Query 005604
Match_columns 688
No_of_seqs 314 out of 2154
Neff 5.9
Searched_HMMs 29240
Date Tue Mar 26 18:50:33 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005604.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2107-2111//hhsearch_pdb/005604hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3toj_A SET1/ASH2 histone methy 1.0 1 1 257.9 19.5 176 41-249 10-194 (213)
2 2yyo_A SPRY domain-containing 1.0 1 1 238.9 16.5 160 47-238 3-169 (171)
3 3emw_A SPRY domain-containing 1.0 1 1 175.0 16.0 158 41-231 41-215 (217)
4 2jk9_A SPRY domain-containing 1.0 1 1 172.2 16.5 158 41-231 30-206 (212)
5 2afj_A Gene rich cluster, C9 g 1.0 1 1 164.9 10.1 161 40-233 37-214 (226)
6 3zvl_A Bifunctional polynucleo 1.0 1 1 152.3 12.4 151 262-445 254-413 (416)
7 1ly1_A Polynucleotide kinase; 1.0 1 1 117.5 13.8 140 266-415 2-148 (181)
8 1ltq_A Polynucleotide kinase; 1.0 1 1 115.6 15.1 139 266-414 2-147 (301)
9 3a4m_A L-seryl-tRNA(SEC) kinas 1.0 1 1 113.0 17.8 134 265-415 3-141 (260)
10 2axn_A 6-phosphofructo-2-kinas 1.0 1 1 111.4 16.9 146 264-410 33-191 (520)
No 1
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens}
Probab=1.00 E-value=1 Score=257.88 Aligned_cols=176 Identities=24% Similarity=0.306 Sum_probs=150.5
Q ss_pred CCCEECCCCCCCCCEEECCCCCEEEECCCCCCCCEEEEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 87066186899998599279954860678986301100665256739579999999831788889999999981899772
Q 005604 41 KQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTS 120 (688)
Q Consensus 41 ~~~v~Ls~~d~~~~l~Is~dglsv~~~~~~g~~~~w~~vRAn~gv~~Gk~YfEV~I~~~~~~~~~~t~~~~~g~irVGws 120 (688)
...|+||+.|++.+|.|++|+++++. ..+|++|||++++.+|+|||||+|.... ..++++|||+
T Consensus 10 ~~~v~ld~~d~~~~l~ls~d~l~v~~------~~~~~~vra~~~v~~G~~YfEV~v~~~~----------~~~~~~iG~a 73 (213)
T 3toj_A 10 YERVLLALHDRAPQLKISDDRLTVVG------EKGYSMVRASHGVRKGAWYFEITVDEMP----------PDTAARLGWS 73 (213)
T ss_dssp ECCCCEEEEEECTTSEECTTSSEEEC------CSSCEEEEESCCBSSEEEEEEEEEEECC----------TTCEEEEEEE
T ss_pred CCEEEECHHHCCCCEEECCCCCEEEE------CCCEEEEEECCCCCCCEEEEEEEEEECC----------CCCEEEEEEC
T ss_conf 77079603517898898699848996------8853479958776597499999980058----------8863799733
Q ss_pred CCCCC-CCCCCCCCCCEEEC-CCCCEEECCCCCCCCCCCCCCCEEEEEEECCCC-----CCCEEEEEECCEEEEEEEECC
Q ss_conf 69999-99878899625880-589335398764689998889989999836899-----950799987871222101103
Q 005604 121 RGDDP-VGKLGETEQSFGFG-GTGKFSHGGNFLNFGEKFGVGDTIICAIDLESK-----PLATIGFAKNGKWLGTAKQFD 193 (688)
Q Consensus 121 t~~~~-~~~lG~d~~Sygy~-g~G~~~~~~~~~~yG~~f~~GDVIGc~LDl~~~-----p~~~I~FtkNG~~LG~Af~~~ 193 (688)
+.... ...+|+|.+||||+ .+|+++|++....||++|++||||||+||++.. +.++|+|++||+.||+||+
T Consensus 74 ~~~~~~~~~~G~d~~S~gy~~~~G~~~h~~~~~~yg~~~~~GDvIGc~ld~~~~~~~~~~~g~i~Ft~NG~~lg~aF~-- 151 (213)
