.37 E-value=0.00037 Score=71.47 Aligned_cols=36 Identities=22% Similarity=0.145 Sum_probs=27.9
Q ss_pred EEEEeccCCCChhHHHHHHHhhCC----CceEEEEcchHH
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNLI 303 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~----~k~~vvIStD~I 303 (688)
+|-++|.+||||||+|+.|+..+. .....+|+.|..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 467899999999999999988763 234667777743
No 158
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=97.37 E-value=0.0066 Score=59.56 Aligned_cols=158 Identities=15% Similarity=0.142 Sum_probs=84.9
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCce-EE----EEcchHHHHHhhcCCccccC-CChHHHHHHHHH--------HH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKR-YI----LLGTNLILEQMKVPGLLRKH-NYSERFQCLMGR--------AN 330 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k~-~v----vIStD~Ir~~m~i~G~~r~~-~y~~~~e~l~~~--------a~ 330 (688)
..++|+++|++|+||.|+.......+.... .. +|+.. . -.|..... ....++.....+ |.
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRp----a--~ag~EdH~avs~~eF~~~a~~g~FAlsWqAh 77 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRP----A--DAGGEDHDALSEAEFNTRAGQGAFALSWQAH 77 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEeccc----C--CCCcccccccCHHHHHHHhhcCceeEEehhc
Confidence 378999999999999999877766555321 11 22211 0 01110000 001111111000 00
Q ss_pred H---HHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHHh-cCCCEEEEEeCC-HHHHHHHHHHhhccCCCCCcHHHHHh
Q 005604 331 A---IFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFV-NFRKIAVVVFPK-PEDLKIRSVKRFKEMGKEVPADAVNN 405 (688)
Q Consensus 331 ~---~l~~lie~aL~~G~nVILDaTNl~rs~R~~~l~~~a-~~~~~~vV~~~~-peel~~R~~kR~~~~g~~Vpeevi~~ 405 (688)
. -+-.-|...|..|..||+... |. .+-.+. .|....+|++.. |+.|.+|+.+| |++-.+++..+
T Consensus 78 GL~Ygip~eId~wl~~G~vvl~NgS------Ra-~Lp~arrry~~Llvv~ita~p~VLaqRL~~R----GREs~eeI~aR 146 (192)
T COG3709 78 GLSYGIPAEIDLWLAAGDVVLVNGS------RA-VLPQARRRYPQLLVVCITASPEVLAQRLAER----GRESREEILAR 146 (192)
T ss_pred CccccCchhHHHHHhCCCEEEEecc------Hh-hhHHHHHhhhcceeEEEecCHHHHHHHHHHh----ccCCHHHHHHH
Confidence 0 011234556789999999863 22 122222 244566777766 59999999999 77778888888
Q ss_pred hhcccccCCCCCCCCCCCCCcEEEEeccC--HHHHHHHHHHHHh
Q 005604 406 MLANYVLPVNKDTPGSDELFDQVMFVELD--REEAQRHLDEMKG 447 (688)
Q Consensus 406 m~a~fE~P~~~~~p~~~EgfdeI~~~el~--~~ea~~li~~~~~ 447 (688)
+...-..- ..+.|.+.+.+.. +...++++....+
T Consensus 147 L~R~a~~~--------~~~~dv~~idNsG~l~~ag~~ll~~l~~ 182 (192)
T COG3709 147 LARAARYT--------AGPGDVTTIDNSGELEDAGERLLALLHQ 182 (192)
T ss_pred HHhhcccc--------cCCCCeEEEcCCCcHHHHHHHHHHHHHh
Confidence 77543321 2356666665322 2333455554443
No 159
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.36 E-value=0.00034 Score=69.38 Aligned_cols=38 Identities=24% Similarity=0.259 Sum_probs=30.6
Q ss_pred EEEEeccCCCChhHHHHHHHhhCC--CceEEEEcchHHHH
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILE 305 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~--~k~~vvIStD~Ir~ 305 (688)
+|.++|.|||||||+|+.|++.+. .....+|+.|....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~ 40 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV 40 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence 588999999999999999998753 12367888887653
No 160
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=97.29 E-value=0.0029 Score=70.56 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=30.5
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHH
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ 306 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~ 306 (688)
..|.|+|..||||||+++.|.+ ++ +.+|++|.+.++
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G---~~vidaD~i~~~ 37 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LG---AVVVDADVLARE 37 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CC---CeEEehHHHHHH
Confidence 4689999999999999999976 54 778999987655
No 161
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.28 E-value=0.00019 Score=71.77 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=27.5
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCce------EEEEcchH
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKR------YILLGTNL 302 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~------~vvIStD~ 302 (688)
||-++|++||||||+|++|...+.... ..+++.|.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~ 41 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDD 41 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGG
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecc
Confidence 688999999999999999998776322 34666663
No 162
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.27 E-value=0.00088 Score=61.19 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=27.6
Q ss_pred EEEeccCCCChhHHHHHHHhhCCCceEEEEcchHH
Q 005604 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (688)
Q Consensus 269 IILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~I 303 (688)
|++.|+||+||||+|+.+++.+. ..++.++...+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~-~~~~~i~~~~~ 34 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG-FPFIEIDGSEL 34 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT-SEEEEEETTHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcc-ccccccccccc
Confidence 68999999999999999999986 34566665544
No 163
>PRK07933 thymidylate kinase; Validated
Probab=97.22 E-value=0.0028 Score=64.67 Aligned_cols=121 Identities=17% Similarity=0.119 Sum_probs=64.9
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCCCce--EEEEc---------chHHHHHhhcCCccccCCC-hHHHHHHH--HHHHHH
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHPEKR--YILLG---------TNLILEQMKVPGLLRKHNY-SERFQCLM--GRANAI 332 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~~k~--~vvIS---------tD~Ir~~m~i~G~~r~~~y-~~~~e~l~--~~a~~~ 332 (688)
++|++.|+-||||||+++.|++.+..++ ++.+. .+.+|+.+ .+....... ......+. .++. .
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~~~~~~~g~~ir~~l--~~~~~~~~~~~~~~~llf~a~R~~-~ 77 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGRSVHADLAAEAL--HGRHGDLADSVYAMATLFALDRAG-A 77 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCccHHHHHHH--cCCCCcccCCHHHHHHHHhhhhhh-h
Confidence 3799999999999999999998775432 22221 12344332 121000000 11111111 1221 2
Q ss_pred HHHHHHHHhcCCCeEEEEcCCCCH----H---------HHHHHHHHHhc--C---CCEEEEEeCCH-HHHHHHHHHhh
Q 005604 333 FDVLLSRASRTPRNFIIDQTNVFK----S---------ARKRKLRLFVN--F---RKIAVVVFPKP-EDLKIRSVKRF 391 (688)
Q Consensus 333 l~~lie~aL~~G~nVILDaTNl~r----s---------~R~~~l~~~a~--~---~~~~vV~~~~p-eel~~R~~kR~ 391 (688)
+. .|.-++++|..||.|.--.+- . .-..|+..+.. . .+=.+|+++.+ +++++|+.+|.
T Consensus 78 ~~-~I~p~l~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~ 154 (213)
T PRK07933 78 RD-ELAGLLAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRRA 154 (213)
T ss_pred HH-HHHHHHhCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhhc
Confidence 22 355678899999999522221 1 11223444432 1 12356688875 89999999884
No 164
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=97.19 E-value=0.0042 Score=60.61 Aligned_cols=127 Identities=15% Similarity=0.155 Sum_probs=78.7
Q ss_pred CCCcceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhh----cCCc--ccc---CCChHHH-----HHHHH
Q 005604 262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK----VPGL--LRK---HNYSERF-----QCLMG 327 (688)
Q Consensus 262 ~~~~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~----i~G~--~r~---~~y~~~~-----e~l~~ 327 (688)
.+.+.++|+|-|.|-||||++|..+..-. ...|..|..|...+.+- ..+. ..+ ......| ..+.+
T Consensus 19 g~~~griVlLNG~~saGKSSiA~A~Q~~~-a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e 97 (205)
T COG3896 19 GMPEGRIVLLNGGSSAGKSSIALAFQDLA-AEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILE 97 (205)
T ss_pred CCCCceEEEecCCCccchhHHHHHHHHHh-hcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHHH
Confidence 34568999999999999999999996543 34588899898766532 1111 000 0011111 22333
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHHh
Q 005604 328 RANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKR 390 (688)
Q Consensus 328 ~a~~~l~~lie~aL~~G~nVILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~kR 390 (688)
.+.......|...+..|-+||.|+.-..+..--.-++.|... ++.+|=+.+| |++.+|-..|
T Consensus 98 ~~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~l~g~-~v~~VGV~~p~E~~~~Re~rr 160 (205)
T COG3896 98 LAMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRVLEGC-RVWMVGVHVPDEEGARRELRR 160 (205)
T ss_pred HHHHHHHHHHHHHhccCcceeehhcccchhhHHHHHHHHhCC-ceEEEEeeccHHHHHHHHhhc
Confidence 333333445555678999999999877755444434444433 6777767777 7777665555
No 165
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.19 E-value=0.0015 Score=75.49 Aligned_cols=37 Identities=19% Similarity=0.280 Sum_probs=30.7
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~I 303 (688)
...+|.++|++||||||+|+.|+..++. ..+|+.|..
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglLp~--vgvIsmDdy 100 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFMPS--IAVISMDNY 100 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhCCC--cEEEEEcce
Confidence 4789999999999999999999988763 456776754
No 166
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.18 E-value=0.00097 Score=71.92 Aligned_cols=35 Identities=29% Similarity=0.321 Sum_probs=30.8
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~ 302 (688)
.+.+|+++|++||||||+|..|++.++ ..+||.|.
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~---~~iis~Ds 37 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLN---GEIISADS 37 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCC---CcEEeccc
Confidence 357999999999999999999999886 56788886
No 167
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=97.15 E-value=0.0072 Score=64.31 Aligned_cols=140 Identities=18% Similarity=0.188 Sum_probs=76.9
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHH--hcC
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRA--SRT 343 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~a--L~~ 343 (688)
.++||++|++||||||-.+.| ++++ |..| |.+ + ..-...+++ ++... -..
T Consensus 1 m~~vIiTGlSGaGKs~Al~~l-ED~G---y~cv--DNl------P--------~~Ll~~l~~--------~~~~~~~~~~ 52 (284)
T PF03668_consen 1 MELVIITGLSGAGKSTALRAL-EDLG---YYCV--DNL------P--------PSLLPQLIE--------LLAQSNSKIE 52 (284)
T ss_pred CeEEEEeCCCcCCHHHHHHHH-HhcC---eeEE--cCC------c--------HHHHHHHHH--------HHHhcCCCCc
Confidence 479999999999999988876 5666 7777 421 0 000111111 11111 123
Q ss_pred CCeEEEEcCCCCH-HHHHHHHHHHhcCC-CEEEEEeCCH-HHHHHHHH-HhhccCCCCC-----cHHHHHhhhcccccCC
Q 005604 344 PRNFIIDQTNVFK-SARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSV-KRFKEMGKEV-----PADAVNNMLANYVLPV 414 (688)
Q Consensus 344 G~nVILDaTNl~r-s~R~~~l~~~a~~~-~~~vV~~~~p-eel~~R~~-kR~~~~g~~V-----peevi~~m~a~fE~P~ 414 (688)
+--|+||.-+... ..-.+.+..+.+.+ .+.++|+++. +++++|-+ .|. .|.. ..+.|++-.+.+++-
T Consensus 53 ~~Ai~iD~R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR---~HPL~~~~~~le~I~~Er~~L~~l- 128 (284)
T PF03668_consen 53 KVAIVIDIRSREFFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSETRR---RHPLSSDGSLLEAIEKERELLEPL- 128 (284)
T ss_pred eEEEEEeCCChHHHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHhccC---CCCCCCCCCcHHHHHHHHHHHHHH-
Confidence 4578999754322 12222333344444 7899999986 78888876 342 2222 234466555555422
Q ss_pred CCCCCCCCCCCcEEEEe-ccCHHHHHHHHHH
Q 005604 415 NKDTPGSDELFDQVMFV-ELDREEAQRHLDE 444 (688)
Q Consensus 415 ~~~~p~~~EgfdeI~~~-el~~~ea~~li~~ 444 (688)
.+..|.|+=+ .++..+.++.|..
T Consensus 129 -------r~~Ad~vIDTs~l~~~~Lr~~i~~ 152 (284)
T PF03668_consen 129 -------RERADLVIDTSNLSVHQLRERIRE 152 (284)
T ss_pred -------HHhCCEEEECCCCCHHHHHHHHHH
Confidence 2334544433 5666666666654
No 168
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.09 E-value=0.0045 Score=68.91 Aligned_cols=42 Identities=38% Similarity=0.418 Sum_probs=32.8
Q ss_pred CCcceEEEEeccCCCChhHHHHHHHhhCC--CceEEEEcchHHH
Q 005604 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLIL 304 (688)
Q Consensus 263 ~~~~~LIILvGLPGSGKST~Ar~L~~~~~--~k~~vvIStD~Ir 304 (688)
.+.|.+|+|+||-||||||.+.+|+..+. .+...+++.|..|
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~R 140 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYR 140 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCC
Confidence 45689999999999999999988876543 2446778888643
No 169
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=97.08 E-value=0.0039 Score=64.58 Aligned_cols=158 Identities=18% Similarity=0.225 Sum_probs=87.4
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcc-hHHHHHhhcCCccccCCChHHHHHHHHHHH----HHHHHHHHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT-NLILEQMKVPGLLRKHNYSERFQCLMGRAN----AIFDVLLSR 339 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvISt-D~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~----~~l~~lie~ 339 (688)
...-++++|.|||||+|+|.++.+.+. +.+|++ |.+|+++. .+. ..+...+.++++-. ...-.+++.
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~---~~hl~tGdllr~~ia-~~t----elg~~~~~~~~~g~lvpDeiv~~~l~~ 85 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFG---VIHISTGDLLRDEIA-SGT----ELGKEAKEAIDKGKLVPDEVVVRLLEK 85 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcC---CccchhHHHHHHHHh-ccC----cHHHHHHHHHHhcCcCcHHHHHHHHHh
Confidence 356788999999999999999999887 566776 55555432 332 11222222222110 111124444
Q ss_pred HhcCC---CeEEEEcCCCCHHHHHHHHHHHhcC--CCEEEEEeCCH-HHHHHHHHHhhccCCCCCcHHHHHhhhcccccC
Q 005604 340 ASRTP---RNFIIDQTNVFKSARKRKLRLFVNF--RKIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLP 413 (688)
Q Consensus 340 aL~~G---~nVILDaTNl~rs~R~~~l~~~a~~--~~~~vV~~~~p-eel~~R~~kR~~~~g~~Vpeevi~~m~a~fE~P 413 (688)
.+... +.+|+|..--+..+-.. +.+. ..-.+|.+.+| +.+.+|+..|- -|..+-.+.. ..|.+|
T Consensus 86 ~l~~~~~~~~~ildg~Prt~~qa~~----l~~~~~~~d~Vi~l~vp~~~L~~ri~~r~---ihp~sG~~Yh---~~~~pP 155 (235)
T KOG3078|consen 86 RLENPRCQKGFILDGFPRTVQQAEE----LLDRIAQIDLVINLKVPEEVLVDRITGRR---IHPASGRVYH---LEFNPP 155 (235)
T ss_pred hccccccccccccCCCCcchHHHHH----HHHccCCcceEEEecCCHHHHHHHHhccc---ccCcccceec---ccccCC
Confidence 45544 78999985433332222 2222 23467788888 68899999884 2232222222 344455
Q ss_pred CCCCCCCCCCCCcEEEEe------ccCHHHHHHHHHHHHh
Q 005604 414 VNKDTPGSDELFDQVMFV------ELDREEAQRHLDEMKG 447 (688)
Q Consensus 414 ~~~~~p~~~EgfdeI~~~------el~~~ea~~li~~~~~ 447 (688)
.. .+-|.|.-. +...+.+++.++.|++
T Consensus 156 k~-------~~~dDitgepL~qr~dD~~e~v~~rL~~y~~ 188 (235)
T KOG3078|consen 156 KV-------PGKDDITGEPLIQREDDKPEVVKKRLKAYKE 188 (235)
T ss_pred cc-------ccccccccChhhcCccccHHHHHHHHHHHhh
Confidence 43 234444311 2345667777777765
No 170
>PRK09087 hypothetical protein; Validated
Probab=97.08 E-value=0.00088 Score=69.04 Aligned_cols=135 Identities=19% Similarity=0.202 Sum_probs=69.9
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhh--c-CCc--cccCCChHHHHHHHHHHHHHHHHHHHHH
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK--V-PGL--LRKHNYSERFQCLMGRANAIFDVLLSRA 340 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~--i-~G~--~r~~~y~~~~e~l~~~a~~~l~~lie~a 340 (688)
...++++|.+||||||+++.+++... +..|+.+.+....- + .+. +.+-.... .. ...+-.++..+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~l~iDDi~~~~-~~------~~~lf~l~n~~ 113 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD---ALLIHPNEIGSDAANAAAEGPVLIEDIDAGG-FD------ETGLFHLINSV 113 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC---CEEecHHHcchHHHHhhhcCeEEEECCCCCC-CC------HHHHHHHHHHH
Confidence 34689999999999999999987754 44565532221110 0 010 00000000 00 11133455566
Q ss_pred hcCCCeEEEEcCCCCHHHHHHHHHHHhc-CCCEEEEEeCCH--HHHHHHHHHhhccCCCCCcHHHHHhhhcccc
Q 005604 341 SRTPRNFIIDQTNVFKSARKRKLRLFVN-FRKIAVVVFPKP--EDLKIRSVKRFKEMGKEVPADAVNNMLANYV 411 (688)
Q Consensus 341 L~~G~nVILDaTNl~rs~R~~~l~~~a~-~~~~~vV~~~~p--eel~~R~~kR~~~~g~~Vpeevi~~m~a~fE 411 (688)
.++|+.+|+-++..-..... .+..++. ...-.++.++.+ +++++-++++....+-.+++++++-+.+++.
T Consensus 114 ~~~g~~ilits~~~p~~~~~-~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~ 186 (226)
T PRK09087 114 RQAGTSLLMTSRLWPSSWNV-KLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRME 186 (226)
T ss_pred HhCCCeEEEECCCChHHhcc-ccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Confidence 67788888877643222211 1111221 111134455443 3444434433333466799999998888776
No 171
>PRK00023 cmk cytidylate kinase; Provisional
Probab=97.07 E-value=0.0063 Score=62.70 Aligned_cols=35 Identities=29% Similarity=0.295 Sum_probs=29.8
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHH
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~I 303 (688)
..+|.+.|.+||||||+|+.+++.++ +..++++.+
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~---~~~~~~~~~ 38 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLG---FHYLDTGAM 38 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC---CCcccCchh
Confidence 46899999999999999999999887 556777664
No 172
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.01 E-value=0.006 Score=62.67 Aligned_cols=28 Identities=25% Similarity=0.274 Sum_probs=25.0
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
..+.+|.++|++||||||+++.|+..+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3589999999999999999999987765
No 173
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.99 E-value=0.0018 Score=63.93 Aligned_cols=33 Identities=21% Similarity=0.390 Sum_probs=26.5
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCCCceEEEEcc
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvISt 300 (688)
.+|+++|.|||||||+|..++..++. .++.|.+
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~-~~~~iat 34 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGL-QVLYIAT 34 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCC-CcEeCcC
Confidence 36899999999999999999988652 3555655
No 174
>PRK05439 pantothenate kinase; Provisional
Probab=96.99 E-value=0.0025 Score=68.83 Aligned_cols=41 Identities=22% Similarity=0.073 Sum_probs=32.4
Q ss_pred CCcceEEEEeccCCCChhHHHHHHHhhCC----CceEEEEcchHH
Q 005604 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNLI 303 (688)
Q Consensus 263 ~~~~~LIILvGLPGSGKST~Ar~L~~~~~----~k~~vvIStD~I 303 (688)
.+.+.+|.++|.|||||||+|+.|...+. .....+|+.|..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdF 127 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGF 127 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccc
Confidence 35688999999999999999999987543 234678888854
No 175
>PRK07429 phosphoribulokinase; Provisional
Probab=96.98 E-value=0.0078 Score=65.58 Aligned_cols=40 Identities=18% Similarity=0.119 Sum_probs=32.1
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHH
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~I 303 (688)
..+.+|-++|.+||||||+++.|.+.++.....+|+.|.+
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~ 45 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDY 45 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEeccc
Confidence 3578999999999999999999998876444556666754
No 176
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=96.97 E-value=0.0058 Score=70.18 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=33.1
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ 306 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~ 306 (688)
.+.+|.+.|++||||||+|+.|++.++ +.+|++|.+.+.
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~---~~~~d~g~~YR~ 321 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLG---LLYLDTGAMYRA 321 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC---CeEecCCceehH
Confidence 467999999999999999999999987 788887765444
No 177
>PHA03132 thymidine kinase; Provisional
Probab=96.96 E-value=0.0082 Score=69.68 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=23.5
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhC
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~ 290 (688)
..+|++-|.-||||||+++.|.+.+
T Consensus 257 ~~fIv~EGidGsGKTTlik~L~e~l 281 (580)
T PHA03132 257 ACFLFLEGVMGVGKTTLLNHMRGIL 281 (580)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999999887
No 178
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.91 E-value=0.0066 Score=64.44 Aligned_cols=36 Identities=11% Similarity=0.150 Sum_probs=28.8
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHH
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~I 303 (688)
+|.++|.+||||||+++.|...++.....+|+.|.+
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~ 36 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDY 36 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECccc
Confidence 477899999999999999998776444667777744
No 179
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.91 E-value=0.0062 Score=62.06 Aligned_cols=142 Identities=11% Similarity=0.047 Sum_probs=67.3
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhC--CCceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRT 343 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~--~~k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL~~ 343 (688)
...++++|.+|+|||++|+.++... ....++.|+...+......... ..--+-++.+.+-......+..+++.....
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~liiDdi~~l~~~~~~~L~~~~~~~~~~ 120 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAFDFDPE-AELYAVDDVERLDDAQQIALFNLFNRVRAH 120 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHHhhccc-CCEEEEeChhhcCchHHHHHHHHHHHHHHc
Confidence 4678999999999999999998764 2223566665543332110000 000011111111111222344455444445
Q ss_pred CCe-EEEEcCCCCHHHHHHHHHHHh-cCCCEEEEEeCCH--HHHHHHHHHhhccCCCCCcHHHHHhhhccc
Q 005604 344 PRN-FIIDQTNVFKSARKRKLRLFV-NFRKIAVVVFPKP--EDLKIRSVKRFKEMGKEVPADAVNNMLANY 410 (688)
Q Consensus 344 G~n-VILDaTNl~rs~R~~~l~~~a-~~~~~~vV~~~~p--eel~~R~~kR~~~~g~~Vpeevi~~m~a~f 410 (688)
+.. ||+-.+ ....... +...+. .......+.++.+ ++....+.+-..+.+-.+++++++.+.+.|
T Consensus 121 ~~~~vl~~~~-~~~~~~~-l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~ 189 (227)
T PRK08903 121 GQGALLVAGP-AAPLALP-LREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHF 189 (227)
T ss_pred CCcEEEEeCC-CCHHhCC-CCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc
Confidence 664 555443 3322111 111112 1111244556543 333333333222235678899999888743
No 180
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=96.89 E-value=0.013 Score=61.82 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=25.2
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
..+||++-|.-|||||++|++|+++++
T Consensus 70 nSkvI~VeGnI~sGK~klAKelAe~Lg 96 (393)
T KOG3877|consen 70 NSKVIVVEGNIGSGKTKLAKELAEQLG 96 (393)
T ss_pred cceEEEEeCCcccCchhHHHHHHHHhC
Confidence 368999999999999999999999987
No 181
>CHL00181 cbbX CbbX; Provisional
Probab=96.88 E-value=0.015 Score=62.11 Aligned_cols=25 Identities=36% Similarity=0.278 Sum_probs=21.4
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhC
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~ 290 (688)
..-+++.|.||+||||+|+.+++.+
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4458899999999999999997653
No 182
>PHA00729 NTP-binding motif containing protein
Probab=96.87 E-value=0.0082 Score=62.07 Aligned_cols=26 Identities=35% Similarity=0.355 Sum_probs=22.7
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
..-|+++|.||+||||+|.+++..+.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34789999999999999999998753
No 183
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.81 E-value=0.0012 Score=55.25 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=24.1
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEE
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILL 298 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvI 298 (688)
+|+++|.|||||||+++.|.+.+....+.++
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~~~i 31 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVL 31 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhcCCCEEEE
Confidence 4788999999999999999988422235555
No 184
>PRK15453 phosphoribulokinase; Provisional
Probab=96.79 E-value=0.0096 Score=63.48 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=30.6
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCC--ceEEEEcchHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLI 303 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~--k~~vvIStD~I 303 (688)
...+|.++|.|||||||+|+.+++.+.. ....+|+.|..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~y 44 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSF 44 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccc
Confidence 4678999999999999999999876542 23667877754
No 185
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.72 E-value=0.018 Score=60.38 Aligned_cols=25 Identities=36% Similarity=0.310 Sum_probs=21.1
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhC
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~ 290 (688)
..-+++.|+||+||||+|+.+++.+
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHH
Confidence 3457899999999999999998753
No 186
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.68 E-value=0.005 Score=62.21 Aligned_cols=38 Identities=26% Similarity=0.304 Sum_probs=28.8
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCC--CceEEEEcchHH
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLI 303 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~--~k~~vvIStD~I 303 (688)
|++|+|+|++|+||||.+.+|+..+. .++..+|+.|..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~ 40 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTY 40 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTS
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCC
Confidence 57999999999999999888875432 345777888853
No 187
>PRK06893 DNA replication initiation factor; Validated
Probab=96.65 E-value=0.0099 Score=61.21 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=21.0
Q ss_pred eEEEEeccCCCChhHHHHHHHhhC
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDH 290 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~ 290 (688)
..++++|.||+|||++++.++.+.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~ 63 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHY 63 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999998653
No 188
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.63 E-value=0.017 Score=67.60 Aligned_cols=143 Identities=12% Similarity=0.088 Sum_probs=71.3
Q ss_pred EEEEeccCCCChhHHHHHHHhhC----CCceEEEEcchHHHHHhh--c-CCcc-------ccC--CChHHHHHHH--HHH
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNLILEQMK--V-PGLL-------RKH--NYSERFQCLM--GRA 329 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~----~~k~~vvIStD~Ir~~m~--i-~G~~-------r~~--~y~~~~e~l~--~~a 329 (688)
.++|+|.+|+|||++++.++... ....++.|+.+++...+. + .+.. +.. ..-++.+.+. +..
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke~t 395 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKEST 395 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCHHH
Confidence 48999999999999999987653 234466777765443331 0 1100 000 0001111110 011
Q ss_pred HHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHHhc-CCCEEEEEeCCH--HHHHHHHHHhhccCCCCCcHHHHHhh
Q 005604 330 NAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN-FRKIAVVVFPKP--EDLKIRSVKRFKEMGKEVPADAVNNM 406 (688)
Q Consensus 330 ~~~l~~lie~aL~~G~nVILDaTNl~rs~R~~~l~~~a~-~~~~~vV~~~~p--eel~~R~~kR~~~~g~~Vpeevi~~m 406 (688)
...|-.++......++.+|| .++...+.-..+...+.. +.--.++.++.| |+.++-++++.+..+-.+++++++-+
T Consensus 396 qeeLF~l~N~l~e~gk~III-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yL 474 (617)
T PRK14086 396 QEEFFHTFNTLHNANKQIVL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFI 474 (617)
T ss_pred HHHHHHHHHHHHhcCCCEEE-ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 12233455555667777777 444443332222222332 221233455444 33333333443334667888888877
Q ss_pred hcccc
Q 005604 407 LANYV 411 (688)
Q Consensus 407 ~a~fE 411 (688)
..+++
T Consensus 475 a~r~~ 479 (617)
T PRK14086 475 ASRIS 479 (617)
T ss_pred HHhcc
Confidence 77665
No 189
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.61 E-value=0.01 Score=59.99 Aligned_cols=39 Identities=18% Similarity=0.145 Sum_probs=28.7
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC--CceEEEEcchHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLI 303 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~--~k~~vvIStD~I 303 (688)
....++++|.+|+||||+|+.++.... ...++.++.+.+
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 467899999999999999999986542 123556655443
No 190
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.60 E-value=0.0048 Score=60.16 Aligned_cols=35 Identities=34% Similarity=0.461 Sum_probs=27.5
Q ss_pred EEEEeccCCCChhHHHHHHHhhCC--CceEEEEcchH
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNL 302 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~--~k~~vvIStD~ 302 (688)
+++++|.|||||||+++.++..+. ..++.+|+.|.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 689999999999999998876542 23467788774
No 191
>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.60 E-value=0.013 Score=60.42 Aligned_cols=161 Identities=14% Similarity=0.146 Sum_probs=88.9
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccc--cCCC--hHHHHH------HHHHHH-----
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLR--KHNY--SERFQC------LMGRAN----- 330 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r--~~~y--~~~~e~------l~~~a~----- 330 (688)
.+-|+++|+.|+||+|+..+|.++++......+|.++ +..+ .|... .+.+ .++++. +++.+.
