Query 005605
Match_columns 688
No_of_seqs 465 out of 3763
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 02:03:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005605.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005605hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0922 DEAH-box RNA helicase 100.0 7E-145 2E-149 1158.9 51.5 615 54-688 39-657 (674)
2 KOG0925 mRNA splicing factor A 100.0 6E-144 1E-148 1101.2 52.6 633 43-688 24-657 (699)
3 KOG0924 mRNA splicing factor A 100.0 6E-142 1E-146 1120.6 41.3 613 58-688 348-963 (1042)
4 KOG0923 mRNA splicing factor A 100.0 8E-140 2E-144 1104.2 48.8 618 55-688 254-873 (902)
5 PRK11131 ATP-dependent RNA hel 100.0 1E-117 3E-122 1037.4 54.2 601 60-688 68-687 (1294)
6 TIGR01967 DEAH_box_HrpA ATP-de 100.0 2E-113 4E-118 1007.0 54.5 601 60-688 61-677 (1283)
7 COG1643 HrpA HrpA-like helicas 100.0 4E-113 9E-118 968.9 44.6 625 45-688 29-701 (845)
8 KOG0920 ATP-dependent RNA heli 100.0 7E-112 2E-116 952.6 42.4 628 45-686 152-837 (924)
9 KOG0926 DEAH-box RNA helicase 100.0 1E-108 2E-113 881.6 42.7 625 55-688 245-1013(1172)
10 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2.6E-92 5.7E-97 813.1 50.4 562 65-688 1-568 (819)
11 PRK11664 ATP-dependent RNA hel 100.0 4.1E-92 8.8E-97 813.7 49.3 554 63-688 2-561 (812)
12 KOG0921 Dosage compensation co 100.0 1.4E-64 2.9E-69 547.6 24.2 619 52-685 364-1060(1282)
13 PHA02653 RNA helicase NPH-II; 100.0 6.6E-60 1.4E-64 532.5 28.2 396 69-510 167-594 (675)
14 KOG0330 ATP-dependent RNA heli 100.0 6.4E-52 1.4E-56 416.0 15.3 344 39-422 56-410 (476)
15 KOG0331 ATP-dependent RNA heli 100.0 3.7E-49 8E-54 422.2 21.4 344 44-423 91-452 (519)
16 COG0513 SrmB Superfamily II DN 100.0 8E-47 1.7E-51 421.1 22.8 338 44-419 29-380 (513)
17 KOG0328 Predicted ATP-dependen 100.0 2.2E-45 4.7E-50 354.1 20.2 342 43-423 26-377 (400)
18 KOG0333 U5 snRNP-like RNA heli 100.0 1.2E-45 2.6E-50 382.6 18.1 366 15-420 217-625 (673)
19 KOG0338 ATP-dependent RNA heli 100.0 2.1E-45 4.5E-50 379.3 13.9 341 43-422 180-536 (691)
20 KOG0343 RNA Helicase [RNA proc 100.0 1.5E-44 3.2E-49 376.1 16.6 343 41-421 66-424 (758)
21 PRK11776 ATP-dependent RNA hel 100.0 1.1E-43 2.4E-48 395.0 22.9 339 44-422 4-352 (460)
22 PTZ00110 helicase; Provisional 100.0 1.1E-43 2.4E-48 399.5 22.4 348 38-422 124-487 (545)
23 KOG0345 ATP-dependent RNA heli 100.0 8E-44 1.7E-48 365.4 18.6 357 45-438 5-385 (567)
24 KOG0340 ATP-dependent RNA heli 100.0 6.4E-44 1.4E-48 354.5 16.5 339 41-422 4-364 (442)
25 PRK04837 ATP-dependent RNA hel 100.0 6.9E-43 1.5E-47 384.5 21.2 340 42-421 6-364 (423)
26 KOG0326 ATP-dependent RNA heli 100.0 3.8E-43 8.1E-48 343.8 15.7 367 16-423 57-433 (459)
27 KOG0342 ATP-dependent RNA heli 100.0 1.5E-42 3.3E-47 358.6 19.3 341 43-421 81-439 (543)
28 PRK11634 ATP-dependent RNA hel 100.0 5.7E-42 1.2E-46 389.0 24.3 338 44-421 6-354 (629)
29 PLN00206 DEAD-box ATP-dependen 100.0 8.2E-42 1.8E-46 383.3 24.3 348 38-422 115-478 (518)
30 PRK01172 ski2-like helicase; P 100.0 7.5E-41 1.6E-45 388.3 32.3 518 45-598 2-580 (674)
31 PRK10590 ATP-dependent RNA hel 100.0 1.1E-41 2.4E-46 377.6 22.3 339 45-422 2-355 (456)
32 PRK04537 ATP-dependent RNA hel 100.0 1.2E-41 2.5E-46 384.4 22.5 338 44-421 9-366 (572)
33 KOG0348 ATP-dependent RNA heli 100.0 9.6E-42 2.1E-46 354.1 19.2 361 37-423 129-560 (708)
34 KOG0339 ATP-dependent RNA heli 100.0 1.3E-41 2.8E-46 350.7 16.5 347 38-422 217-578 (731)
35 PRK11192 ATP-dependent RNA hel 100.0 6.4E-41 1.4E-45 370.5 23.0 340 45-423 2-356 (434)
36 PRK02362 ski2-like helicase; P 100.0 6.6E-40 1.4E-44 383.0 32.2 527 45-601 2-623 (737)
37 PRK01297 ATP-dependent RNA hel 100.0 5.2E-40 1.1E-44 366.6 23.5 339 43-421 86-444 (475)
38 KOG0341 DEAD-box protein abstr 100.0 2.7E-41 5.9E-46 338.0 10.6 347 38-423 164-532 (610)
39 KOG0336 ATP-dependent RNA heli 100.0 1.9E-40 4.2E-45 334.0 15.1 344 39-423 214-576 (629)
40 PTZ00424 helicase 45; Provisio 100.0 1.6E-39 3.4E-44 356.3 23.1 342 43-423 27-378 (401)
41 KOG0335 ATP-dependent RNA heli 100.0 2.2E-40 4.7E-45 348.8 12.8 346 38-418 68-443 (482)
42 KOG0332 ATP-dependent RNA heli 100.0 1.4E-39 3E-44 325.3 15.7 342 42-420 88-444 (477)
43 KOG0347 RNA helicase [RNA proc 100.0 1.5E-39 3.2E-44 338.9 12.1 342 43-422 180-573 (731)
44 PRK00254 ski2-like helicase; P 100.0 4.8E-37 1E-41 358.1 29.8 523 45-601 2-614 (720)
45 TIGR03817 DECH_helic helicase/ 100.0 2.7E-37 5.8E-42 357.5 24.6 337 50-418 20-385 (742)
46 KOG0346 RNA helicase [RNA proc 100.0 1.3E-37 2.8E-42 317.0 16.8 342 41-422 16-413 (569)
47 KOG0327 Translation initiation 100.0 2.2E-36 4.9E-41 305.5 14.6 343 38-423 20-374 (397)
48 KOG0334 RNA helicase [RNA proc 100.0 2.9E-36 6.3E-41 338.0 15.2 347 37-421 358-722 (997)
49 KOG0350 DEAD-box ATP-dependent 100.0 2.2E-35 4.8E-40 305.0 17.5 349 39-422 122-543 (620)
50 TIGR00614 recQ_fam ATP-depende 100.0 7E-34 1.5E-38 316.2 21.4 314 61-423 6-337 (470)
51 PLN03137 ATP-dependent DNA hel 100.0 8.6E-34 1.9E-38 326.0 22.3 325 49-422 442-790 (1195)
52 PRK11057 ATP-dependent DNA hel 100.0 9E-34 2E-38 323.5 21.6 324 50-423 8-347 (607)
53 KOG4284 DEAD box protein [Tran 100.0 5.8E-34 1.3E-38 301.3 16.9 342 43-420 24-380 (980)
54 TIGR02621 cas3_GSU0051 CRISPR- 100.0 2.8E-33 6.1E-38 317.9 23.1 347 62-450 12-422 (844)
55 KOG0344 ATP-dependent RNA heli 100.0 5.5E-34 1.2E-38 301.9 15.8 349 37-423 125-499 (593)
56 KOG0337 ATP-dependent RNA heli 100.0 6.7E-34 1.5E-38 288.7 11.2 340 44-421 21-370 (529)
57 PRK13767 ATP-dependent helicas 100.0 2.9E-31 6.4E-36 313.2 24.7 334 51-416 18-397 (876)
58 COG1202 Superfamily II helicas 100.0 4.1E-30 8.9E-35 269.7 26.6 448 44-534 194-688 (830)
59 TIGR01389 recQ ATP-dependent D 100.0 9.9E-31 2.1E-35 299.3 22.9 310 62-422 9-334 (591)
60 TIGR00580 mfd transcription-re 100.0 6.4E-30 1.4E-34 298.8 21.5 315 53-419 438-770 (926)
61 COG1201 Lhr Lhr-like helicases 100.0 1.2E-28 2.6E-33 278.8 24.3 387 51-476 8-438 (814)
62 PRK10689 transcription-repair 100.0 2.9E-29 6.3E-34 299.3 19.8 309 53-418 588-918 (1147)
63 PRK10917 ATP-dependent DNA hel 100.0 9E-29 1.9E-33 285.5 21.9 312 55-417 250-587 (681)
64 TIGR00643 recG ATP-dependent D 100.0 1.7E-28 3.6E-33 281.5 19.7 315 54-417 224-564 (630)
65 TIGR01587 cas3_core CRISPR-ass 100.0 8E-28 1.7E-32 259.6 19.8 292 83-420 1-337 (358)
66 PRK09751 putative ATP-dependen 100.0 5.4E-28 1.2E-32 289.6 19.1 298 86-413 1-379 (1490)
67 COG1204 Superfamily II helicas 100.0 1.3E-26 2.9E-31 265.7 27.8 519 48-595 13-630 (766)
68 TIGR03158 cas3_cyano CRISPR-as 99.9 1.1E-26 2.3E-31 249.0 22.1 288 70-405 1-357 (357)
69 COG0514 RecQ Superfamily II DN 99.9 9.7E-27 2.1E-31 254.5 15.4 310 63-422 14-340 (590)
70 PRK09401 reverse gyrase; Revie 99.9 8.3E-27 1.8E-31 278.9 15.7 301 58-405 72-429 (1176)
71 KOG0329 ATP-dependent RNA heli 99.9 9.8E-26 2.1E-30 215.3 12.9 306 43-423 41-359 (387)
72 PRK12898 secA preprotein trans 99.9 2.4E-24 5.2E-29 240.3 21.1 123 261-421 457-588 (656)
73 PRK14701 reverse gyrase; Provi 99.9 3.7E-25 7.9E-30 270.0 14.7 325 55-419 68-456 (1638)
74 KOG0349 Putative DEAD-box RNA 99.9 1.4E-25 3.1E-30 228.1 9.2 227 160-417 338-613 (725)
75 COG1205 Distinct helicase fami 99.9 2.7E-24 5.9E-29 250.1 20.4 332 53-417 57-420 (851)
76 COG1111 MPH1 ERCC4-like helica 99.9 6.2E-24 1.3E-28 222.6 18.5 318 64-419 13-481 (542)
77 PHA02558 uvsW UvsW helicase; P 99.9 1.1E-23 2.5E-28 235.7 20.7 296 64-411 112-443 (501)
78 PRK13766 Hef nuclease; Provisi 99.9 9.6E-24 2.1E-28 249.8 20.3 317 63-421 12-481 (773)
79 TIGR01054 rgy reverse gyrase. 99.9 1E-23 2.2E-28 252.8 18.5 289 55-377 67-412 (1171)
80 PRK09200 preprotein translocas 99.9 3.2E-23 7E-28 236.1 20.7 314 64-421 76-543 (790)
81 TIGR03714 secA2 accessory Sec 99.9 1.6E-22 3.4E-27 228.4 21.2 121 262-421 409-539 (762)
82 KOG0354 DEAD-box like helicase 99.9 1.1E-22 2.3E-27 225.3 18.4 324 63-420 59-530 (746)
83 TIGR00963 secA preprotein tran 99.9 4.7E-22 1E-26 223.1 19.5 313 64-421 54-519 (745)
84 PRK09694 helicase Cas3; Provis 99.9 3.6E-21 7.7E-26 223.3 22.3 303 65-407 285-662 (878)
85 PRK05580 primosome assembly pr 99.9 1.2E-20 2.6E-25 217.4 19.9 309 66-414 144-544 (679)
86 KOG0921 Dosage compensation co 99.8 1.7E-22 3.6E-27 221.3 2.5 450 61-533 401-897 (1282)
87 COG4098 comFA Superfamily II D 99.8 1E-19 2.2E-24 181.7 21.2 305 59-416 92-413 (441)
88 KOG0952 DNA/RNA helicase MER3/ 99.8 8.9E-20 1.9E-24 204.1 22.9 482 63-563 107-682 (1230)
89 TIGR00603 rad25 DNA repair hel 99.8 9.2E-20 2E-24 206.1 20.5 301 65-423 254-611 (732)
90 KOG0351 ATP-dependent DNA heli 99.8 3E-20 6.4E-25 215.0 15.8 318 59-423 257-596 (941)
91 KOG0352 ATP-dependent DNA heli 99.8 5.6E-20 1.2E-24 187.6 12.7 310 69-423 23-366 (641)
92 TIGR00595 priA primosomal prot 99.8 9.8E-20 2.1E-24 202.6 12.7 290 86-413 2-375 (505)
93 KOG0951 RNA helicase BRR2, DEA 99.8 1.1E-17 2.3E-22 189.7 22.7 435 51-504 296-824 (1674)
94 PF04408 HA2: Helicase associa 99.8 4.8E-19 1E-23 154.4 6.3 91 469-559 1-102 (102)
95 PRK04914 ATP-dependent helicas 99.8 1E-17 2.2E-22 195.9 18.7 120 269-419 483-605 (956)
96 PF07717 OB_NTP_bind: Oligonuc 99.8 9.7E-19 2.1E-23 156.3 6.9 96 593-688 1-106 (114)
97 PRK12906 secA preprotein trans 99.7 2.7E-17 5.8E-22 186.6 17.7 108 278-421 439-555 (796)
98 KOG0353 ATP-dependent DNA heli 99.7 9.4E-17 2E-21 161.6 18.2 325 47-421 74-469 (695)
99 PRK11448 hsdR type I restricti 99.7 3E-16 6.6E-21 187.6 21.2 320 66-417 413-813 (1123)
100 COG4581 Superfamily II RNA hel 99.7 2.9E-16 6.2E-21 181.1 18.2 325 66-418 119-536 (1041)
101 KOG0948 Nuclear exosomal RNA h 99.7 1.1E-16 2.4E-21 173.5 12.2 321 66-419 129-539 (1041)
102 smart00847 HA2 Helicase associ 99.7 4.8E-17 1E-21 139.4 7.2 90 469-559 1-92 (92)
103 PRK13104 secA preprotein trans 99.7 1.2E-15 2.6E-20 174.1 19.2 120 263-420 430-588 (896)
104 COG1061 SSL2 DNA or RNA helica 99.7 2E-15 4.3E-20 166.2 18.3 288 63-407 33-376 (442)
105 COG1200 RecG RecG-like helicas 99.7 1.2E-15 2.6E-20 167.3 15.9 306 65-420 261-592 (677)
106 PRK12904 preprotein translocas 99.6 2.2E-15 4.8E-20 171.8 17.4 121 262-420 415-574 (830)
107 cd00268 DEADc DEAD-box helicas 99.6 8.3E-16 1.8E-20 152.2 11.5 193 46-240 1-200 (203)
108 COG1203 CRISPR-associated heli 99.6 7E-15 1.5E-19 171.3 19.5 309 66-418 195-549 (733)
109 KOG0950 DNA polymerase theta/e 99.6 3.3E-15 7.1E-20 167.4 15.8 337 52-421 208-613 (1008)
110 KOG0947 Cytoplasmic exosomal R 99.6 5.7E-15 1.2E-19 164.2 16.2 321 65-419 296-723 (1248)
111 TIGR00631 uvrb excinuclease AB 99.6 4.5E-15 9.7E-20 169.4 14.8 128 262-420 427-554 (655)
112 PRK05298 excinuclease ABC subu 99.6 1.9E-14 4.1E-19 165.4 14.9 125 263-418 432-556 (652)
113 COG1197 Mfd Transcription-repa 99.6 1.1E-13 2.3E-18 160.2 19.0 296 68-420 596-914 (1139)
114 PRK12899 secA preprotein trans 99.5 2.2E-13 4.9E-18 155.4 19.1 144 47-194 65-225 (970)
115 PRK13107 preprotein translocas 99.5 3.7E-13 8.1E-18 153.5 18.8 121 263-421 435-593 (908)
116 cd00079 HELICc Helicase superf 99.5 7.5E-14 1.6E-18 127.4 10.0 104 278-415 27-131 (131)
117 COG1116 TauB ABC-type nitrate/ 99.5 6.7E-14 1.4E-18 137.3 8.8 148 77-233 25-199 (248)
118 PRK12900 secA preprotein trans 99.5 1.6E-13 3.5E-18 157.0 11.4 162 218-421 535-713 (1025)
119 PF00270 DEAD: DEAD/DEAH box h 99.5 1E-13 2.2E-18 132.8 7.3 154 68-227 1-163 (169)
120 COG1126 GlnQ ABC-type polar am 99.5 1.2E-13 2.6E-18 131.6 7.6 161 77-245 24-218 (240)
121 KOG4150 Predicted ATP-dependen 99.5 8.3E-13 1.8E-17 139.6 14.3 316 56-413 276-634 (1034)
122 COG1136 SalX ABC-type antimicr 99.4 1.7E-13 3.8E-18 134.3 8.3 152 77-234 27-211 (226)
123 PF00271 Helicase_C: Helicase 99.4 1E-13 2.3E-18 114.8 3.7 71 312-407 7-77 (78)
124 COG1135 AbcC ABC-type metal io 99.4 2.6E-13 5.7E-18 135.9 6.9 152 77-235 28-212 (339)
125 COG1121 ZnuC ABC-type Mn/Zn tr 99.4 5.5E-13 1.2E-17 132.7 8.4 142 78-227 27-200 (254)
126 COG1120 FepC ABC-type cobalami 99.4 3.5E-13 7.6E-18 134.8 6.2 157 78-235 25-209 (258)
127 COG1117 PstB ABC-type phosphat 99.4 1E-12 2.2E-17 124.7 6.8 162 77-242 29-228 (253)
128 COG1124 DppF ABC-type dipeptid 99.3 2.8E-12 6E-17 124.8 8.3 152 78-235 30-212 (252)
129 COG3839 MalK ABC-type sugar tr 99.3 1.9E-12 4.2E-17 134.5 7.3 157 77-234 25-203 (338)
130 COG3638 ABC-type phosphate/pho 99.3 5.7E-12 1.2E-16 121.8 6.2 150 78-234 27-217 (258)
131 COG4525 TauB ABC-type taurine 99.3 9.6E-12 2.1E-16 116.3 7.4 146 77-231 27-198 (259)
132 COG1127 Ttg2A ABC-type transpo 99.3 9.1E-12 2E-16 120.8 6.9 153 77-235 30-216 (263)
133 smart00490 HELICc helicase sup 99.2 7E-12 1.5E-16 104.2 4.8 71 312-407 11-81 (82)
134 COG1125 OpuBA ABC-type proline 99.2 5.6E-12 1.2E-16 122.7 4.6 153 77-234 23-205 (309)
135 COG2884 FtsE Predicted ATPase 99.2 1.4E-11 3.1E-16 115.0 7.0 143 77-227 24-198 (223)
136 COG1110 Reverse gyrase [DNA re 99.2 5.2E-10 1.1E-14 126.9 20.8 280 59-376 75-419 (1187)
137 COG3842 PotA ABC-type spermidi 99.2 1.2E-11 2.5E-16 129.5 6.1 151 77-234 27-206 (352)
138 TIGR02314 ABC_MetN D-methionin 99.2 2.9E-11 6.2E-16 128.5 9.0 150 78-234 28-210 (343)
139 TIGR01186 proV glycine betaine 99.2 3E-11 6.5E-16 129.1 8.8 150 78-234 16-199 (363)
140 PRK11650 ugpC glycerol-3-phosp 99.2 3.1E-11 6.6E-16 129.3 8.6 150 78-234 27-204 (356)
141 COG1131 CcmA ABC-type multidru 99.2 2.7E-11 5.8E-16 126.3 7.9 150 78-234 28-206 (293)
142 PRK11432 fbpC ferric transport 99.2 3.5E-11 7.5E-16 128.5 8.6 150 78-234 29-206 (351)
143 COG1122 CbiO ABC-type cobalt t 99.2 2E-11 4.4E-16 122.1 6.2 150 78-234 27-208 (235)
144 TIGR01407 dinG_rel DnaQ family 99.2 1.6E-09 3.6E-14 129.1 23.1 140 260-415 656-811 (850)
145 TIGR03265 PhnT2 putative 2-ami 99.2 4.5E-11 9.7E-16 127.9 8.7 150 78-234 27-204 (353)
146 TIGR00960 3a0501s02 Type II (G 99.2 4E-11 8.6E-16 119.9 7.6 148 78-233 26-206 (216)
147 PRK09452 potA putrescine/sperm 99.2 4.5E-11 9.8E-16 128.5 8.5 156 78-234 37-214 (375)
148 COG3840 ThiQ ABC-type thiamine 99.2 3.8E-11 8.3E-16 111.2 6.3 149 78-233 22-198 (231)
149 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.2 5.9E-11 1.3E-15 118.9 8.3 154 78-232 27-207 (218)
150 PRK11607 potG putrescine trans 99.2 5.9E-11 1.3E-15 127.8 8.8 150 78-234 42-219 (377)
151 cd03226 ABC_cobalt_CbiO_domain 99.2 4.9E-11 1.1E-15 118.3 7.5 148 78-233 23-194 (205)
152 PRK13537 nodulation ABC transp 99.2 5.3E-11 1.1E-15 125.2 8.1 156 78-235 30-208 (306)
153 cd03261 ABC_Org_Solvent_Resist 99.2 6E-11 1.3E-15 120.3 8.1 150 78-234 23-206 (235)
154 cd03259 ABC_Carb_Solutes_like 99.2 6.7E-11 1.4E-15 118.0 8.2 149 78-233 23-199 (213)
155 cd03293 ABC_NrtD_SsuB_transpor 99.2 8E-11 1.7E-15 118.1 8.5 147 78-233 27-200 (220)
156 cd03298 ABC_ThiQ_thiamine_tran 99.2 7.9E-11 1.7E-15 117.3 8.4 157 77-234 20-198 (211)
157 COG1118 CysA ABC-type sulfate/ 99.1 3.8E-11 8.1E-16 120.3 5.8 157 77-234 24-207 (345)
158 PRK11000 maltose/maltodextrin 99.1 7.3E-11 1.6E-15 127.2 8.5 150 78-234 26-203 (369)
159 PRK10851 sulfate/thiosulfate t 99.1 8.1E-11 1.8E-15 125.9 8.7 156 78-234 25-206 (353)
160 cd03230 ABC_DR_subfamily_A Thi 99.1 1.3E-10 2.7E-15 112.0 9.2 59 167-227 96-156 (173)
161 cd03256 ABC_PhnC_transporter A 99.1 8E-11 1.7E-15 119.8 8.2 156 78-234 24-214 (241)
162 TIGR02673 FtsE cell division A 99.1 8.6E-11 1.9E-15 117.3 8.2 149 78-234 25-206 (214)
163 PRK13536 nodulation factor exp 99.1 9.7E-11 2.1E-15 124.6 8.5 156 78-235 64-242 (340)
164 COG1198 PriA Primosomal protei 99.1 1.1E-09 2.4E-14 124.6 17.2 302 65-414 197-598 (730)
165 PRK11153 metN DL-methionine tr 99.1 1.1E-10 2.4E-15 124.7 8.6 150 78-234 28-210 (343)
166 TIGR01188 drrA daunorubicin re 99.1 7.9E-11 1.7E-15 123.9 7.3 149 78-234 16-193 (302)
167 PRK10070 glycine betaine trans 99.1 1.1E-10 2.5E-15 126.1 8.7 150 78-234 51-234 (400)
168 TIGR02315 ABC_phnC phosphonate 99.1 1E-10 2.2E-15 119.2 7.5 149 78-233 25-214 (243)
169 COG0411 LivG ABC-type branched 99.1 1.2E-10 2.7E-15 113.5 7.6 156 78-234 27-219 (250)
170 PRK11144 modC molybdate transp 99.1 1.2E-10 2.6E-15 124.8 8.3 150 78-234 21-198 (352)
171 cd03229 ABC_Class3 This class 99.1 1.3E-10 2.8E-15 112.5 7.7 66 167-233 101-169 (178)
172 PRK13543 cytochrome c biogenes 99.1 1.5E-10 3.3E-15 115.5 8.3 154 78-233 34-205 (214)
173 cd03258 ABC_MetN_methionine_tr 99.1 1.4E-10 3.1E-15 117.4 8.1 156 78-234 28-210 (233)
174 PRK09536 btuD corrinoid ABC tr 99.1 1.2E-10 2.6E-15 126.0 7.9 155 78-234 26-208 (402)
175 cd03269 ABC_putative_ATPase Th 99.1 1.4E-10 3E-15 115.5 7.7 148 78-234 23-197 (210)
176 PRK11629 lolD lipoprotein tran 99.1 1.7E-10 3.6E-15 116.8 8.4 144 78-228 32-208 (233)
177 cd03296 ABC_CysA_sulfate_impor 99.1 1.5E-10 3.3E-15 117.6 7.9 155 78-233 25-205 (239)
178 PRK10584 putative ABC transpor 99.1 1.7E-10 3.7E-15 116.4 8.2 150 78-228 33-209 (228)
179 TIGR02211 LolD_lipo_ex lipopro 99.1 1.6E-10 3.5E-15 116.0 8.0 143 78-227 28-203 (221)
180 PRK12326 preprotein translocas 99.1 3.7E-09 7.9E-14 118.6 19.3 122 261-420 411-548 (764)
181 COG4555 NatA ABC-type Na+ tran 99.1 8.3E-11 1.8E-15 110.8 5.3 157 77-235 24-203 (245)
182 cd03266 ABC_NatA_sodium_export 99.1 1.3E-10 2.9E-15 116.3 7.2 148 78-233 28-204 (218)
183 cd03301 ABC_MalK_N The N-termi 99.1 1.8E-10 4E-15 114.9 8.2 155 78-233 23-199 (213)
184 cd03265 ABC_DrrA DrrA is the A 99.1 1.7E-10 3.6E-15 115.8 7.8 156 78-234 23-201 (220)
185 cd03246 ABCC_Protease_Secretio 99.1 2E-10 4.3E-15 110.7 8.0 60 167-228 97-158 (173)
186 PRK11247 ssuB aliphatic sulfon 99.1 1.7E-10 3.7E-15 118.2 8.0 150 78-234 35-203 (257)
187 TIGR01288 nodI ATP-binding ABC 99.1 1.8E-10 3.8E-15 121.3 8.2 155 78-234 27-204 (303)
188 cd03219 ABC_Mj1267_LivG_branch 99.1 2E-10 4.4E-15 116.5 8.4 154 78-233 23-211 (236)
189 TIGR01166 cbiO cobalt transpor 99.1 1.9E-10 4.1E-15 112.6 7.9 142 78-227 15-188 (190)
190 cd03294 ABC_Pro_Gly_Bertaine T 99.1 2.2E-10 4.7E-15 118.5 8.6 150 78-234 47-230 (269)
191 TIGR03258 PhnT 2-aminoethylpho 99.1 4E-10 8.6E-15 120.8 10.8 151 78-234 28-208 (362)
192 KOG0953 Mitochondrial RNA heli 99.1 1.7E-09 3.7E-14 115.3 15.2 276 81-419 191-477 (700)
193 TIGR03608 L_ocin_972_ABC putat 99.1 1.8E-10 4E-15 114.2 7.6 143 78-228 21-196 (206)
194 cd03215 ABC_Carb_Monos_II This 99.1 3.8E-10 8.3E-15 109.6 9.7 129 78-233 23-172 (182)
195 cd03262 ABC_HisP_GlnQ_permease 99.1 1.7E-10 3.7E-15 115.1 7.4 154 78-233 23-203 (213)
196 cd03292 ABC_FtsE_transporter F 99.1 2E-10 4.3E-15 114.7 7.5 142 78-227 24-197 (214)
197 cd03268 ABC_BcrA_bacitracin_re 99.1 1.8E-10 3.8E-15 114.5 7.1 154 78-233 23-194 (208)
198 TIGR01277 thiQ thiamine ABC tr 99.1 2.3E-10 5E-15 114.1 8.0 155 78-233 21-197 (213)
199 PRK13650 cbiO cobalt transport 99.1 1.8E-10 3.8E-15 119.8 7.4 149 78-233 30-208 (279)
200 cd03225 ABC_cobalt_CbiO_domain 99.1 2.1E-10 4.6E-15 114.2 7.6 154 78-233 24-202 (211)
201 TIGR02142 modC_ABC molybdenum 99.1 2.4E-10 5.1E-15 122.8 8.4 150 78-234 20-201 (354)
202 cd03224 ABC_TM1139_LivF_branch 99.1 1.7E-10 3.7E-15 115.9 6.8 154 78-233 23-200 (222)
203 cd03235 ABC_Metallic_Cations A 99.1 1.9E-10 4.1E-15 114.7 7.1 156 77-234 21-201 (213)
204 PLN03142 Probable chromatin-re 99.1 2.5E-09 5.4E-14 126.6 17.5 114 278-422 486-602 (1033)
205 PRK15079 oligopeptide ABC tran 99.1 2.7E-10 5.8E-15 120.9 8.5 151 78-234 44-231 (331)
206 cd03218 ABC_YhbG The ABC trans 99.1 2.8E-10 6.1E-15 115.1 8.3 154 78-233 23-201 (232)
207 PRK11831 putative ABC transpor 99.1 2.7E-10 5.8E-15 117.9 8.3 150 78-234 30-213 (269)
208 PRK11248 tauB taurine transpor 99.1 3.1E-10 6.7E-15 116.4 8.6 147 78-233 24-197 (255)
209 cd03237 ABC_RNaseL_inhibitor_d 99.1 5E-10 1.1E-14 114.0 10.0 150 78-234 22-185 (246)
210 TIGR03864 PQQ_ABC_ATP ABC tran 99.1 2.7E-10 5.8E-15 115.6 7.9 144 78-228 24-195 (236)
211 TIGR01184 ntrCD nitrate transp 99.1 2.9E-10 6.4E-15 114.8 8.2 154 78-234 8-184 (230)
212 PRK10771 thiQ thiamine transpo 99.1 3.5E-10 7.5E-15 114.4 8.4 156 78-234 22-199 (232)
213 smart00487 DEXDc DEAD-like hel 99.1 1.6E-09 3.4E-14 105.7 12.7 168 62-237 4-183 (201)
214 PRK13637 cbiO cobalt transport 99.1 2.5E-10 5.5E-15 119.1 7.5 152 78-234 30-214 (287)
215 TIGR03522 GldA_ABC_ATP gliding 99.1 2.2E-10 4.7E-15 120.4 6.9 155 78-235 25-202 (301)
216 TIGR02562 cas3_yersinia CRISPR 99.0 1.4E-08 3E-13 117.7 21.8 104 282-409 759-881 (1110)
217 PRK11308 dppF dipeptide transp 99.0 3.6E-10 7.9E-15 119.8 8.3 151 78-234 38-224 (327)
218 PRK13647 cbiO cobalt transport 99.0 3.3E-10 7.1E-15 117.5 7.6 149 78-234 28-207 (274)
219 PRK10908 cell division protein 99.0 3.7E-10 8E-15 113.5 7.8 154 78-233 25-205 (222)
220 COG1137 YhbG ABC-type (unclass 99.0 2.4E-10 5.2E-15 107.6 5.8 148 77-226 26-199 (243)
221 COG0444 DppD ABC-type dipeptid 99.0 3.5E-10 7.6E-15 115.2 7.4 154 78-235 28-224 (316)
222 PRK13538 cytochrome c biogenes 99.0 2.7E-10 5.9E-15 112.8 6.5 142 78-227 24-190 (204)
223 cd03295 ABC_OpuCA_Osmoprotecti 99.0 4.1E-10 9E-15 114.6 8.0 152 78-234 24-205 (242)
224 TIGR03415 ABC_choXWV_ATP choli 99.0 5.1E-10 1.1E-14 120.2 9.0 150 78-234 47-234 (382)
225 PRK13646 cbiO cobalt transport 99.0 3.5E-10 7.5E-15 118.0 7.5 151 78-234 30-215 (286)
226 PRK11300 livG leucine/isoleuci 99.0 4.6E-10 1E-14 115.3 8.3 155 78-233 28-222 (255)
227 PRK13635 cbiO cobalt transport 99.0 4.4E-10 9.5E-15 116.8 7.9 144 78-228 30-203 (279)
228 PRK11264 putative amino-acid A 99.0 5.2E-10 1.1E-14 114.5 8.3 149 78-234 26-213 (250)
229 cd03257 ABC_NikE_OppD_transpor 99.0 3.4E-10 7.3E-15 114.2 6.8 155 78-233 28-214 (228)
230 PRK11124 artP arginine transpo 99.0 3.9E-10 8.5E-15 114.8 7.4 149 78-234 25-210 (242)
231 PRK13540 cytochrome c biogenes 99.0 5.2E-10 1.1E-14 110.4 8.0 149 78-228 24-189 (200)
232 PRK13634 cbiO cobalt transport 99.0 4.8E-10 1E-14 117.2 8.1 151 78-234 30-215 (290)
233 cd03232 ABC_PDR_domain2 The pl 99.0 6.7E-10 1.5E-14 108.9 8.4 126 78-227 30-169 (192)
234 TIGR03411 urea_trans_UrtD urea 99.0 6.7E-10 1.5E-14 113.1 8.6 153 78-233 25-210 (242)
235 PRK13539 cytochrome c biogenes 99.0 4E-10 8.7E-15 111.9 6.8 142 78-227 25-188 (207)
236 PRK09493 glnQ glutamine ABC tr 99.0 5.6E-10 1.2E-14 113.6 7.9 148 78-233 24-204 (240)
237 PRK10575 iron-hydroxamate tran 99.0 4.8E-10 1E-14 115.7 7.5 156 78-234 34-217 (265)
238 cd03233 ABC_PDR_domain1 The pl 99.0 1.2E-09 2.5E-14 108.1 9.7 139 78-233 30-188 (202)
239 COG4175 ProV ABC-type proline/ 99.0 2.9E-10 6.3E-15 114.1 5.4 145 78-229 51-228 (386)
240 cd03213 ABCG_EPDR ABCG transpo 99.0 1E-09 2.2E-14 107.8 9.0 132 78-233 32-180 (194)
241 cd03247 ABCC_cytochrome_bd The 99.0 4.6E-10 9.9E-15 108.7 6.4 62 164-228 96-159 (178)
242 cd03223 ABCD_peroxisomal_ALDP 99.0 1.9E-09 4.1E-14 103.0 10.6 121 78-228 24-150 (166)
243 TIGR03740 galliderm_ABC gallid 99.0 6.2E-10 1.3E-14 111.9 7.6 148 78-234 23-193 (223)
244 PRK10895 lipopolysaccharide AB 99.0 6.4E-10 1.4E-14 113.2 7.7 148 78-233 26-205 (241)
245 PRK13651 cobalt transporter AT 99.0 5.1E-10 1.1E-14 117.6 7.1 150 78-234 30-234 (305)
246 TIGR03005 ectoine_ehuA ectoine 99.0 6.7E-10 1.5E-14 113.8 7.9 150 78-234 23-216 (252)
247 COG4096 HsdR Type I site-speci 99.0 3.1E-08 6.6E-13 111.2 21.3 143 279-451 426-579 (875)
248 cd03297 ABC_ModC_molybdenum_tr 99.0 5.2E-10 1.1E-14 111.7 6.8 149 78-234 21-201 (214)
249 cd03234 ABCG_White The White s 99.0 9E-10 2E-14 110.9 8.4 155 78-234 30-213 (226)
250 cd03231 ABC_CcmA_heme_exporter 99.0 6.9E-10 1.5E-14 109.6 7.4 141 78-226 23-185 (201)
251 PRK13643 cbiO cobalt transport 99.0 4.2E-10 9E-15 117.5 6.1 155 78-234 29-213 (288)
252 cd03263 ABC_subfamily_A The AB 99.0 6.9E-10 1.5E-14 111.3 7.5 147 78-233 25-200 (220)
253 TIGR01189 ccmA heme ABC export 99.0 6.9E-10 1.5E-14 109.4 7.3 141 78-226 23-187 (198)
254 PRK09984 phosphonate/organopho 99.0 6.6E-10 1.4E-14 114.6 7.4 156 78-234 27-222 (262)
255 TIGR02982 heterocyst_DevA ABC 99.0 5.8E-10 1.3E-14 111.8 6.8 154 78-232 28-208 (220)
256 PRK13632 cbiO cobalt transport 99.0 7.3E-10 1.6E-14 114.7 7.8 144 78-228 32-205 (271)
257 TIGR02769 nickel_nikE nickel i 99.0 9.8E-10 2.1E-14 113.5 8.6 151 78-234 34-220 (265)
258 PRK13644 cbiO cobalt transport 99.0 7.3E-10 1.6E-14 114.9 7.6 143 78-228 25-198 (274)
259 PRK10619 histidine/lysine/argi 99.0 9.6E-10 2.1E-14 113.0 8.4 148 78-233 28-220 (257)
260 PRK10247 putative ABC transpor 99.0 8.5E-10 1.9E-14 111.0 7.8 144 78-228 30-200 (225)
261 PRK13548 hmuV hemin importer A 99.0 9.1E-10 2E-14 113.2 8.2 150 78-234 25-210 (258)
262 PRK15439 autoinducer 2 ABC tra 99.0 9.1E-10 2E-14 124.4 8.8 149 78-234 34-209 (510)
263 PRK15093 antimicrobial peptide 99.0 8.7E-10 1.9E-14 117.2 8.1 153 78-234 30-228 (330)
264 TIGR03410 urea_trans_UrtE urea 99.0 6.8E-10 1.5E-14 112.2 7.0 155 78-233 23-200 (230)
265 PRK14250 phosphate ABC transpo 99.0 7.7E-10 1.7E-14 112.5 7.4 150 78-234 26-201 (241)
266 PRK13642 cbiO cobalt transport 99.0 8.4E-10 1.8E-14 114.6 7.8 155 78-233 30-208 (277)
267 PRK11614 livF leucine/isoleuci 99.0 6E-10 1.3E-14 113.1 6.6 155 78-234 28-206 (237)
268 PRK13652 cbiO cobalt transport 99.0 9.7E-10 2.1E-14 114.2 8.2 156 78-234 27-207 (277)
269 cd03238 ABC_UvrA The excision 99.0 1.4E-09 3E-14 104.5 8.7 126 78-229 18-152 (176)
270 PRK10762 D-ribose transporter 99.0 9.1E-10 2E-14 124.3 8.6 155 78-234 27-210 (501)
271 PRK13631 cbiO cobalt transport 99.0 9.1E-10 2E-14 116.4 8.1 150 78-234 49-245 (320)
272 PRK10253 iron-enterobactin tra 99.0 7.9E-10 1.7E-14 114.1 7.4 156 78-234 30-213 (265)
273 PRK13636 cbiO cobalt transport 99.0 9.1E-10 2E-14 114.7 7.8 156 78-234 29-211 (283)
274 COG1123 ATPase components of v 99.0 1.1E-09 2.3E-14 119.8 8.4 152 78-234 32-224 (539)
275 PRK13639 cbiO cobalt transport 99.0 1.2E-09 2.6E-14 113.4 8.4 149 78-234 25-206 (275)
276 cd03228 ABCC_MRP_Like The MRP 99.0 1E-09 2.2E-14 105.5 7.3 59 167-228 97-157 (171)
277 PRK13633 cobalt transporter AT 99.0 1.1E-09 2.3E-14 114.1 8.0 151 78-229 33-208 (280)
278 cd03264 ABC_drug_resistance_li 99.0 8.7E-10 1.9E-14 109.8 6.9 146 78-233 23-197 (211)
279 cd03300 ABC_PotA_N PotA is an 99.0 1.5E-09 3.2E-14 109.8 8.7 150 78-234 23-200 (232)
280 cd03216 ABC_Carb_Monos_I This 99.0 1.6E-09 3.4E-14 103.2 8.3 125 78-233 23-150 (163)
281 PRK11022 dppD dipeptide transp 99.0 1.2E-09 2.5E-14 116.0 8.1 153 78-234 30-223 (326)
282 PRK09473 oppD oligopeptide tra 99.0 1.2E-09 2.5E-14 116.1 8.1 153 78-234 39-231 (330)
283 PRK11231 fecE iron-dicitrate t 99.0 8.8E-10 1.9E-14 113.2 6.9 155 78-234 25-207 (255)
284 PRK09700 D-allose transporter 99.0 1.2E-09 2.6E-14 123.6 8.5 155 78-234 28-214 (510)
285 COG0410 LivF ABC-type branched 99.0 1.1E-09 2.5E-14 106.1 6.9 155 78-235 26-207 (237)
286 PRK13641 cbiO cobalt transport 99.0 8.8E-10 1.9E-14 115.1 6.7 150 78-234 30-214 (287)
287 cd03217 ABC_FeS_Assembly ABC-t 99.0 2E-09 4.3E-14 106.3 8.8 125 78-228 23-166 (200)
288 PRK09544 znuC high-affinity zi 99.0 1.7E-09 3.8E-14 110.5 8.7 149 78-234 27-190 (251)
289 TIGR03873 F420-0_ABC_ATP propo 99.0 1.2E-09 2.7E-14 112.1 7.6 155 78-234 24-206 (256)
290 cd03299 ABC_ModC_like Archeal 99.0 1.7E-09 3.6E-14 109.6 8.5 155 78-233 22-198 (235)
291 PRK13640 cbiO cobalt transport 98.9 1.3E-09 2.8E-14 113.5 7.7 148 78-232 30-210 (282)
292 TIGR03771 anch_rpt_ABC anchore 98.9 2.1E-09 4.5E-14 108.0 8.8 146 78-233 3-181 (223)
293 TIGR00968 3a0106s01 sulfate AB 98.9 1.8E-09 3.9E-14 109.6 8.3 156 78-234 23-200 (237)
294 PRK13541 cytochrome c biogenes 98.9 1.4E-09 3E-14 106.9 7.2 147 78-227 23-184 (195)
295 cd03267 ABC_NatA_like Similar 98.9 1.9E-09 4.2E-14 109.2 8.2 155 78-233 44-222 (236)
296 PRK03695 vitamin B12-transport 98.9 1.8E-09 3.8E-14 110.4 7.9 149 78-234 19-202 (248)
297 PRK13645 cbiO cobalt transport 98.9 1.1E-09 2.4E-14 114.5 6.5 156 78-234 34-220 (289)
298 COG3845 ABC-type uncharacteriz 98.9 1.4E-09 3.1E-14 115.7 7.1 156 77-234 26-209 (501)
299 PRK10982 galactose/methyl gala 98.9 2E-09 4.3E-14 121.2 8.7 155 78-234 21-203 (491)
300 PRK13649 cbiO cobalt transport 98.9 1.3E-09 2.8E-14 113.5 6.7 150 78-234 30-214 (280)
301 COG4148 ModC ABC-type molybdat 98.9 5.8E-10 1.3E-14 110.1 3.7 155 80-235 23-199 (352)
302 PRK13648 cbiO cobalt transport 98.9 2.1E-09 4.5E-14 111.3 8.0 144 78-228 32-205 (269)
303 PRK15112 antimicrobial peptide 98.9 1.8E-09 3.8E-14 111.6 7.5 150 78-233 36-218 (267)
304 PRK13638 cbiO cobalt transport 98.9 1.9E-09 4.1E-14 111.7 7.8 149 78-234 24-205 (271)
305 PRK10261 glutathione transport 98.9 1.5E-09 3.2E-14 125.4 7.6 151 78-234 347-533 (623)
306 COG4181 Predicted ABC-type tra 98.9 3.4E-09 7.4E-14 97.3 8.0 150 77-233 32-214 (228)
307 cd03222 ABC_RNaseL_inhibitor T 98.9 5.5E-09 1.2E-13 100.4 10.0 118 77-234 21-141 (177)
308 PRK13549 xylose transporter AT 98.9 2.2E-09 4.8E-14 121.3 8.3 155 78-234 28-212 (506)
309 COG4152 ABC-type uncharacteriz 98.9 2.6E-09 5.6E-14 103.7 7.4 155 78-235 25-200 (300)
310 TIGR01187 potA spermidine/putr 98.9 1.9E-09 4E-14 114.5 7.0 142 86-234 1-170 (325)
311 PRK15056 manganese/iron transp 98.9 1.9E-09 4.2E-14 111.7 6.9 71 161-233 137-210 (272)
312 PRK10419 nikE nickel transport 98.9 3.3E-09 7.1E-14 109.7 8.3 151 78-234 35-221 (268)
313 TIGR01978 sufC FeS assembly AT 98.9 2.8E-09 6.2E-14 108.6 7.7 148 78-227 23-205 (243)
314 TIGR02323 CP_lyasePhnK phospho 98.9 2.5E-09 5.3E-14 109.7 7.3 150 78-233 26-217 (253)
315 cd03245 ABCC_bacteriocin_expor 98.9 1.1E-09 2.3E-14 109.9 4.5 150 78-231 27-204 (220)
316 PRK11288 araG L-arabinose tran 98.9 3.2E-09 7E-14 119.8 8.8 148 78-233 27-208 (501)
317 cd03214 ABC_Iron-Siderophores_ 98.9 4.8E-09 1E-13 101.7 8.8 141 78-233 22-166 (180)
318 cd03260 ABC_PstB_phosphate_tra 98.9 5.9E-09 1.3E-13 105.1 9.3 152 78-233 23-208 (227)
319 PRK11701 phnK phosphonate C-P 98.9 3E-09 6.6E-14 109.4 7.4 151 78-234 29-221 (258)
320 KOG0949 Predicted helicase, DE 98.9 4.7E-08 1E-12 110.3 16.9 163 65-236 510-682 (1330)
321 COG1123 ATPase components of v 98.9 2.8E-09 6.1E-14 116.6 7.2 152 77-234 313-499 (539)
322 TIGR02324 CP_lyasePhnL phospho 98.9 3.6E-09 7.8E-14 106.4 7.5 156 77-234 30-218 (224)
323 cd00046 DEXDc DEAD-like helica 98.9 8.4E-09 1.8E-13 94.4 9.4 137 82-226 1-144 (144)
324 cd03369 ABCC_NFT1 Domain 2 of 98.9 2.4E-09 5.2E-14 106.3 6.0 140 78-228 31-186 (207)
325 COG1119 ModF ABC-type molybden 98.9 6.9E-09 1.5E-13 101.5 8.8 67 160-226 165-233 (257)
326 cd03254 ABCC_Glucan_exporter_l 98.9 2E-09 4.2E-14 108.7 5.3 147 78-228 26-200 (229)
327 cd03252 ABCC_Hemolysin The ABC 98.9 2.2E-09 4.7E-14 109.0 5.7 147 78-228 25-199 (237)
328 COG4608 AppF ABC-type oligopep 98.9 2.4E-09 5.3E-14 106.8 5.5 138 77-233 35-178 (268)
329 PRK10261 glutathione transport 98.9 4.3E-09 9.3E-14 121.6 8.3 153 78-234 39-238 (623)
330 COG2274 SunT ABC-type bacterio 98.9 3.4E-09 7.5E-14 121.8 7.4 147 77-233 495-675 (709)
331 cd03248 ABCC_TAP TAP, the Tran 98.9 3.9E-09 8.5E-14 106.3 7.1 147 78-228 37-211 (226)
332 COG1129 MglA ABC-type sugar tr 98.9 4.6E-09 1E-13 114.1 8.0 151 77-235 30-215 (500)
333 TIGR00348 hsdR type I site-spe 98.9 3.7E-08 8.1E-13 114.2 16.0 102 279-410 514-638 (667)
334 PRK09700 D-allose transporter 98.9 4.3E-09 9.4E-14 119.1 8.2 155 78-234 286-478 (510)
335 PRK10762 D-ribose transporter 98.9 4.5E-09 9.8E-14 118.6 8.2 156 77-234 274-464 (501)
336 PRK14259 phosphate ABC transpo 98.9 6.9E-09 1.5E-13 107.3 9.0 151 78-234 36-222 (269)
337 TIGR00972 3a0107s01c2 phosphat 98.9 6.9E-09 1.5E-13 106.0 8.9 151 78-234 24-212 (247)
338 PRK11288 araG L-arabinose tran 98.9 3.9E-09 8.4E-14 119.2 7.6 156 77-234 275-465 (501)
339 PRK13409 putative ATPase RIL; 98.8 7.1E-09 1.5E-13 118.3 9.7 148 78-233 362-522 (590)
340 cd03290 ABCC_SUR1_N The SUR do 98.8 5.3E-09 1.1E-13 104.8 7.6 148 78-228 24-204 (218)
341 PRK14247 phosphate ABC transpo 98.8 1.1E-08 2.4E-13 104.8 10.1 151 78-233 26-213 (250)
342 PRK14265 phosphate ABC transpo 98.8 6.5E-09 1.4E-13 107.8 8.5 151 78-234 43-229 (274)
343 TIGR03269 met_CoM_red_A2 methy 98.8 4.3E-09 9.3E-14 119.4 7.7 155 78-234 307-497 (520)
344 PRK15134 microcin C ABC transp 98.8 3.8E-09 8.2E-14 120.1 7.2 157 77-234 308-495 (529)
345 PRK14242 phosphate transporter 98.8 6.9E-09 1.5E-13 106.4 8.5 151 78-234 29-217 (253)
346 PRK13547 hmuV hemin importer A 98.8 7.5E-09 1.6E-13 107.0 8.7 155 78-233 24-223 (272)
347 PF07652 Flavi_DEAD: Flaviviru 98.8 1E-08 2.2E-13 92.8 8.3 134 79-227 2-137 (148)
348 cd03251 ABCC_MsbA MsbA is an e 98.8 3.1E-09 6.6E-14 107.7 5.6 147 78-228 25-199 (234)
349 TIGR03269 met_CoM_red_A2 methy 98.8 9.2E-09 2E-13 116.7 10.1 73 161-234 163-238 (520)
350 TIGR02770 nickel_nikD nickel i 98.8 6.2E-09 1.3E-13 105.2 7.6 151 78-233 9-194 (230)
351 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.8 3.1E-09 6.7E-14 107.9 5.5 147 78-228 26-200 (238)
352 PRK14273 phosphate ABC transpo 98.8 4.4E-09 9.5E-14 107.9 6.6 152 77-234 29-218 (254)
353 PRK10418 nikD nickel transport 98.8 8.7E-09 1.9E-13 105.7 8.7 153 77-234 25-210 (254)
354 COG4988 CydD ABC-type transpor 98.8 4.7E-09 1E-13 114.4 6.9 148 77-228 343-517 (559)
355 PRK14258 phosphate ABC transpo 98.8 8E-09 1.7E-13 106.4 8.3 153 78-234 30-220 (261)
356 COG1101 PhnK ABC-type uncharac 98.8 3.8E-09 8.3E-14 100.7 5.2 160 65-227 12-210 (263)
357 PRK14267 phosphate ABC transpo 98.8 8.5E-09 1.8E-13 105.8 8.2 152 78-234 27-217 (253)
358 PRK14269 phosphate ABC transpo 98.8 4.8E-09 1E-13 107.1 6.2 151 78-234 25-210 (246)
359 COG4598 HisP ABC-type histidin 98.8 3E-09 6.4E-14 98.4 4.1 142 78-227 29-213 (256)
360 cd03253 ABCC_ATM1_transporter 98.8 6E-09 1.3E-13 105.7 6.8 147 78-228 24-198 (236)
361 PRK14268 phosphate ABC transpo 98.8 8.6E-09 1.9E-13 106.0 8.0 151 78-234 35-222 (258)
362 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.8 1.5E-08 3.2E-13 94.5 8.7 104 78-227 23-128 (144)
363 PRK10938 putative molybdenum t 98.8 5E-09 1.1E-13 118.0 6.6 71 161-233 130-203 (490)
364 PRK14262 phosphate ABC transpo 98.8 1.1E-08 2.3E-13 104.8 8.4 150 78-233 26-213 (250)
365 CHL00131 ycf16 sulfate ABC tra 98.8 1.1E-08 2.4E-13 104.8 8.5 65 162-228 146-213 (252)
366 TIGR02633 xylG D-xylose ABC tr 98.8 6.7E-09 1.4E-13 117.3 7.4 155 78-234 24-210 (500)
367 PRK10744 pstB phosphate transp 98.8 1.2E-08 2.6E-13 105.1 8.6 151 78-234 36-224 (260)
368 PRK14245 phosphate ABC transpo 98.8 9.5E-09 2.1E-13 105.2 7.7 150 78-233 26-213 (250)
369 cd03289 ABCC_CFTR2 The CFTR su 98.8 4.5E-09 9.7E-14 108.6 5.2 148 77-228 26-199 (275)
370 PRK14239 phosphate transporter 98.8 1.2E-08 2.5E-13 104.7 8.2 151 78-234 28-216 (252)
371 PRK14251 phosphate ABC transpo 98.8 1.2E-08 2.5E-13 104.6 8.0 151 78-234 27-215 (251)
372 PRK07246 bifunctional ATP-depe 98.8 4.1E-07 8.9E-12 107.5 21.9 134 260-415 630-780 (820)
373 PRK14241 phosphate transporter 98.8 1.4E-08 2.9E-13 104.5 8.4 152 78-234 27-216 (258)
374 PRK15439 autoinducer 2 ABC tra 98.8 9.2E-09 2E-13 116.3 7.6 156 77-234 285-472 (510)
375 PRK13546 teichoic acids export 98.8 3.3E-08 7.1E-13 101.8 10.7 155 77-234 46-212 (264)
376 PRK14240 phosphate transporter 98.8 1.5E-08 3.2E-13 103.8 8.0 150 78-233 26-213 (250)
377 PRK13549 xylose transporter AT 98.8 1.2E-08 2.7E-13 115.2 8.1 156 77-234 284-474 (506)
378 TIGR01257 rim_protein retinal- 98.8 9.4E-09 2E-13 129.1 7.7 156 78-235 1962-2140(2272)
379 PRK15134 microcin C ABC transp 98.8 1E-08 2.2E-13 116.6 7.3 152 78-234 32-226 (529)
380 PRK14243 phosphate transporter 98.8 1.8E-08 3.8E-13 104.0 8.4 151 77-233 32-218 (264)
381 TIGR02633 xylG D-xylose ABC tr 98.8 9.5E-09 2.1E-13 116.1 7.0 155 78-234 283-472 (500)
382 PRK13103 secA preprotein trans 98.8 1.9E-07 4.1E-12 107.6 17.3 122 261-420 433-592 (913)
383 KOG0058 Peptide exporter, ABC 98.8 7.9E-09 1.7E-13 115.0 5.9 144 77-230 490-667 (716)
384 PRK14254 phosphate ABC transpo 98.8 1.7E-08 3.7E-13 105.2 8.2 150 78-233 62-247 (285)
385 PRK14275 phosphate ABC transpo 98.8 1.3E-08 2.8E-13 106.2 7.3 152 77-234 61-250 (286)
386 PRK14260 phosphate ABC transpo 98.8 2.8E-08 6.1E-13 102.3 9.5 150 78-233 30-217 (259)
387 COG4172 ABC-type uncharacteriz 98.7 1.9E-08 4.2E-13 104.1 8.0 155 77-235 32-228 (534)
388 cd03244 ABCC_MRP_domain2 Domai 98.7 5.4E-09 1.2E-13 104.9 4.0 147 78-228 27-200 (221)
389 COG4161 ArtP ABC-type arginine 98.7 1.2E-08 2.7E-13 92.6 5.8 150 78-229 25-204 (242)
390 cd03250 ABCC_MRP_domain1 Domai 98.7 2.6E-08 5.7E-13 98.6 8.8 147 78-228 28-190 (204)
391 PRK14248 phosphate ABC transpo 98.7 1.8E-08 4E-13 104.2 8.0 150 78-233 44-231 (268)
392 PRK14235 phosphate transporter 98.7 2.1E-08 4.5E-13 103.7 8.2 150 78-233 42-230 (267)
393 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.7 3.6E-08 7.9E-13 99.1 9.7 148 77-233 44-210 (224)
394 COG0396 sufC Cysteine desulfur 98.7 1.9E-08 4E-13 97.4 7.1 149 78-235 27-210 (251)
395 PRK14249 phosphate ABC transpo 98.7 1.5E-08 3.3E-13 103.8 7.0 151 78-234 27-215 (251)
396 PRK11819 putative ABC transpor 98.7 2.6E-08 5.7E-13 113.8 9.6 152 77-233 29-228 (556)
397 PRK14256 phosphate ABC transpo 98.7 3.7E-08 7.9E-13 101.0 9.6 152 78-234 27-216 (252)
398 PRK14263 phosphate ABC transpo 98.7 2.1E-08 4.7E-13 103.1 7.8 151 78-234 31-217 (261)
399 COG4172 ABC-type uncharacteriz 98.7 1.9E-08 4E-13 104.3 7.1 153 77-235 309-497 (534)
400 PRK14255 phosphate ABC transpo 98.7 4E-08 8.7E-13 100.7 9.7 150 78-233 28-215 (252)
401 TIGR01257 rim_protein retinal- 98.7 1.6E-08 3.5E-13 127.0 8.0 148 78-234 953-1129(2272)
402 PRK14253 phosphate ABC transpo 98.7 2.5E-08 5.5E-13 102.0 8.1 151 78-234 26-213 (249)
403 TIGR01842 type_I_sec_PrtD type 98.7 1.5E-08 3.2E-13 115.7 6.8 149 77-228 340-516 (544)
404 PRK14237 phosphate transporter 98.7 3.6E-08 7.8E-13 101.9 8.8 151 78-234 43-231 (267)
405 PRK14272 phosphate ABC transpo 98.7 6.4E-08 1.4E-12 99.2 10.5 151 78-233 27-215 (252)
406 PRK10982 galactose/methyl gala 98.7 2E-08 4.4E-13 113.1 7.4 73 160-234 385-460 (491)
407 cd00267 ABC_ATPase ABC (ATP-bi 98.7 3.2E-08 6.9E-13 93.7 7.5 119 78-228 22-142 (157)
408 PRK13409 putative ATPase RIL; 98.7 1.6E-08 3.5E-13 115.4 6.5 72 160-234 206-280 (590)
409 PF00005 ABC_tran: ABC transpo 98.7 9.6E-09 2.1E-13 94.7 3.8 114 78-193 8-135 (137)
410 COG4136 ABC-type uncharacteriz 98.7 7.6E-09 1.7E-13 92.9 2.9 139 77-226 24-195 (213)
411 PRK14257 phosphate ABC transpo 98.7 4.7E-08 1E-12 103.8 9.4 151 78-234 105-293 (329)
412 PRK14270 phosphate ABC transpo 98.7 4.9E-08 1.1E-12 100.0 9.3 151 78-234 27-215 (251)
413 PRK11174 cysteine/glutathione 98.7 1.4E-08 3E-13 117.2 5.8 148 78-229 373-547 (588)
414 PRK15064 ABC transporter ATP-b 98.7 4.1E-08 8.9E-13 111.7 9.5 146 78-233 24-220 (530)
415 TIGR03719 ABC_ABC_ChvD ATP-bin 98.7 3.6E-08 7.7E-13 112.6 8.9 152 77-233 27-226 (552)
416 PRK13545 tagH teichoic acids e 98.7 5.5E-08 1.2E-12 107.0 9.8 145 78-233 47-211 (549)
417 PRK14236 phosphate transporter 98.7 5.9E-08 1.3E-12 100.6 9.6 153 78-234 48-236 (272)
418 PRK14244 phosphate ABC transpo 98.7 3.2E-08 7E-13 101.3 7.5 150 78-233 28-216 (251)
419 cd03278 ABC_SMC_barmotin Barmo 98.7 7.3E-08 1.6E-12 94.7 9.6 137 78-232 20-182 (197)
420 PRK14271 phosphate ABC transpo 98.7 4E-08 8.8E-13 101.9 8.2 151 78-234 44-231 (276)
421 PRK10535 macrolide transporter 98.7 4E-08 8.6E-13 114.1 8.9 148 78-233 31-211 (648)
422 PRK11160 cysteine/glutathione 98.7 2.2E-08 4.8E-13 114.9 6.8 148 77-228 362-536 (574)
423 COG1132 MdlB ABC-type multidru 98.7 3E-08 6.5E-13 113.8 7.7 152 78-233 352-531 (567)
424 TIGR02868 CydC thiol reductant 98.7 2E-08 4.4E-13 114.3 6.2 145 77-225 357-528 (529)
425 PRK14274 phosphate ABC transpo 98.7 4.1E-08 8.9E-13 101.0 7.9 151 78-234 35-223 (259)
426 PRK14264 phosphate ABC transpo 98.7 5.8E-08 1.3E-12 102.3 9.0 151 78-234 68-268 (305)
427 PRK10790 putative multidrug tr 98.7 2.3E-08 4.9E-13 115.4 6.5 150 77-230 363-539 (592)
428 PRK15177 Vi polysaccharide exp 98.7 5.5E-08 1.2E-12 96.9 8.4 153 78-234 10-172 (213)
429 PRK14246 phosphate ABC transpo 98.7 3.1E-08 6.7E-13 101.7 6.7 152 78-234 33-221 (257)
430 PRK14238 phosphate transporter 98.7 5.2E-08 1.1E-12 100.9 8.4 153 78-234 47-235 (271)
431 TIGR03797 NHPM_micro_ABC2 NHPM 98.7 2.2E-08 4.8E-13 117.5 6.3 145 78-228 476-647 (686)
432 PLN03211 ABC transporter G-25; 98.7 3.9E-08 8.5E-13 113.7 8.1 147 78-228 91-268 (659)
433 TIGR02857 CydD thiol reductant 98.7 2.4E-08 5.2E-13 113.7 6.1 149 77-229 344-520 (529)
434 PRK09580 sufC cysteine desulfu 98.7 7.4E-08 1.6E-12 98.5 9.1 60 166-227 145-206 (248)
435 cd03291 ABCC_CFTR1 The CFTR su 98.7 8.5E-08 1.8E-12 99.5 9.5 146 78-228 60-221 (282)
436 cd03236 ABC_RNaseL_inhibitor_d 98.7 5.3E-08 1.1E-12 99.6 7.8 72 161-234 134-208 (255)
437 TIGR02203 MsbA_lipidA lipid A 98.7 2E-08 4.3E-13 115.5 5.3 150 77-230 354-532 (571)
438 PRK15064 ABC transporter ATP-b 98.7 5.7E-08 1.2E-12 110.5 8.9 145 78-234 342-504 (530)
439 TIGR01193 bacteriocin_ABC ABC- 98.6 3.3E-08 7.2E-13 116.4 7.1 151 77-232 496-675 (708)
440 PRK14252 phosphate ABC transpo 98.6 7.2E-08 1.6E-12 99.6 8.8 151 78-234 39-229 (265)
441 KOG0055 Multidrug/pheromone ex 98.6 2.9E-08 6.3E-13 116.8 6.5 142 77-228 375-550 (1228)
442 PRK14261 phosphate ABC transpo 98.6 5.4E-08 1.2E-12 99.8 7.8 151 78-234 29-217 (253)
443 PRK14266 phosphate ABC transpo 98.6 5.6E-08 1.2E-12 99.5 7.4 150 78-233 26-213 (250)
444 TIGR03375 type_I_sec_LssB type 98.6 2.8E-08 6.2E-13 116.7 5.9 152 77-232 487-666 (694)
445 TIGR00954 3a01203 Peroxysomal 98.6 8.7E-08 1.9E-12 111.4 9.8 150 77-233 474-646 (659)
446 TIGR01194 cyc_pep_trnsptr cycl 98.6 3.7E-08 8.1E-13 112.5 6.7 149 77-228 364-533 (555)
447 TIGR00955 3a01204 The Eye Pigm 98.6 4.3E-08 9.3E-13 113.2 7.1 143 78-228 48-228 (617)
448 TIGR01192 chvA glucan exporter 98.6 5.3E-08 1.2E-12 111.9 7.8 148 77-228 357-532 (585)
449 cd03288 ABCC_SUR2 The SUR doma 98.6 2.5E-08 5.4E-13 102.5 4.5 148 78-229 44-218 (257)
450 PRK11176 lipid transporter ATP 98.6 2.2E-08 4.8E-13 115.4 4.6 151 78-232 366-545 (582)
451 COG4178 ABC-type uncharacteriz 98.6 6.1E-08 1.3E-12 107.6 7.7 151 78-234 416-582 (604)
452 TIGR03796 NHPM_micro_ABC1 NHPM 98.6 2.5E-08 5.4E-13 117.6 4.9 151 77-233 501-679 (710)
453 PRK13657 cyclic beta-1,2-gluca 98.6 2.7E-08 5.9E-13 114.7 5.1 152 77-232 357-536 (588)
454 COG4586 ABC-type uncharacteriz 98.6 5E-08 1.1E-12 96.5 6.0 75 160-235 150-227 (325)
455 TIGR00958 3a01208 Conjugate Tr 98.6 2.8E-08 6.1E-13 116.7 5.2 148 77-230 503-678 (711)
456 PRK10522 multidrug transporter 98.6 4.8E-08 1E-12 111.5 7.0 148 78-230 346-514 (547)
457 PRK11819 putative ABC transpor 98.6 1.2E-07 2.5E-12 108.4 9.4 151 78-233 347-510 (556)
458 COG0488 Uup ATPase components 98.6 1.5E-07 3.3E-12 104.9 10.0 145 77-226 25-210 (530)
459 PRK11147 ABC transporter ATPas 98.6 8.7E-08 1.9E-12 111.1 8.4 152 77-233 341-505 (635)
460 TIGR03719 ABC_ABC_ChvD ATP-bin 98.6 1.2E-07 2.6E-12 108.3 9.4 151 78-233 345-508 (552)
461 PRK10636 putative ABC transpor 98.6 8.6E-08 1.9E-12 111.0 8.1 147 77-233 334-495 (638)
462 PRK10789 putative multidrug tr 98.6 4.6E-08 1E-12 112.2 5.8 148 77-228 337-512 (569)
463 PRK10938 putative molybdenum t 98.6 1E-07 2.2E-12 107.5 8.4 67 160-227 395-463 (490)
464 TIGR00957 MRP_assoc_pro multi 98.6 5E-08 1.1E-12 123.0 6.2 148 77-228 1308-1482(1522)
465 cd03270 ABC_UvrA_I The excisio 98.6 2.4E-07 5.3E-12 93.2 9.5 67 160-228 131-201 (226)
466 PLN03130 ABC transporter C fam 98.6 6.6E-08 1.4E-12 122.0 6.4 149 77-229 1261-1436(1622)
467 PTZ00265 multidrug resistance 98.5 6.4E-08 1.4E-12 120.9 6.1 67 163-230 576-644 (1466)
468 CHL00122 secA preprotein trans 98.5 1.8E-06 3.8E-11 99.3 17.1 81 262-362 409-491 (870)
469 TIGR02204 MsbA_rel ABC transpo 98.5 6.4E-08 1.4E-12 111.5 5.5 148 78-229 363-538 (576)
470 PLN03232 ABC transporter C fam 98.5 6.4E-08 1.4E-12 121.9 5.8 149 77-229 1258-1433(1495)
471 COG4604 CeuD ABC-type enteroch 98.5 3E-08 6.5E-13 93.4 1.9 73 162-235 131-206 (252)
472 PTZ00243 ABC transporter; Prov 98.5 8.5E-08 1.8E-12 120.8 6.4 149 77-229 1332-1508(1560)
473 TIGR01271 CFTR_protein cystic 98.5 9.7E-08 2.1E-12 120.1 6.8 148 77-228 1241-1414(1490)
474 KOG0055 Multidrug/pheromone ex 98.5 1.1E-07 2.5E-12 111.9 6.6 141 77-227 1012-1186(1228)
475 KOG0057 Mitochondrial Fe/S clu 98.5 9.3E-08 2E-12 103.1 5.2 146 77-230 374-550 (591)
476 PRK11147 ABC transporter ATPas 98.5 3.2E-07 6.9E-12 106.5 9.9 68 161-233 151-221 (635)
477 PLN03140 ABC transporter G fam 98.5 2.3E-07 5.1E-12 115.5 9.3 144 78-229 903-1082(1470)
478 COG4618 ArpD ABC-type protease 98.5 1.7E-07 3.8E-12 100.1 6.9 149 77-234 358-540 (580)
479 TIGR01846 type_I_sec_HlyB type 98.5 1.5E-07 3.3E-12 110.6 6.8 148 78-229 480-655 (694)
480 PF04851 ResIII: Type III rest 98.5 4.4E-07 9.5E-12 87.7 8.8 145 66-226 3-182 (184)
481 COG1134 TagH ABC-type polysacc 98.5 1.8E-07 4E-12 91.7 5.8 152 78-234 50-216 (249)
482 KOG1123 RNA polymerase II tran 98.5 3.5E-06 7.5E-11 89.3 15.3 119 266-422 531-656 (776)
483 TIGR00956 3a01205 Pleiotropic 98.5 2.9E-07 6.2E-12 115.0 8.4 143 78-229 786-965 (1394)
484 PRK10636 putative ABC transpor 98.4 6.3E-07 1.4E-11 103.8 10.3 68 161-233 144-214 (638)
485 COG4167 SapF ABC-type antimicr 98.4 4.5E-07 9.8E-12 84.3 6.9 142 78-227 36-211 (267)
486 cd03240 ABC_Rad50 The catalyti 98.4 4.7E-07 1E-11 89.5 6.9 67 161-228 110-185 (204)
487 COG4619 ABC-type uncharacteriz 98.4 8.3E-08 1.8E-12 88.1 1.2 67 160-227 127-195 (223)
488 PLN03073 ABC transporter F fam 98.4 6.6E-07 1.4E-11 104.3 9.0 144 78-233 532-692 (718)
489 PTZ00265 multidrug resistance 98.4 2.4E-07 5.3E-12 115.8 5.8 66 166-232 1358-1425(1466)
490 PLN03140 ABC transporter G fam 98.4 4.4E-07 9.5E-12 113.1 7.3 147 78-226 188-397 (1470)
491 PRK12903 secA preprotein trans 98.4 3.7E-06 8E-11 96.2 13.7 161 218-420 363-540 (925)
492 COG0556 UvrB Helicase subunit 98.4 3E-06 6.4E-11 90.8 11.8 165 217-417 387-555 (663)
493 COG4107 PhnK ABC-type phosphon 98.4 5.9E-06 1.3E-10 76.4 12.2 105 161-270 146-255 (258)
494 COG4559 ABC-type hemin transpo 98.4 6.8E-07 1.5E-11 85.5 6.2 155 78-234 24-210 (259)
495 KOG0060 Long-chain acyl-CoA tr 98.3 4.8E-07 1E-11 98.0 5.6 154 77-234 457-635 (659)
496 COG0488 Uup ATPase components 98.3 1.2E-06 2.6E-11 97.8 8.6 143 77-226 344-496 (530)
497 PF02399 Herpes_ori_bp: Origin 98.3 2.9E-05 6.3E-10 88.5 19.3 293 79-421 47-390 (824)
498 KOG0061 Transporter, ABC super 98.3 1E-06 2.2E-11 101.0 7.8 146 78-231 53-235 (613)
499 COG4674 Uncharacterized ABC-ty 98.3 8.4E-07 1.8E-11 83.7 5.7 154 78-234 28-215 (249)
500 PRK12902 secA preprotein trans 98.3 4.1E-05 8.9E-10 88.2 19.9 80 263-362 425-506 (939)
No 1
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.1e-145 Score=1158.93 Aligned_cols=615 Identities=55% Similarity=0.948 Sum_probs=589.1
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHH
Q 005605 54 RYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVS 133 (688)
Q Consensus 54 ~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~ 133 (688)
...++.+.|..||++..+.+|+..+.++++++|+|+||||||||+||++++.. +.. ++. |+||||||++++++|
T Consensus 39 ~~~~i~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG-~~~----~g~-I~~TQPRRVAavslA 112 (674)
T KOG0922|consen 39 TNLSIQEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAG-FAS----SGK-IACTQPRRVAAVSLA 112 (674)
T ss_pred cccCHHHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcc-ccc----CCc-EEeecCchHHHHHHH
Confidence 33456678899999999999999999999999999999999999999999887 543 243 999999999999999
Q ss_pred HHHHHhhcccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecccCcChhhHHHHHHHHHHHHhc
Q 005605 134 RRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKN 213 (688)
Q Consensus 134 ~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEaher~~~~d~ll~~l~~i~~~ 213 (688)
+||+++++..+|+.|||.+||++..+.+|+|+|+|+|+|+|+++.+++|++|++|||||||||++.+|.++++||.+.++
T Consensus 113 ~RVAeE~~~~lG~~VGY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~ 192 (674)
T KOG0922|consen 113 KRVAEEMGCQLGEEVGYTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKK 192 (674)
T ss_pred HHHHHHhCCCcCceeeeEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEecccccHHHHHchhcCCCeeeeCCcccccceeecCCCchhHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHH
Q 005605 214 RPDLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIE 293 (688)
Q Consensus 214 ~~~~~vil~SAT~~~~~~~~~~~~~p~~~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~ 293 (688)
++++++|+||||+|+++|++||.++|++.++||.|||+++|.+.+..||+++.+.++.+||.++++|+|||||+|++||+
T Consensus 193 R~~LklIimSATlda~kfS~yF~~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe 272 (674)
T KOG0922|consen 193 RPDLKLIIMSATLDAEKFSEYFNNAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIE 272 (674)
T ss_pred CCCceEEEEeeeecHHHHHHHhcCCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCcccCCeEEEEcCCcc
Q 005605 294 DACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFA 373 (688)
Q Consensus 294 ~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~ 373 (688)
.+++.|.+....+..+.+. .++|+||.|+.++|.++|.+.+.| .||||+||||||||||||||.||||+|++
T Consensus 273 ~~~~~l~e~~~~~~~~~~~-~~lply~aL~~e~Q~rvF~p~p~g-------~RKvIlsTNIAETSlTI~GI~YVVDsG~v 344 (674)
T KOG0922|consen 273 AACELLRERAKSLPEDCPE-LILPLYGALPSEEQSRVFDPAPPG-------KRKVILSTNIAETSLTIDGIRYVVDSGFV 344 (674)
T ss_pred HHHHHHHHHhhhccccCcc-eeeeecccCCHHHhhccccCCCCC-------cceEEEEcceeeeeEEecceEEEEcCCce
Confidence 9999999987776666555 789999999999999999999999 99999999999999999999999999999
Q ss_pred cceeecCCCCcccceeeecchhhHHhhccccCCCCCceEEEccchhhhcccCCCCCCCcccccCcHHHHHHHHHcCCCCC
Q 005605 374 KQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDL 453 (688)
Q Consensus 374 k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~~~~~~~l~~~~~pei~r~~l~~~~L~l~~~~~~~~ 453 (688)
|++.|||..|+++|.++|+|++++.||+|||||++||+|||||++++|+. |++.++|||.|++|+.++|+||++|++|+
T Consensus 345 K~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~~-~~~~~~PEI~R~~Ls~~vL~Lkalgi~d~ 423 (674)
T KOG0922|consen 345 KQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYDK-MPLQTVPEIQRVNLSSAVLQLKALGINDP 423 (674)
T ss_pred EEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHhh-cccCCCCceeeechHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999999999999999999999999966 99999999999999999999999999999
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHcCCccCCCCcCh-hhhhcccCCCChhhhhhhhhcCCCCChHHHHHHHHHhcCCCCCC
Q 005605 454 VHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTE-MGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFV 532 (688)
Q Consensus 454 ~~f~~~~~P~~~~i~~a~~~L~~lgald~~~~lT~-lG~~~~~lpl~p~~~k~ll~~~~~~c~~~~l~i~a~ls~~~~f~ 532 (688)
..|+|+|||+++++..|++.|+.+||||++|.||. +|+.|+.||++|.++|||+.|..+||++++++|+||||++++|.
T Consensus 424 l~F~f~d~P~~~~l~~AL~~L~~lgald~~g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e~l~i~a~Lsv~~~f~ 503 (674)
T KOG0922|consen 424 LRFPFIDPPPPEALEEALEELYSLGALDDRGKLTSPLGRQMAELPLEPHLSKMLLKSSELGCSEEILTIAAMLSVQSVFS 503 (674)
T ss_pred ccCCCCCCCChHHHHHHHHHHHhcCcccCcCCcCchHHhhhhhcCCCcchhhhhhhccccCCcchhhhheeeeeccceec
Confidence 99999999999999999999999999999999998 99999999999999999999999999999999999999999999
Q ss_pred CChHHHHH-HHHHHHHhCCCCCcHHHHHHHHHHHHhcCCChhhHHhhcCCHHHHHHHHHHHHHHHHHHHHcCCcccCCCC
Q 005605 533 RPREAQKA-ADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLKLCSNDF 611 (688)
Q Consensus 533 ~~~~~~~~-~~~~~~~~~~~~sD~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~i~~qL~~~l~~~~~~~~~~~~ 611 (688)
.|.+.+.+ ++..+.+|.+.+|||+|+|++|+.|..++...+||.+||||++.|++|.++|+||.+++.+.+++..+++.
T Consensus 504 ~p~~~~~~~a~~~~~kf~~~eGDh~tlL~vy~~~~~~~~~~~wC~en~i~~r~l~~a~~ir~QL~~i~~~~~~~~~s~~~ 583 (674)
T KOG0922|consen 504 RPKDKKAEDADRKRAKFANPEGDHLTLLNVYESWKENGTSKKWCKENFINARSLKRAKDIRKQLRRILDKFGLPVSSCGG 583 (674)
T ss_pred CccchhhhhhhHHHHhhcCcccCHHHHHHHHHHHHhcCChhhHHHHhcccHHHHHHHHHHHHHHHHHHHHcCCCccCCCC
Confidence 99887666 88999999999999999999999999999999999999999999999999999999999999998866543
Q ss_pred CCcchHHHHHHHHHhccccceeEec-CCCcEEEeecCeEEEECCCCCC-CCCCCEEEEEeeeccccceeeeccccCCCC
Q 005605 612 NSRDYYVNIRKAMLAGYFMQVAHLE-RTGQYLTVKDNQVVHLHPSNCL-DHKPEWVIYNEYVLTSRNFIRTVTDVRGEW 688 (688)
Q Consensus 612 ~~~~~~~~i~~~l~~g~~~niA~~~-~~~~y~~~~~~~~~~ihpsS~l-~~~~~~vvy~e~~~t~k~y~r~vt~i~~~W 688 (688)
+.+.|++|||+|||.|+|++. ++| |+++.+|+.|+|||||++ ..+|+||||+|++.|+|.|||+||.|+++|
T Consensus 584 ----d~~~i~k~l~aGff~N~A~~~~~~~-Yrti~~~~~v~IHPSS~l~~~~p~~viy~el~~Ttk~Y~r~Vt~i~~~w 657 (674)
T KOG0922|consen 584 ----DMEKIRKCLCAGFFRNVAERDYQDG-YRTIRGGQPVYIHPSSVLFRRKPEWVIYHELLQTTKEYMRNVTAIDPEW 657 (674)
T ss_pred ----CHHHHHHHHHHHHHHHHHHhhcCCC-eEEccCCcEEEEechHHhhcCCCCEEEEEEEeecchHhHhheeecCHHH
Confidence 467899999999999999997 556 999999999999999999 456899999999999999999999999999
No 2
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.8e-144 Score=1101.22 Aligned_cols=633 Identities=81% Similarity=1.288 Sum_probs=614.0
Q ss_pred CCCCCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEc
Q 005605 43 INRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACT 122 (688)
Q Consensus 43 ~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t 122 (688)
+|+|++++++++|.+++++|..||+|.++++++..+.+++.++++|+||||||||+|++.++.. ... ...+.||
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~-~~~-----~~~v~CT 97 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYE-LSH-----LTGVACT 97 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHH-Hhh-----ccceeec
Confidence 7899999999999999999999999999999999999999999999999999999999998765 222 2458999
Q ss_pred CCchhhhccHHHHHHHhhcccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecccCcChhhHHH
Q 005605 123 QPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDV 202 (688)
Q Consensus 123 ~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEaher~~~~d~ 202 (688)
||++.+++++|.|+++++.+.+|..|||.++|+++.+.++.+.|||+|+|+|.++.++++..+++|||||||||++.+|.
T Consensus 98 Qprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDi 177 (699)
T KOG0925|consen 98 QPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDI 177 (699)
T ss_pred CchHHHHHHHHHHHHHHhccccchhccccccccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEecccccHHHHHchhcCCCeeeeCCcccccceeecCCCchhHHHHHHHHHHHHHhcCCCCCE
Q 005605 203 LFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDI 282 (688)
Q Consensus 203 ll~~l~~i~~~~~~~~vil~SAT~~~~~~~~~~~~~p~~~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~i 282 (688)
++++++++...+|++++|+||||+++.+|.+||+++|++.++| .|||+++|.+++.+||+++++.++++||..+.+|+|
T Consensus 178 LmGllk~v~~~rpdLk~vvmSatl~a~Kfq~yf~n~Pll~vpg-~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDi 256 (699)
T KOG0925|consen 178 LMGLLKEVVRNRPDLKLVVMSATLDAEKFQRYFGNAPLLAVPG-THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDI 256 (699)
T ss_pred HHHHHHHHHhhCCCceEEEeecccchHHHHHHhCCCCeeecCC-CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCE
Confidence 9999999999999999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred EEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCcccC
Q 005605 283 LVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTID 362 (688)
Q Consensus 283 LVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~ 362 (688)
|||++|.+||+.+|+.+.....+++.+.+.++++||| +.+|+++|++.+ ...++...|||+|+||+||+|+||+
T Consensus 257 lvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p--~~~~~~~~RkvVvstniaetsltid 330 (699)
T KOG0925|consen 257 LVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAP--EKRNGAYGRKVVVSTNIAETSLTID 330 (699)
T ss_pred EEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCC--cccCCCccceEEEEecchheeeeec
Confidence 9999999999999999998888888888999999999 778899999988 3456667899999999999999999
Q ss_pred CeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCCCCceEEEccchhhhcccCCCCCCCcccccCcHHHH
Q 005605 363 GIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTV 442 (688)
Q Consensus 363 ~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~~~~~~~l~~~~~pei~r~~l~~~~ 442 (688)
+|.||||.||.|+++|||+.+.++|...|||++++.||+|||||++||+||+|||++.|+.+|.+.+.|||+|++|.+++
T Consensus 331 giv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~em~~~typeilrsNL~s~V 410 (699)
T KOG0925|consen 331 GIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKEMQPQTYPEILRSNLSSTV 410 (699)
T ss_pred cEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhhcCCCCCcHHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCccccCCCCCcHHHHHHHHHHHHHcCCccCCCCcChhhhhcccCCCChhhhhhhhhcCCCCChHHHHHHH
Q 005605 443 LTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSIS 522 (688)
Q Consensus 443 L~l~~~~~~~~~~f~~~~~P~~~~i~~a~~~L~~lgald~~~~lT~lG~~~~~lpl~p~~~k~ll~~~~~~c~~~~l~i~ 522 (688)
|+||.+|++++..|+|+|||.|+++.+|++.|..++|||+||+||++|..||+||+||++||||+.+++|.|.+|+++|+
T Consensus 411 L~LKklgI~dlvhfdfmDpPAPEtLMrALE~LnYLaaLdDdGnLT~lG~imSEFPLdPqLAkmLi~S~efnCsnEiLsis 490 (699)
T KOG0925|consen 411 LQLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLAALDDDGNLTSLGEIMSEFPLDPQLAKMLIGSCEFNCSNEILSIS 490 (699)
T ss_pred HHHHhcCcccccCCcCCCCCChHHHHHHHHHhhhhhhhCCCcccchhhhhhhcCCCChHHHHHHhhcCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCCh-HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCChhhHHhhcCCHHHHHHHHHHHHHHHHHHHH
Q 005605 523 AMLSVPNCFVRPR-EAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMAR 601 (688)
Q Consensus 523 a~ls~~~~f~~~~-~~~~~~~~~~~~~~~~~sD~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~i~~qL~~~l~~ 601 (688)
||||+++.|.+|. +.++.++.++..|+|.+|||+|+||+|.+|+++..+.+||+.||||+++|++|.++|.||.++|.+
T Consensus 491 AMLsvPncFvRp~~~a~kaAdeak~~faH~dGDHlTLlnVYhAfkq~~~~~~WC~~~flN~ral~~Ad~vR~qL~rim~R 570 (699)
T KOG0925|consen 491 AMLSVPNCFVRPTSSASKAADEAKETFAHIDGDHLTLLNVYHAFKQNNEDPNWCYDNFLNYRALKSADNVRQQLLRIMDR 570 (699)
T ss_pred hcccCCccccCCChhHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCChhHHHHhcccHHHHHhHHHHHHHHHHHHHH
Confidence 9999999999998 678889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCCCCCCcchHHHHHHHHHhccccceeEecCCCcEEEeecCeEEEECCCCCCCCCCCEEEEEeeeccccceeeec
Q 005605 602 FNLKLCSNDFNSRDYYVNIRKAMLAGYFMQVAHLERTGQYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLTSRNFIRTV 681 (688)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~i~~~l~~g~~~niA~~~~~~~y~~~~~~~~~~ihpsS~l~~~~~~vvy~e~~~t~k~y~r~v 681 (688)
++++..+.++++.++..+|+|||++|||.+||+...+|.|.++.+++.|++|||+++.++|+||+|+|.+.|+++|+|.|
T Consensus 571 ~~L~~~st~F~S~~y~~nirKALvsgyFmqVA~~~~~~~Ylt~kdnqvvqLhps~~l~~~PeWVlyneFvlt~~N~ir~v 650 (699)
T KOG0925|consen 571 FNLPLCSTDFGSRDYYVNIRKALVSGYFMQVAHLERGGHYLTVKDNQVVQLHPSTCLDHKPEWVLYNEFVLTTKNFIRTV 650 (699)
T ss_pred hcCcccCCCCCChhHHHHHHHHHHHHHHHHHHhhccCCceEEEecCceEEeccccccCCCCCeEEEeeEEeeccceeeee
Confidence 99999999998888889999999999999999998888999999999999999999999999999999999999999999
Q ss_pred cccCCCC
Q 005605 682 TDVRGEW 688 (688)
Q Consensus 682 t~i~~~W 688 (688)
|.|.|||
T Consensus 651 t~I~pew 657 (699)
T KOG0925|consen 651 TDIRPEW 657 (699)
T ss_pred cccCHHH
Confidence 9999999
No 3
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.9e-142 Score=1120.56 Aligned_cols=613 Identities=51% Similarity=0.893 Sum_probs=591.7
Q ss_pred HHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHH
Q 005605 58 ILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVA 137 (688)
Q Consensus 58 ~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~ 137 (688)
..+.+.+||++..+.+++..|.++++|+|+|+||||||||+++++++.. +.. ...|.||||+|.+|++||++++
T Consensus 348 i~eqrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edG-Y~~-----~GmIGcTQPRRvAAiSVAkrVa 421 (1042)
T KOG0924|consen 348 IREQRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDG-YAD-----NGMIGCTQPRRVAAISVAKRVA 421 (1042)
T ss_pred HHHHHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcc-ccc-----CCeeeecCchHHHHHHHHHHHH
Confidence 5677889999999999999999999999999999999999999999876 544 3369999999999999999999
Q ss_pred HhhcccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecccCcChhhHHHHHHHHHHHHhcCCCc
Q 005605 138 EEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDL 217 (688)
Q Consensus 138 ~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEaher~~~~d~ll~~l~~i~~~~~~~ 217 (688)
++++..+|..|||++||++..+..+.|.|+|+|.|+|..+.+..|.+|++||+||||||++++|.++++++.+++++.++
T Consensus 422 ~EM~~~lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdl 501 (1042)
T KOG0924|consen 422 EEMGVTLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDL 501 (1042)
T ss_pred HHhCCccccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccccHHHHHchhcCCCeeeeCCcccccceeecCCCchhHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHH
Q 005605 218 KLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACR 297 (688)
Q Consensus 218 ~vil~SAT~~~~~~~~~~~~~p~~~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~ 297 (688)
++|++||||++++|++||++||.+.++||+|||++.|...|..||+++++...++||...++|+||||++|+++|+..+.
T Consensus 502 KliVtSATm~a~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~ 581 (1042)
T KOG0924|consen 502 KLIVTSATMDAQKFSNFFGNCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCD 581 (1042)
T ss_pred eEEEeeccccHHHHHHHhCCCceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCC-CCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCcccCCeEEEEcCCcccce
Q 005605 298 KITKEITNMGDQ-VGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQK 376 (688)
Q Consensus 298 ~L~~~~~~~~~~-~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~ 376 (688)
.+...+.++... ..++.|+|+||.|+++.|.++|++.+.| .|||||||||||||||||||.||||+|++|.+
T Consensus 582 ~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~-------vRK~IvATNIAETSLTi~gI~yVID~Gy~K~k 654 (1042)
T KOG0924|consen 582 IIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGG-------VRKCIVATNIAETSLTIPGIRYVIDTGYCKLK 654 (1042)
T ss_pred HHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCC-------ceeEEEeccchhhceeecceEEEEecCceeee
Confidence 998877654322 2479999999999999999999999999 99999999999999999999999999999999
Q ss_pred eecCCCCcccceeeecchhhHHhhccccCCCCCceEEEccchhhhcccCCCCCCCcccccCcHHHHHHHHHcCCCCCccc
Q 005605 377 VYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHF 456 (688)
Q Consensus 377 ~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~~~~~~~l~~~~~pei~r~~l~~~~L~l~~~~~~~~~~f 456 (688)
+|+|..|+++|.++|||++++.||+|||||++||.||||||+..|.++|.+.++|||+|++|.+++|.||++|++++..|
T Consensus 655 vyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLlLkslgV~dll~F 734 (1042)
T KOG0924|consen 655 VYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLLLKSLGVDDLLKF 734 (1042)
T ss_pred ecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHHHHHhcChhhhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcHHHHHHHHHHHHHcCCccCCCCcChhhhhcccCCCChhhhhhhhhcCCCCChHHHHHHHHHhcCCCCCCCChH
Q 005605 457 DFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPRE 536 (688)
Q Consensus 457 ~~~~~P~~~~i~~a~~~L~~lgald~~~~lT~lG~~~~~lpl~p~~~k~ll~~~~~~c~~~~l~i~a~ls~~~~f~~~~~ 536 (688)
+|+|||+.+.+..|+..|+.|||||..|.||++|+.|++||+||.++||||.|+.+||.+|+++|++|||++.+|++|.+
T Consensus 735 dFmD~Pped~~~~sly~Lw~LGAl~~~g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~dEilsIvSmLSvp~VF~rpke 814 (1042)
T KOG0924|consen 735 DFMDPPPEDNLLNSLYQLWTLGALDNTGQLTPLGRKMVEFPLDPPLSKMLLMAARMGCSDEILSIVSMLSVPAVFYRPKE 814 (1042)
T ss_pred CcCCCCHHHHHHHHHHHHHHhhccccCCccchhhHHhhhCCCCchHHHHHHHHhccCcHHHHHHHHHHhcccceeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCChhhHHhhcCCHHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCcch
Q 005605 537 AQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLKLCSNDFNSRDY 616 (688)
Q Consensus 537 ~~~~~~~~~~~~~~~~sD~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~i~~qL~~~l~~~~~~~~~~~~~~~~~ 616 (688)
..++++.++.+|..++|||||+||+|++|.+++....||.+|+|+.++|+.|+++|.||+.+|+.+++++.|+ .+
T Consensus 815 r~eead~ar~Kf~~~~sDhLTlLNVf~qw~~~~~~~~WCnd~~l~~kaL~~arevR~ql~~il~~l~~~l~S~-----~d 889 (1042)
T KOG0924|consen 815 REEEADAAREKFQVPESDHLTLLNVFNQWRKNKYSSMWCNDHYLQVKALKKAREVRRQLLEILKQLKLPLISS-----DD 889 (1042)
T ss_pred chhhhhhHHhhhcCCCCchhhHHHHHHHHHhcCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCcccC-----ch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876 36
Q ss_pred HHHHHHHHHhccccceeEecCCCcEEEeecCeEEEECCCCCCC--CCCCEEEEEeeeccccceeeeccccCCCC
Q 005605 617 YVNIRKAMLAGYFMQVAHLERTGQYLTVKDNQVVHLHPSNCLD--HKPEWVIYNEYVLTSRNFIRTVTDVRGEW 688 (688)
Q Consensus 617 ~~~i~~~l~~g~~~niA~~~~~~~y~~~~~~~~~~ihpsS~l~--~~~~~vvy~e~~~t~k~y~r~vt~i~~~W 688 (688)
|+.|++|||+|||.|+|++.+.|.|.++.+|..+++||||+|. -.|+||||||++.|+|.||++||.|+|+|
T Consensus 890 wdivrKCIcs~~fhn~Arlkg~g~YV~~~tg~~c~lHPsS~L~g~y~p~Yivyhel~~T~keym~cvT~v~~~w 963 (1042)
T KOG0924|consen 890 WDIVRKCICSAYFHNAARLKGIGEYVNLSTGIPCHLHPSSVLHGLYTPDYIVYHELLMTTKEYMQCVTSVSPEW 963 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHhccCceEEEccCCcceeecchHhhhcCCCCCeeeehHHHHhHHHHHHHHhhCCHHH
Confidence 9999999999999999999999999999999999999999993 36999999999999999999999999999
No 4
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.6e-140 Score=1104.23 Aligned_cols=618 Identities=56% Similarity=0.954 Sum_probs=595.8
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHH
Q 005605 55 YYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSR 134 (688)
Q Consensus 55 ~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~ 134 (688)
...+-+.|..||+|+.+++++.++.++++++|.|+||||||||+||+++++. +.+ .+..|.||||||++|++||.
T Consensus 254 ~~~iee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaG-ytk----~gk~IgcTQPRRVAAmSVAa 328 (902)
T KOG0923|consen 254 RESIEEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAG-YTK----GGKKIGCTQPRRVAAMSVAA 328 (902)
T ss_pred HHHHHHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcc-ccc----CCceEeecCcchHHHHHHHH
Confidence 3455667899999999999999999999999999999999999999999987 554 24459999999999999999
Q ss_pred HHHHhhcccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecccCcChhhHHHHHHHHHHHHhcC
Q 005605 135 RVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNR 214 (688)
Q Consensus 135 ~v~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEaher~~~~d~ll~~l~~i~~~~ 214 (688)
|+++++++.+|..|||+++|+++.+.++.++|||+|+|+|.++..+.|..|+++|+||||||++.+|.+++++++|.+.|
T Consensus 329 RVA~EMgvkLG~eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~R 408 (902)
T KOG0923|consen 329 RVAEEMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFR 408 (902)
T ss_pred HHHHHhCcccccccceEEEeccccCcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecccccHHHHHchhcCCCeeeeCCcccccceeecCCCchhHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHH
Q 005605 215 PDLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIED 294 (688)
Q Consensus 215 ~~~~vil~SAT~~~~~~~~~~~~~p~~~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~ 294 (688)
|+++++++|||+++++|+.||+++|++.+||+.|||+++|...|+.||+++++.++++||.+++.|+||||++|+++|+.
T Consensus 409 pdLKllIsSAT~DAekFS~fFDdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt 488 (902)
T KOG0923|consen 409 PDLKLLISSATMDAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIET 488 (902)
T ss_pred CcceEEeeccccCHHHHHHhccCCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCcccCCeEEEEcCCccc
Q 005605 295 ACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAK 374 (688)
Q Consensus 295 ~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k 374 (688)
+.+.|.+....+|.....+-++|+|++||.+.|.++|++.|+| .||||+|||||||||||+||.||||+||+|
T Consensus 489 ~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~g-------aRKVVLATNIAETSlTIdgI~yViDpGf~K 561 (902)
T KOG0923|consen 489 VKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPG-------ARKVVLATNIAETSLTIDGIKYVIDPGFVK 561 (902)
T ss_pred HHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCC-------ceeEEEeecchhhceeecCeEEEecCcccc
Confidence 9999999988899888899999999999999999999999999 899999999999999999999999999999
Q ss_pred ceeecCCCCcccceeeecchhhHHhhccccCCCCCceEEEccchhhhcccCCCCCCCcccccCcHHHHHHHHHcCCCCCc
Q 005605 375 QKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLV 454 (688)
Q Consensus 375 ~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~~~~~~~l~~~~~pei~r~~l~~~~L~l~~~~~~~~~ 454 (688)
++.|+|++||++|.++|+|++++.||+|||||++||+||||||...|.+.+...++|||+|.+|.+++|.||+|||+|+.
T Consensus 562 ~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~nvVL~LkSLGI~Dl~ 641 (902)
T KOG0923|consen 562 QNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKCFRLYTAWAYEHELEEMTVPEIQRTNLGNVVLLLKSLGIHDLI 641 (902)
T ss_pred ccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCceEEeechhhhhhhhccCCCcceeeccchhHHHHHHhcCcchhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcHHHHHHHHHHHHHcCCccCCCCcChhhhhcccCCCChhhhhhhhhcCCCCChHHHHHHHHHhcCC-CCCCC
Q 005605 455 HFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVP-NCFVR 533 (688)
Q Consensus 455 ~f~~~~~P~~~~i~~a~~~L~~lgald~~~~lT~lG~~~~~lpl~p~~~k~ll~~~~~~c~~~~l~i~a~ls~~-~~f~~ 533 (688)
+|||||||+.+++..|++.|+.|||||..|+||.+||.|++||+||.++|||+.+..++|.+++++||||||+. ++|.+
T Consensus 642 ~FdFmDpPp~etL~~aLE~LyaLGALn~~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~cs~EiitiaamlS~~~svfyr 721 (902)
T KOG0923|consen 642 HFDFLDPPPTETLLKALEQLYALGALNHLGELTKLGRRMAEFPVDPMLSKMIVASEKYKCSEEIITIAAMLSVGASVFYR 721 (902)
T ss_pred ccccCCCCChHHHHHHHHHHHHhhccccccchhhhhhhhhhcCCCHHHHhHHhhhccccchHHHHHHHHHHhcCchheec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999996 59999
Q ss_pred ChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCChhhHHhhcCCHHHHHHHHHHHHHHHHHHHHcCCcccCCCCCC
Q 005605 534 PREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLKLCSNDFNS 613 (688)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~sD~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~i~~qL~~~l~~~~~~~~~~~~~~ 613 (688)
|.+....++.+++.|....|||+++|++|+.|..++.+.+||.+|++.+++|++|.++|.||..++.+.++...++.
T Consensus 722 pk~~~v~ad~a~~~f~~~~gDhi~~L~vyn~w~es~~s~~wC~e~~iq~~sm~rardir~qL~gll~~v~~~~~s~~--- 798 (902)
T KOG0923|consen 722 PKDKQVHADNARKNFEEPVGDHIVLLNVYNQWKESKYSTQWCYENFIQYRSMKRARDIRDQLEGLLERVEIDLSSNQ--- 798 (902)
T ss_pred chhhhhhhhhhhhccCCCCcchhhhhHHHHHHhhcchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhccccccCCh---
Confidence 99998999999999999999999999999999999999999999999999999999999999999999888776643
Q ss_pred cchHHHHHHHHHhccccceeEecCCCcEEEeecCeEEEECCCCCCC-CCCCEEEEEeeeccccceeeeccccCCCC
Q 005605 614 RDYYVNIRKAMLAGYFMQVAHLERTGQYLTVKDNQVVHLHPSNCLD-HKPEWVIYNEYVLTSRNFIRTVTDVRGEW 688 (688)
Q Consensus 614 ~~~~~~i~~~l~~g~~~niA~~~~~~~y~~~~~~~~~~ihpsS~l~-~~~~~vvy~e~~~t~k~y~r~vt~i~~~W 688 (688)
.+...|++|+.+|||+|+|+...+|.|+++...+.|++||.|+++ ..|.||+|++++.|+|.|||.++.++++|
T Consensus 799 -~~~~~irk~i~aGff~h~a~l~~~g~y~tvk~~~tv~~hp~S~l~~~~P~wvvy~eLv~tske~mr~~~e~e~~W 873 (902)
T KOG0923|consen 799 -NDLDKIRKAITAGFFYHTAKLSKGGHYRTVKHPQTVSIHPNSGLFEQLPRWVVYHELVLTSKEFMRQVIEIEEEW 873 (902)
T ss_pred -HHHHHHHHHHhccccccceeccCCCcceeeccCcceeecCcccccccCCceEEEeehhcChHHHHHHHHhhhhhH
Confidence 246789999999999999999999999999999999999999994 56899999999999999999999999999
No 5
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.3e-117 Score=1037.42 Aligned_cols=601 Identities=38% Similarity=0.673 Sum_probs=548.9
Q ss_pred HHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHHh
Q 005605 60 EKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (688)
Q Consensus 60 ~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (688)
..+..||++.++++|++++.++++++|+|+|||||||++|+++++.. .. ....|+||||+++++.++|.+++++
T Consensus 68 ~~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g-~g-----~~g~I~~TQPRRlAArsLA~RVA~E 141 (1294)
T PRK11131 68 TYPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELG-RG-----VKGLIGHTQPRRLAARTVANRIAEE 141 (1294)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcC-CC-----CCCceeeCCCcHHHHHHHHHHHHHH
Confidence 34467999999999999999999999999999999999999988743 11 1235899999999999999999999
Q ss_pred hcccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecccCcChhhHHHHHHHHHHHHhcCCCcEE
Q 005605 140 MDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKL 219 (688)
Q Consensus 140 ~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEaher~~~~d~ll~~l~~i~~~~~~~~v 219 (688)
++..+|..|||.++++...+.++.|.++|+|++++++..++.+.++++|||||||||++++|+++++++.+...+|++|+
T Consensus 142 l~~~lG~~VGY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKv 221 (1294)
T PRK11131 142 LETELGGCVGYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKV 221 (1294)
T ss_pred HhhhhcceeceeecCccccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCCceE
Confidence 99999999999999998888899999999999999999999999999999999999999999999999999888889999
Q ss_pred EEecccccHHHHHchhcCCCeeeeCCcccccceeecCCCc------hhHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHH
Q 005605 220 VVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPE------RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIE 293 (688)
Q Consensus 220 il~SAT~~~~~~~~~~~~~p~~~v~g~~~~v~~~~~~~~~------~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~ 293 (688)
|+||||++.+.|++||.++|++.++|+.|||+++|.+... .+++..++..+..++ .+.+|+|||||||+++|+
T Consensus 222 ILmSATid~e~fs~~F~~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~-~~~~GdILVFLpg~~EIe 300 (1294)
T PRK11131 222 IITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELG-REGPGDILIFMSGEREIR 300 (1294)
T ss_pred EEeeCCCCHHHHHHHcCCCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHh-cCCCCCEEEEcCCHHHHH
Confidence 9999999999999999999999999999999999987643 345555555555554 356799999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCcccCCeEEEEcCCcc
Q 005605 294 DACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFA 373 (688)
Q Consensus 294 ~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~ 373 (688)
.+++.|.+. ..+.+.+++|||+|++++|.++|++ .| .+||||||||||||||||||+||||+|++
T Consensus 301 ~lae~L~~~------~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g-------~rkIIVATNIAEtSITIpgI~yVID~Gl~ 365 (1294)
T PRK11131 301 DTADALNKL------NLRHTEILPLYARLSNSEQNRVFQS--HS-------GRRIVLATNVAETSLTVPGIKYVIDPGTA 365 (1294)
T ss_pred HHHHHHHhc------CCCcceEeecccCCCHHHHHHHhcc--cC-------CeeEEEeccHHhhccccCcceEEEECCCc
Confidence 999999863 1234679999999999999999986 35 78999999999999999999999999999
Q ss_pred cceeecCCCCcccceeeecchhhHHhhccccCCCCCceEEEccchhhhcccCCCCCCCcccccCcHHHHHHHHHcCCCCC
Q 005605 374 KQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDL 453 (688)
Q Consensus 374 k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~~~~~~~l~~~~~pei~r~~l~~~~L~l~~~~~~~~ 453 (688)
|+++||+.++++.|...|+|+++|.||+|||||+++|.||+||++++|.. +++++.|||+|++|.+++|+++++|+.++
T Consensus 366 k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~~~-~~~~~~PEIlR~~L~~viL~lk~lgl~di 444 (1294)
T PRK11131 366 RISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLS-RPEFTDPEILRTNLASVILQMTALGLGDI 444 (1294)
T ss_pred cccccccccCcccCCeeecCHhhHhhhccccCCCCCcEEEEeCCHHHHHh-hhcccCCccccCCHHHHHHHHHHcCCCCc
Confidence 99999999999999999999999999999999999999999999999987 99999999999999999999999999999
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHcCCccCC-----CCcChhhhhcccCCCChhhhhhhhhcCCCCChHHHHHHHHHhcCC
Q 005605 454 VHFDFMDPPAPETLMRALEVLNYLGALDDD-----GNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVP 528 (688)
Q Consensus 454 ~~f~~~~~P~~~~i~~a~~~L~~lgald~~-----~~lT~lG~~~~~lpl~p~~~k~ll~~~~~~c~~~~l~i~a~ls~~ 528 (688)
..|+|++||+.++|..|++.|+.+||||.+ ++||++|+.|++||+||++||||+.|..++|++++++|||+||++
T Consensus 445 ~~F~fldpP~~~~i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~~evl~IaA~Lsv~ 524 (1294)
T PRK11131 445 AAFPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCVREVMIITSALSIQ 524 (1294)
T ss_pred ceeeCCCCCCHHHHHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCC
Confidence 999999999999999999999999999864 579999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc------CCChhhHHhhcCCHHHHHHHHHHHHHHHHHHHHc
Q 005605 529 NCFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQN------NEDPSWCYDNFVNHRALKSADNVRQQLVRIMARF 602 (688)
Q Consensus 529 ~~f~~~~~~~~~~~~~~~~~~~~~sD~~~~l~~~~~~~~~------~~~~~~c~~~~l~~~~l~~~~~i~~qL~~~l~~~ 602 (688)
+||..|.+.++.++.++..|.+..|||++++|+|+.|... +..++||++||||+..|+++.+++.||.++++++
T Consensus 525 dpf~~p~~~~~~a~~~~~~f~~~~sD~lt~ln~~~~~~~~~~~~s~~~~~~~C~~~~L~~~~l~e~~~i~~QL~~~~~~~ 604 (1294)
T PRK11131 525 DPRERPMDKQQASDEKHRRFADKESDFLAFVNLWNYLQEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQLRQVVKEL 604 (1294)
T ss_pred CcccCCchhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999888889999999999999999999999999753 1235799999999999999999999999999999
Q ss_pred CCcccCCCCCCcchHHHHHHHHHhccccceeEecCCC-cEEEeecCeEEEECCCCCC-CCCCCEEEEEeeeccccceeee
Q 005605 603 NLKLCSNDFNSRDYYVNIRKAMLAGYFMQVAHLERTG-QYLTVKDNQVVHLHPSNCL-DHKPEWVIYNEYVLTSRNFIRT 680 (688)
Q Consensus 603 ~~~~~~~~~~~~~~~~~i~~~l~~g~~~niA~~~~~~-~y~~~~~~~~~~ihpsS~l-~~~~~~vvy~e~~~t~k~y~r~ 680 (688)
|+...+.. .+.+.|++||++|||+|||++..++ .|.+. .+..++|||+|+| ..+|+||||+|++.|++.|||+
T Consensus 605 g~~~~~~~----~~~~~i~~all~G~~~nva~~~~~~~~y~~~-~~~~~~ihP~S~L~~~~p~wvv~~Elv~Tsr~y~r~ 679 (1294)
T PRK11131 605 GIPVNSEP----AEYREIHTALLTGLLSHIGMKDAEKQEYTGA-RNARFSIFPGSGLFKKPPKWVMVAELVETSRLWGRI 679 (1294)
T ss_pred CCCCCCCc----ccHHHHHHHHHhhcHHHHeeccCCCCeEEcc-CCcEEEEcCCccccCCCCCEEEEEeeeccChhhhhh
Confidence 98775432 3578899999999999999987764 47655 4778999999999 4578999999999999999999
Q ss_pred ccccCCCC
Q 005605 681 VTDVRGEW 688 (688)
Q Consensus 681 vt~i~~~W 688 (688)
|+.|+|+|
T Consensus 680 va~I~p~W 687 (1294)
T PRK11131 680 AARIEPEW 687 (1294)
T ss_pred hcccCHHH
Confidence 99999999
No 6
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.7e-113 Score=1007.02 Aligned_cols=601 Identities=41% Similarity=0.697 Sum_probs=550.1
Q ss_pred HHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHHh
Q 005605 60 EKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (688)
Q Consensus 60 ~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (688)
.....||++.++.+|+.++.++++++|+|+|||||||++|+++++.. ... ...|++|||+|+++.+++++++++
T Consensus 61 ~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~-~~~-----~~~I~~tQPRRlAA~svA~RvA~e 134 (1283)
T TIGR01967 61 RYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELG-RGS-----HGLIGHTQPRRLAARTVAQRIAEE 134 (1283)
T ss_pred cCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcC-CCC-----CceEecCCccHHHHHHHHHHHHHH
Confidence 34457999999999999999999999999999999999999998753 111 235889999999999999999999
Q ss_pred hcccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecccCcChhhHHHHHHHHHHHHhcCCCcEE
Q 005605 140 MDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKL 219 (688)
Q Consensus 140 ~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEaher~~~~d~ll~~l~~i~~~~~~~~v 219 (688)
++..+|..|||.+++++..+.++.|.++|+|++++.+..++.+.++++|||||+|||++++|+++++++.+...++++|+
T Consensus 135 lg~~lG~~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKl 214 (1283)
T TIGR01967 135 LGTPLGEKVGYKVRFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKI 214 (1283)
T ss_pred hCCCcceEEeeEEcCCcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988899999
Q ss_pred EEecccccHHHHHchhcCCCeeeeCCcccccceeecCCCc------hhHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHH
Q 005605 220 VVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPE------RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIE 293 (688)
Q Consensus 220 il~SAT~~~~~~~~~~~~~p~~~v~g~~~~v~~~~~~~~~------~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~ 293 (688)
|+||||++.+.|++||+++|++.++|+.|||+++|.+... .++.+..+..+..++. +.+|+|||||||+++|+
T Consensus 215 IlmSATld~~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~-~~~GdILVFLpg~~EI~ 293 (1283)
T TIGR01967 215 IITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFA-EGPGDILIFLPGEREIR 293 (1283)
T ss_pred EEEeCCcCHHHHHHHhcCCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHh-hCCCCEEEeCCCHHHHH
Confidence 9999999999999999999999999999999999986532 2455555666666554 46799999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCcccCCeEEEEcCCcc
Q 005605 294 DACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFA 373 (688)
Q Consensus 294 ~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~ 373 (688)
.+++.|.+.. .+++.+++|||+|++++|.++|+++. .+||||||||||||||||||+||||+|+.