T 3toj_A 74 QPLGNLQAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTISGRGSSEIIFYKNGVNQGVAYK-- 151 (213)
T ss_dssp CTTSCTTSCTTSSTTEEEEETTTTCEEETTEEECCSCCCCTTCEEEEEEEECCC-----CCCEEEEEETTEEEEEEEE--
T ss_pred CCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEECCEEEEEEEE--
T ss_conf 577656558878888677888997099399276567777999999999985887666577619999969905313377--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEC-CEEEEEECCCCCCCCCCC-CCHHHHHHC
Q ss_conf 79899642121000023688614389890-859999814789988865-710223210
Q 005604 194 AGSNGLGVVDSAVKERQCESAVFPHILLK-NVVVVMQFSVEQGLIPVE-GYKSWVSAL 249 (688)
Q Consensus 194 ~~~~~L~l~~~dv~gr~~~~~lFPaVsl~-n~~v~vNFG~~~~~~p~~-gf~p~~~a~ 249 (688)
+. ..+.|||+|++. ++++++|||+.+.+.|++ +|+|+.+.+
T Consensus 152 -~~--------------~~~~lyPavsl~~~~~v~~NFG~~F~~~p~~~~~~~~~~~~ 194 (213)
T 3toj_A 152 -DI--------------FEGVYFPAISLYKSCTVSINFGPCFKYPPKDLTYRPMSDMG 194 (213)
T ss_dssp -SC--------------CSSCBEEEEEEESSCEEEEECSSSCSSCCSSCCCEEGGGGG
T ss_pred -CC--------------CCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCEECHHHHC
T ss_conf -48--------------89969999990789999998899986589988617577822
No 2
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=238.87 Aligned_cols=160 Identities=21% Similarity=0.209 Sum_probs=135.3
Q ss_pred CCCCCCCCEEECCCCCEEEECCCCCCCCEEEEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCC-
Q ss_conf 8689999859927995486067898630110066525673957999999983178888999999998189977269999-
Q 005604 47 NPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDP- 125 (688)
Q Consensus 47 s~~d~~~~l~Is~dglsv~~~~~~g~~~~w~~vRAn~gv~~Gk~YfEV~I~~~~~~~~~~t~~~~~g~irVGwst~~~~- 125 (688)
++.|++..|.|+.|.|++++. ...|++||||+++.+|+|||||+|.... ..++++|||++..++
T Consensus 3 s~~dr~~~l~~~~d~l~~~~~-----~~~~~~vra~~p~~~g~~YfEv~i~~~~----------~~~~~~IG~a~~~~~~ 67 (171)
T 2yyo_A 3 SGSSGFKHILVDGDTLSYHGN-----SGEVGCYVASRPLTKDSNYFEVSIVDSG----------VRGTIAVGLVPQYYSL 67 (171)
T ss_dssp ---CEEESEEEETTEEEECCC-----SSCCEEEECSSCCCSSSCEEEEEEEEET----------TTCCCEEEEECTTCCT
T ss_pred CCCCCCCEEEECCCEEEEECC-----CCCEEEEEECCCCCCCCEEEEEEEEECC----------CCCEEEEEECCCCCCC
T ss_conf 754576337985999999688-----8965699979987899789999999789----------8857999842799887
Q ss_pred CCCCCCCCCCEEECC-CCCEEECC-CCCCCCCCCCCCCEEEEEEECCC--CCCCEEEEEECCEEEEEEEECCCCCCCCCC
Q ss_conf 998788996258805-89335398-76468999888998999983689--995079998787122210110379899642
Q 005604 126 VGKLGETEQSFGFGG-TGKFSHGG-NFLNFGEKFGVGDTIICAIDLES--KPLATIGFAKNGKWLGTAKQFDAGSNGLGV 201 (688)
Q Consensus 126 ~~~lG~d~~Sygy~g-~G~~~~~~-~~~~yG~~f~~GDVIGc~LDl~~--~p~~~I~FtkNG~~LG~Af~~~~~~~~L~l 201 (688)
...+|+|.+||||++ +|+++|+. ....||++|++||||||+||+++ ...++|+|||||+.||+||.. .