T Consensus 37 ~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~tt--r~pr-~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn~ 113 (231)
T KOG0707|consen 37 FKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTT--RTPR-AGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGNK 113 (231)
T ss_pred CceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCC--CCCC-cccccCCcceeccHHHHHHHhhhhhhhhhhhhhccc
Confidence 5789999999999999999999999864455666654 2221 22111 1111 112211 122111
Q ss_pred -HHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHHhcCC-CEEEEEeCC-H-HHHHHHHHHhhccCCCCCcHHHHHhh
Q 005604 331 -AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPK-P-EDLKIRSVKRFKEMGKEVPADAVNNM 406 (688)
Q Consensus 331 -~~l~~lie~aL~~G~nVILDaTNl~rs~R~~~l~~~a~~~-~~~vV~~~~-p-eel~~R~~kR~~~~g~~Vpeevi~~m 406 (688)
..-.+.+++....|+..|+|-- +. -.+.++.-. ..+++++.. + .++.+|+.+| +.+.-++++.++
T Consensus 114 yGtsi~av~~~~~~gk~~ildId-~q------g~~~i~~~~~~~i~i~~~pps~~~~e~rl~~r----gte~~~~l~~r~ 182 (231)
T KOG0707|consen 114 YGTSIAAVQRLMLSGKVCILDID-LQ------GVQPIRATSLDAIYIFIKPPSIKILEERLRAR----GTETEESLLKRL 182 (231)
T ss_pred CCchHHHHHHHHhcCCcceeehh-hc------CceeeecCCCceEEEEecCCcchhHHHHhhcc----CcchHHHHHHHH
Confidence 1112344555678888888852 10 011111112 445666543 3 6889999998 666667777777
Q ss_pred hcccccCCCCCCCCCCCCCcEEEEeccCHHHHHHHHH
Q 005604 407 LANYVLPVNKDTPGSDELFDQVMFVELDREEAQRHLD 443 (688)
Q Consensus 407 ~a~fE~P~~~~~p~~~EgfdeI~~~el~~~ea~~li~ 443 (688)
. .-+.+... +...-.||.++++....+++.+-++
T Consensus 183 ~-sa~~e~~~--~~~~g~~d~~~~ns~~lee~~kel~ 216 (231)
T KOG0707|consen 183 K-SAEEEFEI--LENSGSFDLVIVNSDRLEEAYKELE 216 (231)
T ss_pred H-hhhhhhcc--ccCCccccceecCCCchhhhhhhhh
Confidence 7 33322221 0113458988887544555555444
No 192
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.59 E-value=0.034 Score=59.35 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=26.0
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCCC------ceEEEEcchHHH
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHPE------KRYILLGTNLIL 304 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~~------k~~vvIStD~Ir 304 (688)
.-+++.|+||+||||+|+.+++.+.. ..++.++.+++.
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 35889999999999999777654321 125566655443
No 193
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=96.57 E-value=0.034 Score=54.96 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=26.1
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcc
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvISt 300 (688)
.++++++|.||+||||+.+...+.+- .+.+++.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~--~~~ivNy 36 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELV--KHKIVNY 36 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHh--hceeeeH
Confidence 68999999999999999988887762 1445554
No 194
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.55 E-value=0.0085 Score=61.34 Aligned_cols=139 Identities=15% Similarity=0.207 Sum_probs=69.4
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHH--HHhhc-CCccc--c-----CCChHHH-----HHHHHHHH
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL--EQMKV-PGLLR--K-----HNYSERF-----QCLMGRAN 330 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir--~~m~i-~G~~r--~-----~~y~~~~-----e~l~~~a~ 330 (688)
++|++++|++|+|||.+|-.+++.++ +-+|+.|.+. .++.+ .|... + .-|..+. ..-.+.+.
T Consensus 1 M~v~~i~GpT~tGKt~~ai~lA~~~g---~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~i~a~ea~ 77 (233)
T PF01745_consen 1 MKVYLIVGPTGTGKTALAIALAQKTG---APVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGIINAEEAH 77 (233)
T ss_dssp -EEEEEE-STTSSHHHHHHHHHHHH-----EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S--HHHHH
T ss_pred CcEEEEECCCCCChhHHHHHHHHHhC---CCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCCcCHHHHH
Confidence 36899999999999999999999987 6778778541 22211 11100 0 0111110 00112233
Q ss_pred HHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHHhc--CC----CEEEEEeCCH--HHHHHHHHHhhccC--CCCCcH
Q 005604 331 AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN--FR----KIAVVVFPKP--EDLKIRSVKRFKEM--GKEVPA 400 (688)
Q Consensus 331 ~~l~~lie~aL~~G~nVILDaTNl~rs~R~~~l~~~a~--~~----~~~vV~~~~p--eel~~R~~kR~~~~--g~~Vpe 400 (688)
..|...+.. +..++.|||+...++ +++.+++ +. +..+..+..+ +..+.|.++|.++. ...--.
T Consensus 78 ~~Li~~v~~-~~~~~~~IlEGGSIS------Ll~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ML~p~~~~~ 150 (233)
T PF01745_consen 78 ERLISEVNS-YSAHGGLILEGGSIS------LLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQMLRPDSSGP 150 (233)
T ss_dssp HHHHHHHHT-TTTSSEEEEEE--HH------HHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHHHHS--SSS-
T ss_pred HHHHHHHHh-ccccCceEEeCchHH------HHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHHHhcCCCCCCC
Confidence 333333322 345889999997665 3444443 21 4566666554 67788888886532 112224
Q ss_pred HHHHhhhcccccCC
Q 005604 401 DAVNNMLANYVLPV 414 (688)
Q Consensus 401 evi~~m~a~fE~P~ 414 (688)
.+|+++..-|.-|.
T Consensus 151 Sll~EL~~lW~~p~ 164 (233)
T PF01745_consen 151 SLLEELVALWNDPA 164 (233)
T ss_dssp -HHHHHHHHHTSTT
T ss_pred cHHHHHHHHHhCcc
Confidence 67777776666544
No 195
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.55 E-value=0.0078 Score=67.72 Aligned_cols=41 Identities=29% Similarity=0.259 Sum_probs=32.4
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC--CceEEEEcchHHH
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLIL 304 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~--~k~~vvIStD~Ir 304 (688)
..+.+|+|+|++||||||.+.+|+..+. ++...+|+.|..|
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 4589999999999999999999975542 2346788888644
No 196
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.54 E-value=0.016 Score=59.93 Aligned_cols=143 Identities=10% Similarity=0.054 Sum_probs=67.8
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCC--CceEEEEcchHHHH---HhhcCCccc-cCCChHHHHHHH--HHHHHHHHHHHH
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILE---QMKVPGLLR-KHNYSERFQCLM--GRANAIFDVLLS 338 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~--~k~~vvIStD~Ir~---~m~i~G~~r-~~~y~~~~e~l~--~~a~~~l~~lie 338 (688)
..++++|++|+|||++++.++.... ...+..++.+.... ++. ..... +.-.-++.+.+. +.....+-.++.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~-~~~~~~dlliiDdi~~~~~~~~~~~~lf~l~n 124 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWFVPEVL-EGMEQLSLVCIDNIECIAGDELWEMAIFDLYN 124 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhhhHHHH-HHhhhCCEEEEeChhhhcCCHHHHHHHHHHHH
Confidence 4789999999999999998876432 12244454443211 000 00000 000011111110 001112233444
Q ss_pred HHhcCCC-eEEEEcCCCCHHHHHHHHHHHhc-CCCEEEEEeCCH--HHHHHHHHHhhccCCCCCcHHHHHhhhcccc
Q 005604 339 RASRTPR-NFIIDQTNVFKSARKRKLRLFVN-FRKIAVVVFPKP--EDLKIRSVKRFKEMGKEVPADAVNNMLANYV 411 (688)
Q Consensus 339 ~aL~~G~-nVILDaTNl~rs~R~~~l~~~a~-~~~~~vV~~~~p--eel~~R~~kR~~~~g~~Vpeevi~~m~a~fE 411 (688)
...+.|+ .+|+-.++...+.-. ....++. ..--.++.+..+ +++++.++++....+-.+++++++-+..+++
T Consensus 125 ~~~e~g~~~li~ts~~~p~~l~~-~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~ 200 (235)
T PRK08084 125 RILESGRTRLLITGDRPPRQLNL-GLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLD 200 (235)
T ss_pred HHHHcCCCeEEEeCCCChHHcCc-ccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Confidence 4555665 678865544322111 1222222 111134445443 4555555544443466789999998888775
No 197
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.52 E-value=0.025 Score=51.25 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=22.8
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhC
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~ 290 (688)
...++++|.||+||||+++.++...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999876
No 198
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.52 E-value=0.039 Score=62.52 Aligned_cols=144 Identities=13% Similarity=0.125 Sum_probs=70.7
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCC----CceEEEEcchHHHHHhh--c-CCcc-------ccC--CChHHHHHHHH--H
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNLILEQMK--V-PGLL-------RKH--NYSERFQCLMG--R 328 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~----~k~~vvIStD~Ir~~m~--i-~G~~-------r~~--~y~~~~e~l~~--~ 328 (688)
.-++++|.||+|||++++.++.+.. ...++.++.+.+..++. + .+.. +.. ..-++.+.+.. .
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~ 228 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKER 228 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcCCHH
Confidence 4588999999999999999986642 23456666655433221 0 0000 000 00011111100 1
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHHhc-CCCEEEEEeCCH--HHHHHHHHHhhccCCCCCcHHHHHh
Q 005604 329 ANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN-FRKIAVVVFPKP--EDLKIRSVKRFKEMGKEVPADAVNN 405 (688)
Q Consensus 329 a~~~l~~lie~aL~~G~nVILDaTNl~rs~R~~~l~~~a~-~~~~~vV~~~~p--eel~~R~~kR~~~~g~~Vpeevi~~ 405 (688)
..+.+-.++......++.+||-++. ....-..+-..+.. +..-.++.++.| +++.+-++++....+-.+++++++.
T Consensus 229 ~~~~l~~~~n~l~~~~~~iiits~~-~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ 307 (450)
T PRK00149 229 TQEEFFHTFNALHEAGKQIVLTSDR-PPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEF 307 (450)
T ss_pred HHHHHHHHHHHHHHCCCcEEEECCC-CHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 1122333444555677777775543 33322111122222 111134556554 4444444444433355788988888
Q ss_pred hhcccc
Q 005604 406 MLANYV 411 (688)
Q Consensus 406 m~a~fE 411 (688)
+..++.
T Consensus 308 ia~~~~ 313 (450)
T PRK00149 308 IAKNIT 313 (450)
T ss_pred HHcCcC
Confidence 777654
No 199
>KOG1477 consensus SPRY domain-containing proteins [General function prediction only]
Probab=96.50 E-value=0.0012 Score=74.78 Aligned_cols=76 Identities=20% Similarity=0.235 Sum_probs=57.9
Q ss_pred CCceeeCCC-cccCCCCCCCCCEEEEEEecCCCCccEEEEEECCeeeeeeeeccCCCCCcccccccccccccCCcceeEE
Q 005604 141 TGKFSHGGN-FLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHI 219 (688)
Q Consensus 141 ~G~~~~~~~-~~~YG~~f~~GDVIGC~LDl~~~p~~~I~FtkNG~~LG~Af~~~~~~~~L~la~~d~~g~~~~~~lfPaV 219 (688)
+|.++.... ...||+.|.+||||||+||.-. ++-+|++||.++|++|--. ...++|.|
T Consensus 7 ~~~~~~~~~~~~~~g~~~~~~d~i~~~~~~~~---~~~~~~~~~~~~gi~f~~~------------------~~~~~~dv 65 (469)
T KOG1477|consen 7 DGNFFLKSGDGQLYGPVFTTGDVIPCEVNTIN---GSDFFTKNGPDMGIAFYTP------------------PALLYHDV 65 (469)
T ss_pred chhhhhhcccccccCCcCCccccccceEeccC---CceeEEEEcCCcceeeecC------------------ccccCCCc
Confidence 344443332 3589999999999999999998 8999999999999998621 12356777
Q ss_pred EEc--CeEEEEEccCCCCCC
Q 005604 220 LLK--NVVVVMQFSVEQGLI 237 (688)
Q Consensus 220 sl~--n~~v~vNFG~~~~~~ 237 (688)
.+. +..+..||+..+|.+
T Consensus 66 g~~~~~~~~~~N~~~~~Fe~ 85 (469)
T KOG1477|consen 66 GVVQAGEPLPANFGIYYFEF 85 (469)
T ss_pred ceeeCCCCCCcccccceeee
Confidence 766 778888888877654
No 200
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.50 E-value=0.0029 Score=56.73 Aligned_cols=37 Identities=32% Similarity=0.434 Sum_probs=30.0
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCc--eEEEEcchH
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNL 302 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k--~~vvIStD~ 302 (688)
...++++|+||+||||+++.++..+... ..+.++.+.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~ 40 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGED 40 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEE
Confidence 4579999999999999999999888754 366676653
No 201
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.47 E-value=0.072 Score=55.26 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=23.5
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
..+++++|.+|+||||+++.++..+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 55889999999999999999998865
No 202
>PRK10867 signal recognition particle protein; Provisional
Probab=96.47 E-value=0.0073 Score=68.11 Aligned_cols=40 Identities=40% Similarity=0.514 Sum_probs=31.0
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC---CceEEEEcchHH
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTNLI 303 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~---~k~~vvIStD~I 303 (688)
..+.+|+|+|++||||||++.+|+..+. ++.+.+|+.|..
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~ 140 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY 140 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 3489999999999999998888876432 245778888853
No 203
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.46 E-value=0.011 Score=66.56 Aligned_cols=40 Identities=38% Similarity=0.447 Sum_probs=32.0
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhC---CCceEEEEcchHH
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDH---PEKRYILLGTNLI 303 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~---~~k~~vvIStD~I 303 (688)
..+.+|+|+|++||||||+|.+|+..+ .++.+.+|+.|..
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~ 139 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY 139 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 358999999999999999988887653 2356788888853
No 204
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.46 E-value=0.012 Score=53.98 Aligned_cols=27 Identities=26% Similarity=0.518 Sum_probs=19.8
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhC
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDH 290 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~ 290 (688)
++..+++++|.+|+|||++++.+++.+
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHh
Confidence 357799999999999999999999875
No 205
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.45 E-value=0.0047 Score=63.60 Aligned_cols=75 Identities=16% Similarity=0.194 Sum_probs=44.2
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccc----cCCChHHHHHHHHHHHHHHHHHHHHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLR----KHNYSERFQCLMGRANAIFDVLLSRA 340 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r----~~~y~~~~e~l~~~a~~~l~~lie~a 340 (688)
.+.+++++|.||+||||+|+.+.. ..++|+.|.....+ .|... +......|+.+.+... .++..
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~-----~~~~~~~d~~~~~l--~g~~~~~v~~~d~~~~~~~~~d~l~-----~~~~~ 78 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPG-----KTLVLSFDMSSKVL--IGDENVDIADHDDMPPIQAMVEFYV-----MQNIQ 78 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCC-----CCEEEeccccchhc--cCCCCCceeecCCCCCHHHHHHHHH-----HHHhc
Confidence 367899999999999999998842 15678777533322 23211 0011223444444332 22333
Q ss_pred hcCCCeEEEEc
Q 005604 341 SRTPRNFIIDQ 351 (688)
Q Consensus 341 L~~G~nVILDa 351 (688)
+..=..||||.
T Consensus 79 ~~~ydtVVIDs 89 (220)
T TIGR01618 79 AVKYDNIVIDN 89 (220)
T ss_pred cccCCEEEEec
Confidence 44556899997
No 206
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.43 E-value=0.0054 Score=59.26 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=17.9
Q ss_pred EEEeccCCCChhHHHHHHHhh
Q 005604 269 MMMVGLPASGKTTWAEKWVKD 289 (688)
Q Consensus 269 IILvGLPGSGKST~Ar~L~~~ 289 (688)
|+++|.||+||||+++.|++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999987
No 207
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.42 E-value=0.027 Score=62.73 Aligned_cols=39 Identities=10% Similarity=0.127 Sum_probs=28.1
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCC----CceEEEEcchHHH
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNLIL 304 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~----~k~~vvIStD~Ir 304 (688)
...++++|.+|+|||++++.++.++. ...++.++.+.+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~ 178 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFT 178 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHH
Confidence 34688999999999999999876542 2345667765543
No 208
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.40 E-value=0.019 Score=65.01 Aligned_cols=40 Identities=30% Similarity=0.351 Sum_probs=31.6
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCCC--ceEEEEcchHH
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLI 303 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~~--k~~vvIStD~I 303 (688)
..+.+|+|+|++|+||||.+.+|+..+.. +...+|+.|..
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 35889999999999999999999765542 34667888754
No 209
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.39 E-value=0.009 Score=65.56 Aligned_cols=100 Identities=22% Similarity=0.165 Sum_probs=60.5
Q ss_pred CCCcceEEEEeccCCCChhHHHHHHHhhCCCce--EEEEcchHHH----HHhhcCCccccC-C---ChHHHHHHHHHHHH
Q 005604 262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKR--YILLGTNLIL----EQMKVPGLLRKH-N---YSERFQCLMGRANA 331 (688)
Q Consensus 262 ~~~~~~LIILvGLPGSGKST~Ar~L~~~~~~k~--~vvIStD~Ir----~~m~i~G~~r~~-~---y~~~~e~l~~~a~~ 331 (688)
.+..+.||+++||-||||||...+|+-.+..++ ...|+.|+.| +++..++....- . |++. .-..
T Consensus 97 ~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~--dpv~---- 170 (483)
T KOG0780|consen 97 KKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEA--DPVK---- 170 (483)
T ss_pred ccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEeccccc--chHH----
Confidence 456799999999999999999988886665433 4567888765 344332211011 1 1111 1111
Q ss_pred HHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHHh
Q 005604 332 IFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFV 367 (688)
Q Consensus 332 ~l~~lie~aL~~G~nVILDaTNl~rs~R~~~l~~~a 367 (688)
....-++++-+.+..|||=+|.-+..+-..+++...
T Consensus 171 ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~ 206 (483)
T KOG0780|consen 171 IASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMK 206 (483)
T ss_pred HHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHH
Confidence 122345667788888777666666665555555544
No 210
>PLN03025 replication factor C subunit; Provisional
Probab=96.38 E-value=0.0082 Score=64.77 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.2
Q ss_pred EEEeccCCCChhHHHHHHHhhC
Q 005604 269 MMMVGLPASGKTTWAEKWVKDH 290 (688)
Q Consensus 269 IILvGLPGSGKST~Ar~L~~~~ 290 (688)
++++|+||+||||+|+.+++.+
T Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 37 LILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999875
No 211
>PRK14974 cell division protein FtsY; Provisional
Probab=96.35 E-value=0.0091 Score=65.27 Aligned_cols=41 Identities=20% Similarity=0.185 Sum_probs=30.1
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCCC--ceEEEEcchHHH
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLIL 304 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~~--k~~vvIStD~Ir 304 (688)
..+.+|+++|+||+||||.+.+++..+.. ....++..|..|
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R 180 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFR 180 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCc
Confidence 35789999999999999988777654432 235567778543
No 212
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=96.33 E-value=0.058 Score=54.77 Aligned_cols=37 Identities=14% Similarity=0.242 Sum_probs=29.4
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHh
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m 307 (688)
.++=++|--||||||+++.+. .++ +-+|.+|.+-+++
T Consensus 2 ~iVGLTGgiatGKStVs~~f~-~~G---~~vIDaD~vaR~v 38 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFK-ALG---IPVIDADVVAREV 38 (225)
T ss_pred eEEEeecccccChHHHHHHHH-HcC---CcEecHHHHHHHH
Confidence 467789999999999999886 454 6789999765543
No 213
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.29 E-value=0.011 Score=66.21 Aligned_cols=43 Identities=16% Similarity=0.222 Sum_probs=32.4
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHh
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m 307 (688)
..+.|+++|.+||||||++++|++.++...+.-++.+.+.+++
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~~~~~ 260 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVFSHL 260 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHHHHhh
Confidence 4678999999999999999999988764323345556665554
No 214
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.29 E-value=0.012 Score=58.40 Aligned_cols=139 Identities=15% Similarity=0.058 Sum_probs=70.4
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCC-ceEEEEcchHHHHHhhcCC-ccccCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLILEQMKVPG-LLRKHNYSERFQCLMGRANAIFDVLLSRASR 342 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~-k~~vvIStD~Ir~~m~i~G-~~r~~~y~~~~e~l~~~a~~~l~~lie~aL~ 342 (688)
..++++++|.+||||||+.+.|+...+. .+.+.|. |. .++.+.. ..-...+........ ....+.++++.+++
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ie-d~--~E~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~lR 98 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPPDERIITIE-DT--AELQLPHPNWVRLVTRPGNVEGS--GEVTMADLLRSALR 98 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEC-Cc--cccCCCCCCEEEEEEecCCCCCC--CccCHHHHHHHHhc
Confidence 4678999999999999999999876653 3445552 21 1111110 000000000000000 00012235556667
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhc-CC-CEEEEEeCCHHHHHHHHHHhhccCCCCCcHHHHHhhhccc
Q 005604 343 TPRNFIIDQTNVFKSARKRKLRLFVN-FR-KIAVVVFPKPEDLKIRSVKRFKEMGKEVPADAVNNMLANY 410 (688)
Q Consensus 343 ~G~nVILDaTNl~rs~R~~~l~~~a~-~~-~~~vV~~~~peel~~R~~kR~~~~g~~Vpeevi~~m~a~f 410 (688)
...++|+=.---..+... +++.+.. .. -+.-++..++.+.++|+..+....+..+++ +.+.+...+
T Consensus 99 ~~pd~i~igEir~~ea~~-~~~a~~tGh~g~~~T~Ha~s~~~~~~Rl~~~~~~~~~~~~~-~~~~i~~~~ 166 (186)
T cd01130 99 MRPDRIIVGEVRGGEALD-LLQAMNTGHPGGMTTIHANSAEEALTRLELLPSNVPLGRPL-LREQIKEAI 166 (186)
T ss_pred cCCCEEEEEccCcHHHHH-HHHHHhcCCCCceeeecCCCHHHHHHHHHHHHhhcCccHHH-HHHHHHHhC
Confidence 666666655434455433 4544322 21 334445566788889999886554444444 333333333
No 215
>PRK08727 hypothetical protein; Validated
Probab=96.25 E-value=0.05 Score=56.21 Aligned_cols=36 Identities=17% Similarity=0.196 Sum_probs=25.4
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCCC--ceEEEEcchH
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNL 302 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~~--k~~vvIStD~ 302 (688)
..++++|.+|+|||++++.++..... ...+.++.+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~ 79 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA 79 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH
Confidence 45999999999999999998644321 2345555543
No 216
>PRK06620 hypothetical protein; Validated
Probab=96.24 E-value=0.02 Score=58.64 Aligned_cols=133 Identities=13% Similarity=0.181 Sum_probs=65.1
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRN 346 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL~~G~n 346 (688)
..++++|+|||||||+++.++.... ...++.....+......+. -.-++.+...+ ..+-.++..+.+.|+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~~~~~~~~~~~~~d~---lliDdi~~~~~---~~lf~l~N~~~e~g~~ 115 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN---AYIIKDIFFNEEILEKYNA---FIIEDIENWQE---PALLHIFNIINEKQKY 115 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC---CEEcchhhhchhHHhcCCE---EEEeccccchH---HHHHHHHHHHHhcCCE
Confidence 4689999999999999999877654 2333322111111000000 00000000101 1233344555567888
Q ss_pred EEEEcCCCCHHHHHHHHHHHhc-CCCEEEEEeCCH--HHHHHHHHHhhccCCCCCcHHHHHhhhcccc
Q 005604 347 FIIDQTNVFKSARKRKLRLFVN-FRKIAVVVFPKP--EDLKIRSVKRFKEMGKEVPADAVNNMLANYV 411 (688)
Q Consensus 347 VILDaTNl~rs~R~~~l~~~a~-~~~~~vV~~~~p--eel~~R~~kR~~~~g~~Vpeevi~~m~a~fE 411 (688)
+|+-++..-... . +..+.. .....++.++.+ +++...++++....+-.+++++++-+..++.
T Consensus 116 ilits~~~p~~l--~-l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~ 180 (214)
T PRK06620 116 LLLTSSDKSRNF--T-LPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLP 180 (214)
T ss_pred EEEEcCCCcccc--c-hHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcc
Confidence 888775333321 1 122222 111124455543 3433333333332355789999988887774
No 217
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=96.21 E-value=0.082 Score=62.91 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=33.0
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHh
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m 307 (688)
..+|.+.|++||||||+|+.|++.++ +.+|+++.+.+.+
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~~---~~~~~~~~~~~~~ 480 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEALG---YHYLDSGALYRLT 480 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHhC---CeEecHHHhhhHH
Confidence 45788899999999999999999987 6778888766554
No 218
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.18 E-value=0.014 Score=60.25 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=25.5
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcc
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvISt 300 (688)
..=+++.|+||.||||+|+-++.+... .+..+|.
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~~-~~~~~sg 83 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELGV-NFKITSG 83 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT---EEEEEC
T ss_pred cceEEEECCCccchhHHHHHHHhccCC-CeEeccc
Confidence 345899999999999999999999873 3444544
No 219
>PRK05642 DNA replication initiation factor; Validated
Probab=96.17 E-value=0.019 Score=59.40 Aligned_cols=142 Identities=11% Similarity=0.105 Sum_probs=66.9
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCC--CceEEEEcchHHHHHhh-cCCccccCC--ChHHHHHHH--HHHHHHHHHHHHH
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMK-VPGLLRKHN--YSERFQCLM--GRANAIFDVLLSR 339 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~--~k~~vvIStD~Ir~~m~-i~G~~r~~~--y~~~~e~l~--~~a~~~l~~lie~ 339 (688)
..++++|.+|+|||++++.++.... ...++.++.+++..... +....+... .-+..+.+. ......+-.++..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~ 125 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQYELVCLDDLDVIAGKADWEEALFHLFNR 125 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhhhhCCEEEEechhhhcCChHHHHHHHHHHHH
Confidence 5689999999999999999875321 23466777765432110 000000000 000001000 0011123345555
Q ss_pred HhcCCCeEEEEcCCCCHHHHHHHHHHHhcCCCE---EEEEeCCH--HHHHHHHHHhhccCCCCCcHHHHHhhhcccc
Q 005604 340 ASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKI---AVVVFPKP--EDLKIRSVKRFKEMGKEVPADAVNNMLANYV 411 (688)
Q Consensus 340 aL~~G~nVILDaTNl~rs~R~~~l~~~a~~~~~---~vV~~~~p--eel~~R~~kR~~~~g~~Vpeevi~~m~a~fE 411 (688)
...+|+.+|+=++..-.+... ....+.. ++ .++-++.+ ++.++-++++....+-.+++++++-+..+++
T Consensus 126 ~~~~g~~ilits~~~p~~l~~-~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~ 199 (234)
T PRK05642 126 LRDSGRRLLLAASKSPRELPI-KLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGT 199 (234)
T ss_pred HHhcCCEEEEeCCCCHHHcCc-cCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcC
Confidence 556677777766533221110 0111111 22 22334442 3444433333333355688888888887775
No 220
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.14 E-value=0.068 Score=61.12 Aligned_cols=27 Identities=26% Similarity=0.241 Sum_probs=23.4
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
-+..++++|+||+||||+|+.+++.+.
T Consensus 35 l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 35 ISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 356789999999999999999988764
No 221
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=96.13 E-value=0.053 Score=57.00 Aligned_cols=94 Identities=18% Similarity=0.187 Sum_probs=55.4
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHH--hcCC
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRA--SRTP 344 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~a--L~~G 344 (688)
.+||++|++|||||+-++.| ++++ |+.+ |.+ +- .-+.++.+ ++... ....
T Consensus 2 ~lvIVTGlSGAGKsvAl~~l-EDlG---yycv--DNL------Pp--------~Llp~~~~--------~~~~~~~~~~k 53 (286)
T COG1660 2 RLVIVTGLSGAGKSVALRVL-EDLG---YYCV--DNL------PP--------QLLPKLAD--------LMLTLESRITK 53 (286)
T ss_pred cEEEEecCCCCcHHHHHHHH-HhcC---eeee--cCC------CH--------HHHHHHHH--------HHhhcccCCce
Confidence 58999999999998877776 5666 7666 421 10 10111111 11111 1244
Q ss_pred CeEEEEcCCCC-HHHHHHHHHHHhcCC--CEEEEEeCCH-HHHHHHHH
Q 005604 345 RNFIIDQTNVF-KSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSV 388 (688)
Q Consensus 345 ~nVILDaTNl~-rs~R~~~l~~~a~~~--~~~vV~~~~p-eel~~R~~ 388 (688)
.-|++|--+.. .+.-..++..+++.+ .+.++|+++. +++++|-+
T Consensus 54 vAv~iDiRs~~~~~~l~~~l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~ 101 (286)
T COG1660 54 VAVVIDVRSREFFGDLEEVLDELKDNGDIDPRVLFLEADDETLVRRYS 101 (286)
T ss_pred EEEEEecccchhHHHHHHHHHHHHhcCCCCceEEEEECchhHHHHHHh
Confidence 57999975542 122233444555442 4789999986 78988876
No 222
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=96.12 E-value=0.013 Score=59.40 Aligned_cols=37 Identities=24% Similarity=0.261 Sum_probs=31.3
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHH
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL 304 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir 304 (688)
.-||-+.|...|||||+|+.|.+-+++ ..+|+.|+..