T Consensus 294 ~l~~~L~~~~------~~~~~VlpLhg~Ls~~eQ~~vf~~~~---------~rkIVLATNIAEtSLTIpgV~yVIDsGl~ 358 (1283)
T TIGR01967 294 DAAEILRKRN------LRHTEILPLYARLSNKEQQRVFQPHS---------GRRIVLATNVAETSLTVPGIHYVIDTGTA 358 (1283)
T ss_pred HHHHHHHhcC------CCCcEEEeccCCCCHHHHHHHhCCCC---------CceEEEeccHHHhccccCCeeEEEeCCCc
Confidence 9999998641 13578999999999999999998752 57999999999999999999999999999
Q ss_pred cceeecCCCCcccceeeecchhhHHhhccccCCCCCceEEEccchhhhcccCCCCCCCcccccCcHHHHHHHHHcCCCCC
Q 005605 374 KQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDL 453 (688)
Q Consensus 374 k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~~~~~~~l~~~~~pei~r~~l~~~~L~l~~~~~~~~ 453 (688)
|.++|||.++++.|.+.|+|+++|.||+|||||+++|+||+||++++|.. +++++.|||+|++|.+++|+++++|+.++
T Consensus 359 r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~~-~~~~~~PEIlR~~L~~viL~l~~lg~~di 437 (1283)
T TIGR01967 359 RISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAPGICIRLYSEEDFNS-RPEFTDPEILRTNLASVILQMLALRLGDI 437 (1283)
T ss_pred cccccccccCccccCCccCCHHHHHHHhhhhCCCCCceEEEecCHHHHHh-hhhccCcccccccHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999999999999999999999999987 99999999999999999999999999999
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHcCCccCCC---CcChhhhhcccCCCChhhhhhhhhcCCCCChHHHHHHHHHhcCCCC
Q 005605 454 VHFDFMDPPAPETLMRALEVLNYLGALDDDG---NLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNC 530 (688)
Q Consensus 454 ~~f~~~~~P~~~~i~~a~~~L~~lgald~~~---~lT~lG~~~~~lpl~p~~~k~ll~~~~~~c~~~~l~i~a~ls~~~~ 530 (688)
..|+|++||+.+++..|++.|..+||||++| +||++|+.|+.||+||++||||+.|..++|++++++|||+||++++
T Consensus 438 ~~f~fldpP~~~~i~~A~~~L~~LGAld~~~~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl~e~l~IaA~Ls~~dp 517 (1283)
T TIGR01967 438 AAFPFIEAPDPRAIRDGFRLLEELGALDDDEAEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCLQEVLIIASALSIQDP 517 (1283)
T ss_pred ccccCCCCCCHHHHHHHHHHHHHCCCCCCCCCCccccHHHHHHhhcCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999999999998 7999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC------CChhhHHhhcCCHHHHHHHHHHHHHHHHHHHHcCC
Q 005605 531 FVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNN------EDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNL 604 (688)
Q Consensus 531 f~~~~~~~~~~~~~~~~~~~~~sD~~~~l~~~~~~~~~~------~~~~~c~~~~l~~~~l~~~~~i~~qL~~~l~~~~~ 604 (688)
|..|.+.++.++.++..|.+..|||++++|+|+.|.... ..+.||++||||+..|+++.++++||.++++++|+
T Consensus 518 ~~~p~~~~~~a~~~~~~f~~~~sD~l~~L~~~~~~~~~~~~~~~~~~~~~C~~~fL~~~~l~~~~~i~~QL~~~~~~~~~ 597 (1283)
T TIGR01967 518 RERPMEKQQAADQAHARFKDPRSDFLSRVNLWRHIEEQRQALSANQFRNACRKQYLNYLRVREWQDIYRQLTQVVKELGL 597 (1283)
T ss_pred CCCcchhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhccchHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999998888999999999999999999999999997531 23689999999999999999999999999999887
Q ss_pred cccCCCCCCcchHHHHHHHHHhccccceeEecCCCcEEEeecCeEEEECCCCCCC-CCCCEEEEEeeeccccceeeeccc
Q 005605 605 KLCSNDFNSRDYYVNIRKAMLAGYFMQVAHLERTGQYLTVKDNQVVHLHPSNCLD-HKPEWVIYNEYVLTSRNFIRTVTD 683 (688)
Q Consensus 605 ~~~~~~~~~~~~~~~i~~~l~~g~~~niA~~~~~~~y~~~~~~~~~~ihpsS~l~-~~~~~vvy~e~~~t~k~y~r~vt~ 683 (688)
...+.. .+.+.+++||++||++|||++.+.+.|.+. +|+.+.|||+|++. .+|+||||+|++.|++.|||.|++
T Consensus 598 ~~~~~~----~~~~~i~~~l~~g~~~~iA~~~~~~~y~~~-~g~~~~ihP~S~L~~~~p~wvv~~elv~t~~~~ir~~a~ 672 (1283)
T TIGR01967 598 KLNEEP----ADYDAIHKALLSGLLSQIGMKDEKHEYDGA-RGRKFHIFPGSPLFKKPPKWVMAAELVETSKLYARLVAK 672 (1283)
T ss_pred CcCCCC----ccHHHHHHHHHHhhHHHHheeCCCCcEEec-CCcEEEECCCccccCCCCCEEEEeeecccchheEeeecc
Confidence 654321 235579999999999999998877789765 57889999999994 458999999999999999999999
Q ss_pred cCCCC
Q 005605 684 VRGEW 688 (688)
Q Consensus 684 i~~~W 688 (688)
|+|+|
T Consensus 673 I~p~w 677 (1283)
T TIGR01967 673 IEPEW 677 (1283)
T ss_pred CCHHH
Confidence 99999
No 7
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=4e-113 Score=968.93 Aligned_cols=625 Identities=46% Similarity=0.737 Sum_probs=564.6
Q ss_pred CCCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCC
Q 005605 45 RWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQP 124 (688)
Q Consensus 45 ~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p 124 (688)
.+.....++...+.+..+..||++..+.+|+.++.++++++|.|+|||||||++|+++++.. +.. +..|++|||
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g-~~~-----~g~I~~tQP 102 (845)
T COG1643 29 GMDARSRSANVPDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEG-LGI-----AGKIGCTQP 102 (845)
T ss_pred hhhhhhcccccchhhhccccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhh-ccc-----CCeEEecCc
Confidence 34444556666777888999999999999999999999999999999999999999999876 321 346999999
Q ss_pred chhhhccHHHHHHHhhcccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecccCcChhhHHHHH
Q 005605 125 RRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLF 204 (688)
Q Consensus 125 ~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEaher~~~~d~ll 204 (688)
||++|.++|++++++++..+|+.|||.+||++..+.+|+|+++|+|+|+++++.+++|++|++||+||+|||++++|+++
T Consensus 103 RRlAArsvA~RvAeel~~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilL 182 (845)
T COG1643 103 RRLAARSVAERVAEELGEKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILL 182 (845)
T ss_pred hHHHHHHHHHHHHHHhCCCcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC-CcEEEEecccccHHHHHchhcCCCeeeeCCcccccceeecCCCchhH-HHHHHHHHHHHHhcCCCCCE
Q 005605 205 GLLKEVLKNRP-DLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDY-LEAAIRTVVQIHMCEPSGDI 282 (688)
Q Consensus 205 ~~l~~i~~~~~-~~~vil~SAT~~~~~~~~~~~~~p~~~v~g~~~~v~~~~~~~~~~~~-~~~~~~~l~~i~~~~~~g~i 282 (688)
+++++++..++ ++++|+||||++.++|+.||+++|++.++|+.|||+++|.+.+..++ ++..+...++++..+++|+|
T Consensus 183 gllk~~~~~rr~DLKiIimSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdI 262 (845)
T COG1643 183 GLLKDLLARRRDDLKLIIMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSI 262 (845)
T ss_pred HHHHHHHhhcCCCceEEEEecccCHHHHHHHcCCCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCE
Confidence 99999887665 79999999999999999999999999999999999999998888888 88889999999999999999
Q ss_pred EEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCcccC
Q 005605 283 LVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTID 362 (688)
Q Consensus 283 LVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~ 362 (688)
||||||.+||+.+++.|.+. .++ +.+.++||||.|+.++|.++|++.+.| +||||+||||||||||||
T Consensus 263 LvFLpG~~EI~~~~~~L~~~--~l~---~~~~i~PLy~~L~~~eQ~rvF~p~~~~-------~RKVVlATNIAETSLTI~ 330 (845)
T COG1643 263 LVFLPGQREIERTAEWLEKA--ELG---DDLEILPLYGALSAEEQVRVFEPAPGG-------KRKVVLATNIAETSLTIP 330 (845)
T ss_pred EEECCcHHHHHHHHHHHHhc--ccc---CCcEEeeccccCCHHHHHhhcCCCCCC-------cceEEEEccccccceeeC
Confidence 99999999999999999871 222 479999999999999999999999998 899999999999999999
Q ss_pred CeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCCCCceEEEccchhhhcccCCCCCCCcccccCcHHHH
Q 005605 363 GIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTV 442 (688)
Q Consensus 363 ~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~~~~~~~l~~~~~pei~r~~l~~~~ 442 (688)
||+||||+|+.|+++||+.+|++.|.++|||++++.||+|||||++||+|||||++++|.. |+.++.|||+|+||+.++
T Consensus 331 gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~~-~~~~t~PEIlrtdLs~~v 409 (845)
T COG1643 331 GIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFLA-FPEFTLPEILRTDLSGLV 409 (845)
T ss_pred CeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHHh-cccCCChhhhhcchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999995 999999999999999999
Q ss_pred HHHHHcCCC-CCccccCCCCCcHHHHHHHHHHHHHcCCccCCCCcChhhhhcccCCCChhhhhhhhhcCCCCChHHHHHH
Q 005605 443 LTLKKLGID-DLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSI 521 (688)
Q Consensus 443 L~l~~~~~~-~~~~f~~~~~P~~~~i~~a~~~L~~lgald~~~~lT~lG~~~~~lpl~p~~~k~ll~~~~~~c~~~~l~i 521 (688)
|++++||++ ++..|+|+|||+..++..|++.|+.+||||.+|.||++|+.|+.||+||++|+||+.|..++|++++++|
T Consensus 410 L~l~~~G~~~d~~~f~fld~P~~~~i~~A~~~L~~LGAld~~g~LT~lG~~ms~lpldprLA~mLl~a~~~g~~~e~~~I 489 (845)
T COG1643 410 LQLKSLGIGQDIAPFPFLDPPPEAAIQAALTLLQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATI 489 (845)
T ss_pred HHHHhcCCCCCcccCccCCCCChHHHHHHHHHHHHcCCcCCCCCCCHHHHHHHhCCCChHHHHHHHhccccCcHHHHHHH
Confidence 999999995 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCC---CCCCChHHHH---HHHHHH-HHhCC---CCCcHHHHHHHHHHHHhcC------CChhhHHhhcCCHHHH
Q 005605 522 SAMLSVPN---CFVRPREAQK---AADEAK-ARFGH---IDGDHLTLLNVYHAYKQNN------EDPSWCYDNFVNHRAL 585 (688)
Q Consensus 522 ~a~ls~~~---~f~~~~~~~~---~~~~~~-~~~~~---~~sD~~~~l~~~~~~~~~~------~~~~~c~~~~l~~~~l 585 (688)
||+||+++ .|..+.+..+ .....+ ..+.+ +.+||++++++|..|.... ...+||..++++.+.|
T Consensus 490 as~Ls~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~L 569 (845)
T COG1643 490 ASMLSEQDRESDFSRDVKLRKQRTAQDLLKRLKRRNAADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRAMLFPTKAL 569 (845)
T ss_pred HHhhccCCCcchhccccchhhHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHhhhccchhhHhcChhhhcCChhHH
Confidence 99999988 5777765544 333333 33444 6799999999999998776 5678999999999999
Q ss_pred HHHHHHHHHHHHHHHH-cCCcccCCCCCC--------------cchHHHHHHHHHhccccceeEecCCCc-EEEeecCeE
Q 005605 586 KSADNVRQQLVRIMAR-FNLKLCSNDFNS--------------RDYYVNIRKAMLAGYFMQVAHLERTGQ-YLTVKDNQV 649 (688)
Q Consensus 586 ~~~~~i~~qL~~~l~~-~~~~~~~~~~~~--------------~~~~~~i~~~l~~g~~~niA~~~~~~~-y~~~~~~~~ 649 (688)
.++..++.++...+.+ .+........+. +..|+.+.+++++|++.|++.....+. |.++.++..
T Consensus 570 ~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~ 649 (845)
T COG1643 570 SRAPWIIAALLVQTSALAGRILAAAEIDEDEWAAQHLPEHCYSEPIWDDIRGALAAGRKLNIAQLQLDGRPYVTLSDNTP 649 (845)
T ss_pred HhhHHHHHHHHHhhhccccchhhhcccCcchhhhhhhhhhhccchhHHHHhhhhhhheecceeeeeccccccccCCCCce
Confidence 9999999999887766 444332221110 114688999999999999999887754 889988999
Q ss_pred EEECCCCC-C-CCCCCEEEEEeeeccccceee-----------eccccCCCC
Q 005605 650 VHLHPSNC-L-DHKPEWVIYNEYVLTSRNFIR-----------TVTDVRGEW 688 (688)
Q Consensus 650 ~~ihpsS~-l-~~~~~~vvy~e~~~t~k~y~r-----------~vt~i~~~W 688 (688)
+.+||+|+ . ...++|++|++.+.+++.|++ .++.+..+|
T Consensus 650 v~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w 701 (845)
T COG1643 650 VFAHPSSVRLGLVLLEWIKYAEFLRTRKGYLREGRGERWPDVQTLIELLKLW 701 (845)
T ss_pred eEecchhHhhcccCcchHHHHHHHHHHHHHHhhcccccCcccchHhhhHHHh
Confidence 99999994 3 456899999999999999999 466666665
No 8
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=7.1e-112 Score=952.59 Aligned_cols=628 Identities=37% Similarity=0.618 Sum_probs=562.2
Q ss_pred CCCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCC
Q 005605 45 RWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQP 124 (688)
Q Consensus 45 ~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p 124 (688)
.+.....++.+.+++..|..||++..+++|++++.++++++|.|+||||||||+||++++.. +... ..+.|+||||
T Consensus 152 ~~~~~~~s~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~-~~~~---~~~~IicTQP 227 (924)
T KOG0920|consen 152 RQSEPKKSESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEA-IESG---AACNIICTQP 227 (924)
T ss_pred hhchhhhhhHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHH-HhcC---CCCeEEecCC
Confidence 45555677889999999999999999999999999999999999999999999999999875 3222 3556999999
Q ss_pred chhhhccHHHHHHHhhcccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecccCcChhhHHHHH
Q 005605 125 RRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLF 204 (688)
Q Consensus 125 ~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEaher~~~~d~ll 204 (688)
||++|+++|++++.+++...|..|||+++.+...+..+.+.++|.|.++|.++.++.+.++++||+||+|||++++|+++
T Consensus 228 RRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflL 307 (924)
T KOG0920|consen 228 RRISAISVAERVAKERGESLGEEVGYQVRLESKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLL 307 (924)
T ss_pred chHHHHHHHHHHHHHhccccCCeeeEEEeeecccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHH
Confidence 99999999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCcEEEEecccccHHHHHchhcCCCeeeeCCcccccceeecCCC-----------------chh------
Q 005605 205 GLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEP-----------------ERD------ 261 (688)
Q Consensus 205 ~~l~~i~~~~~~~~vil~SAT~~~~~~~~~~~~~p~~~v~g~~~~v~~~~~~~~-----------------~~~------ 261 (688)
-+++.++..+|++++|+||||++++.|++||+++|++.++|++|||..+|+++- ..+
T Consensus 308 i~lk~lL~~~p~LkvILMSAT~dae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (924)
T KOG0920|consen 308 ILLKDLLPRNPDLKVILMSATLDAELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLAR 387 (924)
T ss_pred HHHHHHhhhCCCceEEEeeeecchHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCcccccc
Confidence 999999999999999999999999999999999999999999999999887521 111
Q ss_pred --------HHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCC
Q 005605 262 --------YLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEP 333 (688)
Q Consensus 262 --------~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~ 333 (688)
..+.....+..|+.....|.||||+||.++|..+++.|.... ...+...+.++++||.|+..+|+.+|+.
T Consensus 388 ~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~--~f~~~~~~~ilplHs~~~s~eQ~~VF~~ 465 (924)
T KOG0920|consen 388 LKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNL--PFADSLKFAILPLHSSIPSEEQQAVFKR 465 (924)
T ss_pred chhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhcc--ccccccceEEEeccccCChHHHHHhcCC
Confidence 122334556667777779999999999999999999997532 1111246899999999999999999999
Q ss_pred CCCCCCCCCCCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCCCCceEE
Q 005605 334 APPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCF 413 (688)
Q Consensus 334 ~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~ 413 (688)
.+.| .||||+||||||+|||||||.||||+|++|++.|||..++++|...|+|++++.||+|||||+++|.||
T Consensus 466 pp~g-------~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy 538 (924)
T KOG0920|consen 466 PPKG-------TRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICY 538 (924)
T ss_pred CCCC-------cchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeE
Confidence 9999 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccchhhhcccCCCCCCCcccccCcHHHHHHHHHcCCCCCccc--cCCCCCcHHHHHHHHHHHHHcCCccCCCCcChhhh
Q 005605 414 RLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHF--DFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGE 491 (688)
Q Consensus 414 ~l~t~~~~~~~l~~~~~pei~r~~l~~~~L~l~~~~~~~~~~f--~~~~~P~~~~i~~a~~~L~~lgald~~~~lT~lG~ 491 (688)
+||++..|+..+..+++|||+|.+|.++||++|.+++.++..| ..++||+.+++..|+..|..+||||.+++||++|+
T Consensus 539 ~L~~~~~~~~~~~~~q~PEilR~pL~~l~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~~~L~~igaL~~~e~LT~LG~ 618 (924)
T KOG0920|consen 539 HLYTRSRYEKLMLAYQLPEILRTPLEELCLHIKVLEQGSIKAFLSKALDPPPADAVDLAIERLKQIGALDESEELTPLGL 618 (924)
T ss_pred EeechhhhhhcccccCChHHHhChHHHhhheeeeccCCCHHHHHHHhcCCCChHHHHHHHHHHHHhccccCcccchHHHH
Confidence 9999999999555599999999999999999999998887766 67999999999999999999999999999999999
Q ss_pred hcccCCCChhhhhhhhhcCCCCChHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHhc--
Q 005605 492 KMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKAADEAKARFGHI-DGDHLTLLNVYHAYKQN-- 568 (688)
Q Consensus 492 ~~~~lpl~p~~~k~ll~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~~~~~~~~-~sD~~~~l~~~~~~~~~-- 568 (688)
+++.||+||++|||++.|..|+|+|++++|||+|+.++||..|.+.++.+++++..|... .|||++++++|+.|+..
T Consensus 619 ~la~lPvd~~igK~ll~g~if~cLdp~l~iaa~Ls~k~PF~~~~~~~~~~~~~~~~~~~~~~SD~la~~~ay~~w~~~~~ 698 (924)
T KOG0920|consen 619 HLASLPVDVRIGKLLLFGAIFGCLDPALTIAAALSFKSPFVSPLGKREEADKAKKLLALDSISDHLAVVRAYAGWREILR 698 (924)
T ss_pred HHHhCCCccccchhheehhhccccchhhhHHHHhccCCCcccCCCchhHHHHHHHHhccCCcchHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999888764 59999999999999875
Q ss_pred ---CCChhhHHhhcCCHHHHHHHHHHHHHHHHHHHHcCCcccCC-----C---CCCcchHHHHHHHHHhccccceeEecC
Q 005605 569 ---NEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLKLCSN-----D---FNSRDYYVNIRKAMLAGYFMQVAHLER 637 (688)
Q Consensus 569 ---~~~~~~c~~~~l~~~~l~~~~~i~~qL~~~l~~~~~~~~~~-----~---~~~~~~~~~i~~~l~~g~~~niA~~~~ 637 (688)
....+||++|||+..+|+++..++.|+.+.+.+.|+...+. + ...+.+.+.++++||+|||||+|+...
T Consensus 699 ~~~~~~~~fc~~~fLs~~~l~~i~~l~~q~~~~l~~~g~~~~~~~~~~~~~~~n~~s~~~~~iravl~a~lyP~i~~~~~ 778 (924)
T KOG0920|consen 699 SGPSAEKDFCEENFLSSNTLQEISSLRVQFLELLSDIGLIPISSTAALTDSECNHNSQNPELVRAVLCAGLYPNIAFVRR 778 (924)
T ss_pred ccchHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhcccccCCcccccCchhhhhcCCCHHHHHHHHhccCCCceeeeec
Confidence 24578999999999999999999999999999998866431 1 112356788999999999999999764
Q ss_pred ---CC---cEEEeecCeEEEECCCCCCC----CCCCEEEEEeeecccc-ceeeeccccCC
Q 005605 638 ---TG---QYLTVKDNQVVHLHPSNCLD----HKPEWVIYNEYVLTSR-NFIRTVTDVRG 686 (688)
Q Consensus 638 ---~~---~y~~~~~~~~~~ihpsS~l~----~~~~~vvy~e~~~t~k-~y~r~vt~i~~ 686 (688)
.. .|.+-.+ ..+.|||+|++. ...+|++|+|.+.|++ .|+|++|.|.+
T Consensus 779 ~~~~~~~~~~~~~~~-~~v~i~~~sv~~~~~~~~~p~l~~~~k~~t~~~~~~rd~T~v~~ 837 (924)
T KOG0920|consen 779 MEPKSKSVTFVTKAD-GRVIIHPSSVNEQSTGFQSPFLVFPEKVKSTRLVSLRDTTSVSS 837 (924)
T ss_pred ccCCcCcceeecCCc-eeEEEecchhhccccccCCcceEEeeecccCCcceeeecCCCCc
Confidence 21 2433333 369999999982 2245999999999999 99999999875
No 9
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-108 Score=881.57 Aligned_cols=625 Identities=40% Similarity=0.653 Sum_probs=556.3
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHH
Q 005605 55 YYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSR 134 (688)
Q Consensus 55 ~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~ 134 (688)
-.++.+.|-.||+..-.++|+++|..+.+|||+|+||||||||+||++++.. +..........|..|||||.+++..|+
T Consensus 245 ~~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAG-f~s~~~~~~gmIGITqPRRVAaiamAk 323 (1172)
T KOG0926|consen 245 PAEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAG-FASEQSSSPGMIGITQPRRVAAIAMAK 323 (1172)
T ss_pred cHHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcc-cCCccCCCCCeeeecCchHHHHHHHHH
Confidence 3467788999999999999999999999999999999999999999999987 554332324468999999999999999
Q ss_pred HHHHhhcccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecccCcChhhHHHHHHHHHHHHhcC
Q 005605 135 RVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNR 214 (688)
Q Consensus 135 ~v~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEaher~~~~d~ll~~l~~i~~~~ 214 (688)
|++.+++. .+..|||++||+......+.|.+||+|.|++.+..+-+|..|++|||||||||++++|.++++|.++...|
T Consensus 324 RVa~EL~~-~~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR 402 (1172)
T KOG0926|consen 324 RVAFELGV-LGSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLR 402 (1172)
T ss_pred HHHHHhcc-CccceeEEEEeccccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHH
Confidence 99999998 89999999999999999999999999999999999999999999999999999999999999999987543
Q ss_pred ----------CCcEEEEecccccHHHHH---chhc-CCCeeeeCCcccccceeecCCCchhHHHHHHHHHHHHHhcCCCC
Q 005605 215 ----------PDLKLVVMSATLEAEKFQ---GYFY-GAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSG 280 (688)
Q Consensus 215 ----------~~~~vil~SAT~~~~~~~---~~~~-~~p~~~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g 280 (688)
..+++|+||||+.+..|. ..|. ..|++.++.|.|||.+||......||+..+.+..+.||.+-++|
T Consensus 403 ~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G 482 (1172)
T KOG0926|consen 403 QKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPG 482 (1172)
T ss_pred HHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEEEeccCCCchHHHHHHHHHHHHhhcCCCC
Confidence 257999999999988887 3454 47799999999999999999988999999999999999999999
Q ss_pred CEEEecCcHHHHHHHHHHHHHHHhh-------------------------------------------------------
Q 005605 281 DILVFLTGEEEIEDACRKITKEITN------------------------------------------------------- 305 (688)
Q Consensus 281 ~iLVFl~~~~~i~~~~~~L~~~~~~------------------------------------------------------- 305 (688)
.||||++|+.||+.+++.|++.+..
T Consensus 483 ~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~ 562 (1172)
T KOG0926|consen 483 GILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFA 562 (1172)
T ss_pred cEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccch
Confidence 9999999999999999999877200
Q ss_pred --------c--------C-------------------CCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEE
Q 005605 306 --------M--------G-------------------DQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVV 350 (688)
Q Consensus 306 --------~--------~-------------------~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlv 350 (688)
+ | ...+.+.|+||||-|+.++|.++|+..+.| .|-+||
T Consensus 563 ~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g-------~RLcVV 635 (1172)
T KOG0926|consen 563 SLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKG-------ERLCVV 635 (1172)
T ss_pred hhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCC-------ceEEEE
Confidence 0 0 013368899999999999999999999999 899999
Q ss_pred ecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCCCCceEEEccchhhhcccCCCCCC
Q 005605 351 STNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTY 430 (688)
Q Consensus 351 aTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~~~~~~~l~~~~~ 430 (688)
||||||||||||||+||||||++|.+.||..+|++++.+.|+|++++-||+|||||++||+|||||+..-|.+++..+..
T Consensus 636 aTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLYSSAVf~~~Fe~fS~ 715 (1172)
T KOG0926|consen 636 ATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLYSSAVFSNDFEEFSL 715 (1172)
T ss_pred eccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCCceeehhhhHHhhcchhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred CcccccCcHHHHHHHHHcCCCCCccccCCCCCcHHHHHHHHHHHHHcCCccCCCCcChhhhhcccCCCChhhhhhhhhcC
Q 005605 431 PEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESP 510 (688)
Q Consensus 431 pei~r~~l~~~~L~l~~~~~~~~~~f~~~~~P~~~~i~~a~~~L~~lgald~~~~lT~lG~~~~~lpl~p~~~k~ll~~~ 510 (688)
|||++.|.++++|++|+|+|.++.+|+|++||.+.+++.|.+.|..|||||.+|.||++|+.||.||+.|++||||+.+.
T Consensus 716 PEIlk~Pve~lvLqMKsMnI~kVvnFPFPtpPd~~~L~~Aer~L~~LgALd~~g~lT~lGk~mS~FPlsPrfsKmL~~~~ 795 (1172)
T KOG0926|consen 716 PEILKKPVESLVLQMKSMNIDKVVNFPFPTPPDRSALEKAERRLKALGALDSNGGLTKLGKAMSLFPLSPRFSKMLATSD 795 (1172)
T ss_pred HHHhhCcHHHHHHHHHhcCccceecCCCCCCccHHHHHHHHHHHHHhccccccCCcccccchhcccccChhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHhcCCCCCCCCh--------------H------------------HHHHHHHHHHHhCCCCCcHHHH
Q 005605 511 KYNCSNEILSISAMLSVPNCFVRPR--------------E------------------AQKAADEAKARFGHIDGDHLTL 558 (688)
Q Consensus 511 ~~~c~~~~l~i~a~ls~~~~f~~~~--------------~------------------~~~~~~~~~~~~~~~~sD~~~~ 558 (688)
+.+|+.-.+.++++||+..+|+.-. + .+.....++.+|....||-+++
T Consensus 796 Q~~~lpy~i~lvsaLsv~e~~i~~~~ll~n~~~r~~~~eE~d~~~~de~~~d~~~K~~rr~~~~aa~~rf~~l~sd~l~L 875 (1172)
T KOG0926|consen 796 QHNLLPYNIALVSALSVYEVLIVAASLLPNPLIREFEPEEKDLIKDDETVEDKELKKRRREKSKAARSRFSNLDSDALVL 875 (1172)
T ss_pred hhcchhHHHHHHHHHhccchhhhhhhcccccccccCCcchhhccccccccccHHHHHHHHHHHHHHHhhhccCCccHHHH
Confidence 9999999999999999988775321 0 0111223566677778999999
Q ss_pred HHHHHHHHhcCCChhhHHhhcCCHHHHHHHHHHHHHHHHHHHHcCCcccCC------CCCCcchHHHHHHHHHhccccce
Q 005605 559 LNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLKLCSN------DFNSRDYYVNIRKAMLAGYFMQV 632 (688)
Q Consensus 559 l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~i~~qL~~~l~~~~~~~~~~------~~~~~~~~~~i~~~l~~g~~~ni 632 (688)
|.+.-++..+.+...||..|||..++|.++.++|+||..++.+.++..... ..........++..|||||.++|
T Consensus 876 l~Av~a~ey~~~~~rfc~~ngLr~Kam~Ev~KLR~QL~~lv~~~~i~~v~~~~d~~l~ppt~~q~~lLrQ~i~Ag~~DrV 955 (1172)
T KOG0926|consen 876 LSAVSAAEYAENGMRFCEANGLRLKAMEEVRKLRKQLTNLVNHGNIQDVEKSWDLTLKPPTDTQAKLLRQMICAGFADRV 955 (1172)
T ss_pred HHHHHHHHhhhhcchhHHhcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 999999888877778999999999999999999999999987554432111 11112334568899999999999
Q ss_pred eEecCCCcEEEeecCeEEEECCCCCC-CCCCCEEEEEeeeccccceeee-ccccCCCC
Q 005605 633 AHLERTGQYLTVKDNQVVHLHPSNCL-DHKPEWVIYNEYVLTSRNFIRT-VTDVRGEW 688 (688)
Q Consensus 633 A~~~~~~~y~~~~~~~~~~ihpsS~l-~~~~~~vvy~e~~~t~k~y~r~-vt~i~~~W 688 (688)
|++.+--.|-+..-+.+++|||+|++ ...|+||+|.|++.|+..||.. ++.|+|+|
T Consensus 956 Ark~~~~~y~~~~i~~~~fl~~~svl~~~ape~viY~el~~~~~~~~~~~v~~v~pew 1013 (1172)
T KOG0926|consen 956 ARKVDATEYDAAKIQEPVFLHRWSVLINSAPELVIYQELLLTNRPYMHGGVTAVRPEW 1013 (1172)
T ss_pred HHhccccccchhhhcCceeeeehhhhhccCccceehhhhhhcCCcccccceEEEchHH
Confidence 99765555766555668999999999 6679999999999998876655 99999999
No 10
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.6e-92 Score=813.14 Aligned_cols=562 Identities=31% Similarity=0.478 Sum_probs=483.5
Q ss_pred CCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhcccc
Q 005605 65 LPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTI 144 (688)
Q Consensus 65 lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~ 144 (688)
||++.+..+|+.++.++++++++|+|||||||++++++++.. .. ...+++++|+++++.+++++++++++..+
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~-~~------~~~ilvlqPrR~aA~qiA~rva~~~~~~~ 73 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAP-GI------GGKIIMLEPRRLAARSAAQRLASQLGEAV 73 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhh-cc------CCeEEEEeCcHHHHHHHHHHHHHHhCCCc
Confidence 799999999999999999999999999999999999999764 11 23589999999999999999999999999
Q ss_pred cceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecccCcChhhHHHHHHHHHHHHh-cCCCcEEEEec
Q 005605 145 GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMS 223 (688)
Q Consensus 145 ~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEaher~~~~d~ll~~l~~i~~-~~~~~~vil~S 223 (688)
+..|||.++++...+.+++|.++|+|++++++..++.+.++++|||||+|||++++|+.+.+++++.+ .++++|+|+||
T Consensus 74 g~~VGy~vr~~~~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmS 153 (819)
T TIGR01970 74 GQTVGYRVRGENKVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMS 153 (819)
T ss_pred CcEEEEEEccccccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEe
Confidence 99999999998887788999999999999999988889999999999999999999999888888765 45689999999
Q ss_pred ccccHHHHHchhcCCCeeeeCCcccccceeecCCCchhHHHHHH-HHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHH
Q 005605 224 ATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAI-RTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKE 302 (688)
Q Consensus 224 AT~~~~~~~~~~~~~p~~~v~g~~~~v~~~~~~~~~~~~~~~~~-~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~ 302 (688)
||++.+.+++||.++|++.++|+.|||+++|...+..+++...+ ..+..++. ...|+|||||||+++|+.+++.|.+.
T Consensus 154 ATl~~~~l~~~l~~~~vI~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~-~~~g~iLVFlpg~~eI~~l~~~L~~~ 232 (819)
T TIGR01970 154 ATLDGERLSSLLPDAPVVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALA-SETGSILVFLPGQAEIRRVQEQLAER 232 (819)
T ss_pred CCCCHHHHHHHcCCCcEEEecCcceeeeeEEeecchhhhHHHHHHHHHHHHHH-hcCCcEEEEECCHHHHHHHHHHHHhh
Confidence 99999899999999999999999999999999876655544333 33444433 35799999999999999999999864
Q ss_pred HhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCC
Q 005605 303 ITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRV 382 (688)
Q Consensus 303 ~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~ 382 (688)
. + .++.+++|||+|++++|.++|++|++| .+||||||||||||||||||+||||+|++|.++|||.+
T Consensus 233 ~---~---~~~~v~pLHg~L~~~eq~~~~~~~~~G-------~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~ 299 (819)
T TIGR01970 233 L---D---SDVLICPLYGELSLAAQDRAIKPDPQG-------RRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKT 299 (819)
T ss_pred c---C---CCcEEEEecCCCCHHHHHHHHhhcccC-------CeEEEEecchHhhcccccCceEEEEcCccccccccccc
Confidence 2 1 368999999999999999999999999 89999999999999999999999999999999999999
Q ss_pred CcccceeeecchhhHHhhccccCCCCCceEEEccchhhhcccCCCCCCCcccccCcHHHHHHHHHcCCCCCccccCCCCC
Q 005605 383 RVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPP 462 (688)
Q Consensus 383 ~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~~~~~~~l~~~~~pei~r~~l~~~~L~l~~~~~~~~~~f~~~~~P 462 (688)
|++.|.++|+|+++|+||+|||||+++|.||+||+++++.. |.++..|||+|++|++++|+++++|+.++..|+|++||
T Consensus 300 g~~~L~~~~iSkasa~QR~GRAGR~~~G~cyrL~t~~~~~~-l~~~~~PEI~r~~L~~~~L~l~~~g~~~~~~~~~l~~P 378 (819)
T TIGR01970 300 GITRLETVRISQASATQRAGRAGRLEPGVCYRLWSEEQHQR-LPAQDEPEILQADLSGLALELAQWGAKDPSDLRWLDAP 378 (819)
T ss_pred CCceeeEEEECHHHHHhhhhhcCCCCCCEEEEeCCHHHHHh-hhcCCCcceeccCcHHHHHHHHHcCCCChhhCCCCCCc
Confidence 99999999999999999999999999999999999999987 99999999999999999999999999998899999999
Q ss_pred cHHHHHHHHHHHHHcCCccCCCCcChhhhhcccCCCChhhhhhhhhcCCCCChHHHHHHHHHhcCCCCCCCChHHHHHHH
Q 005605 463 APETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKAAD 542 (688)
Q Consensus 463 ~~~~i~~a~~~L~~lgald~~~~lT~lG~~~~~lpl~p~~~k~ll~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~ 542 (688)
+.+++..|++.|..+||||++|+||++|+.|+.||+||++||||+.|..++|.+++++|||+|++++++..
T Consensus 379 ~~~~i~~a~~~L~~lgald~~~~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~~~~~~~iaa~ls~~~~~~~--------- 449 (819)
T TIGR01970 379 PSVALAAARQLLQRLGALDAQGRLTAHGKAMAALGCHPRLAAMLLSAHSTGLAALACDLAALLEERGLPRQ--------- 449 (819)
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCcCHHHHHHHhcCCCHHHHHHHHHhhhcCCHHHHHHHHHHHcCCCCCCC---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999986531
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHhcCCChhhHHhhcCCHHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCcchHHHHHH
Q 005605 543 EAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLKLCSNDFNSRDYYVNIRK 622 (688)
Q Consensus 543 ~~~~~~~~~~sD~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~i~~qL~~~l~~~~~~~~~~~~~~~~~~~~i~~ 622 (688)
..+|....+..++.. . ...| ..+.+..+|+.+.+ +.......... + ..+..
T Consensus 450 --------~~~d~~~~~~~~~~~---~--~~~~----------~~~~~~~~~~~~~~---~~~~~~~~~~~--~-~~~g~ 500 (819)
T TIGR01970 450 --------GGADLMNRLHRLQQG---R--QGRG----------QRAQQLAKKLRRRL---RFSQADSGAIA--S-HALGL 500 (819)
T ss_pred --------CcccHHHHHHHHhhc---c--hhhH----------HHHHHHHHHHHHHh---CcCcCCCcccc--c-chHhH
Confidence 136876666655421 0 1112 22344445554432 21101000000 0 12666
Q ss_pred HHHhccccceeEecCC-CcEEEeecCeEEEECCCCCCCCCCCEEEEEeeeccc---cceeeeccccCCCC
Q 005605 623 AMLAGYFMQVAHLERT-GQYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLTS---RNFIRTVTDVRGEW 688 (688)
Q Consensus 623 ~l~~g~~~niA~~~~~-~~y~~~~~~~~~~ihpsS~l~~~~~~vvy~e~~~t~---k~y~r~vt~i~~~W 688 (688)
+++.||+++||+++++ +.| .+.+|+.+.++|.|.+... +|+|..++..++ ...++.+++|+++|
T Consensus 501 lla~a~pdria~~r~~~~~y-~l~~G~~~~l~~~~~l~~~-~~l~~a~~~~~~~~~~~~i~~a~~i~~~~ 568 (819)
T TIGR01970 501 LLALAFPDRIAKRRGQPGRY-QLANGRGAVLSAEDALARE-PWLVAADLGEGQGKTAARILLAAPVDEAL 568 (819)
T ss_pred HHhhhChHhheeccCCCCeE-ECCCCCeeEeCCCCcccCC-CeEEEEEeeccCCccccceeeeccCCHHH
Confidence 8899999999997755 457 6889999999999998654 999999997442 35788999999887
No 11
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=4.1e-92 Score=813.75 Aligned_cols=554 Identities=32% Similarity=0.488 Sum_probs=477.8
Q ss_pred cCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhcc
Q 005605 63 KSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (688)
Q Consensus 63 ~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (688)
..||++.+..+|+.++.+++++++.|+|||||||++++++++... . ...+++++|+|+++.+++++++++++.
T Consensus 2 ~~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~-~------~~~ilvlqPrR~aA~qia~rva~~l~~ 74 (812)
T PRK11664 2 SSLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG-I------NGKIIMLEPRRLAARNVAQRLAEQLGE 74 (812)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC-c------CCeEEEECChHHHHHHHHHHHHHHhCc
Confidence 359999999999999999999999999999999999999997641 1 125889999999999999999999999
Q ss_pred cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecccCcChhhHHHHHHHHHHHHhc-CCCcEEEE
Q 005605 143 TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKN-RPDLKLVV 221 (688)
Q Consensus 143 ~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEaher~~~~d~ll~~l~~i~~~-~~~~~vil 221 (688)
.++..|||.++++.....+++|.++|+|++++++..++.+.++++|||||+|||++++|+++++++++.+. ++++|+|+
T Consensus 75 ~~g~~VGy~vr~~~~~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlil 154 (812)
T PRK11664 75 KPGETVGYRMRAESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLI 154 (812)
T ss_pred ccCceEEEEecCccccCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEE
Confidence 99999999999988777888999999999999999888899999999999999999999999988887653 56899999
Q ss_pred ecccccHHHHHchhcCCCeeeeCCcccccceeecCCCchhHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHH
Q 005605 222 MSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITK 301 (688)
Q Consensus 222 ~SAT~~~~~~~~~~~~~p~~~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~ 301 (688)
||||++.+.+++||.+++++.++|+.|||+++|...+..++++..+...+..+.....|++|||+||+++|+.+++.|.+
T Consensus 155 mSATl~~~~l~~~~~~~~~I~~~gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~ 234 (812)
T PRK11664 155 MSATLDNDRLQQLLPDAPVIVSEGRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLAS 234 (812)
T ss_pred EecCCCHHHHHHhcCCCCEEEecCccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHH
Confidence 99999998999999999999999999999999998877666654433322233334579999999999999999999986
Q ss_pred HHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCcccCCeEEEEcCCcccceeecCC
Q 005605 302 EITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPR 381 (688)
Q Consensus 302 ~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~ 381 (688)
.. + .++.+.+|||+|++++|++++++|++| ++||||||||||||||||||+||||+|++|..+|||.
T Consensus 235 ~~---~---~~~~v~~Lhg~l~~~eq~~~~~~~~~G-------~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~ 301 (812)
T PRK11664 235 RV---A---SDVLLCPLYGALSLAEQQKAILPAPAG-------RRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPK 301 (812)
T ss_pred hc---c---CCceEEEeeCCCCHHHHHHHhccccCC-------CeEEEEecchHHhcccccCceEEEECCCccccccccc
Confidence 32 1 368899999999999999999999999 8999999999999999999999999999999999999
Q ss_pred CCcccceeeecchhhHHhhccccCCCCCceEEEccchhhhcccCCCCCCCcccccCcHHHHHHHHHcCCCCCccccCCCC
Q 005605 382 VRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDP 461 (688)
Q Consensus 382 ~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~~~~~~~l~~~~~pei~r~~l~~~~L~l~~~~~~~~~~f~~~~~ 461 (688)
+|++.|.++|+|+++|+||+|||||+++|.||+||+++++.. +.++..|||+|+||++++|.++++|+.++..|+|+||
T Consensus 302 ~g~~~L~~~~iSkasa~QR~GRaGR~~~G~cyrL~t~~~~~~-l~~~~~PEI~r~dL~~~~L~l~~~g~~~~~~~~~ld~ 380 (812)
T PRK11664 302 TGLTRLVTQRISQASMTQRAGRAGRLEPGICLHLYSKEQAER-AAAQSEPEILHSDLSGLLLELLQWGCHDPAQLSWLDQ 380 (812)
T ss_pred CCcceeEEEeechhhhhhhccccCCCCCcEEEEecCHHHHhh-CccCCCCceeccchHHHHHHHHHcCCCCHHhCCCCCC
Confidence 999999999999999999999999999999999999999987 9999999999999999999999999999889999999
Q ss_pred CcHHHHHHHHHHHHHcCCccCCCCcChhhhhcccCCCChhhhhhhhhcCCCCChH--HHHHHHHHhcCCCCCCCChHHHH
Q 005605 462 PAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSN--EILSISAMLSVPNCFVRPREAQK 539 (688)
Q Consensus 462 P~~~~i~~a~~~L~~lgald~~~~lT~lG~~~~~lpl~p~~~k~ll~~~~~~c~~--~~l~i~a~ls~~~~f~~~~~~~~ 539 (688)
|++.++++|++.|..+||||++|+||++|+.|++||+||++||||+.|..++|.. .++.+||+|+.++. ..
T Consensus 381 P~~~~~~~A~~~L~~lgald~~g~lT~~G~~m~~lp~~Prla~~ll~a~~~~~~~l~~a~~laall~e~~~--~~----- 453 (812)
T PRK11664 381 PPAAALAAAKRLLQQLGALDGQGRLTARGRKMAALGNDPRLAAMLVAAKEDDEAALATAAKLAAILEEPPR--SG----- 453 (812)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCcCHHHHHHHhcCCchHHHHHHHHHHhcCchhhHHHHHHHHhhccCCC--CC-----
Confidence 9999999999999999999999999999999999999999999999999998764 67778888877632 10
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCChhhHHhhcCCHHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCcchHHH
Q 005605 540 AADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLKLCSNDFNSRDYYVN 619 (688)
Q Consensus 540 ~~~~~~~~~~~~~sD~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~i~~qL~~~l~~~~~~~~~~~~~~~~~~~~ 619 (688)
.+|....+..+. ..|+ +.+.++.+|+.... + .. +.+.
T Consensus 454 ------------~~d~~~~l~~~~--------~~~~----------~~~~~~~~~~~~~~---~----~~------~~~~ 490 (812)
T PRK11664 454 ------------SSDLGVALSRKQ--------PHWQ----------QRAQQLLKRLNVRG---G----EA------DSSL 490 (812)
T ss_pred ------------cccHHHHHHHHH--------HHHH----------HHHHHHHHHHHhhc---c----cC------ChHH
Confidence 245433333222 1332 33444555543311 1 10 1234
Q ss_pred HHHHHHhccccceeEecCCCcEEEeecCeEEEECCCCCCCCCCCEEEEEeeeccc-c--ceeeeccccCCCC
Q 005605 620 IRKAMLAGYFMQVAHLERTGQYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLTS-R--NFIRTVTDVRGEW 688 (688)
Q Consensus 620 i~~~l~~g~~~niA~~~~~~~y~~~~~~~~~~ihpsS~l~~~~~~vvy~e~~~t~-k--~y~r~vt~i~~~W 688 (688)
+.+||+.||+++||++++.+.|..+.+|+.+.+||+|.+.. .+|+|+.|++.++ + ..++.+++|+++|
T Consensus 491 ~~~~la~aypdriA~~r~~~~~~~l~~G~~a~l~~~~~l~~-~~~lv~a~~~~~~~~~~~ri~~a~~l~~~~ 561 (812)
T PRK11664 491 IAPLLALAFPDRIARRRGQDGRYQLANGMGAMLDADDALSR-HEWLIAPLLLQGSASPDARILLALPLDIDE 561 (812)
T ss_pred HHHHHHHHCHHHHhhhcCCCCeEEeeCCCeEEECCCCcccC-CCeEEEEEhhccCccccceeeEeeccCHHH
Confidence 88899999999999977654445788999999999999965 4999999997653 3 5688999999987
No 12
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=100.00 E-value=1.4e-64 Score=547.60 Aligned_cols=619 Identities=29% Similarity=0.471 Sum_probs=511.7
Q ss_pred ChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhcc
Q 005605 52 SQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMS 131 (688)
Q Consensus 52 ~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~ 131 (688)
.+.+.++++.+..+|+.....+|++++.++++++|.|+|||||||++.+++++.. +.+.... -..++.+||+++.+++
T Consensus 364 d~e~~~~~a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~-~~ns~g~-~~na~v~qprrisais 441 (1282)
T KOG0921|consen 364 DEALDKITAQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESF-LENSNGA-SFNAVVSQPRRISAIS 441 (1282)
T ss_pred ccchhhhhhhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHH-hhccccc-cccceeccccccchHH
Confidence 3456778899999999999999999999999999999999999999999999986 3331111 2246789999999999
Q ss_pred HHHHHHHhhcccccceeceeeeeccccc-ccccccccCHHHHHHHHhccccccCCcEEeecccCcChhhHHHHHHHHHHH
Q 005605 132 VSRRVAEEMDVTIGEEVGYSIRFEDCSS-ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEV 210 (688)
Q Consensus 132 v~~~v~~~~~~~~~~~vg~~~~~~~~~~-~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEaher~~~~d~ll~~l~~i 210 (688)
++++++.+++..+++.+||.+|+++... ....|.++|-|.+++.+-+. +..++++|+||.|+|..++|+++-+++.+
T Consensus 442 iaerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e~g--lrg~sh~i~deiherdv~~dfll~~lr~m 519 (1282)
T KOG0921|consen 442 LAERVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMMENG--LRGISHVIIDEIHERDVDTDFVLIVLREM 519 (1282)
T ss_pred HHHHHHHhhHHhhcccccccccccccccccccceeeeccchhhhhhhhc--ccccccccchhhhhhccchHHHHHHHHhh
Confidence 9999999999999999999999998776 45667899999999987654 88999999999999999999999999999
Q ss_pred HhcCCCcEEEEecccccHHHHHchhcCCCeeeeCCcccccceeecCC--------------------------CchhH--
Q 005605 211 LKNRPDLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQE--------------------------PERDY-- 262 (688)
Q Consensus 211 ~~~~~~~~vil~SAT~~~~~~~~~~~~~p~~~v~g~~~~v~~~~~~~--------------------------~~~~~-- 262 (688)
....+++.+++||||++.+.|..||..+|.+.+.|+++|++.+|+.. +..++
T Consensus 520 ~~ty~dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~ 599 (1282)
T KOG0921|consen 520 ISTYRDLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGR 599 (1282)
T ss_pred hccchhhhhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhccc
Confidence 99999999999999999999999999999999999999998877531 00000
Q ss_pred --------------------------HHHHHHH-HHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEE
Q 005605 263 --------------------------LEAAIRT-VVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKV 315 (688)
Q Consensus 263 --------------------------~~~~~~~-l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v 315 (688)
...+.+. +..+....-+|-||||+|++++|..++..|.... ...+...+.+
T Consensus 600 n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~--~fg~~~~y~i 677 (1282)
T KOG0921|consen 600 NMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQ--EFGQANKYEI 677 (1282)
T ss_pred ccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhh--hhccchhccc
Confidence 0011111 2233333447899999999999999999987642 2223457889
Q ss_pred EEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchh
Q 005605 316 VPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKA 395 (688)
Q Consensus 316 ~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~ 395 (688)
+++|+.+..++|.++|++.+.| ..|+|++||+||++|||++++||||.+..+.+.|-....+....++|.|+-
T Consensus 678 lp~Hsq~~~~eqrkvf~~~p~g-------v~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~skt 750 (1282)
T KOG0921|consen 678 LPLHSQLTSQEQRKVFEPVPEG-------VTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKT 750 (1282)
T ss_pred ccchhhcccHhhhhccCccccc-------ccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeeccccc
Confidence 9999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred hHHhhccccCCCCCceEEEccchhhhcccCCCCCCCcccccCcHHHHHHHHHcCCCCCccc--cCCCCCcHHHHHHHHHH
Q 005605 396 SAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHF--DFMDPPAPETLMRALEV 473 (688)
Q Consensus 396 ~~~qR~GRaGR~~~G~~~~l~t~~~~~~~l~~~~~pei~r~~l~~~~L~l~~~~~~~~~~f--~~~~~P~~~~i~~a~~~ 473 (688)
+-+||.||+||.++|.||++.+...|+. +..+-.||+.|.++.+..|.+|.+....+..| ..+.||+.+++..+-..
T Consensus 751 n~eqr~gr~grvR~G~~f~lcs~arF~~-l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~ 829 (1282)
T KOG0921|consen 751 NLEQRKGRAGRVRPGFCFHLCSRARFEA-LEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAV 829 (1282)
T ss_pred chHhhcccCceecccccccccHHHHHHH-HHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHH
Confidence 9999999999999999999999999987 99999999999999999999998876666555 67899999999999999
Q ss_pred HHHcCCccCCCCcChhhhhcccCCCChhhhhhhhhcCCCCChHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHhCC-CC
Q 005605 474 LNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKAADEAKARFGH-ID 552 (688)
Q Consensus 474 L~~lgald~~~~lT~lG~~~~~lpl~p~~~k~ll~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~~~~~~~-~~ 552 (688)
|..++++|.++.+|++|+.++.+|+.|+++||++.+..++|.+-|+.+|+.++...+|..-..........++.|++ ..
T Consensus 830 l~~m~~ld~n~elt~lg~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~~~~~~~~~~~rl~g~q~~~~g~kf 909 (1282)
T KOG0921|consen 830 LREMGALDANDELTPLGRMLARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFPTPFVPREKHHSRLSGTQRKFAGNKF 909 (1282)
T ss_pred HHHhhhhhccCcccchhhhhhhccCcccccceeeechhhccchhhhhhhcccccccccccccccccccccchhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999887776543322233333444444 34
Q ss_pred -----CcHHHHHHHHHHHHhcCCChhhHHhhcCCHHHHHHHHHHHHHHHHHHHHcCCcccC-----CCCC-CcchHHHHH
Q 005605 553 -----GDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLKLCS-----NDFN-SRDYYVNIR 621 (688)
Q Consensus 553 -----sD~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~i~~qL~~~l~~~~~~~~~-----~~~~-~~~~~~~i~ 621 (688)
+||.+.+..++.|..+...++||..++++...|+.....+.||...|+.++++-.. ...+ .+.....++
T Consensus 910 sdhva~~~v~q~~r~~~q~ga~~e~efc~r~~l~~~~~~~t~~a~~ql~d~L~q~~fpe~~~~~~~v~~ng~d~~l~~~~ 989 (1282)
T KOG0921|consen 910 SDHVAIVSVIQGYREAVQMGAAAEREFCERYSLSNPVLKMTDGARRQLIDVLRQCSFPEDILFDISVNVNGPDRELNLMR 989 (1282)
T ss_pred ccchhhhhhhhhhHHHhhhhhhhhhhHhHhhhhcchhhhhhhhhHHHHHHHHHhccCccccccceeeccCCCCchhHHHH
Confidence 45555555666666566678999999999999999999999999999977664321 0111 122344566
Q ss_pred HHHHhccccceeEecCCCcEEEeecCeEEEECCCCCCC--------CCCCEEEEEeeeccccceeeeccccC
Q 005605 622 KAMLAGYFMQVAHLERTGQYLTVKDNQVVHLHPSNCLD--------HKPEWVIYNEYVLTSRNFIRTVTDVR 685 (688)
Q Consensus 622 ~~l~~g~~~niA~~~~~~~y~~~~~~~~~~ihpsS~l~--------~~~~~vvy~e~~~t~k~y~r~vt~i~ 685 (688)
..||.++|||+|.+....+-.|+..+. ..||-.|++. .+.+|+||.|.++|.-.-.+..|-|.
T Consensus 990 ~lL~~~lypn~~~y~ekrkvLtTe~~~-alihk~Svncp~S~qdM~fPsPFFVFGEKIRTRAIS~K~MslVs 1060 (1282)
T KOG0921|consen 990 SLLVMALYPNVAYYVEKRKVLTTEQSS-ALIHKYSVNCPNSRQEMDFPSPFFVFGEKIRTRAISCKQMSLVS 1060 (1282)
T ss_pred HHHHhhcCCccceeccceeEEeecchh-hhhhhhcccCCCcccccCCCCceeeechhhhhheecccCccccC
Confidence 778999999999888776666665554 5667666651 34689999999998654444444443
No 13
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=6.6e-60 Score=532.49 Aligned_cols=396 Identities=21% Similarity=0.295 Sum_probs=305.5
Q ss_pred HHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcC------ccCCC--ccccCceEEEEcCCchhhhccHHHHHHHhh
Q 005605 69 QQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEG------VDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (688)
Q Consensus 69 ~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~------~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (688)
.+|+++++.+.+|++++++|+|||||||++|+++++. ..... ........+++++|++..+.+++.++.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999988652 11100 001123468889999998888888887765
Q ss_pred cccccceeceeeeecccccc-------cccccccCHHHHHHHHhccccccCCcEEeecccCcChhhHHHHHHHHHHHHhc
Q 005605 141 DVTIGEEVGYSIRFEDCSSA-------RTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKN 213 (688)
Q Consensus 141 ~~~~~~~vg~~~~~~~~~~~-------~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEaher~~~~d~ll~~l~~i~~~ 213 (688)
+......+...+++++.... ...+.+.|++. ....+.++++|||||||||+...|.++.+++.+...
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L------~l~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~ 320 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKL------TLNKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDK 320 (675)
T ss_pred CccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcc------cccccccCCEEEccccccCccchhHHHHHHHHhhhh
Confidence 54221222234444443221 23355566552 223589999999999999999999999999876544
Q ss_pred CCCcEEEEecccc--cHHHHHchhcCCCeeeeCCcc-cccceeecCCCc-----hhHHHHHHHHHHHHHh---cCCCCCE
Q 005605 214 RPDLKLVVMSATL--EAEKFQGYFYGAPLMKVPGRL-HPVEIFYTQEPE-----RDYLEAAIRTVVQIHM---CEPSGDI 282 (688)
Q Consensus 214 ~~~~~vil~SAT~--~~~~~~~~~~~~p~~~v~g~~-~~v~~~~~~~~~-----~~~~~~~~~~l~~i~~---~~~~g~i 282 (688)
..|+++||||+ +.+.+++||.+++++.++|+. +||+++|..... .++.+.....+...+. ...+|++
T Consensus 321 --~rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~i 398 (675)
T PHA02653 321 --IRSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSG 398 (675)
T ss_pred --cCEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcE
Confidence 24899999999 466888999999999999985 999999986542 1222222222222222 1245799
Q ss_pred EEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCC-CCCCCCCCCCceEEEEecCccccCccc
Q 005605 283 LVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPA-PPPSKEGGPPGRKIVVSTNIAETSLTI 361 (688)
Q Consensus 283 LVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~-~~g~~~~~~~~~kvlvaTniae~gi~i 361 (688)
|||+||+++|+.+++.|.+.. +++.+.+|||+|++.++ +++.| ++| +++||||||||||||||
T Consensus 399 LVFlpg~~ei~~l~~~L~~~~-------~~~~v~~LHG~Lsq~eq--~l~~ff~~g-------k~kILVATdIAERGIDI 462 (675)
T PHA02653 399 IVFVASVSQCEEYKKYLEKRL-------PIYDFYIIHGKVPNIDE--ILEKVYSSK-------NPSIIISTPYLESSVTI 462 (675)
T ss_pred EEEECcHHHHHHHHHHHHhhc-------CCceEEeccCCcCHHHH--HHHHHhccC-------ceeEEeccChhhccccc
Confidence 999999999999999998642 36899999999998643 33444 567 89999999999999999
Q ss_pred CCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCCCCceEEEccchhhhcccCCCCCCCcccccC---c
Q 005605 362 DGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSN---L 438 (688)
Q Consensus 362 ~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~~~~~~~l~~~~~pei~r~~---l 438 (688)
|||++|||+|++|... |..++ ..|+|+++|+||+|||||+++|.||+||+++++ .| |.+.+ |
T Consensus 463 p~V~~VID~G~~k~p~--~~~g~----~~~iSkasa~QRaGRAGR~~~G~c~rLyt~~~~--------~p-I~ri~~~~L 527 (675)
T PHA02653 463 RNATHVYDTGRVYVPE--PFGGK----EMFISKSMRTQRKGRVGRVSPGTYVYFYDLDLL--------KP-IKRIDSEFL 527 (675)
T ss_pred cCeeEEEECCCccCCC--cccCc----ccccCHHHHHHhccCcCCCCCCeEEEEECHHHh--------HH-HHHHhHHHH
Confidence 9999999999987663 44443 459999999999999999999999999999874 23 55655 8
Q ss_pred HHHHHHHHHcCCCCCccccCCCCCcHHHHHHHHHHHHHcCCccCCCCcChh--hhhcccCCCChhhhhhhhhcC
Q 005605 439 ANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEM--GEKMSEFPLDPQMSKMLVESP 510 (688)
Q Consensus 439 ~~~~L~l~~~~~~~~~~f~~~~~P~~~~i~~a~~~L~~lgald~~~~lT~l--G~~~~~lpl~p~~~k~ll~~~ 510 (688)
.+++|++|+||++.. .+.|++||+++++.+|++.|..+||+|+ +||.+ |+.|+.+ ++||++++|.
T Consensus 528 ~~~vL~lk~~g~~~~-~~~~ldpP~~~~l~~A~~~L~~lga~~~--~l~~l~~~~~~~~~----~~~k~~~~g~ 594 (675)
T PHA02653 528 HNYILYAKYFNLTLP-EDLFVIPSNLDRLRKTEEYIDSFNISIE--KWYEILSNYYVNML----EYAKIYVKGG 594 (675)
T ss_pred HHHHHHHHHcCCCCc-ccccCCCCCHHHHHHHHHHHHHcCCCch--hhhhhhccccHHHH----HHhHHHhccc
Confidence 899999999999644 4559999999999999999999998855 79999 9999999 9999999874
No 14
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.4e-52 Score=416.01 Aligned_cols=344 Identities=18% Similarity=0.175 Sum_probs=287.1
Q ss_pred CCccCCCCCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceE
Q 005605 39 NNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMM 118 (688)
Q Consensus 39 ~~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~ 118 (688)
.+.+..+|.++++++.+.+++++.++..++++|.+.||.+..|+++++.++||||||.+|.+|+++.. +..+.....++
T Consensus 56 ~~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~L-L~~p~~~~~lV 134 (476)
T KOG0330|consen 56 TDESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRL-LQEPKLFFALV 134 (476)
T ss_pred hhhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHH-HcCCCCceEEE
Confidence 34567889999999999999999999999999999999999999999999999999999999999887 66655566888
Q ss_pred EEEcCCchhhhccHHHHHHHhhcccccceeceeeeeccccc--ccccccccCHHHHHHHHhcccc--ccCCcEEeecccC
Q 005605 119 IACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSS--ARTVLKYLTDGMLLREAMTDPL--LERYKVIVLDEAH 194 (688)
Q Consensus 119 i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~--~~~~i~~lT~G~l~~~~~~~~l--l~~~~~lIlDEah 194 (688)
+.||++++.|+..+++.+....+..+...||+......... .+..|.+.|||++.+++..... +.+++++|+||||
T Consensus 135 LtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEAD 214 (476)
T KOG0330|consen 135 LTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEAD 214 (476)
T ss_pred ecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHH
Confidence 89999999999999998988889888888987544433332 3456668999999999985443 8999999999999
Q ss_pred cChhhHHHHHHHHHHHHhcCCCcEEEEeccccc--HHHHHchhcCCCeeeeCCccc----ccceeecCCCchhHHHHHHH
Q 005605 195 ERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE--AEKFQGYFYGAPLMKVPGRLH----PVEIFYTQEPERDYLEAAIR 268 (688)
Q Consensus 195 er~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~--~~~~~~~~~~~p~~~v~g~~~----~v~~~~~~~~~~~~~~~~~~ 268 (688)
|.+++||.-.+=+.+...+++.|++||||||. +.++..--...|+-......| .++++|+..+..++...++.
T Consensus 215 -rlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ 293 (476)
T KOG0330|consen 215 -RLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVY 293 (476)
T ss_pred -hhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHHH
Confidence 78888886544444434445889999999994 566665545566544433333 46788888887665444443
Q ss_pred HHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEE
Q 005605 269 TVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKI 348 (688)
Q Consensus 269 ~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kv 348 (688)
+.+....+++|||++++...+.++-.|+.. ++.+++|||.|+|..|.-+|+.|++| .+.|
T Consensus 294 ----ll~e~~g~s~iVF~~t~~tt~~la~~L~~l---------g~~a~~LhGqmsq~~Rlg~l~~Fk~~-------~r~i 353 (476)
T KOG0330|consen 294 ----LLNELAGNSVIVFCNTCNTTRFLALLLRNL---------GFQAIPLHGQMSQSKRLGALNKFKAG-------ARSI 353 (476)
T ss_pred ----HHHhhcCCcEEEEEeccchHHHHHHHHHhc---------CcceecccchhhHHHHHHHHHHHhcc-------CCcE
Confidence 333345689999999999999999999874 89999999999999999999999999 8999
Q ss_pred EEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccchhhhc
Q 005605 349 VVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFN 422 (688)
Q Consensus 349 lvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~~ 422 (688)
++|||||+||+|||.|++|||||+ |.+..+|+||+||+||+ ++|.+++|+|..+.+
T Consensus 354 Lv~TDVaSRGLDip~Vd~VVNyDi------------------P~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve 410 (476)
T KOG0330|consen 354 LVCTDVASRGLDIPHVDVVVNYDI------------------PTHSKDYIHRVGRTARAGRSGKAITLVTQYDVE 410 (476)
T ss_pred EEecchhcccCCCCCceEEEecCC------------------CCcHHHHHHHcccccccCCCcceEEEEehhhhH
Confidence 999999999999999999999999 99999999999999999 999999999985543
No 15
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.7e-49 Score=422.20 Aligned_cols=344 Identities=17% Similarity=0.215 Sum_probs=281.5
Q ss_pred CCCCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccC-----CCccccCceE
Q 005605 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDI-----ETPDRRRKMM 118 (688)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~-----~~~~~~~~~~ 118 (688)
..|..+++++....+++.+++..|+++|.+.++.+..|++++.++.||||||.+|.+|.+....- .....+..++
T Consensus 91 ~~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLV 170 (519)
T KOG0331|consen 91 AAFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLV 170 (519)
T ss_pred hhhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEE
Confidence 36999999999999999999999999999999999999999999999999999999887765421 1223344667
Q ss_pred EEEcCCchhhhccHHHHHHHhhcccccceeceeeeecccccc--cccccccCHHHHHHHHhcccc-ccCCcEEeecccCc
Q 005605 119 IACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSA--RTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHE 195 (688)
Q Consensus 119 i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~--~~~i~~lT~G~l~~~~~~~~l-l~~~~~lIlDEahe 195 (688)
++||++++.|+..++..+...........+|......+.... ...|.+.|||++.+++....+ |++++++||||||
T Consensus 171 L~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEAD- 249 (519)
T KOG0331|consen 171 LAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEAD- 249 (519)
T ss_pred EcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHH-
Confidence 888888888888888888777766566677765444443333 345678899999999988877 9999999999999
Q ss_pred ChhhHHHHHHHHHHHHhc-CCCcEEEEeccccc--HHHHHchhcCCCeeeeCC-c-----ccccceeecCCCchhHHHHH
Q 005605 196 RTLATDVLFGLLKEVLKN-RPDLKLVVMSATLE--AEKFQGYFYGAPLMKVPG-R-----LHPVEIFYTQEPERDYLEAA 266 (688)
Q Consensus 196 r~~~~d~ll~~l~~i~~~-~~~~~vil~SAT~~--~~~~~~~~~~~p~~~v~g-~-----~~~v~~~~~~~~~~~~~~~~ 266 (688)
||++++|--++-+.+.+. +++.|++++|||++ +..++.-|.+.|+-..-| . .+.+.+....+....+...+
T Consensus 250 rMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l 329 (519)
T KOG0331|consen 250 RMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKL 329 (519)
T ss_pred hhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHH
Confidence 899999776666666666 55678999999995 566776555566544333 2 34566666666655554444
Q ss_pred HHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCce
Q 005605 267 IRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGR 346 (688)
Q Consensus 267 ~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~ 346 (688)
...+..+. ....|++||||.|+..|+++...++.. ++.+.+|||+.+|.+|..+++.|++| +.
T Consensus 330 ~~lL~~~~-~~~~~KvIIFc~tkr~~~~l~~~l~~~---------~~~a~~iHGd~sQ~eR~~~L~~FreG-------~~ 392 (519)
T KOG0331|consen 330 GKLLEDIS-SDSEGKVIIFCETKRTCDELARNLRRK---------GWPAVAIHGDKSQSERDWVLKGFREG-------KS 392 (519)
T ss_pred HHHHHHHh-ccCCCcEEEEecchhhHHHHHHHHHhc---------CcceeeecccccHHHHHHHHHhcccC-------Cc
Confidence 44444444 667899999999999999999999874 58999999999999999999999999 89
Q ss_pred EEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccchhhhcc
Q 005605 347 KIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFNN 423 (688)
Q Consensus 347 kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~~~ 423 (688)
.||||||||+||||||||++||||++ |-+.++|+||+|||||+ +.|.+|.||+..++..
T Consensus 393 ~vLVATdVAaRGLDi~dV~lVInydf------------------P~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~ 452 (519)
T KOG0331|consen 393 PVLVATDVAARGLDVPDVDLVINYDF------------------PNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKL 452 (519)
T ss_pred ceEEEcccccccCCCccccEEEeCCC------------------CCCHHHHHhhcCccccCCCCceEEEEEeHHHHHH
Confidence 99999999999999999999999999 99999999999999998 8999999999887654
No 16
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8e-47 Score=421.07 Aligned_cols=338 Identities=20% Similarity=0.281 Sum_probs=279.4
Q ss_pred CCCCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccC-ceEEEEc
Q 005605 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRR-KMMIACT 122 (688)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~-~~~i~~t 122 (688)
.+|+++++++.+.+.+.+.|+..++++|...||.+..|+++++.++||||||.+|..|+++........... .++++||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PT 108 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPT 108 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCC
Confidence 569999999999999999999999999999999999999999999999999999999999875321111112 6889999
Q ss_pred CCchhhhccHHHHHHHhh-cccccceeceeeeeccccc--ccccccccCHHHHHHHHhcccc-ccCCcEEeecccCcChh
Q 005605 123 QPRRVAAMSVSRRVAEEM-DVTIGEEVGYSIRFEDCSS--ARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTL 198 (688)
Q Consensus 123 ~p~~~~~~~v~~~v~~~~-~~~~~~~vg~~~~~~~~~~--~~~~i~~lT~G~l~~~~~~~~l-l~~~~~lIlDEaher~~ 198 (688)
++++.|+.+++..++... +..+...+|......+... ...+|.+.|||++++++....+ +.+++++|||||| +++
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEAD-rmL 187 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEAD-RML 187 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHh-hhh
Confidence 999999999999999887 5666666765432222221 1367889999999999988866 9999999999999 688
Q ss_pred hHHHHHHHHHHHHhcCCCcEEEEecccccH--HHHHchhcCCCe-eeeC--C---cccccceeecCCCchhHHHHHHHHH
Q 005605 199 ATDVLFGLLKEVLKNRPDLKLVVMSATLEA--EKFQGYFYGAPL-MKVP--G---RLHPVEIFYTQEPERDYLEAAIRTV 270 (688)
Q Consensus 199 ~~d~ll~~l~~i~~~~~~~~vil~SAT~~~--~~~~~~~~~~p~-~~v~--g---~~~~v~~~~~~~~~~~~~~~~~~~l 270 (688)
+++|.-++.+.+....++.|+++||||++. ..++..+...|+ +.+. . ....++++|......+ .....+
T Consensus 188 d~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~---~k~~~L 264 (513)
T COG0513 188 DMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEE---EKLELL 264 (513)
T ss_pred cCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHH---HHHHHH
Confidence 987766666555555558999999999954 456655555664 3333 1 2356788888777554 234555
Q ss_pred HHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEE
Q 005605 271 VQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVV 350 (688)
Q Consensus 271 ~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlv 350 (688)
..+......+++|||++++..++.++..|... ++.+..|||+|+|++|.++++.|+.| ..+|+|
T Consensus 265 ~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~---------g~~~~~lhG~l~q~~R~~~l~~F~~g-------~~~vLV 328 (513)
T COG0513 265 LKLLKDEDEGRVIVFVRTKRLVEELAESLRKR---------GFKVAALHGDLPQEERDRALEKFKDG-------ELRVLV 328 (513)
T ss_pred HHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHC---------CCeEEEecCCCCHHHHHHHHHHHHcC-------CCCEEE
Confidence 66666666778999999999999999999874 79999999999999999999999999 899999
Q ss_pred ecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccchh
Q 005605 351 STNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEK 419 (688)
Q Consensus 351 aTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~ 419 (688)
|||||+||||||+|.+||||++ |.+.++|+||+|||||+ +.|.++.|+++.
T Consensus 329 aTDvaaRGiDi~~v~~VinyD~------------------p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 329 ATDVAARGLDIPDVSHVINYDL------------------PLDPEDYVHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred EechhhccCCccccceeEEccC------------------CCCHHHheeccCccccCCCCCeEEEEeCcH
Confidence 9999999999999999999999 99999999999999999 899999999974
No 17
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-45 Score=354.11 Aligned_cols=342 Identities=17% Similarity=0.224 Sum_probs=285.9
Q ss_pred CCCCCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEc
Q 005605 43 INRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACT 122 (688)
Q Consensus 43 ~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t 122 (688)
..+|+++++++.+++.+-.-|+..|+.+|+..++.|.+|++|+.++++|+|||..|..-+++..++... ..+.+++.||
T Consensus 26 ~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r-~tQ~lilsPT 104 (400)
T KOG0328|consen 26 IPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVR-ETQALILSPT 104 (400)
T ss_pred ccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccc-eeeEEEecCh
Confidence 467999999999999999999999999999999999999999999999999999998888877765542 2457788899
Q ss_pred CCchhhhccHHHHHHHhhcccccceeceeeeeccccc--ccccccccCHHHHHHHHhcccc-ccCCcEEeecccCcChhh
Q 005605 123 QPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSS--ARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLA 199 (688)
Q Consensus 123 ~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~--~~~~i~~lT~G~l~~~~~~~~l-l~~~~~lIlDEaher~~~ 199 (688)
++++.|+..+...++..+++.+...+|...-.++... ....+...|||+..+++..+.+ -..++++||||||+ +++
T Consensus 105 RELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDe-mL~ 183 (400)
T KOG0328|consen 105 RELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADE-MLN 183 (400)
T ss_pred HHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHH-HHH
Confidence 9999898888888888888887777775543333222 2455667899999999988887 78999999999997 666
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEecccccHH--HHHchhcCCCeeeeCCc----ccccceeecCCCchhHHHHHHHHHHHH
Q 005605 200 TDVLFGLLKEVLKNRPDLKLVVMSATLEAE--KFQGYFYGAPLMKVPGR----LHPVEIFYTQEPERDYLEAAIRTVVQI 273 (688)
Q Consensus 200 ~d~ll~~l~~i~~~~~~~~vil~SAT~~~~--~~~~~~~~~p~~~v~g~----~~~v~~~~~~~~~~~~~~~~~~~l~~i 273 (688)
.++--++...+....|+.|++++|||++.+ ...++|...|+.....+ ...++++|......++ ..++++.+
T Consensus 184 kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~Eew---KfdtLcdL 260 (400)
T KOG0328|consen 184 KGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEW---KFDTLCDL 260 (400)
T ss_pred hhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhh---hHhHHHHH
Confidence 655444444444456699999999999654 45577878887555433 3458899988776665 45666666
Q ss_pred HhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecC
Q 005605 274 HMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN 353 (688)
Q Consensus 274 ~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTn 353 (688)
+..-.-.+.++||+|++.++++.+++++. ++.+.++||+|++++|.+++..|+.| +.+|+++||
T Consensus 261 Yd~LtItQavIFcnTk~kVdwLtekm~~~---------nftVssmHGDm~qkERd~im~dFRsg-------~SrvLitTD 324 (400)
T KOG0328|consen 261 YDTLTITQAVIFCNTKRKVDWLTEKMREA---------NFTVSSMHGDMEQKERDKIMNDFRSG-------KSRVLITTD 324 (400)
T ss_pred hhhhehheEEEEecccchhhHHHHHHHhh---------CceeeeccCCcchhHHHHHHHHhhcC-------CceEEEEec
Confidence 66556678999999999999999999885 79999999999999999999999999 899999999
Q ss_pred ccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccchhhhcc
Q 005605 354 IAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFNN 423 (688)
Q Consensus 354 iae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~~~ 423 (688)
|-+||||+|.|.+|||||+ |...+.|+||+||+||. +.|.++.|+..++.+.
T Consensus 325 VwaRGiDv~qVslviNYDL------------------P~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~ 377 (400)
T KOG0328|consen 325 VWARGIDVQQVSLVINYDL------------------PNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRI 377 (400)
T ss_pred hhhccCCcceeEEEEecCC------------------CccHHHHhhhhccccccCCcceEEEEecHHHHHH
Confidence 9999999999999999999 99999999999999999 9999999999887654
No 18
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.2e-45 Score=382.56 Aligned_cols=366 Identities=17% Similarity=0.182 Sum_probs=289.5
Q ss_pred CccchhhhcccccCCCCCCCcccCCCccCCCCCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCCh
Q 005605 15 VDETSVSAKLVKTNGVGPGAMMNNNNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGK 94 (688)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGK 94 (688)
.+.++.+|....++...+-.. ..-+.+..+|++.+++..++++++.-|+..++++|..+||...++++++.+++|||||
T Consensus 217 ~Em~~rdwri~redynis~kg-~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGk 295 (673)
T KOG0333|consen 217 AEMTERDWRIFREDYNISIKG-GRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGK 295 (673)
T ss_pred HhcCCccceeeecceeeeecC-CCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCc
Confidence 334455555555543322222 3345567889999999999999999999999999999999999999999999999999
Q ss_pred hcchhHHHhcCccC--------CCccccCceEEEEcCCchhhhccHHHHHHHhhcccccceeceeeeecc--cccccccc
Q 005605 95 TTQIPQFVLEGVDI--------ETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFED--CSSARTVL 164 (688)
Q Consensus 95 Tt~~~~~ll~~~~~--------~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~--~~~~~~~i 164 (688)
|.+|+.+++....- .....+.++++.||+++..|+..-...++..+++.+...||+....++ ..+..+.|
T Consensus 296 taaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gcei 375 (673)
T KOG0333|consen 296 TAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEI 375 (673)
T ss_pred cccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhcccee
Confidence 99998777654311 112345678899999999999888899999999998888987644444 33457888
Q ss_pred cccCHHHHHHHHhcccc-ccCCcEEeecccCcChhhHHHHHHHHHHHHhcC-----------------------C--CcE
Q 005605 165 KYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLATDVLFGLLKEVLKNR-----------------------P--DLK 218 (688)
Q Consensus 165 ~~lT~G~l~~~~~~~~l-l~~~~~lIlDEaher~~~~d~ll~~l~~i~~~~-----------------------~--~~~ 218 (688)
.+.|||+|++.+-.+-+ ++++.++|+|||| ++++++|--++.+.+.... . -.|
T Consensus 376 viatPgrLid~Lenr~lvl~qctyvvldead-rmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrq 454 (673)
T KOG0333|consen 376 VIATPGRLIDSLENRYLVLNQCTYVVLDEAD-RMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQ 454 (673)
T ss_pred eecCchHHHHHHHHHHHHhccCceEeccchh-hhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeE
Confidence 99999999999887776 9999999999999 7889888555555543211 0 168
Q ss_pred EEEeccccc--HHHHHchhcCCCeeeeC---Cccc-ccceeecCCCchhHHHHHHHHHHHHHhcCCCCCEEEecCcHHHH
Q 005605 219 LVVMSATLE--AEKFQGYFYGAPLMKVP---GRLH-PVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEI 292 (688)
Q Consensus 219 vil~SAT~~--~~~~~~~~~~~p~~~v~---g~~~-~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i 292 (688)
+++|||||+ ++.++.-+...|++.-. |+.. -+++...-....+.. ..|..+..+....+||||+++++.+
T Consensus 455 T~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~----kkL~eil~~~~~ppiIIFvN~kk~~ 530 (673)
T KOG0333|consen 455 TVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKR----KKLIEILESNFDPPIIIFVNTKKGA 530 (673)
T ss_pred EEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHH----HHHHHHHHhCCCCCEEEEEechhhH
Confidence 999999995 46676544455554433 3333 255555544444443 3444455545567899999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCcccCCeEEEEcCCc
Q 005605 293 EDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGF 372 (688)
Q Consensus 293 ~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~ 372 (688)
+.+++.|.+. ++.+..|||+-+|++|+.+++.|+.| ...|+||||||+||||||||.+||||++
T Consensus 531 d~lAk~LeK~---------g~~~~tlHg~k~qeQRe~aL~~fr~~-------t~dIlVaTDvAgRGIDIpnVSlVinydm 594 (673)
T KOG0333|consen 531 DALAKILEKA---------GYKVTTLHGGKSQEQRENALADFREG-------TGDILVATDVAGRGIDIPNVSLVINYDM 594 (673)
T ss_pred HHHHHHHhhc---------cceEEEeeCCccHHHHHHHHHHHHhc-------CCCEEEEecccccCCCCCccceeeecch
Confidence 9999999885 79999999999999999999999998 7899999999999999999999999999
Q ss_pred ccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccchhh
Q 005605 373 AKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKS 420 (688)
Q Consensus 373 ~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~ 420 (688)
+.|.++|.||+|||||+ ..|.+++|+|+++
T Consensus 595 ------------------aksieDYtHRIGRTgRAGk~GtaiSflt~~d 625 (673)
T KOG0333|consen 595 ------------------AKSIEDYTHRIGRTGRAGKSGTAISFLTPAD 625 (673)
T ss_pred ------------------hhhHHHHHHHhccccccccCceeEEEeccch
Confidence 99999999999999999 8899999999877
No 19
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-45 Score=379.29 Aligned_cols=341 Identities=19% Similarity=0.252 Sum_probs=271.9
Q ss_pred CCCCCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCc--cccCceEEE
Q 005605 43 INRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETP--DRRRKMMIA 120 (688)
Q Consensus 43 ~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~--~~~~~~~i~ 120 (688)
..+|.+++||..+++++...|+..|+|+|...||..+-|++++.++.||||||.+|.+|+++..-+.+. ...+.++++
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~ 259 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLV 259 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEe
Confidence 347999999999999999999999999999999999999999999999999999999999998744432 223567889
Q ss_pred EcCCchhhhccHHHHHHHhhcccccceecee-eeeccc-ccccccccccCHHHHHHHHhcccc--ccCCcEEeecccCcC
Q 005605 121 CTQPRRVAAMSVSRRVAEEMDVTIGEEVGYS-IRFEDC-SSARTVLKYLTDGMLLREAMTDPL--LERYKVIVLDEAHER 196 (688)
Q Consensus 121 ~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~-~~~~~~-~~~~~~i~~lT~G~l~~~~~~~~l--l~~~~~lIlDEaher 196 (688)
||+++.+|+.+|..+++....+.++..||+- ++.... ......|.+.|||++.+++.+.+. +.++.++|||||| |
T Consensus 260 PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD-R 338 (691)
T KOG0338|consen 260 PTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD-R 338 (691)
T ss_pred ccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH-H
Confidence 9999999999999999999999988888853 222221 123567788999999999998875 8999999999999 7
Q ss_pred hhhHHHHHHHHHHHHhcCC-CcEEEEeccccc--HHHHHchhcCCCeeeeCCc----ccccceeecC-CCchhHH-HHHH
Q 005605 197 TLATDVLFGLLKEVLKNRP-DLKLVVMSATLE--AEKFQGYFYGAPLMKVPGR----LHPVEIFYTQ-EPERDYL-EAAI 267 (688)
Q Consensus 197 ~~~~d~ll~~l~~i~~~~~-~~~vil~SAT~~--~~~~~~~~~~~p~~~v~g~----~~~v~~~~~~-~~~~~~~-~~~~ 267 (688)
|+...| -+.++.|.+..| ++|.+||||||. +..++..-.+.|+-..... .....+-|+. .|.++-. ++.+
T Consensus 339 MLeegF-ademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l 417 (691)
T KOG0338|consen 339 MLEEGF-ADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAML 417 (691)
T ss_pred HHHHHH-HHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHH
Confidence 877765 445555555544 789999999994 5677777667776433211 1122333332 1222211 1222
Q ss_pred HHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceE
Q 005605 268 RTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRK 347 (688)
Q Consensus 268 ~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~k 347 (688)
.. +........++||+.|++.++.+.-.|.-. ++.+.-|||+|+|++|..+++.|+.+ ...
T Consensus 418 ~~---l~~rtf~~~~ivFv~tKk~AHRl~IllGLl---------gl~agElHGsLtQ~QRlesL~kFk~~-------eid 478 (691)
T KOG0338|consen 418 AS---LITRTFQDRTIVFVRTKKQAHRLRILLGLL---------GLKAGELHGSLTQEQRLESLEKFKKE-------EID 478 (691)
T ss_pred HH---HHHHhcccceEEEEehHHHHHHHHHHHHHh---------hchhhhhcccccHHHHHHHHHHHHhc-------cCC
Confidence 22 222223568999999999999887666542 78999999999999999999999998 899
Q ss_pred EEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccchhhhc
Q 005605 348 IVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFN 422 (688)
Q Consensus 348 vlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~~ 422 (688)
|+||||+|+|||||+||..||||.+ |.+.+.|+||+|||.|+ +.|..++|..+++-.
T Consensus 479 vLiaTDvAsRGLDI~gV~tVINy~m------------------P~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRk 536 (691)
T KOG0338|consen 479 VLIATDVASRGLDIEGVQTVINYAM------------------PKTIEHYLHRVGRTARAGRAGRSVTLVGESDRK 536 (691)
T ss_pred EEEEechhhccCCccceeEEEeccC------------------chhHHHHHHHhhhhhhcccCcceEEEeccccHH
Confidence 9999999999999999999999999 99999999999999999 899999999987653
No 20
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-44 Score=376.07 Aligned_cols=343 Identities=18% Similarity=0.247 Sum_probs=286.8
Q ss_pred ccCCCCCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCc---cCCCccccCce
Q 005605 41 SLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGV---DIETPDRRRKM 117 (688)
Q Consensus 41 ~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~---~~~~~~~~~~~ 117 (688)
..+..|.+++++.+..+.|++.++..++.+|...|+..+.|++|+..+.||||||++|..|+++.. .+...++...+
T Consensus 66 ~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGal 145 (758)
T KOG0343|consen 66 TTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGAL 145 (758)
T ss_pred hhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeE
Confidence 345689999999999999999999999999999999999999999999999999999998888764 24444445567
Q ss_pred EEEEcCCchhhhccHHHHHHHhhcccccceecee-eeecccccccccccccCHHHHHHHHhcccc--ccCCcEEeecccC
Q 005605 118 MIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYS-IRFEDCSSARTVLKYLTDGMLLREAMTDPL--LERYKVIVLDEAH 194 (688)
Q Consensus 118 ~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~-~~~~~~~~~~~~i~~lT~G~l~~~~~~~~l--l~~~~~lIlDEah 194 (688)
+|.||+++++|+..+...+++....+.|..+|+. +.++......-.|.+||||+|++++...+. ..+..+|||||||
T Consensus 146 IISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEAD 225 (758)
T KOG0343|consen 146 IISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEAD 225 (758)
T ss_pred EecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHH
Confidence 8899999999999999999999999999888864 333333445677889999999999998886 5688999999999
Q ss_pred cChhhHHHHHHHHHHHHh-cCCCcEEEEecccc--cHHHHHchhcCCCeee-eC-----CcccccceeecCCCchhHHHH
Q 005605 195 ERTLATDVLFGLLKEVLK-NRPDLKLVVMSATL--EAEKFQGYFYGAPLMK-VP-----GRLHPVEIFYTQEPERDYLEA 265 (688)
Q Consensus 195 er~~~~d~ll~~l~~i~~-~~~~~~vil~SAT~--~~~~~~~~~~~~p~~~-v~-----g~~~~v~~~~~~~~~~~~~~~ 265 (688)
|+++++|-- .|..|.. ..+.+|++|||||. .+..+++.-...|.+. +. +......++|...+..+++..
T Consensus 226 -R~LDMGFk~-tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~ 303 (758)
T KOG0343|consen 226 -RMLDMGFKK-TLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDM 303 (758)
T ss_pred -HHHHHhHHH-HHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHH
Confidence 899998743 3334443 34478999999998 5677887765666543 32 233456889988887776554
Q ss_pred HHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCc
Q 005605 266 AIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPG 345 (688)
Q Consensus 266 ~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~ 345 (688)
+ .....+...-.+|||++|+.++..+++..... .+++.+++|||.|+|..|..++..|-.. +
T Consensus 304 L----~sFI~shlk~K~iVF~SscKqvkf~~e~F~rl-------rpg~~l~~L~G~~~Q~~R~ev~~~F~~~-------~ 365 (758)
T KOG0343|consen 304 L----WSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRL-------RPGIPLLALHGTMSQKKRIEVYKKFVRK-------R 365 (758)
T ss_pred H----HHHHHhccccceEEEEehhhHHHHHHHHHHhc-------CCCCceeeeccchhHHHHHHHHHHHHHh-------c
Confidence 4 44444556678999999999999999998774 4799999999999999999999999876 6
Q ss_pred eEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccchhhh
Q 005605 346 RKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (688)
Q Consensus 346 ~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (688)
.-|++|||||+||||+|.|++||++|. |.+.++|+||+||+.|. ..|.|+.+.++.+.
T Consensus 366 ~~vLF~TDv~aRGLDFpaVdwViQ~DC------------------Pedv~tYIHRvGRtAR~~~~G~sll~L~psEe 424 (758)
T KOG0343|consen 366 AVVLFCTDVAARGLDFPAVDWVIQVDC------------------PEDVDTYIHRVGRTARYKERGESLLMLTPSEE 424 (758)
T ss_pred ceEEEeehhhhccCCCcccceEEEecC------------------chhHHHHHHHhhhhhcccCCCceEEEEcchhH
Confidence 789999999999999999999999888 99999999999999999 88999999988763
No 21
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.1e-43 Score=395.02 Aligned_cols=339 Identities=18% Similarity=0.221 Sum_probs=261.2
Q ss_pred CCCCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcC
Q 005605 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQ 123 (688)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~ 123 (688)
.+|+++++++.+.+.++..|+..++++|.++++.+.+|++++++||||||||+++..++++...... ...+.++++||+
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~-~~~~~lil~Ptr 82 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR-FRVQALVLCPTR 82 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc-CCceEEEEeCCH
Confidence 4699999999999999999999999999999999999999999999999999999999887653221 123456777777
Q ss_pred CchhhhccHHHHHHHhh-cccccceeceeeeeccc--ccccccccccCHHHHHHHHhcccc-ccCCcEEeecccCcChhh
Q 005605 124 PRRVAAMSVSRRVAEEM-DVTIGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLA 199 (688)
Q Consensus 124 p~~~~~~~v~~~v~~~~-~~~~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~~~~~~~~l-l~~~~~lIlDEaher~~~ 199 (688)
++..|.....+.+.... +..+....|......+. ......|.++|||++.+++....+ +.++++||+|||| ++++
T Consensus 83 eLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad-~~l~ 161 (460)
T PRK11776 83 ELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD-RMLD 161 (460)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH-HHhC
Confidence 77766666656555433 34444444432111111 113457889999999999877665 8999999999999 4666
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEeccccc--HHHHHchhcCCCe-eeeCC--cccccceeecCCCchhHHHHHHHHHHHHH
Q 005605 200 TDVLFGLLKEVLKNRPDLKLVVMSATLE--AEKFQGYFYGAPL-MKVPG--RLHPVEIFYTQEPERDYLEAAIRTVVQIH 274 (688)
Q Consensus 200 ~d~ll~~l~~i~~~~~~~~vil~SAT~~--~~~~~~~~~~~p~-~~v~g--~~~~v~~~~~~~~~~~~~~~~~~~l~~i~ 274 (688)
.++...+...+....++.|++++|||++ ...++..+...|. +.+.. ....++++|...+..++.+ .+..+.
T Consensus 162 ~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~----~l~~ll 237 (460)
T PRK11776 162 MGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDERLP----ALQRLL 237 (460)
T ss_pred cCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHHHHH----HHHHHH
Confidence 6554433333333344789999999994 4566666666554 33322 2233666666655555433 334444
Q ss_pred hcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCc
Q 005605 275 MCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNI 354 (688)
Q Consensus 275 ~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTni 354 (688)
....++++||||+++++++.+++.|.+. ++.+..+||++++.+|+.+++.|++| ..+||||||+
T Consensus 238 ~~~~~~~~lVF~~t~~~~~~l~~~L~~~---------~~~v~~~hg~~~~~eR~~~l~~F~~g-------~~~vLVaTdv 301 (460)
T PRK11776 238 LHHQPESCVVFCNTKKECQEVADALNAQ---------GFSALALHGDLEQRDRDQVLVRFANR-------SCSVLVATDV 301 (460)
T ss_pred HhcCCCceEEEECCHHHHHHHHHHHHhC---------CCcEEEEeCCCCHHHHHHHHHHHHcC-------CCcEEEEecc
Confidence 4456778999999999999999999874 68899999999999999999999999 8999999999
Q ss_pred cccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccchhhhc
Q 005605 355 AETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFN 422 (688)
Q Consensus 355 ae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~~ 422 (688)
+++|||||+|++|||+|+ |.+.++|+||+|||||. +.|.||.|++.++..
T Consensus 302 ~~rGiDi~~v~~VI~~d~------------------p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~ 352 (460)
T PRK11776 302 AARGLDIKALEAVINYEL------------------ARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQ 352 (460)
T ss_pred cccccchhcCCeEEEecC------------------CCCHhHhhhhcccccCCCCcceEEEEEchhHHH
Confidence 999999999999999999 99999999999999999 889999999987653
No 22
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.1e-43 Score=399.53 Aligned_cols=348 Identities=16% Similarity=0.168 Sum_probs=261.5
Q ss_pred CCCccCCCCCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccC----CCccc
Q 005605 38 NNNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDI----ETPDR 113 (688)
Q Consensus 38 ~~~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~----~~~~~ 113 (688)
..+.+..+|+++++++.+.+.+.+.|+..++++|.++++.+.+|+++++++|||||||+++..+++..... .....
T Consensus 124 ~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~g 203 (545)
T PTZ00110 124 NVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDG 203 (545)
T ss_pred CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCC
Confidence 34556778999999999999999999999999999999999999999999999999999988776654311 11112
Q ss_pred cCceEEEEcCCchhhhccHHHHHHHhhcccccceeceeeeecccc--cccccccccCHHHHHHHHhcccc-ccCCcEEee
Q 005605 114 RRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCS--SARTVLKYLTDGMLLREAMTDPL-LERYKVIVL 190 (688)
Q Consensus 114 ~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~--~~~~~i~~lT~G~l~~~~~~~~l-l~~~~~lIl 190 (688)
...++++||+++..|....+..+....+......+|......... .....|.+.|||++.+++..... +.++++||+
T Consensus 204 p~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lVi 283 (545)
T PTZ00110 204 PIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVL 283 (545)
T ss_pred cEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEe
Confidence 335667777777777766666666554444444444322111111 12356888999999999877654 899999999
Q ss_pred cccCcChhhHHHHHHHHHHHHhcCCCcEEEEeccccc--HHHHHchhc-CCCeeeeCCc-----ccccceeecCCCchhH
Q 005605 191 DEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE--AEKFQGYFY-GAPLMKVPGR-----LHPVEIFYTQEPERDY 262 (688)
Q Consensus 191 DEaher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~--~~~~~~~~~-~~p~~~v~g~-----~~~v~~~~~~~~~~~~ 262 (688)
|||| ++++.++...+.+.+...+++.|++++|||++ .+.+++.+. ..|+....+. ...+++.+......++
T Consensus 284 DEAd-~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k 362 (545)
T PTZ00110 284 DEAD-RMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEK 362 (545)
T ss_pred ehHH-hhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhH
Confidence 9999 57777765555444444567899999999995 345555443 3454322221 1234444433333333
Q ss_pred HHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCC
Q 005605 263 LEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGG 342 (688)
Q Consensus 263 ~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~ 342 (688)
...+...+..+.. ..+++||||++++.++.+++.|... ++.+..+||++++++|..+++.|+.|
T Consensus 363 ~~~L~~ll~~~~~--~~~k~LIF~~t~~~a~~l~~~L~~~---------g~~~~~ihg~~~~~eR~~il~~F~~G----- 426 (545)
T PTZ00110 363 RGKLKMLLQRIMR--DGDKILIFVETKKGADFLTKELRLD---------GWPALCIHGDKKQEERTWVLNEFKTG----- 426 (545)
T ss_pred HHHHHHHHHHhcc--cCCeEEEEecChHHHHHHHHHHHHc---------CCcEEEEECCCcHHHHHHHHHHHhcC-----
Confidence 3333333333221 4678999999999999999999763 68899999999999999999999999
Q ss_pred CCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccchhhh
Q 005605 343 PPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (688)
Q Consensus 343 ~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (688)
..+||||||+++||||||+|++|||+|+ |.+.++|+||+|||||. ++|.||.|+++++.
T Consensus 427 --~~~ILVaTdv~~rGIDi~~v~~VI~~d~------------------P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~ 486 (545)
T PTZ00110 427 --KSPIMIATDVASRGLDVKDVKYVINFDF------------------PNQIEDYVHRIGRTGRAGAKGASYTFLTPDKY 486 (545)
T ss_pred --CCcEEEEcchhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHhcccccCCCCceEEEEECcchH
Confidence 8899999999999999999999999999 99999999999999999 89999999998765
Q ss_pred c
Q 005605 422 N 422 (688)
Q Consensus 422 ~ 422 (688)
.
T Consensus 487 ~ 487 (545)
T PTZ00110 487 R 487 (545)
T ss_pred H
Confidence 3
No 23
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8e-44 Score=365.38 Aligned_cols=357 Identities=18% Similarity=0.188 Sum_probs=275.5
Q ss_pred CCCCCC--CChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCC----CccccCceE
Q 005605 45 RWNGKP--YSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIE----TPDRRRKMM 118 (688)
Q Consensus 45 ~f~~~~--l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~----~~~~~~~~~ 118 (688)
.|++++ |++++++++.+.|+-..+++|...||.+..+++|++-++||||||.+|..|+++-.--. .+....+++
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalI 84 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALI 84 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEE
Confidence 466664 66999999999999999999999999999999999999999999999999888654101 111124678
Q ss_pred EEEcCCchhhhccHHHHHHHh-hcccccceeceeeeeccc---ccccccccccCHHHHHHHHhccc-cc--cCCcEEeec
Q 005605 119 IACTQPRRVAAMSVSRRVAEE-MDVTIGEEVGYSIRFEDC---SSARTVLKYLTDGMLLREAMTDP-LL--ERYKVIVLD 191 (688)
Q Consensus 119 i~~t~p~~~~~~~v~~~v~~~-~~~~~~~~vg~~~~~~~~---~~~~~~i~~lT~G~l~~~~~~~~-ll--~~~~~lIlD 191 (688)
|.||+++..|+.+|+..+.+. ........+|...-.++. ......|.+.|||++.+++.... .+ .+.++||||
T Consensus 85 IsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLD 164 (567)
T KOG0345|consen 85 ISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLD 164 (567)
T ss_pred ecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEec
Confidence 899999999999999888776 344445566653222222 12356688999999999987743 34 499999999
Q ss_pred ccCcChhhHHHHHHHHHHHHhcCCCcEEEEecccc--cHHHHHchhcCCCeeeeCC-cc---cc--cceeecCCCchhHH
Q 005605 192 EAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATL--EAEKFQGYFYGAPLMKVPG-RL---HP--VEIFYTQEPERDYL 263 (688)
Q Consensus 192 Eaher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~--~~~~~~~~~~~~p~~~v~g-~~---~~--v~~~~~~~~~~~~~ 263 (688)
||| |.++++|--.+-..+......+++=|||||+ .++.+.......|+-...+ .. -| +..+|..++...+.
T Consensus 165 EAD-rLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~ 243 (567)
T KOG0345|consen 165 EAD-RLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKL 243 (567)
T ss_pred chH-hHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHH
Confidence 999 7888887544444443334467899999999 4566777776777643322 21 23 77889888776665
Q ss_pred HHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCC
Q 005605 264 EAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGP 343 (688)
Q Consensus 264 ~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~ 343 (688)
..+ +++..+...+++|||+||++.++..+..+.... +...++++||.|++.+|.++++.|...
T Consensus 244 ~~l----v~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l-------~~~~i~~iHGK~~q~~R~k~~~~F~~~------ 306 (567)
T KOG0345|consen 244 SQL----VHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLL-------KKREIFSIHGKMSQKARAKVLEAFRKL------ 306 (567)
T ss_pred HHH----HHHHhccccccEEEEecCcchHHHHHHHHHHHh-------CCCcEEEecchhcchhHHHHHHHHHhc------
Confidence 444 444444667899999999999999999887752 478999999999999999999999986
Q ss_pred CceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccch--hh
Q 005605 344 PGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTE--KS 420 (688)
Q Consensus 344 ~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~--~~ 420 (688)
...+++|||||+||||||||++||++|. |.+.++++||+|||||. +.|.++.|..+ ++
T Consensus 307 -~~~vl~~TDVaARGlDip~iD~VvQ~Dp------------------P~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~a 367 (567)
T KOG0345|consen 307 -SNGVLFCTDVAARGLDIPGIDLVVQFDP------------------PKDPSSFVHRCGRTARAGREGNAIVFLNPREEA 367 (567)
T ss_pred -cCceEEeehhhhccCCCCCceEEEecCC------------------CCChhHHHhhcchhhhccCccceEEEecccHHH
Confidence 6789999999999999999999999777 99999999999999999 88998888764 34
Q ss_pred hcccCCCCCCCcccccCc
Q 005605 421 FNNDLQPQTYPEILRSNL 438 (688)
Q Consensus 421 ~~~~l~~~~~pei~r~~l 438 (688)
|..-|.-...|++.+.+.
T Consensus 368 YveFl~i~~~v~le~~~~ 385 (567)
T KOG0345|consen 368 YVEFLRIKGKVELERIDT 385 (567)
T ss_pred HHHHHHhcCccchhhhcc
Confidence 444344455566655443
No 24
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.4e-44 Score=354.48 Aligned_cols=339 Identities=19% Similarity=0.267 Sum_probs=258.6
Q ss_pred ccCCCCCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEE
Q 005605 41 SLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIA 120 (688)
Q Consensus 41 ~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~ 120 (688)
.+.++|+.+|+++|+.+.++..|+..++++|+..||.|.+|++++.++.||||||++|.+++++...- .+. ++.-+
T Consensus 4 ~t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLse-dP~---giFal 79 (442)
T KOG0340|consen 4 KTAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSE-DPY---GIFAL 79 (442)
T ss_pred cccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhcc-CCC---cceEE
Confidence 44578999999999999999999999999999999999999999999999999999999999998632 222 33334
Q ss_pred EcCCchhhhccHHHHH---HHhhcccccceeceeeeecccc--cccccccccCHHHHHHHHhccc-----cccCCcEEee
Q 005605 121 CTQPRRVAAMSVSRRV---AEEMDVTIGEEVGYSIRFEDCS--SARTVLKYLTDGMLLREAMTDP-----LLERYKVIVL 190 (688)
Q Consensus 121 ~t~p~~~~~~~v~~~v---~~~~~~~~~~~vg~~~~~~~~~--~~~~~i~~lT~G~l~~~~~~~~-----ll~~~~~lIl 190 (688)
+..|.+..+++.++++ .+.++.++...||+.....+.. ..+.++.++|||++-.++.++. .+.+.+++|+
T Consensus 80 vlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVl 159 (442)
T KOG0340|consen 80 VLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVL 159 (442)
T ss_pred EecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEe
Confidence 4445555555566555 4556666667777654333332 3456677899999999988762 3899999999
Q ss_pred cccCcChhhHHHHHHHHHHHHhcCC-CcEEEEecccccHHHHHchhcCCCee-------e-eCCc--ccccceeecCCCc
Q 005605 191 DEAHERTLATDVLFGLLKEVLKNRP-DLKLVVMSATLEAEKFQGYFYGAPLM-------K-VPGR--LHPVEIFYTQEPE 259 (688)
Q Consensus 191 DEaher~~~~d~ll~~l~~i~~~~~-~~~vil~SAT~~~~~~~~~~~~~p~~-------~-v~g~--~~~v~~~~~~~~~ 259 (688)
|||| |+++.+| -+.|+.+.+--| .+|.++||||+.... ...+ ++|+- . ++|. .....+.|+.++.
T Consensus 160 DEAD-rvL~~~f-~d~L~~i~e~lP~~RQtLlfSATitd~i-~ql~-~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~ 235 (442)
T KOG0340|consen 160 DEAD-RVLAGCF-PDILEGIEECLPKPRQTLLFSATITDTI-KQLF-GCPITKSIAFELEVIDGVSTVETLYQGYILVSI 235 (442)
T ss_pred cchh-hhhccch-hhHHhhhhccCCCccceEEEEeehhhHH-HHhh-cCCcccccceEEeccCCCCchhhhhhheeecch
Confidence 9999 6777654 344444444333 469999999994221 1111 12211 1 1222 1223556666664
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCC
Q 005605 260 RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSK 339 (688)
Q Consensus 260 ~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~ 339 (688)
..+ +..+-.++.....++.+++++|+++..+++.++..|... ++.+.+|||.|+|.+|..++..|+.+
T Consensus 236 ~vk-daYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~l---------e~r~~~lHs~m~Q~eR~~aLsrFrs~-- 303 (442)
T KOG0340|consen 236 DVK-DAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNL---------EVRVVSLHSQMPQKERLAALSRFRSN-- 303 (442)
T ss_pred hhh-HHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhh---------ceeeeehhhcchHHHHHHHHHHHhhc--
Confidence 433 222223334444447899999999999999999999874 79999999999999999999999999
Q ss_pred CCCCCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccch
Q 005605 340 EGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTE 418 (688)
Q Consensus 340 ~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~ 418 (688)
..+|++|||||+||+|||.|..|||+++ |.+..+|+||+|||.|+ +.|.+++++++
T Consensus 304 -----~~~iliaTDVAsRGLDIP~V~LVvN~di------------------Pr~P~~yiHRvGRtARAGR~G~aiSivt~ 360 (442)
T KOG0340|consen 304 -----AARILIATDVASRGLDIPTVELVVNHDI------------------PRDPKDYIHRVGRTARAGRKGMAISIVTQ 360 (442)
T ss_pred -----CccEEEEechhhcCCCCCceeEEEecCC------------------CCCHHHHHHhhcchhcccCCcceEEEech
Confidence 8999999999999999999999999999 99999999999999999 89999999997
Q ss_pred hhhc
Q 005605 419 KSFN 422 (688)
Q Consensus 419 ~~~~ 422 (688)
.+.+
T Consensus 361 rDv~ 364 (442)
T KOG0340|consen 361 RDVE 364 (442)
T ss_pred hhHH
Confidence 6654
No 25
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.9e-43 Score=384.52 Aligned_cols=340 Identities=18% Similarity=0.191 Sum_probs=255.5
Q ss_pred cCCCCCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCC------ccccC
Q 005605 42 LINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIET------PDRRR 115 (688)
Q Consensus 42 ~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~------~~~~~ 115 (688)
+..+|+++++++.+.+.+...|+..++++|.++++.+.+|++++++||||||||+++..++++...... ....+
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~ 85 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPR 85 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCce
Confidence 345799999999999999999999999999999999999999999999999999999888775431110 11234
Q ss_pred ceEEEEcCCchhhhccHHHHHHHhhcccccceeceeeeeccc--ccccccccccCHHHHHHHHhcccc-ccCCcEEeecc
Q 005605 116 KMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDE 192 (688)
Q Consensus 116 ~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~~~~~~~~l-l~~~~~lIlDE 192 (688)
.++++|++++..|....+..+....+..++..+|........ ......|.++|||++.+++....+ +.++++||+||
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDE 165 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDE 165 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEec
Confidence 667778888888877777777777766665555532111111 112346889999999998876554 89999999999
Q ss_pred cCcChhhHHHHHHHHHHHHhcCC---CcEEEEecccccH--HHHHchhcCCC-eeeeCCc---ccccceeecCCCchhHH
Q 005605 193 AHERTLATDVLFGLLKEVLKNRP---DLKLVVMSATLEA--EKFQGYFYGAP-LMKVPGR---LHPVEIFYTQEPERDYL 263 (688)
Q Consensus 193 aher~~~~d~ll~~l~~i~~~~~---~~~vil~SAT~~~--~~~~~~~~~~p-~~~v~g~---~~~v~~~~~~~~~~~~~ 263 (688)
||. +++.++...+ +.+....+ ..+.+++|||++. ..+...+.+.| .+.+... ...+.+.+......++
T Consensus 166 ad~-l~~~~f~~~i-~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k- 242 (423)
T PRK04837 166 ADR-MFDLGFIKDI-RWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEK- 242 (423)
T ss_pred HHH-HhhcccHHHH-HHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHH-
Confidence 994 5555544333 33333332 4568999999953 33443333344 3333221 1223333333222333
Q ss_pred HHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCC
Q 005605 264 EAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGP 343 (688)
Q Consensus 264 ~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~ 343 (688)
...+..+......+++|||++++..++.+++.|... ++.+..+||++++++|..+++.|+.|
T Consensus 243 ---~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~---------g~~v~~lhg~~~~~~R~~~l~~F~~g------ 304 (423)
T PRK04837 243 ---MRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAAD---------GHRVGLLTGDVAQKKRLRILEEFTRG------ 304 (423)
T ss_pred ---HHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhC---------CCcEEEecCCCChhHHHHHHHHHHcC------
Confidence 333444444455778999999999999999999763 78899999999999999999999999
Q ss_pred CceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccchhhh
Q 005605 344 PGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (688)
Q Consensus 344 ~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (688)
..+||||||+++||||||+|++|||+|+ |.+.++|+||+|||||. +.|.|+.|+++++.
T Consensus 305 -~~~vLVaTdv~~rGiDip~v~~VI~~d~------------------P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~ 364 (423)
T PRK04837 305 -DLDILVATDVAARGLHIPAVTHVFNYDL------------------PDDCEDYVHRIGRTGRAGASGHSISLACEEYA 364 (423)
T ss_pred -CCcEEEEechhhcCCCccccCEEEEeCC------------------CCchhheEeccccccCCCCCeeEEEEeCHHHH
Confidence 8999999999999999999999999999 99999999999999999 89999999998754
No 26
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.8e-43 Score=343.85 Aligned_cols=367 Identities=17% Similarity=0.195 Sum_probs=293.2
Q ss_pred ccchhhhcccccCCCCCCCcccCCCccCCCCCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChh
Q 005605 16 DETSVSAKLVKTNGVGPGAMMNNNNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKT 95 (688)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKT 95 (688)
+..|+...+..+..+.......-.+..-+.|+++.|...++..+-++|+..++|+|++.||....|++++..+.||+|||
T Consensus 57 ~~~dwk~~l~lpp~d~R~~t~DVt~TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT 136 (459)
T KOG0326|consen 57 NGKDWKATLKLPPKDTRYKTEDVTATKGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKT 136 (459)
T ss_pred cchhhHHhccCCCCCccccccccccccCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCc
Confidence 33444444444444433333333445567899999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhcccccceeceeeeeccccccc--ccccccCHHHHH
Q 005605 96 TQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSAR--TVLKYLTDGMLL 173 (688)
Q Consensus 96 t~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~~--~~i~~lT~G~l~ 173 (688)
.++..|+++..+... ..-++++++||++++++..+++.++++.++..+...+|...-.++....+ -.+.+.|||+.+
T Consensus 137 ~a~~IP~Lekid~~~-~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIl 215 (459)
T KOG0326|consen 137 AAYCIPVLEKIDPKK-NVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRIL 215 (459)
T ss_pred cceechhhhhcCccc-cceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHH
Confidence 999999999875433 33467899999999999999999999999988888888765444443333 345577999999
Q ss_pred HHHhcccc-ccCCcEEeecccCcChhhHHHHHHHHHHHHhc-CCCcEEEEeccccc--HHHHHchhcCCCe-eeeCC--c
Q 005605 174 REAMTDPL-LERYKVIVLDEAHERTLATDVLFGLLKEVLKN-RPDLKLVVMSATLE--AEKFQGYFYGAPL-MKVPG--R 246 (688)
Q Consensus 174 ~~~~~~~l-l~~~~~lIlDEaher~~~~d~ll~~l~~i~~~-~~~~~vil~SAT~~--~~~~~~~~~~~p~-~~v~g--~ 246 (688)
+++..+.- ++++.++|+||||. .+..||- .++.+++.. .++.|++++|||++ +..|.+.+...|. +..-. .