T Consensus 68 ~~~~G~d~~S~gy~~~dG~~~~~~~~~~~yg~~f~~GDvIGc~id~~~~~~~~~~i~Ft~NG~~lg~af~~---~----- 139 (171)
T 2yyo_A 68 DHQPGWLPDSVAYHADDGKLYNGRAKGRQFGSKCNSGDRIGCGIEPVSFDVQTAQIFFTKNGKRVGSTIMP---M----- 139 (171)
T ss_dssp TSCTTSSTTCEEEETTTCCEESSSSCCBCCSCCCCTTCEEEEEECGGGGSSSCEEEEEEETTEEEEEEEES---S-----
T ss_pred CCCCCCCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEECCEECCCEECC---C-----
T ss_conf 56898568889999499969939998884788877899999999736678883799999899896721318---8-----
Q ss_pred CCCCCCCCCCCCCCEEEEEEC--CEEEEEECCCCCCCCC
Q ss_conf 121000023688614389890--8599998147899888
Q 005604 202 VDSAVKERQCESAVFPHILLK--NVVVVMQFSVEQGLIP 238 (688)
Q Consensus 202 ~~~dv~gr~~~~~lFPaVsl~--n~~v~vNFG~~~~~~p 238 (688)
....|||+|++. ++++++|||+++.++|
T Consensus 140 ---------~~~~lyPaV~l~~~g~~v~vNFG~~~~~pp 169 (171)
T 2yyo_A 140 ---------SPDGLFPAVGMHSLGEEVRLHLNAELSGPS 169 (171)
T ss_dssp ---------CSSSCEEEEEECSTTEEEEEETTCCC----
T ss_pred ---------CCCCEEEEEEEECCCCEEEEECCCCCCCCC
T ss_conf ---------678789999985699899998999876998
No 3
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A
Probab=1.00 E-value=1 Score=175.04 Aligned_cols=158 Identities=24% Similarity=0.415 Sum_probs=129.1
Q ss_pred CCCEECCCCCCCCCEEECCCCCEEEECCCCCCCCEEEEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 87066186899998599279954860678986301100665256739579999999831788889999999981899772
Q 005604 41 KQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTS 120 (688)
Q Consensus 41 ~~~v~Ls~~d~~~~l~Is~dglsv~~~~~~g~~~~w~~vRAn~gv~~Gk~YfEV~I~~~~~~~~~~t~~~~~g~irVGws 120 (688)
...++||+.+++.+|.|++|+++++.... ...|.+|+++.++.+|+|||||+|.... ....++|||+
T Consensus 41 ~~~~tlDp~ta~~~L~lSed~~~v~~~~~---~~~~~~Vl~~~~~~sGrhYWEV~v~~~~----------~g~~~~vGv~ 107 (217)
T 3emw_A 41 QRRHGWNPKDCSENIEVKEGGLYFERRPV---AQSTDGARGKRGYSRGLHAWEISWPLEQ----------RGTHAVVGVA 107 (217)
T ss_dssp HHHTSEEEEEECTTEEEEGGGTEEEECCB---SSCEEEEEESCCBSSSEEEEEEECCGGG----------CTTCCEEEEE
T ss_pred CCCEEECCCCCCCCEEECCCCEEEEECCC---CCCCCEEEECCCCCCCCEEEEEEECCCC----------CCCCEEEEEE
T ss_conf 44037474458998898999839997865---7888879859971586289999980147----------7883067777
Q ss_pred CCCCC------CCCCCCCCCCEEEC-CCCCEEECCCC---CCCC-----CCCCCCCEEEEEEECCCCCCCEEEEEECCEE
Q ss_conf 69999------99878899625880-58933539876---4689-----9988899899998368999507999878712
Q 005604 121 RGDDP------VGKLGETEQSFGFG-GTGKFSHGGNF---LNFG-----EKFGVGDTIICAIDLESKPLATIGFAKNGKW 185 (688)
Q Consensus 121 t~~~~------~~~lG~d~~Sygy~-g~G~~~~~~~~---~~yG-----~~f~~GDVIGc~LDl~~~p~~~I~FtkNG~~ 185 (688)
+.... ...+|++..||+|+ .+|.++|++.. ..|+ +.|..+|+|||+||++. ++|+|++||+.