T Consensus 4 ~~ivgiSG~TnsGKTTLak~l~~~f~~--~~lIhqDDFy 40 (225)
T KOG3308|consen 4 TLIVGISGCTNSGKTTLAKSLHRFFPG--CSLIHQDDFY 40 (225)
T ss_pred EEEEEeecccCCCHhHHHHHHHHHccC--Ceeecccccc
Confidence 457788999999999999999998885 6688888654
No 223
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.12 E-value=0.019 Score=56.66 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=25.2
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEEcc
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvISt 300 (688)
++++.|.+|||||+||.+++.... ++.+.|.+
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~-~~~~y~at 32 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELG-GPVTYIAT 32 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcC-CCeEEEEc
Confidence 478999999999999999987754 34555544
No 224
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.12 E-value=0.042 Score=59.40 Aligned_cols=118 Identities=13% Similarity=0.195 Sum_probs=67.9
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHH--HHhhc----------CCcccc-C-CChHHHHHHHHHHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL--EQMKV----------PGLLRK-H-NYSERFQCLMGRAN 330 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir--~~m~i----------~G~~r~-~-~y~~~~e~l~~~a~ 330 (688)
.-+||++.|..|||||-+|-.|+.+++ ..+|++|.+. +-+.+ .|.... . ....+.+....+-.
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~---~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~ 82 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFP---GEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFE 82 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCC---ceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHH
Confidence 367999999999999999999999988 5788887431 00000 010000 0 00011111111111
Q ss_pred HHHHHHHHHHhcCCC-eEEEEcCCCCHHHHHHHHHHHhc-------------------C-CCEEEEEeCCH-HHHHHHHH
Q 005604 331 AIFDVLLSRASRTPR-NFIIDQTNVFKSARKRKLRLFVN-------------------F-RKIAVVVFPKP-EDLKIRSV 388 (688)
Q Consensus 331 ~~l~~lie~aL~~G~-nVILDaTNl~rs~R~~~l~~~a~-------------------~-~~~~vV~~~~p-eel~~R~~ 388 (688)
......++...++|+ .+|+=.||++-.. ++.+ . ...|+++++++ ..+-+|+.
T Consensus 83 ~~a~~aie~I~~rgk~PIv~GGs~~yi~a------l~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~~~VL~~~l~ 156 (348)
T KOG1384|consen 83 DDASRAIEEIHSRGKLPIVVGGSNSYLQA------LLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDADQAVLFERLD 156 (348)
T ss_pred HHHHHHHHHHHhCCCCCEEeCCchhhHHH------HhhcCCCcccCcccccCCCCCcccccceEEEEEecchHHHHHHHH
Confidence 112235556667777 5777778886221 1222 0 13688899887 68889999
Q ss_pred Hhh
Q 005604 389 KRF 391 (688)
Q Consensus 389 kR~ 391 (688)
+|.
T Consensus 157 ~RV 159 (348)
T KOG1384|consen 157 KRV 159 (348)
T ss_pred HHH
Confidence 996
No 225
>PF13173 AAA_14: AAA domain
Probab=96.11 E-value=0.031 Score=51.99 Aligned_cols=93 Identities=14% Similarity=0.237 Sum_probs=53.0
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCC-CceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP 344 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~-~k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL~~G 344 (688)
.+++++.|+.|+||||+++++++++. .+.++.|+.|..+.... ...+ ..+.+.+......
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~-----------~~~~--------~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRL-----------ADPD--------LLEYFLELIKPGK 62 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHH-----------hhhh--------hHHHHHHhhccCC
Confidence 36899999999999999999998764 23466666554332100 0000 0111222212356
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHhcCC-CEEEEEeC
Q 005604 345 RNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFP 378 (688)
Q Consensus 345 ~nVILDaTNl~rs~R~~~l~~~a~~~-~~~vV~~~ 378 (688)
..||||.-...+.... .++.+.+.. ...+|+.-
T Consensus 63 ~~i~iDEiq~~~~~~~-~lk~l~d~~~~~~ii~tg 96 (128)
T PF13173_consen 63 KYIFIDEIQYLPDWED-ALKFLVDNGPNIKIILTG 96 (128)
T ss_pred cEEEEehhhhhccHHH-HHHHHHHhccCceEEEEc
Confidence 6799998666655544 355555543 44554443
No 226
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.09 E-value=0.012 Score=62.49 Aligned_cols=40 Identities=25% Similarity=0.324 Sum_probs=30.9
Q ss_pred CCcceEEEEeccCCCChhHHHHHHHhhCCC--ceEEEEcchH
Q 005604 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNL 302 (688)
Q Consensus 263 ~~~~~LIILvGLPGSGKST~Ar~L~~~~~~--k~~vvIStD~ 302 (688)
..++++|+++|++|+||||.+.+|+..+.. +...+|..|.
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 345789999999999999999888765432 3466788774
No 227
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.06 E-value=0.019 Score=60.29 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=25.7
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEEc
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIS 299 (688)
..-++|.|.||+|||++|+.+++.++ ..++.++
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg-~~~~~i~ 53 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRD-RPVMLIN 53 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC-CCEEEEe
Confidence 34567899999999999999998765 3455553
No 228
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.04 E-value=0.097 Score=59.34 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=27.8
Q ss_pred EEEEeccCCCChhHHHHHHHhhC----CCceEEEEcchHHHH
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNLILE 305 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~----~~k~~vvIStD~Ir~ 305 (688)
-++++|.+|+|||++++.++..+ ++..++.++.+++..
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~ 173 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN 173 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH
Confidence 48999999999999999887653 333466666655443
No 229
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.88 E-value=0.14 Score=50.00 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=63.0
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC-CceEEEEcchHH--------HHHhhc-CCccccCCCh-HHHHHHHHHHHHHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGTNLI--------LEQMKV-PGLLRKHNYS-ERFQCLMGRANAIF 333 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~-~k~~vvIStD~I--------r~~m~i-~G~~r~~~y~-~~~e~l~~~a~~~l 333 (688)
..+++.++|.+||||||+.+.++..++ ..+-+.+.-..+ ++.+.. +.. ...+. ..++.+...-.+..
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~--~~~~~~t~~e~lLS~G~~~r 104 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQD--PFLFSGTIRENILSGGQRQR 104 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCC--chhccchHHHHhhCHHHHHH
Confidence 478999999999999999999987654 223344432111 111110 110 00111 11111111111111
Q ss_pred HHHHHHHhcCCCeEEEEc--CCCCHHHHHHHHHHHhcCC-CEEEEEe-CCHHHH
Q 005604 334 DVLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR-KIAVVVF-PKPEDL 383 (688)
Q Consensus 334 ~~lie~aL~~G~nVILDa--TNl~rs~R~~~l~~~a~~~-~~~vV~~-~~peel 383 (688)
-.++...+.....+|+|. ..+....+..+++.+.+.. ..+++++ +..+++
T Consensus 105 l~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 158 (171)
T cd03228 105 IAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH
Confidence 224444456778999995 6788888888777776643 3455544 334443
No 230
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.85 E-value=0.033 Score=60.52 Aligned_cols=40 Identities=28% Similarity=0.326 Sum_probs=31.5
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC--CceEEEEcchHH
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLI 303 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~--~k~~vvIStD~I 303 (688)
..+.+|+++|++|+||||.+..|+..+. .+.+.++..|..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~ 153 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF 153 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence 4589999999999999999999986543 234667777753
No 231
>COG5324 Uncharacterized conserved protein [Function unknown]
Probab=95.84 E-value=0.079 Score=59.55 Aligned_cols=161 Identities=16% Similarity=0.170 Sum_probs=95.7
Q ss_pred CCcceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 005604 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASR 342 (688)
Q Consensus 263 ~~~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL~ 342 (688)
.++-+|++-+..-|+||||.|+.|.+-.+ |-+|-.|.+ .|.- .. ..+. +.+....+
T Consensus 371 ~~e~tll~pia~igcgktt~ak~l~~lf~---w~~vqnd~l------sgk~-----~~---k~~~-------kai~~~~r 426 (758)
T COG5324 371 GKEFTLLVPIATIGCGKTTVAKILEKLFG---WPVVQNDNL------SGKG-----GP---KRFA-------KAIIEEFR 426 (758)
T ss_pred cceeEEEEEEEEeccCcccHHHHHHHHcC---CcccccCCC------CCCC-----ch---hHHH-------HHHHHHhc
Confidence 46678999999999999999999988765 767755543 2310 11 1111 12223345
Q ss_pred CCC-eEEEEcCCCCHHHHHHHHHHHhcC-CCEEEEEe---C---CHHHHHHHHHHhhccCC-CCCcH------HHHHhhh
Q 005604 343 TPR-NFIIDQTNVFKSARKRKLRLFVNF-RKIAVVVF---P---KPEDLKIRSVKRFKEMG-KEVPA------DAVNNML 407 (688)
Q Consensus 343 ~G~-nVILDaTNl~rs~R~~~l~~~a~~-~~~~vV~~---~---~peel~~R~~kR~~~~g-~~Vpe------evi~~m~ 407 (688)
.|. .||+|..|....+|..+-..+-.+ ..+.+|-+ . .+|-.+.|+.+|-.... -.++| .++..++
T Consensus 427 ~~~~~v~~drnnh~~~~r~~lq~d~l~~~~~vr~v~~p~~~~~ev~e~~~~rvlqrg~~hqsik~~eg~~kv~~imn~f~ 506 (758)
T COG5324 427 NGHSVVFADRNNHISNMRSTLQTDILALIDGVRFVALPFKHTPEVPEFVQNRVLQRGDRHQSIKVSEGVDKVKAIMNTFY 506 (758)
T ss_pred cCceEEEEcccchhhhhhhhhhcceEEEecCcEEEecccccCcccHHHHHHHHHhccCCccceeeccchHHHHHHHHHHH
Confidence 555 677888888777776522222222 13444433 2 24677889999842211 12332 4555667
Q ss_pred cccccCCCCCCCCCCCCCcEEEEec---cCHHHHHHHHHHHHhcC
Q 005604 408 ANYVLPVNKDTPGSDELFDQVMFVE---LDREEAQRHLDEMKGTL 449 (688)
Q Consensus 408 a~fE~P~~~~~p~~~EgfdeI~~~e---l~~~ea~~li~~~~~~~ 449 (688)
+++++-..+. ..+.-||.++-.+ -+.+.|+.++..+++..
T Consensus 507 k~ykp~~~~~--~~d~~~d~~ield~~~~sl~nar~i~n~~~k~~ 549 (758)
T COG5324 507 KQYKPFDAGN--KHDANYDDIIELDPLIGSLENARRIVNYFKKNI 549 (758)
T ss_pred HhcCCCCCCC--CccccccceeecccccchhhhHHHHHHHHHhhC
Confidence 7776544321 2356688776554 35688999998887655
No 232
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.84 E-value=0.038 Score=61.20 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=27.3
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcc
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvISt 300 (688)
..-=.|+-|+||+||||+|+.++.... ..+..||.
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~~~-~~f~~~sA 81 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGTTN-AAFEALSA 81 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHhhC-CceEEecc
Confidence 345578999999999999999998766 33566654
No 233
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.77 E-value=0.095 Score=59.87 Aligned_cols=28 Identities=29% Similarity=0.216 Sum_probs=24.6
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
+-+..++++|++|+||||+|+.+++.+.
T Consensus 38 ri~ha~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 38 KIGHAYIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3466899999999999999999998875
No 234
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.77 E-value=0.12 Score=52.37 Aligned_cols=55 Identities=22% Similarity=0.272 Sum_probs=35.8
Q ss_pred HHHHh-cCCCeEEEE--cCCCCHHHHHHHHHHHhcCC--CEEEEEeCCHHHHHHHHHHhh
Q 005604 337 LSRAS-RTPRNFIID--QTNVFKSARKRKLRLFVNFR--KIAVVVFPKPEDLKIRSVKRF 391 (688)
Q Consensus 337 ie~aL-~~G~nVILD--aTNl~rs~R~~~l~~~a~~~--~~~vV~~~~peel~~R~~kR~ 391 (688)
|.+|+ .+....|-| ..|+.+..=.+++++|.+.+ ..+|+.-.-+.++..+..+|.
T Consensus 148 IARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rv 207 (223)
T COG2884 148 IARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRV 207 (223)
T ss_pred HHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcE
Confidence 33443 455556666 48999998888899998865 334443333567777776664
No 235
>PF13245 AAA_19: Part of AAA domain
Probab=95.76 E-value=0.013 Score=50.26 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=17.4
Q ss_pred ceEEEEeccCCCChhHHHHHHHh
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVK 288 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~ 288 (688)
..++++.|+|||||||.+..++.
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~ 32 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIA 32 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 56788999999999965544443
No 236
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.76 E-value=0.098 Score=58.51 Aligned_cols=39 Identities=21% Similarity=0.223 Sum_probs=30.0
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCC--ceEEEEcchHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLI 303 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~--k~~vvIStD~I 303 (688)
.+.+|+++|++|+||||++.+|+..+.. +...+|++|..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~ 280 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHS 280 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCc
Confidence 4689999999999999999999865432 23566777753
No 237
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.68 E-value=0.087 Score=64.04 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=24.5
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
+-...+||+|.+|+||||+|+.|++.+.
T Consensus 35 ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 35 RINHAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3467899999999999999999988874
No 238
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.67 E-value=0.058 Score=58.56 Aligned_cols=43 Identities=28% Similarity=0.271 Sum_probs=33.0
Q ss_pred CCcceEEEEeccCCCChhHHHHHHHhhCCC--ceEEEEcchHHHH
Q 005604 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILE 305 (688)
Q Consensus 263 ~~~~~LIILvGLPGSGKST~Ar~L~~~~~~--k~~vvIStD~Ir~ 305 (688)
...|.+|+++|..|+||||-..+|+..+.. +.+++...|++|.
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRA 180 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRA 180 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHH
Confidence 345999999999999999988888765542 4455666788764
No 239
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.64 E-value=0.079 Score=51.84 Aligned_cols=116 Identities=15% Similarity=0.157 Sum_probs=62.0
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC-CceEEEEcch--------HHHHHhhc-CCccccCCCh-HHHHHHHHHHHHHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGTN--------LILEQMKV-PGLLRKHNYS-ERFQCLMGRANAIF 333 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~-~k~~vvIStD--------~Ir~~m~i-~G~~r~~~y~-~~~e~l~~~a~~~l 333 (688)
..+++.++|.+||||||+.+.++.... ..+-+.+.-. .++..+.. +... ..+. ...+.+...-.+..
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~--~~~~~tv~~~lLS~G~~qr 104 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDD--ELFSGSIAENILSGGQRQR 104 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCC--ccccCcHHHHCcCHHHHHH
Confidence 478999999999999999999987643 2233444321 11221111 1100 0011 11111111111111
Q ss_pred HHHHHHHhcCCCeEEEEc--CCCCHHHHHHHHHHHhcCC--CEEEEEe-CCHHH
Q 005604 334 DVLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVF-PKPED 382 (688)
Q Consensus 334 ~~lie~aL~~G~nVILDa--TNl~rs~R~~~l~~~a~~~--~~~vV~~-~~pee 382 (688)
-.++...+.....+|+|- +.+....|..+++.+.+.. ...++++ ...++
T Consensus 105 v~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~ 158 (173)
T cd03246 105 LGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPET 158 (173)
T ss_pred HHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 224444466778899995 6788888888777776532 3455554 33443
No 240
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.64 E-value=0.058 Score=57.82 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.2
Q ss_pred EEEEeccCCCChhHHHHHHHhhCC
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
.++++|+||+||||+|+.+++.+.
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 578999999999999999988764
No 241
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.08 Score=58.47 Aligned_cols=37 Identities=22% Similarity=0.386 Sum_probs=29.0
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHH
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~I 303 (688)
=+=|+|+|+||+|||-+|++++.+.+. -++-||+-++
T Consensus 245 WkgvLm~GPPGTGKTlLAKAvATEc~t-TFFNVSsstl 281 (491)
T KOG0738|consen 245 WKGVLMVGPPGTGKTLLAKAVATECGT-TFFNVSSSTL 281 (491)
T ss_pred cceeeeeCCCCCcHHHHHHHHHHhhcC-eEEEechhhh
Confidence 367899999999999999999988763 3555665443
No 242
>PRK13695 putative NTPase; Provisional
Probab=95.63 E-value=0.085 Score=51.62 Aligned_cols=23 Identities=30% Similarity=0.283 Sum_probs=19.5
Q ss_pred EEEEeccCCCChhHHHHHHHhhC
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDH 290 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~ 290 (688)
-|+++|.+|+||||+++.+...+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999976553
No 243
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.62 E-value=0.085 Score=63.07 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=24.5
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
+-...+||+|.+|+||||+|+.|++.+.
T Consensus 36 RL~HAyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 36 RLHHAYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3467889999999999999999998775
No 244
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.62 E-value=0.012 Score=63.15 Aligned_cols=40 Identities=23% Similarity=0.125 Sum_probs=30.1
Q ss_pred CCcceEEEEeccCCCChhHHHHHHHhhCC----CceEEEEcchH
Q 005604 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNL 302 (688)
Q Consensus 263 ~~~~~LIILvGLPGSGKST~Ar~L~~~~~----~k~~vvIStD~ 302 (688)
.+.+.+|-++|.+||||||+|+.|...+. ...+.+|+.|.
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~ 102 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDG 102 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccc
Confidence 45688999999999999999987754432 12366778774
No 245
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.62 E-value=0.27 Score=50.50 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=29.0
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHH
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~I 303 (688)
.+|-+=|+.||||||+|+.+++.++ +..|++-.+
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg---~~yldTGam 38 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLG---FHYLDTGAM 38 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhC---CCeecccHH
Confidence 5788889999999999999999998 777776443
No 246
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.60 E-value=0.11 Score=58.95 Aligned_cols=144 Identities=14% Similarity=0.196 Sum_probs=67.8
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCC--CceEEEEcchHHHHHhh--c-CCcc-------ccC--CChHHHHHHH--HHHH
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMK--V-PGLL-------RKH--NYSERFQCLM--GRAN 330 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~--~k~~vvIStD~Ir~~m~--i-~G~~-------r~~--~y~~~~e~l~--~~a~ 330 (688)
.-+++.|.+|+|||++++.++..+. ...++.++.+.+...+. + .+.. +.. ..-++.+.+. +...
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~~~q 221 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGATQ 221 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCChhhH
Confidence 4578899999999999999986542 23456676654322211 0 1100 000 0001111110 0111
Q ss_pred HHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHHhc-CCCEEEEEeCCH--HHHHHHHHHhhccCCCCCcHHHHHhhh
Q 005604 331 AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN-FRKIAVVVFPKP--EDLKIRSVKRFKEMGKEVPADAVNNML 407 (688)
Q Consensus 331 ~~l~~lie~aL~~G~nVILDaTNl~rs~R~~~l~~~a~-~~~~~vV~~~~p--eel~~R~~kR~~~~g~~Vpeevi~~m~ 407 (688)
+.+-.++......|+.+|+-++.. ...-..+...+.. +..-.++-++.+ +++..-++++....+-.+++++++-+.
T Consensus 222 eelf~l~N~l~~~~k~IIlts~~~-p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la 300 (445)
T PRK12422 222 EEFFHTFNSLHTEGKLIVISSTCA-PQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLI 300 (445)
T ss_pred HHHHHHHHHHHHCCCcEEEecCCC-HHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 222234433445677788776543 2221111222221 211134445443 444444444433345678888888776
Q ss_pred cccc
Q 005604 408 ANYV 411 (688)
Q Consensus 408 a~fE 411 (688)
.++.
T Consensus 301 ~~~~ 304 (445)
T PRK12422 301 EALS 304 (445)
T ss_pred HhcC
Confidence 6554
No 247
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=95.59 E-value=0.033 Score=58.94 Aligned_cols=127 Identities=19% Similarity=0.292 Sum_probs=67.6
Q ss_pred CCCcceEEEEeccCCCChhHHHHHHHhhCC---Cc-eEEEEcch------HHHHHhhc---CCccccCCChH-HHHHHHH
Q 005604 262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHP---EK-RYILLGTN------LILEQMKV---PGLLRKHNYSE-RFQCLMG 327 (688)
Q Consensus 262 ~~~~~~LIILvGLPGSGKST~Ar~L~~~~~---~k-~~vvIStD------~Ir~~m~i---~G~~r~~~y~~-~~e~l~~ 327 (688)
+.+.+.+|-++|.||+||||.|+.|...+. +. .+-+|-+| .++++.++ .|... .|.- ..-.+..
T Consensus 78 ~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPe--SyD~~~ll~fl~ 155 (283)
T COG1072 78 NQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPE--SYDVAALLRFLS 155 (283)
T ss_pred CCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCc--cccHHHHHHHHH
Confidence 456789999999999999999998875443 21 14455555 33443322 22110 1211 1111111
Q ss_pred HHHH--------HHHHHHHH-------HhcCCCeEEEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHHhh
Q 005604 328 RANA--------IFDVLLSR-------ASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (688)
Q Consensus 328 ~a~~--------~l~~lie~-------aL~~G~nVILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~kR~ 391 (688)
..+. ....++.. ....-+.||++..|+...... +-.+.++-.+. ||++++ +.+.+|+.+|-
T Consensus 156 ~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p--~~~~sdffDfS-IyvDa~~~~le~wyi~Rf 232 (283)
T COG1072 156 DVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEP--WLFLSDFFDFS-IYVDADEELLEERYIERF 232 (283)
T ss_pred HHhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCc--cccccccceEE-EEecCCHHHHHHHHHHHH
Confidence 1110 00011111 134556788888887654432 11223332333 488887 68889999996
Q ss_pred cc
Q 005604 392 KE 393 (688)
Q Consensus 392 ~~ 393 (688)
..
T Consensus 233 l~ 234 (283)
T COG1072 233 LK 234 (283)
T ss_pred Hh
Confidence 43
No 248
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.57 E-value=0.06 Score=55.25 Aligned_cols=142 Identities=20% Similarity=0.290 Sum_probs=64.0
Q ss_pred eEEEEeccCCCChhHHHHHHHhh----CCCceEEEEcchHHHHHhh--c-CCcc-------ccCC--ChHHHHHHH--HH
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKD----HPEKRYILLGTNLILEQMK--V-PGLL-------RKHN--YSERFQCLM--GR 328 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~----~~~k~~vvIStD~Ir~~m~--i-~G~~-------r~~~--y~~~~e~l~--~~ 328 (688)
..+++.|.+|+|||++.+.++.+ .++.+++.++.+++.+.+. + .+.. +... .-+..+.+. +.
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~~~ 114 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGKQR 114 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCchH
Confidence 34789999999999998888643 3455677787665433221 0 0100 0000 000000000 01
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEcCCCCH---HHHHHHHHHHhcCCCEEEEEeCCH--HHHHHHHHHhhccCCCCCcHHHH
Q 005604 329 ANAIFDVLLSRASRTPRNFIIDQTNVFK---SARKRKLRLFVNFRKIAVVVFPKP--EDLKIRSVKRFKEMGKEVPADAV 403 (688)
Q Consensus 329 a~~~l~~lie~aL~~G~nVILDaTNl~r---s~R~~~l~~~a~~~~~~vV~~~~p--eel~~R~~kR~~~~g~~Vpeevi 403 (688)
..+.+-.++.....+|+.+||-+...-. ....++.-.+.. . .++-++.| ++.++=+.++..+.+-.++++++
T Consensus 115 ~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~--G-l~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~ 191 (219)
T PF00308_consen 115 TQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSW--G-LVVELQPPDDEDRRRILQKKAKERGIELPEEVI 191 (219)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHC--S-EEEEE----HHHHHHHHHHHHHHTT--S-HHHH
T ss_pred HHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhh--c-chhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHH
Confidence 1223344555566677777776521110 011222222221 1 23344444 33332233333334667889999
Q ss_pred Hhhhcccc
Q 005604 404 NNMLANYV 411 (688)
Q Consensus 404 ~~m~a~fE 411 (688)
+-+..++.
T Consensus 192 ~~l~~~~~ 199 (219)
T PF00308_consen 192 EYLARRFR 199 (219)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhhc
Confidence 88888764
No 249
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.54 E-value=0.14 Score=50.09 Aligned_cols=112 Identities=14% Similarity=0.144 Sum_probs=60.2
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC-CceEEEEcchH-------HHHHhh-cCCccccCCCh--HHHHHH-HHHHHHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGTNL-------ILEQMK-VPGLLRKHNYS--ERFQCL-MGRANAI 332 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~-~k~~vvIStD~-------Ir~~m~-i~G~~r~~~y~--~~~e~l-~~~a~~~ 332 (688)
..+++.++|.+||||||+.+.++...+ ..+-+.+.-.. +++... ++... ..+. ...+.+ ...-.+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~--~~~~~~tv~~~~~LS~G~~q 102 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEP--SLYENLTVRENLKLSGGMKQ 102 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCC--ccccCCcHHHHhhcCHHHHH
Confidence 478999999999999999999987653 23333342211 111111 11110 0011 111111 1101111
Q ss_pred HHHHHHHHhcCCCeEEEEc--CCCCHHHHHHHHHHHhcCC--CEEEEEeC
Q 005604 333 FDVLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFP 378 (688)
Q Consensus 333 l~~lie~aL~~G~nVILDa--TNl~rs~R~~~l~~~a~~~--~~~vV~~~ 378 (688)
.-.++...+...+.+|+|- +.+....|.++++.+.+.. ...+|++.
T Consensus 103 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~t 152 (173)
T cd03230 103 RLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSS 152 (173)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 1223434456778899994 7888888888888777642 24555553
No 250
>PRK04195 replication factor C large subunit; Provisional
Probab=95.49 E-value=0.041 Score=62.89 Aligned_cols=33 Identities=27% Similarity=0.349 Sum_probs=27.1
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEEc
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIS 299 (688)
...++|.|+||+||||+|+.++++++. .++.++
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~-~~ieln 71 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGW-EVIELN 71 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCC-CEEEEc
Confidence 678999999999999999999998862 244454
No 251
>PRK08116 hypothetical protein; Validated
Probab=95.46 E-value=0.1 Score=55.32 Aligned_cols=42 Identities=17% Similarity=0.167 Sum_probs=30.7
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCC--CceEEEEcchHHHHHh
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQM 307 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~--~k~~vvIStD~Ir~~m 307 (688)
..-++|.|.+|+|||++|..++..+- ...++.++..++...+
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i 157 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRI 157 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 45689999999999999999987642 2345666666655543
No 252
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.45 E-value=0.085 Score=57.74 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=27.5
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC-CceEEEEcc
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGT 300 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~-~k~~vvISt 300 (688)
++.++++|+|++||||||+-+.++.-.. ..+-+.|+-
T Consensus 27 ~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g 64 (338)
T COG3839 27 EDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDG 64 (338)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 3688999999999999999999975322 233455543
No 253
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.45 E-value=0.18 Score=56.53 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=25.4
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEEc
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIS 299 (688)
..-+++.|+||+||||+|+.+++.... .++.++
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~~~~-~~~~l~ 68 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGATDA-PFEALS 68 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCC-CEEEEe
Confidence 335778999999999999999987653 355554
No 254
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=95.45 E-value=0.16 Score=50.42 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=26.0
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHH
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE 305 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~ 305 (688)
||-+.+-.|||++|+|++|++.++ +..++.+.|.+
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg---~~~~d~~ii~~ 35 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLG---YPYYDREIIEE 35 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT-----EE-HHHHHH
T ss_pred CEEECCCCCCChHHHHHHHHHHcC---CccCCHHHHHH
Confidence 578899999999999999999998 66676654443
No 255
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.43 E-value=0.15 Score=54.31 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=23.4
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCC
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPE 292 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~ 292 (688)
+..++++|+||+||||+|+.++.++..
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~ 56 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMGV 56 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 445789999999999999999988763
No 256
>PRK09183 transposase/IS protein; Provisional
Probab=95.41 E-value=0.14 Score=54.01 Aligned_cols=124 Identities=14% Similarity=0.162 Sum_probs=62.8
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC--CceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASR 342 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~--~k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL~ 342 (688)
..+.++++|+||+||||+|..+..... +..+..++...+...+. ... ....+...++..+.
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~-----------~a~------~~~~~~~~~~~~~~ 163 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLS-----------TAQ------RQGRYKTTLQRGVM 163 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHH-----------HHH------HCCcHHHHHHHHhc
Confidence 356788999999999999999854321 12234444443333221 000 00011122223234
Q ss_pred CCCeEEEEcCC---CCHHHHHHHHHHHhc-CCCEEEEEe-CC-HHHHHHHHHHhhccCCCCCcHHHHHhhhccc
Q 005604 343 TPRNFIIDQTN---VFKSARKRKLRLFVN-FRKIAVVVF-PK-PEDLKIRSVKRFKEMGKEVPADAVNNMLANY 410 (688)
Q Consensus 343 ~G~nVILDaTN---l~rs~R~~~l~~~a~-~~~~~vV~~-~~-peel~~R~~kR~~~~g~~Vpeevi~~m~a~f 410 (688)
.-..+|||.-. ...+....+++.+.. +.+..+|+. .. +++|.+.... ...+.+.+++++....