T Consensus 216 DL~~KgVa~ls~c~~lV~DEADK-lLs~~F~-~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLt 293 (459)
T KOG0326|consen 216 DLAKKGVADLSDCVILVMDEADK-LLSVDFQ-PIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELT 293 (459)
T ss_pred HHHhcccccchhceEEEechhhh-hhchhhh-hHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhhh
Confidence 99877654 99999999999994 5666653 444444443 44789999999996 4566655555554 33222 2
Q ss_pred ccccceeecCCCchhHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHH
Q 005605 247 LHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAM 326 (688)
Q Consensus 247 ~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~ 326 (688)
...|.++|....++.++..+-. +..+-.-.+.+|||++.+.++.++.++.+. ++.++.+|+.|.|+.
T Consensus 294 l~GvtQyYafV~e~qKvhCLnt----LfskLqINQsIIFCNS~~rVELLAkKITel---------GyscyyiHakM~Q~h 360 (459)
T KOG0326|consen 294 LKGVTQYYAFVEERQKVHCLNT----LFSKLQINQSIIFCNSTNRVELLAKKITEL---------GYSCYYIHAKMAQEH 360 (459)
T ss_pred hcchhhheeeechhhhhhhHHH----HHHHhcccceEEEeccchHhHHHHHHHHhc---------cchhhHHHHHHHHhh
Confidence 4568999998887777554332 222233457899999999999999999885 799999999999999
Q ss_pred hhcccCCCCCCCCCCCCCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCC
Q 005605 327 QQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGR 406 (688)
Q Consensus 327 r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR 406 (688)
|+++|..|+.| ..+.+||||+.-|||||+.|.+|||+|| |.+.++|.||+||+||
T Consensus 361 RNrVFHdFr~G-------~crnLVctDL~TRGIDiqavNvVINFDf------------------pk~aEtYLHRIGRsGR 415 (459)
T KOG0326|consen 361 RNRVFHDFRNG-------KCRNLVCTDLFTRGIDIQAVNVVINFDF------------------PKNAETYLHRIGRSGR 415 (459)
T ss_pred hhhhhhhhhcc-------ccceeeehhhhhcccccceeeEEEecCC------------------CCCHHHHHHHccCCcc
Confidence 99999999999 8999999999999999999999999999 9999999999999999
Q ss_pred C-CCceEEEccchhhhcc
Q 005605 407 T-QPGKCFRLYTEKSFNN 423 (688)
Q Consensus 407 ~-~~G~~~~l~t~~~~~~ 423 (688)
. ..|.++.|.|-++-.+
T Consensus 416 FGhlGlAInLityedrf~ 433 (459)
T KOG0326|consen 416 FGHLGLAINLITYEDRFN 433 (459)
T ss_pred CCCcceEEEEEehhhhhh
Confidence 9 8999999999766443
No 27
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.5e-42 Score=358.58 Aligned_cols=341 Identities=16% Similarity=0.166 Sum_probs=267.7
Q ss_pred CCCCCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCcc---CCCccccCceEE
Q 005605 43 INRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVD---IETPDRRRKMMI 119 (688)
Q Consensus 43 ~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~---~~~~~~~~~~~i 119 (688)
...|+...+|+...++++++|+..++++|+..|+.+.+|+++++.|.||||||.+|..+.++... .........+++
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi 160 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLII 160 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEe
Confidence 34688899999999999999999999999999999999999999999999999999988776542 111222234567
Q ss_pred EEcCCchhhhccHHHHHHHhh-cccccceeceeeeecccc--cccccccccCHHHHHHHHhcccc--ccCCcEEeecccC
Q 005605 120 ACTQPRRVAAMSVSRRVAEEM-DVTIGEEVGYSIRFEDCS--SARTVLKYLTDGMLLREAMTDPL--LERYKVIVLDEAH 194 (688)
Q Consensus 120 ~~t~p~~~~~~~v~~~v~~~~-~~~~~~~vg~~~~~~~~~--~~~~~i~~lT~G~l~~~~~~~~l--l~~~~~lIlDEah 194 (688)
.||+++++|+..+++.+.+.. +..++..+|...+..... .....|.+.|||+|++++.+..- ..+.+++|+||||
T Consensus 161 ~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD 240 (543)
T KOG0342|consen 161 CPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD 240 (543)
T ss_pred cccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch
Confidence 788888888888888887766 666666777654332211 12567788999999999987663 6777999999999
Q ss_pred cChhhHHHHHHHHHHHHhcCCCcEEEEeccccc--HHHHHchhc-CCCee-ee-CCc----ccccceeecCCCchhHHHH
Q 005605 195 ERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE--AEKFQGYFY-GAPLM-KV-PGR----LHPVEIFYTQEPERDYLEA 265 (688)
Q Consensus 195 er~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~--~~~~~~~~~-~~p~~-~v-~g~----~~~v~~~~~~~~~~~~~~~ 265 (688)
|.++++|-.++.+.+......+|.++||||++ ++.++.-.. ..|+. .+ ++. ...+++-|...+....+-.
T Consensus 241 -rlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~l 319 (543)
T KOG0342|consen 241 -RLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSL 319 (543)
T ss_pred -hhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHH
Confidence 78888876555555444444789999999995 455665433 33432 22 221 2346787888776665443
Q ss_pred HHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCc
Q 005605 266 AIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPG 345 (688)
Q Consensus 266 ~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~ 345 (688)
+...+.+.. ....|+||++|...+..+++.|... .+.|..+||+++|..|..++..|+.. .
T Consensus 320 l~~~LKk~~---~~~KiiVF~sT~~~vk~~~~lL~~~---------dlpv~eiHgk~~Q~kRT~~~~~F~ka-------e 380 (543)
T KOG0342|consen 320 LYTFLKKNI---KRYKIIVFFSTCMSVKFHAELLNYI---------DLPVLEIHGKQKQNKRTSTFFEFCKA-------E 380 (543)
T ss_pred HHHHHHHhc---CCceEEEEechhhHHHHHHHHHhhc---------CCchhhhhcCCcccccchHHHHHhhc-------c
Confidence 433333221 2268999999999999999999863 78999999999999999999999987 7
Q ss_pred eEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccchhhh
Q 005605 346 RKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (688)
Q Consensus 346 ~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (688)
.-|+||||||+||+|+|+|++||++|. |.+.++|+||+|||||. ..|.++.+..+.+.
T Consensus 381 sgIL~cTDVaARGlD~P~V~~VvQ~~~------------------P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El 439 (543)
T KOG0342|consen 381 SGILVCTDVAARGLDIPDVDWVVQYDP------------------PSDPEQYIHRVGRTAREGKEGKALLLLAPWEL 439 (543)
T ss_pred cceEEecchhhccCCCCCceEEEEeCC------------------CCCHHHHHHHhccccccCCCceEEEEeChhHH
Confidence 889999999999999999999999998 99999999999999999 88999999887664
No 28
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=5.7e-42 Score=388.97 Aligned_cols=338 Identities=17% Similarity=0.208 Sum_probs=255.5
Q ss_pred CCCCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcC
Q 005605 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQ 123 (688)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~ 123 (688)
.+|+++++++.+.+.++++|+..++++|.++++.+.+|++++++||||||||+++.+++++..... ....+.++++||+
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~-~~~~~~LIL~PTr 84 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE-LKAPQILVLAPTR 84 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc-cCCCeEEEEeCcH
Confidence 469999999999999999999999999999999999999999999999999999999888765221 1112345666666
Q ss_pred CchhhhccHHHHHHHhh-cccccceeceeeeeccc--ccccccccccCHHHHHHHHhcccc-ccCCcEEeecccCcChhh
Q 005605 124 PRRVAAMSVSRRVAEEM-DVTIGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLA 199 (688)
Q Consensus 124 p~~~~~~~v~~~v~~~~-~~~~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~~~~~~~~l-l~~~~~lIlDEaher~~~ 199 (688)
++..|.......+.... +..+...+|........ ......|.+.|||++.+++....+ +.++++|||||||+ ++.
T Consensus 85 eLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~-ml~ 163 (629)
T PRK11634 85 ELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE-MLR 163 (629)
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHH-Hhh
Confidence 66655555555554433 34444444432111111 112467889999999999887766 89999999999995 566
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEecccccH--HHHHc-hhcCCCeeeeCCcc---cccceeecCCCchhHHHHHHHHHHHH
Q 005605 200 TDVLFGLLKEVLKNRPDLKLVVMSATLEA--EKFQG-YFYGAPLMKVPGRL---HPVEIFYTQEPERDYLEAAIRTVVQI 273 (688)
Q Consensus 200 ~d~ll~~l~~i~~~~~~~~vil~SAT~~~--~~~~~-~~~~~p~~~v~g~~---~~v~~~~~~~~~~~~~~~~~~~l~~i 273 (688)
..+...+...+....++.|+++||||++. ..+.. |+.+...+.+.... ..+.+.|......++.+. +..+
T Consensus 164 ~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~----L~~~ 239 (629)
T PRK11634 164 MGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA----LVRF 239 (629)
T ss_pred cccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHH----HHHH
Confidence 65554444333333447899999999953 44444 44444344443321 234555555544444443 3333
Q ss_pred HhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecC
Q 005605 274 HMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN 353 (688)
Q Consensus 274 ~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTn 353 (688)
........+||||+++..++.+++.|... ++.+..+||+|++.+|.++++.|+.| +.+||||||
T Consensus 240 L~~~~~~~~IVF~~tk~~a~~l~~~L~~~---------g~~~~~lhgd~~q~~R~~il~~Fr~G-------~~~ILVATd 303 (629)
T PRK11634 240 LEAEDFDAAIIFVRTKNATLEVAEALERN---------GYNSAALNGDMNQALREQTLERLKDG-------RLDILIATD 303 (629)
T ss_pred HHhcCCCCEEEEeccHHHHHHHHHHHHhC---------CCCEEEeeCCCCHHHHHHHHHHHhCC-------CCCEEEEcc
Confidence 34455678999999999999999999864 68899999999999999999999999 899999999
Q ss_pred ccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccchhhh
Q 005605 354 IAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (688)
Q Consensus 354 iae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (688)
++++|||||+|++|||+++ |.+.++|+||+|||||. +.|.|+.|++..+.
T Consensus 304 v~arGIDip~V~~VI~~d~------------------P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~ 354 (629)
T PRK11634 304 VAARGLDVERISLVVNYDI------------------PMDSESYVHRIGRTGRAGRAGRALLFVENRER 354 (629)
T ss_pred hHhcCCCcccCCEEEEeCC------------------CCCHHHHHHHhccccCCCCcceEEEEechHHH
Confidence 9999999999999999999 99999999999999999 78999999987654
No 29
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=8.2e-42 Score=383.29 Aligned_cols=348 Identities=14% Similarity=0.119 Sum_probs=261.9
Q ss_pred CCCccCCCCCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccC------CCc
Q 005605 38 NNNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDI------ETP 111 (688)
Q Consensus 38 ~~~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~------~~~ 111 (688)
..+.++.+|+++++++.+.+.+...|+..++++|.++++.+..|+++++++|||||||.++..+++..... ...
T Consensus 115 ~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~ 194 (518)
T PLN00206 115 AVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQ 194 (518)
T ss_pred CCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhcccccccc
Confidence 44566788999999999999999999999999999999999999999999999999999998888754310 111
Q ss_pred cccCceEEEEcCCchhhhccHHHHHHHhhcccccceeceeeeecccc--cccccccccCHHHHHHHHhcccc-ccCCcEE
Q 005605 112 DRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCS--SARTVLKYLTDGMLLREAMTDPL-LERYKVI 188 (688)
Q Consensus 112 ~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~--~~~~~i~~lT~G~l~~~~~~~~l-l~~~~~l 188 (688)
.....++++||+++..|....++.+....+......+|......... .....|.+.|||++.+++..... +.++++|
T Consensus 195 ~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~l 274 (518)
T PLN00206 195 RNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVL 274 (518)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEE
Confidence 22346777888888777766666666655544444444332111111 12356788999999998876654 8999999
Q ss_pred eecccCcChhhHHHHHHHHHHHHhcCCCcEEEEeccccc--HHHHHchhcCCCeeeeCCcc----cccceeecCCCchhH
Q 005605 189 VLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE--AEKFQGYFYGAPLMKVPGRL----HPVEIFYTQEPERDY 262 (688)
Q Consensus 189 IlDEaher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~--~~~~~~~~~~~p~~~v~g~~----~~v~~~~~~~~~~~~ 262 (688)
|+|||| ++++.++.. .+..+....++.|++++|||++ .+.++..+...++....+.. ..+.+.+......++
T Consensus 275 ViDEad-~ml~~gf~~-~i~~i~~~l~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k 352 (518)
T PLN00206 275 VLDEVD-CMLERGFRD-QVMQIFQALSQPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQK 352 (518)
T ss_pred EeecHH-HHhhcchHH-HHHHHHHhCCCCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhH
Confidence 999999 456555433 3334444446789999999994 46677777666654433321 224444444443333
Q ss_pred HHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCC
Q 005605 263 LEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGG 342 (688)
Q Consensus 263 ~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~ 342 (688)
...+...+... ....+++|||++++..++.+++.|... .++.+..+||++++++|..+++.|+.|
T Consensus 353 ~~~l~~~l~~~--~~~~~~~iVFv~s~~~a~~l~~~L~~~--------~g~~~~~~Hg~~~~~eR~~il~~Fr~G----- 417 (518)
T PLN00206 353 KQKLFDILKSK--QHFKPPAVVFVSSRLGADLLANAITVV--------TGLKALSIHGEKSMKERREVMKSFLVG----- 417 (518)
T ss_pred HHHHHHHHHhh--cccCCCEEEEcCCchhHHHHHHHHhhc--------cCcceEEeeCCCCHHHHHHHHHHHHCC-----
Confidence 33333322211 122468999999999999999988753 268899999999999999999999999
Q ss_pred CCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccchhhh
Q 005605 343 PPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (688)
Q Consensus 343 ~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (688)
..+||||||+++||||+|+|++||++|+ |.|.++|+||+|||||. ..|.|+.|++.++.
T Consensus 418 --~~~ILVaTdvl~rGiDip~v~~VI~~d~------------------P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~ 477 (518)
T PLN00206 418 --EVPVIVATGVLGRGVDLLRVRQVIIFDM------------------PNTIKEYIHQIGRASRMGEKGTAIVFVNEEDR 477 (518)
T ss_pred --CCCEEEEecHhhccCCcccCCEEEEeCC------------------CCCHHHHHHhccccccCCCCeEEEEEEchhHH
Confidence 8899999999999999999999999999 99999999999999999 78999999998765
Q ss_pred c
Q 005605 422 N 422 (688)
Q Consensus 422 ~ 422 (688)
.
T Consensus 478 ~ 478 (518)
T PLN00206 478 N 478 (518)
T ss_pred H
Confidence 3
No 30
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=7.5e-41 Score=388.31 Aligned_cols=518 Identities=18% Similarity=0.209 Sum_probs=330.3
Q ss_pred CCCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCC
Q 005605 45 RWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQP 124 (688)
Q Consensus 45 ~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p 124 (688)
.|+++++++.+.+.+..+++. ++++|.++++.+.+|+++++++|||||||+++..++++.. ... .+.+.++ |
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l-~~~---~k~v~i~---P 73 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETF-LAG---LKSIYIV---P 73 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHH-HhC---CcEEEEe---c
Confidence 478899999999999988876 8999999999999999999999999999999888777653 111 2344444 4
Q ss_pred chhhhccHHHHHHH--hhcccccceeceeeeecccccccccccccCHHHHHHHHhcccc-ccCCcEEeecccCcChh-hH
Q 005605 125 RRVAAMSVSRRVAE--EMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTL-AT 200 (688)
Q Consensus 125 ~~~~~~~v~~~v~~--~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~l-l~~~~~lIlDEaher~~-~~ 200 (688)
.+..+.+.++.+.+ ..+..++..+|.... .........+.++|++++..++...+. +.++++||+||+|+... ..
T Consensus 74 ~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~-~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~r 152 (674)
T PRK01172 74 LRSLAMEKYEELSRLRSLGMRVKISIGDYDD-PPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDR 152 (674)
T ss_pred hHHHHHHHHHHHHHHhhcCCeEEEEeCCCCC-ChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCc
Confidence 44444455554443 223333333332110 001113457889999998777766554 89999999999996321 11
Q ss_pred H-HHHHHHHHHHhcCCCcEEEEecccc-cHHHHHchhcCCCeeeeCCccccccee--ecC-----CCchhHHHHHHHHHH
Q 005605 201 D-VLFGLLKEVLKNRPDLKLVVMSATL-EAEKFQGYFYGAPLMKVPGRLHPVEIF--YTQ-----EPERDYLEAAIRTVV 271 (688)
Q Consensus 201 d-~ll~~l~~i~~~~~~~~vil~SAT~-~~~~~~~~~~~~p~~~v~g~~~~v~~~--~~~-----~~~~~~~~~~~~~l~ 271 (688)
+ .+..++..+....++.|+|++|||+ +...+++|++ ++.+....+..|++.. |.. ....... .....+.
T Consensus 153 g~~le~ll~~~~~~~~~~riI~lSATl~n~~~la~wl~-~~~~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~-~~~~~i~ 230 (674)
T PRK01172 153 GPTLETVLSSARYVNPDARILALSATVSNANELAQWLN-ASLIKSNFRPVPLKLGILYRKRLILDGYERSQV-DINSLIK 230 (674)
T ss_pred cHHHHHHHHHHHhcCcCCcEEEEeCccCCHHHHHHHhC-CCccCCCCCCCCeEEEEEecCeeeecccccccc-cHHHHHH
Confidence 1 2334444444445688999999999 7888998875 4444444555554422 111 1111110 1112222
Q ss_pred HHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCC----------------CCCeEEEEecCCCCHHHhhcccCCCC
Q 005605 272 QIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQ----------------VGPVKVVPLYSTLPPAMQQKIFEPAP 335 (688)
Q Consensus 272 ~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~----------------~~~~~v~~lh~~l~~~~r~~~~~~~~ 335 (688)
... ..++++|||++++++++.++..|.+.......- .-...+..+||+|++++|..+++.|+
T Consensus 231 ~~~--~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~ 308 (674)
T PRK01172 231 ETV--NDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFR 308 (674)
T ss_pred HHH--hCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHH
Confidence 222 346899999999999999999997653211000 00124778999999999999999999
Q ss_pred CCCCCCCCCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCCC---CceE
Q 005605 336 PPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ---PGKC 412 (688)
Q Consensus 336 ~g~~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~~---~G~~ 412 (688)
+| ..+|||||+++++|+|+|+..+||+ |. ..|+.. ...|+|..+|.||+|||||.+ .|.+
T Consensus 309 ~g-------~i~VLvaT~~la~Gvnipa~~VII~-~~---~~~~~~------~~~~~s~~~~~Qm~GRAGR~g~d~~g~~ 371 (674)
T PRK01172 309 NR-------YIKVIVATPTLAAGVNLPARLVIVR-DI---TRYGNG------GIRYLSNMEIKQMIGRAGRPGYDQYGIG 371 (674)
T ss_pred cC-------CCeEEEecchhhccCCCcceEEEEc-Cc---eEeCCC------CceeCCHHHHHHHhhcCCCCCCCCcceE
Confidence 99 8999999999999999999887775 32 233321 223899999999999999984 6777
Q ss_pred EEccc-hhhhc---ccCCCCCCCcccccCcH------HHHHHHHHcCC----CCCccc---cCC--CCCc---HHHHHHH
Q 005605 413 FRLYT-EKSFN---NDLQPQTYPEILRSNLA------NTVLTLKKLGI----DDLVHF---DFM--DPPA---PETLMRA 470 (688)
Q Consensus 413 ~~l~t-~~~~~---~~l~~~~~pei~r~~l~------~~~L~l~~~~~----~~~~~f---~~~--~~P~---~~~i~~a 470 (688)
+.+.. .++++ ..+... |+-..+.|. .-+|...+.|. .++.+| .|+ ++++ .+.++.|
T Consensus 372 ~i~~~~~~~~~~~~~~l~~~--~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~~~~~~l~~~v~~~ 449 (674)
T PRK01172 372 YIYAASPASYDAAKKYLSGE--PEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQNGVDEIDYYIESS 449 (674)
T ss_pred EEEecCcccHHHHHHHHcCC--CCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhcCchHHHHHHHHHH
Confidence 66643 22222 212222 222222221 12344444443 333333 333 4332 4679999
Q ss_pred HHHHHHcCCccCCC--CcChhhhhcccCCCChhhhhhhhhcCCCC-ChHHHHHHHHHhcCCCCCCCChHHH--HHHHHHH
Q 005605 471 LEVLNYLGALDDDG--NLTEMGEKMSEFPLDPQMSKMLVESPKYN-CSNEILSISAMLSVPNCFVRPREAQ--KAADEAK 545 (688)
Q Consensus 471 ~~~L~~lgald~~~--~lT~lG~~~~~lpl~p~~~k~ll~~~~~~-c~~~~l~i~a~ls~~~~f~~~~~~~--~~~~~~~ 545 (688)
++.|...|+|+.++ .+|++|+.++.+|++|..++.+..+.... ....++.+.+.. .+ | .|.... +......
T Consensus 450 l~~L~~~~~i~~~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~l~~~~~~--~e-~-~~~~~~~~~~~~~~~ 525 (674)
T PRK01172 450 LKFLKENGFIKGDVTLRATRLGKLTSDLYIDPESALILKSAFDHDYDEDLALYYISLC--RE-I-IPANTRDDYYAMEFL 525 (674)
T ss_pred HHHHHHCCCcccCCcEeECHHHHHHHHhCCCHHHHHHHHHHhhccCCHHHHHHHhhcC--cc-c-cccccchHHHHHHHH
Confidence 99999999998654 67999999999999999999998876543 223344444322 22 2 221111 1111111
Q ss_pred HHhCC--CCCcHHHHHHHHHHHHhcCCChhhHHhhcCCHHHHHHHHHHHHHHHHH
Q 005605 546 ARFGH--IDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRI 598 (688)
Q Consensus 546 ~~~~~--~~sD~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~i~~qL~~~ 598 (688)
..... ....++-..-+.++|.+.......+..+++..+.++.+.....++...
T Consensus 526 ~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~~a 580 (674)
T PRK01172 526 EDIGVIDGDISAAKTAMVLRGWISEASMQKITDTYGIAPGDVQARASSADWISYS 580 (674)
T ss_pred HHhccccchhHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 11111 112334445566888876666667888889988888877766666533
No 31
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.1e-41 Score=377.56 Aligned_cols=339 Identities=15% Similarity=0.190 Sum_probs=254.9
Q ss_pred CCCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCC-----ccccCceEE
Q 005605 45 RWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIET-----PDRRRKMMI 119 (688)
Q Consensus 45 ~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~-----~~~~~~~~i 119 (688)
+|+++++++++.+.+.+.|+..++++|.++++.+.+|+++++++|||||||.++..++++...... ....+.+++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 589999999999999999999999999999999999999999999999999999988876542111 011235677
Q ss_pred EEcCCchhhhccHHHHHHHhhcccccceeceeeeecc--cccccccccccCHHHHHHHHhcccc-ccCCcEEeecccCcC
Q 005605 120 ACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFED--CSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHER 196 (688)
Q Consensus 120 ~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~--~~~~~~~i~~lT~G~l~~~~~~~~l-l~~~~~lIlDEaher 196 (688)
+||+++..|.......+....+......+|......+ .......|.++|||+++..+....+ +.++++||+|||| +
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah-~ 160 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEAD-R 160 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHH-H
Confidence 7777777766666666655555444444443211111 1112457889999999998876665 8999999999999 4
Q ss_pred hhhHHHHHHHHHHHHhcCCCcEEEEecccccH--HHHHchhcCCCe-eeeCCc---ccccceeecCCCchhHHHHHHHHH
Q 005605 197 TLATDVLFGLLKEVLKNRPDLKLVVMSATLEA--EKFQGYFYGAPL-MKVPGR---LHPVEIFYTQEPERDYLEAAIRTV 270 (688)
Q Consensus 197 ~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~~--~~~~~~~~~~p~-~~v~g~---~~~v~~~~~~~~~~~~~~~~~~~l 270 (688)
+++.++...+...+....+..|++++|||++. ..+...+...|. +.+..+ ...+.+++.......+ ...+
T Consensus 161 ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k----~~~l 236 (456)
T PRK10590 161 MLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRK----RELL 236 (456)
T ss_pred HhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHH----HHHH
Confidence 66655544433333333446799999999953 455555444443 333222 1234444443333222 2233
Q ss_pred HHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEE
Q 005605 271 VQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVV 350 (688)
Q Consensus 271 ~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlv 350 (688)
..+.......++|||++++.+++.+++.|... ++.+..+||++++++|.++++.|++| ..+|||
T Consensus 237 ~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~---------g~~~~~lhg~~~~~~R~~~l~~F~~g-------~~~iLV 300 (456)
T PRK10590 237 SQMIGKGNWQQVLVFTRTKHGANHLAEQLNKD---------GIRSAAIHGNKSQGARTRALADFKSG-------DIRVLV 300 (456)
T ss_pred HHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHC---------CCCEEEEECCCCHHHHHHHHHHHHcC-------CCcEEE
Confidence 34444455678999999999999999999763 68899999999999999999999999 899999
Q ss_pred ecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccchhhhc
Q 005605 351 STNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFN 422 (688)
Q Consensus 351 aTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~~ 422 (688)
|||++++|||||+|++||||++ |.+.++|+||+|||||. ..|.|+.|++.++..
T Consensus 301 aTdv~~rGiDip~v~~VI~~~~------------------P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~ 355 (456)
T PRK10590 301 ATDIAARGLDIEELPHVVNYEL------------------PNVPEDYVHRIGRTGRAAATGEALSLVCVDEHK 355 (456)
T ss_pred EccHHhcCCCcccCCEEEEeCC------------------CCCHHHhhhhccccccCCCCeeEEEEecHHHHH
Confidence 9999999999999999999999 99999999999999999 889999999987653
No 32
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.2e-41 Score=384.44 Aligned_cols=338 Identities=17% Similarity=0.192 Sum_probs=254.7
Q ss_pred CCCCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCC------CccccCce
Q 005605 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIE------TPDRRRKM 117 (688)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~------~~~~~~~~ 117 (688)
.+|+++++++.+.+.|.+.|+..++++|.+.|+.+.+|+++++++|||||||.+|..++++..... .....+.+
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 369999999999999999999999999999999999999999999999999999998887643110 11123467
Q ss_pred EEEEcCCchhhhccHHHHHHHhhcccccceeceeeeeccc--ccccccccccCHHHHHHHHhccc--cccCCcEEeeccc
Q 005605 118 MIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDP--LLERYKVIVLDEA 193 (688)
Q Consensus 118 ~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~~~~~~~~--ll~~~~~lIlDEa 193 (688)
+++|++++..|....+..+....+..+...+|........ ......|.+.|+|++++++.... .+..+++||||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 7888888888877777777666666555555532211111 11235688999999999886643 3889999999999
Q ss_pred CcChhhHHHHHHHHHHHHhcCC---CcEEEEecccccH--HHHHchhcCCC-eeeeCCcc---cccceeecCCCchhHHH
Q 005605 194 HERTLATDVLFGLLKEVLKNRP---DLKLVVMSATLEA--EKFQGYFYGAP-LMKVPGRL---HPVEIFYTQEPERDYLE 264 (688)
Q Consensus 194 her~~~~d~ll~~l~~i~~~~~---~~~vil~SAT~~~--~~~~~~~~~~p-~~~v~g~~---~~v~~~~~~~~~~~~~~ 264 (688)
|. +++.++...+ ..+.+..+ +.|+++||||++. ..+...+.+.| .+.+.... ..+.+.+......++
T Consensus 169 h~-lld~gf~~~i-~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k-- 244 (572)
T PRK04537 169 DR-MFDLGFIKDI-RFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEK-- 244 (572)
T ss_pred HH-HhhcchHHHH-HHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHH--
Confidence 94 5555443332 33333222 6799999999954 33333333334 33332221 223444444333333
Q ss_pred HHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCC
Q 005605 265 AAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPP 344 (688)
Q Consensus 265 ~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~ 344 (688)
...+..++......++|||+++++.++.+++.|.+. ++.+..+||+|++.+|.++++.|++|
T Consensus 245 --~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~---------g~~v~~lhg~l~~~eR~~il~~Fr~G------- 306 (572)
T PRK04537 245 --QTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERH---------GYRVGVLSGDVPQKKRESLLNRFQKG------- 306 (572)
T ss_pred --HHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHc---------CCCEEEEeCCCCHHHHHHHHHHHHcC-------
Confidence 333444444455678999999999999999999764 68899999999999999999999999
Q ss_pred ceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccchhhh
Q 005605 345 GRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (688)
Q Consensus 345 ~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (688)
..+||||||++++|||||+|++|||||+ |.+.++|+||+|||||. ..|.|+.|+++.+.
T Consensus 307 ~~~VLVaTdv~arGIDip~V~~VInyd~------------------P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~ 366 (572)
T PRK04537 307 QLEILVATDVAARGLHIDGVKYVYNYDL------------------PFDAEDYVHRIGRTARLGEEGDAISFACERYA 366 (572)
T ss_pred CCeEEEEehhhhcCCCccCCCEEEEcCC------------------CCCHHHHhhhhcccccCCCCceEEEEecHHHH
Confidence 8999999999999999999999999999 99999999999999999 88999999987654
No 33
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.6e-42 Score=354.14 Aligned_cols=361 Identities=17% Similarity=0.219 Sum_probs=275.4
Q ss_pred cCCCccCCCCCCCCCChHHHHHHHH-hcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccC-----CC
Q 005605 37 NNNNSLINRWNGKPYSQRYYEILEK-RKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDI-----ET 110 (688)
Q Consensus 37 ~~~~~~~~~f~~~~l~~~~~~~l~~-~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~-----~~ 110 (688)
.+.+.....|..+++++.+.+.|+. +++-.++.+|.+.||.+.+|+++.|-++||||||.+|..|+++...- ..
T Consensus 129 ~e~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~R 208 (708)
T KOG0348|consen 129 SEAPFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQR 208 (708)
T ss_pred cccccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccc
Confidence 4555667889999999999988875 58889999999999999999999999999999999999998765421 11
Q ss_pred ccccCceEEEEcCCchhhhccHHHHHHHhhcccc-cceeceeeeecccccc--cccccccCHHHHHHHHhcccc--ccCC
Q 005605 111 PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTI-GEEVGYSIRFEDCSSA--RTVLKYLTDGMLLREAMTDPL--LERY 185 (688)
Q Consensus 111 ~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~-~~~vg~~~~~~~~~~~--~~~i~~lT~G~l~~~~~~~~l--l~~~ 185 (688)
..+.-+++|+||+++..|.+.+++.+.+....-+ |..+|+..+....... ...|.+.|||++++++.+... +++.
T Consensus 209 s~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~L 288 (708)
T KOG0348|consen 209 SDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRL 288 (708)
T ss_pred cCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeee
Confidence 2334468899999999999988888877654332 4455655444443333 344567799999999988765 8899
Q ss_pred cEEeecccCcChhhHHH---HHHHHHHHHh----cC------CCcEEEEeccccc--HHHHHchhcCCCeeee-------
Q 005605 186 KVIVLDEAHERTLATDV---LFGLLKEVLK----NR------PDLKLVVMSATLE--AEKFQGYFYGAPLMKV------- 243 (688)
Q Consensus 186 ~~lIlDEaher~~~~d~---ll~~l~~i~~----~~------~~~~vil~SAT~~--~~~~~~~~~~~p~~~v------- 243 (688)
.+|||||+| |.++.++ +-.+++.+-. .. +.++-+|+|||+. +..+++.-...|+..-
T Consensus 289 RwlVlDEaD-rlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~ 367 (708)
T KOG0348|consen 289 RWLVLDEAD-RLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQ 367 (708)
T ss_pred eEEEecchh-HHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhh
Confidence 999999999 6777776 3444444421 11 1467899999993 6777766555554332
Q ss_pred ------------CC----------cccccceeecCCCchhHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHH
Q 005605 244 ------------PG----------RLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITK 301 (688)
Q Consensus 244 ------------~g----------~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~ 301 (688)
+| ......++|...|..-.+-++...+.+....+..-+++||+++.+.++.-++.+..
T Consensus 368 ~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~ 447 (708)
T KOG0348|consen 368 LNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSE 447 (708)
T ss_pred cCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHh
Confidence 11 01123456667776666667777777777766777899999999999999999987
Q ss_pred HHhh----c-C--------CCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCcccCCeEEEE
Q 005605 302 EITN----M-G--------DQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVI 368 (688)
Q Consensus 302 ~~~~----~-~--------~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~VI 368 (688)
.+.. . + ....+.+++-|||+|.|++|..+|+.|... .+-|++|||||+||||+|+|++||
T Consensus 448 ~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~-------~~~VLLcTDVAaRGLDlP~V~~vV 520 (708)
T KOG0348|consen 448 ALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHS-------RRAVLLCTDVAARGLDLPHVGLVV 520 (708)
T ss_pred hhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccc-------cceEEEehhhhhccCCCCCcCeEE
Confidence 5432 0 0 012357899999999999999999999987 788999999999999999999999
Q ss_pred cCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccch--hhhcc
Q 005605 369 DPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTE--KSFNN 423 (688)
Q Consensus 369 d~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~--~~~~~ 423 (688)
.|+- |.+.++|+||+|||.|. +.|.+..|..+ .+|.+
T Consensus 521 QYd~------------------P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~ 560 (708)
T KOG0348|consen 521 QYDP------------------PFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVN 560 (708)
T ss_pred EeCC------------------CCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHH
Confidence 9666 99999999999999999 88988877654 44444
No 34
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-41 Score=350.69 Aligned_cols=347 Identities=18% Similarity=0.247 Sum_probs=289.2
Q ss_pred CCCccCCCCCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCc----cCCCccc
Q 005605 38 NNNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGV----DIETPDR 113 (688)
Q Consensus 38 ~~~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~----~~~~~~~ 113 (688)
..+.+..+|...++++.+...+.+..+..+|++|.+++|....|++|+.++.||||||.+|..+.+... ++.....
T Consensus 217 s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~g 296 (731)
T KOG0339|consen 217 SPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEG 296 (731)
T ss_pred CCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCC
Confidence 344556789999999999999999999999999999999999999999999999999999997776543 2222334
Q ss_pred cCceEEEEcCCchhhhccHHHHHHHhhcccccceeceeeeeccccc--ccccccccCHHHHHHHHhcccc-ccCCcEEee
Q 005605 114 RRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSS--ARTVLKYLTDGMLLREAMTDPL-LERYKVIVL 190 (688)
Q Consensus 114 ~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~--~~~~i~~lT~G~l~~~~~~~~l-l~~~~~lIl 190 (688)
+-+++++||+++..|+.++++.+++.++..+....|....+++... ....|.++|||+++++..-.+. +.++++|||
T Consensus 297 Pi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~ 376 (731)
T KOG0339|consen 297 PIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVL 376 (731)
T ss_pred CeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEE
Confidence 4567889999999999999999999999988888887766665443 3566889999999998876665 999999999
Q ss_pred cccCcChhhHHHHHHHHHHHHhcCCCcEEEEecccc--cHHHHHchhcCCCeeeeCCc----ccccceeecCCCch-hHH
Q 005605 191 DEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATL--EAEKFQGYFYGAPLMKVPGR----LHPVEIFYTQEPER-DYL 263 (688)
Q Consensus 191 DEaher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~--~~~~~~~~~~~~p~~~v~g~----~~~v~~~~~~~~~~-~~~ 263 (688)
||+| |+.+++|..++-....+.+|+.|+|+||||+ .++.+++-+...|+-.+.|. ...|++....++.. .++
T Consensus 377 DEad-rmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl 455 (731)
T KOG0339|consen 377 DEAD-RMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKL 455 (731)
T ss_pred echh-hhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHH
Confidence 9999 8999988776655556678999999999999 46888888888888776653 23444444333332 233
Q ss_pred HHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCC
Q 005605 264 EAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGP 343 (688)
Q Consensus 264 ~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~ 343 (688)
.-+ +.++......|++|+|++-+.+.+.++..|... ++.+..|||++.|.+|++++..|+.+
T Consensus 456 ~wl---~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk---------~~~v~llhgdkdqa~rn~~ls~fKkk------ 517 (731)
T KOG0339|consen 456 NWL---LRHLVEFSSEGKVLIFVTKKADAEEIAANLKLK---------GFNVSLLHGDKDQAERNEVLSKFKKK------ 517 (731)
T ss_pred HHH---HHHhhhhccCCcEEEEEeccCCHHHHHHHhccc---------cceeeeecCchhhHHHHHHHHHHhhc------
Confidence 322 333444456799999999999999999998753 89999999999999999999999988
Q ss_pred CceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccchhhhc
Q 005605 344 PGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFN 422 (688)
Q Consensus 344 ~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~~ 422 (688)
...|++|||+|+||+||++++-|||||+ --+.+.|.||+||+||+ ..|.+|+|+|+++.+
T Consensus 518 -~~~VlvatDvaargldI~~ikTVvnyD~------------------ardIdththrigrtgRag~kGvayTlvTeKDa~ 578 (731)
T KOG0339|consen 518 -RKPVLVATDVAARGLDIPSIKTVVNYDF------------------ARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAE 578 (731)
T ss_pred -CCceEEEeeHhhcCCCccccceeecccc------------------cchhHHHHHHhhhcccccccceeeEEechhhHH
Confidence 7899999999999999999999999999 78999999999999999 789999999998865
No 35
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=6.4e-41 Score=370.50 Aligned_cols=340 Identities=17% Similarity=0.214 Sum_probs=258.2
Q ss_pred CCCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCcc---CCCccccCceEEEE
Q 005605 45 RWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVD---IETPDRRRKMMIAC 121 (688)
Q Consensus 45 ~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~---~~~~~~~~~~~i~~ 121 (688)
+|+++++++.+.+.++..|+..++++|.++++.+.+|+++++++|||||||+++..++++... .......+.++++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 599999999999999999999999999999999999999999999999999998877765431 11111123456667
Q ss_pred cCCchhhhccHHHHHHHhhcccccceeceeeeeccc--ccccccccccCHHHHHHHHhcccc-ccCCcEEeecccCcChh
Q 005605 122 TQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTL 198 (688)
Q Consensus 122 t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~~~~~~~~l-l~~~~~lIlDEaher~~ 198 (688)
++++..|....+..++...+..++...|........ ...+..|.+.|+|++++.+....+ +.++++||+|||| +++
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah-~~l 160 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEAD-RML 160 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHH-HHh
Confidence 777777766666777776666666666543211111 123456889999999998887766 8999999999999 466
Q ss_pred hHHHHHHHHHHHHh-cCCCcEEEEeccccc---HHHHHchhcCCCeee-eCCc---ccccceeecCCCchhHHHHHHHHH
Q 005605 199 ATDVLFGLLKEVLK-NRPDLKLVVMSATLE---AEKFQGYFYGAPLMK-VPGR---LHPVEIFYTQEPERDYLEAAIRTV 270 (688)
Q Consensus 199 ~~d~ll~~l~~i~~-~~~~~~vil~SAT~~---~~~~~~~~~~~p~~~-v~g~---~~~v~~~~~~~~~~~~~~~~~~~l 270 (688)
+..+.. .+..+.. .+...|+++||||++ ...+...+...|+.. +... ...+.+.|...... ......+
T Consensus 161 ~~~~~~-~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~---~~k~~~l 236 (434)
T PRK11192 161 DMGFAQ-DIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDL---EHKTALL 236 (434)
T ss_pred CCCcHH-HHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCH---HHHHHHH
Confidence 655433 3333333 334679999999995 345666665555432 2211 12244444433221 2234445
Q ss_pred HHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEE
Q 005605 271 VQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVV 350 (688)
Q Consensus 271 ~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlv 350 (688)
..+......+++|||++++++++.+++.|... ++.+..+||+|++.+|..+++.|+.| ..+|||
T Consensus 237 ~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~---------~~~~~~l~g~~~~~~R~~~l~~f~~G-------~~~vLV 300 (434)
T PRK11192 237 CHLLKQPEVTRSIVFVRTRERVHELAGWLRKA---------GINCCYLEGEMVQAKRNEAIKRLTDG-------RVNVLV 300 (434)
T ss_pred HHHHhcCCCCeEEEEeCChHHHHHHHHHHHhC---------CCCEEEecCCCCHHHHHHHHHHHhCC-------CCcEEE
Confidence 55555556789999999999999999999863 68899999999999999999999999 899999
Q ss_pred ecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccchhhhcc
Q 005605 351 STNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFNN 423 (688)
Q Consensus 351 aTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~~~ 423 (688)
|||++++|||||+|++|||+|+ |.|.++|+||+|||||. ..|.|+.|++..++..
T Consensus 301 aTd~~~~GiDip~v~~VI~~d~------------------p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~ 356 (434)
T PRK11192 301 ATDVAARGIDIDDVSHVINFDM------------------PRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLL 356 (434)
T ss_pred EccccccCccCCCCCEEEEECC------------------CCCHHHHhhcccccccCCCCceEEEEecHHHHHH
Confidence 9999999999999999999998 99999999999999999 8899999999877643
No 36
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=6.6e-40 Score=383.01 Aligned_cols=527 Identities=17% Similarity=0.213 Sum_probs=340.5
Q ss_pred CCCCCCCChHHHHHHHHhcCCCChHHHHHHHHH-HhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcC
Q 005605 45 RWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQV-LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQ 123 (688)
Q Consensus 45 ~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~-i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~ 123 (688)
.|+++++++.+.+.++++|+..++++|.++++. +.+|+++++++|||||||..+..+++.... . ..+.+.++|++
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~-~---~~kal~i~P~r 77 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA-R---GGKALYIVPLR 77 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh-c---CCcEEEEeChH
Confidence 488899999999999999999999999999998 889999999999999999999888776541 1 12345566655
Q ss_pred CchhhhccHHHHHHHhhcccccceeceeeeecccccccccccccCHHHHHHHHhccc-cccCCcEEeecccCcChhh---
Q 005605 124 PRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLA--- 199 (688)
Q Consensus 124 p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~-ll~~~~~lIlDEaher~~~--- 199 (688)
.+..+......++.. .+..++...|...... .......|.++|++++..++.... .+.+++++|+||+|. ..+
T Consensus 78 aLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~-~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~-l~d~~r 154 (737)
T PRK02362 78 ALASEKFEEFERFEE-LGVRVGISTGDYDSRD-EWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHL-IDSANR 154 (737)
T ss_pred HHHHHHHHHHHHhhc-CCCEEEEEeCCcCccc-cccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccc-cCCCcc
Confidence 554444333333221 2444444444321111 112346788999999877766543 488999999999995 222
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEecccc-cHHHHHchhcCCCeeeeCCcccccce--------eecCC----CchhHHHHH
Q 005605 200 TDVLFGLLKEVLKNRPDLKLVVMSATL-EAEKFQGYFYGAPLMKVPGRLHPVEI--------FYTQE----PERDYLEAA 266 (688)
Q Consensus 200 ~d~ll~~l~~i~~~~~~~~vil~SAT~-~~~~~~~~~~~~p~~~v~g~~~~v~~--------~~~~~----~~~~~~~~~ 266 (688)
...+..++.++....++.|+|++|||+ +.+.+++|++.. .+....+..++.. ++... ..... ...
T Consensus 155 g~~le~il~rl~~~~~~~qii~lSATl~n~~~la~wl~~~-~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~-~~~ 232 (737)
T PRK02362 155 GPTLEVTLAKLRRLNPDLQVVALSATIGNADELADWLDAE-LVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSK-DDT 232 (737)
T ss_pred hHHHHHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHhCCC-cccCCCCCCCCeeeEecCCeeccccccccCCCccc-hHH
Confidence 222344455555555689999999999 678888887532 2211111111111 11110 00000 122
Q ss_pred HHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhh----------------cCCC-----------CCCeEEEEec
Q 005605 267 IRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITN----------------MGDQ-----------VGPVKVVPLY 319 (688)
Q Consensus 267 ~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~----------------~~~~-----------~~~~~v~~lh 319 (688)
...+...+. ..+++|||++++++++.++..|...... +... .-...+..+|
T Consensus 233 ~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hH 310 (737)
T PRK02362 233 LNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHH 310 (737)
T ss_pred HHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeec
Confidence 333444332 5689999999999999999998764320 0000 0013588999
Q ss_pred CCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHh
Q 005605 320 STLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQ 399 (688)
Q Consensus 320 ~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~q 399 (688)
|+|++++|..+++.|++| ..+||+||+++++|||+|++++||+. ..+||+..+. .|.+..+|.|
T Consensus 311 agl~~~eR~~ve~~Fr~G-------~i~VLvaT~tla~GvnlPa~~VVI~~----~~~yd~~~g~-----~~~s~~~y~Q 374 (737)
T PRK02362 311 AGLSREHRELVEDAFRDR-------LIKVISSTPTLAAGLNLPARRVIIRD----YRRYDGGAGM-----QPIPVLEYHQ 374 (737)
T ss_pred CCCCHHHHHHHHHHHHcC-------CCeEEEechhhhhhcCCCceEEEEec----ceeecCCCCc-----eeCCHHHHHH
Confidence 999999999999999999 89999999999999999999999963 3568876544 3999999999
Q ss_pred hccccCCCC---CceEEEccchhh-----hcccCCCCCCCccccc------CcHHHHHHHHHcCCC----CCccc---cC
Q 005605 400 RSGRAGRTQ---PGKCFRLYTEKS-----FNNDLQPQTYPEILRS------NLANTVLTLKKLGID----DLVHF---DF 458 (688)
Q Consensus 400 R~GRaGR~~---~G~~~~l~t~~~-----~~~~l~~~~~pei~r~------~l~~~~L~l~~~~~~----~~~~f---~~ 458 (688)
|+|||||.+ .|.||.+....+ |+..+.. .|+-..+ .|...++...+.|.- ++.+| .|
T Consensus 375 m~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~--~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf 452 (737)
T PRK02362 375 MAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIWA--DPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATF 452 (737)
T ss_pred HhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHhC--CCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhCh
Confidence 999999983 499999986532 2221111 2332222 344556666665532 12111 33
Q ss_pred CCCC------cHHHHHHHHHHHHHcCCccCCCC---cChhhhhcccCCCChhhhhhhhhcCCCC---ChHHHHHHHHHhc
Q 005605 459 MDPP------APETLMRALEVLNYLGALDDDGN---LTEMGEKMSEFPLDPQMSKMLVESPKYN---CSNEILSISAMLS 526 (688)
Q Consensus 459 ~~~P------~~~~i~~a~~~L~~lgald~~~~---lT~lG~~~~~lpl~p~~~k~ll~~~~~~---c~~~~l~i~a~ls 526 (688)
...+ -.+.++.+++.|.+.|+|+.++. .|++|+.++.++++|..+..+..+.... ....++.++|...
T Consensus 453 ~~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~~~l~~i~~~~ 532 (737)
T PRK02362 453 YATQTDDTGRLERVVDDVLDFLERNGMIEEDGETLEATELGHLVSRLYIDPLSAAEIIDGLEAAKKPTDLGLLHLVCSTP 532 (737)
T ss_pred HHhhccchHHHHHHHHHHHHHHHHCCCeeecCCeEeEChHHHHHHHhcCCHHHHHHHHHHhhhcccCchHHHHHHhhcCc
Confidence 2222 23568999999999999987764 8999999999999999999998775532 2234555554322
Q ss_pred CC-CCCCCChHHHHHHHHHH----HHh-CC-----CCCcHH------HHHHHHHHHHhcCCChhhHHhhcCCHHHHHHHH
Q 005605 527 VP-NCFVRPREAQKAADEAK----ARF-GH-----IDGDHL------TLLNVYHAYKQNNEDPSWCYDNFVNHRALKSAD 589 (688)
Q Consensus 527 ~~-~~f~~~~~~~~~~~~~~----~~~-~~-----~~sD~~------~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~ 589 (688)
.- ++..+ .++.+...... ..+ .. ...|+- -..-++++|.+.......+.++++..+.++.+.
T Consensus 533 e~~~~~~r-~~e~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~ll~~~i~~~~~~~i~~~~~~~~gdl~~~~ 611 (737)
T PRK02362 533 DMYELYLR-SGDYEWLNEYLYEHEDELLGDVPSEFEDDEFEDFLSAVKTALLLEDWIDEVDEERITERYGVGPGDIRGKV 611 (737)
T ss_pred cccccccC-hhHHHHHHHHHHhcccchhccCCchhhhhhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCchHHHHHH
Confidence 22 22222 22222222110 001 00 111221 223455788876666778888999888888777
Q ss_pred HHHHHHHHHHHH
Q 005605 590 NVRQQLVRIMAR 601 (688)
Q Consensus 590 ~i~~qL~~~l~~ 601 (688)
+...+|...+.+
T Consensus 612 ~~~~~l~~a~~~ 623 (737)
T PRK02362 612 ETAEWLLHAAER 623 (737)
T ss_pred HHHHHHHHHHHH
Confidence 777777555443
No 37
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.2e-40 Score=366.62 Aligned_cols=339 Identities=18% Similarity=0.211 Sum_probs=255.4
Q ss_pred CCCCCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCC------ccccCc
Q 005605 43 INRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIET------PDRRRK 116 (688)
Q Consensus 43 ~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~------~~~~~~ 116 (688)
...|.++++++.+.+.|.+.|+..++++|.++++.+.+|+++++.++||||||+++..++++...-.. ....+.
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~a 165 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRA 165 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceE
Confidence 45799999999999999999999999999999999999999999999999999999988876541111 012346
Q ss_pred eEEEEcCCchhhhccHHHHHHHhhcccccceeceeeeec---ccccccccccccCHHHHHHHHhccc-cccCCcEEeecc
Q 005605 117 MMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFE---DCSSARTVLKYLTDGMLLREAMTDP-LLERYKVIVLDE 192 (688)
Q Consensus 117 ~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~---~~~~~~~~i~~lT~G~l~~~~~~~~-ll~~~~~lIlDE 192 (688)
++++||+++..+....++.+....+..+...+|...... ........|.++|||+++.+..... .+.++++||+||
T Consensus 166 Lil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDE 245 (475)
T PRK01297 166 LIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDE 245 (475)
T ss_pred EEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEech
Confidence 778888888887777777776666665555555321111 1112345788999999988776544 489999999999
Q ss_pred cCcChhhHHHHHHHHHHHHhcC---CCcEEEEeccccc--HHHHHchhcCCCee-eeCCc---ccccceeecCCCchhHH
Q 005605 193 AHERTLATDVLFGLLKEVLKNR---PDLKLVVMSATLE--AEKFQGYFYGAPLM-KVPGR---LHPVEIFYTQEPERDYL 263 (688)
Q Consensus 193 aher~~~~d~ll~~l~~i~~~~---~~~~vil~SAT~~--~~~~~~~~~~~p~~-~v~g~---~~~v~~~~~~~~~~~~~ 263 (688)
+|. .++.++. ..++.+.... .+.+++++|||+. ...+.+.+...|.+ .+... ...+++++......+..
T Consensus 246 ah~-l~~~~~~-~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~ 323 (475)
T PRK01297 246 ADR-MLDMGFI-PQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKY 323 (475)
T ss_pred HHH-HHhcccH-HHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhHH
Confidence 994 4444433 3334444332 2579999999984 44455555444543 22221 12234444333333332
Q ss_pred HHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCC
Q 005605 264 EAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGP 343 (688)
Q Consensus 264 ~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~ 343 (688)
..+..+......+++|||++++++++.+++.|... ++.+..+||++++++|.++++.|++|
T Consensus 324 ----~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~R~~~~~~Fr~G------ 384 (475)
T PRK01297 324 ----KLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKD---------GINAAQLSGDVPQHKRIKTLEGFREG------ 384 (475)
T ss_pred ----HHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHHHHHHHHHhCC------
Confidence 23344444455678999999999999999999763 67899999999999999999999999
Q ss_pred CceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccchhhh
Q 005605 344 PGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (688)
Q Consensus 344 ~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (688)
..+||||||++++|||||+|++||++|+ |.|.++|+||+|||||. +.|.++.|+++++.
T Consensus 385 -~~~vLvaT~~l~~GIDi~~v~~VI~~~~------------------P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~ 444 (475)
T PRK01297 385 -KIRVLVATDVAGRGIHIDGISHVINFTL------------------PEDPDDYVHRIGRTGRAGASGVSISFAGEDDA 444 (475)
T ss_pred -CCcEEEEccccccCCcccCCCEEEEeCC------------------CCCHHHHHHhhCccCCCCCCceEEEEecHHHH
Confidence 8999999999999999999999999999 99999999999999999 88999999997754
No 38
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.7e-41 Score=338.03 Aligned_cols=347 Identities=17% Similarity=0.171 Sum_probs=264.0
Q ss_pred CCCccCCCCCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHh----cC---ccCCC
Q 005605 38 NNNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVL----EG---VDIET 110 (688)
Q Consensus 38 ~~~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll----~~---~~~~~ 110 (688)
.-+.++.+|.++.++..+++.++++|+..++++|-+-+|.+..|++.+.++-||||||..|.+|++ +. .++..
T Consensus 164 ~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~ 243 (610)
T KOG0341|consen 164 DIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFAR 243 (610)
T ss_pred CCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCcccc
Confidence 345667899999999999999999999999999999999999999999999999999998775543 22 11223
Q ss_pred ccccCceEEEEcCCchhhhccHHHHHHHhhcc------cccceeceeeeecccc--cccccccccCHHHHHHHHhcccc-
Q 005605 111 PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV------TIGEEVGYSIRFEDCS--SARTVLKYLTDGMLLREAMTDPL- 181 (688)
Q Consensus 111 ~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~------~~~~~vg~~~~~~~~~--~~~~~i~~lT~G~l~~~~~~~~l- 181 (688)
...+-+++|+|+++++-|...+.+.+...+.. ..+..+|.....++.. ...-.|.+.|||+|.+++....+
T Consensus 244 ~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~s 323 (610)
T KOG0341|consen 244 GEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMS 323 (610)
T ss_pred CCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhcc
Confidence 33455788999999988888887777654431 1222333322222221 23456778999999999887766
Q ss_pred ccCCcEEeecccCcChhhHHHH---HHHHHHHHhcCCCcEEEEeccccc--HHHHHchhcCCCeeeeCCcccccceeecC
Q 005605 182 LERYKVIVLDEAHERTLATDVL---FGLLKEVLKNRPDLKLVVMSATLE--AEKFQGYFYGAPLMKVPGRLHPVEIFYTQ 256 (688)
Q Consensus 182 l~~~~~lIlDEaher~~~~d~l---l~~l~~i~~~~~~~~vil~SAT~~--~~~~~~~~~~~p~~~v~g~~~~v~~~~~~ 256 (688)
|.-+.++.||||| |+++++|- ..++.-+. ..+|+++|||||+ +..|+.-..--|+..-.||.-.-....+.
T Consensus 324 Ld~CRyL~lDEAD-RmiDmGFEddir~iF~~FK---~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQ 399 (610)
T KOG0341|consen 324 LDACRYLTLDEAD-RMIDMGFEDDIRTIFSFFK---GQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQ 399 (610)
T ss_pred HHHHHHhhhhhHH-HHhhccchhhHHHHHHHHh---hhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHH
Confidence 8899999999999 78888763 22332222 2569999999996 45566555556666666664322211111
Q ss_pred CCchhHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCC
Q 005605 257 EPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPP 336 (688)
Q Consensus 257 ~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~ 336 (688)
..+.-+.++.+..++..+.+ ...++|||+..+.+++.+.++|-- .++.++.+||+..|++|..+++.|+.
T Consensus 400 evEyVkqEaKiVylLeCLQK-T~PpVLIFaEkK~DVD~IhEYLLl---------KGVEavaIHGGKDQedR~~ai~afr~ 469 (610)
T KOG0341|consen 400 EVEYVKQEAKIVYLLECLQK-TSPPVLIFAEKKADVDDIHEYLLL---------KGVEAVAIHGGKDQEDRHYAIEAFRA 469 (610)
T ss_pred HHHHHHhhhhhhhHHHHhcc-CCCceEEEeccccChHHHHHHHHH---------ccceeEEeecCcchhHHHHHHHHHhc
Confidence 11112223344445555553 456899999999999999999865 38999999999999999999999999
Q ss_pred CCCCCCCCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEc
Q 005605 337 PSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRL 415 (688)
Q Consensus 337 g~~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l 415 (688)
| +..|+||||||..|+|+|+|.||||||+ |...++|+||+|||||. +.|.+-+|
T Consensus 470 g-------kKDVLVATDVASKGLDFp~iqHVINyDM------------------P~eIENYVHRIGRTGRsg~~GiATTf 524 (610)
T KOG0341|consen 470 G-------KKDVLVATDVASKGLDFPDIQHVINYDM------------------PEEIENYVHRIGRTGRSGKTGIATTF 524 (610)
T ss_pred C-------CCceEEEecchhccCCCccchhhccCCC------------------hHHHHHHHHHhcccCCCCCcceeeee
Confidence 9 8899999999999999999999999999 99999999999999999 88999999
Q ss_pred cchhhhcc
Q 005605 416 YTEKSFNN 423 (688)
Q Consensus 416 ~t~~~~~~ 423 (688)
.++...+.
T Consensus 525 INK~~~es 532 (610)
T KOG0341|consen 525 INKNQEES 532 (610)
T ss_pred ecccchHH
Confidence 99876543
No 39
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-40 Score=334.03 Aligned_cols=344 Identities=18% Similarity=0.202 Sum_probs=268.2
Q ss_pred CCccCCCCCCC-CCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCC-----cc
Q 005605 39 NNSLINRWNGK-PYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIET-----PD 112 (688)
Q Consensus 39 ~~~~~~~f~~~-~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~-----~~ 112 (688)
-+.+..+|++- .--+.+.+.+++.|+..++|+|.+..|.+++|.+++.+++||+|||..+..+-+...+... ..
T Consensus 214 IPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~ 293 (629)
T KOG0336|consen 214 IPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRN 293 (629)
T ss_pred CCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccC
Confidence 34445667664 3446778888999999999999999999999999999999999999988865554433221 11
Q ss_pred ccCceEEEEcCCchhhhccHHHHHHHh--hcccccceeceeeeecccccc--cccccccCHHHHHHHHhcccc-ccCCcE
Q 005605 113 RRRKMMIACTQPRRVAAMSVSRRVAEE--MDVTIGEEVGYSIRFEDCSSA--RTVLKYLTDGMLLREAMTDPL-LERYKV 187 (688)
Q Consensus 113 ~~~~~~i~~t~p~~~~~~~v~~~v~~~--~~~~~~~~vg~~~~~~~~~~~--~~~i~~lT~G~l~~~~~~~~l-l~~~~~ 187 (688)
....+++.|++++++++. -.+.++ .+....+..|...|-++.... .-.|...|||++.++...... |..+.+
T Consensus 294 ~p~~lvl~ptreLalqie---~e~~kysyng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTY 370 (629)
T KOG0336|consen 294 GPGVLVLTPTRELALQIE---GEVKKYSYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITY 370 (629)
T ss_pred CCceEEEeccHHHHHHHH---hHHhHhhhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEE
Confidence 222345556565555542 222222 233444556666665554433 345667899999999988876 999999
Q ss_pred EeecccCcChhhHHHHHHHHHHHHhcCCCcEEEEeccccc--HHHHHchhcCCCeeeeCCc-----ccccceeecCCCch
Q 005605 188 IVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE--AEKFQGYFYGAPLMKVPGR-----LHPVEIFYTQEPER 260 (688)
Q Consensus 188 lIlDEaher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~--~~~~~~~~~~~p~~~v~g~-----~~~v~~~~~~~~~~ 260 (688)
||||||| +|++++|--++-+.++..+|++|+++.|||.+ +..+++-+...|++...|. .+.|++.++.....
T Consensus 371 lVlDEAD-rMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~ 449 (629)
T KOG0336|consen 371 LVLDEAD-RMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDS 449 (629)
T ss_pred EEecchh-hhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccH
Confidence 9999999 89999999999999999999999999999995 5677766667788877775 35677777665555
Q ss_pred hHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCC
Q 005605 261 DYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKE 340 (688)
Q Consensus 261 ~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~ 340 (688)
++++ .+..+..-+ .+..++|||+..+..++.+..-+.- .++..-+|||+-.|.+|+.+++.|+.|
T Consensus 450 ~k~~-~~~~f~~~m--s~ndKvIiFv~~K~~AD~LSSd~~l---------~gi~~q~lHG~r~Q~DrE~al~~~ksG--- 514 (629)
T KOG0336|consen 450 EKLE-IVQFFVANM--SSNDKVIIFVSRKVMADHLSSDFCL---------KGISSQSLHGNREQSDREMALEDFKSG--- 514 (629)
T ss_pred HHHH-HHHHHHHhc--CCCceEEEEEechhhhhhccchhhh---------cccchhhccCChhhhhHHHHHHhhhcC---
Confidence 5543 333333333 3467899999999877777665543 489999999999999999999999999
Q ss_pred CCCCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccchh
Q 005605 341 GGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEK 419 (688)
Q Consensus 341 ~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~ 419 (688)
..+|+||||+|.||||++||+||+|||| |-..++|+||+|||||+ +.|..++|++..
T Consensus 515 ----~vrILvaTDlaSRGlDv~DiTHV~NyDF------------------P~nIeeYVHRvGrtGRaGr~G~sis~lt~~ 572 (629)
T KOG0336|consen 515 ----EVRILVATDLASRGLDVPDITHVYNYDF------------------PRNIEEYVHRVGRTGRAGRTGTSISFLTRN 572 (629)
T ss_pred ----ceEEEEEechhhcCCCchhcceeeccCC------------------CccHHHHHHHhcccccCCCCcceEEEEehh
Confidence 8999999999999999999999999999 99999999999999999 899999999988
Q ss_pred hhcc
Q 005605 420 SFNN 423 (688)
Q Consensus 420 ~~~~ 423 (688)
+...
T Consensus 573 D~~~ 576 (629)
T KOG0336|consen 573 DWSM 576 (629)
T ss_pred hHHH
Confidence 7653
No 40
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.6e-39 Score=356.32 Aligned_cols=342 Identities=15% Similarity=0.223 Sum_probs=252.7
Q ss_pred CCCCCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEc
Q 005605 43 INRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACT 122 (688)
Q Consensus 43 ~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t 122 (688)
..+|+++++++.+.+.+...|+..++++|.++++.+.+|+++++.||||||||+++..+++....... ...+.++++|+
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~-~~~~~lil~Pt 105 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDL-NACQALILAPT 105 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCC-CCceEEEECCC
Confidence 46799999999999999999999999999999999999999999999999999998888776542211 12335666777
Q ss_pred CCchhhhccHHHHHHHhhcccccceeceeeeecccc--cccccccccCHHHHHHHHhcccc-ccCCcEEeecccCcChhh
Q 005605 123 QPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCS--SARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLA 199 (688)
Q Consensus 123 ~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~--~~~~~i~~lT~G~l~~~~~~~~l-l~~~~~lIlDEaher~~~ 199 (688)
+++..|.......+.......+...+|.....+... .....|.+.|+|.+.+.+..+.. +.++++||+||+|. ...
T Consensus 106 ~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~-~~~ 184 (401)
T PTZ00424 106 RELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADE-MLS 184 (401)
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHH-HHh
Confidence 776666555555555444444444444332111111 12347889999999988876654 89999999999994 333
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEecccccH--HHHHchhcCCCe-eeeCCc---ccccceeecCCCchhHHHHHHHHHHHH
Q 005605 200 TDVLFGLLKEVLKNRPDLKLVVMSATLEA--EKFQGYFYGAPL-MKVPGR---LHPVEIFYTQEPERDYLEAAIRTVVQI 273 (688)
Q Consensus 200 ~d~ll~~l~~i~~~~~~~~vil~SAT~~~--~~~~~~~~~~p~-~~v~g~---~~~v~~~~~~~~~~~~~~~~~~~l~~i 273 (688)
.++...+...+....++.+++++|||++. ..+...+...|. +.+... ...+.++|......++ ....+..+
T Consensus 185 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~ 261 (401)
T PTZ00424 185 RGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEW---KFDTLCDL 261 (401)
T ss_pred cchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHH---HHHHHHHH
Confidence 33322222223333457899999999954 334444444443 223221 2234555554443332 22334444
Q ss_pred HhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecC
Q 005605 274 HMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN 353 (688)
Q Consensus 274 ~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTn 353 (688)
......+++|||+++++.++.+++.|... ++.+..+||++++++|..+++.|+.| ..+|||||+
T Consensus 262 ~~~~~~~~~ivF~~t~~~~~~l~~~l~~~---------~~~~~~~h~~~~~~~R~~i~~~f~~g-------~~~vLvaT~ 325 (401)
T PTZ00424 262 YETLTITQAIIYCNTRRKVDYLTKKMHER---------DFTVSCMHGDMDQKDRDLIMREFRSG-------STRVLITTD 325 (401)
T ss_pred HHhcCCCeEEEEecCcHHHHHHHHHHHHC---------CCcEEEEeCCCCHHHHHHHHHHHHcC-------CCCEEEEcc
Confidence 44445678999999999999999998763 68899999999999999999999999 899999999
Q ss_pred ccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccchhhhcc
Q 005605 354 IAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFNN 423 (688)
Q Consensus 354 iae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~~~ 423 (688)
++++|||+|+|++||++|+ |.|..+|+||+|||||. +.|.||.|+++++...
T Consensus 326 ~l~~GiDip~v~~VI~~~~------------------p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~ 378 (401)
T PTZ00424 326 LLARGIDVQQVSLVINYDL------------------PASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQ 378 (401)
T ss_pred cccCCcCcccCCEEEEECC------------------CCCHHHEeecccccccCCCCceEEEEEcHHHHHH
Confidence 9999999999999999998 99999999999999999 8899999999877543
No 41
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-40 Score=348.81 Aligned_cols=346 Identities=15% Similarity=0.130 Sum_probs=268.6
Q ss_pred CCCccCCCCCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCC-------
Q 005605 38 NNNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIET------- 110 (688)
Q Consensus 38 ~~~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~------- 110 (688)
..+.....|++-.+.+.+...++..++.-++++|+-.|+.+..|.+++++|+||||||.+|..|+++..--..
T Consensus 68 ~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~ 147 (482)
T KOG0335|consen 68 DVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGES 147 (482)
T ss_pred ccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCccc
Confidence 3445566888888889999999999999999999999999999999999999999999999988875431110
Q ss_pred --ccccCceEEEEcCCchhhhccHHHHHHHhhcccccceeceeeeeccc--ccccccccccCHHHHHHHHhcccc-ccCC
Q 005605 111 --PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPL-LERY 185 (688)
Q Consensus 111 --~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~~~~~~~~l-l~~~ 185 (688)
...++.+++.||+++..|...-++.+.-.........+|...-..+. ......|.++|+|+|..++-.... |.++
T Consensus 148 ~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~ 227 (482)
T KOG0335|consen 148 GGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNC 227 (482)
T ss_pred CCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhC
Confidence 11255778899999999998888888776665554444432111111 123567889999999999887776 9999
Q ss_pred cEEeecccCcChhh-HHHHHHHHHHHHhc--C--CCcEEEEeccccc--HHHHHchhcCC-C----eeeeCCccccccee
Q 005605 186 KVIVLDEAHERTLA-TDVLFGLLKEVLKN--R--PDLKLVVMSATLE--AEKFQGYFYGA-P----LMKVPGRLHPVEIF 253 (688)
Q Consensus 186 ~~lIlDEaher~~~-~d~ll~~l~~i~~~--~--~~~~vil~SAT~~--~~~~~~~~~~~-p----~~~v~g~~~~v~~~ 253 (688)
+++|||||| +|++ ++|.-.+-+.+... . ..+|.+|||||.+ ...++.+|... - +..+.+....+.+.
T Consensus 228 k~~vLDEAD-rMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~ 306 (482)
T KOG0335|consen 228 KFLVLDEAD-RMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQK 306 (482)
T ss_pred cEEEecchH-HhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeE
Confidence 999999999 7888 66654444433321 1 2689999999995 34566555432 2 22233344566666
Q ss_pred ecCCCchhHHHHHHHHHHHHHhcCCCC-----CEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhh
Q 005605 254 YTQEPERDYLEAAIRTVVQIHMCEPSG-----DILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQ 328 (688)
Q Consensus 254 ~~~~~~~~~~~~~~~~l~~i~~~~~~g-----~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~ 328 (688)
.......++...+++.+.........+ .++||+.+++.+..++..|... ++.+.++||..++.+|.
T Consensus 307 i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~---------~~~~~sIhg~~tq~er~ 377 (482)
T KOG0335|consen 307 ILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN---------GYPAKSIHGDRTQIERE 377 (482)
T ss_pred eeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC---------CCCceeecchhhhhHHH
Confidence 666666666555555444333221244 7999999999999999999874 79999999999999999
Q ss_pred cccCCCCCCCCCCCCCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-
Q 005605 329 KIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT- 407 (688)
Q Consensus 329 ~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~- 407 (688)
++++.|+.| +..|+||||||+||||||+|+|||||++ |.+..+|+||+|||||.
T Consensus 378 ~al~~Fr~g-------~~pvlVaT~VaaRGlDi~~V~hVInyDm------------------P~d~d~YvHRIGRTGR~G 432 (482)
T KOG0335|consen 378 QALNDFRNG-------KAPVLVATNVAARGLDIPNVKHVINYDM------------------PADIDDYVHRIGRTGRVG 432 (482)
T ss_pred HHHHHhhcC-------CcceEEEehhhhcCCCCCCCceeEEeec------------------CcchhhHHHhccccccCC
Confidence 999999999 8899999999999999999999999999 99999999999999999
Q ss_pred CCceEEEccch
Q 005605 408 QPGKCFRLYTE 418 (688)
Q Consensus 408 ~~G~~~~l~t~ 418 (688)
..|.+..|++.
T Consensus 433 n~G~atsf~n~ 443 (482)
T KOG0335|consen 433 NGGRATSFFNE 443 (482)
T ss_pred CCceeEEEecc
Confidence 78999999994
No 42
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-39 Score=325.34 Aligned_cols=342 Identities=19% Similarity=0.210 Sum_probs=267.9
Q ss_pred cCCCCCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhc--CCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEE
Q 005605 42 LINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKA--NQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMI 119 (688)
Q Consensus 42 ~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~--g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i 119 (688)
+..+|++++|.|.+++.+..+++..++.+|+..+|.+.. .++++.++.+|+|||++|.+-++...+... ..++.+.+
T Consensus 88 S~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~-~~PQ~iCL 166 (477)
T KOG0332|consen 88 SAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDV-VVPQCICL 166 (477)
T ss_pred ccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccc-cCCCceee
Confidence 357899999999999999999999999999999999865 468999999999999999998888764332 22456677
Q ss_pred EEcCCchhhhccHHHHHHHhhcccccceeceeeeecccc---cccccccccCHHHHHHHHhccc--cccCCcEEeecccC
Q 005605 120 ACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCS---SARTVLKYLTDGMLLREAMTDP--LLERYKVIVLDEAH 194 (688)
Q Consensus 120 ~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~---~~~~~i~~lT~G~l~~~~~~~~--ll~~~~~lIlDEah 194 (688)
+|+++++.+.+.|.+...+.. .....|.++..... .....|.+-|||..++++..-. .+...+++|+||||
T Consensus 167 aPtrELA~Q~~eVv~eMGKf~----~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD 242 (477)
T KOG0332|consen 167 APTRELAPQTGEVVEEMGKFT----ELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEAD 242 (477)
T ss_pred CchHHHHHHHHHHHHHhcCce----eeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchh
Confidence 888888888877766555543 23445555544221 2345677889999999987733 38999999999999
Q ss_pred cChhhHHHHHHHHHHHHhcCC-CcEEEEeccccc--HHHHHchhc-CCCeeeeCC---cccccceeecCCCchhHHHHHH
Q 005605 195 ERTLATDVLFGLLKEVLKNRP-DLKLVVMSATLE--AEKFQGYFY-GAPLMKVPG---RLHPVEIFYTQEPERDYLEAAI 267 (688)
Q Consensus 195 er~~~~d~ll~~l~~i~~~~~-~~~vil~SAT~~--~~~~~~~~~-~~p~~~v~g---~~~~v~~~~~~~~~~~~~~~~~ 267 (688)
-|++++-+-+.--.+.+.-| +.|+++||||.. +..|+..+. ++.++.+.. ..++|+++|..++.++. ..
T Consensus 243 -~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~---K~ 318 (477)
T KOG0332|consen 243 -VMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDD---KY 318 (477)
T ss_pred -hhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhh---HH
Confidence 46776655444444444444 899999999994 566776554 343444432 36799999999987653 23
Q ss_pred HHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceE
Q 005605 268 RTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRK 347 (688)
Q Consensus 268 ~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~k 347 (688)
..+..++..-.-|+.+|||.|++.+.+++..+... +..|..|||+|.-++|..+.+.|+.| ..|
T Consensus 319 ~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~---------Gh~V~~l~G~l~~~~R~~ii~~Fr~g-------~~k 382 (477)
T KOG0332|consen 319 QALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAE---------GHQVSLLHGDLTVEQRAAIIDRFREG-------KEK 382 (477)
T ss_pred HHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhc---------CceeEEeeccchhHHHHHHHHHHhcC-------cce
Confidence 34444555556789999999999999999999874 89999999999999999999999999 899
Q ss_pred EEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccchhh
Q 005605 348 IVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKS 420 (688)
Q Consensus 348 vlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~ 420 (688)
|+|+|||.+||||++.|..||||++.-. |+. -.+.+.|+||+|||||. +.|.+|.|...++
T Consensus 383 VLitTnV~ARGiDv~qVs~VvNydlP~~--~~~----------~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~ 444 (477)
T KOG0332|consen 383 VLITTNVCARGIDVAQVSVVVNYDLPVK--YTG----------EPDYETYLHRIGRTGRFGKKGLAINLVDDKD 444 (477)
T ss_pred EEEEechhhcccccceEEEEEecCCccc--cCC----------CCCHHHHHHHhcccccccccceEEEeecccC
Confidence 9999999999999999999999999221 111 24788999999999999 8999999987554
No 43
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-39 Score=338.89 Aligned_cols=342 Identities=19% Similarity=0.205 Sum_probs=252.7
Q ss_pred CCCCCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcC-CEEEEEeCCCCChhcchhHHHhcCccCCC----------c
Q 005605 43 INRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKAN-QVIILVGETGSGKTTQIPQFVLEGVDIET----------P 111 (688)
Q Consensus 43 ~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g-~~vii~g~TGSGKTt~~~~~ll~~~~~~~----------~ 111 (688)
+..|.+++++..++.+|...|+..|+++|...||++..| .+++..|+||||||++|..|+++...-.. .
T Consensus 180 vsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~ 259 (731)
T KOG0347|consen 180 VSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSA 259 (731)
T ss_pred hHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHh
Confidence 456999999999999999999999999999999998888 78999999999999999999988432111 1
Q ss_pred cccC--ceEEEEcCCchhhhccHHHHHHHhhcccccceeceeeeecc--cccccccccccCHHHHHHHHhcccc----cc
Q 005605 112 DRRR--KMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFED--CSSARTVLKYLTDGMLLREAMTDPL----LE 183 (688)
Q Consensus 112 ~~~~--~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~--~~~~~~~i~~lT~G~l~~~~~~~~l----l~ 183 (688)
...+ ++++.||++++.|+.+-.+.++...+..+...+|+.....+ .......|++.|||+|..++..+.. +.
T Consensus 260 k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k 339 (731)
T KOG0347|consen 260 KYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFK 339 (731)
T ss_pred ccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhh
Confidence 1233 66778888888888888888888888888888885322222 2223567888999999998876553 78
Q ss_pred CCcEEeecccCcChhhHHHH---HHHHHHHHh--cCCCcEEEEecccccHHHHHchhc-----------CCCe---eeeC
Q 005605 184 RYKVIVLDEAHERTLATDVL---FGLLKEVLK--NRPDLKLVVMSATLEAEKFQGYFY-----------GAPL---MKVP 244 (688)
Q Consensus 184 ~~~~lIlDEaher~~~~d~l---l~~l~~i~~--~~~~~~vil~SAT~~~~~~~~~~~-----------~~p~---~~v~ 244 (688)
++++||+||+| |++.-+.+ -.+|+.+.. ..+.+|.++||||+........-. +.++ +.--
T Consensus 340 ~vkcLVlDEaD-RmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~i 418 (731)
T KOG0347|consen 340 KVKCLVLDEAD-RMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKI 418 (731)
T ss_pred hceEEEEccHH-HHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHh
Confidence 89999999999 77776553 444555442 234789999999995432221100 0000 0000
Q ss_pred Cc-ccccceeecCC-CchhHHHHHHHHHHHH-----------HhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCC
Q 005605 245 GR-LHPVEIFYTQE-PERDYLEAAIRTVVQI-----------HMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVG 311 (688)
Q Consensus 245 g~-~~~v~~~~~~~-~~~~~~~~~~~~l~~i-----------~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~ 311 (688)
|. ..| .+++. +...-...+.+.++.. ....-+|..||||++.+.|.+++-.|...
T Consensus 419 g~~~kp---kiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L--------- 486 (731)
T KOG0347|consen 419 GFRGKP---KIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNL--------- 486 (731)
T ss_pred CccCCC---eeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhc---------
Confidence 00 001 01111 1111111122222111 11234799999999999999999999764
Q ss_pred CeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeee
Q 005605 312 PVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSP 391 (688)
Q Consensus 312 ~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p 391 (688)
++..++||+.|.|.+|.+.++.|+.. ..-|+||||||+||||||+|.|||+|-. |
T Consensus 487 ~i~p~~LHA~M~QKqRLknLEkF~~~-------~~~VLiaTDVAARGLDIp~V~HVIHYqV------------------P 541 (731)
T KOG0347|consen 487 DIPPLPLHASMIQKQRLKNLEKFKQS-------PSGVLIATDVAARGLDIPGVQHVIHYQV------------------P 541 (731)
T ss_pred CCCCchhhHHHHHHHHHHhHHHHhcC-------CCeEEEeehhhhccCCCCCcceEEEeec------------------C
Confidence 78899999999999999999999987 6789999999999999999999999998 9
Q ss_pred cchhhHHhhccccCCC-CCceEEEccchhhhc
Q 005605 392 ISKASAHQRSGRAGRT-QPGKCFRLYTEKSFN 422 (688)
Q Consensus 392 ~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~~ 422 (688)
-+.+-|+||+|||.|+ ..|..+-|+.+.+..
T Consensus 542 rtseiYVHRSGRTARA~~~Gvsvml~~P~e~~ 573 (731)
T KOG0347|consen 542 RTSEIYVHRSGRTARANSEGVSVMLCGPQEVG 573 (731)
T ss_pred CccceeEecccccccccCCCeEEEEeChHHhH
Confidence 9999999999999999 889999999987753
No 44
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=4.8e-37 Score=358.05 Aligned_cols=523 Identities=15% Similarity=0.119 Sum_probs=326.6
Q ss_pred CCCCCCCChHHHHHHHHhcCCCChHHHHHHHHH-HhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcC
Q 005605 45 RWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQV-LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQ 123 (688)
Q Consensus 45 ~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~-i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~ 123 (688)
.|+++++++.+.+.++++|+..++++|.++++. +.+|+++++++|||||||..+..+++... ... ..+.+.++|++
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l-~~~--~~~~l~l~P~~ 78 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKL-LRE--GGKAVYLVPLK 78 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHH-Hhc--CCeEEEEeChH
Confidence 478889999999999999999999999999986 89999999999999999999988777653 111 12344455544
Q ss_pred CchhhhccHHHHHHH--hhcccccceeceeeeecccccccccccccCHHHHHHHHhccc-cccCCcEEeecccCcChhh-
Q 005605 124 PRRVAAMSVSRRVAE--EMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLA- 199 (688)
Q Consensus 124 p~~~~~~~v~~~v~~--~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~-ll~~~~~lIlDEaher~~~- 199 (688)
..+.+.++.+.. ..+..++...|.... ......+..|.++|++++..++.... .+.++++||+||+|. ..+
T Consensus 79 ---aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~-~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~-l~~~ 153 (720)
T PRK00254 79 ---ALAEEKYREFKDWEKLGLRVAMTTGDYDS-TDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHL-IGSY 153 (720)
T ss_pred ---HHHHHHHHHHHHHhhcCCEEEEEeCCCCC-chhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCc-cCCc
Confidence 444444444432 234444433342211 11112345688899999887765443 489999999999995 222
Q ss_pred -HHH-HHHHHHHHHhcCCCcEEEEecccc-cHHHHHchhcCCCeeeeCCcccccce--ee-----cCCCchh-HHHHHHH
Q 005605 200 -TDV-LFGLLKEVLKNRPDLKLVVMSATL-EAEKFQGYFYGAPLMKVPGRLHPVEI--FY-----TQEPERD-YLEAAIR 268 (688)
Q Consensus 200 -~d~-ll~~l~~i~~~~~~~~vil~SAT~-~~~~~~~~~~~~p~~~v~g~~~~v~~--~~-----~~~~~~~-~~~~~~~ 268 (688)
.+. +..++.. ..++.|+|++|||+ +.+.+++|++. +.+....+..+... ++ ....... +......
T Consensus 154 ~rg~~le~il~~---l~~~~qiI~lSATl~n~~~la~wl~~-~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (720)
T PRK00254 154 DRGATLEMILTH---MLGRAQILGLSATVGNAEELAEWLNA-ELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWES 229 (720)
T ss_pred cchHHHHHHHHh---cCcCCcEEEEEccCCCHHHHHHHhCC-ccccCCCCCCcceeeEecCCeeeccCcchhcchHHHHH
Confidence 122 2222222 23468999999999 78888888753 33322223222211 11 1111111 1122223
Q ss_pred HHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcC----------------CC--------CCCeEEEEecCCCCH
Q 005605 269 TVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMG----------------DQ--------VGPVKVVPLYSTLPP 324 (688)
Q Consensus 269 ~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~----------------~~--------~~~~~v~~lh~~l~~ 324 (688)
.+.+... ..+++|||+++++.++.++..|...+.... .. .-...+..+||+|++
T Consensus 230 ~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~ 307 (720)
T PRK00254 230 LVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGR 307 (720)
T ss_pred HHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCH
Confidence 3333332 357899999999999998877754321100 00 002348899999999
Q ss_pred HHhhcccCCCCCCCCCCCCCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhcccc
Q 005605 325 AMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRA 404 (688)
Q Consensus 325 ~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRa 404 (688)
++|..+++.|++| ..+|||||+.+++|+|+|++++||... ..|+ ..+. .+.+..+|.||+|||
T Consensus 308 ~eR~~ve~~F~~G-------~i~VLvaT~tLa~Gvnipa~~vVI~~~----~~~~-~~~~-----~~~~~~~~~Qm~GRA 370 (720)
T PRK00254 308 TERVLIEDAFREG-------LIKVITATPTLSAGINLPAFRVIIRDT----KRYS-NFGW-----EDIPVLEIQQMMGRA 370 (720)
T ss_pred HHHHHHHHHHHCC-------CCeEEEeCcHHhhhcCCCceEEEECCc----eEcC-CCCc-----eeCCHHHHHHhhhcc
Confidence 9999999999999 899999999999999999999999533 2343 1121 156678999999999
Q ss_pred CCC---CCceEEEccchhh----hcccCCCCCCCcccc------cCcHHHHHHHHHcC-CCCCc--------cccCCCCC
Q 005605 405 GRT---QPGKCFRLYTEKS----FNNDLQPQTYPEILR------SNLANTVLTLKKLG-IDDLV--------HFDFMDPP 462 (688)
Q Consensus 405 GR~---~~G~~~~l~t~~~----~~~~l~~~~~pei~r------~~l~~~~L~l~~~~-~~~~~--------~f~~~~~P 462 (688)
||. ..|.||.+.+.++ ++. +-. ..||-.. ..|...++.....+ +.+.. .|.+...|
T Consensus 371 GR~~~d~~G~~ii~~~~~~~~~~~~~-~~~-~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~~~~ 448 (720)
T PRK00254 371 GRPKYDEVGEAIIVATTEEPSKLMER-YIF-GKPEKLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAHQRK 448 (720)
T ss_pred CCCCcCCCceEEEEecCcchHHHHHH-HHh-CCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHHhhc
Confidence 996 4699999986533 222 111 1122111 12333444444443 22211 12222334
Q ss_pred c----HHHHHHHHHHHHHcCCccCC--C--CcChhhhhcccCCCChhhhhhhhhcCC----CCChHHHHHHHHHhcCCC-
Q 005605 463 A----PETLMRALEVLNYLGALDDD--G--NLTEMGEKMSEFPLDPQMSKMLVESPK----YNCSNEILSISAMLSVPN- 529 (688)
Q Consensus 463 ~----~~~i~~a~~~L~~lgald~~--~--~lT~lG~~~~~lpl~p~~~k~ll~~~~----~~c~~~~l~i~a~ls~~~- 529 (688)
+ .+.++.++..|.+.|+|+.+ + ..|++|+.++.++++|..++++..+.. ......++.+++....-.
T Consensus 449 ~~~~~~~~v~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~s~~~i~~~t~~~~~~~l~~~~~~~~~~~~l~~~~~~~e~~~ 528 (720)
T PRK00254 449 DLYSLEEKAKEIVYFLLENEFIDIDLEDRFIPLPLGIRTSQLYIDPLTAKKFKDAFPKIEKNPNPLGIFQLIASTPDMTP 528 (720)
T ss_pred ChHhHHHHHHHHHHHHHHCCCeEEcCCCCEeeChHHHHHHHHhCCHHHHHHHHHHHHhhccCCCHHHHHHHhhCCccccc
Confidence 4 34677889999999999643 2 579999999999999999999876643 123445566555433322
Q ss_pred CCCCChHHHHHHH----HHHHHhCC--C--C-CcHHH------HHHHHHHHHhcCCChhhHHhhcCCHHHHHHHHHHHHH
Q 005605 530 CFVRPREAQKAAD----EAKARFGH--I--D-GDHLT------LLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQ 594 (688)
Q Consensus 530 ~f~~~~~~~~~~~----~~~~~~~~--~--~-sD~~~------~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~i~~q 594 (688)
+..+. ++..... .....+.. + . .|+-. ..-+.++|.+.......+.++++..+.++.+.+...+
T Consensus 529 ~~~r~-~e~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~ 607 (720)
T PRK00254 529 LNYSR-KEMEDLLDEAYEMEDRLYFNIPYWEDYKFQKFLRAFKTAKVLLDWINEVPEGEIVETYNIDPGDLYRILELADW 607 (720)
T ss_pred cCcch-hhHHHHHHHHHhhcccccccCCcchhhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHHHHHH
Confidence 22222 1111111 11001110 1 0 12222 2345578877655566778889999999988888888
Q ss_pred HHHHHHH
Q 005605 595 LVRIMAR 601 (688)
Q Consensus 595 L~~~l~~ 601 (688)
|...+.+
T Consensus 608 l~~a~~~ 614 (720)
T PRK00254 608 LMYSLIE 614 (720)
T ss_pred HHHHHHH
Confidence 8776644
No 45
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=2.7e-37 Score=357.48 Aligned_cols=337 Identities=19% Similarity=0.210 Sum_probs=238.1
Q ss_pred CCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhh
Q 005605 50 PYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAA 129 (688)
Q Consensus 50 ~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~ 129 (688)
.+++.+.+.++++|+..+|++|.+.++.+.+|+++++++|||||||.++..++++... .. ...+.++++||+++..+.
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~-~~-~~~~aL~l~PtraLa~q~ 97 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALA-DD-PRATALYLAPTKALAADQ 97 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHh-hC-CCcEEEEEcChHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999887652 21 123456667776666655
Q ss_pred ccHHHHHHHhhcccccceeceeeeecc-cccccccccccCHHHHHHHHhc-----cccccCCcEEeecccCcChhh----
Q 005605 130 MSVSRRVAEEMDVTIGEEVGYSIRFED-CSSARTVLKYLTDGMLLREAMT-----DPLLERYKVIVLDEAHERTLA---- 199 (688)
Q Consensus 130 ~~v~~~v~~~~~~~~~~~vg~~~~~~~-~~~~~~~i~~lT~G~l~~~~~~-----~~ll~~~~~lIlDEaher~~~---- 199 (688)
....+.+. ..+..+....|.....+. ....+..|.+.||+++...++. ..+++++++||+||||. +..
T Consensus 98 ~~~l~~l~-~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~-~~g~fg~ 175 (742)
T TIGR03817 98 LRAVRELT-LRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHS-YRGVFGS 175 (742)
T ss_pred HHHHHHhc-cCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhh-ccCccHH
Confidence 55555443 122333333332211111 1112356788899998754432 23589999999999995 222
Q ss_pred -HHHHHHHHHHHHhcC-CCcEEEEecccc-cHHHHHchhcCCCeeeeCCc--ccc-cceeecCCC------------chh
Q 005605 200 -TDVLFGLLKEVLKNR-PDLKLVVMSATL-EAEKFQGYFYGAPLMKVPGR--LHP-VEIFYTQEP------------ERD 261 (688)
Q Consensus 200 -~d~ll~~l~~i~~~~-~~~~vil~SAT~-~~~~~~~~~~~~p~~~v~g~--~~~-v~~~~~~~~------------~~~ 261 (688)
...++..++.+.... .+.|++++|||+ +...+++.+.+.|+..+... ... ....+...+ ...
T Consensus 176 ~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~ 255 (742)
T TIGR03817 176 HVALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENGAPVRRS 255 (742)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCceEEEEecCCccccccccccccccc
Confidence 122333444444332 367999999999 55666766666676555332 111 122221111 011
Q ss_pred HHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCC
Q 005605 262 YLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEG 341 (688)
Q Consensus 262 ~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~ 341 (688)
........+..+.. ...++|||++|++.++.+++.|.+.+..... ..+..+..+||++++++|.++++.|++|
T Consensus 256 ~~~~~~~~l~~l~~--~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~-~l~~~v~~~hgg~~~~eR~~ie~~f~~G---- 328 (742)
T TIGR03817 256 ASAEAADLLADLVA--EGARTLTFVRSRRGAELVAAIARRLLGEVDP-DLAERVAAYRAGYLPEDRRELERALRDG---- 328 (742)
T ss_pred hHHHHHHHHHHHHH--CCCCEEEEcCCHHHHHHHHHHHHHHHHhhcc-ccccchhheecCCCHHHHHHHHHHHHcC----
Confidence 11223334444443 3578999999999999999998875422111 1145788999999999999999999999
Q ss_pred CCCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccch
Q 005605 342 GPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTE 418 (688)
Q Consensus 342 ~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~ 418 (688)
+.++|||||++|+|||||+|++||++|+ |.|.++|+||+|||||. +.|.++.+.++
T Consensus 329 ---~i~vLVaTd~lerGIDI~~vd~VI~~~~------------------P~s~~~y~qRiGRaGR~G~~g~ai~v~~~ 385 (742)
T TIGR03817 329 ---ELLGVATTNALELGVDISGLDAVVIAGF------------------PGTRASLWQQAGRAGRRGQGALVVLVARD 385 (742)
T ss_pred ---CceEEEECchHhccCCcccccEEEEeCC------------------CCCHHHHHHhccccCCCCCCcEEEEEeCC
Confidence 8999999999999999999999999999 99999999999999999 88999998863
No 46
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-37 Score=316.96 Aligned_cols=342 Identities=17% Similarity=0.161 Sum_probs=268.9
Q ss_pred ccCCCCCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCcc----C-CCccccC
Q 005605 41 SLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVD----I-ETPDRRR 115 (688)
Q Consensus 41 ~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~----~-~~~~~~~ 115 (688)
.+..+|++++|++++.+++.+.|+..++.+|+..||.+.+|++++..|.||||||.++..|+++..- . .......
T Consensus 16 ~~~ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~s 95 (569)
T KOG0346|consen 16 SKEKTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPS 95 (569)
T ss_pred hhhccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccce
Confidence 3346899999999999999999999999999999999999999999999999999999988876541 1 1223455
Q ss_pred ceEEEEcCCchhhhccHHHHHHHhhcccc-----cceeceeeeecccccccccccccCHHHHHHHHhcccc--ccCCcEE
Q 005605 116 KMMIACTQPRRVAAMSVSRRVAEEMDVTI-----GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPL--LERYKVI 188 (688)
Q Consensus 116 ~~~i~~t~p~~~~~~~v~~~v~~~~~~~~-----~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~l--l~~~~~l 188 (688)
+++++||.++..|+.++.+.+.......+ .....-++.. ........|.+.|||.+++++.++.+ +..++++
T Consensus 96 a~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~-~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~L 174 (569)
T KOG0346|consen 96 AVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNS-VALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFL 174 (569)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHH-HHHccCCCeEEeChHHHHHHHhhccchhhhheeeE
Confidence 78899999999999999888876554221 1111111000 11123467788999999999999884 8899999
Q ss_pred eecccCcChhhHHHHHHHHHHHHhc-CCCcEEEEecccc--cHHHHHchhcCCCeeee-CCc----ccccceeecCCCch
Q 005605 189 VLDEAHERTLATDVLFGLLKEVLKN-RPDLKLVVMSATL--EAEKFQGYFYGAPLMKV-PGR----LHPVEIFYTQEPER 260 (688)
Q Consensus 189 IlDEaher~~~~d~ll~~l~~i~~~-~~~~~vil~SAT~--~~~~~~~~~~~~p~~~v-~g~----~~~v~~~~~~~~~~ 260 (688)
|+||||+ +..--..+-++.+... .+..|.+|||||+ |+..+...|...|++.- ... ...+.+++..+...
T Consensus 175 VvDEADL--llsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~ 252 (569)
T KOG0346|consen 175 VVDEADL--LLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEE 252 (569)
T ss_pred Eechhhh--hhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccc
Confidence 9999985 3332334444555443 4478999999999 57788899988887632 211 23577888888877
Q ss_pred hHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCC
Q 005605 261 DYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKE 340 (688)
Q Consensus 261 ~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~ 340 (688)
|++-.+.. ++++. --.|++|+|+++.+.+-.+.-.|.+. ++..+.|.|.||..-|..+++.|-.|
T Consensus 253 DKflllya-llKL~--LI~gKsliFVNtIdr~YrLkLfLeqF---------GiksciLNseLP~NSR~Hii~QFNkG--- 317 (569)
T KOG0346|consen 253 DKFLLLYA-LLKLR--LIRGKSLIFVNTIDRCYRLKLFLEQF---------GIKSCILNSELPANSRCHIIEQFNKG--- 317 (569)
T ss_pred hhHHHHHH-HHHHH--HhcCceEEEEechhhhHHHHHHHHHh---------CcHhhhhcccccccchhhHHHHhhCc---
Confidence 76543322 22221 23689999999999999988888774 78999999999999999999999999
Q ss_pred CCCCceEEEEecCc-----------------------------------cccCcccCCeEEEEcCCcccceeecCCCCcc
Q 005605 341 GGPPGRKIVVSTNI-----------------------------------AETSLTIDGIVYVIDPGFAKQKVYNPRVRVE 385 (688)
Q Consensus 341 ~~~~~~kvlvaTni-----------------------------------ae~gi~i~~V~~VId~g~~k~~~~~~~~~~~ 385 (688)
...||||||. ++||||+..|..|||+||
T Consensus 318 ----~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~------------- 380 (569)
T KOG0346|consen 318 ----LYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDF------------- 380 (569)
T ss_pred ----ceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCC-------------
Confidence 8999999992 468999999999999999
Q ss_pred cceeeecchhhHHhhccccCCC-CCceEEEccchhhhc
Q 005605 386 SLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFN 422 (688)
Q Consensus 386 ~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~~ 422 (688)
|.+..+|+||+|||||. .+|.+.+|+...+..
T Consensus 381 -----P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~ 413 (569)
T KOG0346|consen 381 -----PETVTSYIHRVGRTARGNNKGTALSFVSPKEEF 413 (569)
T ss_pred -----CCchHHHHHhccccccCCCCCceEEEecchHHh
Confidence 99999999999999999 999999999887653
No 47
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-36 Score=305.49 Aligned_cols=343 Identities=16% Similarity=0.270 Sum_probs=281.0
Q ss_pred CCCccCCCCCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCce
Q 005605 38 NNNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKM 117 (688)
Q Consensus 38 ~~~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~ 117 (688)
+-+.-.++|++++|++.++..+..-|+-.|+.+|+..|..+-+|.++.+.+++|+|||.++..++++..+... ...+.+
T Consensus 20 n~~evvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~-ke~qal 98 (397)
T KOG0327|consen 20 NWNEVVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSV-KETQAL 98 (397)
T ss_pred cHHHHhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcch-HHHHHH
Confidence 3333457899999999999999999999999999999999999999999999999999999999998875543 224577
Q ss_pred EEEEcCCchhhhccHHHHHHHhhcccccceeceeeeeccc---ccccccccccCHHHHHHHHhcccc-ccCCcEEeeccc
Q 005605 118 MIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC---SSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEA 193 (688)
Q Consensus 118 ~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~---~~~~~~i~~lT~G~l~~~~~~~~l-l~~~~~lIlDEa 193 (688)
+++|++++..|+..+...+....+..+...+|......+. ......|.+-|||+....+.+..+ ...++++|+|||
T Consensus 99 ilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEa 178 (397)
T KOG0327|consen 99 ILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEA 178 (397)
T ss_pred HhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecch
Confidence 8899999999888888888888888877777765443222 122356778899999999988877 666999999999
Q ss_pred CcChhhHHHHHHHHHHHHh-cCCCcEEEEecccccH--HHHHchhcCCCeeeeCCc----ccccceeecCCCchhHHHHH
Q 005605 194 HERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLEA--EKFQGYFYGAPLMKVPGR----LHPVEIFYTQEPERDYLEAA 266 (688)
Q Consensus 194 her~~~~d~ll~~l~~i~~-~~~~~~vil~SAT~~~--~~~~~~~~~~p~~~v~g~----~~~v~~~~~~~~~~~~~~~~ 266 (688)
|| ++..++ .+.+..+.+ ..++.|++++|||++. ...++.|...|+.....+ ...++++|....... .
T Consensus 179 DE-mLs~gf-kdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~----k 252 (397)
T KOG0327|consen 179 DE-MLSRGF-KDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE----K 252 (397)
T ss_pred Hh-hhccch-HHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc----c
Confidence 97 455544 334444433 3558899999999954 567788888887654332 345677777665544 4
Q ss_pred HHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCce
Q 005605 267 IRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGR 346 (688)
Q Consensus 267 ~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~ 346 (688)
+.++..++. .-.+.+||++|++.+..+...|... ++.+..+||.|.+.+|..++..|+.| ..
T Consensus 253 ~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~---------~~~~s~~~~d~~q~~R~~~~~ef~~g-------ss 314 (397)
T KOG0327|consen 253 LDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAH---------GFTVSAIHGDMEQNERDTLMREFRSG-------SS 314 (397)
T ss_pred ccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhC---------CceEEEeecccchhhhhHHHHHhhcC-------Cc
Confidence 556666665 4567899999999999999999653 89999999999999999999999999 89
Q ss_pred EEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccchhhhcc
Q 005605 347 KIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFNN 423 (688)
Q Consensus 347 kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~~~ 423 (688)
+|+|+|++++||+||.++..||||++ |..+++|+||+||+||. ++|.++.++++.+...
T Consensus 315 rvlIttdl~argidv~~~slvinydl------------------P~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~ 374 (397)
T KOG0327|consen 315 RVLITTDLLARGIDVQQVSLVVNYDL------------------PARKENYIHRIGRAGRFGRKGVAINFVTEEDVRD 374 (397)
T ss_pred eEEeeccccccccchhhcceeeeecc------------------ccchhhhhhhcccccccCCCceeeeeehHhhHHH
Confidence 99999999999999999999999999 99999999999999999 9999999999877654
No 48
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-36 Score=338.00 Aligned_cols=347 Identities=18% Similarity=0.217 Sum_probs=280.2
Q ss_pred cCCCccCCCCCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCC----cc
Q 005605 37 NNNNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIET----PD 112 (688)
Q Consensus 37 ~~~~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~----~~ 112 (688)
..-+.++.+|...+++..++..+++.|+-+++++|.+.||+|..|++|+.+|.||||||..|.+|++-...... ..
T Consensus 358 ~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gd 437 (997)
T KOG0334|consen 358 KECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGD 437 (997)
T ss_pred CCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCC
Confidence 34456678999999999999999999999999999999999999999999999999999999888874432221 22
Q ss_pred ccCceEEEEcCCchhhhccHHHHHHHhhcccccceeceeeeeccccc--ccccccccCHHHHHHHHhcccc----ccCCc
Q 005605 113 RRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSS--ARTVLKYLTDGMLLREAMTDPL----LERYK 186 (688)
Q Consensus 113 ~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~--~~~~i~~lT~G~l~~~~~~~~l----l~~~~ 186 (688)
++-+++++||+++..|+......+++..+..+...+|..-.-++... ..+.|.+||+|+.++++....- +..+.
T Consensus 438 GPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t 517 (997)
T KOG0334|consen 438 GPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVT 517 (997)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccc
Confidence 34467788999999998888888888888887777776543333322 2477889999999998866542 66777
Q ss_pred EEeecccCcChhhHHHHHHHHHHHHhcCCCcEEEEeccccc--HHHHHchhcCCCeeee-CCc---ccccceeecCCC-c
Q 005605 187 VIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE--AEKFQGYFYGAPLMKV-PGR---LHPVEIFYTQEP-E 259 (688)
Q Consensus 187 ~lIlDEaher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~--~~~~~~~~~~~p~~~v-~g~---~~~v~~~~~~~~-~ 259 (688)
++|+|||| |+.++.+.-.+...+...+|++|++++|||++ .+.++......|+-.+ .|+ ...|++.+..++ .
T Consensus 518 ~lv~deaD-rmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e 596 (997)
T KOG0334|consen 518 YLVLDEAD-RMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIE 596 (997)
T ss_pred eeeechhh-hhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCc
Confidence 99999999 78888875555554445588999999999995 4667766555776543 343 235666666666 5
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCC
Q 005605 260 RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSK 339 (688)
Q Consensus 260 ~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~ 339 (688)
..++..+..+|-.. ...+++|||+..++.++.|.+.|.+. ++.+..|||+.++.+|..+++.|+++
T Consensus 597 ~eKf~kL~eLl~e~---~e~~~tiiFv~~qe~~d~l~~~L~~a---------g~~~~slHGgv~q~dR~sti~dfK~~-- 662 (997)
T KOG0334|consen 597 NEKFLKLLELLGER---YEDGKTIIFVDKQEKADALLRDLQKA---------GYNCDSLHGGVDQHDRSSTIEDFKNG-- 662 (997)
T ss_pred hHHHHHHHHHHHHH---hhcCCEEEEEcCchHHHHHHHHHHhc---------CcchhhhcCCCchHHHHhHHHHHhcc--
Confidence 55555444444333 33789999999999999999999863 78888999999999999999999999
Q ss_pred CCCCCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccch
Q 005605 340 EGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTE 418 (688)
Q Consensus 340 ~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~ 418 (688)
..+++|||++++||+|+.++..||||++ |.-.+.|+||+|||||+ +.|.||+|.++
T Consensus 663 -----~~~LLvaTsvvarGLdv~~l~Lvvnyd~------------------pnh~edyvhR~gRTgragrkg~AvtFi~p 719 (997)
T KOG0334|consen 663 -----VVNLLVATSVVARGLDVKELILVVNYDF------------------PNHYEDYVHRVGRTGRAGRKGAAVTFITP 719 (997)
T ss_pred -----CceEEEehhhhhcccccccceEEEEccc------------------chhHHHHHHHhcccccCCccceeEEEeCh
Confidence 8999999999999999999999999999 99999999999999999 88999999998
Q ss_pred hhh
Q 005605 419 KSF 421 (688)
Q Consensus 419 ~~~ 421 (688)
++.
T Consensus 720 ~q~ 722 (997)
T KOG0334|consen 720 DQL 722 (997)
T ss_pred HHh
Confidence 443
No 49
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-35 Score=305.05 Aligned_cols=349 Identities=19% Similarity=0.207 Sum_probs=253.7
Q ss_pred CCccCCCCCCCCCChHHH----------HHHHHhcCCCChHHHHHHHHHHh---------cCCEEEEEeCCCCChhcchh
Q 005605 39 NNSLINRWNGKPYSQRYY----------EILEKRKSLPVWQQKEEFLQVLK---------ANQVIILVGETGSGKTTQIP 99 (688)
Q Consensus 39 ~~~~~~~f~~~~l~~~~~----------~~l~~~~~lp~~~~q~~ii~~i~---------~g~~vii~g~TGSGKTt~~~ 99 (688)
++.+...|+.++.++... +++.++++...+++|..+++.+. .+++++|.+|||||||.+|.
T Consensus 122 ~~nslq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~ 201 (620)
T KOG0350|consen 122 QNNSLQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYV 201 (620)
T ss_pred CCCceeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeeh
Confidence 344456788888886543 44888999999999999999883 26689999999999999999
Q ss_pred HHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhcccccceeceee-eeccc--cc--c--cccccccCHHHH
Q 005605 100 QFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSI-RFEDC--SS--A--RTVLKYLTDGML 172 (688)
Q Consensus 100 ~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~-~~~~~--~~--~--~~~i~~lT~G~l 172 (688)
.|+++-..-......+.++|+|++.+..|+..+.++++.+.+..++...|-.. ..+.. .. . ...|.+.|||+|
T Consensus 202 iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRL 281 (620)
T KOG0350|consen 202 IPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRL 281 (620)
T ss_pred hHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHH
Confidence 99887652222233567889999999999999999998888777666555321 11111 11 1 235678899999
Q ss_pred HHHHhcccc--ccCCcEEeecccCcChhhHHH------HHHHHHH---------HHh-------------------cCCC
Q 005605 173 LREAMTDPL--LERYKVIVLDEAHERTLATDV------LFGLLKE---------VLK-------------------NRPD 216 (688)
Q Consensus 173 ~~~~~~~~l--l~~~~~lIlDEaher~~~~d~------ll~~l~~---------i~~-------------------~~~~ 216 (688)
.+++.+..- |.+.+++|+|||| |+++..+ ++..++. +.+ ..+.
T Consensus 282 VDHl~~~k~f~Lk~LrfLVIDEAD-Rll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~ 360 (620)
T KOG0350|consen 282 VDHLNNTKSFDLKHLRFLVIDEAD-RLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPP 360 (620)
T ss_pred HHhccCCCCcchhhceEEEechHH-HHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCch
Confidence 999986553 9999999999999 6666543 2222111 111 1233
Q ss_pred cEEEEecccc--cHHHHHchhcCCC-eeeeCCc---ccc----cceeecCCCchhHHHHHHHHHHHHHhcCCCCCEEEec
Q 005605 217 LKLVVMSATL--EAEKFQGYFYGAP-LMKVPGR---LHP----VEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFL 286 (688)
Q Consensus 217 ~~vil~SAT~--~~~~~~~~~~~~p-~~~v~g~---~~~----v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl 286 (688)
+.-+++|||+ ++.++.++=.+.| ++.+.+. .|. ..+.+......-+ -..++.......-.++|+|+
T Consensus 361 l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~k----pl~~~~lI~~~k~~r~lcf~ 436 (620)
T KOG0350|consen 361 LWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFK----PLAVYALITSNKLNRTLCFV 436 (620)
T ss_pred hHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccc----hHhHHHHHHHhhcceEEEEe
Confidence 4567889998 6777777755555 4444421 111 1222222211111 11233333334556899999
Q ss_pred CcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCcccCCeEE
Q 005605 287 TGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVY 366 (688)
Q Consensus 287 ~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~ 366 (688)
++.+.+.+++..|.-.+. ..++++-.+.|+++.+.|.+.++.|..| ...|+||||+.+||||+.||+.
T Consensus 437 ~S~~sa~Rl~~~L~v~~~-----~~~~~~s~~t~~l~~k~r~k~l~~f~~g-------~i~vLIcSD~laRGiDv~~v~~ 504 (620)
T KOG0350|consen 437 NSVSSANRLAHVLKVEFC-----SDNFKVSEFTGQLNGKRRYKMLEKFAKG-------DINVLICSDALARGIDVNDVDN 504 (620)
T ss_pred cchHHHHHHHHHHHHHhc-----cccchhhhhhhhhhHHHHHHHHHHHhcC-------CceEEEehhhhhcCCcccccce
Confidence 999999999999873321 2357777799999999999999999999 8999999999999999999999
Q ss_pred EEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccchhhhc
Q 005605 367 VIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFN 422 (688)
Q Consensus 367 VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~~ 422 (688)
||||+. |.+..+|+||+|||||+ +.|.||+|.+..+..
T Consensus 505 VINYd~------------------P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r 543 (620)
T KOG0350|consen 505 VINYDP------------------PASDKTYVHRAGRTARAGQDGYAITLLDKHEKR 543 (620)
T ss_pred EeecCC------------------CchhhHHHHhhcccccccCCceEEEeeccccch
Confidence 999888 99999999999999999 899999999986654
No 50
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=7e-34 Score=316.23 Aligned_cols=314 Identities=16% Similarity=0.157 Sum_probs=214.8
Q ss_pred HhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhh
Q 005605 61 KRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (688)
Q Consensus 61 ~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (688)
..|+..++++|.++++.+.+|+++++++|||||||+++..+.+... ...++++|+.++.. +..+.+.. .