T Consensus 108 ~~~~~r~~~g~~~~lG~~~~SW~l~~~~g~~~h~~~~~~~~~~~~~~~~~~~~~~d~IGV~LD~~~---G~LsFy~ng~~ 184 (217)
T 3emw_A 108 TALAPLQTDHYAALLGSNSESWGWDIGRGKLYHQSKGPGAPQYPAGTQGEQLEVPERLLVVLDMEE---GTLGYAIGGTY 184 (217)
T ss_dssp CTTSCCEESSSCCCTTSSTTEEEEETTTCBEESSCCSSCCCBSSSSSTTCCCCCCSEEEEEEETTT---TEEEEEETTEE
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC---CEEEEEECCEE
T ss_conf 475554568853424679977999908980980890667743665335667899999999999589---99999999938
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC--CEEEEEECC
Q ss_conf 2210110379899642121000023688614389890--859999814
Q 005604 186 LGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK--NVVVVMQFS 231 (688)
Q Consensus 186 LG~Af~~~~~~~~L~l~~~dv~gr~~~~~lFPaVsl~--n~~v~vNFG 231 (688)
+|.||+. . ...+|||+|++. +++|.+.|-
T Consensus 185 lg~aF~~---~--------------~~~~LyP~~sl~~g~~~v~l~~~ 215 (217)
T 3emw_A 185 LGPAFRG---L--------------KGRTLYPAVSAVWGQCQVRIRYL 215 (217)
T ss_dssp EEEEECC---C--------------TTCCBEEEEEECSTTCEEEEEEE
T ss_pred EEEEEEC---C--------------CCCEEEEEEEECCCCCEEEEEEC
T ss_conf 0787877---9--------------99989989991269838999967
No 4
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A
Probab=1.00 E-value=1 Score=172.20 Aligned_cols=158 Identities=20% Similarity=0.315 Sum_probs=127.7
Q ss_pred CCCEECCCCCCCCCEEECCCC-CEEEECCCCCCCCEEEEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEE
Q ss_conf 870661868999985992799-5486067898630110066525673957999999983178888999999998189977
Q 005604 41 KQRVVLNPADCDLDFDIEDNG-LKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGT 119 (688)
Q Consensus 41 ~~~v~Ls~~d~~~~l~Is~dg-lsv~~~~~~g~~~~w~~vRAn~gv~~Gk~YfEV~I~~~~~~~~~~t~~~~~g~irVGw 119 (688)
...++||+.+++.+|.|++|+ +++.... ....|.+||++.++.+|+|||||+|.... ....++|||
T Consensus 30 ~~~~tldp~ta~~~L~lsed~~~~~~~~~---~~~~~~~Vlg~~~f~sGrhYWEV~v~~~~----------~~~~w~vGV 96 (212)
T 2jk9_A 30 QLLHSWNNNDRSLNVFVKEDDKLIFHRHP---VAQSTDAIRGKVGYTRGLHVWQITWAMRQ----------RGTHAVVGV 96 (212)
T ss_dssp HHHTSEEEEEECTTEEEETTEEEEEEECC---BTTEEEEEEESCCBCSSEEEEEEECCGGG----------CTTCCEEEE
T ss_pred CCCCCCCHHHCCCCEEEECCCEEEEEECC---CCCCCCEEECCCCCCCCEEEEEEEEECCC----------CCCCEEEEE
T ss_conf 26561482216885698079838999798---77762538758774697499999995426----------788579999
Q ss_pred ECCCCC------CCCCCCCCCCEEECC-CCCEEECCCCC---------CCCCCCCCCCEEEEEEECCCCCCCEEEEEECC
Q ss_conf 269999------998788996258805-89335398764---------68999888998999983689995079998787
Q 005604 120 SRGDDP------VGKLGETEQSFGFGG-TGKFSHGGNFL---------NFGEKFGVGDTIICAIDLESKPLATIGFAKNG 183 (688)
Q Consensus 120 st~~~~------~~~lG~d~~Sygy~g-~G~~~~~~~~~---------~yG~~f~~GDVIGc~LDl~~~p~~~I~FtkNG 183 (688)
++.... ...+|.+..||+|+. +|+++|++... .+++.|..+|+|||+||++. ++|+|++||
T Consensus 97 ~~~~~~r~~~g~~~~~G~~~~sw~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~IGv~LD~e~---G~lsFy~ng 173 (212)
T 2jk9_A 97 ATADAPLHSVGYTTLVGNNHESWGWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDMDD---GTLSFIVDG 173 (212)
T ss_dssp ECTTSCCEEESSCCCTTSSTTEEEEETTTTEEEESTTTSCCEESSTTSCTTCCCCCCSEEEEEEETTT---TEEEEEETT
T ss_pred ECCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC---CEEEEEECC