T Consensus 164 ~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s~iiTsn~~~~~w~~~~~~-----d~~~~~ai~dRl~~~~ 232 (259)
T PRK09183 164 APRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTSNLPFGQWDQTFAG-----DAALTSAMLDRLLHHS 232 (259)
T ss_pred CCCEEEEcccccCCCChHHHHHHHHHHHHHHhcCcEEEecCCCHHHHHHHhcC-----chhHHHHHHHHHhcce
Confidence 44578999754 344444445666544 222233333 22 4677665411 1234566777766443
No 257
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=95.40 E-value=0.01 Score=63.43 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=28.2
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEEcchH
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~ 302 (688)
+|+++|++|||||++|..|++.++ ..+||.|.
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~---~~iis~Ds 32 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLN---AEIISVDS 32 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCC---CcEEEech
Confidence 589999999999999999999887 46788886
No 258
>PRK12377 putative replication protein; Provisional
Probab=95.38 E-value=0.11 Score=54.54 Aligned_cols=105 Identities=12% Similarity=0.166 Sum_probs=57.7
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCC--ceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRT 343 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~--k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL~~ 343 (688)
..-+++.|.||+|||++|..++..+.. ..++.++..++.+.++. .+... .....++ ..+..
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~-------~~~~~---------~~~~~~l-~~l~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHE-------SYDNG---------QSGEKFL-QELCK 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHH-------HHhcc---------chHHHHH-HHhcC
Confidence 357899999999999999999876542 23455666655554430 00000 0011122 23466
Q ss_pred CCeEEEEcCC---CCHHHHHHHHHHHhc-CC-CEEEEEeCC--HHHHHHHH
Q 005604 344 PRNFIIDQTN---VFKSARKRKLRLFVN-FR-KIAVVVFPK--PEDLKIRS 387 (688)
Q Consensus 344 G~nVILDaTN---l~rs~R~~~l~~~a~-~~-~~~vV~~~~--peel~~R~ 387 (688)
-..+|||... .+......++..+.. +. ..-+|+... .+++.+++
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~l~~~~ 214 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMSTLL 214 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHh
Confidence 7789999863 344444444555444 22 233344422 36665543
No 259
>PLN02840 tRNA dimethylallyltransferase
Probab=95.36 E-value=0.016 Score=65.06 Aligned_cols=36 Identities=19% Similarity=0.257 Sum_probs=30.0
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchH
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~ 302 (688)
....+|+++|++||||||+|..|++.++ ..+|+.|.
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~La~~~~---~~iis~Ds 54 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALELAKRLN---GEIISADS 54 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHCC---CCeEeccc
Confidence 3466999999999999999999999987 34667674
No 260
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=95.33 E-value=0.11 Score=56.26 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=23.6
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCC
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPE 292 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~ 292 (688)
+..++++|+||+||||+|+.++..+..
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l~~ 77 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEMGV 77 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHhCC
Confidence 456789999999999999999988763
No 261
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.33 E-value=0.016 Score=54.30 Aligned_cols=29 Identities=31% Similarity=0.428 Sum_probs=24.0
Q ss_pred EEEeccCCCChhHHHHHHHhhCCCceEEEE
Q 005604 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILL 298 (688)
Q Consensus 269 IILvGLPGSGKST~Ar~L~~~~~~k~~vvI 298 (688)
|||+|.||+|||++|+.+++.+.. .++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~-~~~~i 30 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR-PVIRI 30 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc-ceEEE
Confidence 789999999999999999988863 34333
No 262
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.32 E-value=0.15 Score=50.74 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=21.6
Q ss_pred cceEEEEeccCCCChhHHHHHHHh
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVK 288 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~ 288 (688)
..+++.++|++||||||+.+.+..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 578999999999999999998864
No 263
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.30 E-value=0.082 Score=52.61 Aligned_cols=110 Identities=14% Similarity=0.026 Sum_probs=61.2
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC-CceEEEEcchHHHHHhhcCCccccCC-C-hHHHHHHHHHHHHHHHHHHHHHh
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGTNLILEQMKVPGLLRKHN-Y-SERFQCLMGRANAIFDVLLSRAS 341 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~-~k~~vvIStD~Ir~~m~i~G~~r~~~-y-~~~~e~l~~~a~~~l~~lie~aL 341 (688)
..+++.++|..||||||+.+.++.... ..+-+.+.... + +...+.. . ..+. + .-.++...+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~----i---~~~~q~~~LSgGq~----q-----rv~laral~ 87 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT----P---VYKPQYIDLSGGEL----Q-----RVAIAAALL 87 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE----E---EEEcccCCCCHHHH----H-----HHHHHHHHh
Confidence 578999999999999999999986543 22334442100 0 0000000 1 1110 1 112333445
Q ss_pred cCCCeEEEEc--CCCCHHHHHHHHHHHhcCC---CEEEEEeCCHHHHHHHHHHh
Q 005604 342 RTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKPEDLKIRSVKR 390 (688)
Q Consensus 342 ~~G~nVILDa--TNl~rs~R~~~l~~~a~~~---~~~vV~~~~peel~~R~~kR 390 (688)
.....+|+|- +++....+..+++.+.+.. ..+++++.-..+..+++..|
T Consensus 88 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~ 141 (177)
T cd03222 88 RNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDR 141 (177)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCE
Confidence 6778999995 6788888887777665531 24565554332333344434
No 264
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.28 E-value=0.17 Score=60.89 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=20.6
Q ss_pred eEEEEeccCCCChhHHHHHHHhhC
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDH 290 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~ 290 (688)
.=++|+|+||+|||++|+.++...
T Consensus 204 ~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 346799999999999999998765
No 265
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.27 E-value=0.2 Score=52.39 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=27.1
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC---CceEEEEcc
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGT 300 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~---~k~~vvISt 300 (688)
...++++.|.||+||||++..++...- ......|+.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 478999999999999999988865431 234556665
No 266
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=95.26 E-value=0.15 Score=52.97 Aligned_cols=32 Identities=19% Similarity=0.400 Sum_probs=21.7
Q ss_pred EEEeccCCCChhHHHHHHHh---hCCCceEEEEcch
Q 005604 269 MMMVGLPASGKTTWAEKWVK---DHPEKRYILLGTN 301 (688)
Q Consensus 269 IILvGLPGSGKST~Ar~L~~---~~~~k~~vvIStD 301 (688)
-+++|+|||||||+...+.+ ..+ ....+|+.|
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~g-r~~~vVNLD 39 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIG-RPVAVVNLD 39 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhC-CceEEEecC
Confidence 46789999999999765543 333 235566665
No 267
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=95.22 E-value=0.053 Score=58.92 Aligned_cols=115 Identities=17% Similarity=0.097 Sum_probs=61.9
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCC--ceEEEEcchHHHHHhhcCCccccCCChH-HHHHHHHHHHHHHHHHHHHHh
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRAS 341 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~--k~~vvIStD~Ir~~m~i~G~~r~~~y~~-~~e~l~~~a~~~l~~lie~aL 341 (688)
...-|+++||+|+||||+.-+|.+.+.. ..+..+.-|.||.-+. ..-.|.. ..++-+.++. ...+...
T Consensus 49 rgctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~-----knlgfs~edreenirria----evaklfa 119 (627)
T KOG4238|consen 49 RGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLN-----KNLGFSPEDREENIRRIA----EVAKLFA 119 (627)
T ss_pred cceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhh-----hccCCCchhHHHHHHHHH----HHHHHHh
Confidence 3567899999999999998888665431 2256677788875432 1112222 1222222221 1222334
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHhc-CC-CEEEEEeCCH-HHHHHHHHH
Q 005604 342 RTPRNFIIDQTNVFKSARKRKLRLFVN-FR-KIAVVVFPKP-EDLKIRSVK 389 (688)
Q Consensus 342 ~~G~nVILDaTNl~rs~R~~~l~~~a~-~~-~~~vV~~~~p-eel~~R~~k 389 (688)
++|-..|-.......+.|.. .+.+-+ .. .+.-|+++++ +.|.+|..+
T Consensus 120 daglvcitsfispf~~dr~~-arkihe~~~l~f~ev~v~a~l~vceqrd~k 169 (627)
T KOG4238|consen 120 DAGLVCITSFISPFAKDREN-ARKIHESAGLPFFEVFVDAPLNVCEQRDVK 169 (627)
T ss_pred cCCceeeehhcChhhhhhhh-hhhhhcccCCceEEEEecCchhhhhhcChH
Confidence 56654443333333334432 222222 22 5677788887 888887654
No 268
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.20 E-value=0.014 Score=64.32 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=24.4
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
..++++|+|+|||||||+|+.|++.+.
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 368999999999999999999998775
No 269
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.17 E-value=0.23 Score=49.45 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=22.6
Q ss_pred cceEEEEeccCCCChhHHHHHHHhh
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKD 289 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~ 289 (688)
..+++.++|.+||||||+.+.++..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999999864
No 270
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.17 E-value=0.1 Score=48.84 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=25.0
Q ss_pred EEEEeccCCCChhHHHHHHHhhCC--CceEEEEcch
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~--~k~~vvIStD 301 (688)
+++++|.||+||||++..++.... ....+.++.+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 478999999999999999976653 2335555544
No 271
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.13 E-value=0.17 Score=54.07 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=23.8
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
-+.+++++|.||+||||+|+.+++...
T Consensus 42 ~~~~lll~G~~G~GKT~la~~l~~~~~ 68 (316)
T PHA02544 42 IPNMLLHSPSPGTGKTTVAKALCNEVG 68 (316)
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 467888999999999999999988764
No 272
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.13 E-value=0.11 Score=58.61 Aligned_cols=40 Identities=30% Similarity=0.227 Sum_probs=30.4
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC---CceEEEEcchHHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTNLIL 304 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~---~k~~vvIStD~Ir 304 (688)
.+.+++++|++||||||++.+|+.... ++...+++.|..|
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R 264 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYR 264 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchh
Confidence 467999999999999999999986431 2346677778633
No 273
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.11 E-value=0.087 Score=57.59 Aligned_cols=137 Identities=17% Similarity=0.181 Sum_probs=72.1
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCC-ceEEEEcchHHHHHhhcCCccccCC-ChHHHHHHHHHHHHHHHHHHHHHhc
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLILEQMKVPGLLRKHN-YSERFQCLMGRANAIFDVLLSRASR 342 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~-k~~vvIStD~Ir~~m~i~G~~r~~~-y~~~~e~l~~~a~~~l~~lie~aL~ 342 (688)
....|+++|.+||||||+.+.|+...+. .+.+.|- |. .++.+........ ...... .....-.+.++++.+|+
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiE-d~--~El~l~~~~n~~~~~~~~~~--~~~~~~~~~~ll~~~LR 233 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVE-DA--REIVLSNHPNRVHLLASKGG--QGRAKVTTQDLIEACLR 233 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEec-CC--CccccccCCCEEEEEecCCC--CCcCcCcHHHHHHHHhc
Confidence 3568999999999999999999988874 3344442 21 1121111000000 000000 00001123456777787
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhcCC--CEEEEEeCCHHHHHHHHHHhhccCCCCCcHHHHHhhh
Q 005604 343 TPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKPEDLKIRSVKRFKEMGKEVPADAVNNML 407 (688)
Q Consensus 343 ~G~nVILDaTNl~rs~R~~~l~~~a~~~--~~~vV~~~~peel~~R~~kR~~~~g~~Vpeevi~~m~ 407 (688)
..-++||=.---..+.. .+++.+..-+ -++-++..++.+.+.|+.......+..++.+.+.++.
T Consensus 234 ~~PD~IivGEiR~~ea~-~~l~a~~tGh~G~~tTiHa~s~~~ai~Rl~~~~~~~~~~~~~~~~~~~i 299 (332)
T PRK13900 234 LRPDRIIVGELRGAEAF-SFLRAINTGHPGSISTLHADSPAMAIEQLKLMVMQAGLGMPPDQIKKYI 299 (332)
T ss_pred cCCCeEEEEecCCHHHH-HHHHHHHcCCCcEEEEEecCCHHHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 76665544322233332 2344433223 2455677777788888886654445556776665544
No 274
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.10 E-value=0.11 Score=57.40 Aligned_cols=28 Identities=25% Similarity=0.235 Sum_probs=24.4
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
+-+..++++|+||+||||+|+.+++.+.
T Consensus 36 ~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 36 RIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred CCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 3467899999999999999999998764
No 275
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.09 E-value=0.28 Score=49.28 Aligned_cols=27 Identities=22% Similarity=0.163 Sum_probs=23.8
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
..+++.++|.+||||||+.+.++..++
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999999987643
No 276
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.08 E-value=0.34 Score=46.18 Aligned_cols=102 Identities=14% Similarity=0.154 Sum_probs=59.3
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCC-ceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRT 343 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~-k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL~~ 343 (688)
..+++.++|.+||||||+.+.++..++. .+-+.+... ..+ +...+ ...-.. ++ -.++...+.+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~---~~i---~~~~~--lS~G~~---~r-----v~laral~~~ 88 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST---VKI---GYFEQ--LSGGEK---MR-----LALAKLLLEN 88 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe---EEE---EEEcc--CCHHHH---HH-----HHHHHHHhcC
Confidence 4789999999999999999999876542 223333210 000 10000 111100 11 1133344567
Q ss_pred CCeEEEEc--CCCCHHHHHHHHHHHhcCCCEEEEEe-CCHHHH
Q 005604 344 PRNFIIDQ--TNVFKSARKRKLRLFVNFRKIAVVVF-PKPEDL 383 (688)
Q Consensus 344 G~nVILDa--TNl~rs~R~~~l~~~a~~~~~~vV~~-~~peel 383 (688)
...+|+|. .++....+..+++.+++.. ..++++ +..+++
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~~-~til~~th~~~~~ 130 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEYP-GTVILVSHDRYFL 130 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHcC-CEEEEEECCHHHH
Confidence 78899995 7788888888888777653 355544 334443
No 277
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=95.04 E-value=0.079 Score=57.68 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=23.4
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
.+.|+++|.||+||||+++.|++.++
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~ 187 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFN 187 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 45899999999999999999998765
No 278
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.03 E-value=0.18 Score=55.99 Aligned_cols=40 Identities=25% Similarity=0.263 Sum_probs=30.7
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhC----CCceEEEEcchHH
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNLI 303 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~----~~k~~vvIStD~I 303 (688)
.+..+++|+|++|+||||++.+|+..+ +.+...+|..|..
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~ 178 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSY 178 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 346799999999999999999998642 2234567777764
No 279
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.03 E-value=0.27 Score=48.21 Aligned_cols=118 Identities=14% Similarity=0.106 Sum_probs=62.7
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCC-ceEEEEcchHH-------HHHhhcCCccccCCCh-HHHHHHHHH---HHHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLI-------LEQMKVPGLLRKHNYS-ERFQCLMGR---ANAI 332 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~-k~~vvIStD~I-------r~~m~i~G~~r~~~y~-~~~e~l~~~---a~~~ 332 (688)
..+++.++|.+||||||+.+.++...+. .+-+.+.-..+ ++.+..... ....+. ..++.+... -.+.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q-~~~~~~~tv~~~i~~~LS~G~~q 105 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQ-RPYLFDTTLRNNLGRRFSGGERQ 105 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEcc-CCeeecccHHHhhcccCCHHHHH
Confidence 4789999999999999999999876542 33444432111 111111000 000010 011110000 0111
Q ss_pred HHHHHHHHhcCCCeEEEEc--CCCCHHHHHHHHHHHhcCC-CEEEEEe-CCHHHH
Q 005604 333 FDVLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR-KIAVVVF-PKPEDL 383 (688)
Q Consensus 333 l~~lie~aL~~G~nVILDa--TNl~rs~R~~~l~~~a~~~-~~~vV~~-~~peel 383 (688)
.-.++...+...+.+|+|. ..+....++.+++.+.+.. ..++|++ +..+++
T Consensus 106 rv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 160 (178)
T cd03247 106 RLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGI 160 (178)
T ss_pred HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 1224444567788999995 6788888888777776542 3455544 444443
No 280
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.02 E-value=0.2 Score=49.27 Aligned_cols=118 Identities=14% Similarity=0.163 Sum_probs=61.8
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCC-ceEEEEcchH----------HHHHhhcCCccccCCC-h-HHHHHH---HHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNL----------ILEQMKVPGLLRKHNY-S-ERFQCL---MGR 328 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~-k~~vvIStD~----------Ir~~m~i~G~~r~~~y-~-~~~e~l---~~~ 328 (688)
..+++.++|.+||||||+.+.++..++. .+-+.+.... +++....... ....+ . .-.+.+ ...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q-~~~~~~~~t~~~~l~~~lS~ 103 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQ-DFALFPHLTVLENIALGLSG 103 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEec-CCccCCCCCHHHheeecCCH
Confidence 4789999999999999999999866542 2333332211 1111110000 00001 0 111111 000
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEc--CCCCHHHHHHHHHHHhcCC---CEEEEEe-CCHHHH
Q 005604 329 ANAIFDVLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVF-PKPEDL 383 (688)
Q Consensus 329 a~~~l~~lie~aL~~G~nVILDa--TNl~rs~R~~~l~~~a~~~---~~~vV~~-~~peel 383 (688)
-.+..-.++...+...+.+|+|- +++....+.++++.+.+.. ..+++++ +..+++
T Consensus 104 G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~ 164 (178)
T cd03229 104 GQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEA 164 (178)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 01111224444567788999995 7888888888777766532 2455544 444443
No 281
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.02 E-value=0.24 Score=48.10 Aligned_cols=109 Identities=16% Similarity=0.225 Sum_probs=60.5
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC-CceEEEEcchHH-----HHHhh-cCCccccCCChHHHHHHHHHHHHHHHHHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGTNLI-----LEQMK-VPGLLRKHNYSERFQCLMGRANAIFDVLL 337 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~-~k~~vvIStD~I-----r~~m~-i~G~~r~~~y~~~~e~l~~~a~~~l~~li 337 (688)
..+++.++|.+||||||+.+.++...+ ..+-+.+....+ .+..+ ..+... ....- .+..-.++
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~--qLS~G--------~~qrl~la 94 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVY--QLSVG--------ERQMVEIA 94 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEE--ecCHH--------HHHHHHHH
Confidence 478999999999999999999987654 223344422111 01000 001000 01110 00111233
Q ss_pred HHHhcCCCeEEEEc--CCCCHHHHHHHHHHHhcCC--CEEEEEe-CCHHHH
Q 005604 338 SRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVF-PKPEDL 383 (688)
Q Consensus 338 e~aL~~G~nVILDa--TNl~rs~R~~~l~~~a~~~--~~~vV~~-~~peel 383 (688)
...+.....+|+|- ..+....|+++++.+++.. ...+|++ +..+++
T Consensus 95 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 34456778899995 6788888888888776542 3455555 334433
No 282
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.00 E-value=0.073 Score=56.40 Aligned_cols=39 Identities=21% Similarity=0.391 Sum_probs=30.4
Q ss_pred CCcceEEEEeccCCCChhHHHHHHHhhCCCc--eEEEEcch
Q 005604 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTN 301 (688)
Q Consensus 263 ~~~~~LIILvGLPGSGKST~Ar~L~~~~~~k--~~vvIStD 301 (688)
.+.+.+||++|..|||||||.++|...+..+ .-.+|+.|
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLD 56 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLD 56 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCC
Confidence 4568899999999999999999997654322 24677777
No 283
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.98 E-value=0.18 Score=57.95 Aligned_cols=27 Identities=30% Similarity=0.228 Sum_probs=23.4
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhC
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDH 290 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~ 290 (688)
+-+.-++++|++|+||||+|+.+++.+
T Consensus 33 ri~ha~Lf~Gp~G~GKTT~ArilAk~L 59 (491)
T PRK14964 33 KIPQSILLVGASGVGKTTCARIISLCL 59 (491)
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHH
Confidence 346789999999999999999998754
No 284
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.086 Score=57.07 Aligned_cols=26 Identities=19% Similarity=0.446 Sum_probs=23.9
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
.+||++.|+||.|||++.+.|++.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLS 202 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLS 202 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhhe
Confidence 57999999999999999999998875
No 285
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.95 E-value=0.17 Score=50.87 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=21.5
Q ss_pred EEEEeccCCCChhHHHHHHHhhCC
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
+|+++|++||||||+++.++....
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 789999999999999998887664
No 286
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.95 E-value=0.19 Score=59.43 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=25.2
Q ss_pred CCcceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 263 ~~~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
.+-+..+||+|.+|.||||+|+.|++.+.
T Consensus 35 gRLpHA~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 35 QRLHHAYLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34467899999999999999999998875
No 287
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.94 E-value=0.27 Score=56.62 Aligned_cols=35 Identities=20% Similarity=0.115 Sum_probs=27.5
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC-CceEEEEc
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG 299 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~-~k~~vvIS 299 (688)
..+.+.++|.+||||||+++.+..-+. .++-+.|+
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~ 395 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLD 395 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 578999999999999999999987654 23445554
No 288
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.92 E-value=0.17 Score=58.33 Aligned_cols=28 Identities=21% Similarity=0.109 Sum_probs=24.2
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
+-+.+++++|+||+||||+|+.+++.+.
T Consensus 34 ~l~ha~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 34 RLGHAYLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3467899999999999999999988764
No 289
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.91 E-value=0.16 Score=58.67 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=24.6
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
+-+..++++|+||+||||+|+.+++.+.
T Consensus 41 ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 41 RLAGGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 4467899999999999999999998775
No 290
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.91 E-value=0.14 Score=50.35 Aligned_cols=109 Identities=17% Similarity=0.200 Sum_probs=57.3
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC-CceEEEEcch--------HHHHHhh-------cCCcccc-CCChHHHHHHHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGTN--------LILEQMK-------VPGLLRK-HNYSERFQCLMG 327 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~-~k~~vvIStD--------~Ir~~m~-------i~G~~r~-~~y~~~~e~l~~ 327 (688)
..+++.++|.+||||||+.+.+..... ..+-+.+.-. .++..+. ..|.... .... ..+..
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~---~~LS~ 100 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPF---NELSG 100 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCc---ccCCH
Confidence 478999999999999999999987653 2333444221 1111110 0111000 0000 00000
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEc--CCCCHHHHHHHHHHHhcCC---CEEEEEe
Q 005604 328 RANAIFDVLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVF 377 (688)
Q Consensus 328 ~a~~~l~~lie~aL~~G~nVILDa--TNl~rs~R~~~l~~~a~~~---~~~vV~~ 377 (688)
-.+..-.++...+.....+|+|- .++....+..+++.+.+.. ...++++
T Consensus 101 -G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~ 154 (180)
T cd03214 101 -GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMV 154 (180)
T ss_pred -HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 00111123444466778899994 6788888887777666532 2355544
No 291
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.11 Score=60.78 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=28.6
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcc
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvISt 300 (688)
..++=|++-|+||+||||+|+.++.+.. ..++.|.-
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~-~nFlsvkg 501 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAG-MNFLSVKG 501 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhc-CCeeeccC
Confidence 4578899999999999999999998765 33555543
No 292
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.88 E-value=0.079 Score=52.70 Aligned_cols=121 Identities=14% Similarity=0.251 Sum_probs=54.4
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC--CceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASR 342 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~--~k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL~ 342 (688)
..+-++|.|.+|+|||++|..++.+.- ...+..++.+++.++++. .. . ....+. +++ .+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~-~~----~-~~~~~~-----------~~~-~l~ 107 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQ-SR----S-DGSYEE-----------LLK-RLK 107 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHC-CH----C-CTTHCH-----------HHH-HHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccc-cc----c-ccchhh-----------hcC-ccc
Confidence 356799999999999999988875422 233566777777777652 10 0 011111 121 223
Q ss_pred CCCeEEEEcCCCC---HHHHHHHHHHHhc-CCCEEEEEe-CC-HHHHHHHHHHhhccCCCCCcHHHHHhhhcc
Q 005604 343 TPRNFIIDQTNVF---KSARKRKLRLFVN-FRKIAVVVF-PK-PEDLKIRSVKRFKEMGKEVPADAVNNMLAN 409 (688)
Q Consensus 343 ~G~nVILDaTNl~---rs~R~~~l~~~a~-~~~~~vV~~-~~-peel~~R~~kR~~~~g~~Vpeevi~~m~a~ 409 (688)
.=..+|||.-... ...+..+++.+.. +.+..+|+. .- +++|.+.+..+ .+.+.+++++...
T Consensus 108 ~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~~~~~l~~~~~d~------~~a~aildRl~~~ 174 (178)
T PF01695_consen 108 RVDLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNLSPSELEEVLGDR------ALAEAILDRLLHH 174 (178)
T ss_dssp TSSCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS-HHHHHT------------------------
T ss_pred cccEecccccceeeecccccccchhhhhHhhcccCeEeeCCCchhhHhhccccc------ccccccccccccc
Confidence 4578899974443 3333334444433 222233333 32 47877766544 3556666665543
No 293
>PLN02748 tRNA dimethylallyltransferase
Probab=94.86 E-value=0.027 Score=64.12 Aligned_cols=36 Identities=19% Similarity=0.372 Sum_probs=31.7
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchH
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~ 302 (688)
....+|+++|++||||||+|..|++.++ ..+||.|.
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~---~eii~~Ds 55 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFP---VEIINADS 55 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcC---eeEEcCch
Confidence 3467999999999999999999999887 67899985
No 294
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.83 E-value=0.25 Score=58.36 Aligned_cols=36 Identities=22% Similarity=0.318 Sum_probs=28.4
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcc
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvISt 300 (688)
.+.++.+|||+||-||||+|.-+++..+- .++-|++
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaGY-sVvEINA 359 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAGY-SVVEINA 359 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcCc-eEEEecc
Confidence 45789999999999999999999987762 2344544
No 295
>PRK08181 transposase; Validated
Probab=94.80 E-value=0.14 Score=54.45 Aligned_cols=120 Identities=11% Similarity=0.145 Sum_probs=63.6
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCC--CceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRT 343 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~--~k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL~~ 343 (688)
..-++++|+||+|||++|..++...- +..++.++..++.+++.. . + ....+.++++ .+..
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~-a----------~------~~~~~~~~l~-~l~~ 167 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQV-A----------R------RELQLESAIA-KLDK 167 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHH-H----------H------hCCcHHHHHH-HHhc
Confidence 34589999999999999999875432 223455666655554421 0 0 0001111222 2345
Q ss_pred CCeEEEEcCC---CCHHHHHHHHHHHhc-CCCEEEEEe-CC-HHHHHHHHHHhhccCCCCCcHHHHHhhhcc
Q 005604 344 PRNFIIDQTN---VFKSARKRKLRLFVN-FRKIAVVVF-PK-PEDLKIRSVKRFKEMGKEVPADAVNNMLAN 409 (688)
Q Consensus 344 G~nVILDaTN---l~rs~R~~~l~~~a~-~~~~~vV~~-~~-peel~~R~~kR~~~~g~~Vpeevi~~m~a~ 409 (688)
-..+|||.-. .+......+++.+.. +.+..+|+. .. +.+|-.... ...+.+.+++++...
T Consensus 168 ~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~~w~~~~~------D~~~a~aildRL~h~ 233 (269)
T PRK08181 168 FDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFGEWNRVFP------DPAMTLAAVDRLVHH 233 (269)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHhcC------CccchhhHHHhhhcC
Confidence 5688999743 334444555666654 222233333 33 366655432 123456677776654
No 296
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.75 E-value=0.027 Score=53.73 Aligned_cols=27 Identities=22% Similarity=0.227 Sum_probs=24.9
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
...+|+|+|..|+||||+++.+++.++
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 467999999999999999999999876
No 297
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=94.74 E-value=0.074 Score=59.24 Aligned_cols=38 Identities=18% Similarity=0.284 Sum_probs=29.0
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~I 303 (688)
.+.-|+|+|+||+|||++|+.++.++.. .++.++...+
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~-~~i~v~~~~l 201 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNA-TFIRVVGSEL 201 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCC-CEEEeehHHH
Confidence 3567899999999999999999988763 3555544433
No 298
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.74 E-value=0.29 Score=56.93 Aligned_cols=28 Identities=25% Similarity=0.206 Sum_probs=24.0
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
+-+..+|++|++|+||||+|+.+++.+.