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~~-------~~~lVi~P~~~L~~---dq~~~l~~-~ 74 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCSD-------GITLVISPLISLME---DQVLQLKA-S 74 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHcC-------CcEEEEecHHHHHH---HHHHHHHH-c
Confidence 4588889999999999999999999999999999998877766432 22455666555433 33344432 2
Q ss_pred cccccceeceeeee------cccccccccccccCHHHHHHHH--hccc-cccCCcEEeecccCcChhhH-HH--HHHHHH
Q 005605 141 DVTIGEEVGYSIRF------EDCSSARTVLKYLTDGMLLREA--MTDP-LLERYKVIVLDEAHERTLAT-DV--LFGLLK 208 (688)
Q Consensus 141 ~~~~~~~vg~~~~~------~~~~~~~~~i~~lT~G~l~~~~--~~~~-ll~~~~~lIlDEaher~~~~-d~--ll~~l~ 208 (688)
+.......|..... .........+.++||+.+.... ...- ...++++||+||||.-..+. ++ .+..+.
T Consensus 75 gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~ 154 (470)
T TIGR00614 75 GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALG 154 (470)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHH
Confidence 33322111111000 0011223567788999875322 1111 36789999999999633221 11 222334
Q ss_pred HHHhcCCCcEEEEecccccHHH---HHchhc-CCCeeeeCCcccccceeecCCCch-hHHHHHHHHHHHHHhcCCCCCEE
Q 005605 209 EVLKNRPDLKLVVMSATLEAEK---FQGYFY-GAPLMKVPGRLHPVEIFYTQEPER-DYLEAAIRTVVQIHMCEPSGDIL 283 (688)
Q Consensus 209 ~i~~~~~~~~vil~SAT~~~~~---~~~~~~-~~p~~~v~g~~~~v~~~~~~~~~~-~~~~~~~~~l~~i~~~~~~g~iL 283 (688)
.+....|+.+++++|||++... +.+.+. ..|.+...+...|- .+|...+.. +....+...+.. ..+...+|
T Consensus 155 ~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~n-l~~~v~~~~~~~~~~l~~~l~~---~~~~~~~I 230 (470)
T TIGR00614 155 SLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPN-LYYEVRRKTPKILEDLLRFIRK---EFKGKSGI 230 (470)
T ss_pred HHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCC-cEEEEEeCCccHHHHHHHHHHH---hcCCCceE
Confidence 4455567889999999996543 333332 34444333322221 222222211 233333322221 22344569
Q ss_pred EecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCcccCC
Q 005605 284 VFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDG 363 (688)
Q Consensus 284 VFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~ 363 (688)
||++++++++.+++.|... ++.+..+||+|++++|..+++.|..| ..+|||||+++++|||+|+
T Consensus 231 IF~~s~~~~e~la~~L~~~---------g~~~~~~H~~l~~~eR~~i~~~F~~g-------~~~vLVaT~~~~~GID~p~ 294 (470)
T TIGR00614 231 IYCPSRKKSEQVTASLQNL---------GIAAGAYHAGLEISARDDVHHKFQRD-------EIQVVVATVAFGMGINKPD 294 (470)
T ss_pred EEECcHHHHHHHHHHHHhc---------CCCeeEeeCCCCHHHHHHHHHHHHcC-------CCcEEEEechhhccCCccc
Confidence 9999999999999999864 78899999999999999999999999 8999999999999999999
Q ss_pred eEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccchhhhcc
Q 005605 364 IVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFNN 423 (688)
Q Consensus 364 V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~~~ 423 (688)
|++||++|+ |.|.++|+||+|||||. .+|.|+.+|+..+...
T Consensus 295 V~~VI~~~~------------------P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~ 337 (470)
T TIGR00614 295 VRFVIHYSL------------------PKSMESYYQESGRAGRDGLPSECHLFYAPADINR 337 (470)
T ss_pred ceEEEEeCC------------------CCCHHHHHhhhcCcCCCCCCceEEEEechhHHHH
Confidence 999999999 99999999999999999 8999999999887643
No 51
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=8.6e-34 Score=326.01 Aligned_cols=325 Identities=15% Similarity=0.154 Sum_probs=220.3
Q ss_pred CCCChHHHHHHHH-hcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchh
Q 005605 49 KPYSQRYYEILEK-RKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRV 127 (688)
Q Consensus 49 ~~l~~~~~~~l~~-~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~ 127 (688)
++.+..+...++. -|+....+.|.++|+++..|+++++++|||+|||..|.+|++... ...++|.|+..+.
T Consensus 442 fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~~-------GiTLVISPLiSLm- 513 (1195)
T PLN03137 442 FPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALICP-------GITLVISPLVSLI- 513 (1195)
T ss_pred CCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHcC-------CcEEEEeCHHHHH-
Confidence 4444555555543 478899999999999999999999999999999999988887532 1245555554443
Q ss_pred hhccHHHHHHHhhcccccceeceeeeecc------cc--cccccccccCHHHHHH--HHhc---c-ccccCCcEEeeccc
Q 005605 128 AAMSVSRRVAEEMDVTIGEEVGYSIRFED------CS--SARTVLKYLTDGMLLR--EAMT---D-PLLERYKVIVLDEA 193 (688)
Q Consensus 128 ~~~~v~~~v~~~~~~~~~~~vg~~~~~~~------~~--~~~~~i~~lT~G~l~~--~~~~---~-~ll~~~~~lIlDEa 193 (688)
......+.. .++......|.....+. .. .....+.++||+++.. .++. . .....+++||||||
T Consensus 514 --qDQV~~L~~-~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEA 590 (1195)
T PLN03137 514 --QDQIMNLLQ-ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEA 590 (1195)
T ss_pred --HHHHHHHHh-CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcc
Confidence 222222222 23322222221111110 01 1245688999999752 1111 1 11345889999999
Q ss_pred CcChhhH-HHH--HHHHHHHHhcCCCcEEEEecccccHH---HHHchhcC-CCeeeeCCcccccceeecCCCchhHHHHH
Q 005605 194 HERTLAT-DVL--FGLLKEVLKNRPDLKLVVMSATLEAE---KFQGYFYG-APLMKVPGRLHPVEIFYTQEPERDYLEAA 266 (688)
Q Consensus 194 her~~~~-d~l--l~~l~~i~~~~~~~~vil~SAT~~~~---~~~~~~~~-~p~~~v~g~~~~v~~~~~~~~~~~~~~~~ 266 (688)
|.-+.+. ||- ...+..+....|+.+++++|||+... .+.+.+.. .+++...+...| ..+|...+.... .
T Consensus 591 HcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~Rp-NL~y~Vv~k~kk---~ 666 (1195)
T PLN03137 591 HCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRP-NLWYSVVPKTKK---C 666 (1195)
T ss_pred hhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCcc-ceEEEEeccchh---H
Confidence 9633322 231 22233444556788999999999643 34444432 333333332222 344443333222 1
Q ss_pred HHHHHHHHh-cCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCc
Q 005605 267 IRTVVQIHM-CEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPG 345 (688)
Q Consensus 267 ~~~l~~i~~-~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~ 345 (688)
...+..... ....+..||||.++.+++.+++.|... ++.+.++||+|++++|..+++.|..| .
T Consensus 667 le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~---------Gika~~YHAGLs~eeR~~vqe~F~~G-------e 730 (1195)
T PLN03137 667 LEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEF---------GHKAAFYHGSMDPAQRAFVQKQWSKD-------E 730 (1195)
T ss_pred HHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHC---------CCCeeeeeCCCCHHHHHHHHHHHhcC-------C
Confidence 122222222 223567899999999999999999864 78999999999999999999999999 8
Q ss_pred eEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccchhhhc
Q 005605 346 RKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFN 422 (688)
Q Consensus 346 ~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~~ 422 (688)
.+|||||+++++|||+|+|++||++|+ |.|.++|.||+|||||. .+|.|+.||+..++.
T Consensus 731 i~VLVATdAFGMGIDkPDVR~VIHydl------------------PkSiEsYyQriGRAGRDG~~g~cILlys~~D~~ 790 (1195)
T PLN03137 731 INIICATVAFGMGINKPDVRFVIHHSL------------------PKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYI 790 (1195)
T ss_pred CcEEEEechhhcCCCccCCcEEEEcCC------------------CCCHHHHHhhhcccCCCCCCceEEEEecHHHHH
Confidence 899999999999999999999999999 99999999999999999 899999999987764
No 52
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=9e-34 Score=323.54 Aligned_cols=324 Identities=15% Similarity=0.210 Sum_probs=223.4
Q ss_pred CCChHHHHHHHH-hcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhh
Q 005605 50 PYSQRYYEILEK-RKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVA 128 (688)
Q Consensus 50 ~l~~~~~~~l~~-~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~ 128 (688)
+.++...+.+++ .|+..++++|+++++.+.+|+++++++|||||||+.+..+.+... ...++++|+..+
T Consensus 8 ~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~~-------g~tlVisPl~sL--- 77 (607)
T PRK11057 8 NLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVLD-------GLTLVVSPLISL--- 77 (607)
T ss_pred CchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHcC-------CCEEEEecHHHH---
Confidence 344555566655 488889999999999999999999999999999998877766432 124455554443
Q ss_pred hccHHHHHHHhhcccccceeceeee------ecccccccccccccCHHHHHHHHhcccc-ccCCcEEeecccCcChhhHH
Q 005605 129 AMSVSRRVAEEMDVTIGEEVGYSIR------FEDCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLATD 201 (688)
Q Consensus 129 ~~~v~~~v~~~~~~~~~~~vg~~~~------~~~~~~~~~~i~~lT~G~l~~~~~~~~l-l~~~~~lIlDEaher~~~~d 201 (688)
+.+..+.+.. .+.......+.... +.........+.++||+++........+ ..++++||+||||.-+.+..
T Consensus 78 ~~dqv~~l~~-~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~ 156 (607)
T PRK11057 78 MKDQVDQLLA-NGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGH 156 (607)
T ss_pred HHHHHHHHHH-cCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccC
Confidence 3333333332 23222111111000 0111122345778899988743322222 45799999999996433221
Q ss_pred -H--HHHHHHHHHhcCCCcEEEEecccccHHH---HHchh-cCCCeeeeCCcccccceeecCCCchhHHHHHHHHHHHHH
Q 005605 202 -V--LFGLLKEVLKNRPDLKLVVMSATLEAEK---FQGYF-YGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIH 274 (688)
Q Consensus 202 -~--ll~~l~~i~~~~~~~~vil~SAT~~~~~---~~~~~-~~~p~~~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~ 274 (688)
+ .+..+..+....|+.+++++|||++... +...+ ...|.+.+.+...| ...|.......... .+....
T Consensus 157 ~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~-nl~~~v~~~~~~~~----~l~~~l 231 (607)
T PRK11057 157 DFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRP-NIRYTLVEKFKPLD----QLMRYV 231 (607)
T ss_pred cccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCC-cceeeeeeccchHH----HHHHHH
Confidence 2 2334555555667899999999996533 23332 24555555443322 22232222222222 223333
Q ss_pred hcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCc
Q 005605 275 MCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNI 354 (688)
Q Consensus 275 ~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTni 354 (688)
.....+++||||+++++++.+++.|... ++.+.++||+|++++|.++++.|..| ..+|||||++
T Consensus 232 ~~~~~~~~IIFc~tr~~~e~la~~L~~~---------g~~v~~~Ha~l~~~~R~~i~~~F~~g-------~~~VLVaT~a 295 (607)
T PRK11057 232 QEQRGKSGIIYCNSRAKVEDTAARLQSR---------GISAAAYHAGLDNDVRADVQEAFQRD-------DLQIVVATVA 295 (607)
T ss_pred HhcCCCCEEEEECcHHHHHHHHHHHHhC---------CCCEEEecCCCCHHHHHHHHHHHHCC-------CCCEEEEech
Confidence 3345678999999999999999999874 78899999999999999999999998 8899999999
Q ss_pred cccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccchhhhcc
Q 005605 355 AETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFNN 423 (688)
Q Consensus 355 ae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~~~ 423 (688)
+++|||+|+|++||++|+ |.|.++|+||+|||||. .+|.|+.||+..+...
T Consensus 296 ~~~GIDip~V~~VI~~d~------------------P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~ 347 (607)
T PRK11057 296 FGMGINKPNVRFVVHFDI------------------PRNIESYYQETGRAGRDGLPAEAMLFYDPADMAW 347 (607)
T ss_pred hhccCCCCCcCEEEEeCC------------------CCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHH
Confidence 999999999999999999 99999999999999999 7899999999887543
No 53
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=5.8e-34 Score=301.26 Aligned_cols=342 Identities=15% Similarity=0.208 Sum_probs=281.2
Q ss_pred CCCCCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEc
Q 005605 43 INRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACT 122 (688)
Q Consensus 43 ~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t 122 (688)
...|+.+.+...+...|...++..++++|...||++..+-+++|++.+|+|||..|-...++..+... ...+.++++||
T Consensus 24 ~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~-~~~q~~Iv~PT 102 (980)
T KOG4284|consen 24 TPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRS-SHIQKVIVTPT 102 (980)
T ss_pred CCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCccc-CcceeEEEecc
Confidence 34699999999999999999999999999999999999999999999999999998877777664322 22457788999
Q ss_pred CCchhhhccHHHHHHHh-hcccccceeceeeee-cccccccccccccCHHHHHHHHhcccc-ccCCcEEeecccCcChhh
Q 005605 123 QPRRVAAMSVSRRVAEE-MDVTIGEEVGYSIRF-EDCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLA 199 (688)
Q Consensus 123 ~p~~~~~~~v~~~v~~~-~~~~~~~~vg~~~~~-~~~~~~~~~i~~lT~G~l~~~~~~~~l-l~~~~~lIlDEaher~~~ 199 (688)
++.++|+.++...++.. .+..+...+|+.... +......++|.+.|||++..+.-.+.+ .++++++||||||. .++
T Consensus 103 REiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADk-L~~ 181 (980)
T KOG4284|consen 103 REIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADK-LMD 181 (980)
T ss_pred hhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHh-hhc
Confidence 99999998888888753 355666667765332 333445788999999999999888887 99999999999994 566
Q ss_pred HHHHHHHHHHHHhcCC-CcEEEEeccccc---HHHHHchhcCCCeeeeCCc---ccccceeecCCCchh----HHHHHHH
Q 005605 200 TDVLFGLLKEVLKNRP-DLKLVVMSATLE---AEKFQGYFYGAPLMKVPGR---LHPVEIFYTQEPERD----YLEAAIR 268 (688)
Q Consensus 200 ~d~ll~~l~~i~~~~~-~~~vil~SAT~~---~~~~~~~~~~~p~~~v~g~---~~~v~~~~~~~~~~~----~~~~~~~ 268 (688)
+..+...+..|....| .+|++.+|||.+ .+.++.|+.+..++....+ ++.+++||...+..+ -++..+.
T Consensus 182 t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq 261 (980)
T KOG4284|consen 182 TESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQ 261 (980)
T ss_pred hhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHH
Confidence 6777777777776555 679999999995 3567788776666655443 567888877655432 2344566
Q ss_pred HHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEE
Q 005605 269 TVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKI 348 (688)
Q Consensus 269 ~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kv 348 (688)
.+-++...-+--+.|||++....++-++.+|.. .++.+..+.|.|+|.+|..++...+.- ..+|
T Consensus 262 ~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~s---------sG~d~~~ISgaM~Q~~Rl~a~~~lr~f-------~~rI 325 (980)
T KOG4284|consen 262 KLTHVFKSIPYVQALVFCDQISRAEPIATHLKS---------SGLDVTFISGAMSQKDRLLAVDQLRAF-------RVRI 325 (980)
T ss_pred HHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhc---------cCCCeEEeccccchhHHHHHHHHhhhc-------eEEE
Confidence 667777766777899999999999999999976 389999999999999999999999987 8999
Q ss_pred EEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccchhh
Q 005605 349 VVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKS 420 (688)
Q Consensus 349 lvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~ 420 (688)
|||||+.+||||-|+|..|||-|- |.+-++|.||+|||||. ..|.+++|...+.
T Consensus 326 LVsTDLtaRGIDa~~vNLVVNiD~------------------p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~ 380 (980)
T KOG4284|consen 326 LVSTDLTARGIDADNVNLVVNIDA------------------PADEETYFHRIGRAGRFGAHGAAVTLLEDER 380 (980)
T ss_pred EEecchhhccCCccccceEEecCC------------------CcchHHHHHHhhhcccccccceeEEEeccch
Confidence 999999999999999999999887 99999999999999999 7899999986544
No 54
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=2.8e-33 Score=317.88 Aligned_cols=347 Identities=19% Similarity=0.186 Sum_probs=216.6
Q ss_pred hcCCCChHHHHHHHHHHhcCC-EEEEEeCCCCChhcchhHHHhcCccCCCccccCceE-EEEcCCchhhhccHHHHHHHh
Q 005605 62 RKSLPVWQQKEEFLQVLKANQ-VIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMM-IACTQPRRVAAMSVSRRVAEE 139 (688)
Q Consensus 62 ~~~lp~~~~q~~ii~~i~~g~-~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~-i~~t~p~~~~~~~v~~~v~~~ 139 (688)
.|+. ++++|.++++.+..|+ ++++.+|||||||.++..+++- ... .....+.++ +++++++..|+...++.+.+.
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~-~~~-~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~ 88 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLA-VEI-GAKVPRRLVYVVNRRTVVDQVTEEAEKIGER 88 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcc-ccc-cccccceEEEeCchHHHHHHHHHHHHHHHHH
Confidence 4665 8999999999999998 6777899999999976544442 111 112234444 337777777887777777765
Q ss_pred hc-----------------------ccccceeceeeeeccccc--ccccccccCHHHHHHHHhcccc-------------
Q 005605 140 MD-----------------------VTIGEEVGYSIRFEDCSS--ARTVLKYLTDGMLLREAMTDPL------------- 181 (688)
Q Consensus 140 ~~-----------------------~~~~~~vg~~~~~~~~~~--~~~~i~~lT~G~l~~~~~~~~l------------- 181 (688)
+. +++...+|......+... ....|.+.|. +++..+.+
T Consensus 89 l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~~~~~pi 164 (844)
T TIGR02621 89 LPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYGCGFKSRPL 164 (844)
T ss_pred hcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCccccccccccccccc
Confidence 41 333444554322222222 2345677784 44444443
Q ss_pred ----ccCCcEEeecccCcChhhHHHHHHHHHHHHhc--CCCcEEEEecccccH--HHHHchhcCCCe-eeeCCc-c--cc
Q 005605 182 ----LERYKVIVLDEAHERTLATDVLFGLLKEVLKN--RPDLKLVVMSATLEA--EKFQGYFYGAPL-MKVPGR-L--HP 249 (688)
Q Consensus 182 ----l~~~~~lIlDEaher~~~~d~ll~~l~~i~~~--~~~~~vil~SAT~~~--~~~~~~~~~~p~-~~v~g~-~--~~ 249 (688)
+.+.++|||||||+++...+.+..+++.+... ..++|+++||||++. ..+...+...+. +.+... . ..
T Consensus 165 ~ag~L~~v~~LVLDEADLd~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~k 244 (844)
T TIGR02621 165 HAGFLGQDALIVHDEAHLEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKK 244 (844)
T ss_pred hhhhhccceEEEEehhhhccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccc
Confidence 68899999999997666565555555543111 113699999999953 344444443332 222221 1 11
Q ss_pred cceeecCCCchhHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhh-
Q 005605 250 VEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQ- 328 (688)
Q Consensus 250 v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~- 328 (688)
+.+ |.......++..++..+..+.. ...+++||||+|+++++.+++.|.+. ++ ..|||+|++.+|.
T Consensus 245 i~q-~v~v~~e~Kl~~lv~~L~~ll~-e~g~~vLVF~NTv~~Aq~L~~~L~~~---------g~--~lLHG~m~q~dR~~ 311 (844)
T TIGR02621 245 IVK-LVPPSDEKFLSTMVKELNLLMK-DSGGAILVFCRTVKHVRKVFAKLPKE---------KF--ELLTGTLRGAERDD 311 (844)
T ss_pred eEE-EEecChHHHHHHHHHHHHHHHh-hCCCcEEEEECCHHHHHHHHHHHHhc---------CC--eEeeCCCCHHHHhh
Confidence 233 3333333344444444443332 45688999999999999999999763 33 8999999999999
Q ss_pred ----cccCCCCC----CCCCCCCCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhh
Q 005605 329 ----KIFEPAPP----PSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQR 400 (688)
Q Consensus 329 ----~~~~~~~~----g~~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR 400 (688)
++++.|++ +.........+|||||+++|+||||+. ++||+... | .++|+||
T Consensus 312 ~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~a------------------P--~esyIQR 370 (844)
T TIGR02621 312 LVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLA------------------P--FESMQQR 370 (844)
T ss_pred HHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCC------------------C--HHHHHHH
Confidence 77888876 310001123689999999999999997 67776433 5 4899999
Q ss_pred ccccCCC-CC-ceEEEccchhhhcccC-CCCCCCcccccCcHHHHHHHHHcCC
Q 005605 401 SGRAGRT-QP-GKCFRLYTEKSFNNDL-QPQTYPEILRSNLANTVLTLKKLGI 450 (688)
Q Consensus 401 ~GRaGR~-~~-G~~~~l~t~~~~~~~l-~~~~~pei~r~~l~~~~L~l~~~~~ 450 (688)
+||+||. +. |..+.+++.+ +...- ....-|++++..+..+.+..+..|.
T Consensus 371 iGRtgR~G~~~~~~i~vv~~~-~~~~~~~~vY~~~~l~~t~~~L~~~~~~~~~ 422 (844)
T TIGR02621 371 FGRVNRFGELQACQIAVVHLD-LGKDQDFDVYGKKIDKSTWSTLKKLQQLKGK 422 (844)
T ss_pred hcccCCCCCCCCceEEEEeec-cCCCcccCCCCHHHHHHHHHHHHHHHhcccc
Confidence 9999999 43 4446665442 11101 1122356776665555444444443
No 55
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.5e-34 Score=301.93 Aligned_cols=349 Identities=15% Similarity=0.178 Sum_probs=260.2
Q ss_pred cCCCccCCCCCC----CCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCC--
Q 005605 37 NNNNSLINRWNG----KPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIET-- 110 (688)
Q Consensus 37 ~~~~~~~~~f~~----~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~-- 110 (688)
...+..+.+|.+ ...++++.+.+...++..++++|.++++.+.++++++.++|||||||.++..|+++......
T Consensus 125 ~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~ 204 (593)
T KOG0344|consen 125 FHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQE 204 (593)
T ss_pred CCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcc
Confidence 334556677877 45678888999999999999999999999999999999999999999999999887653222
Q ss_pred --ccccCceEEEEcCCchhhhccHHHHHH--Hhhcccccceeceee----eecccccccccccccCHHHHHHHHhccc--
Q 005605 111 --PDRRRKMMIACTQPRRVAAMSVSRRVA--EEMDVTIGEEVGYSI----RFEDCSSARTVLKYLTDGMLLREAMTDP-- 180 (688)
Q Consensus 111 --~~~~~~~~i~~t~p~~~~~~~v~~~v~--~~~~~~~~~~vg~~~----~~~~~~~~~~~i~~lT~G~l~~~~~~~~-- 180 (688)
..+-+++++.|+++++.|....+..+. .+.+..+... .|.. +.........++.+.||-++..++...+
T Consensus 205 ~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~-~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~ 283 (593)
T KOG0344|consen 205 KHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQF-SKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLN 283 (593)
T ss_pred cCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhc-ccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCcc
Confidence 222346677788887777766655555 3322222111 1110 0001112345566789999888887765
Q ss_pred -cccCCcEEeecccCcChhhHHHHHHHHHHHHhc--CCCcEEEEecccc--cHHHHHchhcCCCeeeeCCcc----cccc
Q 005605 181 -LLERYKVIVLDEAHERTLATDVLFGLLKEVLKN--RPDLKLVVMSATL--EAEKFQGYFYGAPLMKVPGRL----HPVE 251 (688)
Q Consensus 181 -ll~~~~~lIlDEaher~~~~d~ll~~l~~i~~~--~~~~~vil~SAT~--~~~~~~~~~~~~p~~~v~g~~----~~v~ 251 (688)
.+.++.++|+||+|. ......+...+..+... .|+.++-+||||+ .++.++......++..+-|.. ..|+
T Consensus 284 idl~~V~~lV~dEaD~-lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~ 362 (593)
T KOG0344|consen 284 IDLSKVEWLVVDEADL-LFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVD 362 (593)
T ss_pred chhheeeeEeechHHh-hhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhh
Confidence 499999999999983 34443555555555542 3688899999999 468888776666665555532 2344
Q ss_pred eeecCCCchhHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhccc
Q 005605 252 IFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIF 331 (688)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~ 331 (688)
+....+....- .+-.+.++....-+.++|||+-+.+.+.++...|.. .+++.+-.+||..++.+|..++
T Consensus 363 QelvF~gse~~---K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~--------~~~i~v~vIh~e~~~~qrde~~ 431 (593)
T KOG0344|consen 363 QELVFCGSEKG---KLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEI--------YDNINVDVIHGERSQKQRDETM 431 (593)
T ss_pred hhheeeecchh---HHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhh--------ccCcceeeEecccchhHHHHHH
Confidence 44444332221 233344444445677899999999999999988852 2589999999999999999999
Q ss_pred CCCCCCCCCCCCCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCc
Q 005605 332 EPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPG 410 (688)
Q Consensus 332 ~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G 410 (688)
+.|+.| +.+|++|||+.+||||+.||..|||||+ |.|.-+|+||+||+||+ +.|
T Consensus 432 ~~FR~g-------~IwvLicTdll~RGiDf~gvn~VInyD~------------------p~s~~syihrIGRtgRag~~g 486 (593)
T KOG0344|consen 432 ERFRIG-------KIWVLICTDLLARGIDFKGVNLVINYDF------------------PQSDLSYIHRIGRTGRAGRSG 486 (593)
T ss_pred HHHhcc-------CeeEEEehhhhhccccccCcceEEecCC------------------CchhHHHHHHhhccCCCCCCc
Confidence 999999 9999999999999999999999999999 99999999999999999 889
Q ss_pred eEEEccchhhhcc
Q 005605 411 KCFRLYTEKSFNN 423 (688)
Q Consensus 411 ~~~~l~t~~~~~~ 423 (688)
.+|+|||+++...
T Consensus 487 ~Aitfytd~d~~~ 499 (593)
T KOG0344|consen 487 KAITFYTDQDMPR 499 (593)
T ss_pred ceEEEeccccchh
Confidence 9999999966543
No 56
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.7e-34 Score=288.67 Aligned_cols=340 Identities=16% Similarity=0.173 Sum_probs=265.8
Q ss_pred CCCCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcC
Q 005605 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQ 123 (688)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~ 123 (688)
..|..++|+....+++.+.|+..++++|++.||.++++++++..|-||||||.++..+.++...-......+++++.|++
T Consensus 21 g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilsptr 100 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTR 100 (529)
T ss_pred CCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcH
Confidence 46999999999999999999999999999999999999999999999999999999999887632222334678899999
Q ss_pred CchhhhccHHHHHHHhhcccccceeceeeeecccccc--cccccccCHHHHHHHHhcccc-ccCCcEEeecccCcChhhH
Q 005605 124 PRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSA--RTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLAT 200 (688)
Q Consensus 124 p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~--~~~i~~lT~G~l~~~~~~~~l-l~~~~~lIlDEaher~~~~ 200 (688)
++.+|+..+.+.+++..+......+|+....++.... +..+...|||+++.+.....+ |+.+.++|+||+| |...+
T Consensus 101 eLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad-rlfem 179 (529)
T KOG0337|consen 101 ELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD-RLFEM 179 (529)
T ss_pred HHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhh-HHHhh
Confidence 9999999999999888777766677765433333333 456677899999887766555 9999999999999 66667
Q ss_pred HHHHHHHHHHHhcCCCcEEEEecccccHH--HHHchhcCCCeee---eCCc-ccccceeecCCCchhHHHHHHHHHHHHH
Q 005605 201 DVLFGLLKEVLKNRPDLKLVVMSATLEAE--KFQGYFYGAPLMK---VPGR-LHPVEIFYTQEPERDYLEAAIRTVVQIH 274 (688)
Q Consensus 201 d~ll~~l~~i~~~~~~~~vil~SAT~~~~--~~~~~~~~~p~~~---v~g~-~~~v~~~~~~~~~~~~~~~~~~~l~~i~ 274 (688)
+|-..+-+.+.+...+.|+++||||++-. .|++--...|+.. ++.+ ....++.|......++...++..+-...
T Consensus 180 gfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~il~~~~ 259 (529)
T KOG0337|consen 180 GFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSILGGRI 259 (529)
T ss_pred hhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHHHHhccc
Confidence 55444444444444478999999999643 4554433344322 2222 2234455555555554433333222221
Q ss_pred hcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCc
Q 005605 275 MCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNI 354 (688)
Q Consensus 275 ~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTni 354 (688)
.+.+.+||++++..++.+...|... ++.+-.++|+|.++.|..-+..|..+ +-.+++.||+
T Consensus 260 ---~~~~t~vf~~tk~hve~~~~ll~~~---------g~~~s~iysslD~~aRk~~~~~F~~~-------k~~~lvvTdv 320 (529)
T KOG0337|consen 260 ---KDKQTIVFVATKHHVEYVRGLLRDF---------GGEGSDIYSSLDQEARKINGRDFRGR-------KTSILVVTDV 320 (529)
T ss_pred ---cccceeEEecccchHHHHHHHHHhc---------CCCccccccccChHhhhhccccccCC-------ccceEEEehh
Confidence 2447999999999999999998874 68888899999999999999999988 7899999999
Q ss_pred cccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccchhhh
Q 005605 355 AETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (688)
Q Consensus 355 ae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (688)
|+||+|||..+-|||+++ |.+..-++||+||+.|+ +.|.+|.++...+.
T Consensus 321 aaRG~diplldnvinyd~------------------p~~~klFvhRVgr~aragrtg~aYs~V~~~~~ 370 (529)
T KOG0337|consen 321 AARGLDIPLLDNVINYDF------------------PPDDKLFVHRVGRVARAGRTGRAYSLVASTDD 370 (529)
T ss_pred hhccCCCccccccccccC------------------CCCCceEEEEecchhhccccceEEEEEecccc
Confidence 999999999999999999 99999999999999999 79999999887543
No 57
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.98 E-value=2.9e-31 Score=313.20 Aligned_cols=334 Identities=18% Similarity=0.173 Sum_probs=219.4
Q ss_pred CChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCC--ccccCceEEEEcCCchhh
Q 005605 51 YSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIET--PDRRRKMMIACTQPRRVA 128 (688)
Q Consensus 51 l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~--~~~~~~~~i~~t~p~~~~ 128 (688)
+++.+.+.+++ ++-.++++|.++++.+.+|+++++++|||||||.++..++++...... .....++.+++..|++..
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 67888888766 577799999999999999999999999999999999888776531100 000112233334455555
Q ss_pred hccHHHHHHH----------hhcccc-----cceeceeeeeccc--ccccccccccCHHHHHHHHhccc---cccCCcEE
Q 005605 129 AMSVSRRVAE----------EMDVTI-----GEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDP---LLERYKVI 188 (688)
Q Consensus 129 ~~~v~~~v~~----------~~~~~~-----~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~~~~~~~~---ll~~~~~l 188 (688)
+.++.+++.. ..+... +...|.....+.. ......|.++||+.+..++.... .+.++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 5555544332 112221 1111211110100 01234678899999876664432 47899999
Q ss_pred eecccCcChhh---HHHHHHHHHHHHhcC-CCcEEEEecccc-cHHHHHchhcCC-------CeeeeCCc---cccccee
Q 005605 189 VLDEAHERTLA---TDVLFGLLKEVLKNR-PDLKLVVMSATL-EAEKFQGYFYGA-------PLMKVPGR---LHPVEIF 253 (688)
Q Consensus 189 IlDEaher~~~---~d~ll~~l~~i~~~~-~~~~vil~SAT~-~~~~~~~~~~~~-------p~~~v~g~---~~~v~~~ 253 (688)
|+||+|. ..+ ...+...+.++.... ++.+.|++|||+ +.+.+++++.+. ++..+.+. ...+...
T Consensus 177 VIDE~H~-l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~ 255 (876)
T PRK13767 177 IVDEIHS-LAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVI 255 (876)
T ss_pred EEechhh-hccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEe
Confidence 9999995 221 112233333333322 478999999999 567777776542 22333221 1111111
Q ss_pred ec-----CCCchhHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhh
Q 005605 254 YT-----QEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQ 328 (688)
Q Consensus 254 ~~-----~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~ 328 (688)
.. ..............+..+.. ..+++|||++|++.++.++..|.+.... ...+..+..+||+|++++|.
T Consensus 256 ~p~~~l~~~~~~~~~~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~~---~~~~~~i~~hHg~ls~~~R~ 330 (876)
T PRK13767 256 SPVDDLIHTPAEEISEALYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFPE---EYDEDNIGAHHSSLSREVRL 330 (876)
T ss_pred ccCccccccccchhHHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhchh---hccccceeeeeCCCCHHHHH
Confidence 10 01111112223334444332 3568999999999999999999864311 01246799999999999999
Q ss_pred cccCCCCCCCCCCCCCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-
Q 005605 329 KIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT- 407 (688)
Q Consensus 329 ~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~- 407 (688)
.+++.|++| ..+|||||+++|+|||||+|++||++|. |.|.++|+||+|||||.
T Consensus 331 ~ve~~fk~G-------~i~vLVaTs~Le~GIDip~Vd~VI~~~~------------------P~sv~~ylQRiGRaGR~~ 385 (876)
T PRK13767 331 EVEEKLKRG-------ELKVVVSSTSLELGIDIGYIDLVVLLGS------------------PKSVSRLLQRIGRAGHRL 385 (876)
T ss_pred HHHHHHHcC-------CCeEEEECChHHhcCCCCCCcEEEEeCC------------------CCCHHHHHHhcccCCCCC
Confidence 999999999 8999999999999999999999999998 99999999999999986
Q ss_pred C---CceEEEcc
Q 005605 408 Q---PGKCFRLY 416 (688)
Q Consensus 408 ~---~G~~~~l~ 416 (688)
. .|.+|...
T Consensus 386 g~~~~g~ii~~~ 397 (876)
T PRK13767 386 GEVSKGRIIVVD 397 (876)
T ss_pred CCCCcEEEEEcC
Confidence 2 47777653
No 58
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.97 E-value=4.1e-30 Score=269.67 Aligned_cols=448 Identities=18% Similarity=0.188 Sum_probs=307.3
Q ss_pred CCCCCCCCChHHHHHHHHhcCCCChHHHHHHHHH-HhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEc
Q 005605 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQV-LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACT 122 (688)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~-i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t 122 (688)
-+.+++.+++.++.+++.+|+..+.|+|.-.+++ +.+|++..++++|+||||+.--..=+... +. .+..+++.
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~-l~-----~g~KmlfL 267 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRL-LS-----GGKKMLFL 267 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHH-Hh-----CCCeEEEE
Confidence 4688999999999999999999999999998887 89999999999999999975322111111 11 12235666
Q ss_pred CCchhhhccHHHHHHHh---hcccccceeceeeeec------ccccccccccccCHHHHHHHHhccccccCCcEEeeccc
Q 005605 123 QPRRVAAMSVSRRVAEE---MDVTIGEEVGYSIRFE------DCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEA 193 (688)
Q Consensus 123 ~p~~~~~~~v~~~v~~~---~~~~~~~~vg~~~~~~------~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEa 193 (688)
-|+...+.+-.+.+.+. ++..+.-.||.+.-.. .....+..|.+.|..-.-.++.....+.++..+|+||+
T Consensus 268 vPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEi 347 (830)
T COG1202 268 VPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEI 347 (830)
T ss_pred ehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeee
Confidence 67766666666666543 3444444556432111 12234667777787666566666677999999999999
Q ss_pred CcChhhHH----HHHHHHHHHHhcCCCcEEEEecccc-cHHHHHchhcCCCeeeeCCcccccceeecCCC-chhHHHHHH
Q 005605 194 HERTLATD----VLFGLLKEVLKNRPDLKLVVMSATL-EAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEP-ERDYLEAAI 267 (688)
Q Consensus 194 her~~~~d----~ll~~l~~i~~~~~~~~vil~SAT~-~~~~~~~~~~~~p~~~v~g~~~~v~~~~~~~~-~~~~~~~~~ 267 (688)
|. ++.+ -+-+++.++....|+.|.|.+|||. +++.++.+++ +..+..++|.-|++-|..... ..++.....
T Consensus 348 Ht--L~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~elA~~l~-a~lV~y~~RPVplErHlvf~~~e~eK~~ii~ 424 (830)
T COG1202 348 HT--LEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPEELAKKLG-AKLVLYDERPVPLERHLVFARNESEKWDIIA 424 (830)
T ss_pred ee--ccchhcccchhhHHHHHHHhCCCCeEEEEEeecCChHHHHHHhC-CeeEeecCCCCChhHeeeeecCchHHHHHHH
Confidence 93 3221 2556666666668899999999999 8999999985 666777888888887766554 333322222
Q ss_pred HHHHH----HHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCC
Q 005605 268 RTVVQ----IHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGP 343 (688)
Q Consensus 268 ~~l~~----i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~ 343 (688)
..+.. .....-.|++|||..++..++.++..|... ++.+.|+|++|+..+|+.+...|..+
T Consensus 425 ~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~k---------G~~a~pYHaGL~y~eRk~vE~~F~~q------ 489 (830)
T COG1202 425 RLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGK---------GLKAAPYHAGLPYKERKSVERAFAAQ------ 489 (830)
T ss_pred HHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcC---------CcccccccCCCcHHHHHHHHHHHhcC------
Confidence 21111 112234799999999999999999999864 89999999999999999999999998
Q ss_pred CceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC---CCceEEEccchh-
Q 005605 344 PGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT---QPGKCFRLYTEK- 419 (688)
Q Consensus 344 ~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~---~~G~~~~l~t~~- 419 (688)
...++|+|-..+.|+|+|.-.+|.++=. +-..|.|..++.|+.|||||. ..|++|.|....
T Consensus 490 -~l~~VVTTAAL~AGVDFPASQVIFEsLa--------------MG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~ 554 (830)
T COG1202 490 -ELAAVVTTAALAAGVDFPASQVIFESLA--------------MGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGK 554 (830)
T ss_pred -CcceEeehhhhhcCCCCchHHHHHHHHH--------------cccccCCHHHHHHHhcccCCCCcccCceEEEEecCCh
Confidence 8899999999999999998777665432 122399999999999999998 579999986532
Q ss_pred hhcccCCCC----------CCCcccc-----cCcHHHHHHHHHcCCCCCcc-ccCCC---CCcHHHHHHHHHHHHHcCCc
Q 005605 420 SFNNDLQPQ----------TYPEILR-----SNLANTVLTLKKLGIDDLVH-FDFMD---PPAPETLMRALEVLNYLGAL 480 (688)
Q Consensus 420 ~~~~~l~~~----------~~pei~r-----~~l~~~~L~l~~~~~~~~~~-f~~~~---~P~~~~i~~a~~~L~~lgal 480 (688)
.|...|... ..||-.. .+-.+-+|. ..|+.+-.. .+-+. --..-..+.++..|.++|.|
T Consensus 555 ~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~e~e~vLA--~~~v~~s~~~i~~v~~~~~g~~~~~~k~l~~Lee~g~i 632 (830)
T COG1202 555 KYHASMEETEDEVAFKLLESEPEPVIVEYDEEDEEENVLA--SAGVTNSLSVIERVNSLMLGAAFDPKKALSKLEEYGMI 632 (830)
T ss_pred hhcccccccHHHHHHHHhcCCCCcceeccCcHHHHHHHHH--HhhhcCcHHHHhhcChhhccccCCHHHHHHHHHhcCCe
Confidence 333322221 1122111 111122222 223221110 00000 00012246789999999999
Q ss_pred cCCC---CcChhhhhcccCCCChhhhhhhhhcCCCCChHHHHHHHHHhcC-CCCCCCC
Q 005605 481 DDDG---NLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSV-PNCFVRP 534 (688)
Q Consensus 481 d~~~---~lT~lG~~~~~lpl~p~~~k~ll~~~~~~c~~~~l~i~a~ls~-~~~f~~~ 534 (688)
+.+| ++|+.|+.++.--+.|.-|..|..++ ....+| +.|++.|.- .+.++.+
T Consensus 633 ~~~G~~v~~T~yGrava~~Fl~p~~a~~Ir~~v-~~~~~p-l~i~~~l~pfE~ayls~ 688 (830)
T COG1202 633 KKKGNIVRPTPYGRAVAMSFLGPSEAEFIREGV-LASMDP-LRIAAELEPFENAYLSG 688 (830)
T ss_pred eccCCEeeeccccceeEEeecCchHHHHHHHhh-hccCCh-HhHhhccccccccccCh
Confidence 9887 68999999999999999999998885 222344 445555443 3444443
No 59
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.97 E-value=9.9e-31 Score=299.31 Aligned_cols=310 Identities=15% Similarity=0.165 Sum_probs=213.0
Q ss_pred hcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhc
Q 005605 62 RKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (688)
Q Consensus 62 ~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (688)
.|+..+.+.|.++++++.+|+++++++|||+|||+.+..+.+... ...++++ |+.....+..+.+.. .+
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~~-------g~~lVis---Pl~sL~~dq~~~l~~-~g 77 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLLK-------GLTVVIS---PLISLMKDQVDQLRA-AG 77 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHcC-------CcEEEEc---CCHHHHHHHHHHHHH-cC
Confidence 588889999999999999999999999999999998887766422 1234444 444333334444433 23
Q ss_pred ccccceeceeeeec-------ccccccccccccCHHHHHHHHhcccc-ccCCcEEeecccCcChhhH-HH--HHHHHHHH
Q 005605 142 VTIGEEVGYSIRFE-------DCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLAT-DV--LFGLLKEV 210 (688)
Q Consensus 142 ~~~~~~vg~~~~~~-------~~~~~~~~i~~lT~G~l~~~~~~~~l-l~~~~~lIlDEaher~~~~-d~--ll~~l~~i 210 (688)
..+...-+ ..... ........+.++||+++......+.+ ..++++||+||||.-+.+. ++ .+..+..+
T Consensus 78 i~~~~~~s-~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l 156 (591)
T TIGR01389 78 VAAAYLNS-TLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSL 156 (591)
T ss_pred CcEEEEeC-CCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHH
Confidence 32211111 11000 01112345678899988643332222 5689999999999643322 22 22334444
Q ss_pred HhcCCCcEEEEecccccHHH---HHchhc-CCCeeeeCCcccccceeecCCCchhHHHHHHHHHHHHHhcCCCCCEEEec
Q 005605 211 LKNRPDLKLVVMSATLEAEK---FQGYFY-GAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFL 286 (688)
Q Consensus 211 ~~~~~~~~vil~SAT~~~~~---~~~~~~-~~p~~~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl 286 (688)
....|+..++++|||.+... +..++. ..+.+.+.+... ...+|......+.... +.........++.|||+
T Consensus 157 ~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r-~nl~~~v~~~~~~~~~----l~~~l~~~~~~~~IIf~ 231 (591)
T TIGR01389 157 AERFPQVPRIALTATADAETRQDIRELLRLADANEFITSFDR-PNLRFSVVKKNNKQKF----LLDYLKKHRGQSGIIYA 231 (591)
T ss_pred HHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCC-CCcEEEEEeCCCHHHH----HHHHHHhcCCCCEEEEE
Confidence 55556667999999996543 344443 233333333222 2233333222233222 22233333457899999
Q ss_pred CcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCcccCCeEE
Q 005605 287 TGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVY 366 (688)
Q Consensus 287 ~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~ 366 (688)
+++++++.+++.|... ++.+.++||+|+.++|..+++.|..| ..+|||||+++++|||+|+|++
T Consensus 232 ~sr~~~e~la~~L~~~---------g~~~~~~H~~l~~~~R~~i~~~F~~g-------~~~vlVaT~a~~~GID~p~v~~ 295 (591)
T TIGR01389 232 SSRKKVEELAERLESQ---------GISALAYHAGLSNKVRAENQEDFLYD-------DVKVMVATNAFGMGIDKPNVRF 295 (591)
T ss_pred CcHHHHHHHHHHHHhC---------CCCEEEEECCCCHHHHHHHHHHHHcC-------CCcEEEEechhhccCcCCCCCE
Confidence 9999999999999763 68899999999999999999999998 7899999999999999999999
Q ss_pred EEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccchhhhc
Q 005605 367 VIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFN 422 (688)
Q Consensus 367 VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~~ 422 (688)
||++++ |.|.++|.||+|||||. .+|.|+.+|+..+..
T Consensus 296 VI~~~~------------------p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~ 334 (591)
T TIGR01389 296 VIHYDM------------------PGNLESYYQEAGRAGRDGLPAEAILLYSPADIA 334 (591)
T ss_pred EEEcCC------------------CCCHHHHhhhhccccCCCCCceEEEecCHHHHH
Confidence 999999 99999999999999999 789999999987754
No 60
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.97 E-value=6.4e-30 Score=298.79 Aligned_cols=315 Identities=15% Similarity=0.170 Sum_probs=211.5
Q ss_pred hHHHHHHHH-hcCCCChHHHHHHHHHHhcC------CEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCc
Q 005605 53 QRYYEILEK-RKSLPVWQQKEEFLQVLKAN------QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPR 125 (688)
Q Consensus 53 ~~~~~~l~~-~~~lp~~~~q~~ii~~i~~g------~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~ 125 (688)
..+.+.+.+ -++ .+++.|.++++.+.++ .+.+++|+||||||..+..+++.... .. .+.++++||+.+
T Consensus 438 ~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~-~g---~qvlvLvPT~~L 512 (926)
T TIGR00580 438 LEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL-DG---KQVAVLVPTTLL 512 (926)
T ss_pred HHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH-hC---CeEEEEeCcHHH
Confidence 344444444 466 4689999999999875 67899999999999988777665431 11 346677777777
Q ss_pred hhhhccHHHHHHHhhcccccceeceeeeecc------cccccccccccCHHHHHHHHhccccccCCcEEeecccCcChhh
Q 005605 126 RVAAMSVSRRVAEEMDVTIGEEVGYSIRFED------CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLA 199 (688)
Q Consensus 126 ~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~------~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEaher~~~ 199 (688)
+.|....+.......+..+....|.....+. ....+..|.+.|+.. +.....+.++++||+||+|. ..
T Consensus 513 A~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l~~~v~f~~L~llVIDEahr--fg 586 (926)
T TIGR00580 513 AQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----LQKDVKFKDLGLLIIDEEQR--FG 586 (926)
T ss_pred HHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----hhCCCCcccCCEEEeecccc--cc
Confidence 7666655554444344443333332211110 011234566778742 22333588999999999995 22
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEecccccHHHHHchh--cCCC-eeeeC-CcccccceeecCCCchhHHHHHHHHHHHHHh
Q 005605 200 TDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYF--YGAP-LMKVP-GRLHPVEIFYTQEPERDYLEAAIRTVVQIHM 275 (688)
Q Consensus 200 ~d~ll~~l~~i~~~~~~~~vil~SAT~~~~~~~~~~--~~~p-~~~v~-g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~ 275 (688)
.. ....++ ...++.++++||||+....+...+ ...+ ++..+ ....+++.++..... .. ....+....
T Consensus 587 v~-~~~~L~---~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~~-~~---i~~~i~~el- 657 (926)
T TIGR00580 587 VK-QKEKLK---ELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFVMEYDP-EL---VREAIRREL- 657 (926)
T ss_pred hh-HHHHHH---hcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEEEecCH-HH---HHHHHHHHH-
Confidence 21 223333 234578999999998655443222 1122 22222 223466666554321 11 112222222
Q ss_pred cCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCcc
Q 005605 276 CEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIA 355 (688)
Q Consensus 276 ~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTnia 355 (688)
...|+++||+|+.++++.+++.|.+.. +++.+..+||+|++++|.++++.|++| +.+|||||+++
T Consensus 658 -~~g~qv~if~n~i~~~e~l~~~L~~~~-------p~~~v~~lHG~m~~~eRe~im~~F~~G-------k~~ILVaT~ii 722 (926)
T TIGR00580 658 -LRGGQVFYVHNRIESIEKLATQLRELV-------PEARIAIAHGQMTENELEEVMLEFYKG-------EFQVLVCTTII 722 (926)
T ss_pred -HcCCeEEEEECCcHHHHHHHHHHHHhC-------CCCeEEEecCCCCHHHHHHHHHHHHcC-------CCCEEEECChh
Confidence 236799999999999999999998752 468899999999999999999999999 89999999999
Q ss_pred ccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccchh
Q 005605 356 ETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEK 419 (688)
Q Consensus 356 e~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~ 419 (688)
|+|||||+|++||.++.. .-+.++|.||+||+||. +.|.||.|++..
T Consensus 723 e~GIDIp~v~~VIi~~a~-----------------~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 723 ETGIDIPNANTIIIERAD-----------------KFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred hcccccccCCEEEEecCC-----------------CCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 999999999999975541 12456899999999999 899999999754
No 61
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.96 E-value=1.2e-28 Score=278.76 Aligned_cols=387 Identities=17% Similarity=0.189 Sum_probs=272.5
Q ss_pred CChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCC--ccccCceEEEEcCCchhh
Q 005605 51 YSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIET--PDRRRKMMIACTQPRRVA 128 (688)
Q Consensus 51 l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~--~~~~~~~~i~~t~p~~~~ 128 (688)
+++.+.+.++.+ +..+++.|.++++.+.+|++++|++|||||||.+..+++++.. ... .....++..+.-.|++..
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l-~~~~~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINEL-LSLGKGKLEDGIYALYISPLKAL 85 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHH-HhccCCCCCCceEEEEeCcHHHH
Confidence 789999999988 8899999999999999999999999999999999888887765 222 122235667777898888
Q ss_pred hccHHHHHH---Hhhcccccceeceeeeeccccccc--ccccccCHHHHHHHHhccc---cccCCcEEeecccCcChhh-
Q 005605 129 AMSVSRRVA---EEMDVTIGEEVGYSIRFEDCSSAR--TVLKYLTDGMLLREAMTDP---LLERYKVIVLDEAHERTLA- 199 (688)
Q Consensus 129 ~~~v~~~v~---~~~~~~~~~~vg~~~~~~~~~~~~--~~i~~lT~G~l~~~~~~~~---ll~~~~~lIlDEaher~~~- 199 (688)
+..+..|+. ..+|..+....|.....+.....+ ..|.++||+.+.-++.+.. .|.+++++|+||+|+-..+
T Consensus 86 n~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 86 NNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccc
Confidence 888877774 455666644445443333332222 3466789999998887744 4999999999999963222
Q ss_pred HH-HHHHHHHHHHhcCCCcEEEEecccc-cHHHHHchhcCC----CeeeeCC-cccccceeecCCCc---hhHHHHHHHH
Q 005605 200 TD-VLFGLLKEVLKNRPDLKLVVMSATL-EAEKFQGYFYGA----PLMKVPG-RLHPVEIFYTQEPE---RDYLEAAIRT 269 (688)
Q Consensus 200 ~d-~ll~~l~~i~~~~~~~~vil~SAT~-~~~~~~~~~~~~----p~~~v~g-~~~~v~~~~~~~~~---~~~~~~~~~~ 269 (688)
.+ .+--.+.++....++.|-|..|||. +.+..++|+.+. .++.+.+ +...+++....... ..........
T Consensus 166 RG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~ 245 (814)
T COG1201 166 RGVQLALSLERLRELAGDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYER 245 (814)
T ss_pred cchhhhhhHHHHHhhCcccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHH
Confidence 11 1333344444444478999999999 788899998654 3444433 23333333332220 1112334555
Q ss_pred HHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEE
Q 005605 270 VVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIV 349 (688)
Q Consensus 270 l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvl 349 (688)
+..+.++ ...+|||+||+...+.++..|.+.. ...+..+||+++.++|..+.+.+++| ..|++
T Consensus 246 i~~~v~~--~~ttLIF~NTR~~aE~l~~~L~~~~--------~~~i~~HHgSlSre~R~~vE~~lk~G-------~lrav 308 (814)
T COG1201 246 IAELVKK--HRTTLIFTNTRSGAERLAFRLKKLG--------PDIIEVHHGSLSRELRLEVEERLKEG-------ELKAV 308 (814)
T ss_pred HHHHHhh--cCcEEEEEeChHHHHHHHHHHHHhc--------CCceeeecccccHHHHHHHHHHHhcC-------CceEE
Confidence 5555543 3489999999999999999998752 37799999999999999999999999 89999
Q ss_pred EecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC----CCceEEEccchhhhccc-
Q 005605 350 VSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT----QPGKCFRLYTEKSFNND- 424 (688)
Q Consensus 350 vaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~----~~G~~~~l~t~~~~~~~- 424 (688)
|||.-.|-||||.+|+.||+++= |-|.+...||+||+|+. ..|..|...- .+...+
T Consensus 309 V~TSSLELGIDiG~vdlVIq~~S------------------P~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r-~dllE~~ 369 (814)
T COG1201 309 VATSSLELGIDIGDIDLVIQLGS------------------PKSVNRFLQRIGRAGHRLGEVSKGIIIAEDR-DDLLECL 369 (814)
T ss_pred EEccchhhccccCCceEEEEeCC------------------cHHHHHHhHhccccccccCCcccEEEEecCH-HHHHHHH
Confidence 99999999999999999999887 99999999999999976 3576666552 222111
Q ss_pred -------CCCCCCCcccccCcHHHHHHHHHcCCCCCcc-----------ccCCCCCcHHHHHHHHHHHHH
Q 005605 425 -------LQPQTYPEILRSNLANTVLTLKKLGIDDLVH-----------FDFMDPPAPETLMRALEVLNY 476 (688)
Q Consensus 425 -------l~~~~~pei~r~~l~~~~L~l~~~~~~~~~~-----------f~~~~~P~~~~i~~a~~~L~~ 476 (688)
-.....+++-.-+|+-+.=++.++-+....+ ++|-+- +.+.+.+.++.|..
T Consensus 370 vi~~~a~~g~le~~~i~~~~LDVLaq~ivg~~~~~~~~~~~~y~~vrraypy~~L-~~e~f~~v~~~l~~ 438 (814)
T COG1201 370 VLADLALEGKLERIKIPKNPLDVLAQQIVGMALEKVWEVEEAYRVVRRAYPYADL-SREDFRLVLRYLAG 438 (814)
T ss_pred HHHHHHHhCCcccCCCCCcchhHHHHHHHHHHhhCcCCHHHHHHHHHhccccccC-CHHHHHHHHHHHhh
Confidence 1123356666777776655555443222111 133222 35667788888877
No 62
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.96 E-value=2.9e-29 Score=299.27 Aligned_cols=309 Identities=16% Similarity=0.176 Sum_probs=204.5
Q ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHhcC------CEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCch
Q 005605 53 QRYYEILEKRKSLPVWQQKEEFLQVLKAN------QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRR 126 (688)
Q Consensus 53 ~~~~~~l~~~~~lp~~~~q~~ii~~i~~g------~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~ 126 (688)
.++.++.....+ .+++.|.++++.+..+ .+++++|+||||||..+...++... . ...+.++++||+.+.
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~--~--~g~qvlvLvPT~eLA 662 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV--E--NHKQVAVLVPTTLLA 662 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHH--H--cCCeEEEEeCcHHHH
Confidence 344555555566 6899999999999887 7899999999999986654443222 1 113455667766666
Q ss_pred hhhccHHHHHHHhhcccccceeceeeeecccc------cccccccccCHHHHHHHHhccccccCCcEEeecccCcChhhH
Q 005605 127 VAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCS------SARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLAT 200 (688)
Q Consensus 127 ~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~------~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEaher~~~~ 200 (688)
.|....+.......+..+....|+....+... .....|.+.|++.+. ....+.++++||+||+|. . ..
T Consensus 663 ~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~----~~v~~~~L~lLVIDEahr-f-G~ 736 (1147)
T PRK10689 663 QQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ----SDVKWKDLGLLIVDEEHR-F-GV 736 (1147)
T ss_pred HHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh----CCCCHhhCCEEEEechhh-c-ch
Confidence 65554444332222333333333221111111 123467788997432 233478999999999995 2 22
Q ss_pred HHHHHHHHHHHhcCCCcEEEEecccccHHH--HHchhcCCC-eeeeCC-cccccceeecCCCchhHHHHHHHHHHHHHhc
Q 005605 201 DVLFGLLKEVLKNRPDLKLVVMSATLEAEK--FQGYFYGAP-LMKVPG-RLHPVEIFYTQEPERDYLEAAIRTVVQIHMC 276 (688)
Q Consensus 201 d~ll~~l~~i~~~~~~~~vil~SAT~~~~~--~~~~~~~~p-~~~v~g-~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~ 276 (688)
.. ... +....++.++++||||+.... ++......+ ++..+. ...++++++........ ....+..+.
T Consensus 737 ~~-~e~---lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~~~~~~---k~~il~el~-- 807 (1147)
T PRK10689 737 RH-KER---IKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVV---REAILREIL-- 807 (1147)
T ss_pred hH-HHH---HHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEecCcHHH---HHHHHHHHh--
Confidence 21 222 333345789999999985433 333333233 333322 22355554433211111 111122222
Q ss_pred CCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccc
Q 005605 277 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAE 356 (688)
Q Consensus 277 ~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae 356 (688)
..|+++||+|+.+.++.+++.|.+.. +++.+..+||+|++++|.+++..|++| +.+|||||+++|
T Consensus 808 -r~gqv~vf~n~i~~ie~la~~L~~~~-------p~~~v~~lHG~m~q~eRe~im~~Fr~G-------k~~VLVaTdIie 872 (1147)
T PRK10689 808 -RGGQVYYLYNDVENIQKAAERLAELV-------PEARIAIGHGQMRERELERVMNDFHHQ-------RFNVLVCTTIIE 872 (1147)
T ss_pred -cCCeEEEEECCHHHHHHHHHHHHHhC-------CCCcEEEEeCCCCHHHHHHHHHHHHhc-------CCCEEEECchhh
Confidence 35799999999999999999998753 467899999999999999999999999 899999999999
Q ss_pred cCcccCCeEEEE-----cCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccch
Q 005605 357 TSLTIDGIVYVI-----DPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTE 418 (688)
Q Consensus 357 ~gi~i~~V~~VI-----d~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~ 418 (688)
+|||||+|++|| ++|+ ++|.||+|||||. +.|.||.++..
T Consensus 873 rGIDIP~v~~VIi~~ad~fgl----------------------aq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 873 TGIDIPTANTIIIERADHFGL----------------------AQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred cccccccCCEEEEecCCCCCH----------------------HHHHHHhhccCCCCCceEEEEEeCC
Confidence 999999999999 4454 4699999999999 89999988864
No 63
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.96 E-value=9e-29 Score=285.49 Aligned_cols=312 Identities=16% Similarity=0.208 Sum_probs=211.8
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHhcC------CEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhh
Q 005605 55 YYEILEKRKSLPVWQQKEEFLQVLKAN------QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVA 128 (688)
Q Consensus 55 ~~~~l~~~~~lp~~~~q~~ii~~i~~g------~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~ 128 (688)
+.+.+...--..+++.|+++++.|..+ .+++++|+||||||..+..+++.... . ..+.++++||+.++.|
T Consensus 250 ~~~~~~~~l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~-~---g~q~lilaPT~~LA~Q 325 (681)
T PRK10917 250 LLKKFLASLPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE-A---GYQAALMAPTEILAEQ 325 (681)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH-c---CCeEEEEeccHHHHHH
Confidence 333333333336899999999999887 37899999999999988877765431 1 1346677777777776
Q ss_pred hccHHHHHHHhhcccccceeceeeeec------ccccccccccccCHHHHHHHHhccccccCCcEEeecccCcChhhHHH
Q 005605 129 AMSVSRRVAEEMDVTIGEEVGYSIRFE------DCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDV 202 (688)
Q Consensus 129 ~~~v~~~v~~~~~~~~~~~vg~~~~~~------~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEaher~~~~d~ 202 (688)
.....+.+....+..++...|.....+ ........|.+.|++.+.. ...+.+++++|+||+|. .....
T Consensus 326 ~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~v~~~~l~lvVIDE~Hr--fg~~q 399 (681)
T PRK10917 326 HYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD----DVEFHNLGLVIIDEQHR--FGVEQ 399 (681)
T ss_pred HHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc----cchhcccceEEEechhh--hhHHH
Confidence 666666666655666665556432111 1112246677889987643 22378999999999995 22222
Q ss_pred HHHHHHHHHhcCCCcEEEEecccccHHHHH-chhcCCCeeee---CCcccccceeecCCCchhHHHHHHHHHHHHHhcCC
Q 005605 203 LFGLLKEVLKNRPDLKLVVMSATLEAEKFQ-GYFYGAPLMKV---PGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEP 278 (688)
Q Consensus 203 ll~~l~~i~~~~~~~~vil~SAT~~~~~~~-~~~~~~p~~~v---~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~ 278 (688)
.. .+.......++++||||.....++ ..++...+..+ +....|+...+......+ ..+..+.... ..
T Consensus 400 -r~---~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~---~~~~~i~~~~--~~ 470 (681)
T PRK10917 400 -RL---ALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPGRKPITTVVIPDSRRD---EVYERIREEI--AK 470 (681)
T ss_pred -HH---HHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCCCCCcEEEEeCcccHH---HHHHHHHHHH--Hc
Confidence 12 222223357899999998655443 22333222222 222345666665544332 2333333333 34
Q ss_pred CCCEEEecCcHH--------HHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEE
Q 005605 279 SGDILVFLTGEE--------EIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVV 350 (688)
Q Consensus 279 ~g~iLVFl~~~~--------~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlv 350 (688)
..+++||||..+ .++.+++.|.+.+ +++.+..+||+|++++|+.+++.|++| ..+|||
T Consensus 471 g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~-------~~~~v~~lHG~m~~~eR~~i~~~F~~g-------~~~ILV 536 (681)
T PRK10917 471 GRQAYVVCPLIEESEKLDLQSAEETYEELQEAF-------PELRVGLLHGRMKPAEKDAVMAAFKAG-------EIDILV 536 (681)
T ss_pred CCcEEEEEcccccccchhHHHHHHHHHHHHHHC-------CCCcEEEEeCCCCHHHHHHHHHHHHcC-------CCCEEE
Confidence 568999999643 4555666666532 357899999999999999999999999 889999
Q ss_pred ecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeec-chhhHHhhccccCCC-CCceEEEccc
Q 005605 351 STNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPI-SKASAHQRSGRAGRT-QPGKCFRLYT 417 (688)
Q Consensus 351 aTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~-s~~~~~qR~GRaGR~-~~G~~~~l~t 417 (688)
||+++|+|||+|++++||+++. |. +.+++.||+|||||. .+|.||.+++
T Consensus 537 aT~vie~GiDip~v~~VIi~~~------------------~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 537 ATTVIEVGVDVPNATVMVIENA------------------ERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred ECcceeeCcccCCCcEEEEeCC------------------CCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 9999999999999999998776 32 457888999999999 7999999996
No 64
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.96 E-value=1.7e-28 Score=281.49 Aligned_cols=315 Identities=16% Similarity=0.187 Sum_probs=208.2
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHhcC------CEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchh
Q 005605 54 RYYEILEKRKSLPVWQQKEEFLQVLKAN------QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRV 127 (688)
Q Consensus 54 ~~~~~l~~~~~lp~~~~q~~ii~~i~~g------~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~ 127 (688)
.+.++++..++ .+++.|+++++.|..+ .+.+++|+||||||..+..+++.... . ..+.++++||..+..
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~-~---g~qvlilaPT~~LA~ 298 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE-A---GYQVALMAPTEILAE 298 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH-c---CCcEEEECCHHHHHH
Confidence 34556666666 6789999999998776 25789999999999988777665431 1 134566677666666
Q ss_pred hhccHHHHHHHhhcccccceeceeeeec------ccccccccccccCHHHHHHHHhccccccCCcEEeecccCcChhhHH
Q 005605 128 AAMSVSRRVAEEMDVTIGEEVGYSIRFE------DCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATD 201 (688)
Q Consensus 128 ~~~~v~~~v~~~~~~~~~~~vg~~~~~~------~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEaher~~~~d 201 (688)
|....+..+....+.++....|.....+ ........+.+.|++.+.. ...+.+++++|+||+|. ...+
T Consensus 299 Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~----~~~~~~l~lvVIDEaH~--fg~~ 372 (630)
T TIGR00643 299 QHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE----KVEFKRLALVIIDEQHR--FGVE 372 (630)
T ss_pred HHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc----cccccccceEEEechhh--ccHH
Confidence 6555555555544555555555322111 1112234677889987653 23478999999999995 2222
Q ss_pred HHHHHHHHHHhcCCCcEEEEecccccHHHHHc-hhcCCCee---eeCCcccccceeecCCCchhHHHHHHHHHHHHHhcC
Q 005605 202 VLFGLLKEVLKNRPDLKLVVMSATLEAEKFQG-YFYGAPLM---KVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCE 277 (688)
Q Consensus 202 ~ll~~l~~i~~~~~~~~vil~SAT~~~~~~~~-~~~~~p~~---~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~ 277 (688)
... .+..........++++||||.....++. .++...+. ..+....|+..++...... ......+.... .
T Consensus 373 qr~-~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r~~i~~~~~~~~~~---~~~~~~i~~~l--~ 446 (630)
T TIGR00643 373 QRK-KLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGRKPITTVLIKHDEK---DIVYEFIEEEI--A 446 (630)
T ss_pred HHH-HHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCCCceEEEEeCcchH---HHHHHHHHHHH--H
Confidence 211 1222111112568999999985544332 12221111 1222234666665544322 22333333222 2
Q ss_pred CCCCEEEecCcHH--------HHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEE
Q 005605 278 PSGDILVFLTGEE--------EIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIV 349 (688)
Q Consensus 278 ~~g~iLVFl~~~~--------~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvl 349 (688)
..++++||+|..+ .++.+++.|.+.+ +++.+..+||+|++++|..+++.|++| ..+||
T Consensus 447 ~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~-------~~~~v~~lHG~m~~~eR~~i~~~F~~g-------~~~IL 512 (630)
T TIGR00643 447 KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAF-------PKYNVGLLHGRMKSDEKEAVMEEFREG-------EVDIL 512 (630)
T ss_pred hCCcEEEEEccccccccchHHHHHHHHHHHHhhC-------CCCcEEEEeCCCCHHHHHHHHHHHHcC-------CCCEE
Confidence 3568999999763 4555666665432 468899999999999999999999999 89999
Q ss_pred EecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeee-cchhhHHhhccccCCC-CCceEEEccc
Q 005605 350 VSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSP-ISKASAHQRSGRAGRT-QPGKCFRLYT 417 (688)
Q Consensus 350 vaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p-~s~~~~~qR~GRaGR~-~~G~~~~l~t 417 (688)
|||+++|+|||+|++++||.++. | .+.+++.||+|||||. .+|.||.++.
T Consensus 513 VaT~vie~GvDiP~v~~VIi~~~------------------~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 513 VATTVIEVGVDVPNATVMVIEDA------------------ERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred EECceeecCcccCCCcEEEEeCC------------------CcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 99999999999999999998765 3 2567899999999999 8999999983
No 65
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.95 E-value=8e-28 Score=259.62 Aligned_cols=292 Identities=17% Similarity=0.215 Sum_probs=181.1
Q ss_pred EEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhcccccceeceee------e---
Q 005605 83 VIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSI------R--- 153 (688)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~------~--- 153 (688)
+++|.||||||||+++..+++.... ... ...+++..|++..+.+.++++....+..++...|... .
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~--~~~---~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~ 75 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIK--SQK---ADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDS 75 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHh--hCC---CCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCc
Confidence 4788999999999999988875431 111 1234555577777777777777655433321111100 0
Q ss_pred --ecc---------cccccccccccCHHHHHHHHhccc-------cccCCcEEeecccCcChhh-HHHHHHHHHHHHhcC
Q 005605 154 --FED---------CSSARTVLKYLTDGMLLREAMTDP-------LLERYKVIVLDEAHERTLA-TDVLFGLLKEVLKNR 214 (688)
Q Consensus 154 --~~~---------~~~~~~~i~~lT~G~l~~~~~~~~-------ll~~~~~lIlDEaher~~~-~d~ll~~l~~i~~~~ 214 (688)
.+. .......+.++|++++...+.... .....+++|+||+|.-... .+.+..+++.+. .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~--~ 153 (358)
T TIGR01587 76 EEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLK--D 153 (358)
T ss_pred hhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHH--H
Confidence 000 001234577899999987766511 1223489999999953322 234555555544 2
Q ss_pred CCcEEEEecccccHHHHHchhcCCCeeeeCCc--ccc---c-ceeec--CCCchhHHHHHHHHHHHHHhcCCCCCEEEec
Q 005605 215 PDLKLVVMSATLEAEKFQGYFYGAPLMKVPGR--LHP---V-EIFYT--QEPERDYLEAAIRTVVQIHMCEPSGDILVFL 286 (688)
Q Consensus 215 ~~~~vil~SAT~~~~~~~~~~~~~p~~~v~g~--~~~---v-~~~~~--~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl 286 (688)
.+.++++||||++ +.+.+++........... ..+ . .+.+. ..........+ ..+.+.. ..++++|||+
T Consensus 154 ~~~~~i~~SATlp-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~~--~~~~~~lVf~ 229 (358)
T TIGR01587 154 NDVPILLMSATLP-KFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSL-ERLLEFI--KKGGKIAIIV 229 (358)
T ss_pred cCCCEEEEecCch-HHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHHH-HHHHHHh--hCCCeEEEEE
Confidence 3789999999996 334444432211111100 000 1 11111 11111111111 2222222 3467999999
Q ss_pred CcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcc----cCCCCCCCCCCCCCceEEEEecCccccCcccC
Q 005605 287 TGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKI----FEPAPPPSKEGGPPGRKIVVSTNIAETSLTID 362 (688)
Q Consensus 287 ~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~----~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~ 362 (688)
+++++++.+++.|.+.. ....+..+||++++.+|.+. ++.|+.+ ..+||||||++|+||||+
T Consensus 230 ~t~~~~~~~~~~L~~~~-------~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~-------~~~ilvaT~~~~~GiDi~ 295 (358)
T TIGR01587 230 NTVDRAQEFYQQLKENA-------PEEEIMLLHSRFTEKDRAKKEAELLEEMKKN-------EKFVIVATQVIEASLDIS 295 (358)
T ss_pred CCHHHHHHHHHHHHhhc-------CCCeEEEEECCCCHHHHHHHHHHHHHHhcCC-------CCeEEEECcchhceeccC
Confidence 99999999999998752 23579999999999999764 8889988 789999999999999996
Q ss_pred CeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCCC--Cc---eEEEccchhh
Q 005605 363 GIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ--PG---KCFRLYTEKS 420 (688)
Q Consensus 363 ~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~~--~G---~~~~l~t~~~ 420 (688)
+++||++.. +.++|+||+||+||.+ .| .+|-++...+
T Consensus 296 -~~~vi~~~~--------------------~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 296 -ADVMITELA--------------------PIDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred -CCEEEEcCC--------------------CHHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 777776443 4679999999999972 23 6777766544
No 66
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.95 E-value=5.4e-28 Score=289.62 Aligned_cols=298 Identities=18% Similarity=0.191 Sum_probs=190.6
Q ss_pred EEeCCCCChhcchhHHHhcCccCCCc-------cccCceEEEEcCCchhhhccHHHHHHHh---------------hccc
Q 005605 86 LVGETGSGKTTQIPQFVLEGVDIETP-------DRRRKMMIACTQPRRVAAMSVSRRVAEE---------------MDVT 143 (688)
Q Consensus 86 i~g~TGSGKTt~~~~~ll~~~~~~~~-------~~~~~~~i~~t~p~~~~~~~v~~~v~~~---------------~~~~ 143 (688)
|++|||||||.++.+++++.. +... ....++.+++..|++..+.++.+++... .+..
T Consensus 1 V~APTGSGKTLAA~LpaL~~L-l~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~ 79 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRL-FREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLR 79 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHH-HhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceE
Confidence 479999999999998877664 2110 0011233444455565555665555321 1223
Q ss_pred ccceeceeeeecccc--cccccccccCHHHHHHHHhcc--ccccCCcEEeecccCcChhhHH---HHHHHHHHHHhcC-C
Q 005605 144 IGEEVGYSIRFEDCS--SARTVLKYLTDGMLLREAMTD--PLLERYKVIVLDEAHERTLATD---VLFGLLKEVLKNR-P 215 (688)
Q Consensus 144 ~~~~vg~~~~~~~~~--~~~~~i~~lT~G~l~~~~~~~--~ll~~~~~lIlDEaher~~~~d---~ll~~l~~i~~~~-~ 215 (688)
++...|.....+... .....|.++||+.+..++..+ ..+.++++||+||+|+ ....+ .+...+.++.... .
T Consensus 80 V~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~-L~g~kRG~~Lel~LeRL~~l~~~ 158 (1490)
T PRK09751 80 VGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHA-VAGSKRGAHLALSLERLDALLHT 158 (1490)
T ss_pred EEEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHH-hcccccccHHHHHHHHHHHhCCC
Confidence 333333222111111 123578889999998876543 3599999999999995 33321 2333444444332 3
Q ss_pred CcEEEEecccc-cHHHHHchhcCC-CeeeeC-C--cccccceeecCCCchhH----------------HH----HHHHHH
Q 005605 216 DLKLVVMSATL-EAEKFQGYFYGA-PLMKVP-G--RLHPVEIFYTQEPERDY----------------LE----AAIRTV 270 (688)
Q Consensus 216 ~~~vil~SAT~-~~~~~~~~~~~~-p~~~v~-g--~~~~v~~~~~~~~~~~~----------------~~----~~~~~l 270 (688)
+.|+|.+|||+ +.+.+++|+.+. |+..+. . +..++++.. +...... .. .....+
T Consensus 159 ~~QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~v-p~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 159 SAQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVV-PVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred CCeEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEEE-ecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 68999999999 678889988653 443332 1 122233221 1111000 00 011112
Q ss_pred HHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhc-----------------C-------CCCCCeEEEEecCCCCHHH
Q 005605 271 VQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNM-----------------G-------DQVGPVKVVPLYSTLPPAM 326 (688)
Q Consensus 271 ~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~-----------------~-------~~~~~~~v~~lh~~l~~~~ 326 (688)
+... ...+++|||++|+..++.++..|.+..... . .....+.+..+||+|++++
T Consensus 238 l~~i--~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkee 315 (1490)
T PRK09751 238 LDEV--LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQ 315 (1490)
T ss_pred HHHH--hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHH
Confidence 2222 235689999999999999999997643110 0 0001234778999999999
Q ss_pred hhcccCCCCCCCCCCCCCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCC
Q 005605 327 QQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGR 406 (688)
Q Consensus 327 r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR 406 (688)
|..+++.|++| ..++||||+.+|+||||++|++||++|. |.|.++|+||+|||||
T Consensus 316 R~~IE~~fK~G-------~LrvLVATssLELGIDIg~VDlVIq~gs------------------P~sVas~LQRiGRAGR 370 (1490)
T PRK09751 316 RAITEQALKSG-------ELRCVVATSSLELGIDMGAVDLVIQVAT------------------PLSVASGLQRIGRAGH 370 (1490)
T ss_pred HHHHHHHHHhC-------CceEEEeCcHHHccCCcccCCEEEEeCC------------------CCCHHHHHHHhCCCCC
Confidence 99999999999 8999999999999999999999999998 9999999999999999
Q ss_pred CCC--ceEE
Q 005605 407 TQP--GKCF 413 (688)
Q Consensus 407 ~~~--G~~~ 413 (688)
... +.++
T Consensus 371 ~~gg~s~gl 379 (1490)
T PRK09751 371 QVGGVSKGL 379 (1490)
T ss_pred CCCCccEEE
Confidence 733 3444
No 67
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.95 E-value=1.3e-26 Score=265.71 Aligned_cols=519 Identities=20% Similarity=0.242 Sum_probs=322.0
Q ss_pred CCCCChHHHHHHHHhcCCCChHHHHHHHHH-HhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCch
Q 005605 48 GKPYSQRYYEILEKRKSLPVWQQKEEFLQV-LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRR 126 (688)
Q Consensus 48 ~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~-i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~ 126 (688)
...+.+.+.+.++..++-..++.|++.+.. +.+|++++|++|||||||......++.... .. +..++..-|++
T Consensus 13 ~~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~-~~-----~~k~vYivPlk 86 (766)
T COG1204 13 KVKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLL-EG-----GGKVVYIVPLK 86 (766)
T ss_pred cccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHH-hc-----CCcEEEEeChH
Confidence 345778888888888886777766666655 566799999999999999988777766541 11 12355556777
Q ss_pred hhhccHHHHHH--HhhcccccceeceeeeecccccccccccccCHHHHHHHHhcccc-ccCCcEEeecccCcChhh-HH-
Q 005605 127 VAAMSVSRRVA--EEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLA-TD- 201 (688)
Q Consensus 127 ~~~~~v~~~v~--~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~l-l~~~~~lIlDEaher~~~-~d- 201 (688)
..+.+.++++. +.+|.+++...|-.. .......++.|.++|+..+--.....+. +.++++||+||+|.-.-. .+
T Consensus 87 ALa~Ek~~~~~~~~~~GirV~~~TgD~~-~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~ 165 (766)
T COG1204 87 ALAEEKYEEFSRLEELGIRVGISTGDYD-LDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGP 165 (766)
T ss_pred HHHHHHHHHhhhHHhcCCEEEEecCCcc-cchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCc
Confidence 77888888887 566777666666321 1112234677888888776555555544 889999999999952222 22
Q ss_pred HHHHHHHHHHhcCCCcEEEEecccc-cHHHHHchhcCCCeeeeCCccc-------ccceeecCC-Cc----hhHHHHHHH
Q 005605 202 VLFGLLKEVLKNRPDLKLVVMSATL-EAEKFQGYFYGAPLMKVPGRLH-------PVEIFYTQE-PE----RDYLEAAIR 268 (688)
Q Consensus 202 ~ll~~l~~i~~~~~~~~vil~SAT~-~~~~~~~~~~~~p~~~v~g~~~-------~v~~~~~~~-~~----~~~~~~~~~ 268 (688)
.+..++.+.....+..+++-+|||+ +.+.+++|++..++ ...-+.. ....++... .. .........
T Consensus 166 ~lE~iv~r~~~~~~~~rivgLSATlpN~~evA~wL~a~~~-~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~ 244 (766)
T COG1204 166 VLESIVARMRRLNELIRIVGLSATLPNAEEVADWLNAKLV-ESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALE 244 (766)
T ss_pred eehhHHHHHHhhCcceEEEEEeeecCCHHHHHHHhCCccc-ccCCCCcccccCCccceEEEEecCccccccccchHHHHH
Confidence 2555666666655568999999999 78999999976554 2111111 111111111 11 011122333
Q ss_pred HHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhc---------CCCCC-------------------CeEEEEecC
Q 005605 269 TVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNM---------GDQVG-------------------PVKVVPLYS 320 (688)
Q Consensus 269 ~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~---------~~~~~-------------------~~~v~~lh~ 320 (688)
.+...+ ...|++|||++++.+....++.+....... ..... ...+..+|+
T Consensus 245 ~v~~~~--~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhA 322 (766)
T COG1204 245 LVLESL--AEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHA 322 (766)
T ss_pred HHHHHH--hcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCcccccc
Confidence 343333 357899999999999999999998532110 00000 123667899
Q ss_pred CCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhh
Q 005605 321 TLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQR 400 (688)
Q Consensus 321 ~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR 400 (688)
+|+.++|+.+.+.|+.| +.|||+||+..+.|+..|.=++|| .| ..+|||..|+ .++++-++.|.
T Consensus 323 GL~~~~R~~vE~~Fr~g-------~ikVlv~TpTLA~GVNLPA~~VII-k~---~~~y~~~~g~-----~~i~~~dv~QM 386 (766)
T COG1204 323 GLPREDRQLVEDAFRKG-------KIKVLVSTPTLAAGVNLPARTVII-KD---TRRYDPKGGI-----VDIPVLDVLQM 386 (766)
T ss_pred CCCHHHHHHHHHHHhcC-------CceEEEechHHhhhcCCcceEEEE-ee---eEEEcCCCCe-----EECchhhHhhc
Confidence 99999999999999999 899999999999999999777777 23 3678884443 39999999999
Q ss_pred ccccCCCC---CceEEEcc-chh--hhcccCCCCCCCcccccC------cHHHHHHHHHcCCCCCcc------c---cCC
Q 005605 401 SGRAGRTQ---PGKCFRLY-TEK--SFNNDLQPQTYPEILRSN------LANTVLTLKKLGIDDLVH------F---DFM 459 (688)
Q Consensus 401 ~GRaGR~~---~G~~~~l~-t~~--~~~~~l~~~~~pei~r~~------l~~~~L~l~~~~~~~~~~------f---~~~ 459 (688)
+|||||.+ -|..+-+- +.+ ++.........||...+. +...++.+.+.| +... | -|.
T Consensus 387 ~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~~~~~e~~~s~l~~~~~~~~~l~~v~~~~--~~v~~~~~~~f~~~t~~ 464 (766)
T COG1204 387 AGRAGRPGYDDYGEAIILATSHDELEYLAELYIQSEPEPIESKLGDELNLRTFLLGVISVG--DAVSWLELTDFYERTFY 464 (766)
T ss_pred cCcCCCCCcCCCCcEEEEecCccchhHHHHHhhccCcchHHHhhcccccchheEEEEEecc--chhhHHHHHHHHHHHHh
Confidence 99999983 45555554 221 222223334445542111 111111111111 1000 0 000
Q ss_pred C------CCcHHHHHHHHHHHHHcC-CccCCC---CcChhhhhcccCCCChhhhhhhhhcCCCCCh-HHHHHHHHHhcCC
Q 005605 460 D------PPAPETLMRALEVLNYLG-ALDDDG---NLTEMGEKMSEFPLDPQMSKMLVESPKYNCS-NEILSISAMLSVP 528 (688)
Q Consensus 460 ~------~P~~~~i~~a~~~L~~lg-ald~~~---~lT~lG~~~~~lpl~p~~~k~ll~~~~~~c~-~~~l~i~a~ls~~ 528 (688)
. --....+.+++..|.+.+ .++... ..|++|+.++.+.++|..++.+......--. ...+.+...++..
T Consensus 465 ~~~~~~~~~~~~~i~~~~~~L~~~~~~~~~~~~~~~ate~g~~~s~~yi~~~sa~~~~~~l~~~~~~~~~~~~l~~is~~ 544 (766)
T COG1204 465 NPQTYGEGMLREEILASLRYLEENGLILDADWEALHATELGKLVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLISLT 544 (766)
T ss_pred hhhhccccchHHHHHHHHHHHHhccceeeccccccchhHHHHHhhhccCCHHHHHHHHHHHHHhccccchHHHhhhhhcC
Confidence 1 113456788899999986 666543 6899999999999999999988765432211 1222233333322
Q ss_pred CCCC-CChHHHHHHHHHHHHhCCCCCcHH-------------HHHH------HHHHHHhcCCChhhHHhhcCCHHHHHHH
Q 005605 529 NCFV-RPREAQKAADEAKARFGHIDGDHL-------------TLLN------VYHAYKQNNEDPSWCYDNFVNHRALKSA 588 (688)
Q Consensus 529 ~~f~-~~~~~~~~~~~~~~~~~~~~sD~~-------------~~l~------~~~~~~~~~~~~~~c~~~~l~~~~l~~~ 588 (688)
+-|. .+...++........+. ..+|.+ .+++ .+..|.........+..+++....+...
T Consensus 545 pd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~wi~~~~~~~i~~~~~~~~~dl~~~ 623 (766)
T COG1204 545 PDLMPIKLRERESSELVLDELE-EQSDYLLGERLDELAVEYNLLLQALKTAARLLDWINEADEDEILNAYGVAPGDLLRI 623 (766)
T ss_pred ccchhhhhhhhhhhhhhHHHHH-hcchHHhhccccccchhhHHHHHHHHHHHHHHHHHHhCcHHHHHHHhCcchhhHHhh
Confidence 2111 11111111111011110 111221 1232 3347887778888999999999999998
Q ss_pred HHHHHHH
Q 005605 589 DNVRQQL 595 (688)
Q Consensus 589 ~~i~~qL 595 (688)
...+.++
T Consensus 624 ~~~a~w~ 630 (766)
T COG1204 624 AETAEWL 630 (766)
T ss_pred cchhhhh
Confidence 8888888
No 68
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.95 E-value=1.1e-26 Score=249.03 Aligned_cols=288 Identities=15% Similarity=0.190 Sum_probs=177.1
Q ss_pred HHHHHHHHHhcCC--EEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhh----ccc
Q 005605 70 QKEEFLQVLKANQ--VIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEM----DVT 143 (688)
Q Consensus 70 ~q~~ii~~i~~g~--~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~----~~~ 143 (688)
+|.++++++.+++ ++++.+|||||||.++..+++... .+.+.++|++.+..+.....+.+...+ +..
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~~-------~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~ 73 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHGE-------NDTIALYPTNALIEDQTEAIKEFVDVFKPERDVN 73 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcC-------CCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 5889999998887 478899999999999888777532 124566666555444333333332221 111
Q ss_pred ccceeceeee----ec----cc-------------ccccccccccCHHHHHHHHhcc----c------cccCCcEEeecc
Q 005605 144 IGEEVGYSIR----FE----DC-------------SSARTVLKYLTDGMLLREAMTD----P------LLERYKVIVLDE 192 (688)
Q Consensus 144 ~~~~vg~~~~----~~----~~-------------~~~~~~i~~lT~G~l~~~~~~~----~------ll~~~~~lIlDE 192 (688)
+....|.... .. .. ........++|+...+..+... . ++.++++||+||
T Consensus 74 v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE 153 (357)
T TIGR03158 74 LLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDE 153 (357)
T ss_pred EEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEec
Confidence 2212221000 00 00 0011333455554444443321 1 368999999999
Q ss_pred cCcChhhHH-HH---HHHHHHHHhcCCCcEEEEecccccHHH---HHch-hcCCCeeeeCCc--cc--------------
Q 005605 193 AHERTLATD-VL---FGLLKEVLKNRPDLKLVVMSATLEAEK---FQGY-FYGAPLMKVPGR--LH-------------- 248 (688)
Q Consensus 193 aher~~~~d-~l---l~~l~~i~~~~~~~~vil~SAT~~~~~---~~~~-~~~~p~~~v~g~--~~-------------- 248 (688)
+|....... .+ +.....+.....+.+++++|||++... +.+. +.+.|+..++|+ .+
T Consensus 154 ~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~ 233 (357)
T TIGR03158 154 FHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQS 233 (357)
T ss_pred ccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccc
Confidence 997543222 11 233332222222579999999996542 2232 235677777776 11
Q ss_pred ------ccceeecCCCc--hhHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecC
Q 005605 249 ------PVEIFYTQEPE--RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYS 320 (688)
Q Consensus 249 ------~v~~~~~~~~~--~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~ 320 (688)
++++.+...+. ...+....+.+.+......++++|||++|+++++.+++.|.+.. .++.+..+||
T Consensus 234 ~~~~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~-------~~~~~~~l~g 306 (357)
T TIGR03158 234 FRPVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQG-------LGDDIGRITG 306 (357)
T ss_pred cceeccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhC-------CCceEEeeec
Confidence 34444443221 12222333444444433456789999999999999999998631 1467889999
Q ss_pred CCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhh
Q 005605 321 TLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQR 400 (688)
Q Consensus 321 ~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR 400 (688)
.+++.+|.++. +..|+||||++|||||||++.+|++ |.+.++|+||
T Consensus 307 ~~~~~~R~~~~-------------~~~iLVaTdv~~rGiDi~~~~vi~~---------------------p~~~~~yiqR 352 (357)
T TIGR03158 307 FAPKKDRERAM-------------QFDILLGTSTVDVGVDFKRDWLIFS---------------------ARDAAAFWQR 352 (357)
T ss_pred CCCHHHHHHhc-------------cCCEEEEecHHhcccCCCCceEEEC---------------------CCCHHHHhhh
Confidence 99999987653 3579999999999999999854443 7789999999
Q ss_pred ccccC
Q 005605 401 SGRAG 405 (688)
Q Consensus 401 ~GRaG 405 (688)
+||||
T Consensus 353 ~GR~g 357 (357)
T TIGR03158 353 LGRLG 357 (357)
T ss_pred cccCC
Confidence 99998
No 69
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=9.7e-27 Score=254.52 Aligned_cols=310 Identities=15% Similarity=0.162 Sum_probs=209.0
Q ss_pred cCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHh--cCccCCCccccCceEEEEcCCchhhhccHHHHHHHhh
Q 005605 63 KSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVL--EGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (688)
Q Consensus 63 ~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll--~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (688)
|+-..-+-|+++|..+.+|++++++-|||.|||..|..|-+ +|. .++|.| +...-....+.+. ..
T Consensus 14 Gy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~~G~---------TLVVSP---LiSLM~DQV~~l~-~~ 80 (590)
T COG0514 14 GYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLLEGL---------TLVVSP---LISLMKDQVDQLE-AA 80 (590)
T ss_pred CccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhcCCC---------EEEECc---hHHHHHHHHHHHH-Hc
Confidence 55556667999999999999999999999999997665543 332 233333 2211111111111 11
Q ss_pred cccccceeceeeee------cccccccccccccCHHHHHHHHhcccc-ccCCcEEeecccCcChhhHHHH---HHHHHHH
Q 005605 141 DVTIGEEVGYSIRF------EDCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLATDVL---FGLLKEV 210 (688)
Q Consensus 141 ~~~~~~~vg~~~~~------~~~~~~~~~i~~lT~G~l~~~~~~~~l-l~~~~~lIlDEaher~~~~d~l---l~~l~~i 210 (688)
|......-...... .......-++.|++|.++..-...+.+ -..+..+++||||.-+.+.+.+ +..+..+
T Consensus 81 Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l 160 (590)
T COG0514 81 GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRL 160 (590)
T ss_pred CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHH
Confidence 11110000000000 001112245677888887654333333 5678899999999866665433 4445555
Q ss_pred HhcCCCcEEEEecccccHHHHH---c-hhcCCCeeeeCCcccccceeecCCCchhHHHHHHHHHHHHHhcCCCCCEEEec
Q 005605 211 LKNRPDLKLVVMSATLEAEKFQ---G-YFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFL 286 (688)
Q Consensus 211 ~~~~~~~~vil~SAT~~~~~~~---~-~~~~~p~~~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl 286 (688)
....|+..++.+|||.+..... . ...+.+.+.+.+...| .++|...+..+-..... .+.. ......+..||||
T Consensus 161 ~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRp-Ni~~~v~~~~~~~~q~~-fi~~-~~~~~~~~GIIYc 237 (590)
T COG0514 161 RAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRP-NLALKVVEKGEPSDQLA-FLAT-VLPQLSKSGIIYC 237 (590)
T ss_pred HhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCc-hhhhhhhhcccHHHHHH-HHHh-hccccCCCeEEEE
Confidence 6667788999999999654322 2 2334444444443322 23333322221111111 2222 2234566789999
Q ss_pred CcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCcccCCeEE
Q 005605 287 TGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVY 366 (688)
Q Consensus 287 ~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~ 366 (688)
.|+.+++.+++.|... ++.+..+||+|+.++|+.+.+.|..+ ..+|+|||+....|||.|||++
T Consensus 238 ~sRk~~E~ia~~L~~~---------g~~a~~YHaGl~~~eR~~~q~~f~~~-------~~~iiVAT~AFGMGIdKpdVRf 301 (590)
T COG0514 238 LTRKKVEELAEWLRKN---------GISAGAYHAGLSNEERERVQQAFLND-------EIKVMVATNAFGMGIDKPDVRF 301 (590)
T ss_pred eeHHhHHHHHHHHHHC---------CCceEEecCCCCHHHHHHHHHHHhcC-------CCcEEEEeccccCccCCCCceE
Confidence 9999999999999874 79999999999999999999999998 8999999999999999999999
Q ss_pred EEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccchhhhc
Q 005605 367 VIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFN 422 (688)
Q Consensus 367 VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~~ 422 (688)
||++++ |.|.++|.|-+|||||. .|-.|+.||+.++..
T Consensus 302 ViH~~l------------------P~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~ 340 (590)
T COG0514 302 VIHYDL------------------PGSIESYYQETGRAGRDGLPAEAILLYSPEDIR 340 (590)
T ss_pred EEEecC------------------CCCHHHHHHHHhhccCCCCcceEEEeeccccHH
Confidence 999999 99999999999999999 899999999988764
No 70
>PRK09401 reverse gyrase; Reviewed
Probab=99.94 E-value=8.3e-27 Score=278.92 Aligned_cols=301 Identities=15% Similarity=0.107 Sum_probs=196.2
Q ss_pred HHHHh-cCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHH
Q 005605 58 ILEKR-KSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRV 136 (688)
Q Consensus 58 ~l~~~-~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (688)
..++. |+ .++++|.+.++.+..|++++++||||||||+.+ .++...... ...+.++++||+++..|+....+.+
T Consensus 72 ~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~-l~~~~~l~~---~g~~alIL~PTreLa~Qi~~~l~~l 146 (1176)
T PRK09401 72 FFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFG-LVMSLYLAK---KGKKSYIIFPTRLLVEQVVEKLEKF 146 (1176)
T ss_pred HHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHH-HHHHHHHHh---cCCeEEEEeccHHHHHHHHHHHHHH
Confidence 34343 45 789999999999999999999999999999743 332221111 1234678888888888888877777
Q ss_pred HHhhcccccceeceeee-----ecc---cccccccccccCHHHHHHHHhccccccCCcEEeecccCcChhh---------
Q 005605 137 AEEMDVTIGEEVGYSIR-----FED---CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLA--------- 199 (688)
Q Consensus 137 ~~~~~~~~~~~vg~~~~-----~~~---~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEaher~~~--------- 199 (688)
+...+..+....|.... .+. .......|.+.|+|++.+.+. .-...++++||+||||. ++.
T Consensus 147 ~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-~l~~~~~~~lVvDEaD~-~L~~~k~id~~l 224 (1176)
T PRK09401 147 GEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-ELPKKKFDFVFVDDVDA-VLKSSKNIDKLL 224 (1176)
T ss_pred hhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-hccccccCEEEEEChHH-hhhcccchhhHH
Confidence 77665554444443210 000 011245788999999998764 21255699999999994 442
Q ss_pred --HHH----HHHHHHHH----------------Hhc-----CCCcEEEEecccccHHHHH-chhcCCCeeeeCC---ccc
Q 005605 200 --TDV----LFGLLKEV----------------LKN-----RPDLKLVVMSATLEAEKFQ-GYFYGAPLMKVPG---RLH 248 (688)
Q Consensus 200 --~d~----ll~~l~~i----------------~~~-----~~~~~vil~SAT~~~~~~~-~~~~~~p~~~v~g---~~~ 248 (688)
.+| +..++..+ .++ ..+.|++++|||++..... ..|...-.+.+.. ...
T Consensus 225 ~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~v~~~~~~~r 304 (1176)
T PRK09401 225 YLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGFEVGSPVFYLR 304 (1176)
T ss_pred HhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceEEecCcccccC
Confidence 111 11112111 110 1157899999999653221 1221111122222 224
Q ss_pred ccceeecCCCchhHHHHHHHHHHHHHhcCCCCCEEEecCcHHH---HHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHH
Q 005605 249 PVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEE---IEDACRKITKEITNMGDQVGPVKVVPLYSTLPPA 325 (688)
Q Consensus 249 ~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~---i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~ 325 (688)
.+.+.|...+ +..+.+.. +.... ++.+|||++++.. ++.+++.|... ++.+..+||+|
T Consensus 305 nI~~~yi~~~--~k~~~L~~----ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~---------gi~v~~~hg~l--- 365 (1176)
T PRK09401 305 NIVDSYIVDE--DSVEKLVE----LVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDL---------GINAELAISGF--- 365 (1176)
T ss_pred CceEEEEEcc--cHHHHHHH----HHHhc-CCCEEEEEecccChHHHHHHHHHHHHC---------CCcEEEEeCcH---
Confidence 5677776554 33332222 22222 3469999999777 99999999874 79999999999
Q ss_pred HhhcccCCCCCCCCCCCCCceEEEEe----cCccccCcccCC-eEEEEcCCcccceeecCCCCcccceeeecchhhHHhh
Q 005605 326 MQQKIFEPAPPPSKEGGPPGRKIVVS----TNIAETSLTIDG-IVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQR 400 (688)
Q Consensus 326 ~r~~~~~~~~~g~~~~~~~~~kvlva----Tniae~gi~i~~-V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR 400 (688)
.+.++.|++| ..+|||| ||+|+||||+|+ |+|||++|+.+.+.- --..+.+.||
T Consensus 366 --~~~l~~F~~G-------~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~------------~~~~~~~~~~ 424 (1176)
T PRK09401 366 --ERKFEKFEEG-------EVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFS------------LEEELAPPFL 424 (1176)
T ss_pred --HHHHHHHHCC-------CCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEe------------ccccccCHHH
Confidence 2235999999 8899999 799999999999 899999999554431 1145778899
Q ss_pred ccccC
Q 005605 401 SGRAG 405 (688)
Q Consensus 401 ~GRaG 405 (688)
.||+-
T Consensus 425 ~~r~~ 429 (1176)
T PRK09401 425 LLRLL 429 (1176)
T ss_pred HHHHH
Confidence 99984
No 71
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=9.8e-26 Score=215.30 Aligned_cols=306 Identities=16% Similarity=0.191 Sum_probs=223.3
Q ss_pred CCCCCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEc
Q 005605 43 INRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACT 122 (688)
Q Consensus 43 ~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t 122 (688)
...|.++-+.|.+..++-..|+..++.+|.+.||..--|-+++.++.+|-|||..|.+..++..+.... ....++++-|
T Consensus 41 ssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g-~vsvlvmcht 119 (387)
T KOG0329|consen 41 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDG-QVSVLVMCHT 119 (387)
T ss_pred ccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCC-eEEEEEEecc
Confidence 457999999999999999999999999999999987788899999999999999998888877633221 1223455667
Q ss_pred CCchhhhccHHHHHHHhhc-ccccceece-eeeecccccc-cccccccCHHHHHHHHhcccc-ccCCcEEeecccCcChh
Q 005605 123 QPRRVAAMSVSRRVAEEMD-VTIGEEVGY-SIRFEDCSSA-RTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTL 198 (688)
Q Consensus 123 ~p~~~~~~~v~~~v~~~~~-~~~~~~vg~-~~~~~~~~~~-~~~i~~lT~G~l~~~~~~~~l-l~~~~~lIlDEaher~~ 198 (688)
++++.|+..-++++++.+. .++..-.|+ .+..+..... -..|.+.|||+++.+...+.+ |.+++++||||+|. ++
T Consensus 120 relafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdk-ml 198 (387)
T KOG0329|consen 120 RELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDK-ML 198 (387)
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHH-HH
Confidence 8888888888889988764 344334443 3332222222 345678899999999988887 99999999999985 34
Q ss_pred hHHHHHHHHHHHHhcCC-CcEEEEeccccc--HHHHHchhcCCCeeee-CC----cccccceeecCCCchhHHHHHHHHH
Q 005605 199 ATDVLFGLLKEVLKNRP-DLKLVVMSATLE--AEKFQGYFYGAPLMKV-PG----RLHPVEIFYTQEPERDYLEAAIRTV 270 (688)
Q Consensus 199 ~~d~ll~~l~~i~~~~~-~~~vil~SAT~~--~~~~~~~~~~~p~~~v-~g----~~~~v~~~~~~~~~~~~~~~~~~~l 270 (688)
..-.+..-+.++.+..| +.|+++||||++ +.-.+..|...|+-.. .. ..|..+++|..-....+-..+.+.+
T Consensus 199 e~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLL 278 (387)
T KOG0329|consen 199 EQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLL 278 (387)
T ss_pred HHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhh
Confidence 43333444455554444 789999999994 4567777777665322 11 2567788887755444333222222
Q ss_pred HHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEE
Q 005605 271 VQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVV 350 (688)
Q Consensus 271 ~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlv 350 (688)
.. -+-.+++||+.+... | + | . +| +|
T Consensus 279 -d~---LeFNQVvIFvKsv~R-------l-----------------------~----------f--~-------kr--~v 303 (387)
T KOG0329|consen 279 -DV---LEFNQVVIFVKSVQR-------L-----------------------S----------F--Q-------KR--LV 303 (387)
T ss_pred -hh---hhhcceeEeeehhhh-------h-----------------------h----------h--h-------hh--hH
Confidence 22 223478999876543 0 0 1 1 34 99
Q ss_pred ecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccchhhhcc
Q 005605 351 STNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFNN 423 (688)
Q Consensus 351 aTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~~~ 423 (688)
|||+..||+||..|..|+|||+ |-+..+|.||+|||||. ..|.++++.+.+....
T Consensus 304 at~lfgrgmdiervNi~~NYdm------------------p~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~ 359 (387)
T KOG0329|consen 304 ATDLFGRGMDIERVNIVFNYDM------------------PEDSDTYLHRVARAGRFGTKGLAITFVSDENDAK 359 (387)
T ss_pred HhhhhccccCcccceeeeccCC------------------CCCchHHHHHhhhhhccccccceeehhcchhhHH
Confidence 9999999999999999999999 99999999999999999 7899999998765544
No 72
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=2.4e-24 Score=240.32 Aligned_cols=123 Identities=20% Similarity=0.174 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCC
Q 005605 261 DYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKE 340 (688)
Q Consensus 261 ~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~ 340 (688)
++...++..+...+. .+.++|||+++.++++.+++.|.+. ++.+..|||.+++.++..+...+..
T Consensus 457 ~K~~aL~~~i~~~~~--~~~pvLIft~t~~~se~L~~~L~~~---------gi~~~~Lhg~~~~rE~~ii~~ag~~---- 521 (656)
T PRK12898 457 AKWAAVAARVRELHA--QGRPVLVGTRSVAASERLSALLREA---------GLPHQVLNAKQDAEEAAIVARAGQR---- 521 (656)
T ss_pred HHHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHC---------CCCEEEeeCCcHHHHHHHHHHcCCC----
Confidence 344444444433332 2457999999999999999999874 7999999999776666555544443
Q ss_pred CCCCceEEEEecCccccCcccC---CeE-----EEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCce
Q 005605 341 GGPPGRKIVVSTNIAETSLTID---GIV-----YVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGK 411 (688)
Q Consensus 341 ~~~~~~kvlvaTniae~gi~i~---~V~-----~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~ 411 (688)
.+|+||||+|+||+||+ +|. |||++++ |.|...|.||+|||||. .+|.
T Consensus 522 -----g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~------------------P~s~r~y~hr~GRTGRqG~~G~ 578 (656)
T PRK12898 522 -----GRITVATNMAGRGTDIKLEPGVAARGGLHVILTER------------------HDSARIDRQLAGRCGRQGDPGS 578 (656)
T ss_pred -----CcEEEEccchhcccCcCCccchhhcCCCEEEEcCC------------------CCCHHHHHHhcccccCCCCCeE
Confidence 46999999999999999 777 9999999 99999999999999999 8999
Q ss_pred EEEccchhhh
Q 005605 412 CFRLYTEKSF 421 (688)
Q Consensus 412 ~~~l~t~~~~ 421 (688)
|+.+++.++.
T Consensus 579 s~~~is~eD~ 588 (656)
T PRK12898 579 YEAILSLEDD 588 (656)
T ss_pred EEEEechhHH
Confidence 9999997553
No 73
>PRK14701 reverse gyrase; Provisional
Probab=99.92 E-value=3.7e-25 Score=270.01 Aligned_cols=325 Identities=14% Similarity=0.106 Sum_probs=203.5
Q ss_pred HHHHHHH-hcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHH
Q 005605 55 YYEILEK-RKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVS 133 (688)
Q Consensus 55 ~~~~l~~-~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~ 133 (688)
+.+.+++ .|+ .++++|.++++.+.+|++++++||||||||+.+..+.+... . ...+.++++||+++..|+....
T Consensus 68 ~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~-~---~g~~aLVl~PTreLa~Qi~~~l 142 (1638)
T PRK14701 68 FEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA-L---KGKKCYIILPTTLLVKQTVEKI 142 (1638)
T ss_pred HHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH-h---cCCeEEEEECHHHHHHHHHHHH
Confidence 3455554 688 68999999999999999999999999999994322222111 0 1134677888888888887777
Q ss_pred HHHHHhhccc--ccceeceeeeecc------cccccccccccCHHHHHHHHhccccccCCcEEeecccCcChhh------
Q 005605 134 RRVAEEMDVT--IGEEVGYSIRFED------CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLA------ 199 (688)
Q Consensus 134 ~~v~~~~~~~--~~~~vg~~~~~~~------~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEaher~~~------ 199 (688)
..++...+.. +....|.....+. .......|.+.|||.+.+..... ...+++++|+||||. ++.
T Consensus 143 ~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~~~~i~~iVVDEAD~-ml~~~knid 220 (1638)
T PRK14701 143 ESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-KHLKFDFIFVDDVDA-FLKASKNID 220 (1638)
T ss_pred HHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-hhCCCCEEEEECcee-ccccccccc
Confidence 7776654322 2222222111111 11123568889999887765432 236799999999994 332
Q ss_pred -----HHHHHHHHH----H------------------H---Hhc-CCCcE-EEEecccccHH-HHHchhcCCCeeeeCCc
Q 005605 200 -----TDVLFGLLK----E------------------V---LKN-RPDLK-LVVMSATLEAE-KFQGYFYGAPLMKVPGR 246 (688)
Q Consensus 200 -----~d~ll~~l~----~------------------i---~~~-~~~~~-vil~SAT~~~~-~~~~~~~~~p~~~v~g~ 246 (688)
.+|.-++.. . + ... .+..+ ++++|||++.. ....+|...-.+.+...
T Consensus 221 ~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l~f~v~~~ 300 (1638)
T PRK14701 221 RSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELLGFEVGSG 300 (1638)
T ss_pred hhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCeEEEecCC
Confidence 233222221 1 1 111 12334 67899999642 33344432222333222
Q ss_pred ---ccccceeecCCCchhHHHHHHHHHHHHHhcCCCCCEEEecCcHHHH---HHHHHHHHHHHhhcCCCCCCeEEEEecC
Q 005605 247 ---LHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEI---EDACRKITKEITNMGDQVGPVKVVPLYS 320 (688)
Q Consensus 247 ---~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i---~~~~~~L~~~~~~~~~~~~~~~v~~lh~ 320 (688)
...+.+.|......+. .. +..+.... ....||||++++.+ +.+++.|.+. ++.+..+||
T Consensus 301 ~~~lr~i~~~yi~~~~~~k-~~----L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~---------Gi~a~~~h~ 365 (1638)
T PRK14701 301 RSALRNIVDVYLNPEKIIK-EH----VRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLED---------GFKIELVSA 365 (1638)
T ss_pred CCCCCCcEEEEEECCHHHH-HH----HHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHC---------CCeEEEecc
Confidence 2345666664433322 22 22333222 34689999998765 7888888874 899999999
Q ss_pred CCCHHHhhcccCCCCCCCCCCCCCceEEEEec----CccccCcccCC-eEEEEcCCccccee----ecCCCCcccceeee
Q 005605 321 TLPPAMQQKIFEPAPPPSKEGGPPGRKIVVST----NIAETSLTIDG-IVYVIDPGFAKQKV----YNPRVRVESLLVSP 391 (688)
Q Consensus 321 ~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaT----niae~gi~i~~-V~~VId~g~~k~~~----~~~~~~~~~l~~~p 391 (688)
+ |..+++.|++| ..+|+||| |+|+||||+|+ |+|||++|+.|.+. |.+.... + +
T Consensus 366 ~-----R~~~l~~F~~G-------~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~--~---~ 428 (1638)
T PRK14701 366 K-----NKKGFDLFEEG-------EIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYR--I---L 428 (1638)
T ss_pred h-----HHHHHHHHHcC-------CCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhh--h---h
Confidence 5 88899999999 89999999 69999999999 99999999966432 2211110 0 0
Q ss_pred cchhhHHhhccccCCC-CCceEEEccchh
Q 005605 392 ISKASAHQRSGRAGRT-QPGKCFRLYTEK 419 (688)
Q Consensus 392 ~s~~~~~qR~GRaGR~-~~G~~~~l~t~~ 419 (688)
. .....++.||+||. .++.|+..+..+
T Consensus 429 ~-~~~~~~~~~~a~~~g~~~~~~~~~~~~ 456 (1638)
T PRK14701 429 G-LLSEILKIEEELKEGIPIEGVLDVFPE 456 (1638)
T ss_pred c-chHHHHHhhhhcccCCcchhHHHhHHH
Confidence 0 22344567999998 677886554443
No 74
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.92 E-value=1.4e-25 Score=228.13 Aligned_cols=227 Identities=21% Similarity=0.251 Sum_probs=159.8
Q ss_pred ccccccccCHHHHHHHHhcccc-ccCCcEEeecccCcCh--hhHHHHHHHHHHHHhcC---CCcEEEEecccc---cHHH
Q 005605 160 ARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERT--LATDVLFGLLKEVLKNR---PDLKLVVMSATL---EAEK 230 (688)
Q Consensus 160 ~~~~i~~lT~G~l~~~~~~~~l-l~~~~~lIlDEaher~--~~~d~ll~~l~~i~~~~---~~~~vil~SAT~---~~~~ 230 (688)
..+.|.+-|+|++...+....+ +.++.++++||+|.-. ...|++..+...|.+.. ..++.++.|||+ ++..
T Consensus 338 ~g~~ivvGtpgRl~~~is~g~~~lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk 417 (725)
T KOG0349|consen 338 DGTHIVVGTPGRLLQPISKGLVTLTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKK 417 (725)
T ss_pred cCceeeecCchhhhhhhhccceeeeeeEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeee
Confidence 3578889999999998776654 8999999999997411 23555555555544322 257899999998 4445
Q ss_pred HHchhcCCCe-eeeCCc-ccccceeecC---CC-------------------c----------hhHHHHHHHHHH-----
Q 005605 231 FQGYFYGAPL-MKVPGR-LHPVEIFYTQ---EP-------------------E----------RDYLEAAIRTVV----- 271 (688)
Q Consensus 231 ~~~~~~~~p~-~~v~g~-~~~v~~~~~~---~~-------------------~----------~~~~~~~~~~l~----- 271 (688)
+.+....-|. +...|. .-|-+++... +| . .+...++..++.