T ss_conf 75775545467656654699768459998828889854676336753456775799999999998999---999999999
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC--CEEEEEECC
Q ss_conf 122210110379899642121000023688614389890--859999814
Q 005604 184 KWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK--NVVVVMQFS 231 (688)
Q Consensus 184 ~~LG~Af~~~~~~~~L~l~~~dv~gr~~~~~lFPaVsl~--n~~v~vNFG 231 (688)
+.++.+|+- . ...+|||++++. +++|.++|-
T Consensus 174 ~~l~~aF~~---~--------------~~~~l~P~f~l~~g~~~v~l~~~ 206 (212)
T 2jk9_A 174 QYMGVAFRG---L--------------KGKKLYPVVSAVWGHCEIRMRYL 206 (212)
T ss_dssp EEEEEEECC---C--------------TTCCBEEEEEECCTTCEEEEEEE
T ss_pred EEEEEEECC---C--------------CCCEEEEEEEEECCCCEEEEEEC
T ss_conf 984787316---9--------------99879639998759958999977
No 5
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22
Probab=1.00 E-value=1 Score=164.85 Aligned_cols=161 Identities=24% Similarity=0.405 Sum_probs=126.7
Q ss_pred CCCCEECCCCCCCCCEEECCCCCEEEECCCCCCCCEEEEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEE
Q ss_conf 98706618689999859927995486067898630110066525673957999999983178888999999998189977
Q 005604 40 QKQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGT 119 (688)
Q Consensus 40 ~~~~v~Ls~~d~~~~l~Is~dglsv~~~~~~g~~~~w~~vRAn~gv~~Gk~YfEV~I~~~~~~~~~~t~~~~~g~irVGw 119 (688)
....++||+.+++.+|.|++|+++++.... ...+.+|+++.++.+|+|||||+|.... ....+.|||
T Consensus 37 ~~~~~tLDp~ta~~~L~lSed~~~v~~~~~---~~~~~~Vlg~~~f~sGrhYWEV~V~~~~----------~~~~w~vGV 103 (226)
T 2afj_A 37 AQRHHGWNPKDCSENIDVKEGGLCFERRPV---AQSTDGVRGKRGYSRGLHAWEISWPLEQ----------RGTHAVVGV 103 (226)
T ss_dssp HHHHHSSCCSSSCCSSEEETTTTEEECSSC---TTTSSSEEECCCCCCSEEEEEEECCCCS----------SSCCCEEEE
T ss_pred CCCCCEECCCCCCCCEEEECCCEEEEECCC---CCCCCEEEECCCCCCCEEEEEEEEECCC----------CCCCEEEEE
T ss_conf 254657860207997799479879997777---8875759989874697799999995127----------888789984
Q ss_pred ECCCCC------CCCCCCCCCCEEEC-CCCCEEECCCC---CCC-----CCCCCCCCEEEEEEECCCCCCCEEEEEECCE
Q ss_conf 269999------99878899625880-58933539876---468-----9998889989999836899950799987871
Q 005604 120 SRGDDP------VGKLGETEQSFGFG-GTGKFSHGGNF---LNF-----GEKFGVGDTIICAIDLESKPLATIGFAKNGK 184 (688)
Q Consensus 120 st~~~~------~~~lG~d~~Sygy~-g~G~~~~~~~~---~~y-----G~~f~~GDVIGc~LDl~~~p~~~I~FtkNG~ 184 (688)
++.... ...+|.+..||+|+ .+|.++|++.. ..| +..|..+|+|||+||++. ++|+|++||+
T Consensus 104 ~~~s~~~~r~~~~~~~G~~~~sw~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~rIGV~LD~e~---G~lSFy~ng~ 180 (226)
T 2afj_A 104 ATALAPLQADHYAALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEE---GTLGYSIGGT 180 (226)
T ss_dssp EESSCCCSSCSSSCCCCCSCEEEEEEGGGTSTTSSSSCCSCSSSSCCSGGGGSCCSSCEEEEEETTT---TEEEEESTTC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC---CEEEEEECCE
T ss_conf 6775663336655534678985789958980998966267610565456776899899999998889---9999999995
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC--CEEEEEECCCC
Q ss_conf 22210110379899642121000023688614389890--85999981478
Q 005604 185 WLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK--NVVVVMQFSVE 233 (688)
Q Consensus 185 ~LG~Af~~~~~~~~L~l~~~dv~gr~~~~~lFPaVsl~--n~~v~vNFG~~ 233 (688)
.++.+|+.. ...+|||++++. ++++.++|-..