T Consensus 36 rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 36 KVHHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456789999999999999999998764
No 299
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.74 E-value=0.13 Score=53.46 Aligned_cols=153 Identities=15% Similarity=0.331 Sum_probs=73.3
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHH--Hh--cC
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSR--AS--RT 343 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~--aL--~~ 343 (688)
=+|+.|+||.||||-+..|++++-+..+ .+.+.+ ++.. .+... +-+ +..++.+.+. -+ .+
T Consensus 50 ~liisGpPG~GKTTsi~~LAr~LLG~~~----ke~vLE---LNAS-deRGI----DvV----Rn~IK~FAQ~kv~lp~gr 113 (333)
T KOG0991|consen 50 NLIISGPPGTGKTTSILCLARELLGDSY----KEAVLE---LNAS-DERGI----DVV----RNKIKMFAQKKVTLPPGR 113 (333)
T ss_pred ceEeeCCCCCchhhHHHHHHHHHhChhh----hhHhhh---ccCc-ccccc----HHH----HHHHHHHHHhhccCCCCc
Confidence 4678999999999998888876532000 011111 1110 00111 111 1112222222 13 24
Q ss_pred CCeEEEEc-CCCCHHHHH---HHHHHHhcCCCEEEEEeCCH----HHHHHHHH-HhhccCCCCCcH-HHHHhhhc--ccc
Q 005604 344 PRNFIIDQ-TNVFKSARK---RKLRLFVNFRKIAVVVFPKP----EDLKIRSV-KRFKEMGKEVPA-DAVNNMLA--NYV 411 (688)
Q Consensus 344 G~nVILDa-TNl~rs~R~---~~l~~~a~~~~~~vV~~~~p----eel~~R~~-kR~~~~g~~Vpe-evi~~m~a--~fE 411 (688)
-+.||||- -..+...+. +-++...+..+|++. |... |-++.|.+ -| -..+++ .++.+++. +.|
T Consensus 114 hKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFala-CN~s~KIiEPIQSRCAiLR----ysklsd~qiL~Rl~~v~k~E 188 (333)
T KOG0991|consen 114 HKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALA-CNQSEKIIEPIQSRCAILR----YSKLSDQQILKRLLEVAKAE 188 (333)
T ss_pred eeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhh-hcchhhhhhhHHhhhHhhh----hcccCHHHHHHHHHHHHHHh
Confidence 45799994 222222222 224443333366664 4332 55566655 33 223444 55556553 334
Q ss_pred -cCCCCCCCCCCCCCcEEEEeccCHHHHHHHHHHHHhcC
Q 005604 412 -LPVNKDTPGSDELFDQVMFVELDREEAQRHLDEMKGTL 449 (688)
Q Consensus 412 -~P~~~~~p~~~EgfdeI~~~el~~~ea~~li~~~~~~~ 449 (688)
++- .+++.+.|+++ ...+.+..+..+....
T Consensus 189 kv~y------t~dgLeaiift--a~GDMRQalNnLQst~ 219 (333)
T KOG0991|consen 189 KVNY------TDDGLEAIIFT--AQGDMRQALNNLQSTV 219 (333)
T ss_pred CCCC------CcchHHHhhhh--ccchHHHHHHHHHHHh
Confidence 333 37888888876 3455666665544433
No 300
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.73 E-value=0.086 Score=60.14 Aligned_cols=118 Identities=19% Similarity=0.254 Sum_probs=69.1
Q ss_pred cccCCccC---CCCcceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHH
Q 005604 254 SVLGPTFC---NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRAN 330 (688)
Q Consensus 254 ~v~~P~~~---~~~~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~ 330 (688)
+|..|..- ..+..+=|+|-|+||+|||-+||++-+-+..+.-.+++--+|+.+. +.+..
T Consensus 241 RvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KY------------------VGeSE 302 (744)
T KOG0741|consen 241 RVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKY------------------VGESE 302 (744)
T ss_pred hcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHh------------------hcccH
Confidence 45555432 2356788999999999999999999877765444555554554432 22222
Q ss_pred HHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHHHHHhhccCCCCCcHHHHHhhhcc
Q 005604 331 AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLAN 409 (688)
Q Consensus 331 ~~l~~lie~aL~~G~nVILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~p-eel~~R~~kR~~~~g~~Vpeevi~~m~a~ 409 (688)
+.+++|...| -.++|+ +......+||.|+.. ..|++|=..+ ++..|-+.|+..+..+
T Consensus 303 ~NvR~LFaDA--------------EeE~r~-----~g~~SgLHIIIFDEiDAICKqRGS~~---g~TGVhD~VVNQLLsK 360 (744)
T KOG0741|consen 303 ENVRKLFADA--------------EEEQRR-----LGANSGLHIIIFDEIDAICKQRGSMA---GSTGVHDTVVNQLLSK 360 (744)
T ss_pred HHHHHHHHhH--------------HHHHHh-----hCccCCceEEEehhhHHHHHhcCCCC---CCCCccHHHHHHHHHh
Confidence 3333343221 112222 122225677777765 5777764433 3466777777777766
Q ss_pred cc
Q 005604 410 YV 411 (688)
Q Consensus 410 fE 411 (688)
+.
T Consensus 361 mD 362 (744)
T KOG0741|consen 361 MD 362 (744)
T ss_pred cc
Confidence 54
No 301
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.71 E-value=0.15 Score=52.29 Aligned_cols=37 Identities=16% Similarity=0.352 Sum_probs=27.2
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC---CceEEEEcch
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTN 301 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~---~k~~vvIStD 301 (688)
..++++++|.||+|||||+..++.... ......++.+
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 578999999999999999988764321 2345666653
No 302
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.70 E-value=0.21 Score=60.73 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=25.0
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
+-+..+|++|+||+||||+|+.+++.+.
T Consensus 36 rl~HAyLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 36 RLHHAYLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcc
Confidence 4477899999999999999999998876
No 303
>PF05729 NACHT: NACHT domain
Probab=94.69 E-value=0.021 Score=54.00 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=21.6
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCC
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
++++++|.||+||||+++.++..+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHH
Confidence 4799999999999999999886543
No 304
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.63 E-value=0.15 Score=59.53 Aligned_cols=109 Identities=15% Similarity=0.162 Sum_probs=61.6
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcc--------hHHHHHhhc--------CCccccC------CChHHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT--------NLILEQMKV--------PGLLRKH------NYSERF 322 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvISt--------D~Ir~~m~i--------~G~~r~~------~y~~~~ 322 (688)
..+.+.++|.+||||||+++.|...++.++-+.|+- +.+|+.... .|..+++ .+.+
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~-- 452 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASD-- 452 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCH--
Confidence 578899999999999999999988776555555543 233333221 1111111 1111
Q ss_pred HHHHHHHHH-HHHHHHHHHhcCCCeEEEE--cCCCCHHHHHHHHHHHhcC-CCEEEEEe
Q 005604 323 QCLMGRANA-IFDVLLSRASRTPRNFIID--QTNVFKSARKRKLRLFVNF-RKIAVVVF 377 (688)
Q Consensus 323 e~l~~~a~~-~l~~lie~aL~~G~nVILD--aTNl~rs~R~~~l~~~a~~-~~~~vV~~ 377 (688)
+++.+.+.. ++.+.+ ..+..|.+-+|. ..+++..+|+| +..++.. .+..++.+
T Consensus 453 eei~~al~~a~l~~~i-~~lp~G~dT~vge~G~~LSGGQrQR-ialARAll~~~~IliL 509 (588)
T PRK11174 453 EQLQQALENAWVSEFL-PLLPQGLDTPIGDQAAGLSVGQAQR-LALARALLQPCQLLLL 509 (588)
T ss_pred HHHHHHHHHhCHHHHH-HhcccccccccccCCCCCCHHHHHH-HHHHHHHhcCCCEEEE
Confidence 233332222 344455 335667776554 47899988887 6665542 23334444
No 305
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.55 E-value=0.27 Score=48.45 Aligned_cols=113 Identities=23% Similarity=0.218 Sum_probs=59.1
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC-CceEEEEcchH---------HHHHhhc-CCccc-cCCC--hHHHHHHHH---
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGTNL---------ILEQMKV-PGLLR-KHNY--SERFQCLMG--- 327 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~-~k~~vvIStD~---------Ir~~m~i-~G~~r-~~~y--~~~~e~l~~--- 327 (688)
..+++.++|.+||||||+.+.++...+ ..+-+.+.-.. .++.+.. +.... ...+ ....+.+.-
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~ 104 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL 104 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh
Confidence 478899999999999999999987654 22333342211 1111110 11000 0001 011111110
Q ss_pred --HHHHHHHHHHHHHhcCCCeEEEEc--CCCCHHHHHHHHHHHhcCC--CEEEEEe
Q 005604 328 --RANAIFDVLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVF 377 (688)
Q Consensus 328 --~a~~~l~~lie~aL~~G~nVILDa--TNl~rs~R~~~l~~~a~~~--~~~vV~~ 377 (688)
.-.+..-.++...+.....+|+|- .++....|+.+++.+.+.. ...++++
T Consensus 105 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~ 160 (182)
T cd03215 105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLI 160 (182)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 001111123334456778899994 7888888888777776532 3455544
No 306
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=94.54 E-value=0.22 Score=56.68 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=24.0
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
+-+..++++|+||+||||+|+.+++.+.
T Consensus 37 ~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~ 64 (451)
T PRK06305 37 RAAHAYLFSGIRGTGKTTLARIFAKALN 64 (451)
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3467899999999999999999988653
No 307
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=0.2 Score=54.92 Aligned_cols=95 Identities=19% Similarity=0.308 Sum_probs=57.7
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHHh-c
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS-R 342 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL-~ 342 (688)
..|+=|+|-|+||+|||-+|++++..... .++.+..-++.+++ .|. -.+..+.+.+.|- +
T Consensus 183 ~PPKGVLLYGPPGTGKTLLAkAVA~~T~A-tFIrvvgSElVqKY--iGE----------------GaRlVRelF~lArek 243 (406)
T COG1222 183 DPPKGVLLYGPPGTGKTLLAKAVANQTDA-TFIRVVGSELVQKY--IGE----------------GARLVRELFELAREK 243 (406)
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCc-eEEEeccHHHHHHH--hcc----------------chHHHHHHHHHHhhc
Confidence 45788999999999999999999987663 35544333333332 121 1112233443332 2
Q ss_pred CCCeEEEE------------cCCCCHHHHHHHHHHHhc---CC---CEEEEEe
Q 005604 343 TPRNFIID------------QTNVFKSARKRKLRLFVN---FR---KIAVVVF 377 (688)
Q Consensus 343 ~G~nVILD------------aTNl~rs~R~~~l~~~a~---~~---~~~vV~~ 377 (688)
+.-.+.+| .|.-.++-++-+++++.+ |. .+.||.-
T Consensus 244 aPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~A 296 (406)
T COG1222 244 APSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMA 296 (406)
T ss_pred CCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEe
Confidence 33345555 466778888888888875 32 5666644
No 308
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.51 E-value=0.28 Score=58.33 Aligned_cols=29 Identities=24% Similarity=0.205 Sum_probs=25.2
Q ss_pred CCcceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 263 ~~~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
.+-+..+||+|.+|+||||+|+.+++.+.
T Consensus 35 ~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 35 GRLHHAYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 34477899999999999999999998765
No 309
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.51 E-value=0.13 Score=54.36 Aligned_cols=113 Identities=15% Similarity=0.156 Sum_probs=57.5
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCC--ceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRT 343 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~--k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL~~ 343 (688)
.-+|+++|.+||||||+.+.++..... ...+.|. |. . ++.+.+.. ....... ....+..+++.+|+.
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiE-dp-~-E~~~~~~~-q~~v~~~-------~~~~~~~~l~~~lR~ 148 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVE-DP-V-EYQIPGIN-QVQVNEK-------AGLTFARGLRAILRQ 148 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEEC-CC-c-eecCCCce-EEEeCCc-------CCcCHHHHHHHHhcc
Confidence 458999999999999999999876642 2334442 21 1 11122221 0000000 001233456667777
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhcCC-CEEEEEeCCHHHHHHHHHH
Q 005604 344 PRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKPEDLKIRSVK 389 (688)
Q Consensus 344 G~nVILDaTNl~rs~R~~~l~~~a~~~-~~~vV~~~~peel~~R~~k 389 (688)
+-++|+=.=--..+.-...++.+..-+ -++-++-.+......|+..
T Consensus 149 ~PD~i~vgEiR~~e~a~~~~~aa~tGh~v~tTlHa~~~~~ai~Rl~~ 195 (264)
T cd01129 149 DPDIIMVGEIRDAETAEIAVQAALTGHLVLSTLHTNDAPGAITRLLD 195 (264)
T ss_pred CCCEEEeccCCCHHHHHHHHHHHHcCCcEEEEeccCCHHHHHHHHHH
Confidence 766555442233333232333332222 2233344556788888865
No 310
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=94.50 E-value=0.39 Score=50.29 Aligned_cols=27 Identities=30% Similarity=0.283 Sum_probs=22.7
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
.+--++++|.+||||||+...|+..+.
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~~ 38 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYLR 38 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 344678999999999999999987765
No 311
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.50 E-value=0.031 Score=55.55 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=24.5
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCC
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE 292 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~ 292 (688)
.+.++.++|.+||||||+++++...+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4669999999999999999999977653
No 312
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.48 E-value=0.36 Score=50.78 Aligned_cols=37 Identities=14% Similarity=0.330 Sum_probs=27.5
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhC--CCceEEEEcch
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN 301 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~--~~k~~vvIStD 301 (688)
...+++++|.||+||||+|.+++... .....+.|+.+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 57899999999999999999886532 12345566654
No 313
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=94.48 E-value=0.12 Score=57.93 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=27.0
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCceEEEEc
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIS 299 (688)
.++-++|.|+||+|||++|+.++..... .++.+.
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~-~fi~i~ 211 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTA-TFIRVV 211 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCC-CEEEEe
Confidence 4677999999999999999999988763 244443
No 314
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.44 E-value=0.22 Score=58.69 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=25.1
Q ss_pred CCcceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 263 ~~~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
.+-+..+||+|++|+||||+|+.+++.+.
T Consensus 43 gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~ 71 (598)
T PRK09111 43 GRIAQAFMLTGVRGVGKTTTARILARALN 71 (598)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHhhC
Confidence 34467899999999999999999998765
No 315
>COG3911 Predicted ATPase [General function prediction only]
Probab=94.42 E-value=0.12 Score=50.38 Aligned_cols=43 Identities=19% Similarity=0.218 Sum_probs=31.8
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhh
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK 308 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~ 308 (688)
..+++||+|.||+||||+...|.+.-- .-+..+..|.|+++-.
T Consensus 8 R~~~fIltGgpGaGKTtLL~aLa~~Gf-atvee~~r~ii~~es~ 50 (183)
T COG3911 8 RHKRFILTGGPGAGKTTLLAALARAGF-ATVEEAGRDIIALESA 50 (183)
T ss_pred cceEEEEeCCCCCcHHHHHHHHHHcCc-eeeccchhhHHHHHHh
Confidence 357999999999999999999986532 1234456677776643
No 316
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.41 E-value=0.15 Score=61.34 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=29.3
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~ 302 (688)
.++-|+|+|+||+||||+|+.++..... .++.|+...
T Consensus 211 ~~~giLL~GppGtGKT~laraia~~~~~-~~i~i~~~~ 247 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKAVANEAGA-YFISINGPE 247 (733)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHhCC-eEEEEecHH
Confidence 4677999999999999999999988763 355665443
No 317
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.40 E-value=0.35 Score=52.39 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=23.9
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
+-+..++++|+||+||||+|+.+++.+.
T Consensus 34 ~~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 34 RIAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3467899999999999999999987753
No 318
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.39 E-value=0.23 Score=51.38 Aligned_cols=37 Identities=16% Similarity=0.390 Sum_probs=27.6
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhC--CCceEEEEcch
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN 301 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~--~~k~~vvIStD 301 (688)
...++++.|.|||||||+|.+++.+. .+...+.|+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 47899999999999999998876432 22345666654
No 319
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.38 E-value=0.37 Score=48.41 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.4
Q ss_pred EEEEeccCCCChhHHHHHHHhhCC
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
++.++|++||||||+.+.++..+.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCC
Confidence 889999999999999999986543
No 320
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.37 E-value=0.029 Score=57.62 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.2
Q ss_pred CcceEEEEeccCCCChhHHHHHHHh
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVK 288 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~ 288 (688)
.+.++++++|++||||||+.|.+..
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 3589999999999999999999853
No 321
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=94.36 E-value=0.14 Score=56.33 Aligned_cols=33 Identities=21% Similarity=0.336 Sum_probs=26.4
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEEc
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIS 299 (688)
++-++++|+||+|||++|+.++..+.. .++.+.
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~~-~~~~v~ 188 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETNA-TFIRVV 188 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCC-CEEecc
Confidence 556899999999999999999988763 344443
No 322
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=94.35 E-value=0.087 Score=60.44 Aligned_cols=37 Identities=19% Similarity=0.280 Sum_probs=28.5
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHH
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~I 303 (688)
++=++|.|+||+|||++|+.++.+.. ..++.++...+
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~-~~~~~i~~~~~ 124 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAG-VPFFSISGSDF 124 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcC-CCeeeccHHHH
Confidence 45589999999999999999998765 23556655443
No 323
>PRK06526 transposase; Provisional
Probab=94.35 E-value=0.16 Score=53.52 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=20.8
Q ss_pred ceEEEEeccCCCChhHHHHHHHhh
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~ 289 (688)
..-++++|+||+|||++|..+..+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHH
Confidence 456899999999999999988654
No 324
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.33 E-value=0.13 Score=53.91 Aligned_cols=126 Identities=18% Similarity=0.262 Sum_probs=64.0
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCc--eEEEEcchHHHHHhhcCCccc-cCCChHHHHHHHHHHHHHHHHHHHHHh
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLILEQMKVPGLLR-KHNYSERFQCLMGRANAIFDVLLSRAS 341 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k--~~vvIStD~Ir~~m~i~G~~r-~~~y~~~~e~l~~~a~~~l~~lie~aL 341 (688)
....|+++|.+||||||+.+.++...+.. ..+.|... .++.+.+... ....... ...+.++++.+|
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~---~E~~l~~~~~~~~~~~~~--------~~~~~~~l~~~L 194 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDP---PELRLPGPNQIQIQTRRD--------EISYEDLLKSAL 194 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESS---S-S--SCSSEEEEEEETT--------TBSHHHHHHHHT
T ss_pred cceEEEEECCCccccchHHHHHhhhccccccceEEeccc---cceeecccceEEEEeecC--------cccHHHHHHHHh
Confidence 36899999999999999999999887754 34555321 1111222100 0000100 001223566677
Q ss_pred cCCCe-EEEEcCCCCHHHHHHHHHHHhcCCC--EEEEEeCCHHHHHHHHHHhhccCCCCCcHHHHHhhh
Q 005604 342 RTPRN-FIIDQTNVFKSARKRKLRLFVNFRK--IAVVVFPKPEDLKIRSVKRFKEMGKEVPADAVNNML 407 (688)
Q Consensus 342 ~~G~n-VILDaTNl~rs~R~~~l~~~a~~~~--~~vV~~~~peel~~R~~kR~~~~g~~Vpeevi~~m~ 407 (688)
+.+-+ +||+-.--.... . +++.+..-+. ++-++..+..+...|+..= ...++.+.+.++.
T Consensus 195 R~~pD~iiigEiR~~e~~-~-~~~a~~tGh~~~~tT~Ha~s~~~~i~Rl~~l----~~~~~~~~l~~~l 257 (270)
T PF00437_consen 195 RQDPDVIIIGEIRDPEAA-E-AIQAANTGHLGSLTTLHANSAEDAIERLADL----GMEMDPESLRSRL 257 (270)
T ss_dssp TS--SEEEESCE-SCHHH-H-HHHHHHTT-EEEEEEEE-SSHHHHHHHHHHH----CCTSCHHHHHHHH
T ss_pred cCCCCcccccccCCHhHH-H-HHHhhccCCceeeeeeecCCHHHHHHHHHHH----hcccCHHHHHHHH
Confidence 76665 444443222222 2 2333332232 3455667778888999865 3236666665544
No 325
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.32 E-value=0.15 Score=55.50 Aligned_cols=114 Identities=15% Similarity=0.124 Sum_probs=60.9
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhC----CCceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHHh
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS 341 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~----~~k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL 341 (688)
...|+++|.+||||||+++.|+... +..+.+.|... .++.+... ....+... ....+.++++.+|
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~---~El~~~~~-~~v~~~~~-------~~~~~~~ll~~aL 216 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDT---GEIQCAAE-NYVQYHTS-------IDVNMTALLKTTL 216 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCC---CccccCCC-CEEEEecC-------CCCCHHHHHHHHh
Confidence 5678999999999999999998762 33445555321 12211110 00000000 0012345677778
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHhcCC--CEEEEEeCCHHHHHHHHHHhh
Q 005604 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKPEDLKIRSVKRF 391 (688)
Q Consensus 342 ~~G~nVILDaTNl~rs~R~~~l~~~a~~~--~~~vV~~~~peel~~R~~kR~ 391 (688)
+.+-++||=.=--..+.. .+++.+..-+ -++-++-.++...+.|+..-.
T Consensus 217 R~~PD~IivGEiR~~Ea~-~~l~A~~tGh~G~~tTiHa~s~~~ai~Rl~~l~ 267 (319)
T PRK13894 217 RMRPDRILVGEVRGPEAL-DLLMAWNTGHEGGAATLHANNAKAGLDRLKSLI 267 (319)
T ss_pred cCCCCEEEEeccCCHHHH-HHHHHHHcCCCceEEEECCCCHHHHHHHHHHHH
Confidence 777665554322233332 2444433323 355666677778888887654
No 326
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.29 E-value=0.21 Score=49.78 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=22.2
Q ss_pred cceEEEEeccCCCChhHHHHHHHhh
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKD 289 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~ 289 (688)
..+.|.++|++||||||+-+.++.-
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhc
Confidence 4788999999999999999998754
No 327
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.28 E-value=0.04 Score=58.69 Aligned_cols=39 Identities=28% Similarity=0.334 Sum_probs=30.6
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhC----CCceEEEEcchH
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNL 302 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~----~~k~~vvIStD~ 302 (688)
..+.+|+++|++|+||||++.+|+..+ +.+.+.+|+.|.
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 357899999999999999999987654 224567787775
No 328
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.28 E-value=0.26 Score=53.75 Aligned_cols=113 Identities=18% Similarity=0.118 Sum_probs=60.7
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhC----CCceEEEEcchHHHHHhhcCCc-cccCCChHHHHHHHHHHHHHHHHHHHHH
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNLILEQMKVPGL-LRKHNYSERFQCLMGRANAIFDVLLSRA 340 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~----~~k~~vvIStD~Ir~~m~i~G~-~r~~~y~~~~e~l~~~a~~~l~~lie~a 340 (688)
...|+++|.+||||||+.+.|+... ++.+.+.|- |. . ++.+... .-...... .-.+.++++.+
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiE-d~-~-El~~~~~n~v~l~~~~---------~~~~~~lv~~a 211 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILE-DT-A-EIQCAAENAVALHTSD---------TVDMARLLKST 211 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEec-CC-c-ccccCCCCEEEeccCC---------CcCHHHHHHHH
Confidence 3568999999999999999998765 333444442 21 1 2221110 00000000 01234577778
Q ss_pred hcCCCeEEEEcCCCCHHHHHHHHHHHhcCC--CEEEEEeCCHHHHHHHHHHhh
Q 005604 341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKPEDLKIRSVKRF 391 (688)
Q Consensus 341 L~~G~nVILDaTNl~rs~R~~~l~~~a~~~--~~~vV~~~~peel~~R~~kR~ 391 (688)
|+.+-++|+=.=--..+.. .+++.+..-+ -++-++..++.+..+|+..-.
T Consensus 212 LR~~PD~IivGEiRg~ea~-~~l~a~~tGh~G~itTiHA~s~~~a~~Rl~~l~ 263 (323)
T PRK13833 212 MRLRPDRIIVGEVRDGAAL-TLLKAWNTGHPGGVTTIHSNTAMSALRRLEQLT 263 (323)
T ss_pred hCCCCCEEEEeecCCHHHH-HHHHHHcCCCCceEEEECCCCHHHHHHHHHHHh
Confidence 8877765554321223332 2344433223 255666677778888987653
No 329
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.27 E-value=0.032 Score=59.19 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=28.6
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCC--ceEEEEcchHHH
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLIL 304 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~--k~~vvIStD~Ir 304 (688)
+|.++|.+||||||+++++.+.+.. ..+.+|+.|...
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yy 39 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFH 39 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccc
Confidence 5789999999999999999876542 236778877543
No 330
>PHA02244 ATPase-like protein
Probab=94.24 E-value=0.19 Score=55.66 Aligned_cols=78 Identities=17% Similarity=0.279 Sum_probs=45.8
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNF 347 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL~~G~nV 347 (688)
-|+|.|+||+|||++|+.++..+. ..++.++.. .+...+.|.... ...|.. ..++ .+++.|..+
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~lg-~pfv~In~l--~d~~~L~G~i~~---~g~~~d---------gpLl-~A~~~GgvL 184 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEALD-LDFYFMNAI--MDEFELKGFIDA---NGKFHE---------TPFY-EAFKKGGLF 184 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC-CCEEEEecC--hHHHhhcccccc---cccccc---------hHHH-HHhhcCCEE
Confidence 477899999999999999998765 346677532 222222332110 111210 0122 446789999
Q ss_pred EEEcCCCC-HHHHHH
Q 005604 348 IIDQTNVF-KSARKR 361 (688)
Q Consensus 348 ILDaTNl~-rs~R~~ 361 (688)
|||.-+.. ++....
T Consensus 185 iLDEId~a~p~vq~~ 199 (383)
T PHA02244 185 FIDEIDASIPEALII 199 (383)
T ss_pred EEeCcCcCCHHHHHH
Confidence 99986643 333333
No 331
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.19 E-value=0.4 Score=49.17 Aligned_cols=37 Identities=16% Similarity=0.298 Sum_probs=27.6
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhC--CCceEEEEcch
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN 301 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~--~~k~~vvIStD 301 (688)
...++++.|.|||||||++.+++... .....+.++.+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 57899999999999999999986432 22345566653
No 332
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.18 E-value=0.51 Score=55.48 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=24.7
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
+-+..++++|++|+||||+|+.+++.+.
T Consensus 33 r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 33 RINHAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4477899999999999999999998765
No 333
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=94.18 E-value=0.033 Score=58.01 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=22.2
Q ss_pred EeccCCCChhHHHHHHHhhCCC--ceEEEEcch
Q 005604 271 MVGLPASGKTTWAEKWVKDHPE--KRYILLGTN 301 (688)
Q Consensus 271 LvGLPGSGKST~Ar~L~~~~~~--k~~vvIStD 301 (688)
++|++||||||+++.+.+.+.. ....+|+.|
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcc
Confidence 5899999999999999876553 346777776
No 334
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.18 E-value=0.16 Score=56.39 Aligned_cols=42 Identities=19% Similarity=0.112 Sum_probs=34.2
Q ss_pred CCCcceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHH
Q 005604 262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL 304 (688)
Q Consensus 262 ~~~~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir 304 (688)
+.+-|..++|.|+||+|||.+|+.++++++. .+++|+.-++.
T Consensus 144 ~ik~PlgllL~GPPGcGKTllAraiA~elg~-~~i~vsa~eL~ 185 (413)
T PLN00020 144 NIKVPLILGIWGGKGQGKSFQCELVFKKMGI-EPIVMSAGELE 185 (413)
T ss_pred CCCCCeEEEeeCCCCCCHHHHHHHHHHHcCC-CeEEEEHHHhh
Confidence 3456899999999999999999999999873 36777766543
No 335
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.17 E-value=0.14 Score=54.88 Aligned_cols=41 Identities=17% Similarity=0.369 Sum_probs=30.6
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcc-hHHHHHh
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT-NLILEQM 307 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvISt-D~Ir~~m 307 (688)
-.-|+|-|+||.|||.+|++++-+... -++.||+ |.+-+.|
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATEAnS-TFFSvSSSDLvSKWm 207 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATEANS-TFFSVSSSDLVSKWM 207 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhhcCC-ceEEeehHHHHHHHh
Confidence 357899999999999999999877653 3666654 5554444
No 336
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.16 E-value=0.21 Score=58.95 Aligned_cols=28 Identities=29% Similarity=0.275 Sum_probs=24.3
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
+-+..+|++|++|+||||+|+.+++.+.
T Consensus 36 ri~ha~Lf~Gp~GvGKttlA~~lAk~L~ 63 (620)
T PRK14954 36 RVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (620)
T ss_pred CCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3466799999999999999999998765
No 337
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.13 E-value=0.24 Score=55.36 Aligned_cols=28 Identities=29% Similarity=0.275 Sum_probs=24.3
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
+-+..+|++|+||+||||+|+.+++.+.