T Consensus 418 ~~ervmhfptwVdLkgeD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v 497 (725)
T KOG0349|consen 418 VGERVMHFPTWVDLKGEDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGV 497 (725)
T ss_pred hhhhhccCceeEecccccccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhh
Confidence 5544333222 111111 0111111100 00 0 000111121110
Q ss_pred HHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEe
Q 005605 272 QIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVS 351 (688)
Q Consensus 272 ~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlva 351 (688)
.......-.+.++||.|+.+++.+.+.+.+.. -..+.++++||+..+++|..-++.|+.+ ..|.++|
T Consensus 498 ~ai~~h~mdkaiifcrtk~dcDnLer~~~qkg------g~~~scvclhgDrkP~Erk~nle~Fkk~-------dvkflic 564 (725)
T KOG0349|consen 498 VAIRRHAMDKAIIFCRTKQDCDNLERMMNQKG------GKHYSCVCLHGDRKPDERKANLESFKKF-------DVKFLIC 564 (725)
T ss_pred hhhhhhccCceEEEEeccccchHHHHHHHHcC------CccceeEEEecCCChhHHHHHHHhhhhc-------CeEEEEE
Confidence 11122334689999999999999999998752 1368999999999999999999999988 8999999
Q ss_pred cCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccc
Q 005605 352 TNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYT 417 (688)
Q Consensus 352 Tniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t 417 (688)
||+|+|||||-++-||||.-+ |.++.+|+||+||.||+ +-|.+++|+.
T Consensus 565 tdvaargldi~g~p~~invtl------------------pd~k~nyvhrigrvgraermglaislva 613 (725)
T KOG0349|consen 565 TDVAARGLDITGLPFMINVTL------------------PDDKTNYVHRIGRVGRAERMGLAISLVA 613 (725)
T ss_pred ehhhhccccccCCceEEEEec------------------CcccchhhhhhhccchhhhcceeEEEee
Confidence 999999999999999999888 99999999999999999 8899999975
No 75
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.92 E-value=2.7e-24 Score=250.11 Aligned_cols=332 Identities=22% Similarity=0.260 Sum_probs=221.7
Q ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccH
Q 005605 53 QRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSV 132 (688)
Q Consensus 53 ~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v 132 (688)
..+...+.++|...+|.||.+.+..+.+|++++|+.+||||||..|..|+++.. +.... .+++.+.||.-+. .+.
T Consensus 57 ~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~-l~~~~-a~AL~lYPtnALa---~DQ 131 (851)
T COG1205 57 ESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHL-LRDPS-ARALLLYPTNALA---NDQ 131 (851)
T ss_pred hHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHH-hhCcC-ccEEEEechhhhH---hhH
Confidence 334677888899999999999999999999999999999999999999999886 33322 2457677766554 444
Q ss_pred HHHHHHh---hcc--cccceeceeeeecc--cccccccccccCHHHHHHHHhccc-----cccCCcEEeecccCc-Chhh
Q 005605 133 SRRVAEE---MDV--TIGEEVGYSIRFED--CSSARTVLKYLTDGMLLREAMTDP-----LLERYKVIVLDEAHE-RTLA 199 (688)
Q Consensus 133 ~~~v~~~---~~~--~~~~~vg~~~~~~~--~~~~~~~i~~lT~G~l~~~~~~~~-----ll~~~~~lIlDEahe-r~~~ 199 (688)
.+++.+. .+. ..+..-|-....+. ......+|.+++|-|+-..++... ++.+.++||+||+|- |...
T Consensus 132 ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~ 211 (851)
T COG1205 132 AERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQ 211 (851)
T ss_pred HHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccc
Confidence 5555443 332 11111121111111 112345666777777766555432 388899999999992 1222
Q ss_pred HHHHHHHHHHH---HhcCC-CcEEEEecccc-cHHHHHchhcCCCeee-eCC--cccccceeecCCC---------chhH
Q 005605 200 TDVLFGLLKEV---LKNRP-DLKLVVMSATL-EAEKFQGYFYGAPLMK-VPG--RLHPVEIFYTQEP---------ERDY 262 (688)
Q Consensus 200 ~d~ll~~l~~i---~~~~~-~~~vil~SAT~-~~~~~~~~~~~~p~~~-v~g--~~~~v~~~~~~~~---------~~~~ 262 (688)
.-.+-.+++++ .+..+ +.|+|.+|||+ +...++.-+.+..... +.+ ....-..++...| ..+.
T Consensus 212 GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~ 291 (851)
T COG1205 212 GSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSA 291 (851)
T ss_pred hhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccch
Confidence 22233344444 33322 78999999999 5655554444444333 433 2222233333333 1122
Q ss_pred HHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCC
Q 005605 263 LEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGG 342 (688)
Q Consensus 263 ~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~ 342 (688)
.......+.... ...-+.|||+.++..++.+.......+...+ ......+..+||++..++|.++...|+.|
T Consensus 292 ~~~~~~~~~~~~--~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~-~~l~~~v~~~~~~~~~~er~~ie~~~~~g----- 363 (851)
T COG1205 292 LAELATLAALLV--RNGIQTLVFFRSRKQVELLYLSPRRRLVREG-GKLLDAVSTYRAGLHREERRRIEAEFKEG----- 363 (851)
T ss_pred HHHHHHHHHHHH--HcCceEEEEEehhhhhhhhhhchhHHHhhcc-hhhhhheeeccccCCHHHHHHHHHHHhcC-----
Confidence 221111111122 2345799999999999999755554433223 22235689999999999999999999999
Q ss_pred CCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeec-chhhHHhhccccCCC-CCceEEEccc
Q 005605 343 PPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPI-SKASAHQRSGRAGRT-QPGKCFRLYT 417 (688)
Q Consensus 343 ~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~-s~~~~~qR~GRaGR~-~~G~~~~l~t 417 (688)
..++++|||.+|-||||.+++.||.+|+ |. |..++.||+|||||. +.+..+-.+.
T Consensus 364 --~~~~~~st~AlelgidiG~ldavi~~g~------------------P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 364 --ELLGVIATNALELGIDIGSLDAVIAYGY------------------PGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred --CccEEecchhhhhceeehhhhhHhhcCC------------------CCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 8999999999999999999999999999 98 999999999999999 5666655544
No 76
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.91 E-value=6.2e-24 Score=222.58 Aligned_cols=318 Identities=19% Similarity=0.210 Sum_probs=209.3
Q ss_pred CCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhccc
Q 005605 64 SLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (688)
Q Consensus 64 ~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (688)
.+.+-.+|..+......+ +++++-|||=|||+....++........ .+.+.++||.|+..|....+.++.......
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~---~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~ 88 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFG---GKVLFLAPTKPLVLQHAEFCRKVTGIPEDE 88 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcC---CeEEEecCCchHHHHHHHHHHHHhCCChhh
Confidence 345566788888776666 6667899999999977766654432222 235677888888877665555444332233
Q ss_pred ccceeceeeeeccc--ccccccccccCHHHHHHHHhcccc-ccCCcEEeecccCcChhhHHHHHHHHHHHHhcCCCcEEE
Q 005605 144 IGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLV 220 (688)
Q Consensus 144 ~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~~~~~~~~l-l~~~~~lIlDEaher~~~~d~ll~~l~~i~~~~~~~~vi 220 (688)
+....|-. +-+.. ...+.++.+.||.....-+.+..+ +.++.++|+|||| |.......-.+.+.+.+...+..++
T Consensus 89 i~~ltGev-~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAH-RAvGnyAYv~Va~~y~~~~k~~~il 166 (542)
T COG1111 89 IAALTGEV-RPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAH-RAVGNYAYVFVAKEYLRSAKNPLIL 166 (542)
T ss_pred eeeecCCC-ChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhh-hccCcchHHHHHHHHHHhccCceEE
Confidence 33444422 11111 124678889999999888877776 9999999999999 5555555556667677766678899
Q ss_pred Eecccc--cHHHHHchhcCCCe--eee--CCc------ccccceeecCCC------------------------------
Q 005605 221 VMSATL--EAEKFQGYFYGAPL--MKV--PGR------LHPVEIFYTQEP------------------------------ 258 (688)
Q Consensus 221 l~SAT~--~~~~~~~~~~~~p~--~~v--~g~------~~~v~~~~~~~~------------------------------ 258 (688)
.+|||. +.+.+..-..+--+ +.+ +.. ...+++.+....
T Consensus 167 gLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~ 246 (542)
T COG1111 167 GLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIE 246 (542)
T ss_pred EEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCcee
Confidence 999998 45555443322111 000 000 011111111100
Q ss_pred ------------------------ch-------------------------------hHH--------------------
Q 005605 259 ------------------------ER-------------------------------DYL-------------------- 263 (688)
Q Consensus 259 ------------------------~~-------------------------------~~~-------------------- 263 (688)
.. .|+
T Consensus 247 ~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~ 326 (542)
T COG1111 247 SSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLA 326 (542)
T ss_pred ccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhc
Confidence 00 000
Q ss_pred ------------------------HHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeE--EE-
Q 005605 264 ------------------------EAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVK--VV- 316 (688)
Q Consensus 264 ------------------------~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~--v~- 316 (688)
+.+...+.....+.+..++|||..-++.++.+.+.|.+.. . ... ++
T Consensus 327 d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~----~---~~~~rFiG 399 (542)
T COG1111 327 DPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIG----I---KARVRFIG 399 (542)
T ss_pred ChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcC----C---cceeEEee
Confidence 0001111112223345689999999999999999998752 1 121 11
Q ss_pred ----EecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeec
Q 005605 317 ----PLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPI 392 (688)
Q Consensus 317 ----~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~ 392 (688)
....||+|.+|..+++.|+.| ..+|||||.|+|-|||||+|++||=| +| -.
T Consensus 400 Qa~r~~~~GMsQkeQ~eiI~~Fr~G-------e~nVLVaTSVgEEGLDIp~vDlVifY--------Ep----------vp 454 (542)
T COG1111 400 QASREGDKGMSQKEQKEIIDQFRKG-------EYNVLVATSVGEEGLDIPEVDLVIFY--------EP----------VP 454 (542)
T ss_pred ccccccccccCHHHHHHHHHHHhcC-------CceEEEEcccccccCCCCcccEEEEe--------cC----------Cc
Confidence 122579999999999999999 89999999999999999999999964 44 45
Q ss_pred chhhHHhhccccCCCCCceEEEccchh
Q 005605 393 SKASAHQRSGRAGRTQPGKCFRLYTEK 419 (688)
Q Consensus 393 s~~~~~qR~GRaGR~~~G~~~~l~t~~ 419 (688)
|.--++||.|||||.++|.+|-|+++.
T Consensus 455 SeIR~IQR~GRTGR~r~Grv~vLvt~g 481 (542)
T COG1111 455 SEIRSIQRKGRTGRKRKGRVVVLVTEG 481 (542)
T ss_pred HHHHHHHhhCccccCCCCeEEEEEecC
Confidence 777899999999999999999999986
No 77
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.91 E-value=1.1e-23 Score=235.71 Aligned_cols=296 Identities=14% Similarity=0.100 Sum_probs=185.1
Q ss_pred CCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhccc
Q 005605 64 SLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (688)
Q Consensus 64 ~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (688)
...+.++|.++++.+..++..++++|||+|||..+....... ... ...+.++++|+.++..|.......+.......
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~--~~~-~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~ 188 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYY--LEN-YEGKVLIIVPTTSLVTQMIDDFVDYRLFPREA 188 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH--Hhc-CCCeEEEEECcHHHHHHHHHHHHHhccccccc
Confidence 357888999999888888888999999999998654322100 011 11135566666665555443333222111111
Q ss_pred ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecccCcChhhHHHHHHHHHHHHhcCCCcEEEEec
Q 005605 144 IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMS 223 (688)
Q Consensus 144 ~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEaher~~~~d~ll~~l~~i~~~~~~~~vil~S 223 (688)
+....|.. .......|.+.|++.+.+.. ...+.++++||+||+|. ... ..+..+++.+ .+..+++.+|
T Consensus 189 ~~~i~~g~-----~~~~~~~I~VaT~qsl~~~~--~~~~~~~~~iIvDEaH~-~~~-~~~~~il~~~---~~~~~~lGLT 256 (501)
T PHA02558 189 MHKIYSGT-----AKDTDAPIVVSTWQSAVKQP--KEWFDQFGMVIVDECHL-FTG-KSLTSIITKL---DNCKFKFGLT 256 (501)
T ss_pred eeEEecCc-----ccCCCCCEEEeeHHHHhhch--hhhccccCEEEEEchhc-ccc-hhHHHHHHhh---hccceEEEEe
Confidence 11111211 11134578889999887643 23578999999999995 332 3344444443 1245789999
Q ss_pred ccccHH---H--HHchhcCCCeeee-------CCccccccee--ecCCCc--------hhH-------------HHHHHH
Q 005605 224 ATLEAE---K--FQGYFYGAPLMKV-------PGRLHPVEIF--YTQEPE--------RDY-------------LEAAIR 268 (688)
Q Consensus 224 AT~~~~---~--~~~~~~~~p~~~v-------~g~~~~v~~~--~~~~~~--------~~~-------------~~~~~~ 268 (688)
||+... . +..+|+.. ...+ .|...+.++. +...+. .++ ......
T Consensus 257 ATp~~~~~~~~~~~~~fG~i-~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~ 335 (501)
T PHA02558 257 GSLRDGKANILQYVGLFGDI-FKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIAN 335 (501)
T ss_pred ccCCCccccHHHHHHhhCCc-eEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHH
Confidence 998321 1 23344321 1111 1111111111 000000 001 001111
Q ss_pred HHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEE
Q 005605 269 TVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKI 348 (688)
Q Consensus 269 ~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kv 348 (688)
.+..+. ..++++|||+...+.++.+++.|.+. +..+..+||++++++|..+++.|+.| ...|
T Consensus 336 ~~~~~~--~~~~~~lV~~~~~~h~~~L~~~L~~~---------g~~v~~i~G~~~~~eR~~i~~~~~~~-------~~~v 397 (501)
T PHA02558 336 LALKLA--KKGENTFVMFKYVEHGKPLYEMLKKV---------YDKVYYVSGEVDTEDRNEMKKIAEGG-------KGII 397 (501)
T ss_pred HHHHHH--hcCCCEEEEEEEHHHHHHHHHHHHHc---------CCCEEEEeCCCCHHHHHHHHHHHhCC-------CCeE
Confidence 121222 34568999999999999999999874 67899999999999999999999887 7789
Q ss_pred EEec-CccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCCCCce
Q 005605 349 VVST-NIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGK 411 (688)
Q Consensus 349 lvaT-niae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~ 411 (688)
|||| +++++|+|+|++++||.... +.|...|+||+||+||..+|+
T Consensus 398 LvaT~~~l~eG~Dip~ld~vIl~~p------------------~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 398 IVASYGVFSTGISIKNLHHVIFAHP------------------SKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred EEEEcceeccccccccccEEEEecC------------------CcchhhhhhhhhccccCCCCC
Confidence 9998 99999999999999997555 778999999999999996553
No 78
>PRK13766 Hef nuclease; Provisional
Probab=99.91 E-value=9.6e-24 Score=249.80 Aligned_cols=317 Identities=18% Similarity=0.189 Sum_probs=199.4
Q ss_pred cCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhcc
Q 005605 63 KSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (688)
Q Consensus 63 ~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (688)
+.+++..+|.++...+..+ +++++.|||+|||.++..++.... .. ...+.++++|+.++..|.. +.+.+..+.
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l--~~-~~~~vLvl~Pt~~L~~Q~~---~~~~~~~~~ 84 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERL--HK-KGGKVLILAPTKPLVEQHA---EFFRKFLNI 84 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHH--Hh-CCCeEEEEeCcHHHHHHHH---HHHHHHhCC
Confidence 3456788899999888777 677899999999987665554332 11 1123455566655555543 334333332
Q ss_pred ---cccceeceeeeecc-cccccccccccCHHHHHHHHhcccc-ccCCcEEeecccCcChhhHHHHHHHHHHHHhcCCCc
Q 005605 143 ---TIGEEVGYSIRFED-CSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDL 217 (688)
Q Consensus 143 ---~~~~~vg~~~~~~~-~~~~~~~i~~lT~G~l~~~~~~~~l-l~~~~~lIlDEaher~~~~d~ll~~l~~i~~~~~~~ 217 (688)
.+....|.....+. ....+..+.++|++.+...+....+ +.++++||+||||. .........+.+.+....+..
T Consensus 85 ~~~~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~-~~~~~~~~~i~~~~~~~~~~~ 163 (773)
T PRK13766 85 PEEKIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHR-AVGNYAYVYIAERYHEDAKNP 163 (773)
T ss_pred CCceEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCcc-ccccccHHHHHHHHHhcCCCC
Confidence 22222221110000 0112456888999999887766554 88999999999994 333222223344444444466
Q ss_pred EEEEecccc--cHHHHHchhcC----------------------CCeee--eC--------------------------C
Q 005605 218 KLVVMSATL--EAEKFQGYFYG----------------------APLMK--VP--------------------------G 245 (688)
Q Consensus 218 ~vil~SAT~--~~~~~~~~~~~----------------------~p~~~--v~--------------------------g 245 (688)
.++.+|||. +.+.+.....+ ..+.. ++ |
T Consensus 164 ~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~ 243 (773)
T PRK13766 164 LVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELG 243 (773)
T ss_pred EEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 799999997 22222111110 00000 00 0
Q ss_pred cccccc----ee-----------ec-CCC---------------------------------------------------
Q 005605 246 RLHPVE----IF-----------YT-QEP--------------------------------------------------- 258 (688)
Q Consensus 246 ~~~~v~----~~-----------~~-~~~--------------------------------------------------- 258 (688)
...+.. .. .+ ...
T Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~ 323 (773)
T PRK13766 244 VIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKAS 323 (773)
T ss_pred CcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHH
Confidence 000000 00 00 000
Q ss_pred ---------------------chhHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEE
Q 005605 259 ---------------------ERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVP 317 (688)
Q Consensus 259 ---------------------~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~ 317 (688)
...++..+.+.+..+....+++++|||+++++.++.+++.|... ++.+..
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~---------~~~~~~ 394 (773)
T PRK13766 324 KRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKE---------GIKAVR 394 (773)
T ss_pred HHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhC---------CCceEE
Confidence 00011111122222222246789999999999999999999653 567778
Q ss_pred ecCC--------CCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCccccee
Q 005605 318 LYST--------LPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLV 389 (688)
Q Consensus 318 lh~~--------l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~ 389 (688)
+||. +++.+|.++++.|+.| ..+|+|||+++++|+|+|++++||+|+.
T Consensus 395 ~~g~~~~~~~~~~~~~~r~~~~~~F~~g-------~~~vLvaT~~~~eGldi~~~~~VI~yd~----------------- 450 (773)
T PRK13766 395 FVGQASKDGDKGMSQKEQIEILDKFRAG-------EFNVLVSTSVAEEGLDIPSVDLVIFYEP----------------- 450 (773)
T ss_pred EEccccccccCCCCHHHHHHHHHHHHcC-------CCCEEEECChhhcCCCcccCCEEEEeCC-----------------
Confidence 8876 9999999999999998 7899999999999999999999999877
Q ss_pred eecchhhHHhhccccCCCCCceEEEccchhhh
Q 005605 390 SPISKASAHQRSGRAGRTQPGKCFRLYTEKSF 421 (688)
Q Consensus 390 ~p~s~~~~~qR~GRaGR~~~G~~~~l~t~~~~ 421 (688)
|.+...|+||+||+||.++|.+|.|++++..
T Consensus 451 -~~s~~r~iQR~GR~gR~~~~~v~~l~~~~t~ 481 (773)
T PRK13766 451 -VPSEIRSIQRKGRTGRQEEGRVVVLIAKGTR 481 (773)
T ss_pred -CCCHHHHHHHhcccCcCCCCEEEEEEeCCCh
Confidence 8899999999999999999999999986543
No 79
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.91 E-value=1e-23 Score=252.79 Aligned_cols=289 Identities=18% Similarity=0.162 Sum_probs=185.1
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHH
Q 005605 55 YYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSR 134 (688)
Q Consensus 55 ~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~ 134 (688)
+.+...+.....++++|...++.+..|++++++||||||||+.+ .++...... ...+.++++||+++..|....+.
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~-l~~~~~l~~---~g~~vLIL~PTreLa~Qi~~~l~ 142 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFG-LAMSLFLAK---KGKRCYIILPTTLLVIQVAEKIS 142 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHHHHHh---cCCeEEEEeCHHHHHHHHHHHHH
Confidence 33444554555889999999999999999999999999999843 333322111 12346778888888888877777
Q ss_pred HHHHhhcccccc---eeceeeeecc------cccccccccccCHHHHHHHHhccccccCCcEEeecccCcChhh------
Q 005605 135 RVAEEMDVTIGE---EVGYSIRFED------CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLA------ 199 (688)
Q Consensus 135 ~v~~~~~~~~~~---~vg~~~~~~~------~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEaher~~~------ 199 (688)
.++...+..... ..|.....+. .......|.+.|+|++.+.+.. +..+++++|+||||. ++.
T Consensus 143 ~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--l~~~~~~iVvDEaD~-~L~~~k~vd 219 (1171)
T TIGR01054 143 SLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE--LGPKFDFIFVDDVDA-LLKASKNVD 219 (1171)
T ss_pred HHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH--hcCCCCEEEEeChHh-hhhccccHH
Confidence 777665543221 2222111010 0112356888999999876543 212899999999994 443
Q ss_pred -----HHHHHHHHHHH----------------------Hhc-CCCc--EEEEecccc-cHHHHHchhcCCCeeeeCCc--
Q 005605 200 -----TDVLFGLLKEV----------------------LKN-RPDL--KLVVMSATL-EAEKFQGYFYGAPLMKVPGR-- 246 (688)
Q Consensus 200 -----~d~ll~~l~~i----------------------~~~-~~~~--~vil~SAT~-~~~~~~~~~~~~p~~~v~g~-- 246 (688)
++|.-+.+..+ .+. .++. +++++|||. +...-..+|...-.+.+...
T Consensus 220 ~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll~~~v~~~~~ 299 (1171)
T TIGR01054 220 KLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELLGFEVGGGSD 299 (1171)
T ss_pred HHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccccceEecCccc
Confidence 11111111111 111 1122 367799995 32211122222112333222
Q ss_pred -ccccceeecCCCchhHHHHHHHHHHHHHhcCCCCCEEEecCcH---HHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCC
Q 005605 247 -LHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGE---EEIEDACRKITKEITNMGDQVGPVKVVPLYSTL 322 (688)
Q Consensus 247 -~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~---~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l 322 (688)
...+.+.|..... ....+. .+.... .+.+|||++++ +.++.+++.|.+. ++.+..+||++
T Consensus 300 ~~r~I~~~~~~~~~--~~~~L~----~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~---------g~~a~~lhg~~ 363 (1171)
T TIGR01054 300 TLRNVVDVYVEDED--LKETLL----EIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENH---------GVKAVAYHATK 363 (1171)
T ss_pred cccceEEEEEeccc--HHHHHH----HHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhC---------CceEEEEeCCC
Confidence 2356667764432 122222 222222 34689999999 9999999999874 79999999999
Q ss_pred CHHHhhcccCCCCCCCCCCCCCceEEEEe----cCccccCcccCC-eEEEEcCCccccee
Q 005605 323 PPAMQQKIFEPAPPPSKEGGPPGRKIVVS----TNIAETSLTIDG-IVYVIDPGFAKQKV 377 (688)
Q Consensus 323 ~~~~r~~~~~~~~~g~~~~~~~~~kvlva----Tniae~gi~i~~-V~~VId~g~~k~~~ 377 (688)
++ .+++.|++| +.+|||| ||+|+||||||+ |+|||++|+.+.+.
T Consensus 364 ~~----~~l~~Fr~G-------~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~~~ 412 (1171)
T TIGR01054 364 PK----EDYEKFAEG-------EIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKFKV 412 (1171)
T ss_pred CH----HHHHHHHcC-------CCCEEEEeccccCcccccCCCCccccEEEEECCCCEEE
Confidence 73 578999999 8999999 599999999999 89999999998864
No 80
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=3.2e-23 Score=236.08 Aligned_cols=314 Identities=19% Similarity=0.190 Sum_probs=201.0
Q ss_pred CCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhccc
Q 005605 64 SLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (688)
Q Consensus 64 ~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (688)
-+.++++|......+.+|. ++...||+|||..+..+++... +.. .+..++.|+..++.+.......+.+.++.+
T Consensus 76 g~~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~a-l~G---~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~ 149 (790)
T PRK09200 76 GMRPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNA-LEG---KGVHLITVNDYLAKRDAEEMGQVYEFLGLT 149 (790)
T ss_pred CCCCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHH-HcC---CCeEEEeCCHHHHHHHHHHHHHHHhhcCCe
Confidence 3467888888888888887 7799999999999887776433 111 235567777777777777777778888888
Q ss_pred ccceeceee-eecccccccccccccCHHHHH-HHHhc-------cccccCCcEEeecccCcChhhH--------------
Q 005605 144 IGEEVGYSI-RFEDCSSARTVLKYLTDGMLL-REAMT-------DPLLERYKVIVLDEAHERTLAT-------------- 200 (688)
Q Consensus 144 ~~~~vg~~~-~~~~~~~~~~~i~~lT~G~l~-~~~~~-------~~ll~~~~~lIlDEaher~~~~-------------- 200 (688)
++..+|... ..+........|.+.|+|++. +.+.. ...+.+..++|+||||.-.++.
T Consensus 150 v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~~~ 229 (790)
T PRK09200 150 VGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQ 229 (790)
T ss_pred EEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCCccc
Confidence 877776543 222222235678899999992 22211 1246888999999987321110
Q ss_pred HHHHHHHHHHHhcC---------C-CcEEEEeccccc-HHHH-----------------------Hchhc---------C
Q 005605 201 DVLFGLLKEVLKNR---------P-DLKLVVMSATLE-AEKF-----------------------QGYFY---------G 237 (688)
Q Consensus 201 d~ll~~l~~i~~~~---------~-~~~vil~SAT~~-~~~~-----------------------~~~~~---------~ 237 (688)
..+......+.... + ...+.+..+-.. .+.+ +.++. +
T Consensus 230 ~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV~~ 309 (790)
T PRK09200 230 SNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVYD 309 (790)
T ss_pred cHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEEEEC
Confidence 01222332332211 1 122322221110 1111 11110 1
Q ss_pred CCeeee---CCc-----ccc------------ccee-----------------e--------------------------
Q 005605 238 APLMKV---PGR-----LHP------------VEIF-----------------Y-------------------------- 254 (688)
Q Consensus 238 ~p~~~v---~g~-----~~~------------v~~~-----------------~-------------------------- 254 (688)
..++.| .|+ .++ +++. |
T Consensus 310 ~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~l~v~ 389 (790)
T PRK09200 310 GEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEVV 389 (790)
T ss_pred CEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhCCcEE
Confidence 112111 121 110 0000 0
Q ss_pred -cCC---------------CchhHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEe
Q 005605 255 -TQE---------------PERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPL 318 (688)
Q Consensus 255 -~~~---------------~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~l 318 (688)
.+. ...++..+++..+...+ ....++|||+++.++++.+++.|.+. ++.+..|
T Consensus 390 ~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~--~~~~pvLIf~~t~~~se~l~~~L~~~---------gi~~~~L 458 (790)
T PRK09200 390 QIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERH--ETGRPVLIGTGSIEQSETFSKLLDEA---------GIPHNLL 458 (790)
T ss_pred ECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHC---------CCCEEEe
Confidence 000 00122223333333332 24568999999999999999999874 7899999
Q ss_pred cCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCccc---CCeE-----EEEcCCcccceeecCCCCcccceee
Q 005605 319 YSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTI---DGIV-----YVIDPGFAKQKVYNPRVRVESLLVS 390 (688)
Q Consensus 319 h~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i---~~V~-----~VId~g~~k~~~~~~~~~~~~l~~~ 390 (688)
||.+.+.++..+...+..| +|+||||+|+||+|| |+|. |||++++
T Consensus 459 ~~~~~~~e~~~i~~ag~~g---------~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~------------------ 511 (790)
T PRK09200 459 NAKNAAKEAQIIAEAGQKG---------AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTER------------------ 511 (790)
T ss_pred cCCccHHHHHHHHHcCCCC---------eEEEEccchhcCcCCCcccccccccCcEEEeccC------------------
Confidence 9999999988887777654 799999999999999 7999 9999999
Q ss_pred ecchhhHHhhccccCCC-CCceEEEccchhhh
Q 005605 391 PISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (688)
Q Consensus 391 p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (688)
|.|...|.||+|||||. .+|.|+.+++.++.
T Consensus 512 p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 512 MESRRVDLQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred CCCHHHHHHhhccccCCCCCeeEEEEEcchHH
Confidence 99999999999999999 89999999997654
No 81
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.90 E-value=1.6e-22 Score=228.37 Aligned_cols=121 Identities=21% Similarity=0.207 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCC
Q 005605 262 YLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEG 341 (688)
Q Consensus 262 ~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~ 341 (688)
+..+.+..+.+.+. ...++|||+++.+.++.+++.|.+. ++.+..|||.+.+.++..+...+..|
T Consensus 409 K~~ai~~~i~~~~~--~~~pvLIft~s~~~se~ls~~L~~~---------gi~~~~L~a~~~~~E~~ii~~ag~~g---- 473 (762)
T TIGR03714 409 KLMATLEDVKEYHE--TGQPVLLITGSVEMSEIYSELLLRE---------GIPHNLLNAQNAAKEAQIIAEAGQKG---- 473 (762)
T ss_pred HHHHHHHHHHHHhh--CCCCEEEEECcHHHHHHHHHHHHHC---------CCCEEEecCCChHHHHHHHHHcCCCC----
Confidence 34444444444443 4568999999999999999999874 78899999999999998888877755
Q ss_pred CCCceEEEEecCccccCcccC---------CeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCce
Q 005605 342 GPPGRKIVVSTNIAETSLTID---------GIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGK 411 (688)
Q Consensus 342 ~~~~~kvlvaTniae~gi~i~---------~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~ 411 (688)
+|+||||+|+||+||+ |+.+||++.. |....+ .||+|||||. .||.
T Consensus 474 -----~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~------------------ps~rid-~qr~GRtGRqG~~G~ 529 (762)
T TIGR03714 474 -----AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERM------------------ENSRVD-LQLRGRSGRQGDPGS 529 (762)
T ss_pred -----eEEEEccccccccCCCCCccccccCCeEEEEecCC------------------CCcHHH-HHhhhcccCCCCcee
Confidence 7999999999999999 9999999887 777666 9999999999 8999
Q ss_pred EEEccchhhh
Q 005605 412 CFRLYTEKSF 421 (688)
Q Consensus 412 ~~~l~t~~~~ 421 (688)
++.+++.++.
T Consensus 530 s~~~is~eD~ 539 (762)
T TIGR03714 530 SQFFVSLEDD 539 (762)
T ss_pred EEEEEccchh
Confidence 9999997654
No 82
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.89 E-value=1.1e-22 Score=225.29 Aligned_cols=324 Identities=19% Similarity=0.245 Sum_probs=202.0
Q ss_pred cCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhcc
Q 005605 63 KSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (688)
Q Consensus 63 ~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (688)
..+++-.+|.++....+ |++++|+.|||+|||-...-++++...+.+. .+.+.++|+.|+..|-.......... .
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~--~KiVF~aP~~pLv~QQ~a~~~~~~~~--~ 133 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK--GKVVFLAPTRPLVNQQIACFSIYLIP--Y 133 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCc--ceEEEeeCCchHHHHHHHHHhhccCc--c
Confidence 57889999999999888 9999999999999999888777776544331 33445567777666544222211111 1
Q ss_pred cccceeceee-ee-cccccccccccccCHHHHHHHHhcccc--ccCCcEEeecccCcChhhHHHHHHHHHHHHhcCC-Cc
Q 005605 143 TIGEEVGYSI-RF-EDCSSARTVLKYLTDGMLLREAMTDPL--LERYKVIVLDEAHERTLATDVLFGLLKEVLKNRP-DL 217 (688)
Q Consensus 143 ~~~~~vg~~~-~~-~~~~~~~~~i~~lT~G~l~~~~~~~~l--l~~~~~lIlDEaher~~~~d~ll~~l~~i~~~~~-~~ 217 (688)
.+-...|... +. ........++.++||-.+..-+..... |+.++++|+||+| +..-..-.-.+.+.++.... +.
T Consensus 134 ~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~H-ra~kn~~Y~~Vmr~~l~~k~~~~ 212 (746)
T KOG0354|consen 134 SVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECH-RTSKNHPYNNIMREYLDLKNQGN 212 (746)
T ss_pred cceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccc-cccccccHHHHHHHHHHhhhccc
Confidence 1101111110 00 001123567889999999887765433 6889999999999 44443334444544443322 34
Q ss_pred EEEEecccc--cHHHHHchhcC------CCeeeeC--------C-cccccce----------------------------
Q 005605 218 KLVVMSATL--EAEKFQGYFYG------APLMKVP--------G-RLHPVEI---------------------------- 252 (688)
Q Consensus 218 ~vil~SAT~--~~~~~~~~~~~------~p~~~v~--------g-~~~~v~~---------------------------- 252 (688)
|+|.+|||. +.+...++..+ .+..... . ...|++.
T Consensus 213 qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~ 292 (746)
T KOG0354|consen 213 QILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLI 292 (746)
T ss_pred cEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCcc
Confidence 999999998 33443333321 0000000 0 0000000
Q ss_pred -------eecC------------CC--c----------------------------------------------------
Q 005605 253 -------FYTQ------------EP--E---------------------------------------------------- 259 (688)
Q Consensus 253 -------~~~~------------~~--~---------------------------------------------------- 259 (688)
.|.. .+ .
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~ 372 (746)
T KOG0354|consen 293 EISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARL 372 (746)
T ss_pred ccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchh
Confidence 0000 00 0
Q ss_pred ---------------------hhHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEE-
Q 005605 260 ---------------------RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVP- 317 (688)
Q Consensus 260 ---------------------~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~- 317 (688)
..+++.+...+.+.....+..++|||+.+++.++.+...|.+. ...+- .+.+-+-.
T Consensus 373 ~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~-~~~~i-r~~~fiGq~ 450 (746)
T KOG0354|consen 373 IRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQL-HELGI-KAEIFIGQG 450 (746)
T ss_pred hHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhh-hhccc-ccceeeecc
Confidence 0001111122222223345668999999999999999999852 22110 01111111
Q ss_pred ---ecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecch
Q 005605 318 ---LYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISK 394 (688)
Q Consensus 318 ---lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~ 394 (688)
--.+|++.+|+.+++.|+.| ..+|||||.|||=||||+.++.||-||. -.+.
T Consensus 451 ~s~~~~gmtqk~Q~evl~~Fr~G-------~~NvLVATSV~EEGLDI~ec~lVIcYd~------------------~snp 505 (746)
T KOG0354|consen 451 KSTQSTGMTQKEQKEVLDKFRDG-------EINVLVATSVAEEGLDIGECNLVICYDY------------------SSNP 505 (746)
T ss_pred ccccccccCHHHHHHHHHHHhCC-------CccEEEEecchhccCCcccccEEEEecC------------------CccH
Confidence 11579999999999999999 8999999999999999999999999888 6677
Q ss_pred hhHHhhccccCCCCCceEEEccchhh
Q 005605 395 ASAHQRSGRAGRTQPGKCFRLYTEKS 420 (688)
Q Consensus 395 ~~~~qR~GRaGR~~~G~~~~l~t~~~ 420 (688)
-..+||.|| ||.+.|.|+.|++..+
T Consensus 506 IrmIQrrGR-gRa~ns~~vll~t~~~ 530 (746)
T KOG0354|consen 506 IRMVQRRGR-GRARNSKCVLLTTGSE 530 (746)
T ss_pred HHHHHHhcc-ccccCCeEEEEEcchh
Confidence 789999999 9999999999999443
No 83
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.88 E-value=4.7e-22 Score=223.09 Aligned_cols=313 Identities=17% Similarity=0.154 Sum_probs=202.1
Q ss_pred CCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhccc
Q 005605 64 SLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (688)
Q Consensus 64 ~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (688)
-+.++.+|......+.+|. +...+||+|||..+..+++-.. +.. .+..++.|+..++.+.......+.+.++.+
T Consensus 54 g~~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~a-L~G---~~V~VvTpt~~LA~qdae~~~~l~~~LGLs 127 (745)
T TIGR00963 54 GMRPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNA-LTG---KGVHVVTVNDYLAQRDAEWMGQVYRFLGLS 127 (745)
T ss_pred CCCccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHH-HhC---CCEEEEcCCHHHHHHHHHHHHHHhccCCCe
Confidence 4566888888888888887 6789999999998887764222 111 234566777777777666667777777777
Q ss_pred ccceeceeeeecccccccccccccCHHHH-HHHHhcc-------ccccCCcEEeecccCcChhhHHH-------------
Q 005605 144 IGEEVGYSIRFEDCSSARTVLKYLTDGML-LREAMTD-------PLLERYKVIVLDEAHERTLATDV------------- 202 (688)
Q Consensus 144 ~~~~vg~~~~~~~~~~~~~~i~~lT~G~l-~~~~~~~-------~ll~~~~~lIlDEaher~~~~d~------------- 202 (688)
++..+|.....+........|.|.|+|++ .+.+..+ ..+.++.++|+||+|. ++-.+.
T Consensus 128 v~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs-~LIDeaRtpLiisg~~~~~ 206 (745)
T TIGR00963 128 VGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDS-ILIDEARTPLIISGPAEKS 206 (745)
T ss_pred EEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHH-HhHHhhhhHHhhcCCCCCc
Confidence 77666643322222233568999999999 5555433 2378999999999983 222111
Q ss_pred --HHHHHHHHHhcC---------CCcEEEEecccc--cHHHH-----------------------Hchh-c--------C
Q 005605 203 --LFGLLKEVLKNR---------PDLKLVVMSATL--EAEKF-----------------------QGYF-Y--------G 237 (688)
Q Consensus 203 --ll~~l~~i~~~~---------~~~~vil~SAT~--~~~~~-----------------------~~~~-~--------~ 237 (688)
+......+.+.. .+.+.+.++..- ..+.+ +.++ . +
T Consensus 207 ~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d 286 (745)
T TIGR00963 207 TELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVRD 286 (745)
T ss_pred hHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEEC
Confidence 111111111110 011222222110 11111 0011 0 1
Q ss_pred CCeeee--------CCccc------------ccce-----------------eec-------------------------
Q 005605 238 APLMKV--------PGRLH------------PVEI-----------------FYT------------------------- 255 (688)
Q Consensus 238 ~p~~~v--------~g~~~------------~v~~-----------------~~~------------------------- 255 (688)
..++.+ +|+.+ .+++ .|.
T Consensus 287 ~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv 366 (745)
T TIGR00963 287 GEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNLEVV 366 (745)
T ss_pred CEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCCCEE
Confidence 112211 11111 0000 011
Q ss_pred --CC---------------CchhHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEe
Q 005605 256 --QE---------------PERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPL 318 (688)
Q Consensus 256 --~~---------------~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~l 318 (688)
+. ...++..+.+..+...+. .+-++|||+++.+.++.+++.|.+. ++....|
T Consensus 367 ~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~--~grpvLV~t~si~~se~ls~~L~~~---------gi~~~~L 435 (745)
T TIGR00963 367 VVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHA--KGQPVLVGTTSVEKSELLSNLLKER---------GIPHNVL 435 (745)
T ss_pred EeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHc---------CCCeEEe
Confidence 00 012334444555555554 3568999999999999999999874 7888999
Q ss_pred cCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCcccCC-------eEEEEcCCcccceeecCCCCcccceeee
Q 005605 319 YSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDG-------IVYVIDPGFAKQKVYNPRVRVESLLVSP 391 (688)
Q Consensus 319 h~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~-------V~~VId~g~~k~~~~~~~~~~~~l~~~p 391 (688)
||. +.+|+..+..|..+ .-.|+||||+|+||+||+. ..|||++++ |
T Consensus 436 na~--q~~rEa~ii~~ag~-------~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~------------------p 488 (745)
T TIGR00963 436 NAK--NHEREAEIIAQAGR-------KGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTER------------------H 488 (745)
T ss_pred eCC--hHHHHHHHHHhcCC-------CceEEEEeccccCCcCCCccchhhcCCcEEEecCC------------------C
Confidence 998 88899988888877 7899999999999999998 459999999 9
Q ss_pred cchhhHHhhccccCCC-CCceEEEccchhhh
Q 005605 392 ISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (688)
Q Consensus 392 ~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (688)
.|...|.||.|||||. .||.+..+.+.++.
T Consensus 489 ~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 489 ESRRIDNQLRGRSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred CcHHHHHHHhccccCCCCCcceEEEEeccHH
Confidence 9999999999999999 89999999987654
No 84
>PRK09694 helicase Cas3; Provisional
Probab=99.87 E-value=3.6e-21 Score=223.32 Aligned_cols=303 Identities=16% Similarity=0.134 Sum_probs=177.8
Q ss_pred CCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhh----
Q 005605 65 LPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEM---- 140 (688)
Q Consensus 65 lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~---- 140 (688)
..+++.|+.+......+..++|.+|||+|||.+.......-. .. ...-.+++.-|++..+..+++++.+..
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~--~~---~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f 359 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLI--DQ---GLADSIIFALPTQATANAMLSRLEALASKLF 359 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHH--Hh---CCCCeEEEECcHHHHHHHHHHHHHHHHHHhc
Confidence 357889998866555577899999999999998654432111 00 001235555666666666777765311
Q ss_pred c-ccccceeceee---eec--------------------------ccccccccccccCHHHHHHHHhccc------cccC
Q 005605 141 D-VTIGEEVGYSI---RFE--------------------------DCSSARTVLKYLTDGMLLREAMTDP------LLER 184 (688)
Q Consensus 141 ~-~~~~~~vg~~~---~~~--------------------------~~~~~~~~i~~lT~G~l~~~~~~~~------ll~~ 184 (688)
. ..+...-|... .+. .....-..+.++|.-+++.-.+... +--.
T Consensus 360 ~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La 439 (878)
T PRK09694 360 PSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLG 439 (878)
T ss_pred CCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhc
Confidence 1 11211112110 000 0001124677888888875544321 1123
Q ss_pred CcEEeecccCcChhhHHH-HHHHHHHHHhcCCCcEEEEecccccHHH---HHchhcC---------CCeeeeCCc----c
Q 005605 185 YKVIVLDEAHERTLATDV-LFGLLKEVLKNRPDLKLVVMSATLEAEK---FQGYFYG---------APLMKVPGR----L 247 (688)
Q Consensus 185 ~~~lIlDEaher~~~~d~-ll~~l~~i~~~~~~~~vil~SAT~~~~~---~~~~~~~---------~p~~~v~g~----~ 247 (688)
-++|||||+|.-...+.. +..+++.+.+. +.++|+||||++... +.+-+.+ .|.+...+. .
T Consensus 440 ~svvIiDEVHAyD~ym~~lL~~~L~~l~~~--g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~ 517 (878)
T PRK09694 440 RSVLIVDEVHAYDAYMYGLLEAVLKAQAQA--GGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQR 517 (878)
T ss_pred cCeEEEechhhCCHHHHHHHHHHHHHHHhc--CCcEEEEeCCCCHHHHHHHHHHhcccccccccccccccccccccccee
Confidence 469999999965444443 44455444332 678999999997533 2222221 122211110 0
Q ss_pred cc-------------cceeecCCCchhHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeE
Q 005605 248 HP-------------VEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVK 314 (688)
Q Consensus 248 ~~-------------v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~ 314 (688)
++ |.+.............++..+.... ..++.+|||+||.++++.+++.|.+.. + +...
T Consensus 518 ~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~--~~g~~vLVf~NTV~~Aq~ly~~L~~~~---~---~~~~ 589 (878)
T PRK09694 518 FDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA--NAGAQVCLICNLVDDAQKLYQRLKELN---N---TQVD 589 (878)
T ss_pred eeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHH--hcCCEEEEEECCHHHHHHHHHHHHhhC---C---CCce
Confidence 00 0000000000001122333333322 346789999999999999999998641 1 2467
Q ss_pred EEEecCCCCHHHh----hcccCCC-CCCCCCCCCCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCccccee
Q 005605 315 VVPLYSTLPPAMQ----QKIFEPA-PPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLV 389 (688)
Q Consensus 315 v~~lh~~l~~~~r----~~~~~~~-~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~ 389 (688)
+..+||.+++.+| +++++.| ++| .++..+|||||+|+|+|||| ++++||....
T Consensus 590 v~llHsrf~~~dR~~~E~~vl~~fgk~g----~r~~~~ILVaTQViE~GLDI-d~DvlItdla----------------- 647 (878)
T PRK09694 590 IDLFHARFTLNDRREKEQRVIENFGKNG----KRNQGRILVATQVVEQSLDL-DFDWLITQLC----------------- 647 (878)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcC----CcCCCeEEEECcchhheeec-CCCeEEECCC-----------------
Confidence 9999999999999 4566777 444 11125899999999999999 4788886444
Q ss_pred eecchhhHHhhccccCCC
Q 005605 390 SPISKASAHQRSGRAGRT 407 (688)
Q Consensus 390 ~p~s~~~~~qR~GRaGR~ 407 (688)
| .++++||+||+||.
T Consensus 648 -P--idsLiQRaGR~~R~ 662 (878)
T PRK09694 648 -P--VDLLFQRLGRLHRH 662 (878)
T ss_pred -C--HHHHHHHHhccCCC
Confidence 6 57999999999998
No 85
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.85 E-value=1.2e-20 Score=217.37 Aligned_cols=309 Identities=15% Similarity=0.197 Sum_probs=187.8
Q ss_pred CChHHHHHHHHHHhcC---CEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhcc
Q 005605 66 PVWQQKEEFLQVLKAN---QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (688)
Q Consensus 66 p~~~~q~~ii~~i~~g---~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (688)
.+++.|+++++.+.++ +++++.|+||||||..+..++..... . ..+.++++|+..+. .++.+++.+..+.
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~--~--g~~vLvLvPt~~L~---~Q~~~~l~~~fg~ 216 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA--Q--GKQALVLVPEIALT---PQMLARFRARFGA 216 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH--c--CCeEEEEeCcHHHH---HHHHHHHHHHhCC
Confidence 4788999999999874 78999999999999988766544321 1 12345556555544 4455666665554
Q ss_pred cccceeceeee---ecc---cccccccccccCHHHHHHHHhccccccCCcEEeecccCcChhhHHH-----HHHHHHHHH
Q 005605 143 TIGEEVGYSIR---FED---CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDV-----LFGLLKEVL 211 (688)
Q Consensus 143 ~~~~~vg~~~~---~~~---~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEaher~~~~d~-----ll~~l~~i~ 211 (688)
.+....|.... .+. .......|.+.|++.+. ..+.++++||+||+|..+...+. ..++ ..+.
T Consensus 217 ~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~v-a~~r 289 (679)
T PRK05580 217 PVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDL-AVVR 289 (679)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc------ccccCCCEEEEECCCccccccCcCCCCcHHHH-HHHH
Confidence 44333332111 100 11123567788887653 23789999999999964433221 1111 1222
Q ss_pred hcCCCcEEEEecccccHHHHHchhc-CCCeeeeCCcc----cccceeecCCCc-------hhHHHHHHHHHHHHHhcCCC
Q 005605 212 KNRPDLKLVVMSATLEAEKFQGYFY-GAPLMKVPGRL----HPVEIFYTQEPE-------RDYLEAAIRTVVQIHMCEPS 279 (688)
Q Consensus 212 ~~~~~~~vil~SAT~~~~~~~~~~~-~~p~~~v~g~~----~~v~~~~~~~~~-------~~~~~~~~~~l~~i~~~~~~ 279 (688)
....+.++|++|||...+.+..... ....+..+.+. .| .+....... ......+++.+.+.. +.+
T Consensus 290 a~~~~~~~il~SATps~~s~~~~~~g~~~~~~l~~r~~~~~~p-~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l--~~g 366 (679)
T PRK05580 290 AKLENIPVVLGSATPSLESLANAQQGRYRLLRLTKRAGGARLP-EVEIIDMRELLRGENGSFLSPPLLEAIKQRL--ERG 366 (679)
T ss_pred hhccCCCEEEEcCCCCHHHHHHHhccceeEEEeccccccCCCC-eEEEEechhhhhhcccCCCCHHHHHHHHHHH--HcC
Confidence 2334789999999998777654322 22233333221 11 111111100 001122333333322 234
Q ss_pred CCEEEecCcH------------------------------------------------------------HHHHHHHHHH
Q 005605 280 GDILVFLTGE------------------------------------------------------------EEIEDACRKI 299 (688)
Q Consensus 280 g~iLVFl~~~------------------------------------------------------------~~i~~~~~~L 299 (688)
.++|||+|.+ ..++.+++.|
T Consensus 367 ~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l 446 (679)
T PRK05580 367 EQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEEL 446 (679)
T ss_pred CeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHH
Confidence 4788888752 1345555555
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCCH--HHhhcccCCCCCCCCCCCCCceEEEEecCccccCcccCCeEEE--EcCCcccc
Q 005605 300 TKEITNMGDQVGPVKVVPLYSTLPP--AMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYV--IDPGFAKQ 375 (688)
Q Consensus 300 ~~~~~~~~~~~~~~~v~~lh~~l~~--~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~V--Id~g~~k~ 375 (688)
.+. .++..+..+|+++.+ ++++++++.|++| +..|||+|+++++|+|+|+|++| +|.|..-.
T Consensus 447 ~~~-------fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g-------~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~ 512 (679)
T PRK05580 447 AEL-------FPEARILRIDRDTTRRKGALEQLLAQFARG-------EADILIGTQMLAKGHDFPNVTLVGVLDADLGLF 512 (679)
T ss_pred HHh-------CCCCcEEEEeccccccchhHHHHHHHHhcC-------CCCEEEEChhhccCCCCCCcCEEEEEcCchhcc
Confidence 554 257889999999874 5688999999998 88999999999999999999988 57665110
Q ss_pred -eeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEE
Q 005605 376 -KVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFR 414 (688)
Q Consensus 376 -~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~ 414 (688)
..|... -..-..+.|++|||||. .+|.|+-
T Consensus 513 ~pdfra~---------Er~~~~l~q~~GRagR~~~~g~vii 544 (679)
T PRK05580 513 SPDFRAS---------ERTFQLLTQVAGRAGRAEKPGEVLI 544 (679)
T ss_pred CCccchH---------HHHHHHHHHHHhhccCCCCCCEEEE
Confidence 011000 11346799999999997 8899884
No 86
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.85 E-value=1.7e-22 Score=221.26 Aligned_cols=450 Identities=8% Similarity=-0.132 Sum_probs=343.4
Q ss_pred HhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhh
Q 005605 61 KRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (688)
Q Consensus 61 ~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (688)
+++-.|.+.+.+.|++++..+.+.++.+.+||||+++.++.+.++. ... ......-++.+++|+..+..++...+...
T Consensus 401 etgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerv-a~e-r~e~~g~tvgy~vRf~Sa~prpyg~i~fc 478 (1282)
T KOG0921|consen 401 ETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERV-ANE-RGEEVGETCGYNVRFDSATPRPYGSIMFC 478 (1282)
T ss_pred cccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHH-HHh-hHHhhcccccccccccccccccccceeee
Confidence 3577899999999999999999999999999999999999999875 222 11223457788999999999998888888
Q ss_pred cccccceeceeeeeccccc-ccccccccCHHHHHHHHhccccccCCcEEeecccCcChhhHHHHHHHHHHHHhcCCCcEE
Q 005605 141 DVTIGEEVGYSIRFEDCSS-ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKL 219 (688)
Q Consensus 141 ~~~~~~~vg~~~~~~~~~~-~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEaher~~~~d~ll~~l~~i~~~~~~~~v 219 (688)
++.++...++..+++.... .+..+...+.+.+++.++++ +......+.||.|++++++|++...+..+ .++
T Consensus 479 tvgvllr~~e~glrg~sh~i~deiherdv~~dfll~~lr~--m~~ty~dl~v~lmsatIdTd~f~~~f~~~------p~~ 550 (1282)
T KOG0921|consen 479 TVGVLLRMMENGLRGISHVIIDEIHERDVDTDFVLIVLRE--MISTYRDLRVVLMSATIDTDLFTNFFSSI------PDV 550 (1282)
T ss_pred ccchhhhhhhhcccccccccchhhhhhccchHHHHHHHHh--hhccchhhhhhhhhcccchhhhhhhhccc------cce
Confidence 8777777777766654433 34455678999999988766 56677888999999999999999888774 355
Q ss_pred EEecccccHHHHHchhcCCCeeeeCCcccccceee------------------------cC------------CCchhHH
Q 005605 220 VVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFY------------------------TQ------------EPERDYL 263 (688)
Q Consensus 220 il~SAT~~~~~~~~~~~~~p~~~v~g~~~~v~~~~------------------------~~------------~~~~~~~ 263 (688)
.++++|.++..|..++..++...++++.++++.++ .. .......
T Consensus 551 ~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~ 630 (1282)
T KOG0921|consen 551 TVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLI 630 (1282)
T ss_pred eeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHHH
Confidence 89999999999998888888888887655543211 00 1123344
Q ss_pred HHHHHHHHH------HHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCC
Q 005605 264 EAAIRTVVQ------IHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPP 337 (688)
Q Consensus 264 ~~~~~~l~~------i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g 337 (688)
++++..+.. +.--.+++..|+||+++.-+......+.+. ..++ .....+.+.|..+...+++.+++....+
T Consensus 631 Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y-~ilp--~Hsq~~~~eqrkvf~~~p~gv~kii~st 707 (1282)
T KOG0921|consen 631 EALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKY-EILP--LHSQLTSQEQRKVFEPVPEGVTKIILST 707 (1282)
T ss_pred HHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhc-cccc--chhhcccHhhhhccCccccccccccccc
Confidence 444333221 222356889999999999888877777653 2222 2346788999999999999999999988
Q ss_pred CCCCCCCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCCCCceEEEccc
Q 005605 338 SKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYT 417 (688)
Q Consensus 338 ~~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t 417 (688)
.+++...|+.+++.+++..+.+|++++-.+.+.+.....++...+.|.+.-.-.||.||++|...|.||.++.
T Consensus 708 -------niaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~~l~ 780 (1282)
T KOG0921|consen 708 -------NIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFEALE 780 (1282)
T ss_pred -------ceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccHHHHHHHHH
Confidence 8999999999999999999999999999999999999999988888999999999999999999999999999
Q ss_pred hhhhcccCCCCCCCcccccCcHHHHHHHHHcCCCCCccc--cCCCCCcHHHHHHHHHHHHHcCCccCCC--CcChhhhhc
Q 005605 418 EKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHF--DFMDPPAPETLMRALEVLNYLGALDDDG--NLTEMGEKM 493 (688)
Q Consensus 418 ~~~~~~~l~~~~~pei~r~~l~~~~L~l~~~~~~~~~~f--~~~~~P~~~~i~~a~~~L~~lgald~~~--~lT~lG~~~ 493 (688)
...+.. |..++.|||.++.+...++.++.+-...+..+ +.+.+|+......+ .|..-+-+...| .+|+.++..
T Consensus 781 ~~~t~e-m~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~--~ld~n~elt~lg~~la~l~iep~ 857 (1282)
T KOG0921|consen 781 DHGTAE-MFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREMG--ALDANDELTPLGRMLARLPIEPR 857 (1282)
T ss_pred hcCcHh-hhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHhh--hhhccCcccchhhhhhhccCccc
Confidence 998887 99999999999988877777766544444444 44555555444333 333334344444 589999999
Q ss_pred ccCCCChhhhhhhhhcCCCCChHHHHHHHHHhcCCCCCCC
Q 005605 494 SEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVR 533 (688)
Q Consensus 494 ~~lpl~p~~~k~ll~~~~~~c~~~~l~i~a~ls~~~~f~~ 533 (688)
...|+.|..|++....+.+-..+-..+++++-....+|..
T Consensus 858 ~~k~~~lg~~~g~~~~m~~~as~~s~~~~~~~~~~~~~rl 897 (1282)
T KOG0921|consen 858 IGKMMILGTALGAGSVMCDVASAMSFPTPFVPREKHHSRL 897 (1282)
T ss_pred ccceeeechhhccchhhhhhhccccccccccccccccccc
Confidence 9999999999988877665544544555554444445443
No 87
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.85 E-value=1e-19 Score=181.70 Aligned_cols=305 Identities=19% Similarity=0.271 Sum_probs=203.3
Q ss_pred HHHhcCCCChHH--HHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHH
Q 005605 59 LEKRKSLPVWQQ--KEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRV 136 (688)
Q Consensus 59 l~~~~~lp~~~~--q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (688)
|.=.|.|.+... -..++..+.+.+.++|.|-||+|||..+-+.+-... .++..|+...||.--...++.|+
T Consensus 92 L~W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al-------~~G~~vciASPRvDVclEl~~Rl 164 (441)
T COG4098 92 LQWKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQAL-------NQGGRVCIASPRVDVCLELYPRL 164 (441)
T ss_pred eeeccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHH-------hcCCeEEEecCcccchHHHHHHH
Confidence 334455554432 245677889999999999999999998765443222 12344666778887788999999
Q ss_pred HHhhc-ccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecccCcChhhHHHHHHHHHHHHhcCC
Q 005605 137 AEEMD-VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRP 215 (688)
Q Consensus 137 ~~~~~-~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEaher~~~~d~ll~~l~~i~~~~~ 215 (688)
.+... +.+....|.+ .......+.++|.-+++|.- ..++++|+||+|--+...|..+..--.-.. .+
T Consensus 165 k~aF~~~~I~~Lyg~S-----~~~fr~plvVaTtHQLlrFk------~aFD~liIDEVDAFP~~~d~~L~~Av~~ar-k~ 232 (441)
T COG4098 165 KQAFSNCDIDLLYGDS-----DSYFRAPLVVATTHQLLRFK------QAFDLLIIDEVDAFPFSDDQSLQYAVKKAR-KK 232 (441)
T ss_pred HHhhccCCeeeEecCC-----chhccccEEEEehHHHHHHH------hhccEEEEeccccccccCCHHHHHHHHHhh-cc
Confidence 87664 5555555533 12234678899999999864 457999999999777777765544322222 22
Q ss_pred CcEEEEecccccHHHHHchhcC-CCeeeeCCccc----ccceeecCCCchhHH-----HHHHHHHHHHHhcCCCCCEEEe
Q 005605 216 DLKLVVMSATLEAEKFQGYFYG-APLMKVPGRLH----PVEIFYTQEPERDYL-----EAAIRTVVQIHMCEPSGDILVF 285 (688)
Q Consensus 216 ~~~vil~SAT~~~~~~~~~~~~-~p~~~v~g~~~----~v~~~~~~~~~~~~~-----~~~~~~l~~i~~~~~~g~iLVF 285 (688)
+-.+|++|||...+.-.+-..+ -..+.++.|.| |+..+....+...++ ...+...++-+. ...-++|||
T Consensus 233 ~g~~IylTATp~k~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~-~~~~P~liF 311 (441)
T COG4098 233 EGATIYLTATPTKKLERKILKGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQR-KTGRPVLIF 311 (441)
T ss_pred cCceEEEecCChHHHHHHhhhCCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHH-hcCCcEEEE
Confidence 5678899999864443333322 22355555533 343333332322222 222222222222 234689999
Q ss_pred cCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCcccCCeE
Q 005605 286 LTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIV 365 (688)
Q Consensus 286 l~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~ 365 (688)
+|+.+-.+.+++.|++.+ +...+...||.- ..|.+-.+.|++| +.+++++|.|.|||+|+|+|+
T Consensus 312 ~p~I~~~eq~a~~lk~~~-------~~~~i~~Vhs~d--~~R~EkV~~fR~G-------~~~lLiTTTILERGVTfp~vd 375 (441)
T COG4098 312 FPEIETMEQVAAALKKKL-------PKETIASVHSED--QHRKEKVEAFRDG-------KITLLITTTILERGVTFPNVD 375 (441)
T ss_pred ecchHHHHHHHHHHHhhC-------CccceeeeeccC--ccHHHHHHHHHcC-------ceEEEEEeehhhcccccccce
Confidence 999999999999997653 456678888863 4577778899999 899999999999999999996
Q ss_pred E-EEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC--CC-ceEEEcc
Q 005605 366 Y-VIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT--QP-GKCFRLY 416 (688)
Q Consensus 366 ~-VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~--~~-G~~~~l~ 416 (688)
+ |+++.= . --+.++.+|-+||+||. +| |..+-|.
T Consensus 376 V~Vlgaeh---~--------------vfTesaLVQIaGRvGRs~~~PtGdv~FFH 413 (441)
T COG4098 376 VFVLGAEH---R--------------VFTESALVQIAGRVGRSLERPTGDVLFFH 413 (441)
T ss_pred EEEecCCc---c--------------cccHHHHHHHhhhccCCCcCCCCcEEEEe
Confidence 5 556332 1 23788999999999998 44 7655553
No 88
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.85 E-value=8.9e-20 Score=204.11 Aligned_cols=482 Identities=18% Similarity=0.233 Sum_probs=295.7
Q ss_pred cCCCChHHHHHHHHH-HhcCCEEEEEeCCCCChhcchhHHHhcCccC--CC-ccccCceEEEEcCCchhhhccHHHHHHH
Q 005605 63 KSLPVWQQKEEFLQV-LKANQVIILVGETGSGKTTQIPQFVLEGVDI--ET-PDRRRKMMIACTQPRRVAAMSVSRRVAE 138 (688)
Q Consensus 63 ~~lp~~~~q~~ii~~-i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~--~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~ 138 (688)
++.....+|.++.|. -..+++.+|+||||||||-++.+-++....- .. .-......++..-|....+....+...+
T Consensus 107 ~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~k 186 (1230)
T KOG0952|consen 107 SFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSK 186 (1230)
T ss_pred cHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhh
Confidence 445566788888876 5678899999999999999887666543311 00 0011244566667777777788888876
Q ss_pred hh---cccccceeceeeeecccccccccccccCHHHHHHHHhc-----cccccCCcEEeecccCcChhhHHH-HHHHHHH
Q 005605 139 EM---DVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMT-----DPLLERYKVIVLDEAHERTLATDV-LFGLLKE 209 (688)
Q Consensus 139 ~~---~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~-----~~ll~~~~~lIlDEaher~~~~d~-ll~~l~~ 209 (688)
.+ +..+.+..|-.- .......+++|.++||... ++... ..+.+.+++||+||+|+---+.+- +..++.+
T Consensus 187 kl~~~gi~v~ELTGD~q-l~~tei~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaR 264 (1230)
T KOG0952|consen 187 KLAPLGISVRELTGDTQ-LTKTEIADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVAR 264 (1230)
T ss_pred hcccccceEEEecCcch-hhHHHHHhcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHH
Confidence 54 455555555321 1112235677777777643 32221 235889999999999952222222 3333333
Q ss_pred HH----hcCCCcEEEEecccc-cHHHHHchhcCCC---eeeeCCccccc--ceeecCCCch-------hHHHHHHHHHHH
Q 005605 210 VL----KNRPDLKLVVMSATL-EAEKFQGYFYGAP---LMKVPGRLHPV--EIFYTQEPER-------DYLEAAIRTVVQ 272 (688)
Q Consensus 210 i~----~~~~~~~vil~SAT~-~~~~~~~~~~~~p---~~~v~g~~~~v--~~~~~~~~~~-------~~~~~~~~~l~~ 272 (688)
.. .....++++.+|||+ +.+.+++|+.-.| ++...++..|| ++.+.-.+.. +.-+.+...+.+
T Consensus 265 tlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e 344 (1230)
T KOG0952|consen 265 TLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVE 344 (1230)
T ss_pred HHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHH
Confidence 33 223478999999999 6889999987533 45555554444 4444433222 111223333444
Q ss_pred HHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCC-----CC--C-------eEEEEecCCCCHHHhhcccCCCCCCC
Q 005605 273 IHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQ-----VG--P-------VKVVPLYSTLPPAMQQKIFEPAPPPS 338 (688)
Q Consensus 273 i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~-----~~--~-------~~v~~lh~~l~~~~r~~~~~~~~~g~ 338 (688)
.+. .+.+++|||+++++.-..++.|.+.....+.. .+ + ......|++|...+|+.+.+.|..|
T Consensus 345 ~~~--~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G- 421 (1230)
T KOG0952|consen 345 FLQ--EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEG- 421 (1230)
T ss_pred HHH--cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcC-
Confidence 443 45689999999999999999998765443221 01 1 3456789999999999999999999
Q ss_pred CCCCCCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC---CCceEEEc
Q 005605 339 KEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT---QPGKCFRL 415 (688)
Q Consensus 339 ~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~---~~G~~~~l 415 (688)
..+|++||.-.+-|+..|+=-++| -....||+..|.-. -.+..+-+|--|||||. ..|..+-+
T Consensus 422 ------~i~vL~cTaTLAwGVNLPA~aViI----KGT~~ydsskg~f~----dlgilDVlQifGRAGRPqFd~~G~giIi 487 (1230)
T KOG0952|consen 422 ------HIKVLCCTATLAWGVNLPAYAVII----KGTQVYDSSKGSFV----DLGILDVLQIFGRAGRPQFDSSGEGIII 487 (1230)
T ss_pred ------CceEEEecceeeeccCCcceEEEe----cCCcccccccCcee----eehHHHHHHHHhccCCCCCCCCceEEEE
Confidence 899999999999999999766666 23567988776432 34667788999999998 45777766
Q ss_pred cchh---hhccc--------------CCCCCCCcccc---cCcHHHHHHHHH------cCCCCC---ccccCC-CCCcH-
Q 005605 416 YTEK---SFNND--------------LQPQTYPEILR---SNLANTVLTLKK------LGIDDL---VHFDFM-DPPAP- 464 (688)
Q Consensus 416 ~t~~---~~~~~--------------l~~~~~pei~r---~~l~~~~L~l~~------~~~~~~---~~f~~~-~~P~~- 464 (688)
-+.+ .|.+. +.++-..||.- .++++.+=-|+. ++-+.. .....+ .-|..
T Consensus 488 Tt~dkl~~Y~sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~~~l~~dp~l~ 567 (1230)
T KOG0952|consen 488 TTRDKLDHYESLLTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISYEELEPDPRLE 567 (1230)
T ss_pred ecccHHHHHHHHHcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeEEEEeccChHHhhhhhhcccCCchHH
Confidence 5543 23321 11222233332 233333333332 111110 001112 22322
Q ss_pred ----HHHHHHHHHHHHcC--CccCCC---CcChhhhhcccCCCChhhhhhhhhcCC-CCChHHHHHHHHHhcCCCCCCCC
Q 005605 465 ----ETLMRALEVLNYLG--ALDDDG---NLTEMGEKMSEFPLDPQMSKMLVESPK-YNCSNEILSISAMLSVPNCFVRP 534 (688)
Q Consensus 465 ----~~i~~a~~~L~~lg--ald~~~---~lT~lG~~~~~lpl~p~~~k~ll~~~~-~~c~~~~l~i~a~ls~~~~f~~~ 534 (688)
+-+..++..|.... ..|.++ ..|++||.++.+.+.-..=+.++.... +--.++++.++|+-++-+-.-..
T Consensus 568 s~~~~l~~~~~~~L~~~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~~k~~~se~~iL~lis~aeEfs~ik~R 647 (1230)
T KOG0952|consen 568 SHRRELCLVAAMELDKVQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFNNLPKSFYSEDDILALISMAEEFSQIKVR 647 (1230)
T ss_pred HHHHHHHHHHHHHhhhhheEEEecccceEcccchhhhhhhhhhhhHHHHHHHhcccccCCHHHHHHHHHhhHhhhhhhhh
Confidence 23445555555553 335443 689999999999999999999998877 66778888887775543322222
Q ss_pred hHHHHHHHHHHHHh------CCCCCcHHHHHHHHH
Q 005605 535 REAQKAADEAKARF------GHIDGDHLTLLNVYH 563 (688)
Q Consensus 535 ~~~~~~~~~~~~~~------~~~~sD~~~~l~~~~ 563 (688)
.++.++.+...... ....++--.++.+|.
T Consensus 648 ~eE~k~l~el~~~~~~~~~~~~~~gk~nil~q~~I 682 (1230)
T KOG0952|consen 648 EEEKKELKELNEDSCEKYPFGGEKGKVNILLQAYI 682 (1230)
T ss_pred hhhHHHHHHHHhcccccccccccchhHHHHHHhhh
Confidence 33333333333222 222466666776664
No 89
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.84 E-value=9.2e-20 Score=206.07 Aligned_cols=301 Identities=15% Similarity=0.183 Sum_probs=176.4
Q ss_pred CCChHHHHHHHHHHhc-C--CEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhc
Q 005605 65 LPVWQQKEEFLQVLKA-N--QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (688)
Q Consensus 65 lp~~~~q~~ii~~i~~-g--~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (688)
..+.++|++.+..+.. | +.-+|+.|||+|||.+....+..- . .+.++++++..+..|.. +.+.+...
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l---~----k~tLILvps~~Lv~QW~---~ef~~~~~ 323 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV---K----KSCLVLCTSAVSVEQWK---QQFKMWST 323 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh---C----CCEEEEeCcHHHHHHHH---HHHHHhcC
Confidence 4567889999988663 3 245778999999998766444321 1 12444444444443433 33433222
Q ss_pred c---cccceeceeeeecccccccccccccCHHHHHHHHhc--------ccc-ccCCcEEeecccCcChhhHHHHHHHHHH
Q 005605 142 V---TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMT--------DPL-LERYKVIVLDEAHERTLATDVLFGLLKE 209 (688)
Q Consensus 142 ~---~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~--------~~l-l~~~~~lIlDEaher~~~~d~ll~~l~~ 209 (688)
. .++...|.. .........|.+.|..++...... ..+ -..+.+||+||+|. +-...+..++..
T Consensus 324 l~~~~I~~~tg~~---k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~--lpA~~fr~il~~ 398 (732)
T TIGR00603 324 IDDSQICRFTSDA---KERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHV--VPAAMFRRVLTI 398 (732)
T ss_pred CCCceEEEEecCc---ccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccc--ccHHHHHHHHHh
Confidence 1 122111211 000011245666777665421110 111 24688999999995 233333334443
Q ss_pred HHhcCCCcEEEEeccccc--HHHHH--chhcCCCeeee-------CCccccccee--ecCCCch---hHHH---------
Q 005605 210 VLKNRPDLKLVVMSATLE--AEKFQ--GYFYGAPLMKV-------PGRLHPVEIF--YTQEPER---DYLE--------- 264 (688)
Q Consensus 210 i~~~~~~~~vil~SAT~~--~~~~~--~~~~~~p~~~v-------~g~~~~v~~~--~~~~~~~---~~~~--------- 264 (688)
+ .....+.+|||+. ..... .++.+.++... .|..-+++.. +.+.... +|+.
T Consensus 399 l----~a~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l 474 (732)
T TIGR00603 399 V----QAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLL 474 (732)
T ss_pred c----CcCcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHH
Confidence 3 2335689999992 11222 22223333222 2433333221 1111110 1110
Q ss_pred -----HHHHH---HHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCC
Q 005605 265 -----AAIRT---VVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPP 336 (688)
Q Consensus 265 -----~~~~~---l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~ 336 (688)
..+.. ++..|. ..+.++|||+.....++.+++.|. +..+||++++.+|.++++.|+.
T Consensus 475 ~~~np~K~~~~~~Li~~he-~~g~kiLVF~~~~~~l~~~a~~L~--------------~~~I~G~ts~~ER~~il~~Fr~ 539 (732)
T TIGR00603 475 YVMNPNKFRACQFLIRFHE-QRGDKIIVFSDNVFALKEYAIKLG--------------KPFIYGPTSQQERMQILQNFQH 539 (732)
T ss_pred hhhChHHHHHHHHHHHHHh-hcCCeEEEEeCCHHHHHHHHHHcC--------------CceEECCCCHHHHHHHHHHHHh
Confidence 01122 223332 245689999999887777766541 3348999999999999999986
Q ss_pred CCCCCCCCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeee-cchhhHHhhccccCCCC-CceE--
Q 005605 337 PSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSP-ISKASAHQRSGRAGRTQ-PGKC-- 412 (688)
Q Consensus 337 g~~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p-~s~~~~~qR~GRaGR~~-~G~~-- 412 (688)
+. ..++||+|+++.+|||+|++++||.... | .|...|+||.||++|.. .|.+
T Consensus 540 ~~------~i~vLv~SkVgdeGIDlP~a~vvI~~s~------------------~~gS~~q~iQRlGRilR~~~~~~~~~ 595 (732)
T TIGR00603 540 NP------KVNTIFLSKVGDTSIDLPEANVLIQISS------------------HYGSRRQEAQRLGRILRAKKGSDAEE 595 (732)
T ss_pred CC------CccEEEEecccccccCCCCCCEEEEeCC------------------CCCCHHHHHHHhcccccCCCCCcccc
Confidence 41 5699999999999999999999998665 5 59999999999999994 4555
Q ss_pred -----EEccchhhhcc
Q 005605 413 -----FRLYTEKSFNN 423 (688)
Q Consensus 413 -----~~l~t~~~~~~ 423 (688)
|+|++++..+.
T Consensus 596 ~~A~fY~lVs~dT~E~ 611 (732)
T TIGR00603 596 YNAFFYSLVSKDTQEM 611 (732)
T ss_pred ccceEEEEecCCchHH
Confidence 89988765543
No 90
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.83 E-value=3e-20 Score=215.03 Aligned_cols=318 Identities=15% Similarity=0.143 Sum_probs=214.0
Q ss_pred HHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHH
Q 005605 59 LEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAE 138 (688)
Q Consensus 59 l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~ 138 (688)
...-|..-..+-|.++|..++.|+++.+.-|||.|||..+.+|.+-.. + +-++..|+..........+.
T Consensus 257 ~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~---------g-itvVISPL~SLm~DQv~~L~- 325 (941)
T KOG0351|consen 257 KEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLG---------G-VTVVISPLISLMQDQVTHLS- 325 (941)
T ss_pred HHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccC---------C-ceEEeccHHHHHHHHHHhhh-
Confidence 344467777788999999999999999999999999998766544221 1 22333455443333333331
Q ss_pred hhcccccceeceeee------ecccccc--cccccccCHHHHHHHHhcc---ccccC---CcEEeecccCcChhhHHHH-
Q 005605 139 EMDVTIGEEVGYSIR------FEDCSSA--RTVLKYLTDGMLLREAMTD---PLLER---YKVIVLDEAHERTLATDVL- 203 (688)
Q Consensus 139 ~~~~~~~~~vg~~~~------~~~~~~~--~~~i~~lT~G~l~~~~~~~---~ll~~---~~~lIlDEaher~~~~d~l- 203 (688)
..++.....-+.+.. +...... .-++.|+||..+....... ..+.. ...+|+||||.-+.+...+
T Consensus 326 ~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFR 405 (941)
T KOG0351|consen 326 KKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFR 405 (941)
T ss_pred hcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhccccc
Confidence 112111111111110 0011112 3456688887765432111 11444 7889999999766665554
Q ss_pred --HHHHHHHHhcCCCcEEEEecccccHHH---HHchhc-CCCeeeeCCcccccceeecCCCchhHHHHHHHHHHHHHhcC
Q 005605 204 --FGLLKEVLKNRPDLKLVVMSATLEAEK---FQGYFY-GAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCE 277 (688)
Q Consensus 204 --l~~l~~i~~~~~~~~vil~SAT~~~~~---~~~~~~-~~p~~~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~ 277 (688)
..-+..+..+.+..-+|.+|||..... +.+-++ ..|.+.-.+... -..+|...+..+ .......+..+-...
T Consensus 406 p~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR-~NL~yeV~~k~~-~~~~~~~~~~~~~~~ 483 (941)
T KOG0351|consen 406 PSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSFNR-PNLKYEVSPKTD-KDALLDILEESKLRH 483 (941)
T ss_pred HHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCC-CCceEEEEeccC-ccchHHHHHHhhhcC
Confidence 333344445566788999999995432 333322 233333333221 223333333221 122333444444556
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCcccc
Q 005605 278 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAET 357 (688)
Q Consensus 278 ~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~ 357 (688)
+.+.+||+|.++.+++.+...|+.. ++.+..+|++|+..+|+.|...|-.+ +.+||+||=....
T Consensus 484 ~~~s~IIYC~sr~~ce~vs~~L~~~---------~~~a~~YHAGl~~~~R~~Vq~~w~~~-------~~~VivATVAFGM 547 (941)
T KOG0351|consen 484 PDQSGIIYCLSRKECEQVSAVLRSL---------GKSAAFYHAGLPPKERETVQKAWMSD-------KIRVIVATVAFGM 547 (941)
T ss_pred CCCCeEEEeCCcchHHHHHHHHHHh---------chhhHhhhcCCCHHHHHHHHHHHhcC-------CCeEEEEEeeccC
Confidence 7789999999999999999999875 68899999999999999999999998 8999999999999
Q ss_pred CcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccchhhhcc
Q 005605 358 SLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFNN 423 (688)
Q Consensus 358 gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~~~ 423 (688)
|||.|||+.||+|++ |.|.+.|.|-+|||||. .+-.|..||+-.++..
T Consensus 548 GIdK~DVR~ViH~~l------------------Pks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~ 596 (941)
T KOG0351|consen 548 GIDKPDVRFVIHYSL------------------PKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISE 596 (941)
T ss_pred CCCCCceeEEEECCC------------------chhHHHHHHhccccCcCCCcceeEEecchhHHHH
Confidence 999999999999999 99999999999999999 8899999999887654
No 91
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.82 E-value=5.6e-20 Score=187.56 Aligned_cols=310 Identities=16% Similarity=0.122 Sum_probs=195.9
Q ss_pred HHHHHHHH-HHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHH------hhc
Q 005605 69 QQKEEFLQ-VLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAE------EMD 141 (688)
Q Consensus 69 ~~q~~ii~-~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~------~~~ 141 (688)
+.|+..+. .+..+++|-++-|||+|||+.+.+|-+-.. ++-|+ ..|+...+....+.+.. .++
T Consensus 23 ~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~---------gITIV-~SPLiALIkDQiDHL~~LKVp~~SLN 92 (641)
T KOG0352|consen 23 RLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHG---------GITIV-ISPLIALIKDQIDHLKRLKVPCESLN 92 (641)
T ss_pred hHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhC---------CeEEE-ehHHHHHHHHHHHHHHhcCCchhHhc
Confidence 45665555 467788999999999999998887766432 33333 34554444333333321 111
Q ss_pred ccccceec-eeeeec-ccccccccccccCHHHH-----HHHHhccccccCCcEEeecccCcChhhHHHH---HHHHHHHH
Q 005605 142 VTIGEEVG-YSIRFE-DCSSARTVLKYLTDGML-----LREAMTDPLLERYKVIVLDEAHERTLATDVL---FGLLKEVL 211 (688)
Q Consensus 142 ~~~~~~vg-~~~~~~-~~~~~~~~i~~lT~G~l-----~~~~~~~~ll~~~~~lIlDEaher~~~~d~l---l~~l~~i~ 211 (688)
.++. .+. -.+..+ .......++.|+||.+- +..+..-..-....++++||||.-+.+...+ .--|-.+.
T Consensus 93 SKlS-t~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LR 171 (641)
T KOG0352|consen 93 SKLS-TVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLR 171 (641)
T ss_pred chhh-HHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHH
Confidence 1100 000 000000 01223456667888764 2333222223456899999999755543322 12234455
Q ss_pred hcCCCcEEEEecccccHHHHHchh----cCCCeeeeCCcccccceeecCCC---chhHHHHHHHHHHHHHh---------
Q 005605 212 KNRPDLKLVVMSATLEAEKFQGYF----YGAPLMKVPGRLHPVEIFYTQEP---ERDYLEAAIRTVVQIHM--------- 275 (688)
Q Consensus 212 ~~~~~~~vil~SAT~~~~~~~~~~----~~~p~~~v~g~~~~v~~~~~~~~---~~~~~~~~~~~l~~i~~--------- 275 (688)
...++.--+.++||.+.+.-.+.| ...||-......|.-..+|-..- ..|-+..+.+...+.+.
T Consensus 172 S~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~ 251 (641)
T KOG0352|consen 172 SVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNK 251 (641)
T ss_pred hhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCC
Confidence 567788889999999654433332 23444333333333333332211 01111111111111111
Q ss_pred cCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCcc
Q 005605 276 CEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIA 355 (688)
Q Consensus 276 ~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTnia 355 (688)
+...|--||+|.|++++++++-.|... ++....+|++|...+|..+.+...++ ...||+||+-.
T Consensus 252 K~~~GCGIVYCRTR~~cEq~AI~l~~~---------Gi~A~AYHAGLK~~ERTeVQe~WM~~-------~~PvI~AT~SF 315 (641)
T KOG0352|consen 252 KTFTGCGIVYCRTRNECEQVAIMLEIA---------GIPAMAYHAGLKKKERTEVQEKWMNN-------EIPVIAATVSF 315 (641)
T ss_pred CCcCcceEEEeccHHHHHHHHHHhhhc---------CcchHHHhcccccchhHHHHHHHhcC-------CCCEEEEEecc
Confidence 122567899999999999999988764 89999999999999999999999988 89999999999
Q ss_pred ccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccchhhhcc
Q 005605 356 ETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFNN 423 (688)
Q Consensus 356 e~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~~~ 423 (688)
..|+|-|+|++||+-+. |.+.+-|.|-.|||||. .+..|=..|++++-..
T Consensus 316 GMGVDKp~VRFViHW~~------------------~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~ 366 (641)
T KOG0352|consen 316 GMGVDKPDVRFVIHWSP------------------SQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNA 366 (641)
T ss_pred ccccCCcceeEEEecCc------------------hhhhHHHHHhccccccCCCccceeeeecccchHH
Confidence 99999999999999665 89999999999999999 6778877777766543
No 92
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.81 E-value=9.8e-20 Score=202.65 Aligned_cols=290 Identities=16% Similarity=0.180 Sum_probs=169.3
Q ss_pred EEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhcccccceecee---eeecc---ccc
Q 005605 86 LVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYS---IRFED---CSS 159 (688)
Q Consensus 86 i~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~---~~~~~---~~~ 159 (688)
+.|+||||||..+...+..-. .. ..+.++++|+ ...+.+.++++.+..+..+....+.. .+.+. ...
T Consensus 2 L~g~TGsGKT~v~l~~i~~~l--~~--g~~vLvlvP~---i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~ 74 (505)
T TIGR00595 2 LFGVTGSGKTEVYLQAIEKVL--AL--GKSVLVLVPE---IALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKN 74 (505)
T ss_pred ccCCCCCCHHHHHHHHHHHHH--Hc--CCeEEEEeCc---HHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHc
Confidence 679999999998765543221 11 1224444444 44445556667665544332222211 01000 111
Q ss_pred ccccccccCHHHHHHHHhccccccCCcEEeecccCcChhhHHHHH----HHHHHHHhcCCCcEEEEecccccHHHHHchh
Q 005605 160 ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLF----GLLKEVLKNRPDLKLVVMSATLEAEKFQGYF 235 (688)
Q Consensus 160 ~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEaher~~~~d~ll----~~l~~i~~~~~~~~vil~SAT~~~~~~~~~~ 235 (688)
....|.+.|.+.+. .-+.++++||+||.|..+...+... .-+..+.....+.++|++|||...+.+....
T Consensus 75 g~~~IVVGTrsalf------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~~ 148 (505)
T TIGR00595 75 GEILVVIGTRSALF------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNAK 148 (505)
T ss_pred CCCCEEECChHHHc------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHh
Confidence 23467777877552 1378899999999996554332210 0111222333478999999999877766543
Q ss_pred cCC-CeeeeCCc----ccccceeecCCCch----hHHHHHHHHHHHHHhcCCCCCEEEecCcHHH---------------
Q 005605 236 YGA-PLMKVPGR----LHPVEIFYTQEPER----DYLEAAIRTVVQIHMCEPSGDILVFLTGEEE--------------- 291 (688)
Q Consensus 236 ~~~-p~~~v~g~----~~~v~~~~~~~~~~----~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~--------------- 291 (688)
.+. ..+..+.+ ..| .+........ .....+++.+.+... .++++|||+|++.-
T Consensus 149 ~g~~~~~~l~~r~~~~~~p-~v~vid~~~~~~~~~ls~~l~~~i~~~l~--~g~qvLvflnrrGya~~~~C~~Cg~~~~C 225 (505)
T TIGR00595 149 QKAYRLLVLTRRVSGRKPP-EVKLIDMRKEPRQSFLSPELITAIEQTLA--AGEQSILFLNRRGYSKNLLCRSCGYILCC 225 (505)
T ss_pred cCCeEEeechhhhcCCCCC-eEEEEecccccccCCccHHHHHHHHHHHH--cCCcEEEEEeCCcCCCeeEhhhCcCccCC
Confidence 321 12222221 111 1111111100 111223444444332 35689999876532
Q ss_pred ---------------------------------------------HHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHH
Q 005605 292 ---------------------------------------------IEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAM 326 (688)
Q Consensus 292 ---------------------------------------------i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~ 326 (688)
++.+.+.|.+.+ ++..+..+|++++..+
T Consensus 226 ~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~f-------p~~~v~~~d~d~~~~~ 298 (505)
T TIGR00595 226 PNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLF-------PGARIARIDSDTTSRK 298 (505)
T ss_pred CCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhC-------CCCcEEEEecccccCc
Confidence 466666666542 5789999999998776
Q ss_pred h--hcccCCCCCCCCCCCCCceEEEEecCccccCcccCCeEEE--EcCCcccceeecCCCCcccceeeecchhhHHhhcc
Q 005605 327 Q--QKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYV--IDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSG 402 (688)
Q Consensus 327 r--~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~V--Id~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~G 402 (688)
+ +++++.|++| ...|||+|+++++|+|+|+|++| +|.|..- +-|..... --....+.|++|
T Consensus 299 ~~~~~~l~~f~~g-------~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l---~~pd~ra~-----E~~~~ll~q~~G 363 (505)
T TIGR00595 299 GAHEALLNQFANG-------KADILIGTQMIAKGHHFPNVTLVGVLDADSGL---HSPDFRAA-----ERGFQLLTQVAG 363 (505)
T ss_pred cHHHHHHHHHhcC-------CCCEEEeCcccccCCCCCcccEEEEEcCcccc---cCcccchH-----HHHHHHHHHHHh
Confidence 6 8899999998 88999999999999999999987 5766410 00100000 123467899999
Q ss_pred ccCCC-CCceEE
Q 005605 403 RAGRT-QPGKCF 413 (688)
Q Consensus 403 RaGR~-~~G~~~ 413 (688)
||||. .+|.++
T Consensus 364 RagR~~~~g~vi 375 (505)
T TIGR00595 364 RAGRAEDPGQVI 375 (505)
T ss_pred ccCCCCCCCEEE
Confidence 99998 789888
No 93
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.78 E-value=1.1e-17 Score=189.69 Aligned_cols=435 Identities=18% Similarity=0.200 Sum_probs=260.9
Q ss_pred CChHHHHHHHHhcCCCChHHHHHHHHHH-hcCCEEEEEeCCCCChhcchhHHHhcCccCCCc-cc---cCceEEEEcCCc
Q 005605 51 YSQRYYEILEKRKSLPVWQQKEEFLQVL-KANQVIILVGETGSGKTTQIPQFVLEGVDIETP-DR---RRKMMIACTQPR 125 (688)
Q Consensus 51 l~~~~~~~l~~~~~lp~~~~q~~ii~~i-~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~-~~---~~~~~i~~t~p~ 125 (688)
++.+...+.. |......+|..+.++. ...+++.++||||+|||-....-+++....... .. .....|+..-|.
T Consensus 296 lP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPm 373 (1674)
T KOG0951|consen 296 LPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPM 373 (1674)
T ss_pred Ccchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeH
Confidence 4444444433 3334778899998875 455689999999999998665555544311110 00 111234444454
Q ss_pred hhhhccHHHHHHH---hhcccccceeceeeeecccccccccccccCHHHHHHHHhc----cccccCCcEEeecccCcChh
Q 005605 126 RVAAMSVSRRVAE---EMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMT----DPLLERYKVIVLDEAHERTL 198 (688)
Q Consensus 126 ~~~~~~v~~~v~~---~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~----~~ll~~~~~lIlDEaher~~ 198 (688)
...+.++...+++ .+++++++..|-+-. .......+.+.++||..- +++.. +...+-++.+|+||.|+..-
T Consensus 374 KaLvqE~VgsfSkRla~~GI~V~ElTgD~~l-~~~qieeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIHLLhD 451 (1674)
T KOG0951|consen 374 KALVQEMVGSFSKRLAPLGITVLELTGDSQL-GKEQIEETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIHLLHD 451 (1674)
T ss_pred HHHHHHHHHHHHhhccccCcEEEEecccccc-hhhhhhcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhhhccc
Confidence 4444444444443 346666666653211 111234577777887643 33322 23467889999999997544
Q ss_pred hHHHHH-HHH----HHHHhcCCCcEEEEecccc-cHHHHHchhcCCC--eeee--CCcccccceeecCCCchhHHH---H
Q 005605 199 ATDVLF-GLL----KEVLKNRPDLKLVVMSATL-EAEKFQGYFYGAP--LMKV--PGRLHPVEIFYTQEPERDYLE---A 265 (688)
Q Consensus 199 ~~d~ll-~~l----~~i~~~~~~~~vil~SAT~-~~~~~~~~~~~~p--~~~v--~g~~~~v~~~~~~~~~~~~~~---~ 265 (688)
+.+-.+ .+. ++......+.+++.+|||+ +-+..+.|+.-.+ ++.. .=|.-|+++.|+.....+.+. +
T Consensus 452 dRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qa 531 (1674)
T KOG0951|consen 452 DRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQA 531 (1674)
T ss_pred ccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHH
Confidence 444433 222 2222233478999999999 4455555543222 1111 113446777777655443322 2
Q ss_pred HHHHHH-HHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhh-----------------c---C--------CCCCCeEEE
Q 005605 266 AIRTVV-QIHMCEPSGDILVFLTGEEEIEDACRKITKEITN-----------------M---G--------DQVGPVKVV 316 (688)
Q Consensus 266 ~~~~l~-~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~-----------------~---~--------~~~~~~~v~ 316 (688)
.-+..+ ++......+++|||+.+++|..+.|+.++..... + . .+.-++.+.
T Consensus 532 mNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfa 611 (1674)
T KOG0951|consen 532 MNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFA 611 (1674)
T ss_pred HHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccce
Confidence 222222 2333345689999999999999999999844310 0 0 012246688
Q ss_pred EecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhh
Q 005605 317 PLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKAS 396 (688)
Q Consensus 317 ~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~ 396 (688)
.+|++|+..+|..+.+-|..| .++|+++|-..+.|+..|.=+++| ....+|||..|.-. +.|.-+
T Consensus 612 IHhAGl~R~dR~~~EdLf~~g-------~iqvlvstatlawgvnlpahtVii----kgtqvy~pekg~w~----elsp~d 676 (1674)
T KOG0951|consen 612 IHHAGLNRKDRELVEDLFADG-------HIQVLVSTATLAWGVNLPAHTVII----KGTQVYDPEKGRWT----ELSPLD 676 (1674)
T ss_pred eeccCCCcchHHHHHHHHhcC-------ceeEEEeehhhhhhcCCCcceEEe----cCccccCcccCccc----cCCHHH
Confidence 899999999999999999999 999999999999999999988888 34578999988654 788899
Q ss_pred HHhhccccCCCC-----CceEEEccchhhhcccCCCCC--CCcccccCcHHHHHHHHHcCCCCCcc-ccC----------
Q 005605 397 AHQRSGRAGRTQ-----PGKCFRLYTEKSFNNDLQPQT--YPEILRSNLANTVLTLKKLGIDDLVH-FDF---------- 458 (688)
Q Consensus 397 ~~qR~GRaGR~~-----~G~~~~l~t~~~~~~~l~~~~--~pei~r~~l~~~~L~l~~~~~~~~~~-f~~---------- 458 (688)
-+||.|||||.+ .|+.++=+++-.|.-.+-..+ +++-.-..|.+-+=.-+.+|+....+ .+|
T Consensus 677 v~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~Gv~~~~d~~~wl~yTylyvRm 756 (1674)
T KOG0951|consen 677 VMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLGVRSARDAVDWLGYTYLYVRM 756 (1674)
T ss_pred HHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcchhhHHHHHhhhcceeeEEee
Confidence 999999999983 355555555544433222222 22222222222221222333322111 011
Q ss_pred C-------------CCCcH----HHHHHHHHHHHHcCCccCC---C--CcChhhhhcccCCCChhhhh
Q 005605 459 M-------------DPPAP----ETLMRALEVLNYLGALDDD---G--NLTEMGEKMSEFPLDPQMSK 504 (688)
Q Consensus 459 ~-------------~~P~~----~~i~~a~~~L~~lgald~~---~--~lT~lG~~~~~lpl~p~~~k 504 (688)
+ |++.. +-+..|...|...|.|--+ | ..|.+|+.-+.+.+.-.-..
T Consensus 757 ~~~p~ly~~~~~~~d~~le~~r~~lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~ 824 (1674)
T KOG0951|consen 757 VRNPTLYGVSPEASDRLLEQRRADLVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMA 824 (1674)
T ss_pred ccCchhccCCcccchHHHHHHHhhhHHHHHhhHhhcCccccccccCcccchhhccccceeeeecchHH
Confidence 1 11211 4566788888888887433 3 67999999999988544433
No 94
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.76 E-value=4.8e-19 Score=154.37 Aligned_cols=91 Identities=49% Similarity=0.850 Sum_probs=66.9
Q ss_pred HHHHHHHHcCCccCCCCcChhhhhcccCCCChhhhhhhhhcCCCCChHHHHHHHHHhcCCCCCCCChHHHHHH--HHHHH
Q 005605 469 RALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKAA--DEAKA 546 (688)
Q Consensus 469 ~a~~~L~~lgald~~~~lT~lG~~~~~lpl~p~~~k~ll~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~--~~~~~ 546 (688)
.|++.|+.+||||++|+||++|+.|+.||++|++||||+.|..++|.+++++|||+|+++++|..+.+.++.. ...+.
T Consensus 1 ~A~~~L~~Lgald~~~~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~~~~f~~~~~~~~~~~~~~~~~ 80 (102)
T PF04408_consen 1 KALELLKSLGALDENGNLTPLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSVRSPFINPDDKEENAEQDNAKK 80 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B-HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTSS--B---CCGHHHHHH--HHH
T ss_pred CHHHHHHHCCCCCCCCCcCHHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcCCCcccCccHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999999875433222 12333
Q ss_pred H---------hCCCCCcHHHHH
Q 005605 547 R---------FGHIDGDHLTLL 559 (688)
Q Consensus 547 ~---------~~~~~sD~~~~l 559 (688)
+ +.+..|||+++|
T Consensus 81 ~~~~~~~~~~~~~~~sDhltlL 102 (102)
T PF04408_consen 81 KFRIKQARKKFSDDESDHLTLL 102 (102)
T ss_dssp TT----------BTTBHHHHHH
T ss_pred HhhhhhcccccCCCCCCHHhcC
Confidence 3 466889999986
No 95
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.76 E-value=1e-17 Score=195.92 Aligned_cols=120 Identities=12% Similarity=0.128 Sum_probs=100.7
Q ss_pred HHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEE
Q 005605 269 TVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKI 348 (688)
Q Consensus 269 ~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kv 348 (688)
.+..+.......++|||+.++..++.+.+.|... .++.+..+||+|++.+|.++++.|..+. +..+|
T Consensus 483 ~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~--------~Gi~~~~ihG~~s~~eR~~~~~~F~~~~-----~~~~V 549 (956)
T PRK04914 483 WLIDFLKSHRSEKVLVICAKAATALQLEQALRER--------EGIRAAVFHEGMSIIERDRAAAYFADEE-----DGAQV 549 (956)
T ss_pred HHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc--------cCeeEEEEECCCCHHHHHHHHHHHhcCC-----CCccE
Confidence 4455555455678999999999999999999653 3799999999999999999999998641 04789
Q ss_pred EEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCce--EEEccchh
Q 005605 349 VVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGK--CFRLYTEK 419 (688)
Q Consensus 349 lvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~--~~~l~t~~ 419 (688)
+|||+++++|+|++.+++||+|++ |.+.+.|+||+||+||. +.|. +|.++.+.
T Consensus 550 LIsTdvgseGlNlq~a~~VInfDl------------------P~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~ 605 (956)
T PRK04914 550 LLCSEIGSEGRNFQFASHLVLFDL------------------PFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEG 605 (956)
T ss_pred EEechhhccCCCcccccEEEEecC------------------CCCHHHHHHHhcccccCCCCceEEEEEccCCC
Confidence 999999999999999999999999 99999999999999998 5554 44554443
No 96
>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO). In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.76 E-value=9.7e-19 Score=156.32 Aligned_cols=96 Identities=39% Similarity=0.704 Sum_probs=73.5
Q ss_pred HHHHHHHHHcCCcccCCCC---------CCcchHHHHHHHHHhccccceeEecCCCcEEEeecCeEEEECCCCCC-CCCC
Q 005605 593 QQLVRIMARFNLKLCSNDF---------NSRDYYVNIRKAMLAGYFMQVAHLERTGQYLTVKDNQVVHLHPSNCL-DHKP 662 (688)
Q Consensus 593 ~qL~~~l~~~~~~~~~~~~---------~~~~~~~~i~~~l~~g~~~niA~~~~~~~y~~~~~~~~~~ihpsS~l-~~~~ 662 (688)
+||.++|++.|+...+... ....+...|++||++|||||+|++.+++.|+++.++..++|||+|++ ..+|
T Consensus 1 ~QL~~il~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~aG~~~nvA~~~~~~~y~~~~~~~~v~iHPsS~l~~~~p 80 (114)
T PF07717_consen 1 KQLLRILERIGFVPQSASSQSISQRPPNENRDQWELIRAALCAGFYPNVARRDNKGSYKTLSNGQPVFIHPSSVLFKKPP 80 (114)
T ss_dssp HHHHHHHHHTT----------TTST-----HTHCHHHHHHHHHHHCCCEEEE-TTSSEEETTTG-EEEE-TTSTTTTTT-
T ss_pred CHHHHHHHHcCCCCCccccccccccccccccccHHHHHHHHHHhhhhheEEeCCCCCEEEecCCCEEEEecCcccccccc
Confidence 5899999999886643211 01145678999999999999999998889999988889999999998 6678
Q ss_pred CEEEEEeeeccccceeeeccccCCCC
Q 005605 663 EWVIYNEYVLTSRNFIRTVTDVRGEW 688 (688)
Q Consensus 663 ~~vvy~e~~~t~k~y~r~vt~i~~~W 688 (688)
+||||+|++.|+|.|||+||+|+|+|
T Consensus 81 ~~vvy~e~~~t~k~y~~~~t~I~~~w 106 (114)
T PF07717_consen 81 KWVVYHELVRTSKPYMRDVTAISPEW 106 (114)
T ss_dssp SEEEEEEEEESSSEEEEEEEE--HHH
T ss_pred ccchhhhheecCCcEEEECcCCCHHH
Confidence 99999999999999999999999998
No 97
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=2.7e-17 Score=186.61 Aligned_cols=108 Identities=19% Similarity=0.195 Sum_probs=98.7
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCcccc
Q 005605 278 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAET 357 (688)
Q Consensus 278 ~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~ 357 (688)
.+.++|||+++.+..+.+++.|.+. ++....|||.+.+.++..+.+.+++| .|+||||+|+|
T Consensus 439 ~g~pvLI~t~si~~se~ls~~L~~~---------gi~~~~Lna~~~~~Ea~ii~~ag~~g---------~VtIATnmAGR 500 (796)
T PRK12906 439 KGQPVLVGTVAIESSERLSHLLDEA---------GIPHAVLNAKNHAKEAEIIMNAGQRG---------AVTIATNMAGR 500 (796)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHC---------CCCeeEecCCcHHHHHHHHHhcCCCc---------eEEEEeccccC
Confidence 4668999999999999999999874 68889999999999999988888877 59999999999
Q ss_pred Cccc---CCeE-----EEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccchhhh
Q 005605 358 SLTI---DGIV-----YVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (688)
Q Consensus 358 gi~i---~~V~-----~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (688)
|+|| ++|. |||++.+ |.|...+.||.|||||. .||.+..+++-++.
T Consensus 501 GtDI~l~~~V~~~GGLhVI~te~------------------pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 501 GTDIKLGPGVKELGGLAVIGTER------------------HESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred CCCCCCCcchhhhCCcEEEeeec------------------CCcHHHHHHHhhhhccCCCCcceEEEEeccch
Confidence 9999 5999 9999999 99999999999999999 89999999887653
No 98
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.73 E-value=9.4e-17 Score=161.62 Aligned_cols=325 Identities=16% Similarity=0.197 Sum_probs=205.6
Q ss_pred CCCCCChHHHHHHHHhcCC-CChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCc
Q 005605 47 NGKPYSQRYYEILEKRKSL-PVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPR 125 (688)
Q Consensus 47 ~~~~l~~~~~~~l~~~~~l-p~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~ 125 (688)
++++.|....++|++.--| ...|.|.+.|.+...|+++.++-|||-|||+.+.+|.+-.. .-.++|.|.-.+
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~ad-------g~alvi~plisl 146 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCAD-------GFALVICPLISL 146 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhcC-------CceEeechhHHH
Confidence 5667788888888776433 45567999999999999999999999999998877665322 113444443322
Q ss_pred hhhhccHHHHHHHhhcccccceec-----eeeeecc-ccc--ccccccccCHHHHHHH--H---hcccc-ccCCcEEeec
Q 005605 126 RVAAMSVSRRVAEEMDVTIGEEVG-----YSIRFED-CSS--ARTVLKYLTDGMLLRE--A---MTDPL-LERYKVIVLD 191 (688)
Q Consensus 126 ~~~~~~v~~~v~~~~~~~~~~~vg-----~~~~~~~-~~~--~~~~i~~lT~G~l~~~--~---~~~~l-l~~~~~lIlD 191 (688)
....+-+.+ .+++.....-. ...+.+. ... ..-++.|+||..+... + +..++ ..-++.+-+|
T Consensus 147 medqil~lk----qlgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaid 222 (695)
T KOG0353|consen 147 MEDQILQLK----QLGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAID 222 (695)
T ss_pred HHHHHHHHH----HhCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeec
Confidence 221111111 12211100000 0000010 011 1234568898876442 1 12223 5667899999
Q ss_pred ccCcChhhHHHH---HHHHHHHHhcCCCcEEEEecccccHHHH---HchhcCCCeee-eCCcccccceeec----CCCch
Q 005605 192 EAHERTLATDVL---FGLLKEVLKNRPDLKLVVMSATLEAEKF---QGYFYGAPLMK-VPGRLHPVEIFYT----QEPER 260 (688)
Q Consensus 192 Eaher~~~~d~l---l~~l~~i~~~~~~~~vil~SAT~~~~~~---~~~~~~~p~~~-v~g~~~~v~~~~~----~~~~~ 260 (688)
|+|.-+.+...+ ...|..+.++.++..+|-++||.....+ .+.+.-...+. -.|...| ..+|. +....
T Consensus 223 evhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~-nl~yev~qkp~n~d 301 (695)
T KOG0353|consen 223 EVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRP-NLKYEVRQKPGNED 301 (695)
T ss_pred ceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCC-CceeEeeeCCCChH
Confidence 999655553321 2233333445678889999998732221 12111000000 1122111 12222 12223
Q ss_pred hHHHHHHHHHHHHHhcC-CCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCC
Q 005605 261 DYLEAAIRTVVQIHMCE-PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSK 339 (688)
Q Consensus 261 ~~~~~~~~~l~~i~~~~-~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~ 339 (688)
+..+. +.+..... .+..-||+|=++++++.++..|... ++..-.+|+.|.++++..+-+..-.|
T Consensus 302 d~~ed----i~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~---------gi~a~~yha~lep~dks~~hq~w~a~-- 366 (695)
T KOG0353|consen 302 DCIED----IAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNH---------GIHAGAYHANLEPEDKSGAHQGWIAG-- 366 (695)
T ss_pred HHHHH----HHHHhccccCCCcceEEEeccccHHHHHHHHHhc---------CccccccccccCcccccccccccccc--
Confidence 33333 33333222 2335689999999999999999874 78999999999999999999999888
Q ss_pred CCCCCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHh--------------------
Q 005605 340 EGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQ-------------------- 399 (688)
Q Consensus 340 ~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~q-------------------- 399 (688)
...|||||-....|||-|||++||+-.+ |.|.++|.|
T Consensus 367 -----eiqvivatvafgmgidkpdvrfvihhsl------------------~ksienyyqasarillrmtkqknksdtgg 423 (695)
T KOG0353|consen 367 -----EIQVIVATVAFGMGIDKPDVRFVIHHSL------------------PKSIENYYQASARILLRMTKQKNKSDTGG 423 (695)
T ss_pred -----ceEEEEEEeeecccCCCCCeeEEEeccc------------------chhHHHHHHHHHHHHHHHhhhcccccCCC
Confidence 8999999999999999999999999888 899999999
Q ss_pred -----------------------hccccCCC-CCceEEEccchhhh
Q 005605 400 -----------------------RSGRAGRT-QPGKCFRLYTEKSF 421 (688)
Q Consensus 400 -----------------------R~GRaGR~-~~G~~~~l~t~~~~ 421 (688)
..|||||. .+..|+..|.-.+.
T Consensus 424 stqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~di 469 (695)
T KOG0353|consen 424 STQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADI 469 (695)
T ss_pred cceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHH
Confidence 88999999 88999988875543
No 99
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.71 E-value=3e-16 Score=187.57 Aligned_cols=320 Identities=19% Similarity=0.244 Sum_probs=177.7
Q ss_pred CChHHHHHHHHHHh----c-CCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhh
Q 005605 66 PVWQQKEEFLQVLK----A-NQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (688)
Q Consensus 66 p~~~~q~~ii~~i~----~-g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (688)
.+.++|.+++..+. + .+..+++.+||||||......+..- +......+.++++....+..|+...........
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L--~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~ 490 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRL--LKAKRFRRILFLVDRSALGEQAEDAFKDTKIEG 490 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHH--HhcCccCeEEEEecHHHHHHHHHHHHHhccccc
Confidence 46778998887664 3 3567888999999995433222110 111011223344444444445444333221111
Q ss_pred cccccceeceeeeecccccccccccccCHHHHHHHHhcc------ccccCCcEEeecccCcChhhHH-------------
Q 005605 141 DVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTD------PLLERYKVIVLDEAHERTLATD------------- 201 (688)
Q Consensus 141 ~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~------~ll~~~~~lIlDEaher~~~~d------------- 201 (688)
........+...-.+........|.+.|-..+.+..... ..+..+++||+|||| |+...|
T Consensus 491 ~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaH-Rs~~~d~~~~~~~~~~~~~ 569 (1123)
T PRK11448 491 DQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAH-RGYTLDKEMSEGELQFRDQ 569 (1123)
T ss_pred ccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCC-CCCccccccccchhccchh
Confidence 101111111100001111234677788877665543211 236788999999999 553211
Q ss_pred -HHHHHHHHHHhcCCCcEEEEecccccHHHHHchhcCCCeeee-------CCccc----ccc---------eeecCC---
Q 005605 202 -VLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPLMKV-------PGRLH----PVE---------IFYTQE--- 257 (688)
Q Consensus 202 -~ll~~l~~i~~~~~~~~vil~SAT~~~~~~~~~~~~~p~~~v-------~g~~~----~v~---------~~~~~~--- 257 (688)
......+.++.. .+...|.+|||..-. -.++|+ .|+... .|.+- |+. +.|...
T Consensus 570 ~~~~~~yr~iL~y-FdA~~IGLTATP~r~-t~~~FG-~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~ 646 (1123)
T PRK11448 570 LDYVSKYRRVLDY-FDAVKIGLTATPALH-TTEIFG-EPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEV 646 (1123)
T ss_pred hhHHHHHHHHHhh-cCccEEEEecCCccc-hhHHhC-CeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchh
Confidence 012333444442 356789999998532 234454 233211 12111 100 000000
Q ss_pred ---------------Cch-hH--------------HHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcC
Q 005605 258 ---------------PER-DY--------------LEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMG 307 (688)
Q Consensus 258 ---------------~~~-~~--------------~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~ 307 (688)
+.. ++ ....+..+.+......++++|||+.+.+.++.+++.|.+.+....
T Consensus 647 ~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~ 726 (1123)
T PRK11448 647 EVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKY 726 (1123)
T ss_pred hhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhc
Confidence 000 00 001112222222223458999999999999999999887543221
Q ss_pred CCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccc
Q 005605 308 DQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESL 387 (688)
Q Consensus 308 ~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l 387 (688)
.......+..+||+.+ ++..+++.|+++. ..+|+|+++++.||+|+|.|.+||-...
T Consensus 727 ~~~~~~~v~~itg~~~--~~~~li~~Fk~~~------~p~IlVsvdmL~TG~DvP~v~~vVf~rp--------------- 783 (1123)
T PRK11448 727 GQVEDDAVIKITGSID--KPDQLIRRFKNER------LPNIVVTVDLLTTGIDVPSICNLVFLRR--------------- 783 (1123)
T ss_pred CCcCccceEEEeCCcc--chHHHHHHHhCCC------CCeEEEEecccccCCCcccccEEEEecC---------------
Confidence 1122335667899875 4567889998761 2379999999999999999999997555
Q ss_pred eeeecchhhHHhhccccCCCCC--ce-EEEccc
Q 005605 388 LVSPISKASAHQRSGRAGRTQP--GK-CFRLYT 417 (688)
Q Consensus 388 ~~~p~s~~~~~qR~GRaGR~~~--G~-~~~l~t 417 (688)
+.|...|+|++||+.|..+ |+ ++.+|+
T Consensus 784 ---vkS~~lf~QmIGRgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 784 ---VRSRILYEQMLGRATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred ---CCCHHHHHHHHhhhccCCccCCCceEEEEe
Confidence 7899999999999999976 44 555555
No 100
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.70 E-value=2.9e-16 Score=181.07 Aligned_cols=325 Identities=18% Similarity=0.201 Sum_probs=213.3
Q ss_pred CChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhccccc
Q 005605 66 PVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIG 145 (688)
Q Consensus 66 p~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~ 145 (688)
.+.++|++.+..|..|+-|++++|||||||..---.+.... .. +-.++.|.|.....-+.+..+....+.- .