T Consensus 181 ~l~~aF~~~-----------------~~~~L~P~f~l~~g~~~v~l~~~~g 214 (226)
T 2afj_A 181 YLGPAFRGL-----------------KGRTLYPSVSAVWGQCQVRIRYMGE 214 (226)
T ss_dssp SCSTTHHHH-----------------HHHCCEEEEEECCTTSCCEEEEESC
T ss_pred EEEEEEECC-----------------CCCEEEEEEECCCCCCEEEEEECCC
T ss_conf 858988768-----------------9987989999026997899998079
No 6
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=1.00 E-value=1 Score=152.25 Aligned_cols=151 Identities=18% Similarity=0.199 Sum_probs=118.8
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88861699995248999118999987538995089990358999740689522587748999999999999999999996
Q 005604 262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS 341 (688)
Q Consensus 262 ~~~e~~LIILvGLPGSGKST~Ak~L~~~~~~k~~viIStD~Ir~el~i~G~~r~~~~~~~~e~l~e~a~~~l~~lie~AL 341 (688)
....+++|+|+|+|||||||+|+.|++.++ +.+|+.|.+. . |..+.+ .+..++
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~~---~~~i~~D~~~------------~----~~~~~~--------~~~~~l 306 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSAG---YVHVNRDTLG------------S----WQRCVS--------SCQAAL 306 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGGGT---CEECCGGGSC------------S----HHHHHH--------HHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCC---CEEECCCHHH------------H----HHHHHH--------HHHHHH
T ss_conf 789987999989999998999999998659---6898661399------------9----999999--------999998
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCC-CEEEEEECCH-HHHHHHHHHHHCCCC--CCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 59990999757879999999999995179-7899993999-999999997110279--9991999996660644688889
Q 005604 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMG--KEVPADAVNNMLANYVLPVNKD 417 (688)
Q Consensus 342 ~~Gr~VILDaTNl~~~~R~r~l~~fa~~~-~v~iV~l~~p-Eel~~R~~kR~~~~g--~~VPeevI~~m~~~fE~P~~~~ 417 (688)
..|++||+|+||.....|..+++.++..+ .+.+|+|+++ ++|++|+.+|..+.. ..++++++.++.+.||.|..
T Consensus 307 ~~g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~~~~~~~~~~~~~~~~~~~~~e~P~~-- 384 (416)
T 3zvl_A 307 RQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMVMFSYRKQFEPPTL-- 384 (416)
T ss_dssp HTTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHCCCCCG--
T ss_pred HCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCC--
T ss_conf 669928981887999999999999997598299999929999999999850146887678889999999974489993--
Q ss_pred CCCCCCCCCEEEEECCC-----HHHHHHHHHHH
Q ss_conf 99998887679981438-----79999999998
Q 005604 418 TPGSDELFDQVMFVELD-----REEAQRHLDEM 445 (688)
Q Consensus 418 ~~~~~EgFdeV~~~el~-----~~ea~~ii~~~ 445 (688)
.|+|+.|+.++.. .++.++++++|
T Consensus 385 ----~E~fd~v~~v~~~~~~f~~~~~~~l~~~~ 413 (416)
T 3zvl_A 385 ----AEGFLEILEIPFRLQEHLDPALQRLYRQF 413 (416)
T ss_dssp ----GGTCSEEEEECCCCCTTCCHHHHHHHTSC
T ss_pred ----CCCCCEEEEEECCCCCCCCHHHHHHHHHH
T ss_conf ----13875799982653334477899999986
No 7
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=1.00 E-value=1 Score=117.52 Aligned_cols=140 Identities=20% Similarity=0.303 Sum_probs=100.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHH-HCCCCEEEEECCHHHHHHHHCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_conf 16999952489991189999875-38995089990358999740689522-587748999999999999999999996--