T Consensus 36 ~~~ha~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 36 RVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHhc
Confidence 3467799999999999999999998764
No 338
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.13 E-value=0.4 Score=50.25 Aligned_cols=41 Identities=20% Similarity=0.325 Sum_probs=30.2
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCCC--ceEEEEcchHHHHHh
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQM 307 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~~--k~~vvIStD~Ir~~m 307 (688)
..++|+|.||+|||++|..++..+.. +.++.++..++...+
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l 142 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAM 142 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHH
Confidence 47899999999999999999876532 345566665555443
No 339
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.10 E-value=0.62 Score=46.07 Aligned_cols=28 Identities=18% Similarity=0.149 Sum_probs=23.8
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
+-+..+++.|.+|.||||+|+.+++.+-
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHc
Confidence 3467899999999999999999987753
No 340
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.07 E-value=0.22 Score=59.81 Aligned_cols=40 Identities=28% Similarity=0.286 Sum_probs=31.1
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhC----CCceEEEEcchHHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNLIL 304 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~----~~k~~vvIStD~Ir 304 (688)
..++|+|+|+.|+||||.+.+|+..+ +.+...+|..|..|
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R 227 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR 227 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc
Confidence 36899999999999999999998644 22356678888654
No 341
>PLN02796 D-glycerate 3-kinase
Probab=94.04 E-value=0.05 Score=59.65 Aligned_cols=39 Identities=21% Similarity=0.011 Sum_probs=30.2
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCCCc--eEEEEcchH
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNL 302 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~~k--~~vvIStD~ 302 (688)
+.+.+|-++|.+||||||+++.|...+... ....|+.|.
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDd 138 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDD 138 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECC
Confidence 468899999999999999999998776532 245566553
No 342
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.01 E-value=0.066 Score=49.21 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=21.3
Q ss_pred cceEEEEeccCCCChhHHHHHHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWV 287 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~ 287 (688)
..+++.++|++||||||+++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 46899999999999999999987
No 343
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.96 E-value=0.035 Score=54.63 Aligned_cols=28 Identities=32% Similarity=0.400 Sum_probs=23.5
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCc
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEK 293 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k 293 (688)
..=|+++|.||+||||++.++++.+..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 4558899999999999999998776644
No 344
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=93.93 E-value=0.78 Score=44.68 Aligned_cols=108 Identities=13% Similarity=0.156 Sum_probs=56.7
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCC-ceEEEEcchHHHHHhh-cCCccccCCChHHHHHHH-------HHHHHHHHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLILEQMK-VPGLLRKHNYSERFQCLM-------GRANAIFDV 335 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~-k~~vvIStD~Ir~~m~-i~G~~r~~~y~~~~e~l~-------~~a~~~l~~ 335 (688)
..+++.++|.+||||||+.+.++..+.. .+-+.+... +.+. +.... ........+.+. ..-.+..-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~---~~i~~~~q~~-~~~~~tv~~nl~~~~~~~LS~G~~~rv~ 101 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG---EDLLFLPQRP-YLPLGTLREQLIYPWDDVLSGGEQQRLA 101 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC---ceEEEECCCC-ccccccHHHHhhccCCCCCCHHHHHHHH
Confidence 4789999999999999999999876542 222333110 0000 00000 000000000000 000011112
Q ss_pred HHHHHhcCCCeEEEEc--CCCCHHHHHHHHHHHhcCCCEEEEEe
Q 005604 336 LLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFRKIAVVVF 377 (688)
Q Consensus 336 lie~aL~~G~nVILDa--TNl~rs~R~~~l~~~a~~~~~~vV~~ 377 (688)
++...+...+.+|+|- ++++...+.++++.+.+.. .+++++
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~-~tiiiv 144 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELG-ITVISV 144 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhC-CEEEEE
Confidence 3444466778899995 6788888888777777653 445544
No 345
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=93.93 E-value=0.55 Score=56.61 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=27.4
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEEcchH
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~ 302 (688)
.++++|++|+|||++|+.|++.+. ..++.++..+
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~-~~~~~~d~se 519 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALG-VHLERFDMSE 519 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhc-CCeEEEeCch
Confidence 689999999999999999999885 3456665433
No 346
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=93.93 E-value=0.53 Score=57.76 Aligned_cols=161 Identities=12% Similarity=0.108 Sum_probs=79.4
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCC--ceEEEEcchHHHHHhh---cCCccccC-CChHHHHHHHHHHHHHHHHHHHHHh
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMK---VPGLLRKH-NYSERFQCLMGRANAIFDVLLSRAS 341 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~--k~~vvIStD~Ir~~m~---i~G~~r~~-~y~~~~e~l~~~a~~~l~~lie~aL 341 (688)
+++++|++|+|||.+|+.|++.+.. ..++.++-.+..+... +.|....+ .|.. ...|...++.
T Consensus 598 ~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~---------~g~L~~~v~~-- 666 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGE---------GGVLTEAVRR-- 666 (852)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccc---------cchHHHHHHh--
Confidence 7899999999999999999987632 2355664333322211 22321111 1110 0011112211
Q ss_pred cCCCeEEEEcC-CCCHHHHHHHHHHHhcC------C-----CEEEEEeCC--H-HHHHHHHHHhhc-cCCCCCcHHHHHh
Q 005604 342 RTPRNFIIDQT-NVFKSARKRKLRLFVNF------R-----KIAVVVFPK--P-EDLKIRSVKRFK-EMGKEVPADAVNN 405 (688)
Q Consensus 342 ~~G~nVILDaT-Nl~rs~R~~~l~~~a~~------~-----~~~vV~~~~--p-eel~~R~~kR~~-~~g~~Vpeevi~~ 405 (688)
+....|+||.- -..+.....+++.+.+. + +-+++.+.+ . +.+.+....... .....+.+.+...
T Consensus 667 ~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (852)
T TIGR03345 667 KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPE 746 (852)
T ss_pred CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHH
Confidence 23346777852 23334444455555431 1 124555543 2 444432211100 0001112233344
Q ss_pred hhcccccCCCCCCCCCCCCCcEEEEeccCHHHHHHHHHHHH
Q 005604 406 MLANYVLPVNKDTPGSDELFDQVMFVELDREEAQRHLDEMK 446 (688)
Q Consensus 406 m~a~fE~P~~~~~p~~~EgfdeI~~~el~~~ea~~li~~~~ 446 (688)
..+.|.+.. -..++-|.|..++.+++.++++..-
T Consensus 747 ~~~~f~PEf-------lnRi~iI~F~pLs~e~l~~Iv~~~L 780 (852)
T TIGR03345 747 LLKVFKPAF-------LGRMTVIPYLPLDDDVLAAIVRLKL 780 (852)
T ss_pred HHHhccHHH-------hcceeEEEeCCCCHHHHHHHHHHHH
Confidence 555565433 3566767778899999999987643
No 347
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=93.92 E-value=0.069 Score=52.76 Aligned_cols=31 Identities=26% Similarity=0.527 Sum_probs=23.8
Q ss_pred EEEEeccCCCChhHHHHHHH-hhCCCceEEEE
Q 005604 268 VMMMVGLPASGKTTWAEKWV-KDHPEKRYILL 298 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~-~~~~~k~~vvI 298 (688)
+++++|..||||||+.++++ ....+.++.+|
T Consensus 2 v~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI 33 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLKRNRQGERVAVI 33 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCceeEEE
Confidence 68999999999999999999 44444445444
No 348
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.91 E-value=0.64 Score=54.02 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=24.5
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
+-+..++++|+||+||||+|+.+++.+.
T Consensus 36 ~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 36 RLHHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3467889999999999999999998875
No 349
>PRK06921 hypothetical protein; Provisional
Probab=93.87 E-value=0.65 Score=49.20 Aligned_cols=40 Identities=15% Similarity=0.115 Sum_probs=28.2
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCC---ceEEEEcchHHHH
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPE---KRYILLGTNLILE 305 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~---k~~vvIStD~Ir~ 305 (688)
..-++|.|.||+|||++|..++.++.. ..++.++..++.+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~ 159 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFG 159 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHH
Confidence 567899999999999999999876542 2244455443333
No 350
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.86 E-value=0.39 Score=56.66 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=24.0
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
-+..+|++|+||+||||+|+.+++.+.
T Consensus 37 i~ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 37 VAPAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcc
Confidence 356899999999999999999998775
No 351
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=93.86 E-value=0.17 Score=57.35 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=26.5
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCceEEEE
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILL 298 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvI 298 (688)
.++-++|+|+||+|||++|+.++..+... ++.|
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~-fi~V 248 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSAT-FLRV 248 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCC-EEEE
Confidence 46678899999999999999999887632 4444
No 352
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.81 E-value=0.28 Score=52.90 Aligned_cols=135 Identities=19% Similarity=0.169 Sum_probs=67.2
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCC-ceEEEEcchHHHHHhhcCC-ccccCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLILEQMKVPG-LLRKHNYSERFQCLMGRANAIFDVLLSRASR 342 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~-k~~vvIStD~Ir~~m~i~G-~~r~~~y~~~~e~l~~~a~~~l~~lie~aL~ 342 (688)
..+.++++|.+||||||+.+.|+...+. .+.+.| ++.. ++.+.. ..-...+...-+. ...-.+.+++..+|+
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~i--ed~~-El~~~~~~~~~l~~~~~~~~---~~~~~~~~~l~~~Lr 216 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITI--EDTR-EIFLPHPNYVHLFYSKGGQG---LAKVTPKDLLQSCLR 216 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccccEEEE--cCcc-ccCCCCCCEEEEEecCCCCC---cCccCHHHHHHHHhc
Confidence 4679999999999999999999987763 334445 2222 222111 0000000000000 000012234555555
Q ss_pred CCC-eEEEEcCCCCHHHHHHHHHHHhcCCC--EEEEEeCCHHHHHHHHHHhhc--cCCCCCcHHHHHhhh
Q 005604 343 TPR-NFIIDQTNVFKSARKRKLRLFVNFRK--IAVVVFPKPEDLKIRSVKRFK--EMGKEVPADAVNNML 407 (688)
Q Consensus 343 ~G~-nVILDaTNl~rs~R~~~l~~~a~~~~--~~vV~~~~peel~~R~~kR~~--~~g~~Vpeevi~~m~ 407 (688)
..- .+|||-.-- .+.. .+++.+..-+. +..++-.+......|+..... ..+..++++++.++.
T Consensus 217 ~~pd~ii~gE~r~-~e~~-~~l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~~~~i 284 (308)
T TIGR02788 217 MRPDRIILGELRG-DEAF-DFIRAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYIVKLV 284 (308)
T ss_pred CCCCeEEEeccCC-HHHH-HHHHHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHHHHHH
Confidence 444 577776432 3332 23444433232 233344445677888876543 223457777775544
No 353
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.80 E-value=0.26 Score=56.47 Aligned_cols=29 Identities=28% Similarity=0.282 Sum_probs=25.1
Q ss_pred CCcceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 263 ~~~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
.+=|+=|+|+|+||.|||-+||+++.+.+
T Consensus 334 GKLPKGVLLvGPPGTGKTlLARAvAGEA~ 362 (752)
T KOG0734|consen 334 GKLPKGVLLVGPPGTGKTLLARAVAGEAG 362 (752)
T ss_pred CcCCCceEEeCCCCCchhHHHHHhhcccC
Confidence 35578899999999999999999987754
No 354
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=93.78 E-value=0.064 Score=50.47 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=25.0
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCCC
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE 292 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~~ 292 (688)
+...+|+|.|.-|||||||+|.+++.++.
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 35789999999999999999999998863
No 355
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=93.77 E-value=0.064 Score=57.83 Aligned_cols=34 Identities=15% Similarity=0.288 Sum_probs=29.6
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~ 302 (688)
...+|+++|+.|||||.+|-+|++.. ..+||.|.
T Consensus 3 ~~~ii~I~GpTasGKS~LAl~LA~~~----~eIIsaDS 36 (300)
T PRK14729 3 ENKIVFIFGPTAVGKSNILFHFPKGK----AEIINVDS 36 (300)
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC----CcEEeccH
Confidence 45699999999999999999999884 36889886
No 356
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.77 E-value=0.96 Score=47.99 Aligned_cols=38 Identities=18% Similarity=0.316 Sum_probs=28.9
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~I 303 (688)
.|+-|++-|+||.|||..|++|+.+.. -..+.+.+..+
T Consensus 150 APknVLFyGppGTGKTm~Akalane~k-vp~l~vkat~l 187 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMAKALANEAK-VPLLLVKATEL 187 (368)
T ss_pred CcceeEEECCCCccHHHHHHHHhcccC-CceEEechHHH
Confidence 377899999999999999999997754 22555654443
No 357
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=93.76 E-value=0.71 Score=55.91 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=19.8
Q ss_pred eEEEEeccCCCChhHHHHHHHhh
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKD 289 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~ 289 (688)
.-++|+|.||+|||++|+.++..
T Consensus 208 ~n~LLvGppGvGKT~lae~la~~ 230 (758)
T PRK11034 208 NNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_pred CCeEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999865
No 358
>CHL00195 ycf46 Ycf46; Provisional
Probab=93.75 E-value=0.12 Score=59.32 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=28.7
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcch
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN 301 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD 301 (688)
.++-|+|.|+||+|||++|+.++.+... .++.++..
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~-~~~~l~~~ 293 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQL-PLLRLDVG 293 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCC-CEEEEEhH
Confidence 4678999999999999999999998762 35556443
No 359
>CHL00095 clpC Clp protease ATP binding subunit
Probab=93.74 E-value=0.42 Score=58.42 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.2
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhC
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~ 290 (688)
..-++|+|.||+|||++|+.|+...
T Consensus 200 ~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHHHHHH
Confidence 3456899999999999999998764
No 360
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.73 E-value=0.099 Score=54.64 Aligned_cols=39 Identities=21% Similarity=0.401 Sum_probs=28.8
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC--CceEEEEcchH
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNL 302 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~--~k~~vvIStD~ 302 (688)
....++++.|.||||||+|+.+++.+.- +...+.|++++
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e 61 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE 61 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC
Confidence 3578999999999999999988864322 23356666653
No 361
>PF13479 AAA_24: AAA domain
Probab=93.70 E-value=0.12 Score=52.54 Aligned_cols=31 Identities=32% Similarity=0.522 Sum_probs=25.0
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcch
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN 301 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD 301 (688)
++.-+++.|.||+||||+|..+ + +.++|++|
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~----~--k~l~id~E 32 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL----P--KPLFIDTE 32 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC----C--CeEEEEeC
Confidence 4667899999999999999988 2 25677665
No 362
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=93.69 E-value=0.081 Score=54.70 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=27.4
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhh
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK 308 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~ 308 (688)
+|.++|.|||||||+|+.+.+.... +.+--.|.|++.+.
T Consensus 2 iI~i~G~~gsGKstva~~~~~~g~~--~~~~~~d~ik~~l~ 40 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFIIENYNA--VKYQLADPIKEILA 40 (227)
T ss_pred EEEEeCCCCCCHHHHHHHHHhcCCc--EEEehhHHHHHHHH
Confidence 7899999999999999998765331 21223466666543
No 363
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=93.68 E-value=0.78 Score=54.80 Aligned_cols=35 Identities=23% Similarity=0.232 Sum_probs=26.8
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC-CceEEEEc
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG 299 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~-~k~~vvIS 299 (688)
..+.+.++|.+||||||+++.|+.-+. .++-+.++
T Consensus 490 ~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~id 525 (694)
T TIGR03375 490 PGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLD 525 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 467899999999999999999987654 23344443
No 364
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.67 E-value=0.56 Score=51.52 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=23.5
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
-+..++++|+||+||||+|+.+++.+.
T Consensus 38 ~~~~~L~~G~~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 38 LAQALLFCGPRGVGKTTCARILARKIN 64 (367)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 357899999999999999999987653
No 365
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.66 E-value=0.33 Score=54.13 Aligned_cols=40 Identities=18% Similarity=0.190 Sum_probs=31.2
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC--CceEEEEcchHH
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLI 303 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~--~k~~vvIStD~I 303 (688)
...++|+++|+.|+||||++.+|+..+. .+...+|+.|..
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDty 245 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTF 245 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence 4578999999999999999999876442 234667888854
No 366
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=93.65 E-value=0.074 Score=62.60 Aligned_cols=48 Identities=17% Similarity=0.370 Sum_probs=38.1
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHhhcCCc
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGL 312 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m~i~G~ 312 (688)
-+.-+++|+|+||.|||++++.+++.++ +.++++|.--+||+--+.|.
T Consensus 348 ~kGpILcLVGPPGVGKTSLgkSIA~al~-RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 348 LKGPILCLVGPPGVGKTSLGKSIAKALG-RKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred CCCcEEEEECCCCCCchhHHHHHHHHhC-CCEEEEecCccccHHHhccc
Confidence 3467999999999999999999999987 56899987656655444453
No 367
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.64 E-value=0.6 Score=57.36 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=27.0
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCC--CceEEEEcchH
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNL 302 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~--~k~~vvIStD~ 302 (688)
..++++|++|+||||+|+.|++.+. ...++.++...
T Consensus 599 ~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se 636 (857)
T PRK10865 599 GSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSE 636 (857)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHH
Confidence 3789999999999999999997653 22355564433
No 368
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.60 E-value=0.3 Score=56.47 Aligned_cols=39 Identities=26% Similarity=0.327 Sum_probs=29.9
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC----CceEEEEcchH
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNL 302 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~----~k~~vvIStD~ 302 (688)
....+|+|+|++|+||||++.+|+..+. .+...+|+.|.
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDt 390 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDT 390 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccc
Confidence 3578999999999999999999875421 23466777775
No 369
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=93.59 E-value=0.052 Score=52.52 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=18.5
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
.++.+++++|.+|+||||+.+++...+.
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4579999999999999999998876554
No 370
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=93.59 E-value=0.076 Score=59.66 Aligned_cols=39 Identities=15% Similarity=-0.052 Sum_probs=29.8
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCCC--ceEEEEcchH
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNL 302 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~~--k~~vvIStD~ 302 (688)
+.+.||-++|.+||||||+++.|...+.. ....+|+.|.
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDD 250 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDD 250 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECC
Confidence 35889999999999999999999765531 2355667664
No 371
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.58 E-value=0.74 Score=45.98 Aligned_cols=112 Identities=11% Similarity=0.091 Sum_probs=58.4
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhC--C-CceEEEEcc-h----HHHHHhhcCCccccCCCh--HHHHHHH--HH----
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDH--P-EKRYILLGT-N----LILEQMKVPGLLRKHNYS--ERFQCLM--GR---- 328 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~--~-~k~~vvISt-D----~Ir~~m~i~G~~r~~~y~--~~~e~l~--~~---- 328 (688)
..+++.++|.+||||||+.+.++..+ . ..+-+.+.- + .++..+..... ....+. ..++.+. ..
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q-~~~~~~~~t~~~~i~~~~~~~~L 112 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQ-DDILHPTLTVRETLMFAAKLRGL 112 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccC-cccCCCCCcHHHHHHHHHHhccC
Confidence 47899999999999999999998765 3 233344422 1 12221111000 000110 1111110 00
Q ss_pred --HHHHHHHHHHHHhcCCCeEEEEc--CCCCHHHHHHHHHHHhcCC--CEEEEEe
Q 005604 329 --ANAIFDVLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVF 377 (688)
Q Consensus 329 --a~~~l~~lie~aL~~G~nVILDa--TNl~rs~R~~~l~~~a~~~--~~~vV~~ 377 (688)
-.+..-.++...+.....+|+|. +.+....|+.+++.+.+.. ..++|++
T Consensus 113 S~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~ 167 (194)
T cd03213 113 SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICS 167 (194)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 01111223434456777888884 6778888887777766532 3344444
No 372
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=93.53 E-value=0.13 Score=58.91 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=23.9
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
.-|.++.++|+||+||||+.+.|++...
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~t 94 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFT 94 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHH
Confidence 3466777999999999999999998764
No 373
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.53 E-value=0.45 Score=56.20 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=24.6
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
+-+..++++|.+|+||||+|+.+++.+.
T Consensus 36 rl~ha~Lf~Gp~GvGKTtlAr~lAk~Ln 63 (618)
T PRK14951 36 RLHHAYLFTGTRGVGKTTVSRILAKSLN 63 (618)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4467899999999999999999988764
No 374
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.51 E-value=0.35 Score=56.82 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=24.3
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
+-+..+|++|++|+||||+|+.+++.+.
T Consensus 36 ~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 36 RVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3467899999999999999999998764
No 375
>PRK04328 hypothetical protein; Provisional
Probab=93.50 E-value=0.42 Score=49.91 Aligned_cols=37 Identities=14% Similarity=0.381 Sum_probs=27.4
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhC--CCceEEEEcch
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN 301 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~--~~k~~vvIStD 301 (688)
...++++.|.||+|||+++.+++.+. .....+.|+.+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~e 60 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALE 60 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEee
Confidence 47899999999999999998876431 22345666653
No 376
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.49 E-value=0.21 Score=57.95 Aligned_cols=32 Identities=22% Similarity=0.363 Sum_probs=26.4
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEE
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILL 298 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvI 298 (688)
+.=|+|||+||+|||-+|++++.+.+. .++.|
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~-NFisV 576 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGA-NFISV 576 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccC-ceEee
Confidence 667999999999999999999987662 35555
No 377
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.48 E-value=0.46 Score=48.39 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=26.9
Q ss_pred cceEEEEeccCCCChhHHHHHHHhh--CCCceEEEEcch
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKD--HPEKRYILLGTN 301 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~--~~~k~~vvIStD 301 (688)
...++++.|.||+||||++..++.. ...+..+.++.+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e 57 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE 57 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 5789999999999999999877532 122345566553
No 378
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.45 E-value=0.15 Score=61.27 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=29.4
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~I 303 (688)
.++-|+|.|+||+|||++|+.++.+.. ..++.|+..++
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e~~-~~fi~v~~~~l 523 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATESG-ANFIAVRGPEI 523 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcC-CCEEEEehHHH
Confidence 355689999999999999999998876 34666654443
No 379
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=93.39 E-value=0.8 Score=46.57 Aligned_cols=37 Identities=16% Similarity=0.382 Sum_probs=27.1
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhC--CCceEEEEcch
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN 301 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~--~~k~~vvIStD 301 (688)
...++++.|.||+|||+++..++... ..+..+.++.+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 47899999999999999999887432 12345556553
No 380
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=93.39 E-value=0.38 Score=57.90 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.3
Q ss_pred EEEEeccCCCChhHHHHHHHhhCC
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
-+++.|+||+||||+|+.+++...
T Consensus 54 slLL~GPpGtGKTTLA~aIA~~~~ 77 (725)
T PRK13341 54 SLILYGPPGVGKTTLARIIANHTR 77 (725)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 468899999999999999988765
No 381
>PTZ00202 tuzin; Provisional
Probab=93.35 E-value=0.5 Score=53.64 Aligned_cols=27 Identities=15% Similarity=0.357 Sum_probs=24.1
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
.+.+++++|.+|+||||+++.+....+
T Consensus 285 ~privvLtG~~G~GKTTLlR~~~~~l~ 311 (550)
T PTZ00202 285 HPRIVVFTGFRGCGKSSLCRSAVRKEG 311 (550)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 356999999999999999999997766
No 382
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.34 E-value=0.73 Score=44.10 Aligned_cols=103 Identities=20% Similarity=0.238 Sum_probs=56.2
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCC-ceEEEEcchHH----HHHhh-cCCccccCCChHHHHHHHHHHHHHHHHHHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLI----LEQMK-VPGLLRKHNYSERFQCLMGRANAIFDVLLS 338 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~-k~~vvIStD~I----r~~m~-i~G~~r~~~y~~~~e~l~~~a~~~l~~lie 338 (688)
..+++.++|.+||||||+.+.+...+.. .+-+.+....+ .+... ..+...+ .-..+. ....++.
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q-lS~G~~---------~r~~l~~ 93 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ-LSGGQR---------QRVALAR 93 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee-CCHHHH---------HHHHHHH
Confidence 4689999999999999999999876542 22333322111 00000 0000000 001110 0112333
Q ss_pred HHhcCCCeEEEEc--CCCCHHHHHHHHHHHhcCC--CEEEEEe
Q 005604 339 RASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVF 377 (688)
Q Consensus 339 ~aL~~G~nVILDa--TNl~rs~R~~~l~~~a~~~--~~~vV~~ 377 (688)
..+.....+|+|. ++++...+.++++.+.... ...++++
T Consensus 94 ~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~ 136 (157)
T cd00267 94 ALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIV 136 (157)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 4456778999995 6788888887777766532 2344444
No 383
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=93.33 E-value=0.27 Score=52.21 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=21.2
Q ss_pred EEEEeccCCCChhHHHHHHHhhCC
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
.++++|.||+||||+++.+++.+.
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Confidence 369999999999999999988753
No 384
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=93.31 E-value=0.076 Score=57.36 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=32.1
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~I 303 (688)
.+.+|+++|+.|||||-+|-.|++.++ ..+||.|..
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~---~eIIs~DSm 37 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLG---GEIISLDSM 37 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcC---CcEEecchh
Confidence 367999999999999999999999998 578999863
No 385
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.29 E-value=0.078 Score=57.99 Aligned_cols=38 Identities=21% Similarity=0.331 Sum_probs=29.1
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCCC--ceEEEEcch
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTN 301 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~~--k~~vvIStD 301 (688)
..+.+|-++|+|||||||++..|...+.. ....+|+.|
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~D 93 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVD 93 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeC
Confidence 45789999999999999999988665432 345666665
No 386
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.25 E-value=0.64 Score=50.93 Aligned_cols=26 Identities=19% Similarity=0.242 Sum_probs=23.0
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
..+|+++|++||||||+.+.++....
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 57899999999999999999887654
No 387
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=93.25 E-value=0.56 Score=52.17 Aligned_cols=117 Identities=13% Similarity=0.036 Sum_probs=56.4
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCC----CceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASR 342 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~----~k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL~ 342 (688)
-+++++|++||||||+.+.+++... ..+.+.|. |-+ + +.+.+.. ........+ +-.. ...+..+++.+|+
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiE-dp~-E-~~~~~~~-~~~~~~q~e-vg~~-~~~~~~~l~~aLR 223 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYE-DPI-E-YILGSPD-DLLPPAQSQ-IGRD-VDSFANGIRLALR 223 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe-cCc-h-hccCCCc-eeecccccc-cCCC-ccCHHHHHHHhhc
Confidence 4789999999999999999976552 23344452 211 1 1111110 000000000 0000 0123346667788
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhcCCC--EEEEEeCCHHHHHHHHHHh
Q 005604 343 TPRNFIIDQTNVFKSARKRKLRLFVNFRK--IAVVVFPKPEDLKIRSVKR 390 (688)
Q Consensus 343 ~G~nVILDaTNl~rs~R~~~l~~~a~~~~--~~vV~~~~peel~~R~~kR 390 (688)
..-++|+=.=--..+.-...++. +.-+. +..++-.+..+.+.|+..=
T Consensus 224 ~~PD~I~vGEiRd~et~~~al~a-a~TGH~v~tTlHa~s~~~ai~Rl~~~ 272 (372)
T TIGR02525 224 RAPKIIGVGEIRDLETFQAAVLA-GQSGHFCLGTLHVKSPGEAISRCLQM 272 (372)
T ss_pred cCCCEEeeCCCCCHHHHHHHHHH-HhcCCcEEEeeCCCCHHHHHHHHHHh
Confidence 77766654422333322222332 33332 2333445567888888754
No 388
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.23 E-value=0.58 Score=57.45 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=22.3
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhC
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDH 290 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~ 290 (688)
...-+||+|.||+||||+|+.|+...
T Consensus 198 ~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 198 TKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CcCceEEECCCCCCHHHHHHHHHHHh
Confidence 34467899999999999999999876
No 389
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=93.23 E-value=0.075 Score=51.65 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=25.8
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcch
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN 301 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD 301 (688)
..-++++|.+|+||||+|..|.+.- +..|+.|
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~g----~~lvaDD 45 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKRG----HRLVADD 45 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHcC----CeEEECC
Confidence 5679999999999999999998753 4556655
No 390
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.22 E-value=0.63 Score=55.24 Aligned_cols=28 Identities=25% Similarity=0.196 Sum_probs=24.8
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
+-+..++++|++|+||||+|+.+++.+.
T Consensus 35 rl~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 35 RLHHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3468999999999999999999998865
No 391
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.21 E-value=0.065 Score=48.20 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=19.9
Q ss_pred EEEeccCCCChhHHHHHHHhhCC
Q 005604 269 MMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 269 IILvGLPGSGKST~Ar~L~~~~~ 291 (688)
|+++|.+|||||||.++|+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 68999999999999999986543
No 392
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=93.16 E-value=0.054 Score=60.74 Aligned_cols=28 Identities=25% Similarity=0.481 Sum_probs=23.7
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCc
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEK 293 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k 293 (688)
.+=|++.|.||+||||||++|++-+..+
T Consensus 263 aeGILIAG~PGaGKsTFaqAlAefy~~~ 290 (604)
T COG1855 263 AEGILIAGAPGAGKSTFAQALAEFYASQ 290 (604)
T ss_pred hcceEEecCCCCChhHHHHHHHHHHHhc
Confidence 5678999999999999999998765533
No 393
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.13 E-value=0.052 Score=49.20 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.6
Q ss_pred EEEeccCCCChhHHHHHHHhhC
Q 005604 269 MMMVGLPASGKTTWAEKWVKDH 290 (688)
Q Consensus 269 IILvGLPGSGKST~Ar~L~~~~ 290 (688)
|+|.|.||.|||++|+.|++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999988664
No 394
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=93.13 E-value=0.89 Score=54.42 Aligned_cols=112 Identities=15% Similarity=0.168 Sum_probs=59.2
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC-CceEEEEcc--------hHHHHHhhc--------CCccccC-CCh---HHH
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGT--------NLILEQMKV--------PGLLRKH-NYS---ERF 322 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~-~k~~vvISt--------D~Ir~~m~i--------~G~~r~~-~y~---~~~ 322 (688)
+..+.+.++|.+||||||+++.|+.-+. .++-+.++- +.+|+.+.. .|..+++ .+. ...