T Consensus 119 ~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al--~~-----~qrviYTsPIKALsNQKyrdl~~~fgdv-~ 190 (1041)
T COG4581 119 ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALAL--RD-----GQRVIYTSPIKALSNQKYRDLLAKFGDV-A 190 (1041)
T ss_pred CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHH--Hc-----CCceEeccchhhhhhhHHHHHHHHhhhh-h
Confidence 56789999999999999999999999999975332221111 11 1126678887766666666666655522 3
Q ss_pred ceeceeeeecccccccccccccCHHHHHHHHhcc-ccccCCcEEeecccCc-ChhhHHHHHHHHHHHHhcCCCcEEEEec
Q 005605 146 EEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTD-PLLERYKVIVLDEAHE-RTLATDVLFGLLKEVLKNRPDLKLVVMS 223 (688)
Q Consensus 146 ~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~-~ll~~~~~lIlDEahe-r~~~~d~ll~~l~~i~~~~~~~~vil~S 223 (688)
..+|...+ +-....+..+.++|+.++..++..+ ..+.++.+||+||+|- +..+.+...+..-.. ..++.++|++|
T Consensus 191 ~~vGL~TG-Dv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~--lP~~v~~v~LS 267 (1041)
T COG4581 191 DMVGLMTG-DVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIIL--LPDHVRFVFLS 267 (1041)
T ss_pred hhccceec-ceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHh--cCCCCcEEEEe
Confidence 34453322 2223456778889998887777776 4599999999999993 112222233322222 23368999999
Q ss_pred ccc-cHHHHHchhc-----CCCeeeeCCcccccceeecCCC--------chhHHHH----HHHH----------------
Q 005605 224 ATL-EAEKFQGYFY-----GAPLMKVPGRLHPVEIFYTQEP--------ERDYLEA----AIRT---------------- 269 (688)
Q Consensus 224 AT~-~~~~~~~~~~-----~~p~~~v~g~~~~v~~~~~~~~--------~~~~~~~----~~~~---------------- 269 (688)
||+ +++.|+.|+. ++-++..+-|.-|.+++|.... ..+.... +...
T Consensus 268 ATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~ 347 (1041)
T COG4581 268 ATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDV 347 (1041)
T ss_pred CCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCcccc
Confidence 999 7899999986 2334445556667666665431 0000000 0000
Q ss_pred ----------------------HHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHH-------------------HhhcCC
Q 005605 270 ----------------------VVQIHMCEPSGDILVFLTGEEEIEDACRKITKE-------------------ITNMGD 308 (688)
Q Consensus 270 ----------------------l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~-------------------~~~~~~ 308 (688)
+........--+++||+=++.+|+..+..+... +..+..
T Consensus 348 ~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ 427 (1041)
T COG4581 348 GRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAE 427 (1041)
T ss_pred ccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcCh
Confidence 111111123347999999999999998887521 011111
Q ss_pred CCCCe-------------EEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCcccCCeEEEEcCCcccc
Q 005605 309 QVGPV-------------KVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQ 375 (688)
Q Consensus 309 ~~~~~-------------~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~ 375 (688)
...++ -+..+|++|=+..+..+..-|..| -+||++||.+.+-||..|.-++|+ +++.|
T Consensus 428 ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~G-------LvkvvFaTeT~s~GiNmPartvv~-~~l~K- 498 (1041)
T COG4581 428 EDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEG-------LVKVVFATETFAIGINMPARTVVF-TSLSK- 498 (1041)
T ss_pred hhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhcc-------ceeEEeehhhhhhhcCCcccceee-eeeEE-
Confidence 11111 133789999999999999999999 899999999999999999666665 55544
Q ss_pred eeecCCCCcccceeeecchhhHHhhccccCCC---CCceEEEccch
Q 005605 376 KVYNPRVRVESLLVSPISKASAHQRSGRAGRT---QPGKCFRLYTE 418 (688)
Q Consensus 376 ~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~---~~G~~~~l~t~ 418 (688)
+|.. ...|.+..+|.|.+|||||. ..|.++...+.
T Consensus 499 --~dG~------~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 499 --FDGN------GHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred --ecCC------ceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 3321 12389999999999999998 46999988554
No 101
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.69 E-value=1.1e-16 Score=173.53 Aligned_cols=321 Identities=17% Similarity=0.215 Sum_probs=211.6
Q ss_pred CChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhccccc
Q 005605 66 PVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIG 145 (688)
Q Consensus 66 p~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~ 145 (688)
.+.+.|...|..+..++-|++.|.|-+|||...--.+-... .. .-.+++|.|-.....+-++.+..+.+ .+|
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sL--r~-----kQRVIYTSPIKALSNQKYREl~~EF~-DVG 200 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSL--RE-----KQRVIYTSPIKALSNQKYRELLEEFK-DVG 200 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHH--Hh-----cCeEEeeChhhhhcchhHHHHHHHhc-ccc
Confidence 45678999999999999999999999999985443332221 11 22377888876655566666666654 334
Q ss_pred ceeceeeeecccccccccccccCHHHHHHHHhccc-cccCCcEEeecccC-cChhhHHHHHHHHHHHHhcCCCcEEEEec
Q 005605 146 EEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDP-LLERYKVIVLDEAH-ERTLATDVLFGLLKEVLKNRPDLKLVVMS 223 (688)
Q Consensus 146 ~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~-ll~~~~~lIlDEah-er~~~~d~ll~~l~~i~~~~~~~~vil~S 223 (688)
...|-. ...++....++|+.+|..++-.+. .+.++.++|+||+| +|.-..+.+.+- .|.-..++.+.+++|
T Consensus 201 LMTGDV-----TInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEE--TIIllP~~vr~VFLS 273 (1041)
T KOG0948|consen 201 LMTGDV-----TINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEE--TIILLPDNVRFVFLS 273 (1041)
T ss_pred eeecce-----eeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeee--eEEeccccceEEEEe
Confidence 444421 233456677899999888776655 49999999999999 222223222111 111123478999999
Q ss_pred ccc-cHHHHHchhc-----CCCeeeeCCcccccceeecCC---------C-----chhHHHHHH----------------
Q 005605 224 ATL-EAEKFQGYFY-----GAPLMKVPGRLHPVEIFYTQE---------P-----ERDYLEAAI---------------- 267 (688)
Q Consensus 224 AT~-~~~~~~~~~~-----~~p~~~v~g~~~~v~~~~~~~---------~-----~~~~~~~~~---------------- 267 (688)
||+ ++.+|++|.- .|-++--+=|..|.+++..+. . ..+.+..+.
T Consensus 274 ATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~ 353 (1041)
T KOG0948|consen 274 ATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKAN 353 (1041)
T ss_pred ccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccc
Confidence 999 6888998863 233444444555665552221 0 011111111
Q ss_pred -------------------HHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHH------------------hhcCCCC
Q 005605 268 -------------------RTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEI------------------TNMGDQV 310 (688)
Q Consensus 268 -------------------~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~------------------~~~~~~~ 310 (688)
+.+..+.. ..-.++|||.=+++||+..+-.+.+.- ..+..+.
T Consensus 354 ~k~~kG~~~~~~~~~s~i~kiVkmi~~-~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeD 432 (1041)
T KOG0948|consen 354 KKGRKGGTGGKGPGDSDIYKIVKMIME-RNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEED 432 (1041)
T ss_pred cccccCCcCCCCCCcccHHHHHHHHHh-hcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhh
Confidence 22222222 234589999999999999998875431 1111110
Q ss_pred ---CC---------eEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCcccCCeEEEEcCCcccceee
Q 005605 311 ---GP---------VKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVY 378 (688)
Q Consensus 311 ---~~---------~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~ 378 (688)
|. -.+..+||+|-+--.+.+.=-|.+| -.|+++||...+-|++.|.-++|. ...+.|
T Consensus 433 r~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEG-------LvKvLFATETFsiGLNMPAkTVvF----T~~rKf 501 (1041)
T KOG0948|consen 433 RELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEG-------LVKVLFATETFSIGLNMPAKTVVF----TAVRKF 501 (1041)
T ss_pred ccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhcc-------HHHHHHhhhhhhhccCCcceeEEE----eecccc
Confidence 10 1255679999887777766668888 899999999999999999887776 334455
Q ss_pred cCCCCcccceeeecchhhHHhhccccCCC---CCceEEEccchh
Q 005605 379 NPRVRVESLLVSPISKASAHQRSGRAGRT---QPGKCFRLYTEK 419 (688)
Q Consensus 379 ~~~~~~~~l~~~p~s~~~~~qR~GRaGR~---~~G~~~~l~t~~ 419 (688)
|.. ...|+|--+|+|.+|||||. ..|+|+.+.++.
T Consensus 502 DG~------~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 502 DGK------KFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred CCc------ceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 543 23499999999999999998 479999998864
No 102
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.68 E-value=4.8e-17 Score=139.43 Aligned_cols=90 Identities=56% Similarity=0.879 Sum_probs=80.8
Q ss_pred HHHHHHHHcCCccCCCCcChhhhhcccCCCChhhhhhhhhcCCC-CChHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHH
Q 005605 469 RALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKY-NCSNEILSISAMLSVPNCFVRPREAQKAADEAKAR 547 (688)
Q Consensus 469 ~a~~~L~~lgald~~~~lT~lG~~~~~lpl~p~~~k~ll~~~~~-~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~~~~ 547 (688)
.|++.|+.+||||.+|+||++|+.|+.||++|++||||+.|..+ +|.+++++|+|++++.++|..+ .........+..
T Consensus 1 ~A~~~L~~LgAld~~~~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~~~~~~~-~~~~~~~~~~~~ 79 (92)
T smart00847 1 AALELLYELGALDDDGRLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSVGDPFPRP-EKRAEADAARRR 79 (92)
T ss_pred CHHHHHHHCCCcCCCCCcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCcCCc-hHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999 8999999999999999998876 445566677788
Q ss_pred hCCC-CCcHHHHH
Q 005605 548 FGHI-DGDHLTLL 559 (688)
Q Consensus 548 ~~~~-~sD~~~~l 559 (688)
|... .|||++++
T Consensus 80 ~~~~~~~D~~~~l 92 (92)
T smart00847 80 FASGRESDHLTLL 92 (92)
T ss_pred ccCCCCCChhhhC
Confidence 8877 89999864
No 103
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.67 E-value=1.2e-15 Score=174.06 Aligned_cols=120 Identities=24% Similarity=0.223 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCC
Q 005605 263 LEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGG 342 (688)
Q Consensus 263 ~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~ 342 (688)
..+.+..+...|. .+.++|||+++.+..+.+++.|.+. ++....||+.+.+.+++.+.+.|++|
T Consensus 430 ~~av~~~i~~~~~--~g~PVLVgt~Sie~sE~ls~~L~~~---------gi~h~vLnak~~q~Ea~iia~Ag~~G----- 493 (896)
T PRK13104 430 FQAIIEDVRECGV--RKQPVLVGTVSIEASEFLSQLLKKE---------NIKHQVLNAKFHEKEAQIIAEAGRPG----- 493 (896)
T ss_pred HHHHHHHHHHHHh--CCCCEEEEeCcHHHHHHHHHHHHHc---------CCCeEeecCCCChHHHHHHHhCCCCC-----
Confidence 3445555555554 4568999999999999999999874 78999999999999999999999988
Q ss_pred CCceEEEEecCccccCcccCC--------------------------------------eEEEEcCCcccceeecCCCCc
Q 005605 343 PPGRKIVVSTNIAETSLTIDG--------------------------------------IVYVIDPGFAKQKVYNPRVRV 384 (688)
Q Consensus 343 ~~~~kvlvaTniae~gi~i~~--------------------------------------V~~VId~g~~k~~~~~~~~~~ 384 (688)
.|+||||+|+||+||.= =-|||=+..
T Consensus 494 ----~VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTer------------ 557 (896)
T PRK13104 494 ----AVTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSER------------ 557 (896)
T ss_pred ----cEEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeecc------------
Confidence 49999999999999861 124554444
Q ss_pred ccceeeecchhhHHhhccccCCC-CCceEEEccchhh
Q 005605 385 ESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKS 420 (688)
Q Consensus 385 ~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~ 420 (688)
+-|.--=.|=.|||||. .||.+-.+.|-++
T Consensus 558 ------hesrRID~QLrGRaGRQGDPGss~f~lSleD 588 (896)
T PRK13104 558 ------HESRRIDNQLRGRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred ------CchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 45555556889999999 8998877776544
No 104
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.66 E-value=2e-15 Score=166.17 Aligned_cols=288 Identities=20% Similarity=0.210 Sum_probs=181.8
Q ss_pred cCCCChHHHHHHHHHHhc----CCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHH
Q 005605 63 KSLPVWQQKEEFLQVLKA----NQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAE 138 (688)
Q Consensus 63 ~~lp~~~~q~~ii~~i~~----g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~ 138 (688)
....+.++|++.+..+.+ ++..+++.|||+|||......+-.-. ...++++++.++..|+. +.+..
T Consensus 33 ~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~-------~~~Lvlv~~~~L~~Qw~---~~~~~ 102 (442)
T COG1061 33 FEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK-------RSTLVLVPTKELLDQWA---EALKK 102 (442)
T ss_pred cCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc-------CCEEEEECcHHHHHHHH---HHHHH
Confidence 345678899999999888 88899999999999998877665432 12456666666655543 44444
Q ss_pred hhccc--ccceeceeeeeccccccc-ccccccCHHHHHHH-HhccccccCCcEEeecccCcChhhHHHHHHHHHHHHhcC
Q 005605 139 EMDVT--IGEEVGYSIRFEDCSSAR-TVLKYLTDGMLLRE-AMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNR 214 (688)
Q Consensus 139 ~~~~~--~~~~vg~~~~~~~~~~~~-~~i~~lT~G~l~~~-~~~~~ll~~~~~lIlDEaher~~~~d~ll~~l~~i~~~~ 214 (688)
..... +|. .|.. ..... ..+.+.|--.+.+. .+.....+++.+||+||+|. .-.+....++..+....
T Consensus 103 ~~~~~~~~g~-~~~~-----~~~~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh--~~a~~~~~~~~~~~~~~ 174 (442)
T COG1061 103 FLLLNDEIGI-YGGG-----EKELEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHH--LPAPSYRRILELLSAAY 174 (442)
T ss_pred hcCCccccce-ecCc-----eeccCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEcccc--CCcHHHHHHHHhhhccc
Confidence 43322 111 1111 11111 34667776666654 23333345799999999996 33333334444433332
Q ss_pred CCcEEEEeccccc------HHHHHchhcCCCeeee-------CCcccccceeecCC-----CchhHH-------------
Q 005605 215 PDLKLVVMSATLE------AEKFQGYFYGAPLMKV-------PGRLHPVEIFYTQE-----PERDYL------------- 263 (688)
Q Consensus 215 ~~~~vil~SAT~~------~~~~~~~~~~~p~~~v-------~g~~~~v~~~~~~~-----~~~~~~------------- 263 (688)
+ ++.+|||.. ...+..+++ ..+..+ .|..-|........ ....+.
T Consensus 175 ~---~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~ 250 (442)
T COG1061 175 P---RLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRAR 250 (442)
T ss_pred c---eeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhh
Confidence 2 899999962 122333332 112211 13222222211111 000000
Q ss_pred ----------------HHHHHHHHHHHhcC-CCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHH
Q 005605 264 ----------------EAAIRTVVQIHMCE-PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAM 326 (688)
Q Consensus 264 ----------------~~~~~~l~~i~~~~-~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~ 326 (688)
......+..+.... ...+++||+.....+..++..+.. ++. +..+.|..+..+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~---------~~~-~~~it~~t~~~e 320 (442)
T COG1061 251 GTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLA---------PGI-VEAITGETPKEE 320 (442)
T ss_pred hhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcC---------CCc-eEEEECCCCHHH
Confidence 00111122222222 355899999999999999888865 244 888999999999
Q ss_pred hhcccCCCCCCCCCCCCCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCC
Q 005605 327 QQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGR 406 (688)
Q Consensus 327 r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR 406 (688)
|..+++.|+.| ..++|+++.|+.-|+|+|++.++|-..= ..|...|.||+||.=|
T Consensus 321 R~~il~~fr~g-------~~~~lv~~~vl~EGvDiP~~~~~i~~~~------------------t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 321 REAILERFRTG-------GIKVLVTVKVLDEGVDIPDADVLIILRP------------------TGSRRLFIQRLGRGLR 375 (442)
T ss_pred HHHHHHHHHcC-------CCCEEEEeeeccceecCCCCcEEEEeCC------------------CCcHHHHHHHhhhhcc
Confidence 99999999998 7899999999999999999999885332 6789999999999999
Q ss_pred C
Q 005605 407 T 407 (688)
Q Consensus 407 ~ 407 (688)
.
T Consensus 376 ~ 376 (442)
T COG1061 376 P 376 (442)
T ss_pred C
Confidence 5
No 105
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.66 E-value=1.2e-15 Score=167.35 Aligned_cols=306 Identities=17% Similarity=0.193 Sum_probs=197.5
Q ss_pred CCChHHHHHHHHHHhcCC------EEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHH
Q 005605 65 LPVWQQKEEFLQVLKANQ------VIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAE 138 (688)
Q Consensus 65 lp~~~~q~~ii~~i~~g~------~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~ 138 (688)
..++.-|+.++..|...- +=+++|.-|||||......++...+- +.+...++||.-++.|...-+..+..
T Consensus 261 F~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~----G~Q~ALMAPTEILA~QH~~~~~~~l~ 336 (677)
T COG1200 261 FKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA----GYQAALMAPTEILAEQHYESLRKWLE 336 (677)
T ss_pred CCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc----CCeeEEeccHHHHHHHHHHHHHHHhh
Confidence 356777888877765431 23579999999998766555543311 12344567777666665555555556
Q ss_pred hhcccccceeceeeeec------ccccccccccccCHHHHHHHHhccccccCCcEEeecccCcChhhHHHHHHHHHHHHh
Q 005605 139 EMDVTIGEEVGYSIRFE------DCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLK 212 (688)
Q Consensus 139 ~~~~~~~~~vg~~~~~~------~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEaher~~~~d~ll~~l~~i~~ 212 (688)
..+..++-..|...... ...+....+.+.|...+++ ...+.+..++|+||=|.-.... - ..+..
T Consensus 337 ~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd----~V~F~~LgLVIiDEQHRFGV~Q--R----~~L~~ 406 (677)
T COG1200 337 PLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD----KVEFHNLGLVIIDEQHRFGVHQ--R----LALRE 406 (677)
T ss_pred hcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc----ceeecceeEEEEeccccccHHH--H----HHHHH
Confidence 66666665555322111 1122334555666554332 2238899999999998522111 1 12223
Q ss_pred cCC-CcEEEEecccccHHHHH-chhcCCCeeee---CCcccccceeecCCCchhHHHHHHHHHHHHHhcCCCCCEEEecC
Q 005605 213 NRP-DLKLVVMSATLEAEKFQ-GYFYGAPLMKV---PGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLT 287 (688)
Q Consensus 213 ~~~-~~~vil~SAT~~~~~~~-~~~~~~p~~~v---~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~ 287 (688)
+.. ...+++||||.=+..++ ..|++..+-.+ |.-..||..........+. .++.+..-.. .+.++-|-||
T Consensus 407 KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~---v~e~i~~ei~--~GrQaY~VcP 481 (677)
T COG1200 407 KGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHERRPE---VYERIREEIA--KGRQAYVVCP 481 (677)
T ss_pred hCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEEeccccHHH---HHHHHHHHHH--cCCEEEEEec
Confidence 333 46799999998665555 44555444333 3333588888877654443 2333333222 3557888888
Q ss_pred cHHHHH--------HHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCc
Q 005605 288 GEEEIE--------DACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSL 359 (688)
Q Consensus 288 ~~~~i~--------~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi 359 (688)
=.++-+ .+++.|... .+++++.-+||.|+.++.+.+++.|++| ...|+|||.|.|-||
T Consensus 482 LIeESE~l~l~~a~~~~~~L~~~-------~~~~~vgL~HGrm~~~eKd~vM~~Fk~~-------e~~ILVaTTVIEVGV 547 (677)
T COG1200 482 LIEESEKLELQAAEELYEELKSF-------LPELKVGLVHGRMKPAEKDAVMEAFKEG-------EIDILVATTVIEVGV 547 (677)
T ss_pred cccccccchhhhHHHHHHHHHHH-------cccceeEEEecCCChHHHHHHHHHHHcC-------CCcEEEEeeEEEecc
Confidence 665544 445555432 3688999999999999999999999999 899999999999999
Q ss_pred ccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccchhh
Q 005605 360 TIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKS 420 (688)
Q Consensus 360 ~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~ 420 (688)
|+||-++.|= +|+. .---++.-|=.||.||- .+..|+.+|....
T Consensus 548 dVPnATvMVI--------e~AE---------RFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 548 DVPNATVMVI--------ENAE---------RFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred cCCCCeEEEE--------echh---------hhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 9999987552 2222 23456677999999999 8899999998644
No 106
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.65 E-value=2.2e-15 Score=171.85 Aligned_cols=121 Identities=18% Similarity=0.163 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCC
Q 005605 262 YLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEG 341 (688)
Q Consensus 262 ~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~ 341 (688)
+..+++..+...+. ...++|||+++.+..+.+++.|.+. ++....|||. +.+|+..+..|..+
T Consensus 415 K~~aI~~~I~~~~~--~grpVLIft~Si~~se~Ls~~L~~~---------gi~~~vLnak--q~eREa~Iia~Ag~---- 477 (830)
T PRK12904 415 KFDAVVEDIKERHK--KGQPVLVGTVSIEKSELLSKLLKKA---------GIPHNVLNAK--NHEREAEIIAQAGR---- 477 (830)
T ss_pred HHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHC---------CCceEeccCc--hHHHHHHHHHhcCC----
Confidence 44445555544443 4568999999999999999999874 7889999995 78899999999887
Q ss_pred CCCceEEEEecCccccCcccCCe--------------------------------------EEEEcCCcccceeecCCCC
Q 005605 342 GPPGRKIVVSTNIAETSLTIDGI--------------------------------------VYVIDPGFAKQKVYNPRVR 383 (688)
Q Consensus 342 ~~~~~kvlvaTniae~gi~i~~V--------------------------------------~~VId~g~~k~~~~~~~~~ 383 (688)
...|+||||+|+||+||+== -|||-+..
T Consensus 478 ---~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTer----------- 543 (830)
T PRK12904 478 ---PGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTER----------- 543 (830)
T ss_pred ---CceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEeccc-----------
Confidence 78999999999999999731 24554444
Q ss_pred cccceeeecchhhHHhhccccCCC-CCceEEEccchhh
Q 005605 384 VESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKS 420 (688)
Q Consensus 384 ~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~ 420 (688)
+.|.--=.|=.|||||. .||.+-.+.|-++
T Consensus 544 -------hesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 544 -------HESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred -------CchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 66666667999999999 8999877777554
No 107
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.64 E-value=8.3e-16 Score=152.18 Aligned_cols=193 Identities=21% Similarity=0.209 Sum_probs=124.9
Q ss_pred CCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCC-ccccCceEEEEcCC
Q 005605 46 WNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIET-PDRRRKMMIACTQP 124 (688)
Q Consensus 46 f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~-~~~~~~~~i~~t~p 124 (688)
|+++++++.+.+.+.+.++..+++.|.++++.+.+|+++++.+|||+|||..+..+++....... ....+.++++|+..
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~ 80 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRE 80 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHH
Confidence 68899999999999999999999999999999999999999999999999988777765431110 11123444555544
Q ss_pred chhhhccHHHHHHHhhcccccceeceeeeeccc--ccccccccccCHHHHHHHHhcccc-ccCCcEEeecccCcChhhHH
Q 005605 125 RRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLATD 201 (688)
Q Consensus 125 ~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~~~~~~~~l-l~~~~~lIlDEaher~~~~d 201 (688)
+..+....++.+....+..+....|........ ...+..+.++|++.+.+.+..... +.+++++|+||+|. ..+.+
T Consensus 81 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~-~~~~~ 159 (203)
T cd00268 81 LALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADR-MLDMG 159 (203)
T ss_pred HHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHH-hhccC
Confidence 444444444444443344433333322111110 112556888999999888766654 88999999999995 22222
Q ss_pred HHHHHHHHHHhc-CCCcEEEEeccccc--HHHHHchhcCCCe
Q 005605 202 VLFGLLKEVLKN-RPDLKLVVMSATLE--AEKFQGYFYGAPL 240 (688)
Q Consensus 202 ~ll~~l~~i~~~-~~~~~vil~SAT~~--~~~~~~~~~~~p~ 240 (688)
+...+..+.+. .++.+++++|||++ .+.+..-+.+.|+
T Consensus 160 -~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~ 200 (203)
T cd00268 160 -FEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPV 200 (203)
T ss_pred -hHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCE
Confidence 22223322222 33789999999995 3444433434443
No 108
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.63 E-value=7e-15 Score=171.33 Aligned_cols=309 Identities=22% Similarity=0.235 Sum_probs=170.3
Q ss_pred CChHHHHHHHHHHhc---CC-EEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhc
Q 005605 66 PVWQQKEEFLQVLKA---NQ-VIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (688)
Q Consensus 66 p~~~~q~~ii~~i~~---g~-~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (688)
+.++.|..+...+.. .. .+++.+|||+|||++...+.+....-.. . . .-.++.+-|.+..+-...+++....+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~-~-~-~~r~i~vlP~~t~ie~~~~r~~~~~~ 271 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKI-K-L-KSRVIYVLPFRTIIEDMYRRAKEIFG 271 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccc-c-c-cceEEEEccHHHHHHHHHHHHHhhhc
Confidence 446666666666543 33 8889999999999988866654432110 0 1 11244555666665556666654222
Q ss_pred c--cccc-eeceee-----eecc-----ccccc------ccccccCHHHHHHHHhccc----c-ccCCcEEeecccCcCh
Q 005605 142 V--TIGE-EVGYSI-----RFED-----CSSAR------TVLKYLTDGMLLREAMTDP----L-LERYKVIVLDEAHERT 197 (688)
Q Consensus 142 ~--~~~~-~vg~~~-----~~~~-----~~~~~------~~i~~lT~G~l~~~~~~~~----l-l~~~~~lIlDEaher~ 197 (688)
. ..+. ..|... ..+. ....+ -.+..+++-+......... + .-..+.+||||+|.-.
T Consensus 272 ~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~ 351 (733)
T COG1203 272 LFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYA 351 (733)
T ss_pred ccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhc
Confidence 1 1111 111100 0000 00000 0111122222222111110 0 2345789999988533
Q ss_pred hh--HHHHHHHHHHHHhcCCCcEEEEecccccH---HHHHchhcCCCeeeeCCccc------ccceeecCCCchhHHHHH
Q 005605 198 LA--TDVLFGLLKEVLKNRPDLKLVVMSATLEA---EKFQGYFYGAPLMKVPGRLH------PVEIFYTQEPERDYLEAA 266 (688)
Q Consensus 198 ~~--~d~ll~~l~~i~~~~~~~~vil~SAT~~~---~~~~~~~~~~p~~~v~g~~~------~v~~~~~~~~~~~~~~~~ 266 (688)
-+ ..+++.++..+... +..+|+||||++. +.+..++.....+....... .+................
T Consensus 352 ~~~~~~~l~~~i~~l~~~--g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 429 (733)
T COG1203 352 DETMLAALLALLEALAEA--GVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEEL 429 (733)
T ss_pred ccchHHHHHHHHHHHHhC--CCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhh
Confidence 33 33345555544433 7899999999964 44555554322222210000 011110000000000001
Q ss_pred HHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCC----CCCCCCC
Q 005605 267 IRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAP----PPSKEGG 342 (688)
Q Consensus 267 ~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~----~g~~~~~ 342 (688)
...+ .......+++||-++|...+.++++.|+.. .. .+..|||.+...+|.+..+... .+
T Consensus 430 ~~~~--~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~--------~~-~v~LlHSRf~~~dR~~ke~~l~~~~~~~----- 493 (733)
T COG1203 430 IELI--SEEVKEGKKVLVIVNTVDRAIELYEKLKEK--------GP-KVLLLHSRFTLKDREEKERELKKLFKQN----- 493 (733)
T ss_pred hhcc--hhhhccCCcEEEEEecHHHHHHHHHHHHhc--------CC-CEEEEecccchhhHHHHHHHHHHHHhcc-----
Confidence 1111 112245678999999999999999999875 12 7999999999999988776322 22
Q ss_pred CCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCCC---CceEEEccch
Q 005605 343 PPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ---PGKCFRLYTE 418 (688)
Q Consensus 343 ~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~~---~G~~~~l~t~ 418 (688)
.-.|+|||.|.|-|+||+ .+++| +.+....+-+||+||.+|-+ +|..|-.-..
T Consensus 494 --~~~IvVaTQVIEagvDid-fd~mI--------------------Te~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~ 549 (733)
T COG1203 494 --EGFIVVATQVIEAGVDID-FDVLI--------------------TELAPIDSLIQRAGRVNRHGKKENGKIYVYNDE 549 (733)
T ss_pred --CCeEEEEeeEEEEEeccc-cCeee--------------------ecCCCHHHHHHHHHHHhhcccccCCceeEeecc
Confidence 458999999999999987 55544 33788899999999999985 4555555443
No 109
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.63 E-value=3.3e-15 Score=167.35 Aligned_cols=337 Identities=20% Similarity=0.262 Sum_probs=196.2
Q ss_pred ChHHH-HHHHHhcCCCChHHHHHHH--HHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEc-CCchh
Q 005605 52 SQRYY-EILEKRKSLPVWQQKEEFL--QVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACT-QPRRV 127 (688)
Q Consensus 52 ~~~~~-~~l~~~~~lp~~~~q~~ii--~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t-~p~~~ 127 (688)
.+... -..+.+|.+..|..|.+.+ +.++++++++-..||+.|||...-..++... +.. .+....++|. -+-..
T Consensus 208 ~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~-l~~--rr~~llilp~vsiv~E 284 (1008)
T KOG0950|consen 208 PTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREV-LCR--RRNVLLILPYVSIVQE 284 (1008)
T ss_pred chHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHH-HHH--hhceeEecceeehhHH
Confidence 33443 3456789999999999988 4588999999999999999986544333222 111 0111112221 11100
Q ss_pred hhccHHHHHHHhhcccccceeceeeeeccc-ccccccccccCHH---HHHHHHhccccccCCcEEeecccCcChhh--HH
Q 005605 128 AAMSVSRRVAEEMDVTIGEEVGYSIRFEDC-SSARTVLKYLTDG---MLLREAMTDPLLERYKVIVLDEAHERTLA--TD 201 (688)
Q Consensus 128 ~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~-~~~~~~i~~lT~G---~l~~~~~~~~ll~~~~~lIlDEaher~~~--~d 201 (688)
-.+....+....|..+-. |.-++... ......+.++|-. .+...++...-+.....||+||.|. ..+ .+
T Consensus 285 -k~~~l~~~~~~~G~~ve~---y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhm-i~d~~rg 359 (1008)
T KOG0950|consen 285 -KISALSPFSIDLGFPVEE---YAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHM-IGDKGRG 359 (1008)
T ss_pred -HHhhhhhhccccCCcchh---hcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeee-eeccccc
Confidence 011111122223333222 22111111 1122333445433 3444555555588899999999873 111 11
Q ss_pred -HHHHHHHHHHhc--CCCcEEEEecccc-cHHHHHchhcCCCeeeeCCccccccee-ecCCC----chhHHHHHHHHHHH
Q 005605 202 -VLFGLLKEVLKN--RPDLKLVVMSATL-EAEKFQGYFYGAPLMKVPGRLHPVEIF-YTQEP----ERDYLEAAIRTVVQ 272 (688)
Q Consensus 202 -~ll~~l~~i~~~--~~~~~vil~SAT~-~~~~~~~~~~~~p~~~v~g~~~~v~~~-~~~~~----~~~~~~~~~~~l~~ 272 (688)
.+..++.+++-. ....|+|.||||+ +...+++++.. -+.. .+..||... |.... ..+... .+..+..
T Consensus 360 ~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~A-~~y~--t~fRPv~L~E~ik~G~~i~~~~r~~-~lr~ia~ 435 (1008)
T KOG0950|consen 360 AILELLLAKILYENLETSVQIIGMSATIPNNSLLQDWLDA-FVYT--TRFRPVPLKEYIKPGSLIYESSRNK-VLREIAN 435 (1008)
T ss_pred hHHHHHHHHHHHhccccceeEeeeecccCChHHHHHHhhh-hhee--cccCcccchhccCCCcccccchhhH-HHHHhhh
Confidence 133333333321 1246799999999 67888887752 1111 111222111 00000 000000 0111110
Q ss_pred ----------------H-HhcCCCC-CEEEecCcHHHHHHHHHHHHHHHhhc-------C--------------------
Q 005605 273 ----------------I-HMCEPSG-DILVFLTGEEEIEDACRKITKEITNM-------G-------------------- 307 (688)
Q Consensus 273 ----------------i-~~~~~~g-~iLVFl~~~~~i~~~~~~L~~~~~~~-------~-------------------- 307 (688)
+ ...-+.| ++|||||++..++.++..+....... +
T Consensus 436 l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~ 515 (1008)
T KOG0950|consen 436 LYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDP 515 (1008)
T ss_pred hhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccch
Confidence 0 0011223 59999999999999998776543110 0
Q ss_pred --CCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcc
Q 005605 308 --DQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVE 385 (688)
Q Consensus 308 --~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~ 385 (688)
...-.+.+..+|++++.++|+.+-..|+.| ...|++||+..+.|+..|..+++|-+-++-..
T Consensus 516 Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g-------~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~--------- 579 (1008)
T KOG0950|consen 516 VLAKTIPYGVAYHHAGLTSEEREIIEAAFREG-------NIFVLVATSTLAAGVNLPARRVIIRAPYVGRE--------- 579 (1008)
T ss_pred HHheeccccceecccccccchHHHHHHHHHhc-------CeEEEEecchhhccCcCCcceeEEeCCccccc---------
Confidence 001235578899999999999999999999 89999999999999999999999965442222
Q ss_pred cceeeecchhhHHhhccccCCC---CCceEEEccchhhh
Q 005605 386 SLLVSPISKASAHQRSGRAGRT---QPGKCFRLYTEKSF 421 (688)
Q Consensus 386 ~l~~~p~s~~~~~qR~GRaGR~---~~G~~~~l~t~~~~ 421 (688)
+.+..+|.|++|||||+ ..|.++.++.+.+-
T Consensus 580 -----~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~ 613 (1008)
T KOG0950|consen 580 -----FLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEK 613 (1008)
T ss_pred -----hhhhhhHHhhhhhhhhcccccCcceEEEeeccch
Confidence 78899999999999999 46999999987663
No 110
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.62 E-value=5.7e-15 Score=164.17 Aligned_cols=321 Identities=14% Similarity=0.179 Sum_probs=205.0
Q ss_pred CCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHH-hcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhccc
Q 005605 65 LPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFV-LEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (688)
Q Consensus 65 lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~l-l~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (688)
..+...|++.|..+..|+-|.+.|+|-+|||...--.+ +-.. + ....+.|.|......+-++.+.+..+ .
T Consensus 296 FelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~---h-----~TR~iYTSPIKALSNQKfRDFk~tF~-D 366 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQK---H-----MTRTIYTSPIKALSNQKFRDFKETFG-D 366 (1248)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHh---h-----ccceEecchhhhhccchHHHHHHhcc-c
Confidence 36678899999999999999999999999997543211 1111 0 22356777765544455555555443 2
Q ss_pred ccceeceeeeecccccccccccccCHHHHHHHHhcccc-ccCCcEEeecccCc-ChhhHHHHHHHHHHHHhcCCCcEEEE
Q 005605 144 IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHE-RTLATDVLFGLLKEVLKNRPDLKLVV 221 (688)
Q Consensus 144 ~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~l-l~~~~~lIlDEahe-r~~~~d~ll~~l~~i~~~~~~~~vil 221 (688)
+|...| +....+...+.+||+.+|..++-..+. ++++.+||+||+|- -....+.+.+-+-.++ .++.++|+
T Consensus 367 vgLlTG-----DvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMl--P~HV~~Il 439 (1248)
T KOG0947|consen 367 VGLLTG-----DVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIML--PRHVNFIL 439 (1248)
T ss_pred cceeec-----ceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeec--cccceEEE
Confidence 222223 223445677889999999988877664 89999999999992 1122222222222222 33789999
Q ss_pred ecccc-cHHHHHchhcCCC---eeee--CCcccccceeecCCC-------------------------------------
Q 005605 222 MSATL-EAEKFQGYFYGAP---LMKV--PGRLHPVEIFYTQEP------------------------------------- 258 (688)
Q Consensus 222 ~SAT~-~~~~~~~~~~~~p---~~~v--~g~~~~v~~~~~~~~------------------------------------- 258 (688)
+|||. +...|++|.+... +..+ ..|.-|.+++.....
T Consensus 440 LSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~ 519 (1248)
T KOG0947|consen 440 LSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSD 519 (1248)
T ss_pred EeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccccccccc
Confidence 99999 6889999987422 2212 223333333321100
Q ss_pred --------------------------chhHH--HHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHh------
Q 005605 259 --------------------------ERDYL--EAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEIT------ 304 (688)
Q Consensus 259 --------------------------~~~~~--~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~------ 304 (688)
..+.. .....++.++.. ..--+++||+=+++.|++.++.|...-.
T Consensus 520 ~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k-~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EK 598 (1248)
T KOG0947|consen 520 ARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRK-KNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEK 598 (1248)
T ss_pred ccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhh-cccCceEEEEEccccHHHHHHHHhccCcccchhH
Confidence 00000 011222333322 3345799999999999999999964310
Q ss_pred ------------hc-CCC--CC---------CeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCcc
Q 005605 305 ------------NM-GDQ--VG---------PVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLT 360 (688)
Q Consensus 305 ------------~~-~~~--~~---------~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~ 360 (688)
.+ +.+ .| .--+..+||++-+--.+-+..-|..| -.||++||...+.|++
T Consensus 599 seV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrG-------lVKVLFATETFAMGVN 671 (1248)
T KOG0947|consen 599 SEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRG-------LVKVLFATETFAMGVN 671 (1248)
T ss_pred HHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcC-------ceEEEeehhhhhhhcC
Confidence 00 000 01 01367789999988888888888888 8999999999999999
Q ss_pred cCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC---CCceEEEccchh
Q 005605 361 IDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT---QPGKCFRLYTEK 419 (688)
Q Consensus 361 i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~---~~G~~~~l~t~~ 419 (688)
.|.-.+|+++=. | .|... ..-...-+|.|.+|||||. ..|.++-+....
T Consensus 672 MPARtvVF~Sl~-K---hDG~e------fR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 672 MPARTVVFSSLR-K---HDGNE------FRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred CCceeEEeeehh-h---ccCcc------eeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 999888887432 2 22111 1146778999999999998 469988876643
No 111
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.61 E-value=4.5e-15 Score=169.38 Aligned_cols=128 Identities=19% Similarity=0.140 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCC
Q 005605 262 YLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEG 341 (688)
Q Consensus 262 ~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~ 341 (688)
.++.++..+.... ..+.++|||+++++.++.+++.|.+. ++.+..+||++++.+|.++++.|+.|
T Consensus 427 qi~~Ll~eI~~~~--~~g~~vLIf~~tk~~ae~L~~~L~~~---------gi~~~~lh~~~~~~eR~~~l~~fr~G---- 491 (655)
T TIGR00631 427 QVDDLLSEIRQRV--ARNERVLVTTLTKKMAEDLTDYLKEL---------GIKVRYLHSEIDTLERVEIIRDLRLG---- 491 (655)
T ss_pred hHHHHHHHHHHHH--cCCCEEEEEECCHHHHHHHHHHHhhh---------ccceeeeeCCCCHHHHHHHHHHHhcC----
Confidence 3344444443322 34568999999999999999999874 68899999999999999999999999
Q ss_pred CCCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCCCCceEEEccchhh
Q 005605 342 GPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKS 420 (688)
Q Consensus 342 ~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~~~ 420 (688)
...|+||||++++|+|+|+|++||.++-.+.- .|.+..+|+||+|||||..+|.|+.+++..+
T Consensus 492 ---~i~VLV~t~~L~rGfDiP~v~lVvi~DadifG-------------~p~~~~~~iqriGRagR~~~G~vi~~~~~~~ 554 (655)
T TIGR00631 492 ---EFDVLVGINLLREGLDLPEVSLVAILDADKEG-------------FLRSERSLIQTIGRAARNVNGKVIMYADKIT 554 (655)
T ss_pred ---CceEEEEcChhcCCeeeCCCcEEEEeCccccc-------------CCCCHHHHHHHhcCCCCCCCCEEEEEEcCCC
Confidence 89999999999999999999999987621100 0889999999999999999999999988643
No 112
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.57 E-value=1.9e-14 Score=165.44 Aligned_cols=125 Identities=19% Similarity=0.145 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCC
Q 005605 263 LEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGG 342 (688)
Q Consensus 263 ~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~ 342 (688)
++.++..+.... ..+.++|||++++..++.+++.|... ++.+..+||++++.+|..+++.|+.|
T Consensus 432 ~~~L~~~L~~~~--~~g~~viIf~~t~~~ae~L~~~L~~~---------gi~~~~~h~~~~~~~R~~~l~~f~~g----- 495 (652)
T PRK05298 432 VDDLLSEIRKRV--AKGERVLVTTLTKRMAEDLTDYLKEL---------GIKVRYLHSDIDTLERVEIIRDLRLG----- 495 (652)
T ss_pred HHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHHHHHHhhc---------ceeEEEEECCCCHHHHHHHHHHHHcC-----
Confidence 334444444333 24568999999999999999999874 78999999999999999999999998
Q ss_pred CCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCCCCceEEEccch
Q 005605 343 PPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTE 418 (688)
Q Consensus 343 ~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~ 418 (688)
...|+|||+++++|+|+|++++||+++....- .|.+.++|+||+|||||.+.|.|+.+++.
T Consensus 496 --~i~vlV~t~~L~rGfdlp~v~lVii~d~eifG-------------~~~~~~~yiqr~GR~gR~~~G~~i~~~~~ 556 (652)
T PRK05298 496 --EFDVLVGINLLREGLDIPEVSLVAILDADKEG-------------FLRSERSLIQTIGRAARNVNGKVILYADK 556 (652)
T ss_pred --CceEEEEeCHHhCCccccCCcEEEEeCCcccc-------------cCCCHHHHHHHhccccCCCCCEEEEEecC
Confidence 88999999999999999999999987641111 07789999999999999999999999984
No 113
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.55 E-value=1.1e-13 Score=160.21 Aligned_cols=296 Identities=16% Similarity=0.229 Sum_probs=190.7
Q ss_pred hHHHHHHHHHHh----cCC--EEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhc
Q 005605 68 WQQKEEFLQVLK----ANQ--VIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (688)
Q Consensus 68 ~~~q~~ii~~i~----~g~--~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (688)
|+=|...|+.+. +++ +=+|||.-|=|||-......+... ... .+..+++ |+-+.+.+-++++.+.+.
T Consensus 596 T~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV-~~G---KQVAvLV---PTTlLA~QHy~tFkeRF~ 668 (1139)
T COG1197 596 TPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAV-MDG---KQVAVLV---PTTLLAQQHYETFKERFA 668 (1139)
T ss_pred CHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHh-cCC---CeEEEEc---ccHHhHHHHHHHHHHHhc
Confidence 444555565553 333 456799999999987665554333 111 2223344 444555555666665432
Q ss_pred ccccceeceeeeecccc----------cccccccccCHHHHHHHHhccccccCCcEEeecccCcChhhHHHHHHHHHHHH
Q 005605 142 VTIGEEVGYSIRFEDCS----------SARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVL 211 (688)
Q Consensus 142 ~~~~~~vg~~~~~~~~~----------~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEaher~~~~d~ll~~l~~i~ 211 (688)
...-.|+.-.||.... ..+-.|.+.|.. ++..+.-+.+..++|+||-|.-.+. -.+-+|.+
T Consensus 669 -~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr----LL~kdv~FkdLGLlIIDEEqRFGVk---~KEkLK~L- 739 (1139)
T COG1197 669 -GFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR----LLSKDVKFKDLGLLIIDEEQRFGVK---HKEKLKEL- 739 (1139)
T ss_pred -CCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH----hhCCCcEEecCCeEEEechhhcCcc---HHHHHHHH-
Confidence 1112333333333221 123345555643 2334445899999999997642122 23445554
Q ss_pred hcCCCcEEEEecccccHHHHHchhcC---CCeeee-CCcccccceeecCCCchhHHHHHHHHHHHHHhcCCCCCEEEecC
Q 005605 212 KNRPDLKLVVMSATLEAEKFQGYFYG---APLMKV-PGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLT 287 (688)
Q Consensus 212 ~~~~~~~vil~SAT~~~~~~~~~~~~---~p~~~v-~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~ 287 (688)
+.+.-++-+|||.=+..+.--+.+ --++.- |...+||+.+..+-...-. .+++..-+ ..+|++-.-.|
T Consensus 740 --r~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~i----reAI~REl--~RgGQvfYv~N 811 (1139)
T COG1197 740 --RANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLI----REAILREL--LRGGQVFYVHN 811 (1139)
T ss_pred --hccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHH----HHHHHHHH--hcCCEEEEEec
Confidence 347789999999843333211212 122222 4455788888766443222 22222222 24789888899
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCcccCCeEE-
Q 005605 288 GEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVY- 366 (688)
Q Consensus 288 ~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~- 366 (688)
..++|+.+++.|++.. |...+...||.|+..+-+.++..|-+| ...|+|||.|.|+|||||++.-
T Consensus 812 rV~~Ie~~~~~L~~LV-------PEarI~vaHGQM~e~eLE~vM~~F~~g-------~~dVLv~TTIIEtGIDIPnANTi 877 (1139)
T COG1197 812 RVESIEKKAERLRELV-------PEARIAVAHGQMRERELEEVMLDFYNG-------EYDVLVCTTIIETGIDIPNANTI 877 (1139)
T ss_pred chhhHHHHHHHHHHhC-------CceEEEEeecCCCHHHHHHHHHHHHcC-------CCCEEEEeeeeecCcCCCCCceE
Confidence 9999999999999874 789999999999999999999999999 8999999999999999999954
Q ss_pred EEc-CCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccchhh
Q 005605 367 VID-PGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKS 420 (688)
Q Consensus 367 VId-~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~ 420 (688)
+|+ .+. ---++.-|=.||.||. +.|.||-||....
T Consensus 878 IIe~AD~-------------------fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k 914 (1139)
T COG1197 878 IIERADK-------------------FGLAQLYQLRGRVGRSNKQAYAYFLYPPQK 914 (1139)
T ss_pred EEecccc-------------------ccHHHHHHhccccCCccceEEEEEeecCcc
Confidence 443 222 2346677999999999 8899999998644
No 114
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.53 E-value=2.2e-13 Score=155.43 Aligned_cols=144 Identities=12% Similarity=0.038 Sum_probs=103.6
Q ss_pred CCCCCChHHHHHHH-----HhcCC-C--ChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceE
Q 005605 47 NGKPYSQRYYEILE-----KRKSL-P--VWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMM 118 (688)
Q Consensus 47 ~~~~l~~~~~~~l~-----~~~~l-p--~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~ 118 (688)
+.+++.....+.+. ..|+. | ++++|.++++.+..++.+++.++||+|||+++..+++... +.. ....+
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~a-L~g---~~v~I 140 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNA-LTG---KPVHL 140 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHH-hhc---CCeEE
Confidence 34456666555444 34544 4 5999999999999999999999999999999999988654 221 12456
Q ss_pred EEEcCCchhhhccHHHHHHHhhcccccceeceeeeecccccccccccccCHHHH-HHHHhcccc-cc-------CCcEEe
Q 005605 119 IACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGML-LREAMTDPL-LE-------RYKVIV 189 (688)
Q Consensus 119 i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l-~~~~~~~~l-l~-------~~~~lI 189 (688)
+.|++.++.+....+..+.+.++.+++..+|.....+........|.+.|||++ .+++..+.+ ++ .+.++|
T Consensus 141 VTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~I 220 (970)
T PRK12899 141 VTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAI 220 (970)
T ss_pred EeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEE
Confidence 677777777777777777777777777777654332222223578999999999 887765533 33 558999
Q ss_pred ecccC
Q 005605 190 LDEAH 194 (688)
Q Consensus 190 lDEah 194 (688)
+||||
T Consensus 221 IDEAD 225 (970)
T PRK12899 221 IDEVD 225 (970)
T ss_pred Eechh
Confidence 99987
No 115
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.51 E-value=3.7e-13 Score=153.46 Aligned_cols=121 Identities=19% Similarity=0.188 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCC
Q 005605 263 LEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGG 342 (688)
Q Consensus 263 ~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~ 342 (688)
..+.++.+..+|. .+-++|||+.+.+..+.+++.|... ++....||+..++.++..+.+.+++|
T Consensus 435 ~~Aii~ei~~~~~--~GrpVLV~t~sv~~se~ls~~L~~~---------gi~~~vLnak~~~~Ea~ii~~Ag~~G----- 498 (908)
T PRK13107 435 YQAIIKDIKDCRE--RGQPVLVGTVSIEQSELLARLMVKE---------KIPHEVLNAKFHEREAEIVAQAGRTG----- 498 (908)
T ss_pred HHHHHHHHHHHHH--cCCCEEEEeCcHHHHHHHHHHHHHC---------CCCeEeccCcccHHHHHHHHhCCCCC-----
Confidence 3445555556664 3557999999999999999999874 78889999999999999999999988
Q ss_pred CCceEEEEecCccccCcccC-------------------------------------CeEEEEcCCcccceeecCCCCcc
Q 005605 343 PPGRKIVVSTNIAETSLTID-------------------------------------GIVYVIDPGFAKQKVYNPRVRVE 385 (688)
Q Consensus 343 ~~~~kvlvaTniae~gi~i~-------------------------------------~V~~VId~g~~k~~~~~~~~~~~ 385 (688)
+|+||||+|+||+||. |=-|||=+..
T Consensus 499 ----~VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTer------------- 561 (908)
T PRK13107 499 ----AVTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTER------------- 561 (908)
T ss_pred ----cEEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEeccc-------------
Confidence 4999999999999986 1125665555
Q ss_pred cceeeecchhhHHhhccccCCC-CCceEEEccchhhh
Q 005605 386 SLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (688)
Q Consensus 386 ~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (688)
+-|.--=.|=.|||||. .||.+-.+.|-++.
T Consensus 562 -----heSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 562 -----HESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred -----CchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 55555556889999999 89998877775543
No 116
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.50 E-value=7.5e-14 Score=127.42 Aligned_cols=104 Identities=23% Similarity=0.387 Sum_probs=95.3
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCcccc
Q 005605 278 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAET 357 (688)
Q Consensus 278 ~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~ 357 (688)
..+++|||+++...++.+++.|.+. ...+..+||+++..+|..+++.|..+ ..+|+++|+.++.
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~~~~~~~~~~f~~~-------~~~ili~t~~~~~ 90 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKP---------GIKVAALHGDGSQEEREEVLKDFREG-------EIVVLVATDVIAR 90 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhc---------CCcEEEEECCCCHHHHHHHHHHHHcC-------CCcEEEEcChhhc
Confidence 5789999999999999999999762 67899999999999999999999988 7899999999999
Q ss_pred CcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEc
Q 005605 358 SLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRL 415 (688)
Q Consensus 358 gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l 415 (688)
|+|+|++++||-++. |.+..++.|++||+||. +.|.|+.+
T Consensus 91 G~d~~~~~~vi~~~~------------------~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 91 GIDLPNVSVVINYDL------------------PWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CcChhhCCEEEEeCC------------------CCCHHHheecccccccCCCCceEEeC
Confidence 999999999998887 99999999999999999 68888753
No 117
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.49 E-value=6.7e-14 Score=137.32 Aligned_cols=148 Identities=18% Similarity=0.285 Sum_probs=111.7
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhcc---
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (688)
.+.+|+++.|+||+||||||++..+. +++.... .....+.++++++..++..++.+|+.-....
T Consensus 25 ~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~ 102 (248)
T COG1116 25 SVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLTVLDNVALGLELRGK 102 (248)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccC--CCCCCEEEEeccCcccchhhHHhhheehhhcccc
Confidence 36789999999999999999988432 2222111 1123567999999999999999998543321
Q ss_pred ----------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHH
Q 005605 143 ----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (688)
Q Consensus 143 ----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i 210 (688)
.....||.. ...+..+..+|+|+.+|+.++++++.+++++++|| ..+|.+....+.+.+.++
T Consensus 103 ~~~e~~~~a~~~L~~VgL~------~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~l 176 (248)
T COG1116 103 SKAEARERAKELLELVGLA------GFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRL 176 (248)
T ss_pred chHhHHHHHHHHHHHcCCc------chhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHH
Confidence 222334432 33467788999999999999999999999999999 567778888888888888
Q ss_pred HhcCCCcEEEEecccccHH-HHHc
Q 005605 211 LKNRPDLKLVVMSATLEAE-KFQG 233 (688)
Q Consensus 211 ~~~~~~~~vil~SAT~~~~-~~~~ 233 (688)
.++. +..++++||.++.. .+++
T Consensus 177 w~~~-~~TvllVTHdi~EAv~Lsd 199 (248)
T COG1116 177 WEET-RKTVLLVTHDVDEAVYLAD 199 (248)
T ss_pred HHhh-CCEEEEEeCCHHHHHhhhC
Confidence 8776 68999999999654 3444
No 118
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.47 E-value=1.6e-13 Score=156.96 Aligned_cols=162 Identities=20% Similarity=0.294 Sum_probs=122.0
Q ss_pred EEEEeccccc--HHHHHchhcCCCeeeeCCcccccc------eeecCCCchhHHHHHHHHHHHHHhcCCCCCEEEecCcH
Q 005605 218 KLVVMSATLE--AEKFQGYFYGAPLMKVPGRLHPVE------IFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGE 289 (688)
Q Consensus 218 ~vil~SAT~~--~~~~~~~~~~~p~~~v~g~~~~v~------~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~ 289 (688)
++-.||.|.. ...|.+.+ +.+|+.||.- .|+. ..| ....++..+++..+...+. .+.++|||+++.
T Consensus 535 kLaGMTGTA~te~~Ef~~iY-~L~Vv~IPTn-rP~~R~D~~d~vy--~t~~eK~~Ali~~I~~~~~--~grpVLIft~Sv 608 (1025)
T PRK12900 535 KLAGMTGTAETEASEFFEIY-KLDVVVIPTN-KPIVRKDMDDLVY--KTRREKYNAIVLKVEELQK--KGQPVLVGTASV 608 (1025)
T ss_pred hhcccCCCChhHHHHHHHHh-CCcEEECCCC-CCcceecCCCeEe--cCHHHHHHHHHHHHHHHhh--CCCCEEEEeCcH
Confidence 4556666663 23343332 4667777653 2321 222 1233455666666655553 456899999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCcccC---CeE-
Q 005605 290 EEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTID---GIV- 365 (688)
Q Consensus 290 ~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~---~V~- 365 (688)
+..+.+++.|... ++....||+ .+.+|+..+..|..+ .-.|+||||+|+||+||+ +|.
T Consensus 609 e~sE~Ls~~L~~~---------gI~h~vLna--kq~~REa~Iia~AG~-------~g~VtIATNMAGRGtDIkl~~~V~~ 670 (1025)
T PRK12900 609 EVSETLSRMLRAK---------RIAHNVLNA--KQHDREAEIVAEAGQ-------KGAVTIATNMAGRGTDIKLGEGVRE 670 (1025)
T ss_pred HHHHHHHHHHHHc---------CCCceeecC--CHHHhHHHHHHhcCC-------CCeEEEeccCcCCCCCcCCccchhh
Confidence 9999999999874 688889997 578888888888877 779999999999999999 664
Q ss_pred ----EEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccchhhh
Q 005605 366 ----YVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (688)
Q Consensus 366 ----~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (688)
+||++.. |-|...|.||.|||||. .||.+..+++.++.
T Consensus 671 vGGL~VIgter------------------hes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 671 LGGLFILGSER------------------HESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred hCCceeeCCCC------------------CchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 4588888 99999999999999999 89999999998765
No 119
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.45 E-value=1e-13 Score=132.78 Aligned_cols=154 Identities=21% Similarity=0.244 Sum_probs=95.3
Q ss_pred hHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhcc---cc
Q 005605 68 WQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV---TI 144 (688)
Q Consensus 68 ~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~---~~ 144 (688)
++.|.++++.+.+|+++++.||||||||+.+..+++... ... ...+.++++ |.+..+.+..+++...... ..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~-~~~-~~~~~lii~---P~~~l~~q~~~~~~~~~~~~~~~~ 75 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRL-QEG-KDARVLIIV---PTRALAEQQFERLRKFFSNTNVRV 75 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHH-HTT-SSSEEEEEE---SSHHHHHHHHHHHHHHTTTTTSSE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhh-ccC-CCceEEEEe---eccccccccccccccccccccccc
Confidence 578999999999999999999999999999998877543 111 111233344 4444444555555444332 22
Q ss_pred cceeceeeee-cc--cccccccccccCHHHHHHHHhccc-cccCCcEEeecccCcChhh--HHHHHHHHHHHHhcCCCcE
Q 005605 145 GEEVGYSIRF-ED--CSSARTVLKYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLA--TDVLFGLLKEVLKNRPDLK 218 (688)
Q Consensus 145 ~~~vg~~~~~-~~--~~~~~~~i~~lT~G~l~~~~~~~~-ll~~~~~lIlDEaher~~~--~d~ll~~l~~i~~~~~~~~ 218 (688)
....|..... +. .......+.++|++++.+.+.... .+.++++||+||+|.-... ...+..+++.+. ..++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~-~~~~~~ 154 (169)
T PF00270_consen 76 VLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLK-RFKNIQ 154 (169)
T ss_dssp EEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSH-TTTTSE
T ss_pred ccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhc-CCCCCc
Confidence 2222211100 01 111246788999999999887643 3566999999999963331 122333333332 223689
Q ss_pred EEEeccccc
Q 005605 219 LVVMSATLE 227 (688)
Q Consensus 219 vil~SAT~~ 227 (688)
++++|||+.
T Consensus 155 ~i~~SAT~~ 163 (169)
T PF00270_consen 155 IILLSATLP 163 (169)
T ss_dssp EEEEESSST
T ss_pred EEEEeeCCC
Confidence 999999997
No 120
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.45 E-value=1.2e-13 Score=131.56 Aligned_cols=161 Identities=20% Similarity=0.344 Sum_probs=118.6
Q ss_pred HHhcCCEEEEEeCCCCChhcchhH-----------HHhcCccCCC----ccccCceEEEEcCCchhhhccHHHHHH----
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIET----PDRRRKMMIACTQPRRVAAMSVSRRVA---- 137 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~-----------~ll~~~~~~~----~~~~~~~~i~~t~p~~~~~~~v~~~v~---- 137 (688)
.+.+|++++|+||+||||||++.- +.+++.+... ...++.+++++++....+.+++.+++.
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~ 103 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV 103 (240)
T ss_pred eEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH
Confidence 467899999999999999999872 3333321111 112345678999999999999999883
Q ss_pred ----------HhhcccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHH
Q 005605 138 ----------EEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (688)
Q Consensus 138 ----------~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ 205 (688)
++....+...||.. ...+..+..+|+|+.+|+++++++..+|+++++|| .-+|+.....+++
T Consensus 104 ~v~~~~k~eA~~~A~~lL~~VGL~------~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~ 177 (240)
T COG1126 104 KVKKLSKAEAREKALELLEKVGLA------DKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLD 177 (240)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCch------hhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHH
Confidence 23344555667754 23456677899999999999999999999999999 5578888888999
Q ss_pred HHHHHHhcCCCcEEEEeccccc-HHHHHch--hcCCCeeeeCC
Q 005605 206 LLKEVLKNRPDLKLVVMSATLE-AEKFQGY--FYGAPLMKVPG 245 (688)
Q Consensus 206 ~l~~i~~~~~~~~vil~SAT~~-~~~~~~~--~~~~p~~~v~g 245 (688)
+++.+.+. +.+.++++|-|. +...++. |.+.-.+...|
T Consensus 178 vm~~LA~e--GmTMivVTHEM~FAr~VadrviFmd~G~iie~g 218 (240)
T COG1126 178 VMKDLAEE--GMTMIIVTHEMGFAREVADRVIFMDQGKIIEEG 218 (240)
T ss_pred HHHHHHHc--CCeEEEEechhHHHHHhhheEEEeeCCEEEEec
Confidence 99998877 799999999995 3445543 33444343344
No 121
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.45 E-value=8.3e-13 Score=139.57 Aligned_cols=316 Identities=13% Similarity=0.071 Sum_probs=188.8
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCC--------------ccccCceEEEE
Q 005605 56 YEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIET--------------PDRRRKMMIAC 121 (688)
Q Consensus 56 ~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~--------------~~~~~~~~i~~ 121 (688)
.++++.+.-..-+.+|.+.+..+.+|+.+++.-.|-|||+|....--.+-..... .+..++..+..
T Consensus 276 ~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~ 355 (1034)
T KOG4150|consen 276 RSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHV 355 (1034)
T ss_pred HHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEE
Confidence 4455555566778999999999999999999999999999975421111100000 00011111111
Q ss_pred --cCCchhhhccHHHHHHHhhcccccceeceeeeecccccccccccccCHHHHHHHHhcc-----ccccCCcEEeecccC
Q 005605 122 --TQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTD-----PLLERYKVIVLDEAH 194 (688)
Q Consensus 122 --t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~-----~ll~~~~~lIlDEah 194 (688)
...+.-+.....+...+.. .+. ....+.+..+.-+.+..-.++.. ..+-+..+++.||.|
T Consensus 356 ~~I~~~K~A~V~~~D~~sE~~-~~A------------~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~ 422 (1034)
T KOG4150|consen 356 EVIKARKSAYVEMSDKLSETT-KSA------------LKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCA 422 (1034)
T ss_pred EehhhhhcceeecccCCCchh-HHH------------HHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhccccee
Confidence 1111111111111000000 000 00012233344444444433332 234556678889977
Q ss_pred cChhhHHH--------HHHHHHHHHhcCCCcEEEEecccc--cHHHHHchhcC--CCeeeeCCcccccceeecCCCc---
Q 005605 195 ERTLATDV--------LFGLLKEVLKNRPDLKLVVMSATL--EAEKFQGYFYG--APLMKVPGRLHPVEIFYTQEPE--- 259 (688)
Q Consensus 195 er~~~~d~--------ll~~l~~i~~~~~~~~vil~SAT~--~~~~~~~~~~~--~p~~~v~g~~~~v~~~~~~~~~--- 259 (688)
.-..-... ++.+++-+- ...+++++-.|||+ +....++.|+- ..++.+.|....-+++.+..|.
T Consensus 423 ~Y~~~~~~~~~~~~R~L~~L~~~F~-~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P 501 (1034)
T KOG4150|consen 423 LYLFPTKALAQDQLRALSDLIKGFE-ASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPP 501 (1034)
T ss_pred eeecchhhHHHHHHHHHHHHHHHHH-hhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCC
Confidence 43222221 222222222 22489999999999 34555666653 4467777876555555443321
Q ss_pred ------hhHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCC
Q 005605 260 ------RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEP 333 (688)
Q Consensus 260 ------~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~ 333 (688)
.+++......+.+... .+-+.|.||+.++-|+.+....++.+...+.+. --.+..+.|+...++|+++...
T Consensus 502 ~~~~~~~~~i~E~s~~~~~~i~--~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~L-V~~i~SYRGGY~A~DRRKIE~~ 578 (1034)
T KOG4150|consen 502 TSKSEKSSKVVEVSHLFAEMVQ--HGLRCIAFCPSRKLCELVLCLTREILAETAPHL-VEAITSYRGGYIAEDRRKIESD 578 (1034)
T ss_pred cchhhhhhHHHHHHHHHHHHHH--cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHH-HHHHHhhcCccchhhHHHHHHH
Confidence 2333333344444433 345799999999988887766665443322110 1235678899999999999888
Q ss_pred CCCCCCCCCCCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceE
Q 005605 334 APPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKC 412 (688)
Q Consensus 334 ~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~ 412 (688)
.=.| +.+-|+|||..|-||||.+++.|+.+|| |.|.++..|.+|||||. .+..+
T Consensus 579 ~F~G-------~L~giIaTNALELGIDIG~LDAVl~~GF------------------P~S~aNl~QQ~GRAGRRNk~SLa 633 (1034)
T KOG4150|consen 579 LFGG-------KLCGIIATNALELGIDIGHLDAVLHLGF------------------PGSIANLWQQAGRAGRRNKPSLA 633 (1034)
T ss_pred hhCC-------eeeEEEecchhhhccccccceeEEEccC------------------chhHHHHHHHhccccccCCCceE
Confidence 7777 7899999999999999999999999999 99999999999999999 66654
Q ss_pred E
Q 005605 413 F 413 (688)
Q Consensus 413 ~ 413 (688)
.
T Consensus 634 v 634 (1034)
T KOG4150|consen 634 V 634 (1034)
T ss_pred E
Confidence 4
No 122
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.45 E-value=1.7e-13 Score=134.31 Aligned_cols=152 Identities=22% Similarity=0.328 Sum_probs=112.7
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHH-----------HhcCccCCC-------ccccCceEEEEcCCchhhhccHHHHHHH
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET-------PDRRRKMMIACTQPRRVAAMSVSRRVAE 138 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~-----------ll~~~~~~~-------~~~~~~~~i~~t~p~~~~~~~v~~~v~~ 138 (688)
.+.+|+.++|+||+||||||++..+ .+++.++.. ..+.+.++++++.--.+..+++.+++.-
T Consensus 27 ~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~l 106 (226)
T COG1136 27 EIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVEL 106 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHh
Confidence 3679999999999999999998732 233322221 1123467899999989999999999863
Q ss_pred hhc-------------ccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHH
Q 005605 139 EMD-------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (688)
Q Consensus 139 ~~~-------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~l 203 (688)
.+. ..+...+|... ...+..+..+|+|+.+|++++++++.+|++|+.|| ..+|+-..+.+
T Consensus 107 pl~~~~~~~~~~~~~~~~l~~~lgl~~-----~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V 181 (226)
T COG1136 107 PLLIAGKSAGRRKRAAEELLEVLGLED-----RLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEV 181 (226)
T ss_pred HHHHcCCChhHHHHHHHHHHHhcCChh-----hhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHH
Confidence 221 11122223220 11235678899999999999999999999999999 67788888899
Q ss_pred HHHHHHHHhcCCCcEEEEecccccHHHHHch
Q 005605 204 FGLLKEVLKNRPDLKLVVMSATLEAEKFQGY 234 (688)
Q Consensus 204 l~~l~~i~~~~~~~~vil~SAT~~~~~~~~~ 234 (688)
+.+++.+.+.. +..+|+.||+.....+++.
T Consensus 182 ~~ll~~~~~~~-g~tii~VTHd~~lA~~~dr 211 (226)
T COG1136 182 LELLRELNKER-GKTIIMVTHDPELAKYADR 211 (226)
T ss_pred HHHHHHHHHhc-CCEEEEEcCCHHHHHhCCE
Confidence 99999998775 7799999999877666543
No 123
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.41 E-value=1e-13 Score=114.76 Aligned_cols=71 Identities=24% Similarity=0.287 Sum_probs=68.6
Q ss_pred CeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeee
Q 005605 312 PVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSP 391 (688)
Q Consensus 312 ~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p 391 (688)
++.+..+||++++++|+.+++.|..+ ..+||+||+++++|||+|++++||.++. |
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~-------~~~vli~t~~~~~Gid~~~~~~vi~~~~------------------~ 61 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSG-------EIRVLIATDILGEGIDLPDASHVIFYDP------------------P 61 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTT-------SSSEEEESCGGTTSSTSTTESEEEESSS------------------E
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhcc-------CceEEEeecccccccccccccccccccc------------------C
Confidence 78999999999999999999999998 7799999999999999999999999998 9
Q ss_pred cchhhHHhhccccCCC
Q 005605 392 ISKASAHQRSGRAGRT 407 (688)
Q Consensus 392 ~s~~~~~qR~GRaGR~ 407 (688)
.+..+|.||+||+||.
T Consensus 62 ~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 62 WSPEEYIQRIGRAGRI 77 (78)
T ss_dssp SSHHHHHHHHTTSSTT
T ss_pred CCHHHHHHHhhcCCCC
Confidence 9999999999999996
No 124
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.41 E-value=2.6e-13 Score=135.88 Aligned_cols=152 Identities=21% Similarity=0.326 Sum_probs=120.4
Q ss_pred HHhcCCEEEEEeCCCCChhcchhH-----------HHhcCccCCC------ccccCceEEEEcCCchhhhccHHHHHHHh
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIET------PDRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~-----------~ll~~~~~~~------~~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (688)
.|..|++.+|+|.+|+||||++.. +++++.++.. ...++.++++++.+..+...+|+++++..
T Consensus 28 ~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~P 107 (339)
T COG1135 28 EIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFP 107 (339)
T ss_pred EEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhh
Confidence 478999999999999999999873 3444433322 12356788999999999999999999754
Q ss_pred hc-------------ccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHH
Q 005605 140 MD-------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (688)
Q Consensus 140 ~~-------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll 204 (688)
+. ..+.+.||.. ...+..+..+|+|+.+|+.++++++.+|++|+.|| .++|+..+..++
T Consensus 108 Leiag~~k~ei~~RV~elLelVgL~------dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL 181 (339)
T COG1135 108 LELAGVPKAEIKQRVAELLELVGLS------DKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSIL 181 (339)
T ss_pred HhhcCCCHHHHHHHHHHHHHHcCCh------hhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHH
Confidence 32 1233445543 22456677899999999999999999999999999 578899999999
Q ss_pred HHHHHHHhcCCCcEEEEecccccH-HHHHchh
Q 005605 205 GLLKEVLKNRPDLKLVVMSATLEA-EKFQGYF 235 (688)
Q Consensus 205 ~~l~~i~~~~~~~~vil~SAT~~~-~~~~~~~ 235 (688)
++|+++.++. ++.+++++|.|++ ..+|+..
T Consensus 182 ~LL~~In~~l-glTIvlITHEm~Vvk~ic~rV 212 (339)
T COG1135 182 ELLKDINREL-GLTIVLITHEMEVVKRICDRV 212 (339)
T ss_pred HHHHHHHHHc-CCEEEEEechHHHHHHHhhhh
Confidence 9999999887 9999999999975 6677653
No 125
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.40 E-value=5.5e-13 Score=132.69 Aligned_cols=142 Identities=18% Similarity=0.263 Sum_probs=100.9
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHh-----------cCccCCCccccCceEEEEcCC--chhhhccHHHHHHHhhccc-
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVL-----------EGVDIETPDRRRKMMIACTQP--RRVAAMSVSRRVAEEMDVT- 143 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll-----------~~~~~~~~~~~~~~~i~~t~p--~~~~~~~v~~~v~~~~~~~- 143 (688)
+..|+.+.|+||||+||||++..++= .+...........+.++|++. ....-++|.+-+...+...
T Consensus 27 v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~ 106 (254)
T COG1121 27 VEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKK 106 (254)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccc
Confidence 67899999999999999999986542 111011111123567778765 2333467777665432211
Q ss_pred ----------------ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHH
Q 005605 144 ----------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (688)
Q Consensus 144 ----------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ 205 (688)
..+.||.. ...+..|..+|+|+++|+++++++++++++++||| +..|......+.+
T Consensus 107 g~~~~~~~~d~~~v~~aL~~Vgm~------~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~ 180 (254)
T COG1121 107 GWFRRLNKKDKEKVDEALERVGME------DLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYD 180 (254)
T ss_pred cccccccHHHHHHHHHHHHHcCch------hhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHH
Confidence 12223321 23467788999999999999999999999999999 5667788888999
Q ss_pred HHHHHHhcCCCcEEEEeccccc
Q 005605 206 LLKEVLKNRPDLKLVVMSATLE 227 (688)
Q Consensus 206 ~l~~i~~~~~~~~vil~SAT~~ 227 (688)
+++++.++ +..+++.||.++
T Consensus 181 lL~~l~~e--g~tIl~vtHDL~ 200 (254)
T COG1121 181 LLKELRQE--GKTVLMVTHDLG 200 (254)
T ss_pred HHHHHHHC--CCEEEEEeCCcH
Confidence 99998776 889999999984
No 126
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.39 E-value=3.5e-13 Score=134.82 Aligned_cols=157 Identities=20% Similarity=0.281 Sum_probs=112.5
Q ss_pred HhcCCEEEEEeCCCCChhcchhH-----------HHhcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhccc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~-----------~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (688)
+.+|++++|+|||||||||++.. +.+++.++.. ....+.+.++|+.+.....++|.+-+...+.-.
T Consensus 25 i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~ 104 (258)
T COG1120 25 IPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPH 104 (258)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcc
Confidence 57899999999999999999873 3444443322 223456788898887777788887776554321
Q ss_pred ccceecee----------eeeccc-ccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHH
Q 005605 144 IGEEVGYS----------IRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (688)
Q Consensus 144 ~~~~vg~~----------~~~~~~-~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i 210 (688)
.+....++ ...-+. ......+..+|+|+.++++++++++.++++++||| .|+|..+...++++++++
T Consensus 105 ~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l 184 (258)
T COG1120 105 LGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDL 184 (258)
T ss_pred cccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHH
Confidence 11000000 000001 12345677899999999999999999999999999 788888888899999999
Q ss_pred HhcCCCcEEEEeccccc-HHHHHchh
Q 005605 211 LKNRPDLKLVVMSATLE-AEKFQGYF 235 (688)
Q Consensus 211 ~~~~~~~~vil~SAT~~-~~~~~~~~ 235 (688)
.++. +..+|+..|.++ +..+++++
T Consensus 185 ~~~~-~~tvv~vlHDlN~A~ryad~~ 209 (258)
T COG1120 185 NREK-GLTVVMVLHDLNLAARYADHL 209 (258)
T ss_pred HHhc-CCEEEEEecCHHHHHHhCCEE
Confidence 8765 889999999996 45677653
No 127
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.36 E-value=1e-12 Score=124.72 Aligned_cols=162 Identities=24% Similarity=0.394 Sum_probs=112.1
Q ss_pred HHhcCCEEEEEeCCCCChhcchh----------------HHHhcCccCCCc-----cccCceEEEEcCCchhhhccHHHH
Q 005605 77 VLKANQVIILVGETGSGKTTQIP----------------QFVLEGVDIETP-----DRRRKMMIACTQPRRVAAMSVSRR 135 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~----------------~~ll~~~~~~~~-----~~~~~~~i~~t~p~~~~~~~v~~~ 135 (688)
.|.++++++++||+||||||++. .+++++.++-.. ..++.+++++++|.... ++++++
T Consensus 29 ~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydN 107 (253)
T COG1117 29 DIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDN 107 (253)
T ss_pred eccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHH
Confidence 35789999999999999999987 233444333221 22456789999999888 999999
Q ss_pred HHHhhccc------ccceeceeeee-----cccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHH
Q 005605 136 VAEEMDVT------IGEEVGYSIRF-----EDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (688)
Q Consensus 136 v~~~~~~~------~~~~vg~~~~~-----~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ 202 (688)
++-..... +.+.|..+.+. +-....+....-+|+|+.+|+++++++.-+|++|++|| ..+|+..+.-
T Consensus 108 VayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~k 187 (253)
T COG1117 108 VAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLK 187 (253)
T ss_pred HHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHH
Confidence 97543211 00111111111 11112234445699999999999999999999999999 6678999999
Q ss_pred HHHHHHHHHhcCCCcEEEEecccc-cHHHHH---chhcCCCeee
Q 005605 203 LFGLLKEVLKNRPDLKLVVMSATL-EAEKFQ---GYFYGAPLMK 242 (688)
Q Consensus 203 ll~~l~~i~~~~~~~~vil~SAT~-~~~~~~---~~~~~~p~~~ 242 (688)
+.+++.++.+ +..+|+++|.| .+.+.+ .||....++.
T Consensus 188 IEeLi~eLk~---~yTIviVTHnmqQAaRvSD~taFf~~G~LvE 228 (253)
T COG1117 188 IEELITELKK---KYTIVIVTHNMQQAARVSDYTAFFYLGELVE 228 (253)
T ss_pred HHHHHHHHHh---ccEEEEEeCCHHHHHHHhHhhhhhcccEEEE
Confidence 9999988864 56999999999 444544 4455444444
No 128
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.33 E-value=2.8e-12 Score=124.85 Aligned_cols=152 Identities=24% Similarity=0.340 Sum_probs=107.8
Q ss_pred HhcCCEEEEEeCCCCChhcchhHH-----------HhcCccCCCc----cccCceEEEEcCCchh--hhccHHHHHHHhh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIETP----DRRRKMMIACTQPRRV--AAMSVSRRVAEEM 140 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~-----------ll~~~~~~~~----~~~~~~~i~~t~p~~~--~~~~v~~~v~~~~ 140 (688)
+..|+.++|+|++||||||+.... .+++...... ...+.+.++++.|... +..++-+-+.+.+
T Consensus 30 i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl 109 (252)
T COG1124 30 IERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPL 109 (252)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhh
Confidence 578999999999999999987743 2333222211 1234566788877432 2344544444433
Q ss_pred c-----------ccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHH
Q 005605 141 D-----------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (688)
Q Consensus 141 ~-----------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l 207 (688)
. ..+...||... ......+..+|+|+++|+++++++..++++||+|| .-+|......+++++
T Consensus 110 ~~~~~~~~~~~i~~~L~~VgL~~-----~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL 184 (252)
T COG1124 110 RPHGLSKSQQRIAELLDQVGLPP-----SFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLL 184 (252)
T ss_pred ccCCccHHHHHHHHHHHHcCCCH-----HHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHH
Confidence 2 23334455331 22456778899999999999999999999999999 456777788899999
Q ss_pred HHHHhcCCCcEEEEeccccc-HHHHHchh
Q 005605 208 KEVLKNRPDLKLVVMSATLE-AEKFQGYF 235 (688)
Q Consensus 208 ~~i~~~~~~~~vil~SAT~~-~~~~~~~~ 235 (688)
.++.+.+ ++..|++||.+. ++.+|+..
T Consensus 185 ~~l~~~~-~lt~l~IsHdl~~v~~~cdRi 212 (252)
T COG1124 185 LELKKER-GLTYLFISHDLALVEHMCDRI 212 (252)
T ss_pred HHHHHhc-CceEEEEeCcHHHHHHHhhhe
Confidence 9998887 899999999996 46677653
No 129
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.32 E-value=1.9e-12 Score=134.53 Aligned_cols=157 Identities=17% Similarity=0.245 Sum_probs=110.5
Q ss_pred HHhcCCEEEEEeCCCCChhcchhH-----------HHhcCccCCC-ccccCceEEEEcCCchhhhccHHHHHHHhhcccc
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTI 144 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~-----------~ll~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~ 144 (688)
.+.+|+.+++.||+||||||++.. +.+++.+.+. +...+++.++++..-....++|+++++..+...-
T Consensus 25 ~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~ 104 (338)
T COG3839 25 DIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRG 104 (338)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCC
Confidence 367899999999999999999874 3344443433 3345688999999999999999999986554211
Q ss_pred ------cceeceeeee-cccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCC
Q 005605 145 ------GEEVGYSIRF-EDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRP 215 (688)
Q Consensus 145 ------~~~vg~~~~~-~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~ 215 (688)
-..|.-.... +-....+..+..+|+|+.+|+++++++..+|+++.+|| ..+|.-....+...++++.++.
T Consensus 105 ~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l- 183 (338)
T COG3839 105 VPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERL- 183 (338)
T ss_pred CchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhc-
Confidence 1111100000 01123467788999999999999999999999999999 4444444555667777766655
Q ss_pred CcEEEEecccc-cHHHHHch
Q 005605 216 DLKLVVMSATL-EAEKFQGY 234 (688)
Q Consensus 216 ~~~vil~SAT~-~~~~~~~~ 234 (688)
+..+|..||+. ++-.+++.
T Consensus 184 ~~T~IYVTHDq~EAmtladr 203 (338)
T COG3839 184 GTTTIYVTHDQVEAMTLADR 203 (338)
T ss_pred CCcEEEEcCCHHHHHhhCCE
Confidence 77889999987 44445443
No 130
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.26 E-value=5.7e-12 Score=121.78 Aligned_cols=150 Identities=22% Similarity=0.336 Sum_probs=111.8
Q ss_pred HhcCCEEEEEeCCCCChhcchhH-----------HHhcCccCCC------ccccCceEEEEcCCchhhhccHHHHHHHhh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIET------PDRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~-----------~ll~~~~~~~------~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (688)
|.+|+.++|+|++||||||++.. +.+++.+..+ ...++.++++++++-.+.-.++.+++...+
T Consensus 27 I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~gr 106 (258)
T COG3638 27 INQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGR 106 (258)
T ss_pred eCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhh
Confidence 67899999999999999999873 2233322222 112456789999999999999999985432
Q ss_pred c---------------------ccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcCh
Q 005605 141 D---------------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERT 197 (688)
Q Consensus 141 ~---------------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~ 197 (688)
- ....+.+|.. .....+...+|+|+.+|+.+++++..++++++-|| +-+|+
T Consensus 107 l~~~s~~~slfglfsk~dk~~Al~aLervgi~------~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp 180 (258)
T COG3638 107 LGYTSTWRSLFGLFSKEDKAQALDALERVGIL------DKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDP 180 (258)
T ss_pred cccchHHHHHhCCCCHHHHHHHHHHHHHcCcH------HHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccCh
Confidence 1 1111222211 11234556799999999999999999999999999 78899
Q ss_pred hhHHHHHHHHHHHHhcCCCcEEEEecccccH-HHHHch
Q 005605 198 LATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (688)
Q Consensus 198 ~~~d~ll~~l~~i~~~~~~~~vil~SAT~~~-~~~~~~ 234 (688)
.....+++.++++.++. +..+|+..|+++. ..+++.
T Consensus 181 ~~a~~Vm~~l~~in~~~-g~Tvi~nLH~vdlA~~Y~~R 217 (258)
T COG3638 181 ESAKKVMDILKDINQED-GITVIVNLHQVDLAKKYADR 217 (258)
T ss_pred hhHHHHHHHHHHHHHHc-CCEEEEEechHHHHHHHHhh
Confidence 99999999999998876 8999999999864 445544
No 131
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.26 E-value=9.6e-12 Score=116.28 Aligned_cols=146 Identities=20% Similarity=0.336 Sum_probs=107.8
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhc----
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMD---- 141 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~---- 141 (688)
.|.+|+.+++.||+||||||++.... +++..+..+.. ...++++.+..+..+++.++++..+.
T Consensus 27 ~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga--ergvVFQ~~~LlPWl~~~dNvafgL~l~Gi 104 (259)
T COG4525 27 TIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA--ERGVVFQNEALLPWLNVIDNVAFGLQLRGI 104 (259)
T ss_pred eecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc--cceeEeccCccchhhHHHHHHHHHHHhcCC
Confidence 46789999999999999999987432 22222222221 34588999999999999999975432
Q ss_pred ---------ccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHH
Q 005605 142 ---------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (688)
Q Consensus 142 ---------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i 210 (688)
......||.. ...+..|..+|+|+.+|+-+++++.-+|+++.+|| ...|.+..+.+..++-++
T Consensus 105 ~k~~R~~~a~q~l~~VgL~------~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldl 178 (259)
T COG4525 105 EKAQRREIAHQMLALVGLE------GAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDL 178 (259)
T ss_pred CHHHHHHHHHHHHHHhCcc------cccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHH
Confidence 1223344533 22356788899999999999999999999999999 334567777777888887
Q ss_pred HhcCCCcEEEEecccccHHHH
Q 005605 211 LKNRPDLKLVVMSATLEAEKF 231 (688)
Q Consensus 211 ~~~~~~~~vil~SAT~~~~~~ 231 (688)
.+.. +.++++++|.++...|
T Consensus 179 w~~t-gk~~lliTH~ieEAlf 198 (259)
T COG4525 179 WQET-GKQVLLITHDIEEALF 198 (259)
T ss_pred HHHh-CCeEEEEeccHHHHHh
Confidence 7776 8899999999965543
No 132
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.25 E-value=9.1e-12 Score=120.75 Aligned_cols=153 Identities=21% Similarity=0.294 Sum_probs=116.0
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC------ccccCceEEEEcCCchhhhccHHHHHHHh
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET------PDRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~------~~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (688)
.+.+|++++|.|++||||||++..++ +++.++.. ....+++++++++--....++|+++++..
T Consensus 30 ~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafp 109 (263)
T COG1127 30 DVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFP 109 (263)
T ss_pred eecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhhee
Confidence 36789999999999999999998544 33332222 11234678899988888899999999753
Q ss_pred hcc--------------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHH
Q 005605 140 MDV--------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (688)
Q Consensus 140 ~~~--------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~l 203 (688)
+.. .-.+.||..- ...+..+..+|+|+..|..+++++..+|+++++|| +.+|+.....+
T Consensus 110 lre~~~lp~~~i~~lv~~KL~~VGL~~-----~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~ 184 (263)
T COG1127 110 LREHTKLPESLIRELVLMKLELVGLRG-----AAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVI 184 (263)
T ss_pred hHhhccCCHHHHHHHHHHHHHhcCCCh-----hhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHH
Confidence 211 1123344321 11345667899999999999999999999999999 88999999999
Q ss_pred HHHHHHHHhcCCCcEEEEeccccc-HHHHHchh
Q 005605 204 FGLLKEVLKNRPDLKLVVMSATLE-AEKFQGYF 235 (688)
Q Consensus 204 l~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~~ 235 (688)
-++++++.... +.+++++||.++ ....++++
T Consensus 185 ~~LI~~L~~~l-g~T~i~VTHDl~s~~~i~Drv 216 (263)
T COG1127 185 DELIRELNDAL-GLTVIMVTHDLDSLLTIADRV 216 (263)
T ss_pred HHHHHHHHHhh-CCEEEEEECChHHHHhhhceE
Confidence 99999998776 899999999995 45666664
No 133
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.24 E-value=7e-12 Score=104.20 Aligned_cols=71 Identities=37% Similarity=0.450 Sum_probs=67.8
Q ss_pred CeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeee
Q 005605 312 PVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSP 391 (688)
Q Consensus 312 ~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p 391 (688)
++.+..+||+++.++|..+++.|..+ ..+|+++|+++++|+|+|++++||.++. |
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~-------~~~vli~t~~~~~Gi~~~~~~~vi~~~~------------------~ 65 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNG-------KIKVLVATDVAERGLDLPGVDLVIIYDL------------------P 65 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcC-------CCeEEEECChhhCCcChhcCCEEEEeCC------------------C
Confidence 68899999999999999999999988 7799999999999999999999999888 9
Q ss_pred cchhhHHhhccccCCC
Q 005605 392 ISKASAHQRSGRAGRT 407 (688)
Q Consensus 392 ~s~~~~~qR~GRaGR~ 407 (688)
.+...|.||+||+||.
T Consensus 66 ~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 66 WSPASYIQRIGRAGRA 81 (82)
T ss_pred CCHHHHHHhhcccccC
Confidence 9999999999999996
No 134
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.24 E-value=5.6e-12 Score=122.75 Aligned_cols=153 Identities=21% Similarity=0.310 Sum_probs=114.9
Q ss_pred HHhcCCEEEEEeCCCCChhcchhH-----------HHhcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHh---
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEE--- 139 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~-----------~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~--- 139 (688)
.|.+|+.++++||+||||||++.. +.+++.++.. ...++.++++.++--....++++++++.-
T Consensus 23 ~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L 102 (309)
T COG1125 23 TIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKL 102 (309)
T ss_pred EecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhh
Confidence 367899999999999999999872 3344444333 12345677888888888899999998632
Q ss_pred ----------hcccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHH
Q 005605 140 ----------MDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (688)
Q Consensus 140 ----------~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l 207 (688)
+...+...+|.. ........+..+|+|+.+|+-++++++.++.++++|| .-.|+.....+.+.+
T Consensus 103 ~~w~k~~i~~r~~ELl~lvgL~----p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~ 178 (309)
T COG1125 103 LGWDKERIKKRADELLDLVGLD----PSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEI 178 (309)
T ss_pred cCCCHHHHHHHHHHHHHHhCCC----HHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHH
Confidence 112233444432 1123456778899999999999999999999999999 346889999999999
Q ss_pred HHHHhcCCCcEEEEecccccH-HHHHch
Q 005605 208 KEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (688)
Q Consensus 208 ~~i~~~~~~~~vil~SAT~~~-~~~~~~ 234 (688)
+++.++. +.++|++||+++. -++++.
T Consensus 179 ~~lq~~l-~kTivfVTHDidEA~kLadr 205 (309)
T COG1125 179 KELQKEL-GKTIVFVTHDIDEALKLADR 205 (309)
T ss_pred HHHHHHh-CCEEEEEecCHHHHHhhhce
Confidence 9988876 7899999999964 456554
No 135
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.24 E-value=1.4e-11 Score=114.96 Aligned_cols=143 Identities=21% Similarity=0.291 Sum_probs=106.9
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHHhcC-----------ccCCC------ccccCceEEEEcCCchhhhccHHHHHHHh
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFVLEG-----------VDIET------PDRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~-----------~~~~~------~~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (688)
.+..|+.+.++||+|+||||++.++..+. .++.. +..++.++++++.-+.+.-.+++++++-.
T Consensus 24 ~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 24 HIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred eecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 46789999999999999999998655432 22222 22356788999998889999999999754
Q ss_pred hc-------------ccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHH
Q 005605 140 MD-------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (688)
Q Consensus 140 ~~-------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll 204 (688)
+. ..+.+.||.. ...+.-+..+|+|+.+|+.+++++.++|.+++.|| ...|+-....++
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~------~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im 177 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLK------HKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIM 177 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccc------hhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHH
Confidence 42 1223444533 22345567899999999999999999999999999 445666666788
Q ss_pred HHHHHHHhcCCCcEEEEeccccc
Q 005605 205 GLLKEVLKNRPDLKLVVMSATLE 227 (688)
Q Consensus 205 ~~l~~i~~~~~~~~vil~SAT~~ 227 (688)
.++.++.+. +..+++.||..+
T Consensus 178 ~lfeeinr~--GtTVl~ATHd~~ 198 (223)
T COG2884 178 RLFEEINRL--GTTVLMATHDLE 198 (223)
T ss_pred HHHHHHhhc--CcEEEEEeccHH
Confidence 888887655 778888888753
No 136
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.23 E-value=5.2e-10 Score=126.87 Aligned_cols=280 Identities=17% Similarity=0.184 Sum_probs=171.2
Q ss_pred HHHhcCCCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHH
Q 005605 59 LEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAE 138 (688)
Q Consensus 59 l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~ 138 (688)
.++..-.++|..|.-....+..|+-..|+||||.||||.....-+--. . ...+..+|+||.++..|+..-.+.+++
T Consensus 75 F~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a---~-kgkr~yii~PT~~Lv~Q~~~kl~~~~e 150 (1187)
T COG1110 75 FKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLA---K-KGKRVYIIVPTTTLVRQVYERLKKFAE 150 (1187)
T ss_pred HHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHH---h-cCCeEEEEecCHHHHHHHHHHHHHHHh
Confidence 333334488999999999999999999999999999997654332211 0 113456788888887776655555555
Q ss_pred hhcccccceeceeeeec---------ccccccccccccCHHHHHHHHhcccccc--CCcEEeecccC---cChhhHHHHH
Q 005605 139 EMDVTIGEEVGYSIRFE---------DCSSARTVLKYLTDGMLLREAMTDPLLE--RYKVIVLDEAH---ERTLATDVLF 204 (688)
Q Consensus 139 ~~~~~~~~~vg~~~~~~---------~~~~~~~~i~~lT~G~l~~~~~~~~ll~--~~~~lIlDEah---er~~~~d~ll 204 (688)
..+ .....+.|..... ...+.+-+|.+.|..-+.+..- .|. +++++++|.+| ..+-+.|-++
T Consensus 151 ~~~-~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e---~L~~~kFdfifVDDVDA~LkaskNvDriL 226 (1187)
T COG1110 151 DAG-SLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFE---ELSKLKFDFIFVDDVDAILKASKNVDRLL 226 (1187)
T ss_pred hcC-CcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHH---HhcccCCCEEEEccHHHHHhccccHHHHH
Confidence 444 2222222322111 1122345566667666544322 233 78999999976 1122333322
Q ss_pred HHHH-----------------HHH---------------------hcCCCcEEEEecccccH-----HHHHchhcCCCee
Q 005605 205 GLLK-----------------EVL---------------------KNRPDLKLVVMSATLEA-----EKFQGYFYGAPLM 241 (688)
Q Consensus 205 ~~l~-----------------~i~---------------------~~~~~~~vil~SAT~~~-----~~~~~~~~~~p~~ 241 (688)
.++- .+. ++...-++|+.|||..+ ..|...++= .+=
T Consensus 227 ~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgF-evG 305 (1187)
T COG1110 227 RLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGF-EVG 305 (1187)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCC-ccC
Confidence 2211 100 11124578999999943 334444431 111
Q ss_pred eeCCcccccceeecCCCchhHHHHHHHHHHHHHhcCCCCCEEEecCc---HHHHHHHHHHHHHHHhhcCCCCCCeEEEEe
Q 005605 242 KVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTG---EEEIEDACRKITKEITNMGDQVGPVKVVPL 318 (688)
Q Consensus 242 ~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~---~~~i~~~~~~L~~~~~~~~~~~~~~~v~~l 318 (688)
.......+|...|...+... ...+ +...-.. ..|||+|. ++.++++++.|... ++++...
T Consensus 306 ~~~~~LRNIvD~y~~~~~~e---~~~e----lvk~lG~-GgLIfV~~d~G~e~aeel~e~Lr~~---------Gi~a~~~ 368 (1187)
T COG1110 306 SGGEGLRNIVDIYVESESLE---KVVE----LVKKLGD-GGLIFVPIDYGREKAEELAEYLRSH---------GINAELI 368 (1187)
T ss_pred ccchhhhheeeeeccCccHH---HHHH----HHHHhCC-CeEEEEEcHHhHHHHHHHHHHHHhc---------CceEEEe
Confidence 11111345555555543222 2222 2222233 47999998 99999999999874 8999999
Q ss_pred cCCCCHHHhhcccCCCCCCCCCCCCCceEEEEec----CccccCcccCCe-EEEEcCCcccce
Q 005605 319 YSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVST----NIAETSLTIDGI-VYVIDPGFAKQK 376 (688)
Q Consensus 319 h~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaT----niae~gi~i~~V-~~VId~g~~k~~ 376 (688)
|+. ..+.++.|..| ...++|.. +++-||||.|.. +|+|=+|..|.+
T Consensus 369 ~a~-----~~~~le~F~~G-------eidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk~r 419 (1187)
T COG1110 369 HAE-----KEEALEDFEEG-------EVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPKFR 419 (1187)
T ss_pred ecc-----chhhhhhhccC-------ceeEEEEecccccceeecCCchhheeEEEEecCCcee
Confidence 984 26678999999 78888754 678999999975 999999999765
No 137
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.21 E-value=1.2e-11 Score=129.49 Aligned_cols=151 Identities=26% Similarity=0.329 Sum_probs=111.7
Q ss_pred HHhcCCEEEEEeCCCCChhcchhH-----------HHhcCccCCC-ccccCceEEEEcCCchhhhccHHHHHHHhhccc-
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT- 143 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~-----------~ll~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~- 143 (688)
.|.+|+++.+.||+||||||++.. +.+++.++.. +...+.+.++++.--..+.++|+++++..+...
T Consensus 27 ~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~ 106 (352)
T COG3842 27 DIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRK 106 (352)
T ss_pred eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcC
Confidence 367899999999999999999873 4455554443 334567889999988899999999998665411
Q ss_pred -------------ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHH
Q 005605 144 -------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (688)
Q Consensus 144 -------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~ 208 (688)
....|+.. ...+..+..+|+|+.+|+++++++..+|++++||| ..+|.-....+..-++
T Consensus 107 ~~~~~~i~~rv~e~L~lV~L~------~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk 180 (352)
T COG3842 107 KLKKAEIKARVEEALELVGLE------GFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELK 180 (352)
T ss_pred CCCHHHHHHHHHHHHHHcCch------hhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHH
Confidence 11112211 23467788999999999999999999999999999 3344445555677777
Q ss_pred HHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 209 EVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 209 ~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
++.++. +...|++||.-. +-.+++.
T Consensus 181 ~lq~~~-giT~i~VTHDqeEAl~msDr 206 (352)
T COG3842 181 ELQREL-GITFVYVTHDQEEALAMSDR 206 (352)
T ss_pred HHHHhc-CCeEEEEECCHHHHhhhccc
Confidence 777766 899999999973 3445543
No 138
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.21 E-value=2.9e-11 Score=128.47 Aligned_cols=150 Identities=22% Similarity=0.333 Sum_probs=108.7
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc------cccCceEEEEcCCchhhhccHHHHHHHhh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP------DRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~------~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (688)
+.+|+.++|+|++||||||++..+. +++.++... ...+.+.++++.+......++.++++...
T Consensus 28 i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~ 107 (343)
T TIGR02314 28 VPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPL 107 (343)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHH
Confidence 5789999999999999999987432 233222211 01345778888877776788888886432
Q ss_pred cc-------------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHH
Q 005605 141 DV-------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (688)
Q Consensus 141 ~~-------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ 205 (688)
.. .+...+|.. ...+..+..+|+|+.+|+.++++++.+++++++|| +++|......++.
T Consensus 108 ~~~~~~~~~~~~~v~e~l~~vgL~------~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~ 181 (343)
T TIGR02314 108 ELDNTPKDEIKRKVTELLALVGLG------DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILE 181 (343)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCc------hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHH
Confidence 11 111222221 12355677899999999999999999999999999 6788888889999
Q ss_pred HHHHHHhcCCCcEEEEecccccH-HHHHch
Q 005605 206 LLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (688)
Q Consensus 206 ~l~~i~~~~~~~~vil~SAT~~~-~~~~~~ 234 (688)
+++++.+.. +..+|+.||.++. ..+++.
T Consensus 182 lL~~l~~~~-g~tiiliTH~~~~v~~~~d~ 210 (343)
T TIGR02314 182 LLKEINRRL-GLTILLITHEMDVVKRICDC 210 (343)
T ss_pred HHHHHHHhc-CCEEEEEeCCHHHHHHhCCE
Confidence 999987654 6899999999854 456654
No 139
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.20 E-value=3e-11 Score=129.08 Aligned_cols=150 Identities=19% Similarity=0.308 Sum_probs=108.9
Q ss_pred HhcCCEEEEEeCCCCChhcchhHH-----------HhcCccCCCcc---c----cCceEEEEcCCchhhhccHHHHHHHh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIETPD---R----RRKMMIACTQPRRVAAMSVSRRVAEE 139 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~-----------ll~~~~~~~~~---~----~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (688)
+..|+.++|+|++||||||++..+ .+++.++.... . .+.+.++++++.....+++.++++..
T Consensus 16 i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~ 95 (363)
T TIGR01186 16 IAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLG 95 (363)
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHH
Confidence 568999999999999999998732 33343332211 1 34678888888777778998888643
Q ss_pred hc-------------ccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHH
Q 005605 140 MD-------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (688)
Q Consensus 140 ~~-------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll 204 (688)
.. ..+...+|.. ...+..+..+|+|+.+|+.++++++.+++++++|| +.+|......+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~~vgL~------~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~ 169 (363)
T TIGR01186 96 PELLGWPEQERKEKALELLKLVGLE------EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQ 169 (363)
T ss_pred HHHcCCCHHHHHHHHHHHHHhcCCc------hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 21 1112222221 12456677899999999999999999999999999 677888888899
Q ss_pred HHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 205 GLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 205 ~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
+.+..+.+.. +..+|+.||.++ +..+++.
T Consensus 170 ~~l~~l~~~~-~~Tii~vTHd~~ea~~~~dr 199 (363)
T TIGR01186 170 DELKKLQATL-QKTIVFITHDLDEAIRIGDR 199 (363)
T ss_pred HHHHHHHHhc-CCEEEEEeCCHHHHHHhCCE
Confidence 9988886644 678999999996 4556554
No 140
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.20 E-value=3.1e-11 Score=129.26 Aligned_cols=150 Identities=15% Similarity=0.185 Sum_probs=108.4
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC-ccccCceEEEEcCCchhhhccHHHHHHHhhcc---
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (688)
+..|+.++|.||+||||||++..+. +++.++.. ....+.+.++++.+.....+++.++++.....
T Consensus 27 i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~ 106 (356)
T PRK11650 27 VADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGM 106 (356)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCC
Confidence 5689999999999999999987432 23322221 11234678888888777788999988654321
Q ss_pred ----------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHH
Q 005605 143 ----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (688)
Q Consensus 143 ----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i 210 (688)
.+...+|.. ...+..+..+|+|+.+|+.++++++.++++++||| +++|......+...++++
T Consensus 107 ~~~~~~~~~~~~l~~~gL~------~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l 180 (356)
T PRK11650 107 PKAEIEERVAEAARILELE------PLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRL 180 (356)
T ss_pred CHHHHHHHHHHHHHHcCCh------hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 011111211 12356677899999999999999999999999999 677777788888888888
Q ss_pred HhcCCCcEEEEeccccc-HHHHHch
Q 005605 211 LKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 211 ~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
.+.. +..+|+.||..+ +..+++.
T Consensus 181 ~~~~-g~tii~vTHd~~ea~~l~D~ 204 (356)
T PRK11650 181 HRRL-KTTSLYVTHDQVEAMTLADR 204 (356)
T ss_pred HHhc-CCEEEEEeCCHHHHHHhCCE
Confidence 7654 689999999984 4556654
No 141
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.20 E-value=2.7e-11 Score=126.27 Aligned_cols=150 Identities=22% Similarity=0.348 Sum_probs=110.0
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC--ccccCceEEEEcCCchhhhccHHHHHHH---hhc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAE---EMD 141 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~---~~~ 141 (688)
+.+|+++++.|||||||||++.... +.+.+... ....+.+++++..|.....+++.+.+.. .++
T Consensus 28 i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~ 107 (293)
T COG1131 28 VEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYG 107 (293)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhC
Confidence 5789999999999999999987432 22221111 1123457899999988888888877643 222
Q ss_pred c----------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHH
Q 005605 142 V----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (688)
Q Consensus 142 ~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~ 209 (688)
. .+...+|.. ...+..+..+|.|+.+|+.++.+++.+|+++|||| .++|+.....+.++++.
T Consensus 108 ~~~~~~~~~~~~~l~~~~L~------~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~ 181 (293)
T COG1131 108 LSKEEAEERIEELLELFGLE------DKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRE 181 (293)
T ss_pred CChhHHHHHHHHHHHHcCCc------hhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHH
Confidence 1 122223322 11256688899999999999999999999999999 78888999999999999
Q ss_pred HHhcCCCcEEEEecccc-cHHHHHch
Q 005605 210 VLKNRPDLKLVVMSATL-EAEKFQGY 234 (688)
Q Consensus 210 i~~~~~~~~vil~SAT~-~~~~~~~~ 234 (688)
+.+.. +..+++.||-+ +++.++++
T Consensus 182 l~~~g-~~tvlissH~l~e~~~~~d~ 206 (293)
T COG1131 182 LAKEG-GVTILLSTHILEEAEELCDR 206 (293)
T ss_pred HHhCC-CcEEEEeCCcHHHHHHhCCE
Confidence 87763 47899999999 45666764
No 142
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.19 E-value=3.5e-11 Score=128.50 Aligned_cols=150 Identities=17% Similarity=0.260 Sum_probs=108.4
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC-ccccCceEEEEcCCchhhhccHHHHHHHhhcc---
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (688)
+..|+.++|.||+||||||++..+. +++.++.. +...+.+.++++.+.....+++.++++.....
T Consensus 29 i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~ 108 (351)
T PRK11432 29 IKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGV 108 (351)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCC
Confidence 5689999999999999999987432 22222211 11235677888888777788999998754321
Q ss_pred ----------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHH
Q 005605 143 ----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (688)
Q Consensus 143 ----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i 210 (688)
.+...+|.. ...+..+..+|+|+.+|+.++++++.++++++||| +.+|......+...++.+
T Consensus 109 ~~~~~~~~v~~~l~~~gl~------~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 182 (351)
T PRK11432 109 PKEERKQRVKEALELVDLA------GFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIREL 182 (351)
T ss_pred CHHHHHHHHHHHHHHcCCc------hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 011122211 12356677899999999999999999999999999 777778888888888888
Q ss_pred HhcCCCcEEEEeccccc-HHHHHch
Q 005605 211 LKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 211 ~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
.+.. +..+|+.||..+ +..+++.
T Consensus 183 ~~~~-g~tii~vTHd~~e~~~laD~ 206 (351)
T PRK11432 183 QQQF-NITSLYVTHDQSEAFAVSDT 206 (351)
T ss_pred HHhc-CCEEEEEcCCHHHHHHhCCE
Confidence 7654 678999999984 4456654
No 143
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.19 E-value=2e-11 Score=122.06 Aligned_cols=150 Identities=22% Similarity=0.312 Sum_probs=106.3
Q ss_pred HhcCCEEEEEeCCCCChhcchhH-----------HHhcCccCC----CccccCceEEEEcCCchh-hhccHHHHHHHhh-
Q 005605 78 LKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIE----TPDRRRKMMIACTQPRRV-AAMSVSRRVAEEM- 140 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~-----------~ll~~~~~~----~~~~~~~~~i~~t~p~~~-~~~~v~~~v~~~~- 140 (688)
+.+|+.++++|+|||||||++.. +.+++.+.. ....++.+.++++.|... ..-+|.+.++...
T Consensus 27 i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~ 106 (235)
T COG1122 27 IEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLE 106 (235)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchh
Confidence 56899999999999999999873 222332211 011234577888888543 4456777765322
Q ss_pred --cc----------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHH
Q 005605 141 --DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL 206 (688)
Q Consensus 141 --~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~ 206 (688)
+. .....+|.. ...+..+..+|+|+.+|+.++..++.+++++|||| +.+|......++.+
T Consensus 107 n~g~~~~e~~~rv~~~l~~vgl~------~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~ 180 (235)
T COG1122 107 NLGLPREEIEERVAEALELVGLE------ELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLEL 180 (235)
T ss_pred hcCCCHHHHHHHHHHHHHHcCch------hhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 11 112223322 12456788899999999999999999999999999 77888888889999
Q ss_pred HHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 207 LKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 207 l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
++++.... +..+|+.||.++ +..++++
T Consensus 181 l~~L~~~~-~~tii~~tHd~~~~~~~ad~ 208 (235)
T COG1122 181 LKKLKEEG-GKTIIIVTHDLELVLEYADR 208 (235)
T ss_pred HHHHHhcC-CCeEEEEeCcHHHHHhhCCE
Confidence 99987764 678999999984 3445544
No 144
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.18 E-value=1.6e-09 Score=129.14 Aligned_cols=140 Identities=17% Similarity=0.173 Sum_probs=90.5
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCC
Q 005605 260 RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSK 339 (688)
Q Consensus 260 ~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~ 339 (688)
.++.+.....+..+... .+|++|||+++.+..+.+++.|..... ..++.++. .+.. ..|.++++.|+.+
T Consensus 656 ~~~~~~ia~~i~~l~~~-~~g~~LVlftS~~~l~~v~~~L~~~~~-----~~~~~~l~--q~~~-~~r~~ll~~F~~~-- 724 (850)
T TIGR01407 656 EEYAQEIASYIIEITAI-TSPKILVLFTSYEMLHMVYDMLNELPE-----FEGYEVLA--QGIN-GSRAKIKKRFNNG-- 724 (850)
T ss_pred HHHHHHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHhhhcc-----ccCceEEe--cCCC-ccHHHHHHHHHhC--
Confidence 34555666667666553 468999999999999999999875211 01344333 2222 4677888889887
Q ss_pred CCCCCceEEEEecCccccCcccCCeE--EEEcCCcccceeecCC----------CCccc--ceeeecchhhHHhhccccC
Q 005605 340 EGGPPGRKIVVSTNIAETSLTIDGIV--YVIDPGFAKQKVYNPR----------VRVES--LLVSPISKASAHQRSGRAG 405 (688)
Q Consensus 340 ~~~~~~~kvlvaTniae~gi~i~~V~--~VId~g~~k~~~~~~~----------~~~~~--l~~~p~s~~~~~qR~GRaG 405 (688)
...|+++|+.+..|||+||.. .||=.++.-..--||. .|-+. -...|...-...|-+||.=
T Consensus 725 -----~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlI 799 (850)
T TIGR01407 725 -----EKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLI 799 (850)
T ss_pred -----CCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhcccc
Confidence 778999999999999999885 4554555322111110 01111 1112555566789999999
Q ss_pred CC--CCceEEEc
Q 005605 406 RT--QPGKCFRL 415 (688)
Q Consensus 406 R~--~~G~~~~l 415 (688)
|. ..|..+-|
T Consensus 800 Rs~~D~G~v~il 811 (850)
T TIGR01407 800 RRENDRGSIVIL 811 (850)
T ss_pred ccCCceEEEEEE
Confidence 98 45776644
No 145
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.18 E-value=4.5e-11 Score=127.85 Aligned_cols=150 Identities=21% Similarity=0.287 Sum_probs=108.3
Q ss_pred HhcCCEEEEEeCCCCChhcchhHH-----------HhcCccCCC-ccccCceEEEEcCCchhhhccHHHHHHHhhccc--
Q 005605 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT-- 143 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~-----------ll~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~-- 143 (688)
+..|+.++|.||+||||||++..+ .+++.++.. +...+.+.++++.+.....+++.++++......