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVK-DHPEKRYILLGTNLILEQMKVPGLLR-KHNYSERFQCLMGRANAIFDVLLSRAS-- 341 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ak~L~~-~~~~k~~viIStD~Ir~el~i~G~~r-~~~~~~~~e~l~e~a~~~l~~lie~AL-- 341 (688)
+.+|+++|+|||||||+|+.|.+ ..+ +.+|++|.++..+.. .... ...+....+... ...+...+..++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~---~~~i~~d~~r~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~ 74 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPG---FYNINRDDYRQSIMA-HEERDEYKYTKKKEGIV---TGMQFDTAKSILYG 74 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTT---EEEECHHHHHHHHTT-SCCGGGCCCCHHHHHHH---HHHHHHHHHHHHTS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC---CEEECHHHHHHHHHC-CCCCCHHHHCHHHHHHH---HHHHHHHHHHHHHH
T ss_conf 758999669999999999999862389---588668899998607-99640232040455689---99999999999740
Q ss_pred -CCCCEEEEECCCCCHHHHHHHHHHHHCCC-CEEEEEECCH-HHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCC
Q ss_conf -59990999757879999999999995179-7899993999-99999999711027999919999966606446888
Q 005604 342 -RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVN 415 (688)
Q Consensus 342 -~~Gr~VILDaTNl~~~~R~r~l~~fa~~~-~v~iV~l~~p-Eel~~R~~kR~~~~g~~VPeevI~~m~~~fE~P~~ 415 (688)
..|..||+|.++.....|..+.+.+...+ ...+|++.++ +++++|+.+|. .+.++++++.++.+.|+.|..
T Consensus 75 ~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~---~~~~~~~~i~~~~~~~~~~~~ 148 (181)
T 1ly1_A 75 GDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRG---TKAVPIDVLRSMYKSMREYLG 148 (181)
T ss_dssp CSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCG---GGCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCC---CCCCCHHHHHHHHHHHHCCCC
T ss_conf 25898499939999999999999999982998899998589999999986566---689999999999998631678
No 8
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=1.00 E-value=1 Score=115.64 Aligned_cols=139 Identities=20% Similarity=0.308 Sum_probs=99.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_conf 16999952489991189999875389950899903589997406--89522587748999999999999999999996--
Q 005604 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKV--PGLLRKHNYSERFQCLMGRANAIFDVLLSRAS-- 341 (688)
Q Consensus 266 ~~LIILvGLPGSGKST~Ak~L~~~~~~k~~viIStD~Ir~el~i--~G~~r~~~~~~~~e~l~e~a~~~l~~lie~AL-- 341 (688)
+.+|+++|+|||||||+|+.|.+.+. .+.+|+.|.+|..+.. .|.. ..+....+... ...+...+..++
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~--~~~~i~~D~~r~~~~~~~~g~~--~~~~~~~~~~~---~~~~~~~~~~~l~~ 74 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNP--GFYNINRDDYRQSIMAHEERDE--YKYTKKKEGIV---TGMQFDTAKSILYG 74 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHST--TEEEECHHHHHHHHTTSCCCC-----CCHHHHHHH---HHHHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC--CCEEECCCHHHHHHCCCCCCCC--CCCCHHHHHHH---HHHHHHHHHHHHHH
T ss_conf 86999977999999999999997579--9689566289998326784431--12111345689---99999999999752
Q ss_pred -CCCCEEEEECCCCCHHHHHHHHHHHHCCC-CEEEEEECCH-HHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf -59990999757879999999999995179-7899993999-9999999971102799991999996660644688
Q 005604 342 -RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPV 414 (688)
Q Consensus 342 -~~Gr~VILDaTNl~~~~R~r~l~~fa~~~-~v~iV~l~~p-Eel~~R~~kR~~~~g~~VPeevI~~m~~~fE~P~ 414 (688)
..|..||+|.++.....|..+.+.+...+ ...+|++.++ +++++|+.+|. .+.+++++|.++.+.|+.+.