T Consensus 503 ~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~ 582 (710)
T TIGR03796 503 QPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPD 582 (710)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCH
Confidence 3478899999999999999999987654 234455532 233443321 1111111 000 001
Q ss_pred HHHHHHHHH-HHHHHHHHHhcCCCeEEEE--cCCCCHHHHHHHHHHHhcC-CCEEEEEe
Q 005604 323 QCLMGRANA-IFDVLLSRASRTPRNFIID--QTNVFKSARKRKLRLFVNF-RKIAVVVF 377 (688)
Q Consensus 323 e~l~~~a~~-~l~~lie~aL~~G~nVILD--aTNl~rs~R~~~l~~~a~~-~~~~vV~~ 377 (688)
+++.+.+.. .+.+.+ ..+..|.+-+|. ..|++-.+|++ +..++.. .+..++.+
T Consensus 583 ~~i~~al~~~~l~~~i-~~lp~gl~t~i~e~G~~LSGGQrQR-iaLARall~~p~iliL 639 (710)
T TIGR03796 583 ADLVRACKDAAIHDVI-TSRPGGYDAELAEGGANLSGGQRQR-LEIARALVRNPSILIL 639 (710)
T ss_pred HHHHHHHHHhCCHHHH-HhCcCcccceeccCCCCCCHHHHHH-HHHHHHHhhCCCEEEE
Confidence 222222221 233444 235567665554 47898888887 6655542 23344444
No 395
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.12 E-value=0.066 Score=57.84 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=22.9
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhh
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKD 289 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~ 289 (688)
.+.+++++.||+||||||+.|.+-+-
T Consensus 52 ~~GeIfViMGLSGSGKSTLvR~~NrL 77 (386)
T COG4175 52 EEGEIFVIMGLSGSGKSTLVRLLNRL 77 (386)
T ss_pred cCCeEEEEEecCCCCHHHHHHHHhcc
Confidence 47899999999999999999988543
No 396
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=93.10 E-value=0.48 Score=53.96 Aligned_cols=39 Identities=10% Similarity=0.129 Sum_probs=28.5
Q ss_pred EEEEeccCCCChhHHHHHHHhh----CCCceEEEEcchHHHHH
Q 005604 268 VMMMVGLPASGKTTWAEKWVKD----HPEKRYILLGTNLILEQ 306 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~----~~~k~~vvIStD~Ir~~ 306 (688)
-+++.|.+|+|||++++.+... .+...++.++.+++...
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~ 185 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARK 185 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH
Confidence 4789999999999999998763 23345667776655443
No 397
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=93.10 E-value=0.062 Score=52.62 Aligned_cols=26 Identities=38% Similarity=0.488 Sum_probs=23.2
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCCC
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHPE 292 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~~ 292 (688)
.+|.++|.+||||||++++|...+..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~ 27 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSA 27 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999987653
No 398
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.07 E-value=0.058 Score=53.26 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=19.3
Q ss_pred EEEeccCCCChhHHHHHHHhhC
Q 005604 269 MMMVGLPASGKTTWAEKWVKDH 290 (688)
Q Consensus 269 IILvGLPGSGKST~Ar~L~~~~ 290 (688)
|+++|.||+||||+.+++++.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999998776
No 399
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=93.06 E-value=1.1 Score=55.19 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=22.1
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhC
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDH 290 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~ 290 (688)
...-+||+|.||+|||++|+.|+...
T Consensus 193 ~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 193 TKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 34566789999999999999998775
No 400
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.05 E-value=0.91 Score=52.54 Aligned_cols=28 Identities=21% Similarity=0.124 Sum_probs=24.7
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
+-+..++++|++|+||||+|+.+++.+.
T Consensus 36 ~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 36 YLHHAYLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred CCCeeEEEECCCCCCHHHHHHHHHHHhc
Confidence 3467899999999999999999998875
No 401
>PRK05636 replicative DNA helicase; Provisional
Probab=93.02 E-value=0.73 Score=53.30 Aligned_cols=107 Identities=16% Similarity=0.265 Sum_probs=54.9
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC---CceEEEEcc----hHHHHHhh--cCCc----cccC-CChHHHHHHHHHH
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGT----NLILEQMK--VPGL----LRKH-NYSERFQCLMGRA 329 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~---~k~~vvISt----D~Ir~~m~--i~G~----~r~~-~y~~~~e~l~~~a 329 (688)
....||++.|-||.||||||..++.... .+...++|. +.+..++- ..+. ++.. ...++|+.+.+.+
T Consensus 263 ~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R~ls~~s~v~~~~i~~g~l~~~e~~~~~~a~ 342 (505)
T PRK05636 263 RGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMRLLSAEAEVRLSDMRGGKMDEDAWEKLVQRL 342 (505)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 4588999999999999999887764321 233445554 33333221 0111 0010 1134454443322
Q ss_pred HHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHHhcCCCEEEEEeCC
Q 005604 330 NAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPK 379 (688)
Q Consensus 330 ~~~l~~lie~aL~~G~nVILDaTNl~rs~R~~~l~~~a~~~~~~vV~~~~ 379 (688)
. . +.....+|-|..+++-..-+..++.++..+.+.+|+++-
T Consensus 343 ~--------~-l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~~~~lvvIDY 383 (505)
T PRK05636 343 G--------K-IAQAPIFIDDSANLTMMEIRSKARRLKQKHDLKLIVVDY 383 (505)
T ss_pred H--------H-HhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcc
Confidence 1 1 334456666777777544433455554433344554443
No 402
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.99 E-value=0.27 Score=50.01 Aligned_cols=37 Identities=24% Similarity=0.422 Sum_probs=26.8
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhC--C-CceEEEEcch
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDH--P-EKRYILLGTN 301 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~--~-~k~~vvIStD 301 (688)
...++++.|.||||||+++.+++.+. . +..++.|+.+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~e 57 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFE 57 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEec
Confidence 57899999999999999999876332 1 2346667664
No 403
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=92.99 E-value=0.17 Score=58.81 Aligned_cols=102 Identities=16% Similarity=0.189 Sum_probs=58.7
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCC-ceEEEE--------cchHHHHHhhc-C-------CccccC-CChH---HHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILL--------GTNLILEQMKV-P-------GLLRKH-NYSE---RFQ 323 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~-k~~vvI--------StD~Ir~~m~i-~-------G~~r~~-~y~~---~~e 323 (688)
..+.+-++|.+||||||+++.|.+-+.. .+-+.| +.+.+|+.+.+ . |..+++ .++. .-+
T Consensus 354 ~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~e 433 (567)
T COG1132 354 PGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDE 433 (567)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHH
Confidence 4677889999999999999999876553 334455 22344554431 1 111111 0110 113
Q ss_pred HHHHHHHH-HHHHHHHHHhcCCCeEEEE--cCCCCHHHHHHHHHHHhc
Q 005604 324 CLMGRANA-IFDVLLSRASRTPRNFIID--QTNVFKSARKRKLRLFVN 368 (688)
Q Consensus 324 ~l~~~a~~-~l~~lie~aL~~G~nVILD--aTNl~rs~R~~~l~~~a~ 368 (688)
++.+.++. ++.+.++. +-+|.+-+|. ..+++-.+|.+ +..++.
T Consensus 434 ei~~a~k~a~~~d~I~~-lp~g~dt~vge~G~~LSgGQrQr-laiARa 479 (567)
T COG1132 434 EIEEALKLANAHEFIAN-LPDGYDTIVGERGVNLSGGQRQR-LAIARA 479 (567)
T ss_pred HHHHHHHHhChHHHHHh-CcccccceecCCCccCCHHHHHH-HHHHHH
Confidence 34443333 24455533 3568888887 47899888886 666554
No 404
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.97 E-value=0.058 Score=52.49 Aligned_cols=24 Identities=46% Similarity=0.548 Sum_probs=21.3
Q ss_pred EEEEeccCCCChhHHHHHHHhhCC
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
+|.++|.+||||||++.+|++.+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~ 24 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALK 24 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999988754
No 405
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=92.97 E-value=0.065 Score=49.75 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=27.5
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC-CceEEEEc
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG 299 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~-~k~~vvIS 299 (688)
..+++.++|.+||||||+.+.++.... ..+.+.++
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~ 45 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILIN 45 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEET
T ss_pred CCCEEEEEccCCCccccceeeecccccccccccccc
Confidence 478999999999999999999987664 23455554
No 406
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=92.97 E-value=0.4 Score=53.59 Aligned_cols=40 Identities=25% Similarity=0.268 Sum_probs=31.2
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC----CceEEEEcchHHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNLIL 304 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~----~k~~vvIStD~Ir 304 (688)
+..+|+|+|+.|.||||-..+|+..+. .++.-+|++|..|
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYR 245 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYR 245 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccch
Confidence 478999999999999998777776543 2456788999754
No 407
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=92.95 E-value=0.68 Score=56.05 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=26.8
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCCCceEEEEcc
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvISt 300 (688)
-.++++|+||+|||++|+.|++.+. ..++.++-
T Consensus 489 ~~~Lf~GP~GvGKT~lAk~LA~~l~-~~~i~id~ 521 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVTVQLSKALG-IELLRFDM 521 (758)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC-CCcEEeec
Confidence 3689999999999999999999885 34555643
No 408
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.94 E-value=0.083 Score=58.97 Aligned_cols=39 Identities=21% Similarity=0.163 Sum_probs=30.8
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC------CceEEEEcchHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP------EKRYILLGTNLI 303 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~------~k~~vvIStD~I 303 (688)
.+.+|+++|++|+||||.+.+|+..+. .+...+|+.|..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~ 217 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNY 217 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCc
Confidence 478999999999999999999986542 244667888863
No 409
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=92.93 E-value=0.083 Score=58.40 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=26.0
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCc
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEK 293 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k 293 (688)
.+.+|.++|++||||||++.+|++.+..+
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~~~ 32 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRLSER 32 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHhhC
Confidence 47899999999999999999999888753
No 410
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=92.90 E-value=0.096 Score=56.21 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=28.9
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCCC--ceEEEEcch
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTN 301 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~~--k~~vvIStD 301 (688)
....+|.++|+|||||||++..+...+.. ..+.+|+.|
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D 71 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVD 71 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 45889999999999999999998765432 235566666
No 411
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=92.88 E-value=0.51 Score=55.22 Aligned_cols=28 Identities=25% Similarity=0.287 Sum_probs=24.2
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
+-+..++++|++|+||||+|+.+++.+.
T Consensus 36 ~~~hayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 36 KISHAYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3467899999999999999999988754
No 412
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=92.88 E-value=0.36 Score=53.76 Aligned_cols=114 Identities=16% Similarity=0.203 Sum_probs=66.4
Q ss_pred CCcceEEEEeccCCCChhHHHHHHHhhCCCc--eEEEEcchHHHHHhhcCCcc------------ccC-----------C
Q 005604 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLILEQMKVPGLL------------RKH-----------N 317 (688)
Q Consensus 263 ~~~~~LIILvGLPGSGKST~Ar~L~~~~~~k--~~vvIStD~Ir~~m~i~G~~------------r~~-----------~ 317 (688)
.....++|++|+-.|||||++.-|+.++-.+ ++.+|.+|.=...+...|.. .+. .
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~pPg~ISL~~~~s~~~~L~~l~~~~~~FvG~is 149 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIGPPGFISLAFPESPVISLSELEPFTLYFVGSIS 149 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCCCcccCCCceEEeecccCCCCCHHHcCccceEEEeccC
Confidence 3457799999999999999999999887643 36778777210000001110 000 0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHH--HHhcCCCEEEEEeCCH
Q 005604 318 YSERFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLR--LFVNFRKIAVVVFPKP 380 (688)
Q Consensus 318 y~~~~e~l~~~a~~~l~~lie~aL~~G~nVILDaTNl~rs~R~~~l~--~~a~~~~~~vV~~~~p 380 (688)
-...+..++ .|..+|++.|.+.-..+|||.+-+.+.++-..++ ++...+.-.|++++..
T Consensus 150 P~~~~~~~i----~~v~rL~~~a~~~~~~ilIdT~GWi~G~~g~elk~~li~~ikP~~Ii~l~~~ 210 (398)
T COG1341 150 PQGFPGRYI----AGVARLVDLAKKEADFILIDTDGWIKGWGGLELKRALIDAIKPDLIIALERA 210 (398)
T ss_pred CCCChHHHH----HHHHHHHHHhhccCCEEEEcCCCceeCchHHHHHHHHHhhcCCCEEEEeccc
Confidence 012233333 3455678777777778899999888764332222 2222334466667553
No 413
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.80 E-value=0.059 Score=51.60 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=21.7
Q ss_pred EEEEeccCCCChhHHHHHHHhhCC
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
+|++||..+|||||+++.|+..+.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~ 25 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELK 25 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 789999999999999999987665
No 414
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.80 E-value=0.51 Score=55.42 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=24.5
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
+-+..++++|++|+||||+|+.+++.+.
T Consensus 36 ~~~hayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 36 RVAHAFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 3467899999999999999999998764
No 415
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=92.79 E-value=0.12 Score=52.16 Aligned_cols=29 Identities=31% Similarity=0.397 Sum_probs=25.0
Q ss_pred CCcceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 263 ~~~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
.+...+|.++|.+|||||||..+++..+.
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34688999999999999999999987744
No 416
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=92.77 E-value=0.75 Score=54.86 Aligned_cols=112 Identities=19% Similarity=0.189 Sum_probs=59.2
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC-CceEEEEc--------chHHHHHhhc--------CCccccC-CCh--HHHHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG--------TNLILEQMKV--------PGLLRKH-NYS--ERFQC 324 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~-~k~~vvIS--------tD~Ir~~m~i--------~G~~r~~-~y~--~~~e~ 324 (688)
..+.+.++|.+||||||+++.|+.-+. ..+-+.|+ .+.+|+.+.. .|..+++ .+. ...++
T Consensus 478 ~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~ 557 (686)
T TIGR03797 478 PGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDE 557 (686)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHH
Confidence 478899999999999999999987654 23344443 2344444321 1111111 000 00122
Q ss_pred HHHHHHH-HHHHHHHHHhcCCCeEEEE--cCCCCHHHHHHHHHHHhcC-CCEEEEEeC
Q 005604 325 LMGRANA-IFDVLLSRASRTPRNFIID--QTNVFKSARKRKLRLFVNF-RKIAVVVFP 378 (688)
Q Consensus 325 l~~~a~~-~l~~lie~aL~~G~nVILD--aTNl~rs~R~~~l~~~a~~-~~~~vV~~~ 378 (688)
+.+.++. .+.+.+ ..+..|.+-+|. ..+++..+|++ +..++.. .+..++.++
T Consensus 558 i~~al~~a~l~~~i-~~lp~G~dt~ige~G~~LSGGQrQR-ialARAll~~p~iLiLD 613 (686)
T TIGR03797 558 AWEAARMAGLAEDI-RAMPMGMHTVISEGGGTLSGGQRQR-LLIARALVRKPRILLFD 613 (686)
T ss_pred HHHHHHHcCcHHHH-HhccccccccccCCCCCCCHHHHHH-HHHHHHHhcCCCEEEEe
Confidence 2222221 233444 235567665554 37889888887 6655542 333444453
No 417
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=92.75 E-value=0.093 Score=57.18 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=26.4
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCCCceEEEEcc
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvISt 300 (688)
.-|+|.|+||+||||+|+.+++.++. .++.|+.
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~-~~~rV~~ 97 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNW-PCVRVNL 97 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCC-CeEEEEe
Confidence 35899999999999999999998873 3445543
No 418
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=92.68 E-value=1.3 Score=51.40 Aligned_cols=35 Identities=29% Similarity=0.303 Sum_probs=27.2
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC-CceEEEEc
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG 299 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~-~k~~vvIS 299 (688)
..+.+.++|.+||||||+++.|...+. .++-+.++
T Consensus 357 ~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~ 392 (571)
T TIGR02203 357 PGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLD 392 (571)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEEC
Confidence 478899999999999999999987654 23345554
No 419
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=92.67 E-value=0.07 Score=64.01 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=27.7
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHH
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~I 303 (688)
+|.+.|+|||||||+|+.|++.++ +..|++..+
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~---~~~~~~g~~ 35 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLG---YAYLDTGAM 35 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CcEeecCcE
Confidence 688999999999999999999987 556655543
No 420
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=92.65 E-value=0.11 Score=63.46 Aligned_cols=38 Identities=16% Similarity=0.154 Sum_probs=33.5
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHHHh
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~~m 307 (688)
.+|.+.|+|||||||+|+.|++.++ +..|+++.+.+.+
T Consensus 35 ~~i~idG~~gsGKst~~~~la~~l~---~~~~~~g~~yRa~ 72 (863)
T PRK12269 35 VIIALDGPAGSGKSSVCRLLASRLG---AQCLNTGSFYRAF 72 (863)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC---CcEEeHHHHHHHH
Confidence 5899999999999999999999998 6788888776654
No 421
>PRK06835 DNA replication protein DnaC; Validated
Probab=92.62 E-value=1 Score=49.36 Aligned_cols=41 Identities=22% Similarity=0.304 Sum_probs=30.6
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCCC--ceEEEEcchHHHHHh
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQM 307 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~~--k~~vvIStD~Ir~~m 307 (688)
.-++|+|.+|+|||++|..++.++-. ..++.++.+++.+.+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l 226 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL 226 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence 67999999999999999999876532 335566666665544
No 422
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=92.62 E-value=0.093 Score=48.77 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.2
Q ss_pred ceEEEEeccCCCChhHHHHHHHhh
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~ 289 (688)
...|+++|.+||||||++.++...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 567999999999999999998754
No 423
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=92.59 E-value=0.21 Score=55.00 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=21.8
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhC
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~ 290 (688)
+..++++|.||+||||+++.+++++
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4557899999999999999998765
No 424
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=92.58 E-value=0.11 Score=62.84 Aligned_cols=34 Identities=21% Similarity=0.429 Sum_probs=27.5
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcc
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvISt 300 (688)
...++|+|+||+||||+|+.+++.+.. .++.++.
T Consensus 347 ~~~lll~GppG~GKT~lAk~iA~~l~~-~~~~i~~ 380 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSIAKALNR-KFVRFSL 380 (775)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcC-CeEEEeC
Confidence 458999999999999999999998763 3555643
No 425
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.57 E-value=0.14 Score=54.87 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=28.3
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCCC-ceEEEEc
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLG 299 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~~-k~~vvIS 299 (688)
+...+|-|+|.|||||||+..+++..+.. .+..+|.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~ 138 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIE 138 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEEC
Confidence 45789999999999999999999887643 3355553
No 426
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.56 E-value=0.39 Score=55.88 Aligned_cols=40 Identities=18% Similarity=0.274 Sum_probs=32.9
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHHHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE 305 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~Ir~ 305 (688)
-++=|++.|+||+|||.+|++++.+++ -.++.|+.-+|.-
T Consensus 222 PprGvLlHGPPGCGKT~lA~AiAgel~-vPf~~isApeivS 261 (802)
T KOG0733|consen 222 PPRGVLLHGPPGCGKTSLANAIAGELG-VPFLSISAPEIVS 261 (802)
T ss_pred CCCceeeeCCCCccHHHHHHHHhhhcC-CceEeecchhhhc
Confidence 367789999999999999999999887 3477888776643
No 427
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=92.55 E-value=0.071 Score=53.96 Aligned_cols=22 Identities=41% Similarity=0.738 Sum_probs=20.0
Q ss_pred EEEeccCCCChhHHHHHHHhhC
Q 005604 269 MMMVGLPASGKTTWAEKWVKDH 290 (688)
Q Consensus 269 IILvGLPGSGKST~Ar~L~~~~ 290 (688)
|++.|.|||||||+.++++...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999873
No 428
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.54 E-value=0.79 Score=56.29 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=21.0
Q ss_pred eEEEEeccCCCChhHHHHHHHhhC
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDH 290 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~ 290 (688)
.=+||+|.||+||||+|+.|++..
T Consensus 209 ~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred CceeEECCCCCCHHHHHHHHHHHH
Confidence 346799999999999999999875
No 429
>PRK08939 primosomal protein DnaI; Reviewed
Probab=92.52 E-value=1.2 Score=48.28 Aligned_cols=106 Identities=12% Similarity=0.174 Sum_probs=60.3
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCc--eEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASR 342 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k--~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL~ 342 (688)
...-++|.|.+|+|||++|..++.++..+ .+..+...++...++. .+.+ ..+...++ .++
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~-------~~~~----------~~~~~~l~-~l~ 216 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKN-------SISD----------GSVKEKID-AVK 216 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHH-------HHhc----------CcHHHHHH-Hhc
Confidence 34679999999999999999998775422 2445555555444430 0000 01112332 245
Q ss_pred CCCeEEEEcCC---CCHHHHHHHHHHHhc--C-CCEEEEEeCC--HHHHHHHHH
Q 005604 343 TPRNFIIDQTN---VFKSARKRKLRLFVN--F-RKIAVVVFPK--PEDLKIRSV 388 (688)
Q Consensus 343 ~G~nVILDaTN---l~rs~R~~~l~~~a~--~-~~~~vV~~~~--peel~~R~~ 388 (688)
.-..+|||.-. ++...|..++..+-. + .+..+++-.. .++|.+++.
T Consensus 217 ~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~~~~ 270 (306)
T PRK08939 217 EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHLA 270 (306)
T ss_pred CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHh
Confidence 66789999743 566667666665422 1 2333433322 377777664
No 430
>CHL00176 ftsH cell division protein; Validated
Probab=92.52 E-value=0.29 Score=58.03 Aligned_cols=37 Identities=19% Similarity=0.308 Sum_probs=28.6
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcchHH
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD~I 303 (688)
++-++|.|+||+|||++|+.++.+.. ..++.++...+
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~~-~p~i~is~s~f 252 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEAE-VPFFSISGSEF 252 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC-CCeeeccHHHH
Confidence 55699999999999999999998765 33566654443
No 431
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.51 E-value=0.86 Score=48.39 Aligned_cols=117 Identities=19% Similarity=0.237 Sum_probs=63.6
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC-CceEEEEcch--------H----HHHHhhcCCcccc----CC--C-hHHHH
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGTN--------L----ILEQMKVPGLLRK----HN--Y-SERFQ 323 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~-~k~~vvIStD--------~----Ir~~m~i~G~~r~----~~--y-~~~~e 323 (688)
++.+.+-++|-+||||||+++.++.-.. ..+-+.+.-. . +.+.+...|...+ +. + +...+
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 3688999999999999999999987544 2233444321 1 1111212232110 10 0 11111
Q ss_pred HHHHHHHHHHHHHHHHHhc-CCCeEEEEc--CCCCHHHHHHHHHHHhcCC---CEEEEEeCCHHHHHHHHHHh
Q 005604 324 CLMGRANAIFDVLLSRASR-TPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKPEDLKIRSVKR 390 (688)
Q Consensus 324 ~l~~~a~~~l~~lie~aL~-~G~nVILDa--TNl~rs~R~~~l~~~a~~~---~~~vV~~~~peel~~R~~kR 390 (688)
+-.+.+||. +-.-+|.|- ..+..+.|.+.+.++.+.+ ....+|+.-+-...+.+..|
T Consensus 117 ----------Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdr 179 (268)
T COG4608 117 ----------RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDR 179 (268)
T ss_pred ----------hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhccc
Confidence 112234433 556777773 6778888888888887643 45666664433333334444
No 432
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=92.49 E-value=0.2 Score=53.94 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=24.3
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCC
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE 292 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~ 292 (688)
..-+.++-|+||.|||+.|..+++++..
T Consensus 56 ~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 56 ILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred CCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 4557899999999999999999988763
No 433
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=92.49 E-value=0.28 Score=56.63 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=23.3
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
+.=++|.|+||+|||++|+.++..+.
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhc
Confidence 55689999999999999999998865
No 434
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=92.49 E-value=0.15 Score=49.61 Aligned_cols=25 Identities=24% Similarity=0.423 Sum_probs=21.8
Q ss_pred EEEEeccCCCChhHHHHHHHhhCCC
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHPE 292 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~~ 292 (688)
+++++|..|||||||.+.+.+....
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~~~ 26 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQHG 26 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhcccC
Confidence 6889999999999999999877543
No 435
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=92.43 E-value=0.16 Score=51.46 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=25.7
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCCC-ceEEEEcch
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTN 301 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~~-k~~vvIStD 301 (688)
..|.++|.+||||||+.+++...+.. .+..++..|
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d 37 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRALRQKYQLAVITND 37 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCC
Confidence 46889999999999999999877542 233444443
No 436
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=92.40 E-value=0.69 Score=51.04 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=22.4
Q ss_pred CcceEEEEeccCCCChhHHHHHHHh
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVK 288 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~ 288 (688)
++.+++.|.|++||||||+-+.++.
T Consensus 29 ~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 29 KKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3578999999999999999999975
No 437
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=92.39 E-value=0.12 Score=59.87 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=24.9
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
...+++|+|+|||||||.++.|+++++
T Consensus 44 ~~~iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 44 PKRILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 466999999999999999999999987
No 438
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.33 E-value=0.69 Score=53.08 Aligned_cols=37 Identities=14% Similarity=0.270 Sum_probs=27.2
Q ss_pred cceEEEEeccCCCChhHHHHHHHhh---CCCceEEEEcch
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKD---HPEKRYILLGTN 301 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~---~~~k~~vvIStD 301 (688)
...+++++|.|||||||+|.+++.+ ...+..+.|+.+
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 5789999999999999999998543 112345556543
No 439
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.32 E-value=0.13 Score=50.23 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=24.7
Q ss_pred EEEEeccCCCChhHHHHHHHhhC--CCceEEEEcch
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN 301 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~--~~k~~vvIStD 301 (688)
++++.|.||+|||+++.+++... .++.++.++.+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 37899999999999998886532 12346667663
No 440
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=92.31 E-value=0.27 Score=56.27 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=25.5
Q ss_pred CCcceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 263 ~~~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
.+.++.+++.|+||+|||.+|+.++.+..
T Consensus 273 ~~~~~giLl~GpPGtGKT~lAkava~~~~ 301 (494)
T COG0464 273 LRPPKGVLLYGPPGTGKTLLAKAVALESR 301 (494)
T ss_pred CCCCCeeEEECCCCCCHHHHHHHHHhhCC
Confidence 35677999999999999999999998665
No 441
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=92.29 E-value=0.14 Score=52.83 Aligned_cols=37 Identities=11% Similarity=0.197 Sum_probs=26.4
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhC--CCceEEEEcch
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN 301 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~--~~k~~vvIStD 301 (688)
...++++.|.||+||||+|.+++... .+...+.|+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e 61 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ 61 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 46799999999999999987765432 22345556554
No 442
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=92.27 E-value=0.1 Score=53.38 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=19.9
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCCC
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHPE 292 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~~ 292 (688)
.=++|.|.||+|||++|+++..-++.
T Consensus 23 h~lLl~GppGtGKTmlA~~l~~lLP~ 48 (206)
T PF01078_consen 23 HHLLLIGPPGTGKTMLARRLPSLLPP 48 (206)
T ss_dssp --EEEES-CCCTHHHHHHHHHHCS--
T ss_pred CCeEEECCCCCCHHHHHHHHHHhCCC
Confidence 45889999999999999999987773
No 443
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.25 E-value=1.8 Score=50.03 Aligned_cols=33 Identities=27% Similarity=0.263 Sum_probs=24.7
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEE
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILL 298 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvI 298 (688)
.+=+-++|.+||||||+.+.|.+=+...+-+.|
T Consensus 378 GekVaIvG~nGsGKSTilr~LlrF~d~sG~I~I 410 (591)
T KOG0057|consen 378 GEKVAIVGSNGSGKSTILRLLLRFFDYSGSILI 410 (591)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccCCcEEE
Confidence 455669999999999999999875443334455
No 444
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=92.23 E-value=1.6 Score=51.13 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=27.0
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCC-ceEEEEc
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLG 299 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~-k~~vvIS 299 (688)
..+.+.++|.+||||||+++.+...+.. .+-+.|+
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~ 395 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILID 395 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEEC
Confidence 4788999999999999999999876542 3344443
No 445
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=92.21 E-value=1.6 Score=50.79 Aligned_cols=35 Identities=26% Similarity=0.287 Sum_probs=27.5
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCC-ceEEEEc
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLG 299 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~-k~~vvIS 299 (688)
..+.+.++|.+||||||+++.++..+.. ++-+.++
T Consensus 365 ~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~ 400 (576)
T TIGR02204 365 PGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLD 400 (576)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEEC
Confidence 5789999999999999999999876642 3344443
No 446
>PRK08760 replicative DNA helicase; Provisional
Probab=92.21 E-value=0.72 Score=52.91 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=27.4
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC---CceEEEEcc
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGT 300 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~---~k~~vvISt 300 (688)
....|||+.|-||.|||+||..++.... .+.+.++|.