T Consensus 27 i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~ 106 (353)
T TIGR03265 27 VKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGM 106 (353)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCC
Confidence 568999999999999999998743 233322221 112356788888887777889999987543210
Q ss_pred -----------ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHH
Q 005605 144 -----------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (688)
Q Consensus 144 -----------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i 210 (688)
+...+|.. ...+..+..+|+|+.+|+.++++++.++++++||| +++|......+...++++
T Consensus 107 ~~~~~~~~~~~~l~~l~L~------~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l 180 (353)
T TIGR03265 107 GRAEVAERVAELLDLVGLP------GSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQL 180 (353)
T ss_pred CHHHHHHHHHHHHHHcCCC------chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 11111211 12356778899999999999999999999999999 667777777888888888
Q ss_pred HhcCCCcEEEEeccccc-HHHHHch
Q 005605 211 LKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 211 ~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
.+.. +..+|+.||..+ +..+++.
T Consensus 181 ~~~~-~~tvi~vTHd~~ea~~l~d~ 204 (353)
T TIGR03265 181 QRRL-GVTTIMVTHDQEEALSMADR 204 (353)
T ss_pred HHhc-CCEEEEEcCCHHHHHHhCCE
Confidence 6654 789999999985 4556654
No 146
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.18 E-value=4e-11 Score=119.92 Aligned_cols=148 Identities=20% Similarity=0.336 Sum_probs=100.7
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc------cccCceEEEEcCCchhhhccHHHHHHHhh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP------DRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~------~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (688)
+.+|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+......++.+++....
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 105 (216)
T TIGR00960 26 ITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPL 105 (216)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHH
Confidence 5789999999999999999987432 122111110 01234567777776555667877775321
Q ss_pred c---c----------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHH
Q 005605 141 D---V----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (688)
Q Consensus 141 ~---~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ 205 (688)
. . .....+|.. ...+..+..+|+|+.+|+.++++++.+++++++|| ++.|......+..
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 179 (216)
T TIGR00960 106 RIIGVPPRDANERVSAALEKVGLE------GKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMR 179 (216)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCh------hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHH
Confidence 1 0 011111211 12345667899999999999999999999999999 7888888888888
Q ss_pred HHHHHHhcCCCcEEEEeccccc-HHHHHc
Q 005605 206 LLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 206 ~l~~i~~~~~~~~vil~SAT~~-~~~~~~ 233 (688)
+++++.+. +..+|+.||.++ ...+++
T Consensus 180 ~l~~~~~~--~~tii~vsH~~~~~~~~~d 206 (216)
T TIGR00960 180 LFEEFNRR--GTTVLVATHDINLVETYRH 206 (216)
T ss_pred HHHHHHHC--CCEEEEEeCCHHHHHHhCC
Confidence 88887543 678999999885 344444
No 147
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.17 E-value=4.5e-11 Score=128.50 Aligned_cols=156 Identities=22% Similarity=0.283 Sum_probs=108.3
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC-ccccCceEEEEcCCchhhhccHHHHHHHhhccc-c
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT-I 144 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~-~ 144 (688)
+..|+.++|.||+||||||++..+. +++.++.. +...+.+.++++.+.....+++.++++...... .
T Consensus 37 i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~ 116 (375)
T PRK09452 37 INNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKT 116 (375)
T ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCC
Confidence 5689999999999999999987432 33322221 112356788888887777889999987543210 0
Q ss_pred -----cceeceeeeecc-cccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCC
Q 005605 145 -----GEEVGYSIRFED-CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPD 216 (688)
Q Consensus 145 -----~~~vg~~~~~~~-~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~ 216 (688)
...+......-. ....+..+..+|+|+.+|+.++++++.++++++||| +.+|......+...++++.+.. +
T Consensus 117 ~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~-g 195 (375)
T PRK09452 117 PAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKL-G 195 (375)
T ss_pred CHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-C
Confidence 001110000000 122356677899999999999999999999999999 6677777778888888887754 7
Q ss_pred cEEEEeccccc-HHHHHch
Q 005605 217 LKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 217 ~~vil~SAT~~-~~~~~~~ 234 (688)
..+|+.||..+ +..+++.
T Consensus 196 ~tiI~vTHd~~ea~~laDr 214 (375)
T PRK09452 196 ITFVFVTHDQEEALTMSDR 214 (375)
T ss_pred CEEEEEeCCHHHHHHhCCE
Confidence 89999999984 3555554
No 148
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.17 E-value=3.8e-11 Score=111.17 Aligned_cols=149 Identities=18% Similarity=0.361 Sum_probs=108.6
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC-ccccCceEEEEcCCchhhhccHHHHHHHhhc----
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD---- 141 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~---- 141 (688)
+..|+.+.|.||+||||||++.++. +++.+... +...+.+.++++.....+.++|++++.-.+.
T Consensus 22 v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~Lk 101 (231)
T COG3840 22 VPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLK 101 (231)
T ss_pred ecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcccc
Confidence 5689999999999999999987532 33332221 2223455677777777788888888854321
Q ss_pred ---------ccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHH
Q 005605 142 ---------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (688)
Q Consensus 142 ---------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i 210 (688)
..+...||.. ...+..+..+|+|+.+|+.+++.++.+--+++||| +-++......++.++..+
T Consensus 102 L~a~~r~~v~~aa~~vGl~------~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l 175 (231)
T COG3840 102 LNAEQREKVEAAAAQVGLA------GFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQL 175 (231)
T ss_pred cCHHHHHHHHHHHHHhChh------hHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHH
Confidence 1122334432 22345567899999999999999999999999999 556777788899999999
Q ss_pred HhcCCCcEEEEecccc-cHHHHHc
Q 005605 211 LKNRPDLKLVVMSATL-EAEKFQG 233 (688)
Q Consensus 211 ~~~~~~~~vil~SAT~-~~~~~~~ 233 (688)
..++ +.+++++||.. ++..+++
T Consensus 176 ~~E~-~~TllmVTH~~~Da~~ia~ 198 (231)
T COG3840 176 CDER-KMTLLMVTHHPEDAARIAD 198 (231)
T ss_pred HHhh-CCEEEEEeCCHHHHHHhhh
Confidence 8887 88999999998 4555554
No 149
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.17 E-value=5.9e-11 Score=118.90 Aligned_cols=154 Identities=21% Similarity=0.291 Sum_probs=99.7
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCcc-------ccCceEEEEcCCchhhhccHHHHHHHh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD-------RRRKMMIACTQPRRVAAMSVSRRVAEE 139 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~-------~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (688)
+..|+.++|+|+|||||||++..+. +++.++.... ..+.+.++++.+......++.+++...
T Consensus 27 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 106 (218)
T cd03255 27 IEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELP 106 (218)
T ss_pred EcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHH
Confidence 5689999999999999999987432 2221111100 113466777776655556777776532
Q ss_pred hccc-c-----cceec-eeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHH
Q 005605 140 MDVT-I-----GEEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (688)
Q Consensus 140 ~~~~-~-----~~~vg-~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i 210 (688)
.... . ...+. +...++-....+..+..+|+|+.+++.++++++.+++++|||| ++.|....+.+..+++++
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~ 186 (218)
T cd03255 107 LLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLREL 186 (218)
T ss_pred HhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 1100 0 00000 0000000111245667899999999999999999999999999 677778888888999888
Q ss_pred HhcCCCcEEEEecccccHHHHH
Q 005605 211 LKNRPDLKLVVMSATLEAEKFQ 232 (688)
Q Consensus 211 ~~~~~~~~vil~SAT~~~~~~~ 232 (688)
.+.. +..+|+.||.++...++
T Consensus 187 ~~~~-~~tii~~sH~~~~~~~~ 207 (218)
T cd03255 187 NKEA-GTTIVVVTHDPELAEYA 207 (218)
T ss_pred HHhc-CCeEEEEECCHHHHhhh
Confidence 6533 67899999998542244
No 150
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.17 E-value=5.9e-11 Score=127.85 Aligned_cols=150 Identities=22% Similarity=0.307 Sum_probs=108.5
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC-ccccCceEEEEcCCchhhhccHHHHHHHhhccc--
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT-- 143 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~-- 143 (688)
+..|+.++|.||+||||||++..+. +++.++.. +...+.+.++++++.....+++.++++......
T Consensus 42 i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~ 121 (377)
T PRK11607 42 IYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKL 121 (377)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCC
Confidence 5689999999999999999987432 22222211 112346788998888888889999987543210
Q ss_pred -----------ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHH
Q 005605 144 -----------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (688)
Q Consensus 144 -----------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i 210 (688)
+...+|.. ...+..+..+|+|+.+|+.++++++.++++++||| +++|......+...++++
T Consensus 122 ~~~~~~~~v~~~l~~l~L~------~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 195 (377)
T PRK11607 122 PKAEIASRVNEMLGLVHMQ------EFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDI 195 (377)
T ss_pred CHHHHHHHHHHHHHHcCCc------hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 11111211 12356677899999999999999999999999999 677777777788888887
Q ss_pred HhcCCCcEEEEeccccc-HHHHHch
Q 005605 211 LKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 211 ~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
.+.. +..+|+.||..+ +..+++.
T Consensus 196 ~~~~-g~tii~vTHd~~ea~~laDr 219 (377)
T PRK11607 196 LERV-GVTCVMVTHDQEEAMTMAGR 219 (377)
T ss_pred HHhc-CCEEEEEcCCHHHHHHhCCE
Confidence 7654 689999999985 4566654
No 151
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.16 E-value=4.9e-11 Score=118.26 Aligned_cols=148 Identities=21% Similarity=0.277 Sum_probs=98.7
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCccccCceEEEEcCCc-hhhhccHHHHHHHhhcc---
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPDRRRKMMIACTQPR-RVAAMSVSRRVAEEMDV--- 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~~~--- 142 (688)
+..|+.++|+|+|||||||++..+. +++.++......+.+.++++.+. .....++.+++......
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~ 102 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDA 102 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcCc
Confidence 5689999999999999999987432 11111111011234566676653 23345777776532110
Q ss_pred ------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcC
Q 005605 143 ------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNR 214 (688)
Q Consensus 143 ------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~ 214 (688)
.....+|.. ...+..+..+|+|+.+++.++++++.+++++++|| ++.|......+.++++.+.+.
T Consensus 103 ~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~- 175 (205)
T cd03226 103 GNEQAETVLKDLDLY------ALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQ- 175 (205)
T ss_pred cHHHHHHHHHHcCCc------hhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHC-
Confidence 001111211 12345677899999999999999999999999999 778888888888998887643
Q ss_pred CCcEEEEeccccc-HHHHHc
Q 005605 215 PDLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 215 ~~~~vil~SAT~~-~~~~~~ 233 (688)
+..+|+.||.++ ...+++
T Consensus 176 -~~tii~~sH~~~~~~~~~d 194 (205)
T cd03226 176 -GKAVIVITHDYEFLAKVCD 194 (205)
T ss_pred -CCEEEEEeCCHHHHHHhCC
Confidence 678999999885 344554
No 152
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.16 E-value=5.3e-11 Score=125.20 Aligned_cols=156 Identities=19% Similarity=0.244 Sum_probs=106.5
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC--ccccCceEEEEcCCchhhhccHHHHHHHh---hc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEE---MD 141 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~---~~ 141 (688)
+..|+++++.|||||||||++..+. +++.+... ....+.+.++++.+.....+++.+++... .+
T Consensus 30 i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~ 109 (306)
T PRK13537 30 VQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG 109 (306)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC
Confidence 5689999999999999999987543 12221111 11124577888877666667888777531 11
Q ss_pred cccc---cee-ceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCC
Q 005605 142 VTIG---EEV-GYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRP 215 (688)
Q Consensus 142 ~~~~---~~v-g~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~ 215 (688)
.... ..+ .....++-....++.+..+|.|+.+++.++.+++.+++++|||| +++|......+.++++++.+.
T Consensus 110 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~-- 187 (306)
T PRK13537 110 LSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLAR-- 187 (306)
T ss_pred CCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC--
Confidence 1000 000 00001111122356678899999999999999999999999999 788888888899999988543
Q ss_pred CcEEEEeccccc-HHHHHchh
Q 005605 216 DLKLVVMSATLE-AEKFQGYF 235 (688)
Q Consensus 216 ~~~vil~SAT~~-~~~~~~~~ 235 (688)
+..+|+.||.++ ++.++++.
T Consensus 188 g~till~sH~l~e~~~~~d~i 208 (306)
T PRK13537 188 GKTILLTTHFMEEAERLCDRL 208 (306)
T ss_pred CCEEEEECCCHHHHHHhCCEE
Confidence 678999999995 56777653
No 153
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.16 E-value=6e-11 Score=120.28 Aligned_cols=150 Identities=23% Similarity=0.324 Sum_probs=101.5
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc------cccCceEEEEcCCchhhhccHHHHHHHhh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP------DRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~------~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (688)
+.+|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+......++.+++....
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~ 102 (235)
T cd03261 23 VRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPL 102 (235)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHH
Confidence 6789999999999999999987433 222111110 01234567777766555567877775321
Q ss_pred cc----c----------ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHH
Q 005605 141 DV----T----------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (688)
Q Consensus 141 ~~----~----------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll 204 (688)
.. . +...+|. ....+..+..+|+|+.+++.++++++.+++++|+|| ++.|......+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~l------~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~ 176 (235)
T cd03261 103 REHTRLSEEEIREIVLEKLEAVGL------RGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVID 176 (235)
T ss_pred hhccCCCHHHHHHHHHHHHHHcCC------chhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHH
Confidence 10 0 0111111 011345667899999999999999999999999999 777778888888
Q ss_pred HHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 205 GLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 205 ~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
.+++++.+.. +..+|+.||.++ ...+++.
T Consensus 177 ~~l~~~~~~~-~~tvi~vsH~~~~~~~~~d~ 206 (235)
T cd03261 177 DLIRSLKKEL-GLTSIMVTHDLDTAFAIADR 206 (235)
T ss_pred HHHHHHHHhc-CcEEEEEecCHHHHHHhcCE
Confidence 8888876543 578999999985 3445543
No 154
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.16 E-value=6.7e-11 Score=118.03 Aligned_cols=149 Identities=21% Similarity=0.303 Sum_probs=99.7
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC-ccccCceEEEEcCCchhhhccHHHHHHHhhcc---
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (688)
+.+|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++.+......++.+++......
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~ 102 (213)
T cd03259 23 VEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGV 102 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCC
Confidence 6789999999999999999987432 11111111 00123456677766555556777776432110
Q ss_pred ----------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHH
Q 005605 143 ----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (688)
Q Consensus 143 ----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i 210 (688)
.....+|. ....+..+..+|+|+.+++.++++++.+++++|+|| +++|......+.++++++
T Consensus 103 ~~~~~~~~~~~~l~~~~l------~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~ 176 (213)
T cd03259 103 PKAEIRARVRELLELVGL------EGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKEL 176 (213)
T ss_pred CHHHHHHHHHHHHHHcCC------hhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 00111111 111245567899999999999999999999999999 778888888888888887
Q ss_pred HhcCCCcEEEEeccccc-HHHHHc
Q 005605 211 LKNRPDLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 211 ~~~~~~~~vil~SAT~~-~~~~~~ 233 (688)
.+.. +..+|+.||.++ ...+++
T Consensus 177 ~~~~-~~tii~~sH~~~~~~~~~d 199 (213)
T cd03259 177 QREL-GITTIYVTHDQEEALALAD 199 (213)
T ss_pred HHHc-CCEEEEEecCHHHHHHhcC
Confidence 6543 678999999885 345554
No 155
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.15 E-value=8e-11 Score=118.10 Aligned_cols=147 Identities=20% Similarity=0.271 Sum_probs=100.3
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHh-----------cCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhcc----
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVL-----------EGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV---- 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll-----------~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~---- 142 (688)
+.+|+.++|+|+|||||||++..+.= ++.++. ...+.+.++++.+......++.+++......
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 104 (220)
T cd03293 27 VEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVT--GPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVP 104 (220)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECc--cccCcEEEEecccccccCCCHHHHHHHHHHHcCCC
Confidence 56899999999999999999875431 111110 0123456677776555556777776432110
Q ss_pred ---------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHH
Q 005605 143 ---------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVL 211 (688)
Q Consensus 143 ---------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~ 211 (688)
.....+|.. ...+..+..+|+|+.+++.++++++.+++++|+|| ++.|......+.++++++.
T Consensus 105 ~~~~~~~~~~~l~~~~l~------~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~ 178 (220)
T cd03293 105 KAEARERAEELLELVGLS------GFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIW 178 (220)
T ss_pred HHHHHHHHHHHHHHcCCh------hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHH
Confidence 001111111 11245567899999999999999999999999999 7788888888999998876
Q ss_pred hcCCCcEEEEeccccc-HHHHHc
Q 005605 212 KNRPDLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 212 ~~~~~~~vil~SAT~~-~~~~~~ 233 (688)
+.. +..+|+.||.++ ...+++
T Consensus 179 ~~~-~~tiii~sH~~~~~~~~~d 200 (220)
T cd03293 179 RET-GKTVLLVTHDIDEAVFLAD 200 (220)
T ss_pred HHc-CCEEEEEecCHHHHHHhCC
Confidence 543 578999999885 445554
No 156
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.15 E-value=7.9e-11 Score=117.32 Aligned_cols=157 Identities=18% Similarity=0.304 Sum_probs=102.3
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC-ccccCceEEEEcCCchhhhccHHHHHHHhhcccc
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTI 144 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~ 144 (688)
.+.+|+.++|.|+|||||||++..+. +++.++.. ....+.+.++++.+......++.+++........
T Consensus 20 ~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~ 99 (211)
T cd03298 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL 99 (211)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccccccc
Confidence 36799999999999999999987432 11211111 0012346677777765555678777753211000
Q ss_pred c------ceeceeeeeccc-ccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCC
Q 005605 145 G------EEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRP 215 (688)
Q Consensus 145 ~------~~vg~~~~~~~~-~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~ 215 (688)
. ..+......-.. ...+..+..+|+|+.+++.++++++.+++++|+|| ++.|....+.+..+++++.+..
T Consensus 100 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~- 178 (211)
T cd03298 100 KLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAET- 178 (211)
T ss_pred CccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-
Confidence 0 000000000001 11345667899999999999999999999999999 7777788888888888876543
Q ss_pred CcEEEEeccccc-HHHHHch
Q 005605 216 DLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 216 ~~~vil~SAT~~-~~~~~~~ 234 (688)
+..+|+.||.++ ...++++
T Consensus 179 ~~tii~~sH~~~~~~~~~d~ 198 (211)
T cd03298 179 KMTVLMVTHQPEDAKRLAQR 198 (211)
T ss_pred CCEEEEEecCHHHHHhhhCE
Confidence 678999999885 3455543
No 157
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.15 E-value=3.8e-11 Score=120.28 Aligned_cols=157 Identities=22% Similarity=0.266 Sum_probs=105.5
Q ss_pred HHhcCCEEEEEeCCCCChhcchhH-----------HHhcCc---cCCC-ccccCceEEEEcCCchhhhccHHHHHHHhhc
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGV---DIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~-----------~ll~~~---~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (688)
.|.+|+.+++.||+||||||++.. +.+++. +..+ ....++++++++..-....++|+++++..+.
T Consensus 24 ~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~ 103 (345)
T COG1118 24 DIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLK 103 (345)
T ss_pred eecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhccc
Confidence 456999999999999999999873 233333 2221 1223567888988888889999999987653
Q ss_pred ccc--------cceeceeeeeccc-ccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHH
Q 005605 142 VTI--------GEEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (688)
Q Consensus 142 ~~~--------~~~vg~~~~~~~~-~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i 210 (688)
..- ...+.-..+.-+. ...+..+..+|+|+.+|+++++++..+|++|+||| ...|.-....+...|+++
T Consensus 104 ~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~ 183 (345)
T COG1118 104 VRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKL 183 (345)
T ss_pred ccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHH
Confidence 320 0011100000111 12356778899999999999999999999999999 223333333455555565
Q ss_pred HhcCCCcEEEEecccc-cHHHHHch
Q 005605 211 LKNRPDLKLVVMSATL-EAEKFQGY 234 (688)
Q Consensus 211 ~~~~~~~~vil~SAT~-~~~~~~~~ 234 (688)
.... +..++++||+. ++..+++.
T Consensus 184 ~~~~-~~ttvfVTHD~eea~~ladr 207 (345)
T COG1118 184 HDRL-GVTTVFVTHDQEEALELADR 207 (345)
T ss_pred HHhh-CceEEEEeCCHHHHHhhcce
Confidence 5544 78999999998 45566654
No 158
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.15 E-value=7.3e-11 Score=127.17 Aligned_cols=150 Identities=15% Similarity=0.206 Sum_probs=105.6
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC-ccccCceEEEEcCCchhhhccHHHHHHHhhcc---
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (688)
+..|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++.+.....+++.+++......
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~ 105 (369)
T PRK11000 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGA 105 (369)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCC
Confidence 5689999999999999999987433 22211111 11124567788877766677888888643211
Q ss_pred ----------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHH
Q 005605 143 ----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (688)
Q Consensus 143 ----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i 210 (688)
.+...+|.. ...+..+..+|+|+.+|+.++++++.++++++||| +++|......+...++++
T Consensus 106 ~~~~~~~~~~~~l~~lgL~------~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l 179 (369)
T PRK11000 106 KKEEINQRVNQVAEVLQLA------HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRL 179 (369)
T ss_pred CHHHHHHHHHHHHHHcCCh------hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 011111211 12355677899999999999999999999999999 777778888888888888
Q ss_pred HhcCCCcEEEEeccccc-HHHHHch
Q 005605 211 LKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 211 ~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
.+.. +..+|+.||.++ +..+++.
T Consensus 180 ~~~~-g~tvI~vTHd~~~~~~~~d~ 203 (369)
T PRK11000 180 HKRL-GRTMIYVTHDQVEAMTLADK 203 (369)
T ss_pred HHHh-CCEEEEEeCCHHHHHHhCCE
Confidence 7654 678999999985 4455554
No 159
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.15 E-value=8.1e-11 Score=125.85 Aligned_cols=156 Identities=22% Similarity=0.255 Sum_probs=107.3
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC-ccccCceEEEEcCCchhhhccHHHHHHHhhcc---
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (688)
+.+|+.++|.||+||||||++..+. +++.++.. ....+.+.++++.+.....+++.++++.....
T Consensus 25 i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~ 104 (353)
T PRK10851 25 IPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPR 104 (353)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhccc
Confidence 5689999999999999999987432 33322211 11124677888887777778898888654221
Q ss_pred ----c---ccceec-eeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHh
Q 005605 143 ----T---IGEEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLK 212 (688)
Q Consensus 143 ----~---~~~~vg-~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~ 212 (688)
. ....+. ....+.-....+..+..+|+|+.+|+.++++++.+++++++|| +++|......+...++++.+
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~ 184 (353)
T PRK10851 105 RERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHE 184 (353)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 0 000000 0000000122356778899999999999999999999999999 67777788888888888876
Q ss_pred cCCCcEEEEeccccc-HHHHHch
Q 005605 213 NRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 213 ~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
.. +..+|+.||.++ +..+++.
T Consensus 185 ~~-g~tii~vTHd~~ea~~~~Dr 206 (353)
T PRK10851 185 EL-KFTSVFVTHDQEEAMEVADR 206 (353)
T ss_pred hc-CCEEEEEeCCHHHHHHhCCE
Confidence 54 678999999984 4556654
No 160
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.14 E-value=1.3e-10 Score=112.03 Aligned_cols=59 Identities=29% Similarity=0.424 Sum_probs=52.2
Q ss_pred cCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEeccccc
Q 005605 167 LTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (688)
Q Consensus 167 lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~ 227 (688)
+|+|+.+++.++++++.+++++++|| ++.|....+.+.++++++.++ +..+|+.||..+
T Consensus 96 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~--g~tiii~th~~~ 156 (173)
T cd03230 96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE--GKTILLSSHILE 156 (173)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC--CCEEEEECCCHH
Confidence 89999999999999999999999999 777778888888998887654 578999999874
No 161
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.14 E-value=8e-11 Score=119.85 Aligned_cols=156 Identities=20% Similarity=0.272 Sum_probs=100.4
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc------cccCceEEEEcCCchhhhccHHHHHHHhh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP------DRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~------~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (688)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+......++.+++....
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 103 (241)
T cd03256 24 INPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGR 103 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhh
Confidence 5689999999999999999987432 222111110 01234566776665555567777764321
Q ss_pred ccc--------------ccceec-eeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHH
Q 005605 141 DVT--------------IGEEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (688)
Q Consensus 141 ~~~--------------~~~~vg-~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~l 203 (688)
... ....+. +...+.-....+..+..+|+|+.+++.++++++.+++++|+|| +++|......+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l 183 (241)
T cd03256 104 LGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQV 183 (241)
T ss_pred cccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHH
Confidence 000 000000 0000000112345667899999999999999999999999999 77778888888
Q ss_pred HHHHHHHHhcCCCcEEEEecccccH-HHHHch
Q 005605 204 FGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (688)
Q Consensus 204 l~~l~~i~~~~~~~~vil~SAT~~~-~~~~~~ 234 (688)
..+++.+.+.. +..+|+.||.++. ..++++
T Consensus 184 ~~~l~~~~~~~-~~tii~~tH~~~~~~~~~d~ 214 (241)
T cd03256 184 MDLLKRINREE-GITVIVSLHQVDLAREYADR 214 (241)
T ss_pred HHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCE
Confidence 88888876543 6789999999853 335543
No 162
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.14 E-value=8.6e-11 Score=117.35 Aligned_cols=149 Identities=20% Similarity=0.319 Sum_probs=99.9
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc------cccCceEEEEcCCchhhhccHHHHHHHhh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP------DRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~------~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (688)
+.+|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+......++.+++....
T Consensus 25 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 104 (214)
T TIGR02673 25 IRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPL 104 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHH
Confidence 6789999999999999999987432 111111110 01234566777665555567777764321
Q ss_pred c---c----------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHH
Q 005605 141 D---V----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (688)
Q Consensus 141 ~---~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ 205 (688)
. . .....+|.. ...+..+..+|+|+.+++.++++++.+++++|+|| ++.|......+..
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~ 178 (214)
T TIGR02673 105 EVRGKKEREIQRRVGAALRQVGLE------HKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILD 178 (214)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCh------hhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHH
Confidence 1 0 001111110 11245567899999999999999999999999999 7788888888999
Q ss_pred HHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 206 LLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 206 ~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
+++++.+. +..+|+.||.++ ...++++
T Consensus 179 ~l~~~~~~--~~tii~~tH~~~~~~~~~d~ 206 (214)
T TIGR02673 179 LLKRLNKR--GTTVIVATHDLSLVDRVAHR 206 (214)
T ss_pred HHHHHHHc--CCEEEEEeCCHHHHHHhcCE
Confidence 99887543 678999999874 3445543
No 163
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.13 E-value=9.7e-11 Score=124.63 Aligned_cols=156 Identities=17% Similarity=0.224 Sum_probs=106.5
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC--ccccCceEEEEcCCchhhhccHHHHHHHh---hc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEE---MD 141 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~---~~ 141 (688)
+..|+.++++|||||||||++..+. +++.+... ....+.+.++++.+.....+++.+++... .+
T Consensus 64 i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~ 143 (340)
T PRK13536 64 VASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG 143 (340)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC
Confidence 6789999999999999999987433 22221111 11134567788777666667777776431 11
Q ss_pred ccc---ccee-ceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCC
Q 005605 142 VTI---GEEV-GYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRP 215 (688)
Q Consensus 142 ~~~---~~~v-g~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~ 215 (688)
... ...+ .+...++-....++.+..+|+|+.+++.++.+++.+++++|||| +++|......+.++++++.+.
T Consensus 144 ~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~-- 221 (340)
T PRK13536 144 MSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR-- 221 (340)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC--
Confidence 100 0000 00001111122456778899999999999999999999999999 788888898999999998653
Q ss_pred CcEEEEeccccc-HHHHHchh
Q 005605 216 DLKLVVMSATLE-AEKFQGYF 235 (688)
Q Consensus 216 ~~~vil~SAT~~-~~~~~~~~ 235 (688)
+..+|+.||.++ ++.++++.
T Consensus 222 g~tilisSH~l~e~~~~~d~i 242 (340)
T PRK13536 222 GKTILLTTHFMEEAERLCDRL 242 (340)
T ss_pred CCEEEEECCCHHHHHHhCCEE
Confidence 779999999995 56677653
No 164
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.13 E-value=1.1e-09 Score=124.56 Aligned_cols=302 Identities=15% Similarity=0.191 Sum_probs=163.3
Q ss_pred CCChHHHHHHHHHHhcC----CEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhh
Q 005605 65 LPVWQQKEEFLQVLKAN----QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (688)
Q Consensus 65 lp~~~~q~~ii~~i~~g----~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (688)
+.....|+.+.+.+.+. ...++.|-||||||-.+.+.+-+-... +.+.++++|-..+- -++.+++....
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~----GkqvLvLVPEI~Lt---pq~~~rf~~rF 269 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ----GKQVLVLVPEIALT---PQLLARFKARF 269 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc----CCEEEEEeccccch---HHHHHHHHHHh
Confidence 45566788888777665 678889999999999888665443211 12345555544333 34445555555
Q ss_pred cccccceeceeeeecccccccccccccCHHHHHHHHhc-------------ccc---ccCCcEEeecccCcChhhHHH--
Q 005605 141 DVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMT-------------DPL---LERYKVIVLDEAHERTLATDV-- 202 (688)
Q Consensus 141 ~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~-------------~~l---l~~~~~lIlDEaher~~~~d~-- 202 (688)
+.++...-. -+|+++..+.... .++ +.+..+||+||=|+.+.-.+.
T Consensus 270 g~~v~vlHS----------------~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~Pf~~LGLIIvDEEHD~sYKq~~~p 333 (730)
T COG1198 270 GAKVAVLHS----------------GLSPGERYRVWRRARRGEARVVIGTRSALFLPFKNLGLIIVDEEHDSSYKQEDGP 333 (730)
T ss_pred CCChhhhcc----------------cCChHHHHHHHHHHhcCCceEEEEechhhcCchhhccEEEEeccccccccCCcCC
Confidence 433321110 1344444332211 112 789999999998865544433
Q ss_pred --HHHHHHHHHhcCCCcEEEEecccccHHHHHchhcC-CCeeeeCCccc---ccceeecCCCc----hh--HHHHHHHHH
Q 005605 203 --LFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYG-APLMKVPGRLH---PVEIFYTQEPE----RD--YLEAAIRTV 270 (688)
Q Consensus 203 --ll~~l~~i~~~~~~~~vil~SAT~~~~~~~~~~~~-~p~~~v~g~~~---~v~~~~~~~~~----~~--~~~~~~~~l 270 (688)
-..-+..+..+.-+..+||-|||...|.+..-..+ ...+....|.. +-++..++... .+ ....+++.+
T Consensus 334 rYhARdvA~~Ra~~~~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i 413 (730)
T COG1198 334 RYHARDVAVLRAKKENAPVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAI 413 (730)
T ss_pred CcCHHHHHHHHHHHhCCCEEEecCCCCHHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHH
Confidence 01111112222237899999999988877654332 12222222211 11222211110 00 001112111
Q ss_pred HHHHhc-------------------------------------------------C----------C-CCC-EEEecCcH
Q 005605 271 VQIHMC-------------------------------------------------E----------P-SGD-ILVFLTGE 289 (688)
Q Consensus 271 ~~i~~~-------------------------------------------------~----------~-~g~-iLVFl~~~ 289 (688)
.+-... . . .+. +..|-+|-
T Consensus 414 ~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gt 493 (730)
T COG1198 414 RKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGT 493 (730)
T ss_pred HHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccH
Confidence 111100 0 0 112 33333443
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHH--hhcccCCCCCCCCCCCCCceEEEEecCccccCcccCCeEEE
Q 005605 290 EEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAM--QQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYV 367 (688)
Q Consensus 290 ~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~--r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~V 367 (688)
+ ++.+.|... .|+..++.+-++..... -+..+..|.+| ...|||-|.+.+-|.++|+|+.|
T Consensus 494 e---rieeeL~~~-------FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~g-------e~dILiGTQmiaKG~~fp~vtLV 556 (730)
T COG1198 494 E---RIEEELKRL-------FPGARIIRIDSDTTRRKGALEDLLDQFANG-------EADILIGTQMIAKGHDFPNVTLV 556 (730)
T ss_pred H---HHHHHHHHH-------CCCCcEEEEccccccchhhHHHHHHHHhCC-------CCCeeecchhhhcCCCcccceEE
Confidence 3 344455444 26778888888766433 34567888888 88999999999999999999865
Q ss_pred --EcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEE
Q 005605 368 --IDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFR 414 (688)
Q Consensus 368 --Id~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~ 414 (688)
+|.|- --+.|..+.. --.-.-+.|=+|||||. .+|.++-
T Consensus 557 gvl~aD~---~L~~~DfRA~-----Er~fqll~QvaGRAgR~~~~G~VvI 598 (730)
T COG1198 557 GVLDADT---GLGSPDFRAS-----ERTFQLLMQVAGRAGRAGKPGEVVI 598 (730)
T ss_pred EEEechh---hhcCCCcchH-----HHHHHHHHHHHhhhccCCCCCeEEE
Confidence 44332 0122222111 12334578999999999 8888763
No 165
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.13 E-value=1.1e-10 Score=124.72 Aligned_cols=150 Identities=23% Similarity=0.343 Sum_probs=104.2
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc------cccCceEEEEcCCchhhhccHHHHHHHhh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP------DRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~------~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (688)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++++......++.+++....
T Consensus 28 i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~ 107 (343)
T PRK11153 28 IPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPL 107 (343)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHH
Confidence 5689999999999999999987432 222211110 01235677888776655678888775432
Q ss_pred c---c----------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHH
Q 005605 141 D---V----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (688)
Q Consensus 141 ~---~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ 205 (688)
. . .+...+|.. ...+..+..+|+|+.+++.++++++.+++++++|| +++|......+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~l~~~gL~------~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~ 181 (343)
T PRK11153 108 ELAGTPKAEIKARVTELLELVGLS------DKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE 181 (343)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCc------hhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 1 0 011111211 12345667899999999999999999999999999 7788888888999
Q ss_pred HHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 206 LLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 206 ~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
+++++.+.. +..+|+.||.++ +..+++.
T Consensus 182 ~L~~l~~~~-g~tiilvtH~~~~i~~~~d~ 210 (343)
T PRK11153 182 LLKDINREL-GLTIVLITHEMDVVKRICDR 210 (343)
T ss_pred HHHHHHHhc-CCEEEEEeCCHHHHHHhCCE
Confidence 999886643 678999999985 3455543
No 166
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.13 E-value=7.9e-11 Score=123.88 Aligned_cols=149 Identities=17% Similarity=0.268 Sum_probs=103.3
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc--cccCceEEEEcCCchhhhccHHHHHHHhh---c
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP--DRRRKMMIACTQPRRVAAMSVSRRVAEEM---D 141 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~--~~~~~~~i~~t~p~~~~~~~v~~~v~~~~---~ 141 (688)
+.+|+.++++|||||||||++..+. +++.++... ...+.+.++++.+.....+++.+++.... +
T Consensus 16 i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 95 (302)
T TIGR01188 16 VREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYG 95 (302)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcC
Confidence 5789999999999999999987432 122111110 11224567777766666678877764321 1
Q ss_pred cc----------ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHH
Q 005605 142 VT----------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (688)
Q Consensus 142 ~~----------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~ 209 (688)
.. +...+|.. ...+..+..+|+|+.+++.++.+++.+++++|||| +++|......+..+++.
T Consensus 96 ~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 169 (302)
T TIGR01188 96 LPKDEAEERAEELLELFELG------EAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRA 169 (302)
T ss_pred CCHHHHHHHHHHHHHHcCCh------hHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 10 11111211 12356677899999999999999999999999999 78888888889999988
Q ss_pred HHhcCCCcEEEEeccccc-HHHHHch
Q 005605 210 VLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 210 i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
+.+. +..+|+.||.++ ++.+++.
T Consensus 170 ~~~~--g~tvi~~sH~~~~~~~~~d~ 193 (302)
T TIGR01188 170 LKEE--GVTILLTTHYMEEADKLCDR 193 (302)
T ss_pred HHhC--CCEEEEECCCHHHHHHhCCE
Confidence 7643 678999999984 4566654
No 167
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.12 E-value=1.1e-10 Score=126.10 Aligned_cols=150 Identities=22% Similarity=0.344 Sum_probs=104.7
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCcc-------ccCceEEEEcCCchhhhccHHHHHHHh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD-------RRRKMMIACTQPRRVAAMSVSRRVAEE 139 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~-------~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (688)
+..|+.++|+|+|||||||++..+. +++.++.... ..+.+.++++++......++.+++...
T Consensus 51 i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~ 130 (400)
T PRK10070 51 IEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFG 130 (400)
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHH
Confidence 6789999999999999999987432 2222221100 013567888877666667888887642
Q ss_pred hc---c----------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHH
Q 005605 140 MD---V----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (688)
Q Consensus 140 ~~---~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll 204 (688)
.. . .+...+|.. ...+..+..+|+|+.+++.++++++.++++++||| +++|......+.
T Consensus 131 ~~~~~~~~~~~~~~~~e~L~~~gL~------~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~ 204 (400)
T PRK10070 131 MELAGINAEERREKALDALRQVGLE------NYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQ 204 (400)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCC------hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHH
Confidence 21 0 011112211 12355677899999999999999999999999999 778888888888
Q ss_pred HHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 205 GLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 205 ~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
.+++++.+.. +..+|+.||.++ +..+++.
T Consensus 205 ~~L~~l~~~~-g~TIIivTHd~~~~~~~~Dr 234 (400)
T PRK10070 205 DELVKLQAKH-QRTIVFISHDLDEAMRIGDR 234 (400)
T ss_pred HHHHHHHHHC-CCeEEEEECCHHHHHHhCCE
Confidence 8888876543 678999999985 3445543
No 168
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.12 E-value=1e-10 Score=119.24 Aligned_cols=149 Identities=21% Similarity=0.320 Sum_probs=99.2
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc------cccCceEEEEcCCchhhhccHHHHHHHhh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP------DRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~------~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (688)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+......++.+++....
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~ 104 (243)
T TIGR02315 25 INPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGR 104 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcc
Confidence 5789999999999999999987432 112111110 01234566776665555567777764311
Q ss_pred cc---------------------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcCh
Q 005605 141 DV---------------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERT 197 (688)
Q Consensus 141 ~~---------------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~ 197 (688)
.. .+...+|. ....+..+..+|+|+.+++.++++++.+++++|+|| ++.|.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l------~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~ 178 (243)
T TIGR02315 105 LGYKPTWRSLLGRFSEEDKERALSALERVGL------ADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDP 178 (243)
T ss_pred cccccchhhhhccccHHHHHHHHHHHHHcCc------HhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 00 00011111 011245667899999999999999999999999999 67777
Q ss_pred hhHHHHHHHHHHHHhcCCCcEEEEecccccH-HHHHc
Q 005605 198 LATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (688)
Q Consensus 198 ~~~d~ll~~l~~i~~~~~~~~vil~SAT~~~-~~~~~ 233 (688)
.....+..+++++.+.. +..+|+.||.++. ..+++
T Consensus 179 ~~~~~l~~~l~~~~~~~-~~tiii~tH~~~~~~~~~d 214 (243)
T TIGR02315 179 KTSKQVMDYLKRINKED-GITVIINLHQVDLAKKYAD 214 (243)
T ss_pred HHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcC
Confidence 78888888888876543 5689999998853 34444
No 169
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.12 E-value=1.2e-10 Score=113.55 Aligned_cols=156 Identities=20% Similarity=0.258 Sum_probs=109.2
Q ss_pred HhcCCEEEEEeCCCCChhcchh-----------HHHhcCccCCCcc----ccCceEEEEcCCchhhhccHHHHHHHhhcc
Q 005605 78 LKANQVIILVGETGSGKTTQIP-----------QFVLEGVDIETPD----RRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~-----------~~ll~~~~~~~~~----~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (688)
+..|+++.++||||+||||+|. .+++++.++.... ...++.-.++.++....+++.+++.-....
T Consensus 27 v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~ 106 (250)
T COG0411 27 VRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHA 106 (250)
T ss_pred EcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhh
Confidence 5789999999999999999987 3445555444311 123455567788888899999998654221
Q ss_pred c--ccceeceeee--ec--------------cc-ccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHH
Q 005605 143 T--IGEEVGYSIR--FE--------------DC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (688)
Q Consensus 143 ~--~~~~vg~~~~--~~--------------~~-~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d 201 (688)
. +....++... .+ .. ...+....-++.|++.++.++++++.+|++|+||| |.....+.+
T Consensus 107 ~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~ 186 (250)
T COG0411 107 RLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETE 186 (250)
T ss_pred hhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHH
Confidence 1 1111111000 00 00 11233444689999999999999999999999999 888888888
Q ss_pred HHHHHHHHHHhcCCCcEEEEecccccH-HHHHch
Q 005605 202 VLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (688)
Q Consensus 202 ~ll~~l~~i~~~~~~~~vil~SAT~~~-~~~~~~ 234 (688)
.+.++++++.+.. +..++++-|.|+. -.++++
T Consensus 187 ~l~~~i~~i~~~~-g~tillIEHdM~~Vm~l~dr 219 (250)
T COG0411 187 ELAELIRELRDRG-GVTILLIEHDMKLVMGLADR 219 (250)
T ss_pred HHHHHHHHHHhcC-CcEEEEEEeccHHHhhhccE
Confidence 8999999987654 7899999999964 556655
No 170
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.12 E-value=1.2e-10 Score=124.85 Aligned_cols=150 Identities=20% Similarity=0.271 Sum_probs=104.2
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC-------ccccCceEEEEcCCchhhhccHHHHHHHh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-------PDRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-------~~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (688)
+..|+.++|.||+||||||++..+. +++.++.. ....+.+.++++.+.....+++.+++...
T Consensus 21 i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~ 100 (352)
T PRK11144 21 LPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYG 100 (352)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhh
Confidence 5689999999999999999987432 22221111 01123566777777666667888887532
Q ss_pred hc-------ccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHH
Q 005605 140 MD-------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (688)
Q Consensus 140 ~~-------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i 210 (688)
.. ..+...+|.. ...+..+..+|+|+.+|+.++++++.++++++||| +++|......+...++++
T Consensus 101 ~~~~~~~~~~~~l~~~gl~------~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l 174 (352)
T PRK11144 101 MAKSMVAQFDKIVALLGIE------PLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERL 174 (352)
T ss_pred hhhhhHHHHHHHHHHcCCc------hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 11 0111222221 12355677899999999999999999999999999 677777788888888888
Q ss_pred HhcCCCcEEEEeccccc-HHHHHch
Q 005605 211 LKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 211 ~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
.+.. +..+|+.||.++ ...+++.
T Consensus 175 ~~~~-g~tii~vTHd~~~~~~~~d~ 198 (352)
T PRK11144 175 AREI-NIPILYVSHSLDEILRLADR 198 (352)
T ss_pred HHhc-CCeEEEEecCHHHHHHhCCE
Confidence 7653 678999999984 4555554
No 171
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.11 E-value=1.3e-10 Score=112.49 Aligned_cols=66 Identities=21% Similarity=0.332 Sum_probs=54.8
Q ss_pred cCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEecccccH-HHHHc
Q 005605 167 LTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (688)
Q Consensus 167 lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~~-~~~~~ 233 (688)
+|+|+.+++.++++++.+++++|+|| ++.|....+.+..+++.+.+.. +..+|+.||..+. +.+++
T Consensus 101 lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d 169 (178)
T cd03229 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQL-GITVVLVTHDLDEAARLAD 169 (178)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcC
Confidence 99999999999999999999999999 7777788888888888876642 5688999998743 33443
No 172
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.11 E-value=1.5e-10 Score=115.52 Aligned_cols=154 Identities=19% Similarity=0.189 Sum_probs=97.6
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhc---cc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMD---VT 143 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~---~~ 143 (688)
+..|+.++|+|+|||||||++..+. +++.++......+.+.++++.+......++.+++..... ..
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~ 113 (214)
T PRK13543 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRR 113 (214)
T ss_pred ECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcCCc
Confidence 5789999999999999999987433 111111110111235566655544444577766643211 00
Q ss_pred ccceec-eeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEE
Q 005605 144 IGEEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLV 220 (688)
Q Consensus 144 ~~~~vg-~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vi 220 (688)
....+. +...+.-....+..+..+|+|+.+++.+++.++.+++++++|| .+.|......+..+++.+.+. +..+|
T Consensus 114 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~tii 191 (214)
T PRK13543 114 AKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRG--GGAAL 191 (214)
T ss_pred HHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC--CCEEE
Confidence 000000 0000000111356677899999999999999999999999999 777777888888888887554 57899
Q ss_pred Eeccccc-HHHHHc
Q 005605 221 VMSATLE-AEKFQG 233 (688)
Q Consensus 221 l~SAT~~-~~~~~~ 233 (688)
+.||.++ ...+++
T Consensus 192 i~sH~~~~~~~~~~ 205 (214)
T PRK13543 192 VTTHGAYAAPPVRT 205 (214)
T ss_pred EEecChhhhhhhcc
Confidence 9999884 344443
No 173
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.11 E-value=1.4e-10 Score=117.38 Aligned_cols=156 Identities=20% Similarity=0.283 Sum_probs=101.0
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc------cccCceEEEEcCCchhhhccHHHHHHHhh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP------DRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~------~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (688)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+......++.+++....
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~ 107 (233)
T cd03258 28 VPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPL 107 (233)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHH
Confidence 5789999999999999999987432 222211110 01234667777776655577877765321
Q ss_pred c---ccc---cceec-eeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHH
Q 005605 141 D---VTI---GEEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVL 211 (688)
Q Consensus 141 ~---~~~---~~~vg-~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~ 211 (688)
. ... ...+. +...+.-....+..+..+|+|+.+++.++++++.+++++|||| ++.|......+.++++.+.
T Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~ 187 (233)
T cd03258 108 EIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDIN 187 (233)
T ss_pred HHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHH
Confidence 1 000 00000 0000000111245567799999999999999999999999999 6777778888888888876
Q ss_pred hcCCCcEEEEecccccH-HHHHch
Q 005605 212 KNRPDLKLVVMSATLEA-EKFQGY 234 (688)
Q Consensus 212 ~~~~~~~vil~SAT~~~-~~~~~~ 234 (688)
+.. +..+|+.||.++. ..++++
T Consensus 188 ~~~-~~tvii~sH~~~~~~~~~d~ 210 (233)
T cd03258 188 REL-GLTIVLITHEMEVVKRICDR 210 (233)
T ss_pred HHc-CCEEEEEeCCHHHHHHhCCE
Confidence 543 5789999998753 445543
No 174
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.11 E-value=1.2e-10 Score=125.99 Aligned_cols=155 Identities=19% Similarity=0.219 Sum_probs=103.8
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhcc-
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (688)
+.+|+.++++|||||||||++..+. +++.++.. ....+.+.++++.+.....+++.+++...+..
T Consensus 26 i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~ 105 (402)
T PRK09536 26 VREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPH 105 (402)
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchh
Confidence 5689999999999999999987432 22221111 11123466777776655667887777542210
Q ss_pred --ccc-------ceeceeeee-cccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHH
Q 005605 143 --TIG-------EEVGYSIRF-EDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (688)
Q Consensus 143 --~~~-------~~vg~~~~~-~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i 210 (688)
... ..+...... +-....+..+..+|+|+.+|+.++++++.++++++||| +++|......++.+++++
T Consensus 106 ~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l 185 (402)
T PRK09536 106 RSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRL 185 (402)
T ss_pred cccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 000 000000000 00112345677899999999999999999999999999 788888888899999998
Q ss_pred HhcCCCcEEEEeccccc-HHHHHch
Q 005605 211 LKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 211 ~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
.+. +..+|+.||.++ +..+++.
T Consensus 186 ~~~--g~TIIivsHdl~~~~~~adr 208 (402)
T PRK09536 186 VDD--GKTAVAAIHDLDLAARYCDE 208 (402)
T ss_pred Hhc--CCEEEEEECCHHHHHHhCCE
Confidence 753 678999999985 3466654
No 175
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.11 E-value=1.4e-10 Score=115.48 Aligned_cols=148 Identities=16% Similarity=0.258 Sum_probs=99.0
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHh-----------cCccCCCccccCceEEEEcCCchhhhccHHHHHHHhh---cc-
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVL-----------EGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEM---DV- 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll-----------~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~---~~- 142 (688)
+.+|+.++|+|+|||||||++..+.- ++.++.. ...+.+.++++.+......++.+++.... +.
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 101 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLK 101 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCC
Confidence 57899999999999999999875431 1111110 11234566777765555567777764321 10
Q ss_pred ---------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHH
Q 005605 143 ---------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVL 211 (688)
Q Consensus 143 ---------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~ 211 (688)
.....+|. ....+..+..+|+|+.+++.+++.++.+++++|+|| ++.|....+.+..+++.+.
T Consensus 102 ~~~~~~~~~~~l~~~~l------~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~ 175 (210)
T cd03269 102 KEEARRRIDEWLERLEL------SEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELA 175 (210)
T ss_pred hHHHHHHHHHHHHHcCC------hHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 00011111 011245567799999999999999999999999999 6777777888888888875
Q ss_pred hcCCCcEEEEeccccc-HHHHHch
Q 005605 212 KNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 212 ~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
+. +..+|+.||..+ ...+++.
T Consensus 176 ~~--~~tii~~sH~~~~~~~~~d~ 197 (210)
T cd03269 176 RA--GKTVILSTHQMELVEELCDR 197 (210)
T ss_pred HC--CCEEEEECCCHHHHHHhhhE
Confidence 43 578999999885 3445543
No 176
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.11 E-value=1.7e-10 Score=116.82 Aligned_cols=144 Identities=19% Similarity=0.293 Sum_probs=98.8
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCcc------c-cCceEEEEcCCchhhhccHHHHHHHh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD------R-RRKMMIACTQPRRVAAMSVSRRVAEE 139 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~------~-~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (688)
+..|+.++|+|+|||||||++..+. +++.++.... . .+.+.++++.+......++.+++...
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 111 (233)
T PRK11629 32 IGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMP 111 (233)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHH
Confidence 5789999999999999999987432 2222221100 0 13466777776655556777776432
Q ss_pred hcc-------------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHH
Q 005605 140 MDV-------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (688)
Q Consensus 140 ~~~-------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll 204 (688)
... .+...+|.. ...+..+..+|+|+.+++.++++++.+++++|+|| +++|....+.+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~gl~------~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~ 185 (233)
T PRK11629 112 LLIGKKKPAEINSRALEMLAAVGLE------HRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIF 185 (233)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCc------hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 100 011112211 12345667899999999999999999999999999 778888888888
Q ss_pred HHHHHHHhcCCCcEEEEecccccH
Q 005605 205 GLLKEVLKNRPDLKLVVMSATLEA 228 (688)
Q Consensus 205 ~~l~~i~~~~~~~~vil~SAT~~~ 228 (688)
.+++++.+.. +..+|+.||.++.
T Consensus 186 ~~l~~~~~~~-g~tvii~sH~~~~ 208 (233)
T PRK11629 186 QLLGELNRLQ-GTAFLVVTHDLQL 208 (233)
T ss_pred HHHHHHHHhC-CCEEEEEeCCHHH
Confidence 8888876533 6789999998853
No 177
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.10 E-value=1.5e-10 Score=117.60 Aligned_cols=155 Identities=22% Similarity=0.216 Sum_probs=100.7
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC-ccccCceEEEEcCCchhhhccHHHHHHHhhccc-c
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT-I 144 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~-~ 144 (688)
+.+|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++.|......++.+++....... .
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~ 104 (239)
T cd03296 25 IPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPR 104 (239)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccc
Confidence 5689999999999999999987432 22211111 011234667777766555567777765321100 0
Q ss_pred ---------ccee-ceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHh
Q 005605 145 ---------GEEV-GYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLK 212 (688)
Q Consensus 145 ---------~~~v-g~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~ 212 (688)
...+ .+...+.-....+..+..+|+|+.+++.++++++.+++++|+|| ++.|......+.++++++.+
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 184 (239)
T cd03296 105 SERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHD 184 (239)
T ss_pred cccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 0000 00000000112345667899999999999999999999999999 77777888888888888765
Q ss_pred cCCCcEEEEeccccc-HHHHHc
Q 005605 213 NRPDLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 213 ~~~~~~vil~SAT~~-~~~~~~ 233 (688)
.. +..+|+.||.++ ...+++
T Consensus 185 ~~-~~tvii~sH~~~~~~~~~d 205 (239)
T cd03296 185 EL-HVTTVFVTHDQEEALEVAD 205 (239)
T ss_pred Hc-CCEEEEEeCCHHHHHHhCC
Confidence 43 578999999985 344444
No 178
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.10 E-value=1.7e-10 Score=116.38 Aligned_cols=150 Identities=19% Similarity=0.226 Sum_probs=97.7
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCcc-------ccCceEEEEcCCchhhhccHHHHHHHh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD-------RRRKMMIACTQPRRVAAMSVSRRVAEE 139 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~-------~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (688)
+.+|+.++|+|+|||||||++..+. +++.++.... ..+.+.++++.+......++.+++...
T Consensus 33 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~ 112 (228)
T PRK10584 33 VKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELP 112 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHH
Confidence 5689999999999999999987432 2221111100 012466777776655556777776532
Q ss_pred hccc-c-----cceec-eeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHH
Q 005605 140 MDVT-I-----GEEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (688)
Q Consensus 140 ~~~~-~-----~~~vg-~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i 210 (688)
.... . ...+. +...++-....+..+..+|+|+.+++.++++++.+++++|+|| +++|....+.+..+++++
T Consensus 113 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 192 (228)
T PRK10584 113 ALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSL 192 (228)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 1100 0 00000 0000000111245567899999999999999999999999999 778778888888888887
Q ss_pred HhcCCCcEEEEecccccH
Q 005605 211 LKNRPDLKLVVMSATLEA 228 (688)
Q Consensus 211 ~~~~~~~~vil~SAT~~~ 228 (688)
.+.. +..+|+.||..+.
T Consensus 193 ~~~~-~~tii~~sH~~~~ 209 (228)
T PRK10584 193 NREH-GTTLILVTHDLQL 209 (228)
T ss_pred HHhc-CCEEEEEecCHHH
Confidence 6543 5689999999853
No 179
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.10 E-value=1.6e-10 Score=115.97 Aligned_cols=143 Identities=20% Similarity=0.312 Sum_probs=97.4
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCcc-------ccCceEEEEcCCchhhhccHHHHHHHh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD-------RRRKMMIACTQPRRVAAMSVSRRVAEE 139 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~-------~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (688)
+..|+.++|+|+|||||||++..+. +++.++.... ..+.+.++++.+......++.+++...
T Consensus 28 i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~ 107 (221)
T TIGR02211 28 IGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMP 107 (221)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHH
Confidence 5689999999999999999987432 1221111100 013466777776555556777776432
Q ss_pred hc---c----------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHH
Q 005605 140 MD---V----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (688)
Q Consensus 140 ~~---~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll 204 (688)
.. . .+...+|. ....+..+..+|+|+.+++.+++.++.+++++|+|| +++|......+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~~l------~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~ 181 (221)
T TIGR02211 108 LLIGKKSVKEAKERAYEMLEKVGL------EHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIF 181 (221)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCC------hhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHH
Confidence 10 0 00111111 012345567899999999999999999999999999 778888888888
Q ss_pred HHHHHHHhcCCCcEEEEeccccc
Q 005605 205 GLLKEVLKNRPDLKLVVMSATLE 227 (688)
Q Consensus 205 ~~l~~i~~~~~~~~vil~SAT~~ 227 (688)
.+++.+.+.. +..+|+.||.++
T Consensus 182 ~~l~~~~~~~-~~tii~~tH~~~ 203 (221)
T TIGR02211 182 DLMLELNREL-NTSFLVVTHDLE 203 (221)
T ss_pred HHHHHHHHhc-CCEEEEEeCCHH
Confidence 8888876543 578999999885
No 180
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.10 E-value=3.7e-09 Score=118.57 Aligned_cols=122 Identities=24% Similarity=0.274 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCC
Q 005605 261 DYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKE 340 (688)
Q Consensus 261 ~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~ 340 (688)
.+..+.+..+...|. .+-+|||.+.+.++.+.+++.|.+. ++....|.+.-...+-..+-+.-..|
T Consensus 411 ~k~~Aii~ei~~~~~--~GrPVLVgt~sI~~SE~ls~~L~~~---------gI~h~vLNAk~~~~EA~IIa~AG~~g--- 476 (764)
T PRK12326 411 EKNDAIVEHIAEVHE--TGQPVLVGTHDVAESEELAERLRAA---------GVPAVVLNAKNDAEEARIIAEAGKYG--- 476 (764)
T ss_pred HHHHHHHHHHHHHHH--cCCCEEEEeCCHHHHHHHHHHHHhC---------CCcceeeccCchHhHHHHHHhcCCCC---
Confidence 344556666666664 3558999999999999999999874 56667777764444433333433333
Q ss_pred CCCCceEEEEecCccccCcccC---------------CeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccC
Q 005605 341 GGPPGRKIVVSTNIAETSLTID---------------GIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAG 405 (688)
Q Consensus 341 ~~~~~~kvlvaTniae~gi~i~---------------~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaG 405 (688)
.|.||||.|.||-||. |=-|||-+.. +.|.--=.|=.||||
T Consensus 477 ------aVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTer------------------heSrRID~QLrGRaG 532 (764)
T PRK12326 477 ------AVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGR------------------HRSERLDNQLRGRAG 532 (764)
T ss_pred ------cEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccC------------------CchHHHHHHHhcccc
Confidence 7999999999999986 2247887777 677777779999999
Q ss_pred CC-CCceEEEccchhh
Q 005605 406 RT-QPGKCFRLYTEKS 420 (688)
Q Consensus 406 R~-~~G~~~~l~t~~~ 420 (688)
|. .||.+-.+.|-++
T Consensus 533 RQGDpGss~f~lSleD 548 (764)
T PRK12326 533 RQGDPGSSVFFVSLED 548 (764)
T ss_pred cCCCCCceeEEEEcch
Confidence 99 8999877777554
No 181
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.10 E-value=8.3e-11 Score=110.81 Aligned_cols=157 Identities=19% Similarity=0.247 Sum_probs=96.5
Q ss_pred HHhcCCEEEEEeCCCCChhcchhH-----------HHhcCccCCC--ccccCceEEEEcCCchhhhccHHHHH---HHhh
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRV---AEEM 140 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~-----------~ll~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v---~~~~ 140 (688)
.+.+|+++++.|+||+||||++.- +.+++.+... ...++.+.+++-+--...-+++-+++ +...
T Consensus 24 ~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~ 103 (245)
T COG4555 24 EAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLN 103 (245)
T ss_pred EeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHh
Confidence 467999999999999999998872 2223332222 11234555665332223334444444 2222
Q ss_pred ccccc---cee-ceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcC
Q 005605 141 DVTIG---EEV-GYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNR 214 (688)
Q Consensus 141 ~~~~~---~~v-g~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~ 214 (688)
+..-. ..+ ....+++-....+++.--.|.|+.+++.+++++..+|+++|+|| .++|......+.++++++..
T Consensus 104 ~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~-- 181 (245)
T COG4555 104 GLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN-- 181 (245)
T ss_pred hhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc--
Confidence 11100 000 01111111223456666789999999999999999999999999 45555556566666666543
Q ss_pred CCcEEEEecccc-cHHHHHchh
Q 005605 215 PDLKLVVMSATL-EAEKFQGYF 235 (688)
Q Consensus 215 ~~~~vil~SAT~-~~~~~~~~~ 235 (688)
+++.+|+.||.| +++.+++.+
T Consensus 182 egr~viFSSH~m~EvealCDrv 203 (245)
T COG4555 182 EGRAVIFSSHIMQEVEALCDRV 203 (245)
T ss_pred CCcEEEEecccHHHHHHhhheE
Confidence 377888889999 577788764
No 182
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.10 E-value=1.3e-10 Score=116.32 Aligned_cols=148 Identities=18% Similarity=0.300 Sum_probs=100.6
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC--ccccCceEEEEcCCchhhhccHHHHHHHhhc---
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD--- 141 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~--- 141 (688)
+..|+.++|.|+|||||||++..+. +++.++.. ....+.+.++++.+......++.+++.....
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 107 (218)
T cd03266 28 VKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYG 107 (218)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcC
Confidence 5689999999999999999987432 11111111 0112345677777755555678777643211
Q ss_pred c----------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHH
Q 005605 142 V----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (688)
Q Consensus 142 ~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~ 209 (688)
. .....+|. ....+..+..+|+|+.+++.++++++.+++++|+|| ++.|....+.+..++++
T Consensus 108 ~~~~~~~~~~~~~l~~~~l------~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 181 (218)
T cd03266 108 LKGDELTARLEELADRLGM------EELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQ 181 (218)
T ss_pred CCHHHHHHHHHHHHHHcCC------HHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHH
Confidence 0 01111111 112345667899999999999999999999999999 77888888889999988
Q ss_pred HHhcCCCcEEEEeccccc-HHHHHc
Q 005605 210 VLKNRPDLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 210 i~~~~~~~~vil~SAT~~-~~~~~~ 233 (688)
+.+. +..+|++||.++ ...+++
T Consensus 182 ~~~~--~~tii~~tH~~~~~~~~~d 204 (218)
T cd03266 182 LRAL--GKCILFSTHIMQEVERLCD 204 (218)
T ss_pred HHHC--CCEEEEEeCCHHHHHHhcC
Confidence 7543 678999999884 344554
No 183
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.10 E-value=1.8e-10 Score=114.87 Aligned_cols=155 Identities=17% Similarity=0.228 Sum_probs=99.0
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc-cccCceEEEEcCCchhhhccHHHHHHHhhccc-c
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP-DRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT-I 144 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~-~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~-~ 144 (688)
+.+|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+......++.+++....... .
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~ 102 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKV 102 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCC
Confidence 5689999999999999999987433 111111110 01124566676665444567777764321100 0
Q ss_pred -----cceec-eeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCC
Q 005605 145 -----GEEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPD 216 (688)
Q Consensus 145 -----~~~vg-~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~ 216 (688)
...+. +...+.-....+..+..+|+|+.+++.++++++.+++++++|| +++|......+.++++++.++. +
T Consensus 103 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~ 181 (213)
T cd03301 103 PKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRL-G 181 (213)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-C
Confidence 00000 0000000112345667899999999999999999999999999 7777788888888888876543 5
Q ss_pred cEEEEeccccc-HHHHHc
Q 005605 217 LKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 217 ~~vil~SAT~~-~~~~~~ 233 (688)
..+|+.||.++ ...+++
T Consensus 182 ~tvi~~sH~~~~~~~~~d 199 (213)
T cd03301 182 TTTIYVTHDQVEAMTMAD 199 (213)
T ss_pred CEEEEEeCCHHHHHHhcC
Confidence 78999999874 344443
No 184
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.10 E-value=1.7e-10 Score=115.77 Aligned_cols=156 Identities=19% Similarity=0.251 Sum_probs=100.4
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC--ccccCceEEEEcCCchhhhccHHHHHHHhh---c
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEM---D 141 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~---~ 141 (688)
+.+|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++.+......++.+++.... +
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 102 (220)
T cd03265 23 VRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYG 102 (220)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcC
Confidence 5689999999999999999987433 11111110 011224566777665555567777764321 1
Q ss_pred ccc---ccee-ceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCC
Q 005605 142 VTI---GEEV-GYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRP 215 (688)
Q Consensus 142 ~~~---~~~v-g~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~ 215 (688)
... ...+ .+...+.-....+..+..+|+|+.+++.++++++.+++++|+|| +++|......+..+++++.+..
T Consensus 103 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~- 181 (220)
T cd03265 103 VPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEF- 181 (220)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhc-
Confidence 000 0000 00000100112345677899999999999999999999999999 6777778888888888876643
Q ss_pred CcEEEEeccccc-HHHHHch
Q 005605 216 DLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 216 ~~~vil~SAT~~-~~~~~~~ 234 (688)
+..+|+.||.++ ...+++.
T Consensus 182 ~~tvi~~tH~~~~~~~~~d~ 201 (220)
T cd03265 182 GMTILLTTHYMEEAEQLCDR 201 (220)
T ss_pred CCEEEEEeCCHHHHHHhCCE
Confidence 578999999885 3445543
No 185
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.09 E-value=2e-10 Score=110.66 Aligned_cols=60 Identities=20% Similarity=0.264 Sum_probs=52.7
Q ss_pred cCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEecccccH
Q 005605 167 LTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (688)
Q Consensus 167 lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~~ 228 (688)
+|+|+.+++.++++++.+++++|+|| ++.|......+.++++.+.+. +..+|+.||.++.
T Consensus 97 LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~--~~tii~~sh~~~~ 158 (173)
T cd03246 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAA--GATRIVIAHRPET 158 (173)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHH
Confidence 89999999999999999999999999 778888888888998887543 6789999998853
No 186
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.09 E-value=1.7e-10 Score=118.20 Aligned_cols=150 Identities=19% Similarity=0.259 Sum_probs=101.4
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhcCccCC------Cc---cccCceEEEEcCCchhhhccHHHHHHHhhc-------
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIE------TP---DRRRKMMIACTQPRRVAAMSVSRRVAEEMD------- 141 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~------~~---~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~------- 141 (688)
+.+|+.++|+|+|||||||++..+.=...... .. ...+.+.++++.+......++.+++.....
T Consensus 35 i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~ 114 (257)
T PRK11247 35 IPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAA 114 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHHHH
Confidence 57899999999999999999875431110000 00 012345667776655555677777653211
Q ss_pred ccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEE
Q 005605 142 VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKL 219 (688)
Q Consensus 142 ~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~v 219 (688)
......+|.. ...+..+..+|+|+.+++.+++.++.+++++|+|| +++|......+.++++++.+.. +..+
T Consensus 115 ~~~l~~~gl~------~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~-~~tv 187 (257)
T PRK11247 115 LQALAAVGLA------DRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQH-GFTV 187 (257)
T ss_pred HHHHHHcCCh------hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHc-CCEE
Confidence 0111122211 12345667899999999999999999999999999 7788888888889888876543 6789
Q ss_pred EEeccccc-HHHHHch
Q 005605 220 VVMSATLE-AEKFQGY 234 (688)
Q Consensus 220 il~SAT~~-~~~~~~~ 234 (688)
|++||.++ ...+++.
T Consensus 188 iivsHd~~~~~~~~d~ 203 (257)
T PRK11247 188 LLVTHDVSEAVAMADR 203 (257)
T ss_pred EEEeCCHHHHHHhCCE
Confidence 99999985 3455543
No 187
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.09 E-value=1.8e-10 Score=121.31 Aligned_cols=155 Identities=16% Similarity=0.209 Sum_probs=102.8
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc--cccCceEEEEcCCchhhhccHHHHHHHh---hc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP--DRRRKMMIACTQPRRVAAMSVSRRVAEE---MD 141 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~--~~~~~~~i~~t~p~~~~~~~v~~~v~~~---~~ 141 (688)
+..|+.++++|+|||||||++..+. +++.++... ...+.+.++++.+......++.+++... .+
T Consensus 27 i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 106 (303)
T TIGR01288 27 IARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG 106 (303)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcC
Confidence 5789999999999999999987533 111111110 0123466777776655566777776421 11
Q ss_pred cccc---cee-ceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCC
Q 005605 142 VTIG---EEV-GYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRP 215 (688)
Q Consensus 142 ~~~~---~~v-g~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~ 215 (688)
.... ..+ .....+.-....++.+..+|+|+.+++.++++++.+++++|||| +++|....+.+..+++++.+.
T Consensus 107 ~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-- 184 (303)
T TIGR01288 107 MSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR-- 184 (303)
T ss_pred CCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC--
Confidence 1000 000 00000110112356677899999999999999999999999999 788888888899999988653
Q ss_pred CcEEEEeccccc-HHHHHch
Q 005605 216 DLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 216 ~~~vil~SAT~~-~~~~~~~ 234 (688)
+..+|+.||.++ .+.+++.
T Consensus 185 g~til~~sH~~~~~~~~~d~ 204 (303)
T TIGR01288 185 GKTILLTTHFMEEAERLCDR 204 (303)
T ss_pred CCEEEEECCCHHHHHHhCCE
Confidence 678999999985 4556554
No 188
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.09 E-value=2e-10 Score=116.45 Aligned_cols=154 Identities=21% Similarity=0.265 Sum_probs=100.0
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCcc----ccCceEEEEcCCchhhhccHHHHHHHhhcc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD----RRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~----~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (688)
+.+|+.++|+|+|||||||++..+. +++.++.... ....+.++++.+......++.+++......
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~ 102 (236)
T cd03219 23 VRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQA 102 (236)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhh
Confidence 5789999999999999999987432 1111111100 012456677777655566787776532210
Q ss_pred ccc----------------ceec-eeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHH
Q 005605 143 TIG----------------EEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (688)
Q Consensus 143 ~~~----------------~~vg-~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~l 203 (688)
... ..+. +...+.-....+..+..+|+|+.+++.++++++.+++++|+|| +++|......+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l 182 (236)
T cd03219 103 RTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEEL 182 (236)
T ss_pred ccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 000 0000 0000100112345677899999999999999999999999999 77777778888
Q ss_pred HHHHHHHHhcCCCcEEEEecccccH-HHHHc
Q 005605 204 FGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (688)
Q Consensus 204 l~~l~~i~~~~~~~~vil~SAT~~~-~~~~~ 233 (688)
..+++++.+. +..+|+.||.++. ..+++
T Consensus 183 ~~~l~~~~~~--~~tii~vsH~~~~~~~~~d 211 (236)
T cd03219 183 AELIRELRER--GITVLLVEHDMDVVMSLAD 211 (236)
T ss_pred HHHHHHHHHC--CCEEEEEecCHHHHHHhCC
Confidence 8888887652 6789999998853 44444
No 189
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.09 E-value=1.9e-10 Score=112.57 Aligned_cols=142 Identities=20% Similarity=0.357 Sum_probs=95.1
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc-----cccCceEEEEcCCc-hhhhccHHHHHHHhh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP-----DRRRKMMIACTQPR-RVAAMSVSRRVAEEM 140 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~-----~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~ 140 (688)
+.+|+.++|+|+|||||||++..+. +++.++... ...+.+.+++++|. .....++.+++....
T Consensus 15 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl~~~~ 94 (190)
T TIGR01166 15 AERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGP 94 (190)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHHHHHHHH
Confidence 6789999999999999999987332 222111100 01224566777663 233357777664321
Q ss_pred ---ccc----------ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHH
Q 005605 141 ---DVT----------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (688)
Q Consensus 141 ---~~~----------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ 205 (688)
+.. +...+|. ....+..+..+|+|+.+++.++++++.+++++|+|| ++.|......+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~l~~~~l------~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~ 168 (190)
T TIGR01166 95 LNLGLSEAEVERRVREALTAVGA------SGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLA 168 (190)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCc------hhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 100 0111111 112345677899999999999999999999999999 7788888888899
Q ss_pred HHHHHHhcCCCcEEEEeccccc
Q 005605 206 LLKEVLKNRPDLKLVVMSATLE 227 (688)
Q Consensus 206 ~l~~i~~~~~~~~vil~SAT~~ 227 (688)
+++++.+. +..+|+.||.++
T Consensus 169 ~l~~~~~~--~~tili~sH~~~ 188 (190)
T TIGR01166 169 ILRRLRAE--GMTVVISTHDVD 188 (190)
T ss_pred HHHHHHHc--CCEEEEEeeccc
Confidence 99887543 678999999764
No 190
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.09 E-value=2.2e-10 Score=118.49 Aligned_cols=150 Identities=21% Similarity=0.291 Sum_probs=101.4
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCcc-------ccCceEEEEcCCchhhhccHHHHHHHh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD-------RRRKMMIACTQPRRVAAMSVSRRVAEE 139 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~-------~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (688)
+..|+.++|+|+|||||||++..+. +++.++.... ..+.+.++++.+......++.+++...
T Consensus 47 i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 126 (269)
T cd03294 47 VREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFG 126 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHH
Confidence 6789999999999999999987432 2221111100 012456777766555556777776532
Q ss_pred hcc-------------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHH
Q 005605 140 MDV-------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (688)
Q Consensus 140 ~~~-------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll 204 (688)
... .+...+|. ....+..+..+|+|+.+++.++++++.+++++|+|| +++|......+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~l~~~~l------~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~ 200 (269)
T cd03294 127 LEVQGVPRAEREERAAEALELVGL------EGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQ 200 (269)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCC------HhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH
Confidence 110 00111111 112355667899999999999999999999999999 777888888888
Q ss_pred HHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 205 GLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 205 ~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
.+++++.+.. +..+|+.||.++ ...++++
T Consensus 201 ~~l~~~~~~~-g~tiii~tH~~~~~~~~~d~ 230 (269)
T cd03294 201 DELLRLQAEL-QKTIVFITHDLDEALRLGDR 230 (269)
T ss_pred HHHHHHHHhc-CCEEEEEeCCHHHHHHhcCE
Confidence 8888876543 678999999885 3455543
No 191
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.09 E-value=4e-10 Score=120.79 Aligned_cols=151 Identities=19% Similarity=0.268 Sum_probs=107.2
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhc-------------CccCCC-ccccCceEEEEcCCchhhhccHHHHHHHhhcc-
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLE-------------GVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~-------------~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (688)
+..|+.++++||+||||||++..+.-. +.++.. ....+.+.++++.+.....+++.++++.....
T Consensus 28 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~ 107 (362)
T TIGR03258 28 IEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ 107 (362)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc
Confidence 568999999999999999998754311 111111 11134577888888777788999988643211
Q ss_pred ------------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHH
Q 005605 143 ------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (688)
Q Consensus 143 ------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~ 208 (688)
.+...+|. ....+..+..+|+|+.+|+.++++++.++++++||| +.+|......+...++
T Consensus 108 ~~~~~~~~~~v~~~l~~~gL------~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~ 181 (362)
T TIGR03258 108 KMPKADIAERVADALKLVGL------GDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIA 181 (362)
T ss_pred CCCHHHHHHHHHHHHHhcCC------CchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHH
Confidence 01111221 122456778899999999999999999999999999 6677777888888888
Q ss_pred HHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 209 EVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 209 ~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
++.+...+..+|+.||.++ +..+++.
T Consensus 182 ~l~~~~~g~til~vTHd~~ea~~l~dr 208 (362)
T TIGR03258 182 ALHEELPELTILCVTHDQDDALTLADK 208 (362)
T ss_pred HHHHhCCCCEEEEEeCCHHHHHHhCCE
Confidence 8876533678999999985 4556554
No 192
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.09 E-value=1.7e-09 Score=115.27 Aligned_cols=276 Identities=24% Similarity=0.244 Sum_probs=158.2
Q ss_pred CCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhcccccceeceeeeecccccc
Q 005605 81 NQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSA 160 (688)
Q Consensus 81 g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~ 160 (688)
.+++.=+|||.||||--..+-+.+.. .-++.-|+++.|..|++++... ++.+-...|-..++..-...
T Consensus 191 RkIi~H~GPTNSGKTy~ALqrl~~ak-----------sGvycGPLrLLA~EV~~r~na~-gipCdL~TGeE~~~~~~~~~ 258 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYRALQRLKSAK-----------SGVYCGPLRLLAHEVYDRLNAL-GIPCDLLTGEERRFVLDNGN 258 (700)
T ss_pred heEEEEeCCCCCchhHHHHHHHhhhc-----------cceecchHHHHHHHHHHHhhhc-CCCccccccceeeecCCCCC
Confidence 45677799999999976655443321 1234579999999999998653 33333334433333222111
Q ss_pred cccccccCHHHHHHHHhccccccCCcEEeecccCc-Ch-----hhHHHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHc
Q 005605 161 RTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHE-RT-----LATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 161 ~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEahe-r~-----~~~d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~ 233 (688)
.....-+|-.+. ..-..+++.||||+.. +. .++..++++..+=.+...+..+ ++ +..+..
T Consensus 259 ~a~hvScTVEM~-------sv~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGepsv------ldlV~~i~k 325 (700)
T KOG0953|consen 259 PAQHVSCTVEMV-------SVNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGEPSV------LDLVRKILK 325 (700)
T ss_pred cccceEEEEEEe-------ecCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCCchH------HHHHHHHHh
Confidence 111122221111 1234678999999642 11 1123344444332222211110 11 111111
Q ss_pred hhcCCCeeeeCCcccccceeecCCCchhHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCe
Q 005605 234 YFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPV 313 (688)
Q Consensus 234 ~~~~~p~~~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~ 313 (688)
..|.. +++++-+.-..-.+ .+.+..-..+-.+|+++|=+ ++++|-.+...+.+. ++.
T Consensus 326 ---------~TGd~--vev~~YeRl~pL~v---~~~~~~sl~nlk~GDCvV~F-Skk~I~~~k~kIE~~--------g~~ 382 (700)
T KOG0953|consen 326 ---------MTGDD--VEVREYERLSPLVV---EETALGSLSNLKPGDCVVAF-SKKDIFTVKKKIEKA--------GNH 382 (700)
T ss_pred ---------hcCCe--eEEEeecccCccee---hhhhhhhhccCCCCCeEEEe-ehhhHHHHHHHHHHh--------cCc
Confidence 12222 22221111100000 11222233345689988876 577899999999886 366
Q ss_pred EEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecc
Q 005605 314 KVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPIS 393 (688)
Q Consensus 314 ~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s 393 (688)
.+..+||+||++.|..--..|-+.. ...+|+||||....|++.. |+-||=+.+.|.. .-.+.+++
T Consensus 383 k~aVIYGsLPPeTr~aQA~~FNd~~-----~e~dvlVAsDAIGMGLNL~-IrRiiF~sl~Kys---------g~e~~~it 447 (700)
T KOG0953|consen 383 KCAVIYGSLPPETRLAQAALFNDPS-----NECDVLVASDAIGMGLNLN-IRRIIFYSLIKYS---------GRETEDIT 447 (700)
T ss_pred ceEEEecCCCCchhHHHHHHhCCCC-----CccceEEeecccccccccc-eeEEEEeecccCC---------cccceecc
Confidence 6999999999987755433343310 1679999999999999986 7777766664432 23445899
Q ss_pred hhhHHhhccccCCCC----CceEEEccchh
Q 005605 394 KASAHQRSGRAGRTQ----PGKCFRLYTEK 419 (688)
Q Consensus 394 ~~~~~qR~GRaGR~~----~G~~~~l~t~~ 419 (688)
.++..|=+|||||.+ .|.+-+|+.++
T Consensus 448 ~sqikQIAGRAGRf~s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 448 VSQIKQIAGRAGRFGSKYPQGEVTTLHSED 477 (700)
T ss_pred HHHHHHHhhcccccccCCcCceEEEeeHhh
Confidence 999999999999983 48888888764
No 193
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.09 E-value=1.8e-10 Score=114.20 Aligned_cols=143 Identities=20% Similarity=0.287 Sum_probs=96.9
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC--c-----cccCceEEEEcCCchhhhccHHHHHHHh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--P-----DRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~--~-----~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (688)
+..|+.++|+|+|||||||++.... +++.++.. . ...+.+.++++.+......++.+++...
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~ 100 (206)
T TIGR03608 21 IEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLG 100 (206)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHH
Confidence 5689999999999999999987432 12211110 0 0123456667666555556777766432
Q ss_pred hc---c----------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHH
Q 005605 140 MD---V----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (688)
Q Consensus 140 ~~---~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll 204 (688)
.. . .....+|. ....+..+..+|+|+.+++.++++++.+++++|+|| ++.|....+.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~~l------~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~ 174 (206)
T TIGR03608 101 LKYKKLSKKEKREKKKEALEKVGL------NLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVL 174 (206)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCc------hhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHH
Confidence 10 0 01111111 012345667899999999999999999999999999 777778888888
Q ss_pred HHHHHHHhcCCCcEEEEecccccH
Q 005605 205 GLLKEVLKNRPDLKLVVMSATLEA 228 (688)
Q Consensus 205 ~~l~~i~~~~~~~~vil~SAT~~~ 228 (688)
++++++.+. +..+|+.||.++.
T Consensus 175 ~~l~~~~~~--~~tii~~sh~~~~ 196 (206)
T TIGR03608 175 DLLLELNDE--GKTIIIVTHDPEV 196 (206)
T ss_pred HHHHHHHhc--CCEEEEEeCCHHH
Confidence 888887643 6789999999854
No 194
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.09 E-value=3.8e-10 Score=109.63 Aligned_cols=129 Identities=18% Similarity=0.260 Sum_probs=85.0
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHh-----------cCccCCCc----cccCceEEEEcCC---chhhhccHHHHHHHh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVL-----------EGVDIETP----DRRRKMMIACTQP---RRVAAMSVSRRVAEE 139 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll-----------~~~~~~~~----~~~~~~~i~~t~p---~~~~~~~v~~~v~~~ 139 (688)
+..|+.++|+|+|||||||++..+.- ++.++... ...+.+.++++++ ......++.+++...
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~ 102 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALS 102 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHH
Confidence 56899999999999999999875331 11111100 0011233333332 112223333333211
Q ss_pred hcccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCc
Q 005605 140 MDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDL 217 (688)
Q Consensus 140 ~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~ 217 (688)
. .+|+|+.+++.++++++.+++++++|| ++.|....+.+.++++.+.+. +.
T Consensus 103 ~-------------------------~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~ 155 (182)
T cd03215 103 S-------------------------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADA--GK 155 (182)
T ss_pred h-------------------------hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHC--CC
Confidence 0 189999999999999999999999999 777778888888888887543 67
Q ss_pred EEEEeccccc-HHHHHc
Q 005605 218 KLVVMSATLE-AEKFQG 233 (688)
Q Consensus 218 ~vil~SAT~~-~~~~~~ 233 (688)
.+|+.||.++ ...+++
T Consensus 156 tiii~sh~~~~~~~~~d 172 (182)
T cd03215 156 AVLLISSELDELLGLCD 172 (182)
T ss_pred EEEEEeCCHHHHHHhCC
Confidence 8999999873 455554
No 195
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.08 E-value=1.7e-10 Score=115.06 Aligned_cols=154 Identities=18% Similarity=0.292 Sum_probs=99.5
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC-----ccccCceEEEEcCCchhhhccHHHHHHHhh-
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-----PDRRRKMMIACTQPRRVAAMSVSRRVAEEM- 140 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~- 140 (688)
+..|+.++|+|+|||||||++.... +++.++.. ....+.+.++++.+......++.+++....
T Consensus 23 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~ 102 (213)
T cd03262 23 VKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPI 102 (213)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHH
Confidence 5689999999999999999887432 22211110 001234567777766555567777764321
Q ss_pred ---ccc---ccceec-eeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHH
Q 005605 141 ---DVT---IGEEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVL 211 (688)
Q Consensus 141 ---~~~---~~~~vg-~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~ 211 (688)
+.. ....+. ....+.-....+..+..+|+|+.+++.++++++.+++++|+|| +++|......+..+++++.
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 182 (213)
T cd03262 103 KVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLA 182 (213)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 100 000000 0000000112355677899999999999999999999999999 6777777888888888876
Q ss_pred hcCCCcEEEEeccccc-HHHHHc
Q 005605 212 KNRPDLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 212 ~~~~~~~vil~SAT~~-~~~~~~ 233 (688)
+. +..+|+.||.++ ...+++
T Consensus 183 ~~--~~tvi~~sh~~~~~~~~~d 203 (213)
T cd03262 183 EE--GMTMVVVTHEMGFAREVAD 203 (213)
T ss_pred Hc--CCEEEEEeCCHHHHHHhCC
Confidence 53 678999999874 344544
No 196
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.08 E-value=2e-10 Score=114.73 Aligned_cols=142 Identities=26% Similarity=0.345 Sum_probs=96.9
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc------cccCceEEEEcCCchhhhccHHHHHHHhh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP------DRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~------~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (688)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+......++.+++....
T Consensus 24 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~ 103 (214)
T cd03292 24 ISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFAL 103 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHH
Confidence 5689999999999999999987432 122111110 01234667777766555567777765321
Q ss_pred c---c----------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHH
Q 005605 141 D---V----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (688)
Q Consensus 141 ~---~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ 205 (688)
. . .....+|.. ...+..+..+|+|+.+++.++++++.+++++|+|| ++.|....+.+..
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~ 177 (214)
T cd03292 104 EVTGVPPREIRKRVPAALELVGLS------HKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMN 177 (214)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCH------HHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHH
Confidence 1 0 000111110 11245567899999999999999999999999999 7788888888889
Q ss_pred HHHHHHhcCCCcEEEEeccccc
Q 005605 206 LLKEVLKNRPDLKLVVMSATLE 227 (688)
Q Consensus 206 ~l~~i~~~~~~~~vil~SAT~~ 227 (688)
+++++.+. +..+|+.||..+
T Consensus 178 ~l~~~~~~--~~tiiivtH~~~ 197 (214)
T cd03292 178 LLKKINKA--GTTVVVATHAKE 197 (214)
T ss_pred HHHHHHHc--CCEEEEEeCCHH
Confidence 99887543 678999999874
No 197
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.08 E-value=1.8e-10 Score=114.54 Aligned_cols=154 Identities=18% Similarity=0.213 Sum_probs=99.6
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC-ccccCceEEEEcCCchhhhccHHHHHHHhhccc-c
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT-I 144 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~-~ 144 (688)
+.+|+.++|.|+|||||||++..+. +++.++.. ....+.+.++++.+......++.+++....... .
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 102 (208)
T cd03268 23 VKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGI 102 (208)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCC
Confidence 5689999999999999999987533 11111111 011224556676666555678887764322100 0
Q ss_pred -cceecee-eeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEE
Q 005605 145 -GEEVGYS-IRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLV 220 (688)
Q Consensus 145 -~~~vg~~-~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vi 220 (688)
...+... ..+.-....+..+..+|+|+.+++.++++++.+++++++|| +++|......+..+++++.+. +..+|
T Consensus 103 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~tii 180 (208)
T cd03268 103 RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQ--GITVL 180 (208)
T ss_pred cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHC--CCEEE
Confidence 0000000 00000011245567799999999999999999999999999 777777788888888887653 67899
Q ss_pred Eeccccc-HHHHHc
Q 005605 221 VMSATLE-AEKFQG 233 (688)
Q Consensus 221 l~SAT~~-~~~~~~ 233 (688)
+.||.++ ...+++
T Consensus 181 ~~tH~~~~~~~~~d 194 (208)
T cd03268 181 ISSHLLSEIQKVAD 194 (208)
T ss_pred EEcCCHHHHHHhcC
Confidence 9999885 344554
No 198
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.08 E-value=2.3e-10 Score=114.13 Aligned_cols=155 Identities=15% Similarity=0.267 Sum_probs=101.2
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC-ccccCceEEEEcCCchhhhccHHHHHHHhhccccc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIG 145 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~ 145 (688)
+..|+.++|.|+|||||||++..+. +++.++.. ....+.+.++++.+......++.+++.........
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~ 100 (213)
T TIGR01277 21 VADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLK 100 (213)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccCC
Confidence 6789999999999999999987433 22221111 01123466778777665556887777532110000
Q ss_pred ------ceec-eeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCC
Q 005605 146 ------EEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPD 216 (688)
Q Consensus 146 ------~~vg-~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~ 216 (688)
..+. +...++-....+..+..+|+|+.+++.++++++.+++++|+|| ++.|......+.++++.+.+.. +
T Consensus 101 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~-~ 179 (213)
T TIGR01277 101 LNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSER-Q 179 (213)
T ss_pred ccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhc-C
Confidence 0000 0000000112345667899999999999999999999999999 6777777778888888876543 6
Q ss_pred cEEEEecccccH-HHHHc
Q 005605 217 LKLVVMSATLEA-EKFQG 233 (688)
Q Consensus 217 ~~vil~SAT~~~-~~~~~ 233 (688)
..+|+.||..+. ..+++
T Consensus 180 ~tii~vsh~~~~~~~~~d 197 (213)
T TIGR01277 180 RTLLMVTHHLSDARAIAS 197 (213)
T ss_pred CEEEEEeCCHHHHHhhcC
Confidence 789999998853 44444
No 199
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.08 E-value=1.8e-10 Score=119.81 Aligned_cols=149 Identities=21% Similarity=0.298 Sum_probs=101.2
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC---ccccCceEEEEcCCc-hhhhccHHHHHHHhhc-
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPR-RVAAMSVSRRVAEEMD- 141 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~~- 141 (688)
+..|+.++|+|+|||||||++..+. +++.++.. ....+.+.+++++|. .....++.+++.....
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~ 109 (279)
T PRK13650 30 VKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLEN 109 (279)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHh
Confidence 5689999999999999999987432 22222211 011234567777763 4445677777753211
Q ss_pred --c----------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHH
Q 005605 142 --V----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (688)
Q Consensus 142 --~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l 207 (688)
. .....+|.. ...+..+..+|+|+.+++.++++++.+++++|+|| +++|......+..++
T Consensus 110 ~~~~~~~~~~~~~~~l~~~gL~------~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l 183 (279)
T PRK13650 110 KGIPHEEMKERVNEALELVGMQ------DFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTI 183 (279)
T ss_pred CCCCHHHHHHHHHHHHHHCCCH------hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 0 001111111 12345667899999999999999999999999999 777777888888888
Q ss_pred HHHHhcCCCcEEEEecccccHHHHHc
Q 005605 208 KEVLKNRPDLKLVVMSATLEAEKFQG 233 (688)
Q Consensus 208 ~~i~~~~~~~~vil~SAT~~~~~~~~ 233 (688)
+.+.+.. +..+|+.||.++.-.+++
T Consensus 184 ~~l~~~~-g~tilivtH~~~~~~~~d 208 (279)
T PRK13650 184 KGIRDDY-QMTVISITHDLDEVALSD 208 (279)
T ss_pred HHHHHhc-CCEEEEEecCHHHHHhCC
Confidence 8886643 679999999986433333
No 200
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.08 E-value=2.1e-10 Score=114.24 Aligned_cols=154 Identities=21% Similarity=0.283 Sum_probs=97.8
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC---ccccCceEEEEcCCch-hhhccHHHHHHHhhc-
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRR-VAAMSVSRRVAEEMD- 141 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~-~~~~~v~~~v~~~~~- 141 (688)
+.+|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++.+.. ....++.+++.....
T Consensus 24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~ 103 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLEN 103 (211)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHH
Confidence 5689999999999999999987432 11111110 0011345566766532 344577766643211
Q ss_pred --ccc---cceec-eeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhc
Q 005605 142 --VTI---GEEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKN 213 (688)
Q Consensus 142 --~~~---~~~vg-~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~ 213 (688)
... ...+. +...++-....+..+..+|+|+.+++.++++++.+++++|+|| .++|......+.++++++.+.
T Consensus 104 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~ 183 (211)
T cd03225 104 LGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE 183 (211)
T ss_pred cCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc
Confidence 000 00000 0000000112345667899999999999999999999999999 777888888888888887654
Q ss_pred CCCcEEEEeccccc-HHHHHc
Q 005605 214 RPDLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 214 ~~~~~vil~SAT~~-~~~~~~ 233 (688)
+..+|+.||.++ ...+++
T Consensus 184 --~~tvi~~sH~~~~~~~~~d 202 (211)
T cd03225 184 --GKTIIIVTHDLDLLLELAD 202 (211)
T ss_pred --CCEEEEEeCCHHHHHHhCC
Confidence 678999999874 344444
No 201
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.08 E-value=2.4e-10 Score=122.78 Aligned_cols=150 Identities=21% Similarity=0.264 Sum_probs=103.4
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc-------cccCceEEEEcCCchhhhccHHHHHHHh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP-------DRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~-------~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (688)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+.....+++.+++...
T Consensus 20 i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~ 99 (354)
T TIGR02142 20 LPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYG 99 (354)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHH
Confidence 5689999999999999999987432 222211110 1123466778777666667888887642
Q ss_pred hcc-----------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHH
Q 005605 140 MDV-----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL 206 (688)
Q Consensus 140 ~~~-----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~ 206 (688)
... .+...+|. ....+..+..+|+|+.+++.++++++.++++++||| +++|......+..+
T Consensus 100 ~~~~~~~~~~~~~~~~l~~~gL------~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~ 173 (354)
T TIGR02142 100 MKRARPSERRISFERVIELLGI------GHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPY 173 (354)
T ss_pred hhccChhHHHHHHHHHHHHcCC------hhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence 210 00111111 112355677899999999999999999999999999 77777888888899
Q ss_pred HHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 207 LKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 207 l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
++++.+.. +..+|+.||.++ ...+++.
T Consensus 174 L~~l~~~~-g~tiiivtH~~~~~~~~~d~ 201 (354)
T TIGR02142 174 LERLHAEF-GIPILYVSHSLQEVLRLADR 201 (354)
T ss_pred HHHHHHhc-CCEEEEEecCHHHHHHhCCE
Confidence 98886653 678999999985 3445543
No 202
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.07 E-value=1.7e-10 Score=115.89 Aligned_cols=154 Identities=17% Similarity=0.252 Sum_probs=101.1
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCcc----ccCceEEEEcCCchhhhccHHHHHHHhhcc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD----RRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~----~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (688)
+..|+.++|+|+|||||||++.... +++.++.... ..+.+.++++.+......++.+++......
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~ 102 (222)
T cd03224 23 VPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYA 102 (222)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhh
Confidence 5689999999999999999987432 1221111100 123466777776655556777776532211
Q ss_pred c----cccee-ceeeeecc-cccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcC
Q 005605 143 T----IGEEV-GYSIRFED-CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNR 214 (688)
Q Consensus 143 ~----~~~~v-g~~~~~~~-~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~ 214 (688)
. ....+ .....+.. ....+..+..+|+|+.+++.++++++.+++++++|| +++|....+.+..+++++.+.
T Consensus 103 ~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~- 181 (222)
T cd03224 103 RRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE- 181 (222)
T ss_pred cCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHC-
Confidence 0 00000 00000100 112345667899999999999999999999999999 778888888899999887652
Q ss_pred CCcEEEEeccccc-HHHHHc
Q 005605 215 PDLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 215 ~~~~vil~SAT~~-~~~~~~ 233 (688)
+..+|+.||.++ ...+++
T Consensus 182 -~~tiii~sH~~~~~~~~~d 200 (222)
T cd03224 182 -GVTILLVEQNARFALEIAD 200 (222)
T ss_pred -CCEEEEEeCCHHHHHHhcc
Confidence 678999999985 355554
No 203
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.07 E-value=1.9e-10 Score=114.75 Aligned_cols=156 Identities=17% Similarity=0.224 Sum_probs=98.8
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHHhcCccCC------Cc---cccCceEEEEcCCchh--hhccHHHHHHHhhcccc-
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIE------TP---DRRRKMMIACTQPRRV--AAMSVSRRVAEEMDVTI- 144 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~------~~---~~~~~~~i~~t~p~~~--~~~~v~~~v~~~~~~~~- 144 (688)
.+.+|+.++|+|+|||||||++..+.=...... .. ...+.+.++++++... ...++.+++........
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~ 100 (213)
T cd03235 21 EVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKG 100 (213)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhccccccc
Confidence 357899999999999999999874321100000 00 0123456667665432 12577777654211000
Q ss_pred ---------cceeceee-eecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHh
Q 005605 145 ---------GEEVGYSI-RFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLK 212 (688)
Q Consensus 145 ---------~~~vg~~~-~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~ 212 (688)
...+.... .+.-....+..+..+|+|+.+++.++++++.+++++|+|| +++|......+.++++++.+
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 180 (213)
T cd03235 101 LFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR 180 (213)
T ss_pred cccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 00000000 0000011345667899999999999999999999999999 77888888888899988765
Q ss_pred cCCCcEEEEeccccc-HHHHHch
Q 005605 213 NRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 213 ~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
. +..+|+.||.++ ...++++
T Consensus 181 ~--~~tvi~~sH~~~~~~~~~d~ 201 (213)
T cd03235 181 E--GMTILVVTHDLGLVLEYFDR 201 (213)
T ss_pred c--CCEEEEEeCCHHHHHHhcCE
Confidence 3 678999999985 3455543
No 204
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.07 E-value=2.5e-09 Score=126.57 Aligned_cols=114 Identities=14% Similarity=0.105 Sum_probs=92.9
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCcccc
Q 005605 278 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAET 357 (688)
Q Consensus 278 ~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~ 357 (688)
.+.++|||..-....+.+.+.|... ++....+||+++.++|+.+++.|... .....-+|+||.++..
T Consensus 486 ~g~KVLIFSQft~~LdiLed~L~~~---------g~~y~rIdGsts~~eRq~~Id~Fn~~----~s~~~VfLLSTrAGGl 552 (1033)
T PLN03142 486 RDSRVLIFSQMTRLLDILEDYLMYR---------GYQYCRIDGNTGGEDRDASIDAFNKP----GSEKFVFLLSTRAGGL 552 (1033)
T ss_pred cCCeEEeehhHHHHHHHHHHHHHHc---------CCcEEEECCCCCHHHHHHHHHHhccc----cCCceEEEEecccccc
Confidence 3458999998877777777777643 68889999999999999999999543 1113567999999999
Q ss_pred CcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC---CCceEEEccchhhhc
Q 005605 358 SLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT---QPGKCFRLYTEKSFN 422 (688)
Q Consensus 358 gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~---~~G~~~~l~t~~~~~ 422 (688)
||++...++||.++. |-+.....|+.||+-|. ++=.+|+|+++...+
T Consensus 553 GINLt~Ad~VIiyD~------------------dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIE 602 (1033)
T PLN03142 553 GINLATADIVILYDS------------------DWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIE 602 (1033)
T ss_pred CCchhhCCEEEEeCC------------------CCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHH
Confidence 999999999999888 88889999999999887 334689999876543
No 205
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.07 E-value=2.7e-10 Score=120.91 Aligned_cols=151 Identities=19% Similarity=0.275 Sum_probs=104.4
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc------cccCceEEEEcCCc--hhhhccHHHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP------DRRRKMMIACTQPR--RVAAMSVSRRVAE 138 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~------~~~~~~~i~~t~p~--~~~~~~v~~~v~~ 138 (688)
+.+|+.++|+|++||||||++..+. +++.++... ...+.+.++++.|. ....+++.+++..
T Consensus 44 i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~ 123 (331)
T PRK15079 44 LYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAE 123 (331)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHH
Confidence 6799999999999999999887432 233222211 01235778888873 3345677777654
Q ss_pred hhc-----c----------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHH
Q 005605 139 EMD-----V----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (688)
Q Consensus 139 ~~~-----~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d 201 (688)
... . .+...+|.. ....+..+..+|+|+.+|+.++++++.++++||+|| ..+|.....
T Consensus 124 ~l~~~~~~~~~~~~~~~~~~~l~~vgl~-----~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~ 198 (331)
T PRK15079 124 PLRTYHPKLSRQEVKDRVKAMMLKVGLL-----PNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQA 198 (331)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHcCCC-----hHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 221 0 011122210 012356677899999999999999999999999999 667777788
Q ss_pred HHHHHHHHHHhcCCCcEEEEecccccH-HHHHch
Q 005605 202 VLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (688)
Q Consensus 202 ~ll~~l~~i~~~~~~~~vil~SAT~~~-~~~~~~ 234 (688)
.++.+++.+.+.. +..+|++||.++. ..+++.
T Consensus 199 ~i~~lL~~l~~~~-~~til~iTHdl~~~~~~~dr 231 (331)
T PRK15079 199 QVVNLLQQLQREM-GLSLIFIAHDLAVVKHISDR 231 (331)
T ss_pred HHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCE
Confidence 8889999887654 6899999999954 445553
No 206
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.07 E-value=2.8e-10 Score=115.12 Aligned_cols=154 Identities=18% Similarity=0.274 Sum_probs=100.3
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc---c-ccCceEEEEcCCchhhhccHHHHHHHhhcc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP---D-RRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~---~-~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (688)
+..|+.++|+|+|||||||++..+. +++.++... . ..+.+.++++.+......++.+++......
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 102 (232)
T cd03218 23 VKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEI 102 (232)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHh
Confidence 5689999999999999999987432 122111110 0 112456677766555556777776532110
Q ss_pred c-c-----ccee-ceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhc
Q 005605 143 T-I-----GEEV-GYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKN 213 (688)
Q Consensus 143 ~-~-----~~~v-g~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~ 213 (688)
. . ...+ .+...+.-....+..+..+|+|+.+++.++++++.+++++|+|| +++|....+.+..+++++.+.
T Consensus 103 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~ 182 (232)
T cd03218 103 RGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDR 182 (232)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC
Confidence 0 0 0000 00000100112355677899999999999999999999999999 777778888888888887653
Q ss_pred CCCcEEEEeccccc-HHHHHc
Q 005605 214 RPDLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 214 ~~~~~vil~SAT~~-~~~~~~ 233 (688)
+..+|+.||.++ ...+++
T Consensus 183 --~~tii~~sH~~~~~~~~~d 201 (232)
T cd03218 183 --GIGVLITDHNVRETLSITD 201 (232)
T ss_pred --CCEEEEEeCCHHHHHHhCC
Confidence 678999999884 455554
No 207
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.07 E-value=2.7e-10 Score=117.86 Aligned_cols=150 Identities=22% Similarity=0.293 Sum_probs=101.1
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc------cccCceEEEEcCCchhhhccHHHHHHHhh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP------DRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~------~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (688)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+......++.+++....
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~ 109 (269)
T PRK11831 30 VPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPL 109 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHH
Confidence 5689999999999999999987432 122111110 01224567777766555567777765321
Q ss_pred cc----c----------ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHH
Q 005605 141 DV----T----------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (688)
Q Consensus 141 ~~----~----------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll 204 (688)
.. . ....+|. ....+..+..+|+|+.+++.++++++.+++++|+|| +++|......+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~gl------~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~ 183 (269)
T PRK11831 110 REHTQLPAPLLHSTVMMKLEAVGL------RGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLV 183 (269)
T ss_pred HHccCCCHHHHHHHHHHHHHHcCC------hhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH
Confidence 10 0 0111111 112345667899999999999999999999999999 778778888888
Q ss_pred HHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 205 GLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 205 ~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
.+++.+.+.. +..+|+.||.++ ...+++.
T Consensus 184 ~~l~~~~~~~-g~tiiivsH~~~~~~~~~d~ 213 (269)
T PRK11831 184 KLISELNSAL-GVTCVVVSHDVPEVLSIADH 213 (269)
T ss_pred HHHHHHHHhc-CcEEEEEecCHHHHHHhhCE
Confidence 8888876543 678999999874 4455543
No 208
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.07 E-value=3.1e-10 Score=116.38 Aligned_cols=147 Identities=18% Similarity=0.306 Sum_probs=98.8
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhh---cc-
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEM---DV- 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~---~~- 142 (688)
+..|+.++|+|+|||||||++..+. +++.++.. ....+.++++.+......++.+++.... +.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 101 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEG--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVE 101 (255)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCC
Confidence 5689999999999999999987533 11111111 1123456777665555567777765321 10
Q ss_pred ---------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHH
Q 005605 143 ---------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVL 211 (688)
Q Consensus 143 ---------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~ 211 (688)
.+...+|.. ...+..+..+|+|+.+++.++++++.+++++|+|| +++|......+..+++.+.
T Consensus 102 ~~~~~~~~~~~l~~~gl~------~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~ 175 (255)
T PRK11248 102 KMQRLEIAHQMLKKVGLE------GAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLW 175 (255)
T ss_pred HHHHHHHHHHHHHHcCCh------hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 001111110 11245567799999999999999999999999999 7777788888888888875
Q ss_pred hcCCCcEEEEeccccc-HHHHHc
Q 005605 212 KNRPDLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 212 ~~~~~~~vil~SAT~~-~~~~~~ 233 (688)
+.. +..+|+.||.++ ...+++
T Consensus 176 ~~~-g~tviivsH~~~~~~~~~d 197 (255)
T PRK11248 176 QET-GKQVLLITHDIEEAVFMAT 197 (255)
T ss_pred Hhc-CCEEEEEeCCHHHHHHhCC
Confidence 543 678999999885 344554
No 209
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.07 E-value=5e-10 Score=113.97 Aligned_cols=150 Identities=16% Similarity=0.110 Sum_probs=98.5
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhcCccCCC-cc-ccCceEEEEcCCchhhhccHHHHHHHhhc---------ccccc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIET-PD-RRRKMMIACTQPRRVAAMSVSRRVAEEMD---------VTIGE 146 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~-~~-~~~~~~i~~t~p~~~~~~~v~~~v~~~~~---------~~~~~ 146 (688)
+..|+.++|+|+|||||||++..+.-....... .. ....+.++++.+......++.+.+..... ..+..
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~ 101 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAK 101 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHH
Confidence 568999999999999999998854321110000 00 01134555655544444566666542211 00111
Q ss_pred eeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEecc
Q 005605 147 EVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSA 224 (688)
Q Consensus 147 ~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SA 224 (688)
.+|.. ...+..+..+|+|+++++.++++++.+++++|+|| +++|......+..+++++.+.. +..+|+.||
T Consensus 102 ~l~l~------~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiiivsH 174 (246)
T cd03237 102 PLQIE------QILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENN-EKTAFVVEH 174 (246)
T ss_pred HcCCH------HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeC
Confidence 11111 12345677899999999999999999999999999 7788888888888888886643 678999999
Q ss_pred ccc-HHHHHch
Q 005605 225 TLE-AEKFQGY 234 (688)
Q Consensus 225 T~~-~~~~~~~ 234 (688)
.++ +..+++.
T Consensus 175 d~~~~~~~~d~ 185 (246)
T cd03237 175 DIIMIDYLADR 185 (246)
T ss_pred CHHHHHHhCCE
Confidence 985 3445543
No 210
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.07 E-value=2.7e-10 Score=115.56 Aligned_cols=144 Identities=17% Similarity=0.320 Sum_probs=97.3
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC--ccccCceEEEEcCCchhhhccHHHHHHHhhcc--
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV-- 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~-- 142 (688)
+..|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++.+......++.+++......
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~ 103 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHG 103 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcC
Confidence 5689999999999999999987533 11111111 01112455666666554556777766432110
Q ss_pred -----------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHH
Q 005605 143 -----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (688)
Q Consensus 143 -----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~ 209 (688)
.+...+|.. ...+..+..+|+|+.+++.++++++.+++++|+|| ++.|....+.+..++++
T Consensus 104 ~~~~~~~~~~~~~l~~~gl~------~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 177 (236)
T TIGR03864 104 LSRAEARERIAALLARLGLA------ERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRA 177 (236)
T ss_pred CCHHHHHHHHHHHHHHcCCh------hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHH
Confidence 001111111 12345677899999999999999999999999999 67777888888898888
Q ss_pred HHhcCCCcEEEEecccccH
Q 005605 210 VLKNRPDLKLVVMSATLEA 228 (688)
Q Consensus 210 i~~~~~~~~vil~SAT~~~ 228 (688)
+.+.. +..+|+.||.++.
T Consensus 178 ~~~~~-~~tiii~sH~~~~ 195 (236)
T TIGR03864 178 LCRDQ-GLSVLWATHLVDE 195 (236)
T ss_pred HHHhC-CCEEEEEecChhh
Confidence 76543 6789999998854
No 211
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.06 E-value=2.9e-10 Score=114.75 Aligned_cols=154 Identities=23% Similarity=0.300 Sum_probs=99.7
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhc---cc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMD---VT 143 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~---~~ 143 (688)
+.+|+.++|+|+|||||||++..+. +++.++... .....++++.+......++.+++..... ..
T Consensus 8 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~--~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~ 85 (230)
T TIGR01184 8 IQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEP--GPDRMVVFQNYSLLPWLTVRENIALAVDRVLPD 85 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC--ChhheEEecCcccCCCCCHHHHHHHHHHhcccC
Confidence 5689999999999999999987532 111111110 0112466766655555677777654211 00
Q ss_pred cc-----ceeceee-eecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCC
Q 005605 144 IG-----EEVGYSI-RFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRP 215 (688)
Q Consensus 144 ~~-----~~vg~~~-~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~ 215 (688)
.. ..+.... .++-....+..+..+|+|+.+++.+++.++.+++++|+|| ++.|......+..+++++.+..
T Consensus 86 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~- 164 (230)
T TIGR01184 86 LSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEH- 164 (230)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc-
Confidence 00 0000000 0000112345667899999999999999999999999999 7888888888888888876543
Q ss_pred CcEEEEeccccc-HHHHHch
Q 005605 216 DLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 216 ~~~vil~SAT~~-~~~~~~~ 234 (688)
+..+|+.||.++ ...+++.
T Consensus 165 ~~tii~~sH~~~~~~~~~d~ 184 (230)
T TIGR01184 165 RVTVLMVTHDVDEALLLSDR 184 (230)
T ss_pred CCEEEEEeCCHHHHHHhcCE
Confidence 678999999985 3555553
No 212
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.06 E-value=3.5e-10 Score=114.45 Aligned_cols=156 Identities=19% Similarity=0.306 Sum_probs=101.4
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc-cccCceEEEEcCCchhhhccHHHHHHHhhccccc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP-DRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIG 145 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~-~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~ 145 (688)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++++......++.+++.........
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 101 (232)
T PRK10771 22 VERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLK 101 (232)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccccC
Confidence 6789999999999999999987432 122111110 0123466777777655556777777532110000
Q ss_pred -c-----eec-eeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCC
Q 005605 146 -E-----EVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPD 216 (688)
Q Consensus 146 -~-----~vg-~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~ 216 (688)
. .+. +...+.-....+..+..+|+|+.+++.++++++.+++++|+|| +++|......+..+++.+.+.. +
T Consensus 102 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~-~ 180 (232)
T PRK10771 102 LNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQER-Q 180 (232)
T ss_pred CCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-C
Confidence 0 000 0000000112355667899999999999999999999999999 6777777778888888876543 5
Q ss_pred cEEEEeccccc-HHHHHch
Q 005605 217 LKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 217 ~~vil~SAT~~-~~~~~~~ 234 (688)
..+|+.||.++ ...+++.
T Consensus 181 ~tiii~sH~~~~~~~~~d~ 199 (232)
T PRK10771 181 LTLLMVSHSLEDAARIAPR 199 (232)
T ss_pred CEEEEEECCHHHHHHhCCE
Confidence 78999999985 3455543
No 213
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.06 E-value=1.6e-09 Score=105.70 Aligned_cols=168 Identities=26% Similarity=0.229 Sum_probs=102.6
Q ss_pred hcCCCChHHHHHHHHHHhcC-CEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhh
Q 005605 62 RKSLPVWQQKEEFLQVLKAN-QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (688)
Q Consensus 62 ~~~lp~~~~q~~ii~~i~~g-~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (688)
.+..++.+.|.++++.+..+ +.+++.|+||||||+.+..+++....... ...+++..|+...+.+..+++....