T Consensus 75 ~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~---~~~~~~e~i~~~~~~~~~~~ 147 (301)
T 1ltq_A 75 GDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRG---TKAVPIDVLRSMYKSMREYL 147 (301)
T ss_dssp CTTCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCG---GGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCC---CCCCCHHHHHHHHHHHHCCC
T ss_conf 24798799939999999999999999975996899999799999999998516---77898999999999874146
No 9
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=1.00 E-value=1 Score=112.97 Aligned_cols=134 Identities=24% Similarity=0.494 Sum_probs=95.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHH---CCCCEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6169999524899911899998753---8995089990358999740689522587748999999999999999999996
Q 005604 265 DCEVMMMVGLPASGKTTWAEKWVKD---HPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS 341 (688)
Q Consensus 265 e~~LIILvGLPGSGKST~Ak~L~~~---~~~k~~viIStD~Ir~el~i~G~~r~~~~~~~~e~l~e~a~~~l~~lie~AL 341 (688)
.+.+|+++|+|||||||+|+.|.+. .+ ..+++++.|.++..+ .+ +....+.....+ ....++.++
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g-~~~i~~~~D~~~~~l--~~------~~~~~e~~~~~~---~~~~i~~~l 70 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNN-IDVIVLGSDLIRESF--PV------WKEKYEEFIKKS---TYRLIDSAL 70 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEECTHHHHTTS--SS------CCGGGHHHHHHH---HHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCC-CEEEEECCHHHHHHH--HH------HHHHHHHHHHHH---HHHHHHHHH
T ss_conf 877999975899989999999999998679-879997722777888--65------517778999999---999999973
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCC-CEEEEEECCH-HHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 59990999757879999999999995179-7899993999-99999999711027999919999966606446888
Q 005604 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVN 415 (688)
Q Consensus 342 ~~Gr~VILDaTNl~~~~R~r~l~~fa~~~-~v~iV~l~~p-Eel~~R~~kR~~~~g~~VPeevI~~m~~~fE~P~~ 415 (688)
+. ..||+|.++.....|..+.+.+.... ..++|+|.++ +++++|+.+| ++.++++.+.++.+.|+.|..
T Consensus 71 ~~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R----~~~~~~~~l~~~~~~~e~~~~ 141 (260)
T 3a4m_A 71 KN-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIER----GEKIPNEVIKKMYEKFDEPGK 141 (260)
T ss_dssp TT-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHT----TCSSCHHHHHHHHHHCCCTTS
T ss_pred HC-CEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHC----CCCCCHHHHHHHHHHHCCCCC
T ss_conf 27-879996886538999999999998399879999829999999999858----898999999999998657666
No 10
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=1.00 E-value=1 Score=111.35 Aligned_cols=146 Identities=16% Similarity=0.058 Sum_probs=88.3
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHCCCCCCCC--CCHHHHHHH-HHHHHHHHHHHHH
Q ss_conf 8616999952489991189999875389--9508999035899974068952258--774899999-9999999999999
Q 005604 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKH--NYSERFQCL-MGRANAIFDVLLS 338 (688)
Q Consensus 264 ~e~~LIILvGLPGSGKST~Ak~L~~~~~--~k~~viIStD~Ir~el~i~G~~r~~--~~~~~~e~l-~e~a~~~l~~lie 338 (688)
..+.+|+|+|+|||||||+|++|++.++ .....+|+.|++|+++......... ......... .+.+..++..+.
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~- 111 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVK- 111 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH-
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-
T ss_conf 9986999989999988999999999986569872896520888876057766455586557789999999999999999-
Q ss_pred HHH--CCCCEEEEECCCCCHHHHHHHHHHHHCCC-CEEEEEECC--HHHHHHHHHHHHCCCC---CCCCHHHHHHHHCCC
Q ss_conf 996--59990999757879999999999995179-789999399--9999999997110279---999199999666064
Q 005604 339 RAS--RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPK--PEDLKIRSVKRFKEMG---KEVPADAVNNMLANY 410 (688)
Q Consensus 339 ~AL--~~Gr~VILDaTNl~~~~R~r~l~~fa~~~-~v~iV~l~~--pEel~~R~~kR~~~~g---~~VPeevI~~m~~~f 410 (688)
..+ ..|..||+|+||..+..|..+++.++..+ .+.++++.+ ++.+.+|+.+|..... ...+++++..+.+++
T Consensus 112 ~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~~~rPdl~~~d~e~~~~~~~~Ri 191 (520)
T 2axn_A 112 SYLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKISSPDYKDCNSAEAMDDFMKRI 191 (520)
T ss_dssp HHHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHTTTSGGGTTSCHHHHHHHHHHHH
T ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99986589459964778989999999999997499089999858829999999986400688535678778899999988
Done!