T Consensus 227 ~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSl 266 (476)
T PRK08760 227 QPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSM 266 (476)
T ss_pred CCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEec
Confidence 3578999999999999999988875421 233555555
No 447
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=92.19 E-value=1.7 Score=50.89 Aligned_cols=35 Identities=29% Similarity=0.276 Sum_probs=27.6
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCC-ceEEEEc
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLG 299 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~-k~~vvIS 299 (688)
..+.+.++|.+||||||+++.+...+.. ++-+.++
T Consensus 366 ~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~id 401 (592)
T PRK10790 366 SRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLD 401 (592)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEEC
Confidence 4788999999999999999999876642 3445554
No 448
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=92.18 E-value=0.76 Score=53.46 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=23.8
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhC
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDH 290 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~ 290 (688)
+-+.+++++|++|+||||+|+.+++.+
T Consensus 34 rl~hayLf~Gp~G~GKTt~Ar~LAk~L 60 (535)
T PRK08451 34 RLAHAYLFSGLRGSGKTSSARIFARAL 60 (535)
T ss_pred CCCeeEEEECCCCCcHHHHHHHHHHHh
Confidence 346788999999999999999998775
No 449
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=92.12 E-value=1.5 Score=49.27 Aligned_cols=38 Identities=16% Similarity=0.350 Sum_probs=27.6
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhC---CCceEEEEcch
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDH---PEKRYILLGTN 301 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~---~~k~~vvIStD 301 (688)
....|+++.|.||+|||||+..++... .+.....+|.+
T Consensus 193 ~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlE 233 (434)
T TIGR00665 193 QPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLE 233 (434)
T ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCc
Confidence 357899999999999999998876542 12335556653
No 450
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=92.07 E-value=1.7 Score=50.32 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=23.4
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhC
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDH 290 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~ 290 (688)
..+++.++|..||||||+.+.++..+
T Consensus 26 ~Ge~~~liG~NGsGKSTLl~~l~Gl~ 51 (530)
T PRK15064 26 GGNRYGLIGANGCGKSTFMKILGGDL 51 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998754
No 451
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=92.06 E-value=0.096 Score=50.59 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=20.7
Q ss_pred eEEEEeccCCCChhHHHHHHHhhC
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDH 290 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~ 290 (688)
+=||++|..||||||++++|....
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 348999999999999999997643
No 452
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=92.03 E-value=1 Score=53.46 Aligned_cols=27 Identities=26% Similarity=0.198 Sum_probs=24.0
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
-...+|++|.+|+||||+|+.+++.+.
T Consensus 37 l~hAyLf~Gp~GvGKTTlAr~lAk~L~ 63 (647)
T PRK07994 37 LHHAYLFSGTRGVGKTTIARLLAKGLN 63 (647)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 356799999999999999999998875
No 453
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=92.00 E-value=1.2 Score=50.08 Aligned_cols=37 Identities=19% Similarity=0.281 Sum_probs=27.7
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC---CceEEEEcc
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGT 300 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~---~k~~vvISt 300 (688)
....|+++.|.||+|||+||..++.... ...+..+|.
T Consensus 192 ~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSl 231 (421)
T TIGR03600 192 VKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSL 231 (421)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 3578999999999999999988874321 234556664
No 454
>PLN03130 ABC transporter C family member; Provisional
Probab=92.00 E-value=0.57 Score=61.31 Aligned_cols=107 Identities=13% Similarity=0.201 Sum_probs=62.0
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCCC-c-eEEE-------Ecc------hHHHHHhhcCCccccCCChH-HHHHHHH
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE-K-RYIL-------LGT------NLILEQMKVPGLLRKHNYSE-RFQCLMG 327 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~~-k-~~vv-------ISt------D~Ir~~m~i~G~~r~~~y~~-~~e~l~~ 327 (688)
+..++++++|..||||||+++.|...+.. + +-+. ++. ++||+-+. +|. .+.+ ++++..+
T Consensus 641 ~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~-fg~----~~d~e~y~~vl~ 715 (1622)
T PLN03130 641 PVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNIL-FGS----PFDPERYERAID 715 (1622)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHh-CCC----cccHHHHHHHHH
Confidence 35889999999999999999999987642 2 1222 222 34454432 332 1222 2233333
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEE--cCCCCHHHHHHHHHHHhc-CCCEEEEEeCC
Q 005604 328 RANAIFDVLLSRASRTPRNFIID--QTNVFKSARKRKLRLFVN-FRKIAVVVFPK 379 (688)
Q Consensus 328 ~a~~~l~~lie~aL~~G~nVILD--aTNl~rs~R~~~l~~~a~-~~~~~vV~~~~ 379 (688)
.| ++...+ ..+..|..-+|. ..+++-.+|+| +.+++. +.+..++.++.
T Consensus 716 a~--~L~~di-~~LP~Gd~T~IGe~G~~LSGGQKQR-IaLARAly~~~~IlLLDE 766 (1622)
T PLN03130 716 VT--ALQHDL-DLLPGGDLTEIGERGVNISGGQKQR-VSMARAVYSNSDVYIFDD 766 (1622)
T ss_pred Hh--CcHHHH-HhCCCcccccccCCCCCCCHHHHHH-HHHHHHHhCCCCEEEECC
Confidence 22 233334 345677766665 47899888887 666665 34444555544
No 455
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=91.99 E-value=0.92 Score=53.39 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=23.9
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
-+..++++|++|+||||+|+.+++.+.
T Consensus 37 l~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 37 LTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 367899999999999999999998764
No 456
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=91.98 E-value=1.9 Score=50.34 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=23.8
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
..+.+.++|.+||||||+++.+...+.
T Consensus 340 ~G~~~~ivG~sGsGKSTLl~ll~g~~~ 366 (569)
T PRK10789 340 PGQMLGICGPTGSGKSTLLSLIQRHFD 366 (569)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 578999999999999999999987654
No 457
>PRK13768 GTPase; Provisional
Probab=91.90 E-value=0.14 Score=53.60 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=27.1
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCC--CceEEEEcch
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~--~k~~vvIStD 301 (688)
+.++++.|.+||||||++..++..+. +++..+|+.|
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D 39 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLD 39 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECC
Confidence 46899999999999999888875443 2346677665
No 458
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=91.83 E-value=1 Score=49.38 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=22.3
Q ss_pred eEEEEeccCCCChhHHHHHHHhhC
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDH 290 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~ 290 (688)
.++|+.|.||||||.+|-.++.++
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 589999999999999999998887
No 459
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=91.82 E-value=0.14 Score=62.15 Aligned_cols=36 Identities=22% Similarity=0.459 Sum_probs=29.1
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCCceEEEEcch
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN 301 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIStD 301 (688)
...+++++|+||+||||+++.+++.++. .++.++..
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~-~~~~i~~~ 383 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIAKATGR-KYVRMALG 383 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCC-CEEEEEcC
Confidence 4668999999999999999999988763 36666544
No 460
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=91.80 E-value=0.13 Score=57.82 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=26.1
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEE
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILL 298 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvI 298 (688)
+.-|+|+|+||+||||+|+.|++.+.. .++.+
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l~~-~fi~v 78 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLANA-PFIKV 78 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCC-eEEEe
Confidence 567899999999999999999988762 34444
No 461
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.79 E-value=0.59 Score=55.32 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=23.0
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
..-++++|.+|+||||+|+.+++.+.
T Consensus 38 ~~a~Lf~Gp~G~GKttlA~~lAk~L~ 63 (620)
T PRK14948 38 APAYLFTGPRGTGKTSSARILAKSLN 63 (620)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhc
Confidence 45689999999999999999998865
No 462
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.76 E-value=0.45 Score=51.63 Aligned_cols=118 Identities=19% Similarity=0.150 Sum_probs=66.0
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCC-ceEEEEcchHHHHHhhcC-CccccCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLILEQMKVP-GLLRKHNYSERFQCLMGRANAIFDVLLSRASRT 343 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~-k~~vvIStD~Ir~~m~i~-G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL~~ 343 (688)
.+-|++||.+||||||+-..+..-.+. .+.+.| ++.. ++.+. ..+-.......... .+.-.+..+++.||+.
T Consensus 143 ~~siii~G~t~sGKTt~lnall~~Ip~~~rivtI--Edt~-E~~~~~~n~~~l~~r~~~~~---~~~v~~~dll~aalR~ 216 (312)
T COG0630 143 RKSIIICGGTASGKTTLLNALLDFIPPEERIVTI--EDTP-ELKLPHENWVQLVTREGESG---SSEVSLEDLLRAALRQ 216 (312)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCchhcEEEE--eccc-cccCCCCCEEEEEecCCCCC---ccccCHHHHHHHHHhc
Confidence 567899999999999999999887763 334444 2221 22222 11100000000000 0111244577888999
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhcCC-CEEEEEeCCHHHHHHHHHHh
Q 005604 344 PRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKPEDLKIRSVKR 390 (688)
Q Consensus 344 G~nVILDaTNl~rs~R~~~l~~~a~~~-~~~vV~~~~peel~~R~~kR 390 (688)
+-+.||...--.++... +++....-+ ...-++..+++.+.+|+...
T Consensus 217 rPd~IivgEvrg~e~~~-~~~a~~tGh~~isT~ha~s~~~~~~rl~~~ 263 (312)
T COG0630 217 RPDYIIVGELRGREAFV-LFQAMQTGHGTISTIHADSPELVLDRLTEL 263 (312)
T ss_pred CCCeEEEeeeecHHHHH-HHHHHhcCCCceeEEecCCHHHHHHHHhhc
Confidence 99988887644443333 233333323 44555566778889998864
No 463
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=91.75 E-value=0.1 Score=44.27 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=20.5
Q ss_pred EEEEeccCCCChhHHHHHHHhhCC
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
+++++|.+|+||||++..++..+.
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~ 24 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALA 24 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 478899999999999999987664
No 464
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=91.74 E-value=0.15 Score=51.53 Aligned_cols=37 Identities=24% Similarity=0.325 Sum_probs=28.2
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC--CceEEEEcch
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~--~k~~vvIStD 301 (688)
...+++++|.|||||||++..++.... +...+.|+++
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 578999999999999999999875532 2345566554
No 465
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=91.72 E-value=0.12 Score=49.25 Aligned_cols=29 Identities=24% Similarity=0.436 Sum_probs=20.5
Q ss_pred EEEeccCCCChhHHHHHHHhhCCCceEEEE
Q 005604 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILL 298 (688)
Q Consensus 269 IILvGLPGSGKST~Ar~L~~~~~~k~~vvI 298 (688)
++|-|.||.||||+|+.+++..+. .+.+|
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~-~f~RI 30 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGL-SFKRI 30 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT---EEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCC-ceeEE
Confidence 689999999999999999998874 34444
No 466
>PRK09165 replicative DNA helicase; Provisional
Probab=91.67 E-value=1.1 Score=51.86 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=21.2
Q ss_pred CcceEEEEeccCCCChhHHHHHHHh
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVK 288 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~ 288 (688)
....|+|+.|.||.||||||..++.
T Consensus 215 ~~g~livIaarpg~GKT~~al~ia~ 239 (497)
T PRK09165 215 HPSDLIILAGRPSMGKTALATNIAF 239 (497)
T ss_pred CCCceEEEEeCCCCChHHHHHHHHH
Confidence 3578999999999999999876643
No 467
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=91.66 E-value=0.29 Score=58.71 Aligned_cols=112 Identities=19% Similarity=0.175 Sum_probs=61.4
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCCC-ceEEEE--------cchHHHHHhhc--------CCccccC----CChHHHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILL--------GTNLILEQMKV--------PGLLRKH----NYSERFQ 323 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~~-k~~vvI--------StD~Ir~~m~i--------~G~~r~~----~y~~~~e 323 (688)
..+.|.++|-+||||||+++-+..-+.. .+-+.+ +.+.+|+++++ .|..++. ......+
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e 577 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDE 577 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHH
Confidence 4778999999999999999999865432 223333 22355665541 1211111 0001113
Q ss_pred HHHHHHHH-HHHHHHHHHhcCCCeEEEE--cCCCCHHHHHHHHHHHhcC-CCEEEEEeC
Q 005604 324 CLMGRANA-IFDVLLSRASRTPRNFIID--QTNVFKSARKRKLRLFVNF-RKIAVVVFP 378 (688)
Q Consensus 324 ~l~~~a~~-~l~~lie~aL~~G~nVILD--aTNl~rs~R~~~l~~~a~~-~~~~vV~~~ 378 (688)
++++.|.. .++..+ ..+-.|.+-+|- +.|++-.+|.+ +..++.. .+-.++.++
T Consensus 578 ~i~~A~~~ag~~~fI-~~lP~gy~t~v~E~G~~LSGGQrQr-lalARaLl~~P~ILlLD 634 (709)
T COG2274 578 EIIEAAQLAGAHEFI-ENLPMGYDTPVGEGGANLSGGQRQR-LALARALLSKPKILLLD 634 (709)
T ss_pred HHHHHHHHhCcHHHH-HhcccccccccccCCCCCCHHHHHH-HHHHHHhccCCCEEEEe
Confidence 34443332 223344 345667765553 58899888887 6665553 333444554
No 468
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.65 E-value=0.72 Score=54.70 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=23.9
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
..++++|.|+||+||||+++.+++.+.
T Consensus 109 ~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 109 PKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 457899999999999999999998765
No 469
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.63 E-value=0.67 Score=54.83 Aligned_cols=28 Identities=29% Similarity=0.306 Sum_probs=24.1
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
+-+..++++|++|+||||+|+.+++.+.
T Consensus 37 ~l~hayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 37 KLAHAYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred CCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3467899999999999999999988653
No 470
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=91.61 E-value=0.16 Score=50.90 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=28.1
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC--CceEEEEcch
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~--~k~~vvIStD 301 (688)
...++.++|.||||||+++..++.... +...+.|+++
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 578999999999999999998875321 2346667654
No 471
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=91.61 E-value=0.55 Score=56.36 Aligned_cols=36 Identities=31% Similarity=0.279 Sum_probs=27.7
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCCC-ceEEEEc
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLG 299 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~~-k~~vvIS 299 (688)
+..+.+.++|.+||||||+++.|...+.. ++-+.|+
T Consensus 505 ~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~id 541 (711)
T TIGR00958 505 HPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLD 541 (711)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEEC
Confidence 35789999999999999999999876542 3344443
No 472
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=91.60 E-value=0.13 Score=49.88 Aligned_cols=21 Identities=19% Similarity=0.469 Sum_probs=18.9
Q ss_pred EEEeccCCCChhHHHHHHHhh
Q 005604 269 MMMVGLPASGKTTWAEKWVKD 289 (688)
Q Consensus 269 IILvGLPGSGKST~Ar~L~~~ 289 (688)
|+|+|.||+||||++.++...
T Consensus 4 v~l~G~~g~GKTtl~~~~~~~ 24 (180)
T cd04137 4 IAVLGSRSVGKSSLTVQFVEG 24 (180)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 679999999999999999854
No 473
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=91.58 E-value=0.14 Score=51.64 Aligned_cols=34 Identities=21% Similarity=0.164 Sum_probs=26.8
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC-CceEEEE
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILL 298 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~-~k~~vvI 298 (688)
..+++.++|.+||||||+.+.++..++ ..+-+.+
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~ 63 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRV 63 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEE
Confidence 478999999999999999999987654 2334444
No 474
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=91.57 E-value=0.16 Score=57.16 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=26.7
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCCceEEEEc
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvIS 299 (688)
+.-|+|+|+||+||||+|+.|++.+. ..++.+.
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~-~~fi~vD 82 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLAN-APFIKVE 82 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC-Chheeec
Confidence 56789999999999999999998875 2355553
No 475
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=91.57 E-value=0.17 Score=48.84 Aligned_cols=34 Identities=26% Similarity=0.487 Sum_probs=25.5
Q ss_pred EEEEeccCCCChhHHHHHHHhhCC--CceEEEEcch
Q 005604 268 VMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (688)
Q Consensus 268 LIILvGLPGSGKST~Ar~L~~~~~--~k~~vvIStD 301 (688)
++.++|.+||||||++..+...+. +.++.++..|
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D 36 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAID 36 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 478899999999999998876542 2346666666
No 476
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=91.56 E-value=1.2 Score=53.40 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=24.4
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
+-+..++++|++|.||||+|+.+++.+.
T Consensus 38 rl~HAYLF~GP~GtGKTt~AriLAk~Ln 65 (725)
T PRK07133 38 KISHAYLFSGPRGTGKTSVAKIFANALN 65 (725)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 3467899999999999999999988764
No 477
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.54 E-value=0.16 Score=58.29 Aligned_cols=38 Identities=26% Similarity=0.272 Sum_probs=29.6
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhC----CCceEEEEcchH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNL 302 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~----~~k~~vvIStD~ 302 (688)
.+.+|+|+|++|+||||.+.+|+..+ +.+.+.+|..|.
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt 296 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDS 296 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCc
Confidence 46899999999999999999998644 223466677775
No 478
>PRK06321 replicative DNA helicase; Provisional
Probab=91.51 E-value=1.3 Score=50.78 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=27.3
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhC---CCceEEEEcc
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDH---PEKRYILLGT 300 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~---~~k~~vvISt 300 (688)
....|||+.|-||.|||+||..++... ..+...++|.
T Consensus 224 ~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSL 263 (472)
T PRK06321 224 SPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSL 263 (472)
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEec
Confidence 347899999999999999998887643 1234445555
No 479
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=91.50 E-value=0.14 Score=57.55 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=25.8
Q ss_pred eEEEEeccCCCChhHHHHHHHhhCCCceEEEEcc
Q 005604 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (688)
Q Consensus 267 ~LIILvGLPGSGKST~Ar~L~~~~~~k~~vvISt 300 (688)
.-++|+|+||+||||+|+.+++.+. ..++.++.
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~-~pf~~id~ 141 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILD-VPFAIADA 141 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhC-CCceecch
Confidence 3588999999999999999998765 23555543
No 480
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=91.50 E-value=0.14 Score=46.81 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=19.4
Q ss_pred EEEeccCCCChhHHHHHHHhhC
Q 005604 269 MMMVGLPASGKTTWAEKWVKDH 290 (688)
Q Consensus 269 IILvGLPGSGKST~Ar~L~~~~ 290 (688)
|+++|.+||||||+..++....
T Consensus 4 i~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 4 IVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999997653
No 481
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=91.50 E-value=0.63 Score=52.21 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=23.2
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
....++++|.||+||||+++.+.....
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 467889999999999999999887643
No 482
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=91.48 E-value=1.9 Score=50.14 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=24.0
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
..+++.++|..||||||+.+.|+....
T Consensus 49 ~GEivgIiGpNGSGKSTLLkiLaGLl~ 75 (549)
T PRK13545 49 EGEIVGIIGLNGSGKSTLSNLIAGVTM 75 (549)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999999987653
No 483
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=91.48 E-value=2.2 Score=49.52 Aligned_cols=27 Identities=33% Similarity=0.419 Sum_probs=24.2
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
..+.+.++|.+||||||+++.++..+.
T Consensus 343 ~G~~~~ivG~sGsGKSTL~~ll~g~~~ 369 (544)
T TIGR01842 343 AGEALAIIGPSGSGKSTLARLIVGIWP 369 (544)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999999987654
No 484
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=91.46 E-value=0.15 Score=53.25 Aligned_cols=26 Identities=35% Similarity=0.564 Sum_probs=23.6
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhh
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKD 289 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~ 289 (688)
....+|.++|.+|+||||+|+.++.+
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccc
Confidence 46899999999999999999998866
No 485
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=91.44 E-value=0.14 Score=47.22 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=18.9
Q ss_pred EEEeccCCCChhHHHHHHHhh
Q 005604 269 MMMVGLPASGKTTWAEKWVKD 289 (688)
Q Consensus 269 IILvGLPGSGKST~Ar~L~~~ 289 (688)
|+++|.|||||||+..++...
T Consensus 3 i~~~G~~~~GKStl~~~l~~~ 23 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDG 23 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999999754
No 486
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=91.43 E-value=0.19 Score=54.10 Aligned_cols=114 Identities=18% Similarity=0.135 Sum_probs=60.7
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCC----CceEEEEcchHHHHHhhcCCc-cccCCChHHHHHHHHHHHHHHHHHHHHH
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNLILEQMKVPGL-LRKHNYSERFQCLMGRANAIFDVLLSRA 340 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~----~k~~vvIStD~Ir~~m~i~G~-~r~~~y~~~~e~l~~~a~~~l~~lie~a 340 (688)
...|+++|.+||||||+++.|+...+ ..+.+.|. | .. ++.+.+. .-...... . + ..+.++++.+
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiE-d-~~-El~~~~~~~v~~~~~~---~----~-~~~~~~l~~a 200 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIE-D-TR-ELQCAAPNVVQLRTSD---D----A-ISMTRLLKAT 200 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEEC-C-ch-hhcCCCCCEEEEEecC---C----C-CCHHHHHHHH
Confidence 45788999999999999999987753 24455552 2 22 2222111 00000000 0 0 0244567777
Q ss_pred hcCCCeEEEEcCCCCHHHHHHHHHHHhcCC--CEEEEEeCCHHHHHHHHHHhh
Q 005604 341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKPEDLKIRSVKRF 391 (688)
Q Consensus 341 L~~G~nVILDaTNl~rs~R~~~l~~~a~~~--~~~vV~~~~peel~~R~~kR~ 391 (688)
|+.+-++|+=.---..+. ..+++.+..-+ -++-++..++.+...|+..-.
T Consensus 201 LR~~pD~iivGEiR~~ea-~~~l~a~~tGh~G~~tTiHa~~~~~ai~Rl~~l~ 252 (299)
T TIGR02782 201 LRLRPDRIIVGEVRGGEA-LDLLKAWNTGHPGGIATIHANNAKAALDRLEQLI 252 (299)
T ss_pred hcCCCCEEEEeccCCHHH-HHHHHHHHcCCCCeEEeeccCCHHHHHHHHHHHH
Confidence 887776554332223332 22344333222 245556666778888887553
No 487
>PRK05973 replicative DNA helicase; Provisional
Probab=91.42 E-value=0.18 Score=52.70 Aligned_cols=45 Identities=11% Similarity=0.254 Sum_probs=30.6
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhC--CCceEEEEcc----hHHHHHhh
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGT----NLILEQMK 308 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~--~~k~~vvISt----D~Ir~~m~ 308 (688)
....++++.|.||+||||++..++... .++..+.++. +.+++.+.
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R~~ 112 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDRLR 112 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHH
Confidence 457899999999999999998876532 1233455554 34555543
No 488
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.41 E-value=0.16 Score=50.67 Aligned_cols=27 Identities=11% Similarity=0.118 Sum_probs=23.9
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
..+++.++|.+||||||+.+.++..+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999999987644
No 489
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=91.40 E-value=0.64 Score=48.48 Aligned_cols=104 Identities=17% Similarity=0.243 Sum_probs=55.1
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC---CceEEEEcch----HHHHHhh--cCCcc----ccCCC-hHHHHHHHHHHH
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTN----LILEQMK--VPGLL----RKHNY-SERFQCLMGRAN 330 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~---~k~~vvIStD----~Ir~~m~--i~G~~----r~~~y-~~~~e~l~~~a~ 330 (688)
...|+++.|.||+|||+||..++.... ...+..+|.+ .+..++- ..+.. +.... ..+|+++.
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~v~~~~i~~g~l~~~e~~~~~---- 93 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSGVPYNKIRSGDLSDEEFERLQ---- 93 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHTSTHHHHHCCGCHHHHHHHHH----
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhcchhhhhhccccCHHHHHHHH----
Confidence 478999999999999999988875321 2346677764 2322211 11210 01111 12232221
Q ss_pred HHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHHhcC-CCEEEEEe
Q 005604 331 AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNF-RKIAVVVF 377 (688)
Q Consensus 331 ~~l~~lie~aL~~G~nVILDaTNl~rs~R~~~l~~~a~~-~~~~vV~~ 377 (688)
... ..+.....+|.|...++.+.-...++.++.. ..+.+|++
T Consensus 94 ----~~~-~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~I 136 (259)
T PF03796_consen 94 ----AAA-EKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFI 136 (259)
T ss_dssp ----HHH-HHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEE
T ss_pred ----HHH-HHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEe
Confidence 122 1234445677777677777666666666654 45555544
No 490
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=91.40 E-value=2.5 Score=50.68 Aligned_cols=36 Identities=33% Similarity=0.323 Sum_probs=27.1
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC-CceEEEEc
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG 299 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~-~k~~vvIS 299 (688)
+..+.+.++|.+||||||+++.|+.-+. .++-+.|+
T Consensus 498 ~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~id 534 (708)
T TIGR01193 498 KMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLN 534 (708)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEC
Confidence 3467899999999999999999987654 23344453
No 491
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=91.39 E-value=0.14 Score=46.20 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=19.2
Q ss_pred EEEeccCCCChhHHHHHHHhh
Q 005604 269 MMMVGLPASGKTTWAEKWVKD 289 (688)
Q Consensus 269 IILvGLPGSGKST~Ar~L~~~ 289 (688)
|++.|.||+||||+...|...
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 689999999999999999864
No 492
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.39 E-value=1.7 Score=50.11 Aligned_cols=28 Identities=25% Similarity=0.245 Sum_probs=24.0
Q ss_pred CcceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 264 ~~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
+-..+++++|++|+||||+|+.+++.+.
T Consensus 36 ~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 36 RVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456889999999999999999988764
No 493
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=91.39 E-value=0.15 Score=51.17 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=23.9
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
..+++.++|.+||||||+.+.++..+.
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999999987653
No 494
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=91.38 E-value=0.18 Score=46.82 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=25.5
Q ss_pred EEEeccCCCChhHHHHHHHhhCC--CceEEEEcch
Q 005604 269 MMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (688)
Q Consensus 269 IILvGLPGSGKST~Ar~L~~~~~--~k~~vvIStD 301 (688)
|+++|.+|+||||++..++..+. ++++.+|.+|
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D 36 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDAD 36 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 78999999999999988876543 2346677776
No 495
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.36 E-value=0.16 Score=57.29 Aligned_cols=38 Identities=26% Similarity=0.261 Sum_probs=29.8
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhC----CCceEEEEcchHH
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNLI 303 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~----~~k~~vvIStD~I 303 (688)
..+|+++|++|+||||.+.+|+..+ ..+.+.+|+.|..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 5699999999999999988887543 2345778888864
No 496
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=91.35 E-value=0.18 Score=41.91 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=19.8
Q ss_pred ceEEEEeccCCCChhHHHHHHHh
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVK 288 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~ 288 (688)
..+.+++|..||||||+..++.-
T Consensus 23 g~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999888753
No 497
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.34 E-value=0.16 Score=50.94 Aligned_cols=34 Identities=24% Similarity=0.222 Sum_probs=26.5
Q ss_pred cceEEEEeccCCCChhHHHHHHHhhCC-CceEEEE
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILL 298 (688)
Q Consensus 265 ~~~LIILvGLPGSGKST~Ar~L~~~~~-~k~~vvI 298 (688)
..+++.++|.+||||||+.+.++..+. ..+-+.+
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 60 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 478999999999999999999987643 2333444
No 498
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=91.34 E-value=0.14 Score=48.40 Aligned_cols=21 Identities=19% Similarity=0.468 Sum_probs=18.8
Q ss_pred EEEeccCCCChhHHHHHHHhh
Q 005604 269 MMMVGLPASGKTTWAEKWVKD 289 (688)
Q Consensus 269 IILvGLPGSGKST~Ar~L~~~ 289 (688)
|+++|.+|+||||+++++...
T Consensus 3 i~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678899999999999999754
No 499
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.33 E-value=0.44 Score=51.38 Aligned_cols=86 Identities=20% Similarity=0.139 Sum_probs=46.3
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCCC-ceEEEEcchHHHHHhhcCCccccCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP 344 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~~-k~~vvIStD~Ir~~m~i~G~~r~~~y~~~~e~l~~~a~~~l~~lie~aL~~G 344 (688)
.=||+++|+.||||||-...+....+. +...+|.-.+=.+-+ +-. +...-. ++-+.+-...+...++.||++.
T Consensus 125 ~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~v--h~s--kkslI~--QREvG~dT~sF~~aLraALReD 198 (353)
T COG2805 125 RGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYV--HES--KKSLIN--QREVGRDTLSFANALRAALRED 198 (353)
T ss_pred CceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhh--hcc--hHhhhh--HHHhcccHHHHHHHHHHHhhcC
Confidence 458999999999999987777765542 112233222111110 100 000000 0111111235667788899999
Q ss_pred CeEEEEcCCCCHH
Q 005604 345 RNFIIDQTNVFKS 357 (688)
Q Consensus 345 ~nVILDaTNl~rs 357 (688)
-+|||=.---..+
T Consensus 199 PDVIlvGEmRD~E 211 (353)
T COG2805 199 PDVILVGEMRDLE 211 (353)
T ss_pred CCEEEEeccccHH
Confidence 9999977544433
No 500
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=91.31 E-value=0.14 Score=59.65 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=23.3
Q ss_pred ceEEEEeccCCCChhHHHHHHHhhCC
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ar~L~~~~~ 291 (688)
..+++|+|+||+||||+|+.|++.+.
T Consensus 103 ~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 103 KQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHH
Confidence 46999999999999999999987654
Done!