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-----~~~~l~~~p~~~~~~~~~~~~~~~~ 78 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK-----GKRVLVLVPTRELAEQWAEELKKLG 78 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC-----CCcEEEEeCCHHHHHHHHHHHHHHh
Confidence 45667899999999999988 99999999999999988877776542111 1124444565555555666655443
Q ss_pred ccc---ccceeceeeeec---ccccccccccccCHHHHHHHHhccc-cccCCcEEeecccCcChh--hHHHHHHHHHHHH
Q 005605 141 DVT---IGEEVGYSIRFE---DCSSARTVLKYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTL--ATDVLFGLLKEVL 211 (688)
Q Consensus 141 ~~~---~~~~vg~~~~~~---~~~~~~~~i~~lT~G~l~~~~~~~~-ll~~~~~lIlDEaher~~--~~d~ll~~l~~i~ 211 (688)
... .....+.....+ ........+.+.|.+.+.+...... ....++++|+||+|.-.. ..+.+..++..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~- 157 (201)
T smart00487 79 PSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL- 157 (201)
T ss_pred ccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC-
Confidence 211 111111110000 0111112777889999988876655 477889999999996331 122233333322
Q ss_pred hcCCCcEEEEecccc--cHHHHHchhcC
Q 005605 212 KNRPDLKLVVMSATL--EAEKFQGYFYG 237 (688)
Q Consensus 212 ~~~~~~~vil~SAT~--~~~~~~~~~~~ 237 (688)
.+..+++++|||. +.......+..
T Consensus 158 --~~~~~~v~~saT~~~~~~~~~~~~~~ 183 (201)
T smart00487 158 --PKNVQLLLLSATPPEEIENLLELFLN 183 (201)
T ss_pred --CccceEEEEecCCchhHHHHHHHhcC
Confidence 3477899999999 34444444433
No 214
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.06 E-value=2.5e-10 Score=119.08 Aligned_cols=152 Identities=24% Similarity=0.348 Sum_probs=103.1
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc-----cccCceEEEEcCCc-hhhhccHHHHHHHhh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP-----DRRRKMMIACTQPR-RVAAMSVSRRVAEEM 140 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~-----~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~ 140 (688)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.+++++|. .....++.+++....
T Consensus 30 i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~ 109 (287)
T PRK13637 30 IEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGP 109 (287)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHH
Confidence 5789999999999999999987432 222222110 11235667787763 223457777775321
Q ss_pred ---cc----------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHH
Q 005605 141 ---DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (688)
Q Consensus 141 ---~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ 205 (688)
+. .+...+|.. .....+..+..+|+|+.+|+.++++++.+++++|+|| +++|......+.+
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~gL~----~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~ 185 (287)
T PRK13637 110 INLGLSEEEIENRVKRAMNIVGLD----YEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILN 185 (287)
T ss_pred HHCCCCHHHHHHHHHHHHHHcCCC----chhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHH
Confidence 10 111112211 0012356677899999999999999999999999999 7788888888999
Q ss_pred HHHHHHhcCCCcEEEEecccccH-HHHHch
Q 005605 206 LLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (688)
Q Consensus 206 ~l~~i~~~~~~~~vil~SAT~~~-~~~~~~ 234 (688)
+++++.+.. +..+|+.||.++. ..+++.
T Consensus 186 ~l~~l~~~~-g~tvi~vtHd~~~~~~~~dr 214 (287)
T PRK13637 186 KIKELHKEY-NMTIILVSHSMEDVAKLADR 214 (287)
T ss_pred HHHHHHHhc-CCEEEEEeCCHHHHHHhCCE
Confidence 999886643 6789999999853 455544
No 215
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.05 E-value=2.2e-10 Score=120.44 Aligned_cols=155 Identities=15% Similarity=0.182 Sum_probs=103.6
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc--cccCceEEEEcCCchhhhccHHHHHHHhh---c
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP--DRRRKMMIACTQPRRVAAMSVSRRVAEEM---D 141 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~--~~~~~~~i~~t~p~~~~~~~v~~~v~~~~---~ 141 (688)
+.+|+.+++.|||||||||++..+. +++.+.... ...+.+.++++.+.....+++.+++.... +
T Consensus 25 i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~ 104 (301)
T TIGR03522 25 AQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG 104 (301)
T ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC
Confidence 5689999999999999999987433 112111110 11234667777776666677887775321 1
Q ss_pred ccc---cceeceee-eecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCC
Q 005605 142 VTI---GEEVGYSI-RFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRP 215 (688)
Q Consensus 142 ~~~---~~~vg~~~-~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~ 215 (688)
... ...+.... .++-....+..+..+|+|+.+++.++++++.+++++|||| .++|......+..+++.+. .
T Consensus 105 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~-~-- 181 (301)
T TIGR03522 105 MKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG-K-- 181 (301)
T ss_pred CCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc-C--
Confidence 100 00010000 0010112356677899999999999999999999999999 7788888888888888873 2
Q ss_pred CcEEEEeccccc-HHHHHchh
Q 005605 216 DLKLVVMSATLE-AEKFQGYF 235 (688)
Q Consensus 216 ~~~vil~SAT~~-~~~~~~~~ 235 (688)
+..+|+.||.++ .+.++++.
T Consensus 182 ~~tiii~sH~l~~~~~~~d~i 202 (301)
T TIGR03522 182 DKTIILSTHIMQEVEAICDRV 202 (301)
T ss_pred CCEEEEEcCCHHHHHHhCCEE
Confidence 578999999995 67777654
No 216
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.05 E-value=1.4e-08 Score=117.70 Aligned_cols=104 Identities=16% Similarity=0.113 Sum_probs=68.2
Q ss_pred EEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCC-------CCCC----------CCC--C
Q 005605 282 ILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPA-------PPPS----------KEG--G 342 (688)
Q Consensus 282 iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~-------~~g~----------~~~--~ 342 (688)
-||=+++.+.+-.++..|..... .....+.+..+||.-+...|..+.+.. .+.. ... .
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~---~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~ 835 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLA---EEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPA 835 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhcc---ccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccc
Confidence 46777777777777777765432 222457889999998776665533221 0000 000 0
Q ss_pred CCceEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCCCC
Q 005605 343 PPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQP 409 (688)
Q Consensus 343 ~~~~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~ 409 (688)
.....|+|||.|.|.|+|++-=-.+.+ |.+..+.+||+||.-|.+.
T Consensus 836 ~~~~~i~v~Tqv~E~g~D~dfd~~~~~---------------------~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 836 LNHLFIVLATPVEEVGRDHDYDWAIAD---------------------PSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred cCCCeEEEEeeeEEEEecccCCeeeec---------------------cCcHHHHHHHhhccccccc
Confidence 114689999999999999863333334 8899999999999988753
No 217
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.05 E-value=3.6e-10 Score=119.76 Aligned_cols=151 Identities=21% Similarity=0.286 Sum_probs=101.5
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc------cccCceEEEEcCCc--hhhhccHHHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP------DRRRKMMIACTQPR--RVAAMSVSRRVAE 138 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~------~~~~~~~i~~t~p~--~~~~~~v~~~v~~ 138 (688)
+..|+.++|+|++||||||++..+. +++.++... ...+.+.++++.|. ....+++.+.+..
T Consensus 38 i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~ 117 (327)
T PRK11308 38 LERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEE 117 (327)
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHH
Confidence 5789999999999999999887432 222222110 01235678888773 2233455444432
Q ss_pred hhc--------------ccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHH
Q 005605 139 EMD--------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (688)
Q Consensus 139 ~~~--------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ 202 (688)
... ..+...+|.. ....+..+..+|+|+.+|+.++++++.++++||+|| .++|......
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~l~~~gL~-----~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~ 192 (327)
T PRK11308 118 PLLINTSLSAAERREKALAMMAKVGLR-----PEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQ 192 (327)
T ss_pred HHHHccCCCHHHHHHHHHHHHHHCCCC-----hHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHH
Confidence 110 1111222221 012355677899999999999999999999999999 6777777888
Q ss_pred HHHHHHHHHhcCCCcEEEEecccccH-HHHHch
Q 005605 203 LFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (688)
Q Consensus 203 ll~~l~~i~~~~~~~~vil~SAT~~~-~~~~~~ 234 (688)
++++++++.+.. +..+|+.||.++. ..++++
T Consensus 193 i~~lL~~l~~~~-g~til~iTHdl~~~~~~adr 224 (327)
T PRK11308 193 VLNLMMDLQQEL-GLSYVFISHDLSVVEHIADE 224 (327)
T ss_pred HHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCE
Confidence 899998887654 6799999999964 456654
No 218
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.04 E-value=3.3e-10 Score=117.47 Aligned_cols=149 Identities=20% Similarity=0.213 Sum_probs=101.7
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc---cccCceEEEEcCCc-hhhhccHHHHHHHhhc-
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP---DRRRKMMIACTQPR-RVAAMSVSRRVAEEMD- 141 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~---~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~~- 141 (688)
+.+|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.|. .....++.+++.....
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~ 107 (274)
T PRK13647 28 IPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVN 107 (274)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHH
Confidence 5789999999999999999987433 222211110 11234667777763 3344577777753211
Q ss_pred --c----------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHH
Q 005605 142 --V----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (688)
Q Consensus 142 --~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l 207 (688)
. .+...+|.. ...+..+..+|+|+.+++.++++++.+++++|+|| +++|......++.++
T Consensus 108 ~~~~~~~~~~~~~~~l~~~~L~------~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l 181 (274)
T PRK13647 108 MGLDKDEVERRVEEALKAVRMW------DFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEIL 181 (274)
T ss_pred cCCCHHHHHHHHHHHHHHCCCH------HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHH
Confidence 0 001111111 12345677899999999999999999999999999 778888888899999
Q ss_pred HHHHhcCCCcEEEEecccccH-HHHHch
Q 005605 208 KEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (688)
Q Consensus 208 ~~i~~~~~~~~vil~SAT~~~-~~~~~~ 234 (688)
+++.+. +..+|+.||.++. ..+++.
T Consensus 182 ~~~~~~--g~tili~tH~~~~~~~~~d~ 207 (274)
T PRK13647 182 DRLHNQ--GKTVIVATHDVDLAAEWADQ 207 (274)
T ss_pred HHHHHC--CCEEEEEeCCHHHHHHhCCE
Confidence 988653 6799999999863 455554
No 219
>PRK10908 cell division protein FtsE; Provisional
Probab=99.04 E-value=3.7e-10 Score=113.45 Aligned_cols=154 Identities=16% Similarity=0.237 Sum_probs=99.2
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc---c---ccCceEEEEcCCchhhhccHHHHHHHhh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP---D---RRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~---~---~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (688)
+.+|+.++|+|+|||||||++..+. +++.++... . ..+.+.++++.+......++.+++....
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 104 (222)
T PRK10908 25 MRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPL 104 (222)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHH
Confidence 5689999999999999999987432 112111110 0 1234566777665555567777765321
Q ss_pred ---cccc---cceec-eeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHH
Q 005605 141 ---DVTI---GEEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVL 211 (688)
Q Consensus 141 ---~~~~---~~~vg-~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~ 211 (688)
+... ...+. +...+.-....+..+..+|+|+.+++.++++++.+++++|+|| +++|....+.+..+++.+.
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 184 (222)
T PRK10908 105 IIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFN 184 (222)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH
Confidence 1000 00000 0000000112345667899999999999999999999999999 7777777788888888875
Q ss_pred hcCCCcEEEEeccccc-HHHHHc
Q 005605 212 KNRPDLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 212 ~~~~~~~vil~SAT~~-~~~~~~ 233 (688)
+. +..+|+.||.++ ...+++
T Consensus 185 ~~--~~tiii~sH~~~~~~~~~d 205 (222)
T PRK10908 185 RV--GVTVLMATHDIGLISRRSY 205 (222)
T ss_pred HC--CCEEEEEeCCHHHHHHhCC
Confidence 43 678999999985 344444
No 220
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.04 E-value=2.4e-10 Score=107.63 Aligned_cols=148 Identities=17% Similarity=0.227 Sum_probs=105.8
Q ss_pred HHhcCCEEEEEeCCCCChhcchh-----------HHHhcCccCCC----ccccCceEEEEcCCchhhhccHHHHHHHhhc
Q 005605 77 VLKANQVIILVGETGSGKTTQIP-----------QFVLEGVDIET----PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~-----------~~ll~~~~~~~----~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (688)
.+.+|++|++.||||+||||.|. .+++++.++.+ ...+.++.++|+.+...--++|.+++..-+.
T Consensus 26 ~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE 105 (243)
T COG1137 26 EVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLE 105 (243)
T ss_pred EEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHh
Confidence 36789999999999999999886 46677766654 2234467889999988888888888743221
Q ss_pred ccc--cceecee-------eeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHH
Q 005605 142 VTI--GEEVGYS-------IRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (688)
Q Consensus 142 ~~~--~~~vg~~-------~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i 210 (688)
..- .....-. ..|.-....+..-..+|+|...|+.+++++..+|++++||| |..|+.....+..+++.+
T Consensus 106 ~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L 185 (243)
T COG1137 106 IREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHL 185 (243)
T ss_pred hhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHH
Confidence 110 0000000 00000111233445689999999999999999999999999 888899988888888887
Q ss_pred HhcCCCcEEEEecccc
Q 005605 211 LKNRPDLKLVVMSATL 226 (688)
Q Consensus 211 ~~~~~~~~vil~SAT~ 226 (688)
..+ ++-+++.-|..
T Consensus 186 ~~r--giGvLITDHNV 199 (243)
T COG1137 186 KDR--GIGVLITDHNV 199 (243)
T ss_pred HhC--CceEEEccccH
Confidence 665 78899888876
No 221
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.04 E-value=3.5e-10 Score=115.20 Aligned_cols=154 Identities=21% Similarity=0.352 Sum_probs=104.6
Q ss_pred HhcCCEEEEEeCCCCChhcchhHH----------------HhcCccCCC---c----cccCceEEEEcCCchh--hhccH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQF----------------VLEGVDIET---P----DRRRKMMIACTQPRRV--AAMSV 132 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~----------------ll~~~~~~~---~----~~~~~~~i~~t~p~~~--~~~~v 132 (688)
+.+|+.++|+|++||||||+...+ ++++.++.+ . -..+.+.++++.|... ..+++
T Consensus 28 i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~I 107 (316)
T COG0444 28 LKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTI 107 (316)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhH
Confidence 578999999999999999975522 222222211 0 1234567888887533 23444
Q ss_pred HHHHHHhh---------------cccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCc
Q 005605 133 SRRVAEEM---------------DVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHE 195 (688)
Q Consensus 133 ~~~v~~~~---------------~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--ahe 195 (688)
-+++.+.. .....+.||... .....+..+..+|+|+++|++++-+++.++++||.|| ..+
T Consensus 108 g~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~---~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTAL 184 (316)
T COG0444 108 GDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPD---PERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTAL 184 (316)
T ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCC---HHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchh
Confidence 44443322 112223344321 0112356778899999999999999999999999999 446
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHchh
Q 005605 196 RTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGYF 235 (688)
Q Consensus 196 r~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~~ 235 (688)
|......++++++++.++. +..+|++||++. +..++++.
T Consensus 185 Dvt~QaqIl~Ll~~l~~e~-~~aiilITHDl~vva~~aDri 224 (316)
T COG0444 185 DVTVQAQILDLLKELQREK-GTALILITHDLGVVAEIADRV 224 (316)
T ss_pred hHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcceE
Confidence 6677777999999998855 899999999995 56777653
No 222
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.04 E-value=2.7e-10 Score=112.79 Aligned_cols=142 Identities=18% Similarity=0.224 Sum_probs=94.5
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC--ccccCceEEEEcCCchhhhccHHHHHHHhhcc--
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV-- 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~-- 142 (688)
+.+|+.++|.|+|||||||++..+. +++.++.. ....+.+.+++.++......++.+++......
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~ 103 (204)
T PRK13538 24 LNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG 103 (204)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC
Confidence 6789999999999999999987432 11111110 00122344555555444456777776532211
Q ss_pred --------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHh
Q 005605 143 --------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLK 212 (688)
Q Consensus 143 --------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~ 212 (688)
.....+|.. ...+..+..+|+|+.+++.++++++.+++++|+|| ++.|......+..+++++.+
T Consensus 104 ~~~~~~~~~~l~~~gl~------~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 177 (204)
T PRK13538 104 PGDDEALWEALAQVGLA------GFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAE 177 (204)
T ss_pred ccHHHHHHHHHHHcCCH------HHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 001111111 11345677899999999999999999999999999 67777788888888888754
Q ss_pred cCCCcEEEEeccccc
Q 005605 213 NRPDLKLVVMSATLE 227 (688)
Q Consensus 213 ~~~~~~vil~SAT~~ 227 (688)
. +..+|++||..+
T Consensus 178 ~--~~tiii~sh~~~ 190 (204)
T PRK13538 178 Q--GGMVILTTHQDL 190 (204)
T ss_pred C--CCEEEEEecChh
Confidence 3 568999999863
No 223
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.04 E-value=4.1e-10 Score=114.64 Aligned_cols=152 Identities=21% Similarity=0.284 Sum_probs=100.3
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhc--
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD-- 141 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-- 141 (688)
+..|+.++|+|+|||||||++..+. +++.++.. ......+.++++.+......++.+++.....
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 103 (242)
T cd03295 24 IAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL 103 (242)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc
Confidence 5689999999999999999987432 22211111 0112245567776655555778777753211
Q ss_pred -c----------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHH
Q 005605 142 -V----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (688)
Q Consensus 142 -~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~ 208 (688)
. .+...+|.. .....+..+..+|+|+.+++.++++++.+++++|+|| ++.|....+.+..+++
T Consensus 104 ~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~ 179 (242)
T cd03295 104 KWPKEKIRERADELLALVGLD----PAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFK 179 (242)
T ss_pred CCCHHHHHHHHHHHHHHcCCC----cHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHH
Confidence 0 001111111 0002345567899999999999999999999999999 6677777788888888
Q ss_pred HHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 209 EVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 209 ~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
++.+.. +..+|+.||..+ ...++++
T Consensus 180 ~~~~~~-g~tvii~sH~~~~~~~~~d~ 205 (242)
T cd03295 180 RLQQEL-GKTIVFVTHDIDEAFRLADR 205 (242)
T ss_pred HHHHHc-CCEEEEEecCHHHHHHhCCE
Confidence 876543 568999999885 4555543
No 224
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.04 E-value=5.1e-10 Score=120.25 Aligned_cols=150 Identities=19% Similarity=0.266 Sum_probs=105.7
Q ss_pred HhcCCEEEEEeCCCCChhcchhHH-----------HhcCc----cCCCc--c-----ccCceEEEEcCCchhhhccHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGV----DIETP--D-----RRRKMMIACTQPRRVAAMSVSRR 135 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~-----------ll~~~----~~~~~--~-----~~~~~~i~~t~p~~~~~~~v~~~ 135 (688)
+.+|+.++|+|+|||||||++..+ ++++. ++... . ..+.+.++++.+......++.++
T Consensus 47 i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eN 126 (382)
T TIGR03415 47 IEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEEN 126 (382)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHH
Confidence 568999999999999999998732 23331 11110 0 11357788888777777888888
Q ss_pred HHHhhcc-------------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhH
Q 005605 136 VAEEMDV-------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (688)
Q Consensus 136 v~~~~~~-------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (688)
+...... .....+|.. ...+..+..+|+|+.+++.++++++.+++++++|| +++|....
T Consensus 127 i~~~~~~~g~~~~~~~~~a~e~le~vgL~------~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r 200 (382)
T TIGR03415 127 VAFGLEMQGMPEAERRKRVDEQLELVGLA------QWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIR 200 (382)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCc------hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHH
Confidence 8643210 111222221 12345667899999999999999999999999999 67788888
Q ss_pred HHHHHHHHHHHhcCCCcEEEEecccccH-HHHHch
Q 005605 201 DVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (688)
Q Consensus 201 d~ll~~l~~i~~~~~~~~vil~SAT~~~-~~~~~~ 234 (688)
..+.+.+.++.+.. +..+|+.||.++. ..+++.
T Consensus 201 ~~l~~~L~~l~~~~-~~TII~iTHdl~e~~~l~Dr 234 (382)
T TIGR03415 201 TQLQDELLELQAKL-NKTIIFVSHDLDEALKIGNR 234 (382)
T ss_pred HHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCE
Confidence 88888888886643 6789999999863 455543
No 225
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.04 E-value=3.5e-10 Score=118.04 Aligned_cols=151 Identities=19% Similarity=0.317 Sum_probs=101.2
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc-------cccCceEEEEcCCc-hhhhccHHHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP-------DRRRKMMIACTQPR-RVAAMSVSRRVAE 138 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~-------~~~~~~~i~~t~p~-~~~~~~v~~~v~~ 138 (688)
+.+|+.++|+|+|||||||++..+. +++.++... ...+.+.+++++|. .....++.+++..
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~ 109 (286)
T PRK13646 30 FEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIF 109 (286)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhHHHHHHh
Confidence 5789999999999999999987433 222222110 11235667777763 2222366666643
Q ss_pred hh---cc----------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHH
Q 005605 139 EM---DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (688)
Q Consensus 139 ~~---~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~l 203 (688)
.. +. .....+|+. ....++.+..+|+|+.+++.++++++.+++++|+|| +++|......+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~gL~-----~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l 184 (286)
T PRK13646 110 GPKNFKMNLDEVKNYAHRLLMDLGFS-----RDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQV 184 (286)
T ss_pred hHHHcCCCHHHHHHHHHHHHHHcCCC-----hhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH
Confidence 21 10 011112221 011345677899999999999999999999999999 77788888889
Q ss_pred HHHHHHHHhcCCCcEEEEecccccH-HHHHch
Q 005605 204 FGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (688)
Q Consensus 204 l~~l~~i~~~~~~~~vil~SAT~~~-~~~~~~ 234 (688)
..+++++.+.. +.++|++||.++. ..++++
T Consensus 185 ~~~l~~l~~~~-g~tvl~vtH~~~~~~~~~dr 215 (286)
T PRK13646 185 MRLLKSLQTDE-NKTIILVSHDMNEVARYADE 215 (286)
T ss_pred HHHHHHHHHhC-CCEEEEEecCHHHHHHhCCE
Confidence 99998886543 6899999999863 455544
No 226
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.04 E-value=4.6e-10 Score=115.26 Aligned_cols=155 Identities=18% Similarity=0.255 Sum_probs=100.0
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc---c-ccCceEEEEcCCchhhhccHHHHHHHhhcc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP---D-RRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~---~-~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (688)
+..|+.++|+|+|||||||++..+. +++.++... . ...++.++++++......++.+++......
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~ 107 (255)
T PRK11300 28 VREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQ 107 (255)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhc
Confidence 5689999999999999999987432 222111110 0 112345567777666667887776542100
Q ss_pred --------cc------c-------ceec-eeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChh
Q 005605 143 --------TI------G-------EEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTL 198 (688)
Q Consensus 143 --------~~------~-------~~vg-~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~ 198 (688)
.. . ..+. +...+.-....+..+..+|+|+.+++.++++++.+++++|+|| .++|..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~ 187 (255)
T PRK11300 108 QLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPK 187 (255)
T ss_pred cccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHH
Confidence 00 0 0000 0000000012345667799999999999999999999999999 777778
Q ss_pred hHHHHHHHHHHHHhcCCCcEEEEecccccH-HHHHc
Q 005605 199 ATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (688)
Q Consensus 199 ~~d~ll~~l~~i~~~~~~~~vil~SAT~~~-~~~~~ 233 (688)
....+.+++.++.+.. +..+|+.||.++. ..+++
T Consensus 188 ~~~~l~~~L~~~~~~~-~~tii~~sH~~~~~~~~~d 222 (255)
T PRK11300 188 ETKELDELIAELRNEH-NVTVLLIEHDMKLVMGISD 222 (255)
T ss_pred HHHHHHHHHHHHHhhc-CCEEEEEeCCHHHHHHhCC
Confidence 8888888888876543 6789999998853 45554
No 227
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.03 E-value=4.4e-10 Score=116.79 Aligned_cols=144 Identities=19% Similarity=0.290 Sum_probs=99.0
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc---cccCceEEEEcCCc-hhhhccHHHHHHHhhcc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP---DRRRKMMIACTQPR-RVAAMSVSRRVAEEMDV 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~---~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~~~ 142 (688)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++++. .....++.+++......
T Consensus 30 i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~ 109 (279)
T PRK13635 30 VYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLEN 109 (279)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhh
Confidence 5789999999999999999987432 222222110 11234667777763 34445777777532110
Q ss_pred -------------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHH
Q 005605 143 -------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (688)
Q Consensus 143 -------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l 207 (688)
.+...+|. ....+..+..+|+|+.+++.++++++.++++||+|| +++|......+..++
T Consensus 110 ~~~~~~~~~~~~~~~l~~~gL------~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l 183 (279)
T PRK13635 110 IGVPREEMVERVDQALRQVGM------EDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETV 183 (279)
T ss_pred CCCCHHHHHHHHHHHHHHcCC------hhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 00111111 112345677899999999999999999999999999 777788888888988
Q ss_pred HHHHhcCCCcEEEEecccccH
Q 005605 208 KEVLKNRPDLKLVVMSATLEA 228 (688)
Q Consensus 208 ~~i~~~~~~~~vil~SAT~~~ 228 (688)
+++.+.. +..+|+.||.++.
T Consensus 184 ~~l~~~~-~~tilivsH~~~~ 203 (279)
T PRK13635 184 RQLKEQK-GITVLSITHDLDE 203 (279)
T ss_pred HHHHHcC-CCEEEEEecCHHH
Confidence 8886643 6789999999864
No 228
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.03 E-value=5.2e-10 Score=114.52 Aligned_cols=149 Identities=19% Similarity=0.293 Sum_probs=99.0
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc-----------cccCceEEEEcCCchhhhccHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP-----------DRRRKMMIACTQPRRVAAMSVSRR 135 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~-----------~~~~~~~i~~t~p~~~~~~~v~~~ 135 (688)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+......++.++
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 105 (250)
T PRK11264 26 VKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLEN 105 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHH
Confidence 5789999999999999999987432 111111100 012345677776655555677777
Q ss_pred HHHhh----cc----------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhh
Q 005605 136 VAEEM----DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLA 199 (688)
Q Consensus 136 v~~~~----~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~ 199 (688)
+.... +. .....+|.. ...+..+..+|+|+.+++.++++++.+++++|+|| +++|...
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~------~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~ 179 (250)
T PRK11264 106 IIEGPVIVKGEPKEEATARARELLAKVGLA------GKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPEL 179 (250)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCc------chhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 64311 10 001111211 11345667899999999999999999999999999 7777778
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 200 TDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 200 ~d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
...+..+++++.+. +..+|+.||..+ ...+++.
T Consensus 180 ~~~l~~~l~~~~~~--~~tvi~~tH~~~~~~~~~d~ 213 (250)
T PRK11264 180 VGEVLNTIRQLAQE--KRTMVIVTHEMSFARDVADR 213 (250)
T ss_pred HHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhcCE
Confidence 88888888887643 678899999874 3445543
No 229
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.03 E-value=3.4e-10 Score=114.19 Aligned_cols=155 Identities=22% Similarity=0.299 Sum_probs=98.3
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc------cccCceEEEEcCCc--hhhhccHHHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP------DRRRKMMIACTQPR--RVAAMSVSRRVAE 138 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~------~~~~~~~i~~t~p~--~~~~~~v~~~v~~ 138 (688)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++++. .....++.+++..
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~ 107 (228)
T cd03257 28 IKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAE 107 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHH
Confidence 5689999999999999999987432 222211110 11234566676662 2334677776643
Q ss_pred hhc---cccc----cee--ceeeeeccc-ccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHH
Q 005605 139 EMD---VTIG----EEV--GYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL 206 (688)
Q Consensus 139 ~~~---~~~~----~~v--g~~~~~~~~-~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~ 206 (688)
... .... ... .....+.-. ...+..+..+|+|+.+++.++++++.+++++++|| +++|....+.+..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~ 187 (228)
T cd03257 108 PLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDL 187 (228)
T ss_pred HHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHH
Confidence 210 0000 000 000011100 11345667799999999999999999999999999 77777888888888
Q ss_pred HHHHHhcCCCcEEEEecccccH-HHHHc
Q 005605 207 LKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (688)
Q Consensus 207 l~~i~~~~~~~~vil~SAT~~~-~~~~~ 233 (688)
++++.+.. +..+|+.||.++. ..+++
T Consensus 188 l~~~~~~~-~~tii~~sH~~~~~~~~~d 214 (228)
T cd03257 188 LKKLQEEL-GLTLLFITHDLGVVAKIAD 214 (228)
T ss_pred HHHHHHHc-CCEEEEEeCCHHHHHHhcC
Confidence 88876542 5789999998853 33444
No 230
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.03 E-value=3.9e-10 Score=114.82 Aligned_cols=149 Identities=18% Similarity=0.308 Sum_probs=99.2
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCC-----C----ccccCceEEEEcCCchhhhccHHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIE-----T----PDRRRKMMIACTQPRRVAAMSVSRRVA 137 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~-----~----~~~~~~~~i~~t~p~~~~~~~v~~~v~ 137 (688)
+.+|+.++|.|+|||||||++..+. +++.++. . ....+.+.++++.+......++.+++.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~ 104 (242)
T PRK11124 25 CPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLI 104 (242)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHH
Confidence 5689999999999999999987432 2222110 0 001234567777766555567777764
Q ss_pred Hh----hccc----------ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHH
Q 005605 138 EE----MDVT----------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (688)
Q Consensus 138 ~~----~~~~----------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d 201 (688)
.. .+.. ....+|. ....+..+..+|+|+.+++.++++++.+++++|+|| +++|....+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~gl------~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~ 178 (242)
T PRK11124 105 EAPCRVLGLSKDQALARAEKLLERLRL------KPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITA 178 (242)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCC------hhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHH
Confidence 21 0100 0111111 112345667899999999999999999999999999 667777788
Q ss_pred HHHHHHHHHHhcCCCcEEEEecccccH-HHHHch
Q 005605 202 VLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (688)
Q Consensus 202 ~ll~~l~~i~~~~~~~~vil~SAT~~~-~~~~~~ 234 (688)
.+..+++++.+. +..+|+.||..+. ..++++
T Consensus 179 ~l~~~l~~~~~~--~~tii~~sh~~~~~~~~~d~ 210 (242)
T PRK11124 179 QIVSIIRELAET--GITQVIVTHEVEVARKTASR 210 (242)
T ss_pred HHHHHHHHHHHc--CCEEEEEeCCHHHHHHhcCE
Confidence 888888887543 6789999998853 344543
No 231
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.03 E-value=5.2e-10 Score=110.44 Aligned_cols=149 Identities=16% Similarity=0.161 Sum_probs=94.1
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC--ccccCceEEEEcCCchhhhccHHHHHHHhhcccc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTI 144 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~ 144 (688)
+.+|+.++|.|++||||||++..+. +++.++.. ....+.+.++++.+......++.+++........
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~ 103 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSP 103 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcCc
Confidence 5689999999999999999987432 11111111 0011234455555444445677777653211000
Q ss_pred c-ceeceeee-ecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEE
Q 005605 145 G-EEVGYSIR-FEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLV 220 (688)
Q Consensus 145 ~-~~vg~~~~-~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vi 220 (688)
. ..+..... +.-....+..+..+|+|+.+++.++++++.+++++|+|| ++.|....+.+..+++++.+. +..+|
T Consensus 104 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~--~~tii 181 (200)
T PRK13540 104 GAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAK--GGAVL 181 (200)
T ss_pred chHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHc--CCEEE
Confidence 0 00000000 000011234556799999999999999999999999999 677777788888888886443 67899
Q ss_pred EecccccH
Q 005605 221 VMSATLEA 228 (688)
Q Consensus 221 l~SAT~~~ 228 (688)
+.||....
T Consensus 182 i~sh~~~~ 189 (200)
T PRK13540 182 LTSHQDLP 189 (200)
T ss_pred EEeCCchh
Confidence 99998743
No 232
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.03 E-value=4.8e-10 Score=117.18 Aligned_cols=151 Identities=22% Similarity=0.298 Sum_probs=101.6
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC-------ccccCceEEEEcCCc-hhhhccHHHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-------PDRRRKMMIACTQPR-RVAAMSVSRRVAE 138 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-------~~~~~~~~i~~t~p~-~~~~~~v~~~v~~ 138 (688)
+..|+.++|+|+|||||||++..+. +++.++.. ....+.+.+++++|. .+...++.+++..
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~ 109 (290)
T PRK13634 30 IPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICF 109 (290)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHH
Confidence 5789999999999999999987433 22222210 011234667777763 2334577777753
Q ss_pred hh---cc----------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHH
Q 005605 139 EM---DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (688)
Q Consensus 139 ~~---~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~l 203 (688)
.. +. .+...+|.. ....+..+..+|+|+.+++.++++++.+++++|+|| +++|......+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~gL~-----~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l 184 (290)
T PRK13634 110 GPMNFGVSEEDAKQKAREMIELVGLP-----EELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEM 184 (290)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCCC-----hhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence 21 10 001112211 011345677899999999999999999999999999 77777888888
Q ss_pred HHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 204 FGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 204 l~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
+.+++.+.+.. +..+|++||.++ +..+++.
T Consensus 185 ~~~L~~l~~~~-g~tviiitHd~~~~~~~~dr 215 (290)
T PRK13634 185 MEMFYKLHKEK-GLTTVLVTHSMEDAARYADQ 215 (290)
T ss_pred HHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCE
Confidence 88888886643 678999999985 3455554
No 233
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.02 E-value=6.7e-10 Score=108.86 Aligned_cols=126 Identities=18% Similarity=0.183 Sum_probs=87.3
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhcCc-cCCC-----------ccccCceEEEEcCCchhhhccHHHHHHHhhccccc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLEGV-DIET-----------PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIG 145 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~-~~~~-----------~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~ 145 (688)
+..|+.++|+|+|||||||++..+.-... .... ....+.+.++++.+......++.+++.....
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~---- 105 (192)
T cd03232 30 VKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSAL---- 105 (192)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHH----
Confidence 56899999999999999999876441100 0000 0001233444544444444566665543210
Q ss_pred ceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEec
Q 005605 146 EEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMS 223 (688)
Q Consensus 146 ~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~S 223 (688)
...+|+|+.+++.++++++.+++++++|| ++.|......+.++++++.+. +..+|+.|
T Consensus 106 ------------------~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~--~~tiiivt 165 (192)
T cd03232 106 ------------------LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADS--GQAILCTI 165 (192)
T ss_pred ------------------HhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHc--CCEEEEEE
Confidence 00699999999999999999999999999 667777777888888887543 67899999
Q ss_pred cccc
Q 005605 224 ATLE 227 (688)
Q Consensus 224 AT~~ 227 (688)
|.++
T Consensus 166 H~~~ 169 (192)
T cd03232 166 HQPS 169 (192)
T ss_pred cCCh
Confidence 9985
No 234
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.02 E-value=6.7e-10 Score=113.11 Aligned_cols=153 Identities=18% Similarity=0.238 Sum_probs=99.1
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc----cccCceEEEEcCCchhhhccHHHHHHHhhcc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP----DRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~----~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (688)
+.+|+.++|.|+|||||||++.... +++.++... ...+.+.++++.+......++.+++......
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~ 104 (242)
T TIGR03411 25 VDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPR 104 (242)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhc
Confidence 5689999999999999999987433 222111110 0112466677776666666777776542110
Q ss_pred cc--------------cceeceee-eecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHH
Q 005605 143 TI--------------GEEVGYSI-RFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (688)
Q Consensus 143 ~~--------------~~~vg~~~-~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ 205 (688)
.. ...+.... .+.-....+..+..+|+|+.+++.++++++.+++++++|| +++|....+.+..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~ 184 (242)
T TIGR03411 105 DKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAE 184 (242)
T ss_pred ccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHH
Confidence 00 00000000 0000112345677899999999999999999999999999 7777788888888
Q ss_pred HHHHHHhcCCCcEEEEeccccc-HHHHHc
Q 005605 206 LLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 206 ~l~~i~~~~~~~~vil~SAT~~-~~~~~~ 233 (688)
+++.+.+ +..+|+.||.++ ...+++
T Consensus 185 ~l~~~~~---~~tii~~sH~~~~~~~~~d 210 (242)
T TIGR03411 185 LLKSLAG---KHSVVVVEHDMEFVRSIAD 210 (242)
T ss_pred HHHHHhc---CCEEEEEECCHHHHHHhCC
Confidence 8888743 468999999885 344544
No 235
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.02 E-value=4e-10 Score=111.87 Aligned_cols=142 Identities=24% Similarity=0.279 Sum_probs=92.8
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHh-----------cCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhc---c-
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVL-----------EGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMD---V- 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll-----------~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~---~- 142 (688)
+.+|+.++|+|+|||||||++..+.- ++.+.........+.+++.++......++.+++..... .
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~ 104 (207)
T PRK13539 25 LAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGE 104 (207)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCc
Confidence 56899999999999999999874321 11111000011223445444443345677766643111 0
Q ss_pred -----cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCC
Q 005605 143 -----TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRP 215 (688)
Q Consensus 143 -----~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~ 215 (688)
.+...+|.. ...+..+..+|+|+.+++.++++++.+++++|+|| ++.|......+.++++++.+.
T Consensus 105 ~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-- 176 (207)
T PRK13539 105 ELDIAAALEAVGLA------PLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQ-- 176 (207)
T ss_pred HHHHHHHHHHcCCH------HHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 011111211 11245566899999999999999999999999999 777778888888888887543
Q ss_pred CcEEEEeccccc
Q 005605 216 DLKLVVMSATLE 227 (688)
Q Consensus 216 ~~~vil~SAT~~ 227 (688)
+..+|+.||..+
T Consensus 177 ~~tiii~sH~~~ 188 (207)
T PRK13539 177 GGIVIAATHIPL 188 (207)
T ss_pred CCEEEEEeCCch
Confidence 678999999874
No 236
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.02 E-value=5.6e-10 Score=113.57 Aligned_cols=148 Identities=18% Similarity=0.305 Sum_probs=98.2
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc-----cccCceEEEEcCCchhhhccHHHHHHHhh-
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP-----DRRRKMMIACTQPRRVAAMSVSRRVAEEM- 140 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~-----~~~~~~~i~~t~p~~~~~~~v~~~v~~~~- 140 (688)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+......++.+++....
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 103 (240)
T PRK09493 24 IDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPL 103 (240)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHH
Confidence 5689999999999999999987433 222211110 01234566777665555567777764321
Q ss_pred ---cc----------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHH
Q 005605 141 ---DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (688)
Q Consensus 141 ---~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ 205 (688)
+. .+...+|. ....+..+..+|+|+.+++.++++++.+++++++|| ++.|......+..
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~gl------~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~ 177 (240)
T PRK09493 104 RVRGASKEEAEKQARELLAKVGL------AERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLK 177 (240)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCC------hHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 00 00111111 111245667799999999999999999999999999 6677777777888
Q ss_pred HHHHHHhcCCCcEEEEecccccH-HHHHc
Q 005605 206 LLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (688)
Q Consensus 206 ~l~~i~~~~~~~~vil~SAT~~~-~~~~~ 233 (688)
+++.+.+. +..+|+.||.++. ..+++
T Consensus 178 ~l~~~~~~--~~tiii~sH~~~~~~~~~d 204 (240)
T PRK09493 178 VMQDLAEE--GMTMVIVTHEIGFAEKVAS 204 (240)
T ss_pred HHHHHHHc--CCEEEEEeCCHHHHHHhCC
Confidence 88887543 6789999998853 34444
No 237
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.01 E-value=4.8e-10 Score=115.73 Aligned_cols=156 Identities=21% Similarity=0.219 Sum_probs=98.9
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhccc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (688)
+..|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++.+......++.+++.......
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 113 (265)
T PRK10575 34 FPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPW 113 (265)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccc
Confidence 5689999999999999999987432 11111110 011224556666654445567777765321100
Q ss_pred c----------cceec-eeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHH
Q 005605 144 I----------GEEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (688)
Q Consensus 144 ~----------~~~vg-~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i 210 (688)
. ...+. ....+.-....+..+..+|+|+.+++.++++++.+++++|+|| +++|......+..+++.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l 193 (265)
T PRK10575 114 HGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRL 193 (265)
T ss_pred cccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 0 00000 0000000011345566799999999999999999999999999 777778888888888887
Q ss_pred HhcCCCcEEEEeccccc-HHHHHch
Q 005605 211 LKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 211 ~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
.+.. +..+|+.||.++ ...+++.
T Consensus 194 ~~~~-~~tiii~sH~~~~i~~~~d~ 217 (265)
T PRK10575 194 SQER-GLTVIAVLHDINMAARYCDY 217 (265)
T ss_pred HHhc-CCEEEEEeCCHHHHHHhCCE
Confidence 6543 678999999985 3445543
No 238
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.01 E-value=1.2e-09 Score=108.09 Aligned_cols=139 Identities=12% Similarity=0.212 Sum_probs=92.9
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhc--------------CccCCC--ccccCceEEEEcCCchhhhccHHHHHHHhhc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLE--------------GVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~--------------~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (688)
+.+|+.++|+|+|||||||++..+.-. +.++.. ....+.+.++++++......++.+++.....
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 109 (202)
T cd03233 30 VKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALR 109 (202)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhh
Confidence 678999999999999999988742211 111110 0112235566666655555677777654321
Q ss_pred ccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEE
Q 005605 142 VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKL 219 (688)
Q Consensus 142 ~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~v 219 (688)
.. .+..+..+|+|+.+++.++++++.+++++|+|| +..|......+..+++++.+.. +..+
T Consensus 110 ~~----------------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~-~~t~ 172 (202)
T cd03233 110 CK----------------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVL-KTTT 172 (202)
T ss_pred hc----------------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhC-CCEE
Confidence 10 334566799999999999999999999999999 6777777888888888876543 4455
Q ss_pred EEec-ccc-cHHHHHc
Q 005605 220 VVMS-ATL-EAEKFQG 233 (688)
Q Consensus 220 il~S-AT~-~~~~~~~ 233 (688)
++++ +.. ....+++
T Consensus 173 ii~~~h~~~~~~~~~d 188 (202)
T cd03233 173 FVSLYQASDEIYDLFD 188 (202)
T ss_pred EEEEcCCHHHHHHhCC
Confidence 5544 433 3444544
No 239
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.01 E-value=2.9e-10 Score=114.10 Aligned_cols=145 Identities=22% Similarity=0.320 Sum_probs=102.7
Q ss_pred HhcCCEEEEEeCCCCChhcchh-----------HHHhcCccCCCc-------cccCceEEEEcCCchhhhccHHHHHHHh
Q 005605 78 LKANQVIILVGETGSGKTTQIP-----------QFVLEGVDIETP-------DRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~-----------~~ll~~~~~~~~-------~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (688)
+.+|++.+|.|-+||||||++. .+++++.++... -.++.+.+++++--.++..+|.++++..
T Consensus 51 v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fG 130 (386)
T COG4175 51 VEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFG 130 (386)
T ss_pred ecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcc
Confidence 6789999999999999999987 344555444331 1123455667666666777888777532
Q ss_pred h-------------cccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeeccc--CcChhhHHHHH
Q 005605 140 M-------------DVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEA--HERTLATDVLF 204 (688)
Q Consensus 140 ~-------------~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEa--her~~~~d~ll 204 (688)
+ .......||.. ...+..+..+|+|+.+|+-+++++..+++++++||+ -+|++-...+.
T Consensus 131 Lev~Gv~~~er~~~a~~~l~~VgL~------~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQ 204 (386)
T COG4175 131 LEVQGVPKAEREERALEALELVGLE------GYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQ 204 (386)
T ss_pred eeecCCCHHHHHHHHHHHHHHcCch------hhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHH
Confidence 2 22333445533 224567888999999999999999999999999994 35666665666
Q ss_pred HHHHHHHhcCCCcEEEEecccccHH
Q 005605 205 GLLKEVLKNRPDLKLVVMSATLEAE 229 (688)
Q Consensus 205 ~~l~~i~~~~~~~~vil~SAT~~~~ 229 (688)
+.|.++.++. +.+++++||+++..
T Consensus 205 deLl~Lq~~l-~KTIvFitHDLdEA 228 (386)
T COG4175 205 DELLELQAKL-KKTIVFITHDLDEA 228 (386)
T ss_pred HHHHHHHHHh-CCeEEEEecCHHHH
Confidence 6666666554 67899999999654
No 240
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.01 E-value=1e-09 Score=107.76 Aligned_cols=132 Identities=14% Similarity=0.178 Sum_probs=87.4
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhcC--ccCCC-----------ccccCceEEEEcCCchhhhccHHHHHHHhhcccc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLEG--VDIET-----------PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTI 144 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~--~~~~~-----------~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~ 144 (688)
+.+|+.++|.|++||||||++..+.-.. ..... ....+.+.++++.+......++.+++.....
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~--- 108 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAK--- 108 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHH---
Confidence 6789999999999999999987543211 10000 0011223344444333333445444432110
Q ss_pred cceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEe
Q 005605 145 GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVM 222 (688)
Q Consensus 145 ~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~ 222 (688)
...+|+|+.+++.++++++.+++++++|| .+.|......+..+++++.+. +..+|++
T Consensus 109 -------------------~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~--~~tiii~ 167 (194)
T cd03213 109 -------------------LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADT--GRTIICS 167 (194)
T ss_pred -------------------hccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC--CCEEEEE
Confidence 01689999999999999999999999999 667777777888888887543 6789999
Q ss_pred ccccc--HHHHHc
Q 005605 223 SATLE--AEKFQG 233 (688)
Q Consensus 223 SAT~~--~~~~~~ 233 (688)
||.++ ...+++
T Consensus 168 sh~~~~~~~~~~d 180 (194)
T cd03213 168 IHQPSSEIFELFD 180 (194)
T ss_pred ecCchHHHHHhcC
Confidence 99874 334444
No 241
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.01 E-value=4.6e-10 Score=108.67 Aligned_cols=62 Identities=26% Similarity=0.366 Sum_probs=52.4
Q ss_pred ccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEecccccH
Q 005605 164 LKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (688)
Q Consensus 164 i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~~ 228 (688)
+..+|+|+.+++.++++++.+++++|+|| ++.|....+.+.++++.+. . +..+|++||..+.
T Consensus 96 ~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~--~-~~tii~~sh~~~~ 159 (178)
T cd03247 96 GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL--K-DKTLIWITHHLTG 159 (178)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc--C-CCEEEEEecCHHH
Confidence 55799999999999999999999999999 6777777777888888763 2 5788999998754
No 242
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.00 E-value=1.9e-09 Score=103.01 Aligned_cols=121 Identities=18% Similarity=0.262 Sum_probs=84.1
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhcCccCCCc----cccCceEEEEcCCchhhhccHHHHHHHhhcccccceeceeee
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETP----DRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIR 153 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~----~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~ 153 (688)
+.+|+.++|+|++||||||++..+.-... .... ...+.+.++++.+. ....++.+++...
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~~~~~i~~~~q~~~-~~~~tv~~nl~~~-------------- 87 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLWP-WGSGRIGMPEGEDLLFLPQRPY-LPLGTLREQLIYP-------------- 87 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCCceEEEECCCCc-cccccHHHHhhcc--------------
Confidence 57899999999999999999875432111 1110 01123445555543 2334555554321
Q ss_pred ecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEecccccH
Q 005605 154 FEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (688)
Q Consensus 154 ~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~~ 228 (688)
....+|+|+.+++.++++++.+++++|+|| ++.|......+.++++++ +..+|+.||..+.
T Consensus 88 ---------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-----~~tiiivsh~~~~ 150 (166)
T cd03223 88 ---------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL-----GITVISVGHRPSL 150 (166)
T ss_pred ---------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh-----CCEEEEEeCChhH
Confidence 235699999999999999999999999999 677777777777777664 4688999999753
No 243
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.00 E-value=6.2e-10 Score=111.88 Aligned_cols=148 Identities=18% Similarity=0.251 Sum_probs=99.4
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHh-----------cCccCCCccccCceEEEEcCCchhhhccHHHHHHHhh---cc-
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVL-----------EGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEM---DV- 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll-----------~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~---~~- 142 (688)
+.+|+.++|.|+|||||||++..+.- ++.++.. ...+.+.++++++......++.+++.... +.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~-~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~ 101 (223)
T TIGR03740 23 VPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTR-KDLHKIGSLIESPPLYENLTARENLKVHTTLLGLP 101 (223)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccc-cccccEEEEcCCCCccccCCHHHHHHHHHHHcCCC
Confidence 56899999999999999999874331 1111110 01134566777766555567777764321 10
Q ss_pred -----cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCC
Q 005605 143 -----TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRP 215 (688)
Q Consensus 143 -----~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~ 215 (688)
.+...+|.. ...+..+..+|+|+.+++.++++++.+++++++|| ++.|....+.+..+++++.+.
T Consensus 102 ~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~-- 173 (223)
T TIGR03740 102 DSRIDEVLNIVDLT------NTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQ-- 173 (223)
T ss_pred HHHHHHHHHHcCCc------HHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHC--
Confidence 001111111 11345566799999999999999999999999999 677777888888888887543
Q ss_pred CcEEEEeccccc-HHHHHch
Q 005605 216 DLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 216 ~~~vil~SAT~~-~~~~~~~ 234 (688)
+..+|+.||..+ ...++++
T Consensus 174 ~~tiii~sH~~~~~~~~~d~ 193 (223)
T TIGR03740 174 GITVILSSHILSEVQQLADH 193 (223)
T ss_pred CCEEEEEcCCHHHHHHhcCE
Confidence 678999999885 3455543
No 244
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.00 E-value=6.4e-10 Score=113.17 Aligned_cols=148 Identities=18% Similarity=0.232 Sum_probs=99.0
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc---c-ccCceEEEEcCCchhhhccHHHHHHHhhcc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP---D-RRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~---~-~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (688)
+..|+.++|+|+|||||||++..+. +++.++... . ..+.+.++++.+......++.+++......
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~ 105 (241)
T PRK10895 26 VNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQI 105 (241)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhc
Confidence 5689999999999999999987433 112111110 0 123466777776555556777776532110
Q ss_pred c--------------ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHH
Q 005605 143 T--------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL 206 (688)
Q Consensus 143 ~--------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~ 206 (688)
. +...+|. ....+..+..+|+|+.+++.++++++.+++++|+|| ++.|......+..+
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~l------~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~ 179 (241)
T PRK10895 106 RDDLSAEQREDRANELMEEFHI------EHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRI 179 (241)
T ss_pred ccccCHHHHHHHHHHHHHHcCC------HHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 0 0011111 011245567899999999999999999999999999 77777778788888
Q ss_pred HHHHHhcCCCcEEEEeccccc-HHHHHc
Q 005605 207 LKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 207 l~~i~~~~~~~~vil~SAT~~-~~~~~~ 233 (688)
++.+.+. +..+|+.||.++ ...+++
T Consensus 180 l~~~~~~--g~tiii~sH~~~~~~~~~d 205 (241)
T PRK10895 180 IEHLRDS--GLGVLITDHNVRETLAVCE 205 (241)
T ss_pred HHHHHhc--CCEEEEEEcCHHHHHHhcC
Confidence 8887543 678999999873 455554
No 245
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.00 E-value=5.1e-10 Score=117.56 Aligned_cols=150 Identities=19% Similarity=0.236 Sum_probs=101.0
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCC--------------------------C-ccccCceEE
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIE--------------------------T-PDRRRKMMI 119 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~--------------------------~-~~~~~~~~i 119 (688)
+.+|+.++|+|+|||||||++..+. +++.+.. . ....+.+.+
T Consensus 30 i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~ 109 (305)
T PRK13651 30 INQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGV 109 (305)
T ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEE
Confidence 5789999999999999999987432 1111110 0 011234667
Q ss_pred EEcCCc-hhhhccHHHHHHHhh---cc----------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCC
Q 005605 120 ACTQPR-RVAAMSVSRRVAEEM---DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERY 185 (688)
Q Consensus 120 ~~t~p~-~~~~~~v~~~v~~~~---~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~ 185 (688)
++++|. .+...++.++++... +. .....+|.. ....+..+..+|+|+++++.+++.++.++
T Consensus 110 v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~-----~~~~~~~~~~LSgGqkqrvalA~aL~~~P 184 (305)
T PRK13651 110 VFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLD-----ESYLQRSPFELSGGQKRRVALAGILAMEP 184 (305)
T ss_pred EeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCC-----hhhhhCChhhCCHHHHHHHHHHHHHHhCC
Confidence 787762 333457777765321 10 111112211 01235667789999999999999999999
Q ss_pred cEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 186 KVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 186 ~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
+++|+|| +++|....+.++++++++.+. +..+|+.||.++ +..+++.
T Consensus 185 ~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~--g~tiiivtHd~~~~~~~adr 234 (305)
T PRK13651 185 DFLVFDEPTAGLDPQGVKEILEIFDNLNKQ--GKTIILVTHDLDNVLEWTKR 234 (305)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeeCHHHHHHhCCE
Confidence 9999999 778888888899999888643 778999999985 4556654
No 246
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.00 E-value=6.7e-10 Score=113.82 Aligned_cols=150 Identities=21% Similarity=0.320 Sum_probs=99.7
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc----------------cccCceEEEEcCCchhhhc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP----------------DRRRKMMIACTQPRRVAAM 130 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~----------------~~~~~~~i~~t~p~~~~~~ 130 (688)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+......
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (252)
T TIGR03005 23 VAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHK 102 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCC
Confidence 5689999999999999999987432 222111100 0123466677766555556
Q ss_pred cHHHHHHHhh----cc----------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cC
Q 005605 131 SVSRRVAEEM----DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AH 194 (688)
Q Consensus 131 ~v~~~v~~~~----~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--ah 194 (688)
++.+++.... +. .....+|.. ...+..+..+|+|+.+++.++++++.+++++|+|| ++
T Consensus 103 tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~ 176 (252)
T TIGR03005 103 TVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLA------DKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSA 176 (252)
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh------hHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 7777765311 00 001111111 11245567799999999999999999999999999 66
Q ss_pred cChhhHHHHHHHHHHHHhcCCCcEEEEecccccH-HHHHch
Q 005605 195 ERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (688)
Q Consensus 195 er~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~~-~~~~~~ 234 (688)
+|......+..+++++.+.. +..+|++||.++. ..+++.
T Consensus 177 LD~~~~~~l~~~l~~~~~~~-~~tiiivsH~~~~~~~~~d~ 216 (252)
T TIGR03005 177 LDPELVGEVLNVIRRLASEH-DLTMLLVTHEMGFAREFADR 216 (252)
T ss_pred CCHHHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHhcCE
Confidence 77777777888888876643 6789999999853 345543
No 247
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.00 E-value=3.1e-08 Score=111.16 Aligned_cols=143 Identities=15% Similarity=0.260 Sum_probs=93.1
Q ss_pred CCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccC
Q 005605 279 SGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETS 358 (688)
Q Consensus 279 ~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~g 358 (688)
.|++|||+.+...++.+.+.+...... ..+-.+..+-|+-.+.++ .++.|.... ..-+|.++.++..||
T Consensus 426 ~~KTIvFa~n~dHAe~i~~~~~~~ype----~~~~~a~~IT~d~~~~q~--~Id~f~~ke-----~~P~IaitvdlL~TG 494 (875)
T COG4096 426 IGKTIVFAKNHDHAERIREALVNEYPE----YNGRYAMKITGDAEQAQA--LIDNFIDKE-----KYPRIAITVDLLTTG 494 (875)
T ss_pred cCceEEEeeCcHHHHHHHHHHHHhCcc----ccCceEEEEeccchhhHH--HHHHHHhcC-----CCCceEEehhhhhcC
Confidence 578999999999999999999886533 122335555555443332 223332210 045899999999999
Q ss_pred cccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCCCC--c------eEEEccc---hhhhcccCCC
Q 005605 359 LTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQP--G------KCFRLYT---EKSFNNDLQP 427 (688)
Q Consensus 359 i~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~--G------~~~~l~t---~~~~~~~l~~ 427 (688)
||+|.|..+|=.-. =-|+.-|.|.+||.=|..+ | .-|.++. --+|-+ +.+
T Consensus 495 iDvpev~nlVF~r~------------------VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~~~~~~~~-~~~ 555 (875)
T COG4096 495 VDVPEVVNLVFDRK------------------VRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFVDNTEYFE-MDP 555 (875)
T ss_pred CCchheeeeeehhh------------------hhhHHHHHHHhcCccccCccccCccccceeEEEEEhhhhhhhhc-cCc
Confidence 99999987662221 3589999999999999843 3 2344433 223333 566
Q ss_pred CCCCcccccCcHHHHHHHHHcCCC
Q 005605 428 QTYPEILRSNLANTVLTLKKLGID 451 (688)
Q Consensus 428 ~~~pei~r~~l~~~~L~l~~~~~~ 451 (688)
...++-.+..++.-++.....+..
T Consensus 556 ~~~e~~~~~~l~~rLF~~~~~~~~ 579 (875)
T COG4096 556 EMREGRVRVSLEQRLFADRLFDLE 579 (875)
T ss_pred ccccccccchHHHHHhhhhhccCc
Confidence 666777777777666655544433
No 248
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.00 E-value=5.2e-10 Score=111.66 Aligned_cols=149 Identities=21% Similarity=0.286 Sum_probs=98.6
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC-------ccccCceEEEEcCCchhhhccHHHHHHHh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-------PDRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-------~~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (688)
+.+ +.++|+|+|||||||++.... +++.++.. ....+.+.++++.+......++.+++...
T Consensus 21 i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~ 99 (214)
T cd03297 21 LNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFG 99 (214)
T ss_pred Ecc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHH
Confidence 567 899999999999999987432 11111110 00122456667666555456777766432
Q ss_pred hcc-----------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHH
Q 005605 140 MDV-----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL 206 (688)
Q Consensus 140 ~~~-----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~ 206 (688)
... .....+|.. ...+..+..+|+|+.+++.++++++.+++++|+|| +++|......+.++
T Consensus 100 ~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 173 (214)
T cd03297 100 LKRKRNREDRISVDELLDLLGLD------HLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPE 173 (214)
T ss_pred HhhCCHHHHHHHHHHHHHHcCCH------hHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 110 011111211 11245667899999999999999999999999999 77777888888898
Q ss_pred HHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 207 LKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 207 l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
++++.+.. +..+|+.||.++ ...+++.
T Consensus 174 l~~~~~~~-~~tiii~sH~~~~~~~~~d~ 201 (214)
T cd03297 174 LKQIKKNL-NIPVIFVTHDLSEAEYLADR 201 (214)
T ss_pred HHHHHHHc-CcEEEEEecCHHHHHHhcCE
Confidence 88886643 568999999985 3455543
No 249
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.00 E-value=9e-10 Score=110.94 Aligned_cols=155 Identities=15% Similarity=0.175 Sum_probs=100.2
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhcCc--------------cCCCccccCceEEEEcCCchhhhccHHHHHHHhhccc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLEGV--------------DIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~--------------~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (688)
+..|+.++++|+|||||||++....-... ++......+.+.++++.+......++.+++.......
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~ 109 (226)
T cd03234 30 VESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILR 109 (226)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhh
Confidence 57899999999999999999874431110 0000011234566676666666668887775321100
Q ss_pred c----cc-----eece-ee-eecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHH
Q 005605 144 I----GE-----EVGY-SI-RFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (688)
Q Consensus 144 ~----~~-----~vg~-~~-~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i 210 (688)
. .. .+.. .. .+......+..+..+|+|+.+++.+++.++.+++++|+|| ++.|......+..+++++
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~ 189 (226)
T cd03234 110 LPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQL 189 (226)
T ss_pred cccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 0 00 0000 00 0000011245567899999999999999999999999999 677777788888888887
Q ss_pred HhcCCCcEEEEecccc--cHHHHHch
Q 005605 211 LKNRPDLKLVVMSATL--EAEKFQGY 234 (688)
Q Consensus 211 ~~~~~~~~vil~SAT~--~~~~~~~~ 234 (688)
.+. +..+|+.||.+ ....++++
T Consensus 190 ~~~--~~tiii~sh~~~~~~~~~~d~ 213 (226)
T cd03234 190 ARR--NRIVILTIHQPRSDLFRLFDR 213 (226)
T ss_pred HHC--CCEEEEEecCCCHHHHHhCCE
Confidence 543 67899999997 35556554
No 250
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.00 E-value=6.9e-10 Score=109.64 Aligned_cols=141 Identities=19% Similarity=0.178 Sum_probs=93.5
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC--ccccCceEEEEcCCchhhhccHHHHHHHhhcc--
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV-- 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~-- 142 (688)
+..|+.++|+|+|||||||++..+. +++.+... ....+.+.++++++......++.+++......
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 102 (201)
T cd03231 23 LAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHS 102 (201)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhccccc
Confidence 6789999999999999999987432 11111110 01122455666655544456777766432110
Q ss_pred -----cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCC
Q 005605 143 -----TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRP 215 (688)
Q Consensus 143 -----~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~ 215 (688)
.....+|.. ...+..+..+|+|+.+++.++++++.+++++|+|| ++.|......+.++++++.+.
T Consensus 103 ~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-- 174 (201)
T cd03231 103 DEQVEEALARVGLN------GFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCAR-- 174 (201)
T ss_pred HHHHHHHHHHcCCh------hhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--
Confidence 011111211 11245567899999999999999999999999999 777777788888888876543
Q ss_pred CcEEEEecccc
Q 005605 216 DLKLVVMSATL 226 (688)
Q Consensus 216 ~~~vil~SAT~ 226 (688)
+..+|+.||..
T Consensus 175 g~tiii~sH~~ 185 (201)
T cd03231 175 GGMVVLTTHQD 185 (201)
T ss_pred CCEEEEEecCc
Confidence 56888899875
No 251
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.00 E-value=4.2e-10 Score=117.53 Aligned_cols=155 Identities=19% Similarity=0.264 Sum_probs=100.6
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC-------ccccCceEEEEcCCc-hhhhccHHHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-------PDRRRKMMIACTQPR-RVAAMSVSRRVAE 138 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-------~~~~~~~~i~~t~p~-~~~~~~v~~~v~~ 138 (688)
+.+|+.++|+|+|||||||++..+. +++.++.. ....+.+.+++++|. .+...++.++++.
T Consensus 29 i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~ 108 (288)
T PRK13643 29 VKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAF 108 (288)
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHHHHHHh
Confidence 5689999999999999999987432 22322210 011234667777763 2223477777653
Q ss_pred hh---ccc---ccceeceeeeeccc--ccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHH
Q 005605 139 EM---DVT---IGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (688)
Q Consensus 139 ~~---~~~---~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~ 208 (688)
.. +.. ....+......-.. ...+..+..+|+|+.+++.+++.++.+++++|||| +++|......+..+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~ 188 (288)
T PRK13643 109 GPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFE 188 (288)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHH
Confidence 21 100 00001000000011 12346677899999999999999999999999999 7777788888888888
Q ss_pred HHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 209 EVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 209 ~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
.+.+. +..+|+.||.++ +..+++.
T Consensus 189 ~l~~~--g~til~vtHd~~~~~~~~dr 213 (288)
T PRK13643 189 SIHQS--GQTVVLVTHLMDDVADYADY 213 (288)
T ss_pred HHHHC--CCEEEEEecCHHHHHHhCCE
Confidence 87653 679999999985 3455554
No 252
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.99 E-value=6.9e-10 Score=111.28 Aligned_cols=147 Identities=19% Similarity=0.297 Sum_probs=97.3
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC--ccccCceEEEEcCCchhhhccHHHHHHHhh---c
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEM---D 141 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~---~ 141 (688)
+..|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++.+......++.+++.... +
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 104 (220)
T cd03263 25 VYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG 104 (220)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC
Confidence 6789999999999999999987433 11111111 011234566777666555667777764321 1
Q ss_pred cc----------ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHH
Q 005605 142 VT----------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (688)
Q Consensus 142 ~~----------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~ 209 (688)
.. +...+|. ....++.+..+|+|+.+++.++++++.+++++|+|| ++.|......+..+++.
T Consensus 105 ~~~~~~~~~~~~~l~~~~l------~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 178 (220)
T cd03263 105 LPKSEIKEEVELLLRVLGL------TDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILE 178 (220)
T ss_pred CCHHHHHHHHHHHHHHcCC------HHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHH
Confidence 00 0011111 011245567899999999999999999999999999 66777777778888887
Q ss_pred HHhcCCCcEEEEeccccc-HHHHHc
Q 005605 210 VLKNRPDLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 210 i~~~~~~~~vil~SAT~~-~~~~~~ 233 (688)
+.+ +..+|+.||.++ ...+++
T Consensus 179 ~~~---~~tii~~sH~~~~~~~~~d 200 (220)
T cd03263 179 VRK---GRSIILTTHSMDEAEALCD 200 (220)
T ss_pred Hhc---CCEEEEEcCCHHHHHHhcC
Confidence 643 468899999885 344554
No 253
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.99 E-value=6.9e-10 Score=109.37 Aligned_cols=141 Identities=20% Similarity=0.230 Sum_probs=92.5
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHh-----------cCccCCCc--cccCceEEEEcCCchhhhccHHHHHHHhhccc-
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVL-----------EGVDIETP--DRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT- 143 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll-----------~~~~~~~~--~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~- 143 (688)
+.+|+.++|+|+|||||||++..+.- ++.+.... ...+.+.++++++......++.+++.......
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 102 (198)
T TIGR01189 23 LNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG 102 (198)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC
Confidence 56899999999999999999874321 11111100 01123455555554444567777765321110
Q ss_pred --------ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhc
Q 005605 144 --------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKN 213 (688)
Q Consensus 144 --------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~ 213 (688)
....+|.. ...+..+..+|+|+.+++.++++++.+++++|+|| ++.|......+..+++++.+.
T Consensus 103 ~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 176 (198)
T TIGR01189 103 GAQRTIEDALAAVGLT------GFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLAR 176 (198)
T ss_pred CcHHHHHHHHHHcCCH------HHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC
Confidence 00111111 11345677899999999999999999999999999 667777777788888877543
Q ss_pred CCCcEEEEecccc
Q 005605 214 RPDLKLVVMSATL 226 (688)
Q Consensus 214 ~~~~~vil~SAT~ 226 (688)
+..+|+.||..
T Consensus 177 --~~tii~~sH~~ 187 (198)
T TIGR01189 177 --GGIVLLTTHQD 187 (198)
T ss_pred --CCEEEEEEccc
Confidence 56889999865
No 254
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.99 E-value=6.6e-10 Score=114.58 Aligned_cols=156 Identities=21% Similarity=0.246 Sum_probs=101.4
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhc--------------CccCCCc--------cccCceEEEEcCCchhhhccHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLE--------------GVDIETP--------DRRRKMMIACTQPRRVAAMSVSRR 135 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~--------------~~~~~~~--------~~~~~~~i~~t~p~~~~~~~v~~~ 135 (688)
+..|+.++|+|+|||||||++..+.-. +.++... ...+.+.++++.+......++.++
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 106 (262)
T PRK09984 27 IHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLEN 106 (262)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHH
Confidence 568999999999999999998744311 1011000 001235677777655555677777
Q ss_pred HHHhhccc--c------------cceec-eeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChh
Q 005605 136 VAEEMDVT--I------------GEEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTL 198 (688)
Q Consensus 136 v~~~~~~~--~------------~~~vg-~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~ 198 (688)
+....... . ...+. +...++-....+..+..+|+|+.+++.++++++.+++++|+|| .++|..
T Consensus 107 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 186 (262)
T PRK09984 107 VLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPE 186 (262)
T ss_pred HHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHH
Confidence 75321000 0 00000 0000000012345667899999999999999999999999999 777778
Q ss_pred hHHHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 199 ATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 199 ~~d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
..+.+..+++++.+.. +..+|++||.++ ...+++.
T Consensus 187 ~~~~l~~~l~~~~~~~-g~tvii~tH~~~~~~~~~d~ 222 (262)
T PRK09984 187 SARIVMDTLRDINQND-GITVVVTLHQVDYALRYCER 222 (262)
T ss_pred HHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCE
Confidence 8888899998886543 678999999986 4566553
No 255
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.99 E-value=5.8e-10 Score=111.82 Aligned_cols=154 Identities=16% Similarity=0.255 Sum_probs=98.4
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc------cccCceEEEEcCCchhhhccHHHHHHHhh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP------DRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~------~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (688)
+.+|+.++|+|++||||||++..+. +++.++... ...+.+.++++.+......++.+++....
T Consensus 28 i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~ 107 (220)
T TIGR02982 28 INPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMAL 107 (220)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHH
Confidence 5789999999999999999887433 122111100 01234566676665544467777664321
Q ss_pred ccc--cc-----ceeceee-eecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHH
Q 005605 141 DVT--IG-----EEVGYSI-RFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (688)
Q Consensus 141 ~~~--~~-----~~vg~~~-~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i 210 (688)
... .. ..+.... ++.-....+..+..+|+|+.+++.+++.++.+++++++|| ++.|......+..+++.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~ 187 (220)
T TIGR02982 108 ELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKL 187 (220)
T ss_pred HhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 100 00 0000000 0000112345567899999999999999999999999999 667777777788888887
Q ss_pred HhcCCCcEEEEecccccHHHHH
Q 005605 211 LKNRPDLKLVVMSATLEAEKFQ 232 (688)
Q Consensus 211 ~~~~~~~~vil~SAT~~~~~~~ 232 (688)
.+.. +..+|+.||.++...++
T Consensus 188 ~~~~-~~tii~~sh~~~~~~~~ 208 (220)
T TIGR02982 188 AREQ-GCTILIVTHDNRILDVA 208 (220)
T ss_pred HHHc-CCEEEEEeCCHHHHhhC
Confidence 6533 68999999998644333
No 256
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.99 E-value=7.3e-10 Score=114.75 Aligned_cols=144 Identities=19% Similarity=0.349 Sum_probs=96.6
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc---cccCceEEEEcCCc-hhhhccHHHHHHHhhc-
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP---DRRRKMMIACTQPR-RVAAMSVSRRVAEEMD- 141 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~---~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~~- 141 (688)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.|. .....++.+++.....
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~ 111 (271)
T PRK13632 32 INEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLEN 111 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHH
Confidence 5689999999999999999987332 222212110 11234566676653 3444677777653211
Q ss_pred --cc----------ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHH
Q 005605 142 --VT----------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (688)
Q Consensus 142 --~~----------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l 207 (688)
.. +...+|. ....+..+..+|+|+.+++.++++++.+++++++|| +++|......++.++
T Consensus 112 ~~~~~~~~~~~~~~~l~~~~l------~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l 185 (271)
T PRK13632 112 KKVPPKKMKDIIDDLAKKVGM------EDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIM 185 (271)
T ss_pred cCCCHHHHHHHHHHHHHHcCC------HHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 00 0011111 112355677899999999999999999999999999 677777788888888
Q ss_pred HHHHhcCCCcEEEEecccccH
Q 005605 208 KEVLKNRPDLKLVVMSATLEA 228 (688)
Q Consensus 208 ~~i~~~~~~~~vil~SAT~~~ 228 (688)
+++.+.. +..+|+.||.++.
T Consensus 186 ~~~~~~~-~~tiii~sH~~~~ 205 (271)
T PRK13632 186 VDLRKTR-KKTLISITHDMDE 205 (271)
T ss_pred HHHHHhc-CcEEEEEEechhH
Confidence 8876542 4688999998854
No 257
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.99 E-value=9.8e-10 Score=113.46 Aligned_cols=151 Identities=22% Similarity=0.358 Sum_probs=99.0
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCcc------ccCceEEEEcCCc--hhhhccHHHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD------RRRKMMIACTQPR--RVAAMSVSRRVAE 138 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~------~~~~~~i~~t~p~--~~~~~~v~~~v~~ 138 (688)
+..|+.++|+|++||||||++..+. +++.++.... ..+.+.++++++. .....++.+++..
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~ 113 (265)
T TIGR02769 34 IEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGE 113 (265)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHH
Confidence 5689999999999999999987332 2222121100 1234667777663 2234566666532
Q ss_pred hhc----c----------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHH
Q 005605 139 EMD----V----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (688)
Q Consensus 139 ~~~----~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ 202 (688)
... . .+...+|.. ....+..+..+|+|+.+++.++++++.+++++++|| +++|....+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~l~~~gl~-----~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~ 188 (265)
T TIGR02769 114 PLRHLTSLDESEQKARIAELLDMVGLR-----SEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAV 188 (265)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCC-----hhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 110 0 001111110 011245667899999999999999999999999999 7777778888
Q ss_pred HHHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 203 LFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 203 ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
+..+++++.+.. +..+|+.||.++ +..+++.
T Consensus 189 l~~~l~~~~~~~-g~tiiivsH~~~~~~~~~d~ 220 (265)
T TIGR02769 189 ILELLRKLQQAF-GTAYLFITHDLRLVQSFCQR 220 (265)
T ss_pred HHHHHHHHHHhc-CcEEEEEeCCHHHHHHHhcE
Confidence 889998887643 578999999985 3445543
No 258
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.99 E-value=7.3e-10 Score=114.87 Aligned_cols=143 Identities=20% Similarity=0.249 Sum_probs=96.9
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC----ccccCceEEEEcCCch-hhhccHHHHHHHhhc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET----PDRRRKMMIACTQPRR-VAAMSVSRRVAEEMD 141 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~----~~~~~~~~i~~t~p~~-~~~~~v~~~v~~~~~ 141 (688)
+..|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++.|.. ....++.+++.....
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~ 104 (274)
T PRK13644 25 IKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPE 104 (274)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHH
Confidence 5789999999999999999987432 22222211 0112345677777642 344577777643211
Q ss_pred c-------------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHH
Q 005605 142 V-------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL 206 (688)
Q Consensus 142 ~-------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~ 206 (688)
. .+...+|.. ...+..+..+|+|+.+++.++++++.+++++++|| +++|......+..+
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~gl~------~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~ 178 (274)
T PRK13644 105 NLCLPPIEIRKRVDRALAEIGLE------KYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLER 178 (274)
T ss_pred HcCCCHHHHHHHHHHHHHHCCCH------HHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 0 001111111 11345677899999999999999999999999999 67777777888888
Q ss_pred HHHHHhcCCCcEEEEecccccH
Q 005605 207 LKEVLKNRPDLKLVVMSATLEA 228 (688)
Q Consensus 207 l~~i~~~~~~~~vil~SAT~~~ 228 (688)
++++... +..+|+.||.++.
T Consensus 179 l~~l~~~--g~til~~tH~~~~ 198 (274)
T PRK13644 179 IKKLHEK--GKTIVYITHNLEE 198 (274)
T ss_pred HHHHHhC--CCEEEEEecCHHH
Confidence 8887543 6789999999864
No 259
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.99 E-value=9.6e-10 Score=113.00 Aligned_cols=148 Identities=19% Similarity=0.255 Sum_probs=99.5
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC----------------ccccCceEEEEcCCchhhhc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET----------------PDRRRKMMIACTQPRRVAAM 130 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~----------------~~~~~~~~i~~t~p~~~~~~ 130 (688)
+..|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++.+......
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 107 (257)
T PRK10619 28 ANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHM 107 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCC
Confidence 5689999999999999999987432 22211110 00123466777776655556
Q ss_pred cHHHHHHHhh----c----------ccccceeceeeeeccccc-ccccccccCHHHHHHHHhccccccCCcEEeecc--c
Q 005605 131 SVSRRVAEEM----D----------VTIGEEVGYSIRFEDCSS-ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--A 193 (688)
Q Consensus 131 ~v~~~v~~~~----~----------~~~~~~vg~~~~~~~~~~-~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--a 193 (688)
++.+++.... + ......+|.. .. .+..+..+|+|+.+++.++++++.+++++|+|| +
T Consensus 108 sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~------~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 181 (257)
T PRK10619 108 TVLENVMEAPIQVLGLSKQEARERAVKYLAKVGID------ERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTS 181 (257)
T ss_pred cHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCC------hhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 7777764211 0 0011112211 11 134567899999999999999999999999999 7
Q ss_pred CcChhhHHHHHHHHHHHHhcCCCcEEEEecccccH-HHHHc
Q 005605 194 HERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (688)
Q Consensus 194 her~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~~-~~~~~ 233 (688)
++|......+.++++.+.+. +..+|+.||..+. ..+++
T Consensus 182 ~LD~~~~~~l~~~l~~l~~~--g~tiiivsH~~~~~~~~~d 220 (257)
T PRK10619 182 ALDPELVGEVLRIMQQLAEE--GKTMVVVTHEMGFARHVSS 220 (257)
T ss_pred cCCHHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhcC
Confidence 77778888888888887543 6889999998753 33443
No 260
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.99 E-value=8.5e-10 Score=111.00 Aligned_cols=144 Identities=17% Similarity=0.209 Sum_probs=95.6
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHh-----------cCccCCCc---cccCceEEEEcCCchhhhccHHHHHHHhhc--
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVL-----------EGVDIETP---DRRRKMMIACTQPRRVAAMSVSRRVAEEMD-- 141 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll-----------~~~~~~~~---~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-- 141 (688)
+.+|+.++|+|+|||||||++..+.- ++.++... ...+.+.++++.+.... .++.+++.....
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~ 108 (225)
T PRK10247 30 LRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIR 108 (225)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhc
Confidence 56899999999999999999874321 11111100 01224556666654443 467666642110
Q ss_pred -c--------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHH
Q 005605 142 -V--------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (688)
Q Consensus 142 -~--------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i 210 (688)
. .....+|.. ....+..+..+|+|+.+++.++++++.+++++|+|| +++|....+.+..+++++
T Consensus 109 ~~~~~~~~~~~~l~~~~l~-----~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 183 (225)
T PRK10247 109 NQQPDPAIFLDDLERFALP-----DTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRY 183 (225)
T ss_pred CCChHHHHHHHHHHHcCCC-----hHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 0 111111210 011345677899999999999999999999999999 777778888888888887
Q ss_pred HhcCCCcEEEEecccccH
Q 005605 211 LKNRPDLKLVVMSATLEA 228 (688)
Q Consensus 211 ~~~~~~~~vil~SAT~~~ 228 (688)
.+.. +..+|++||..+.
T Consensus 184 ~~~~-~~tvii~sh~~~~ 200 (225)
T PRK10247 184 VREQ-NIAVLWVTHDKDE 200 (225)
T ss_pred HHhc-CCEEEEEECChHH
Confidence 6654 5789999999854
No 261
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.99 E-value=9.1e-10 Score=113.18 Aligned_cols=150 Identities=19% Similarity=0.263 Sum_probs=99.5
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhccc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (688)
+.+|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++.+......++.+++.......
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 104 (258)
T PRK13548 25 LRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH 104 (258)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc
Confidence 5689999999999999999987432 11111110 001124556676665445567777764321100
Q ss_pred -------------ccceeceeeeecccccccccccccCHHHHHHHHhccccc------cCCcEEeecc--cCcChhhHHH
Q 005605 144 -------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLL------ERYKVIVLDE--AHERTLATDV 202 (688)
Q Consensus 144 -------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll------~~~~~lIlDE--aher~~~~d~ 202 (688)
....+|. ....+..+..+|+|+.+++.++++++ .+++++++|| +++|......
T Consensus 105 ~~~~~~~~~~~~~~l~~~~l------~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~ 178 (258)
T PRK13548 105 GLSRAEDDALVAAALAQVDL------AHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHH 178 (258)
T ss_pred CCCcHHHHHHHHHHHHHcCC------HhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHH
Confidence 0011111 01234567789999999999999998 5999999999 7788888888
Q ss_pred HHHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 203 LFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 203 ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
+..+++++.+.. +..+|++||.++ ...++++
T Consensus 179 l~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d~ 210 (258)
T PRK13548 179 VLRLARQLAHER-GLAVIVVLHDLNLAARYADR 210 (258)
T ss_pred HHHHHHHHHHhc-CCEEEEEECCHHHHHHhcCE
Confidence 899999886333 678999999985 3445554
No 262
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.98 E-value=9.1e-10 Score=124.42 Aligned_cols=149 Identities=19% Similarity=0.264 Sum_probs=103.0
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCcc----ccCceEEEEcCCchhhhccHHHHHHHhhc-
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD----RRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~----~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (688)
+.+|+.++|+|+|||||||++..+. +++.++.... ....+.++++.+......++.+++.....
T Consensus 34 i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 113 (510)
T PRK15439 34 LHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK 113 (510)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc
Confidence 6799999999999999999987432 1111111100 01245677777665556677777653211
Q ss_pred --------ccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHH
Q 005605 142 --------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVL 211 (688)
Q Consensus 142 --------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~ 211 (688)
..+...+|.. ...+..+..+|+|+.+++.++++++.+++++|+|| +++|......+..+++++.
T Consensus 114 ~~~~~~~~~~~l~~~~l~------~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 187 (510)
T PRK15439 114 RQASMQKMKQLLAALGCQ------LDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELL 187 (510)
T ss_pred chHHHHHHHHHHHHcCCC------ccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 0111222221 12355677899999999999999999999999999 7888888889999999886
Q ss_pred hcCCCcEEEEeccccc-HHHHHch
Q 005605 212 KNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 212 ~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
+. +..+|+.||.++ +..+++.
T Consensus 188 ~~--g~tiiivtHd~~~~~~~~d~ 209 (510)
T PRK15439 188 AQ--GVGIVFISHKLPEIRQLADR 209 (510)
T ss_pred HC--CCEEEEEeCCHHHHHHhCCE
Confidence 53 678999999985 4555543
No 263
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.98 E-value=8.7e-10 Score=117.25 Aligned_cols=153 Identities=19% Similarity=0.306 Sum_probs=100.3
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhc---------------CccCCC--cc-----ccCceEEEEcCCch--hhhccHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLE---------------GVDIET--PD-----RRRKMMIACTQPRR--VAAMSVS 133 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~---------------~~~~~~--~~-----~~~~~~i~~t~p~~--~~~~~v~ 133 (688)
|.+|+.++|+|++||||||++..+.-. +.++.. .. ..+.+.++++.|.. ....++.
T Consensus 30 i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~ 109 (330)
T PRK15093 30 LTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVG 109 (330)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHH
Confidence 578999999999999999988743311 111111 00 01246677877642 2345565
Q ss_pred HHHHHhhc-------------------ccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--
Q 005605 134 RRVAEEMD-------------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE-- 192 (688)
Q Consensus 134 ~~v~~~~~-------------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE-- 192 (688)
+.+..... ..+...+|... .....+..+..+|+|+.+|++++++++.++++||+||
T Consensus 110 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~---~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPt 186 (330)
T PRK15093 110 RQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKD---HKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPT 186 (330)
T ss_pred HHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCC---hHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 55543110 00111122110 0011245677899999999999999999999999999
Q ss_pred cCcChhhHHHHHHHHHHHHhcCCCcEEEEecccccH-HHHHch
Q 005605 193 AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (688)
Q Consensus 193 aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~~-~~~~~~ 234 (688)
..+|......++++++++.+.. +..+|++||.+.. ..+++.
T Consensus 187 s~LD~~~~~~i~~lL~~l~~~~-g~tii~itHdl~~v~~~~dr 228 (330)
T PRK15093 187 NAMEPTTQAQIFRLLTRLNQNN-NTTILLISHDLQMLSQWADK 228 (330)
T ss_pred CcCCHHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCE
Confidence 6777788888999999986644 7899999999853 455654
No 264
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.98 E-value=6.8e-10 Score=112.16 Aligned_cols=155 Identities=16% Similarity=0.215 Sum_probs=99.7
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc---c-ccCceEEEEcCCchhhhccHHHHHHHhhcc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP---D-RRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~---~-~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (688)
+.+|+.++|+|+|||||||++..+. +++.++... . ..+.+.++++.+......++.+++......
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 102 (230)
T TIGR03410 23 VPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAA 102 (230)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHh
Confidence 6789999999999999999987432 111111110 0 123456777776655556777776532110
Q ss_pred ---cccceeceee-eecc-cccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCC
Q 005605 143 ---TIGEEVGYSI-RFED-CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRP 215 (688)
Q Consensus 143 ---~~~~~vg~~~-~~~~-~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~ 215 (688)
.......... .++. ....+..+..+|+|+.+++.++++++.+++++++|| +++|......+..++.++.+..
T Consensus 103 ~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~- 181 (230)
T TIGR03410 103 LPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEG- 181 (230)
T ss_pred cCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcC-
Confidence 0000000000 0000 012355677899999999999999999999999999 6777777878888888876543
Q ss_pred CcEEEEeccccc-HHHHHc
Q 005605 216 DLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 216 ~~~vil~SAT~~-~~~~~~ 233 (688)
+..+|+.||.++ +..+++
T Consensus 182 ~~tii~~sH~~~~~~~~~d 200 (230)
T TIGR03410 182 GMAILLVEQYLDFARELAD 200 (230)
T ss_pred CcEEEEEeCCHHHHHHhCC
Confidence 578999999985 333444
No 265
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.98 E-value=7.7e-10 Score=112.55 Aligned_cols=150 Identities=24% Similarity=0.364 Sum_probs=97.5
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhcc-
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (688)
+..|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++.+.... .++.+++......
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~ 104 (241)
T PRK14250 26 FEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK 104 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc
Confidence 5689999999999999999987432 11211110 011234556666654443 4666655421100
Q ss_pred --------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHh
Q 005605 143 --------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLK 212 (688)
Q Consensus 143 --------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~ 212 (688)
.+...+|.. ....+..+..+|+|+.+++.++++++.+++++|+|| ++.|......+...++.+.+
T Consensus 105 ~~~~~~~~~~l~~~~l~-----~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 179 (241)
T PRK14250 105 GEKNVDVEYYLSIVGLN-----KEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKN 179 (241)
T ss_pred CcHHHHHHHHHHHcCCC-----HHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 001111110 011245567899999999999999999999999999 77777788888888888765
Q ss_pred cCCCcEEEEecccccH-HHHHch
Q 005605 213 NRPDLKLVVMSATLEA-EKFQGY 234 (688)
Q Consensus 213 ~~~~~~vil~SAT~~~-~~~~~~ 234 (688)
.. +..+|+.||.++. ..+++.
T Consensus 180 ~~-g~tii~~sH~~~~~~~~~d~ 201 (241)
T PRK14250 180 KM-NLTVIWITHNMEQAKRIGDY 201 (241)
T ss_pred hC-CCEEEEEeccHHHHHHhCCE
Confidence 43 6789999999853 445543
No 266
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=8.4e-10 Score=114.63 Aligned_cols=155 Identities=18% Similarity=0.270 Sum_probs=101.4
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC---ccccCceEEEEcCCc-hhhhccHHHHHHHhh--
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPR-RVAAMSVSRRVAEEM-- 140 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~-- 140 (688)
+..|+.++|+|++||||||++..+. +++.++.. ....+.+.+++++|. .....++.+++....
T Consensus 30 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~ 109 (277)
T PRK13642 30 ITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMEN 109 (277)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHH
Confidence 5689999999999999999987432 22222211 011234667777764 344567877775321
Q ss_pred -ccc---ccceeceeeeeccc-ccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhc
Q 005605 141 -DVT---IGEEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKN 213 (688)
Q Consensus 141 -~~~---~~~~vg~~~~~~~~-~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~ 213 (688)
+.. ....+......-.. ...+..+..+|+|+.+++.++++++.+++++|+|| .++|......++.+++.+.+.
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~ 189 (277)
T PRK13642 110 QGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEK 189 (277)
T ss_pred cCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 100 00000000000001 12345677899999999999999999999999999 677788888888999887654
Q ss_pred CCCcEEEEecccccHHHHHc
Q 005605 214 RPDLKLVVMSATLEAEKFQG 233 (688)
Q Consensus 214 ~~~~~vil~SAT~~~~~~~~ 233 (688)
. +..+|+.||.++....++
T Consensus 190 ~-g~tiil~sH~~~~~~~~d 208 (277)
T PRK13642 190 Y-QLTVLSITHDLDEAASSD 208 (277)
T ss_pred c-CCEEEEEeCCHHHHHhCC
Confidence 3 678999999986543343
No 267
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=6e-10 Score=113.11 Aligned_cols=155 Identities=17% Similarity=0.243 Sum_probs=99.6
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCcc----ccCceEEEEcCCchhhhccHHHHHHHhhcc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD----RRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~----~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (688)
+.+|+.++|+|+|||||||++..+. +++.++.... ..+.+.++++.+......++.+++......
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 107 (237)
T PRK11614 28 INQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFF 107 (237)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhc
Confidence 5789999999999999999887432 2221111100 123455666666555556777776542110
Q ss_pred -cc---ccee-ceeeeec-ccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcC
Q 005605 143 -TI---GEEV-GYSIRFE-DCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNR 214 (688)
Q Consensus 143 -~~---~~~v-g~~~~~~-~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~ 214 (688)
.. ...+ .+...+. -.......+..+|+|+.+++.++++++.+++++|+|| ++.|......+..+++++.+.
T Consensus 108 ~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~- 186 (237)
T PRK11614 108 AERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ- 186 (237)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHC-
Confidence 00 0000 0000000 0011244667799999999999999999999999999 677777788888888887543
Q ss_pred CCcEEEEeccccc-HHHHHch
Q 005605 215 PDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 215 ~~~~vil~SAT~~-~~~~~~~ 234 (688)
+..+|++||.++ ...++++
T Consensus 187 -~~tiii~sH~~~~~~~~~d~ 206 (237)
T PRK11614 187 -GMTIFLVEQNANQALKLADR 206 (237)
T ss_pred -CCEEEEEeCcHHHHHhhCCE
Confidence 678999999874 4555543
No 268
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=9.7e-10 Score=114.19 Aligned_cols=156 Identities=19% Similarity=0.281 Sum_probs=99.9
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC---ccccCceEEEEcCCc-hhhhccHHHHHHHhh--
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPR-RVAAMSVSRRVAEEM-- 140 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~-- 140 (688)
+..|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++.+. .....++.+++....
T Consensus 27 i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~ 106 (277)
T PRK13652 27 APRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPIN 106 (277)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHH
Confidence 5689999999999999999987543 12211111 011123566676653 233457777764221
Q ss_pred -ccccc---ceeceeee-ecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhc
Q 005605 141 -DVTIG---EEVGYSIR-FEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKN 213 (688)
Q Consensus 141 -~~~~~---~~vg~~~~-~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~ 213 (688)
+.... ..+..... ++-....+..+..+|+|+.+++.++++++.+++++|+|| +++|......+.++++++.+.
T Consensus 107 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~ 186 (277)
T PRK13652 107 LGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPET 186 (277)
T ss_pred cCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 11000 00000000 000112355677899999999999999999999999999 677778888888999888664
Q ss_pred CCCcEEEEecccccH-HHHHch
Q 005605 214 RPDLKLVVMSATLEA-EKFQGY 234 (688)
Q Consensus 214 ~~~~~vil~SAT~~~-~~~~~~ 234 (688)
. +..+|+.||.++. ..+++.
T Consensus 187 ~-g~tvli~tH~~~~~~~~~dr 207 (277)
T PRK13652 187 Y-GMTVIFSTHQLDLVPEMADY 207 (277)
T ss_pred c-CCEEEEEecCHHHHHHhCCE
Confidence 3 5789999999853 455543
No 269
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.98 E-value=1.4e-09 Score=104.47 Aligned_cols=126 Identities=19% Similarity=0.275 Sum_probs=83.7
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhcCccC--CCc---cccCceEEEEcCCchhhhccHHHHHHHhhcccccceeceee
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDI--ETP---DRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSI 152 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~--~~~---~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~ 152 (688)
+..|+.++++|||||||||++...+.+.... ... .....+.++. + . .+ ...+|...
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~-q---------~-~~--------l~~~~L~~ 78 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFID-Q---------L-QF--------LIDVGLGY 78 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEh-H---------H-HH--------HHHcCCCc
Confidence 5789999999999999999998654321111 000 0000111111 1 1 11 11122110
Q ss_pred eecccccccccccccCHHHHHHHHhccccccC--CcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEecccccH
Q 005605 153 RFEDCSSARTVLKYLTDGMLLREAMTDPLLER--YKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (688)
Q Consensus 153 ~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~--~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~~ 228 (688)
...+..+..+|.|+.+++.++++++.+ ++++++|| ++.+......+...++++.+ . +..+|+.||.++.
T Consensus 79 -----~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tvIivSH~~~~ 151 (176)
T cd03238 79 -----LTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID-L-GNTVILIEHNLDV 151 (176)
T ss_pred -----cccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHH
Confidence 013445677999999999999999999 99999999 67777778888888888754 2 7889999999864
Q ss_pred H
Q 005605 229 E 229 (688)
Q Consensus 229 ~ 229 (688)
.
T Consensus 152 ~ 152 (176)
T cd03238 152 L 152 (176)
T ss_pred H
Confidence 3
No 270
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.98 E-value=9.1e-10 Score=124.25 Aligned_cols=155 Identities=19% Similarity=0.252 Sum_probs=102.3
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc---c-ccCceEEEEcCCchhhhccHHHHHHHhhcc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP---D-RRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~---~-~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (688)
+..|+.++|+|||||||||++..+. +++.++... . ..+.+.++++.+.....+++.+++......
T Consensus 27 i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 106 (501)
T PRK10762 27 VYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREF 106 (501)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhcccc
Confidence 5689999999999999999987432 222111110 0 123466777776555566777776532110
Q ss_pred c--cc--------ceece-eeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHH
Q 005605 143 T--IG--------EEVGY-SIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (688)
Q Consensus 143 ~--~~--------~~vg~-~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~ 209 (688)
. .+ ..+.. ...+.-....+..+..+|+|+.+++.++++++.++++++||| +++|......+..++++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 186 (501)
T PRK10762 107 VNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRE 186 (501)
T ss_pred ccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHH
Confidence 0 00 00000 000000112345677899999999999999999999999999 88888888999999998
Q ss_pred HHhcCCCcEEEEeccccc-HHHHHch
Q 005605 210 VLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 210 i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
+.+. +..+|+.||.++ +..+++.
T Consensus 187 l~~~--~~tvii~sHd~~~~~~~~d~ 210 (501)
T PRK10762 187 LKSQ--GRGIVYISHRLKEIFEICDD 210 (501)
T ss_pred HHHC--CCEEEEEeCCHHHHHHhCCE
Confidence 8543 678999999984 4555543
No 271
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=9.1e-10 Score=116.38 Aligned_cols=150 Identities=19% Similarity=0.280 Sum_probs=99.2
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc-------------------cccCceEEEEcCCc-h
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP-------------------DRRRKMMIACTQPR-R 126 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~-------------------~~~~~~~i~~t~p~-~ 126 (688)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.+++++|. .
T Consensus 49 i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~ 128 (320)
T PRK13631 49 FEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQ 128 (320)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhc
Confidence 5689999999999999999987432 222211110 11234567777763 2
Q ss_pred hhhccHHHHHHHhh---cc----------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc-
Q 005605 127 VAAMSVSRRVAEEM---DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE- 192 (688)
Q Consensus 127 ~~~~~v~~~v~~~~---~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE- 192 (688)
+...++.+++.... +. .....+|.. ....+..+..+|+|+.+|+.++++++.+++++||||
T Consensus 129 l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~-----~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEP 203 (320)
T PRK13631 129 LFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLD-----DSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEP 203 (320)
T ss_pred cccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCC-----hhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 22346666664321 10 001111110 011345667899999999999999999999999999
Q ss_pred -cCcChhhHHHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 193 -AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 193 -aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
+++|......++++++.+... +..+|++||.++ +..+++.
T Consensus 204 tsgLD~~~~~~l~~~L~~l~~~--g~TiiivtHd~~~~~~~adr 245 (320)
T PRK13631 204 TAGLDPKGEHEMMQLILDAKAN--NKTVFVITHTMEHVLEVADE 245 (320)
T ss_pred ccCCCHHHHHHHHHHHHHHHHC--CCEEEEEecCHHHHHHhCCE
Confidence 677777888888888887543 678999999986 4556654
No 272
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.98 E-value=7.9e-10 Score=114.12 Aligned_cols=156 Identities=19% Similarity=0.260 Sum_probs=99.8
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhh-cc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEM-DV 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~-~~ 142 (688)
+.+|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++.+......++.+++.... ..
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~ 109 (265)
T PRK10253 30 IPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPH 109 (265)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccc
Confidence 5689999999999999999987432 11111110 001124566777665544556666664321 00
Q ss_pred -cc----c----ceeceeee-ecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHH
Q 005605 143 -TI----G----EEVGYSIR-FEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (688)
Q Consensus 143 -~~----~----~~vg~~~~-~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i 210 (688)
.. . ..+..... +.-....+..+..+|+|+.+++.++++++.+++++++|| .++|....+.+..++.++
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l 189 (265)
T PRK10253 110 QPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSEL 189 (265)
T ss_pred cccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 00 0 00000000 000012356677899999999999999999999999999 677778888888888887
Q ss_pred HhcCCCcEEEEeccccc-HHHHHch
Q 005605 211 LKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 211 ~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
.+.. +..+|+.||.++ ...+++.
T Consensus 190 ~~~~-~~tiii~tH~~~~~~~~~d~ 213 (265)
T PRK10253 190 NREK-GYTLAAVLHDLNQACRYASH 213 (265)
T ss_pred HHhc-CCEEEEEeCCHHHHHHhCCE
Confidence 6543 678999999985 4555553
No 273
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=9.1e-10 Score=114.72 Aligned_cols=156 Identities=21% Similarity=0.293 Sum_probs=101.1
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCC--C---ccccCceEEEEcCCch-hhhccHHHHHHHhh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIE--T---PDRRRKMMIACTQPRR-VAAMSVSRRVAEEM 140 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~--~---~~~~~~~~i~~t~p~~-~~~~~v~~~v~~~~ 140 (688)
+..|+.++|+|+|||||||++..+. +++.++. . ....+.+.++++.+.. ....++.+++....
T Consensus 29 i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~ 108 (283)
T PRK13636 29 IKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGA 108 (283)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHH
Confidence 5789999999999999999987432 2222221 0 0112346677777632 23457777764321
Q ss_pred ---cccc---cceeceeeeeccc-ccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHH
Q 005605 141 ---DVTI---GEEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVL 211 (688)
Q Consensus 141 ---~~~~---~~~vg~~~~~~~~-~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~ 211 (688)
+... ...+......-.. ...+..+.-+|+|+.+++.++++++.+++++|+|| +++|......+.++++.+.
T Consensus 109 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~ 188 (283)
T PRK13636 109 VNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQ 188 (283)
T ss_pred HHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 1000 0000000000001 12356677899999999999999999999999999 6777788888889998886
Q ss_pred hcCCCcEEEEecccccH-HHHHch
Q 005605 212 KNRPDLKLVVMSATLEA-EKFQGY 234 (688)
Q Consensus 212 ~~~~~~~vil~SAT~~~-~~~~~~ 234 (688)
+.. +..++++||.++. ..+++.
T Consensus 189 ~~~-g~tillvsH~~~~~~~~~dr 211 (283)
T PRK13636 189 KEL-GLTIIIATHDIDIVPLYCDN 211 (283)
T ss_pred HhC-CCEEEEEecCHHHHHHhCCE
Confidence 643 6789999999854 445543
No 274
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.97 E-value=1.1e-09 Score=119.82 Aligned_cols=152 Identities=20% Similarity=0.338 Sum_probs=105.4
Q ss_pred HhcCCEEEEEeCCCCChhcchhH---------------HHhcCccCCC-------ccccCceEEEEcCCchh--hhccHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQ---------------FVLEGVDIET-------PDRRRKMMIACTQPRRV--AAMSVS 133 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~---------------~ll~~~~~~~-------~~~~~~~~i~~t~p~~~--~~~~v~ 133 (688)
+..|+.++|+|++||||||+... +++++.++.. .-..+.+.++++.|-.. ..+++-
T Consensus 32 v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg 111 (539)
T COG1123 32 VEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIG 111 (539)
T ss_pred ecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHH
Confidence 67899999999999999997652 2223322211 01234577888887533 335555
Q ss_pred HHHHHh--------------hcccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcCh
Q 005605 134 RRVAEE--------------MDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERT 197 (688)
Q Consensus 134 ~~v~~~--------------~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~ 197 (688)
+.+.+. ....+...||...... .+..++.+|+|+.+|++++.+++.+|++||+|| .-+|.
T Consensus 112 ~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~----~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDv 187 (539)
T COG1123 112 DQIREALRLHGKGSRAEARKRAVELLEQVGLPDPER----RDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDV 187 (539)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhh----hccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCH
Confidence 554432 1223344455432111 145788999999999999999999999999999 34566
Q ss_pred hhHHHHHHHHHHHHhcCCCcEEEEecccccH-HHHHch
Q 005605 198 LATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (688)
Q Consensus 198 ~~~d~ll~~l~~i~~~~~~~~vil~SAT~~~-~~~~~~ 234 (688)
.....++++++.+.++. +..+|++||.+.+ ..+++.
T Consensus 188 t~q~qIL~llk~l~~e~-g~a~l~ITHDl~Vva~~aDr 224 (539)
T COG1123 188 TTQAQILDLLKDLQREL-GMAVLFITHDLGVVAELADR 224 (539)
T ss_pred HHHHHHHHHHHHHHHHc-CcEEEEEcCCHHHHHHhcCe
Confidence 77778999999998776 8999999999964 566654
No 275
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.97 E-value=1.2e-09 Score=113.41 Aligned_cols=149 Identities=21% Similarity=0.314 Sum_probs=99.0
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc-----cccCceEEEEcCCc-hhhhccHHHHHHHhh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP-----DRRRKMMIACTQPR-RVAAMSVSRRVAEEM 140 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~-----~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~ 140 (688)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+. .....++.+++....
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~ 104 (275)
T PRK13639 25 AEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGP 104 (275)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHH
Confidence 5789999999999999999987432 222211100 01234566777653 223356766664221
Q ss_pred c---c----------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHH
Q 005605 141 D---V----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (688)
Q Consensus 141 ~---~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ 205 (688)
. . .....+|.. ...+..+..+|+|+.+++.++++++.+++++|+|| ++.|......+..
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~L~------~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~ 178 (275)
T PRK13639 105 LNLGLSKEEVEKRVKEALKAVGME------GFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMK 178 (275)
T ss_pred HHcCCCHHHHHHHHHHHHHHCCCc------hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 0 0 011111111 12345677899999999999999999999999999 6777788888889
Q ss_pred HHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 206 LLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 206 ~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
+++.+.+. +..+|++||.++ +..+++.
T Consensus 179 ~l~~l~~~--~~til~vtH~~~~~~~~~d~ 206 (275)
T PRK13639 179 LLYDLNKE--GITIIISTHDVDLVPVYADK 206 (275)
T ss_pred HHHHHHHC--CCEEEEEecCHHHHHHhCCE
Confidence 99887643 688999999985 3445543
No 276
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.97 E-value=1e-09 Score=105.54 Aligned_cols=59 Identities=20% Similarity=0.350 Sum_probs=50.5
Q ss_pred cCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEecccccH
Q 005605 167 LTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (688)
Q Consensus 167 lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~~ 228 (688)
+|+|+.+++.++++++.+++++++|| ++.|....+.+..+++.+. . +..+|+.||.++.
T Consensus 97 LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~--~~tii~~sh~~~~ 157 (171)
T cd03228 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA-K--GKTVIVIAHRLST 157 (171)
T ss_pred hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-C--CCEEEEEecCHHH
Confidence 99999999999999999999999999 7777777888888888763 2 4788899998753
No 277
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.97 E-value=1.1e-09 Score=114.07 Aligned_cols=151 Identities=23% Similarity=0.333 Sum_probs=96.3
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc----cccCceEEEEcCCch-hhhccHHHHHHHhh-
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP----DRRRKMMIACTQPRR-VAAMSVSRRVAEEM- 140 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~----~~~~~~~i~~t~p~~-~~~~~v~~~v~~~~- 140 (688)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.+++++|.. ....++.+++....
T Consensus 33 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~ 112 (280)
T PRK13633 33 VKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPE 112 (280)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHh
Confidence 5689999999999999999987432 222222110 112345677776632 22235555553211
Q ss_pred --cccc---cceeceeee-ecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHh
Q 005605 141 --DVTI---GEEVGYSIR-FEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLK 212 (688)
Q Consensus 141 --~~~~---~~~vg~~~~-~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~ 212 (688)
+... ...+..... +.-....++.+..+|+|+.+++.+++.++.+++++|+|| +.+|......+..+++++.+
T Consensus 113 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~ 192 (280)
T PRK13633 113 NLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNK 192 (280)
T ss_pred hcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 1000 000000000 000112345677899999999999999999999999999 67777888888888888865
Q ss_pred cCCCcEEEEecccccHH
Q 005605 213 NRPDLKLVVMSATLEAE 229 (688)
Q Consensus 213 ~~~~~~vil~SAT~~~~ 229 (688)
.. +..+|+.||.++..
T Consensus 193 ~~-g~tillvtH~~~~~ 208 (280)
T PRK13633 193 KY-GITIILITHYMEEA 208 (280)
T ss_pred hc-CCEEEEEecChHHH
Confidence 43 67899999998643
No 278
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.97 E-value=8.7e-10 Score=109.82 Aligned_cols=146 Identities=21% Similarity=0.257 Sum_probs=96.8
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc--cccCceEEEEcCCchhhhccHHHHHHHhh---c
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP--DRRRKMMIACTQPRRVAAMSVSRRVAEEM---D 141 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~--~~~~~~~i~~t~p~~~~~~~v~~~v~~~~---~ 141 (688)
+.+| .++|+|+|||||||++..+. +++.++... ...+.+.++++.+......++.+++.... +
T Consensus 23 i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 101 (211)
T cd03264 23 LGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG 101 (211)
T ss_pred EcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC
Confidence 4567 89999999999999987432 122111110 11234566777665555567777764321 1
Q ss_pred c----------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHH
Q 005605 142 V----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (688)
Q Consensus 142 ~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~ 209 (688)
. .....+|.. ...++.+..+|+|+.+++.++++++.+++++++|| ++.|......+.+++++
T Consensus 102 ~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 175 (211)
T cd03264 102 IPSKEVKARVDEVLELVNLG------DRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSE 175 (211)
T ss_pred CCHHHHHHHHHHHHHHCCCH------HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 0 001111110 11245677899999999999999999999999999 77888888888899988
Q ss_pred HHhcCCCcEEEEecccccH-HHHHc
Q 005605 210 VLKNRPDLKLVVMSATLEA-EKFQG 233 (688)
Q Consensus 210 i~~~~~~~~vil~SAT~~~-~~~~~ 233 (688)
+.+ +..+|+.||.++. ..+++
T Consensus 176 ~~~---~~tii~vsH~~~~~~~~~d 197 (211)
T cd03264 176 LGE---DRIVILSTHIVEDVESLCN 197 (211)
T ss_pred HhC---CCEEEEEcCCHHHHHHhCC
Confidence 754 3688999998853 34444
No 279
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.97 E-value=1.5e-09 Score=109.83 Aligned_cols=150 Identities=23% Similarity=0.274 Sum_probs=99.2
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC-ccccCceEEEEcCCchhhhccHHHHHHHhhcc---
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (688)
+..|+.++|+|++||||||++.... +++.+... ....+.+.++++.+......++.+++......
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~ 102 (232)
T cd03300 23 IKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKL 102 (232)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcCC
Confidence 5689999999999999999987432 11111111 01123456677666555455776666422110
Q ss_pred ----------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHH
Q 005605 143 ----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (688)
Q Consensus 143 ----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i 210 (688)
.+...+|.. ...+..+..+|+|+.+++.++++++.+++++|+|| +..|......+..+++.+
T Consensus 103 ~~~~~~~~~~~~l~~~~l~------~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~ 176 (232)
T cd03300 103 PKAEIKERVAEALDLVQLE------GYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRL 176 (232)
T ss_pred CHHHHHHHHHHHHHHcCCc------hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 011111211 12345667899999999999999999999999999 566677777788888887
Q ss_pred HhcCCCcEEEEeccccc-HHHHHch
Q 005605 211 LKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 211 ~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
.++. +..+|+.||.++ ...+++.
T Consensus 177 ~~~~-~~tiii~sh~~~~~~~~~d~ 200 (232)
T cd03300 177 QKEL-GITFVFVTHDQEEALTMSDR 200 (232)
T ss_pred HHHc-CCEEEEEeCCHHHHHHhcCE
Confidence 6543 678999999985 3455543
No 280
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.96 E-value=1.6e-09 Score=103.25 Aligned_cols=125 Identities=18% Similarity=0.295 Sum_probs=83.4
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhcccccceeceeeeeccc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC 157 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~ 157 (688)
+.+|+.+++.|++||||||++..+. +. ... ..+-+.+--+ ........+.. ...+||...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~--G~-~~~---~~G~v~~~g~--~~~~~~~~~~~--------~~~i~~~~q---- 82 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILS--GL-YKP---DSGEILVDGK--EVSFASPRDAR--------RAGIAMVYQ---- 82 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHh--CC-CCC---CCeEEEECCE--ECCcCCHHHHH--------hcCeEEEEe----
Confidence 6789999999999999999988543 22 111 0122111111 11111111110 112344321
Q ss_pred ccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHc
Q 005605 158 SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 158 ~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~ 233 (688)
+|+|+.+++.++++++.+++++++|| .+.|......+..+++++.+. +..+|++||.++ ...+++
T Consensus 83 ---------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~--~~tiii~sh~~~~~~~~~d 150 (163)
T cd03216 83 ---------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQ--GVAVIFISHRLDEVFEIAD 150 (163)
T ss_pred ---------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999999 677777788888888887543 678999999985 455554
No 281
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.96 E-value=1.2e-09 Score=115.97 Aligned_cols=153 Identities=20% Similarity=0.302 Sum_probs=99.8
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH---------------hcCccCCCcc-------ccCceEEEEcCCc--hhhhccHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV---------------LEGVDIETPD-------RRRKMMIACTQPR--RVAAMSVS 133 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l---------------l~~~~~~~~~-------~~~~~~i~~t~p~--~~~~~~v~ 133 (688)
+..|+.++|+|++||||||++..++ +++.++.... ..+.+.++++.|. ....+++.
T Consensus 30 i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~ 109 (326)
T PRK11022 30 VKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVG 109 (326)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHH
Confidence 6789999999999999999876432 1121111100 1124677888773 22334444
Q ss_pred HHHHHhhc--------------ccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcCh
Q 005605 134 RRVAEEMD--------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERT 197 (688)
Q Consensus 134 ~~v~~~~~--------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~ 197 (688)
+.+..... ......+|... .....+..+..+|+|+.+|++++++++.++++||+|| ..+|.
T Consensus 110 ~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~---~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~ 186 (326)
T PRK11022 110 FQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPD---PASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDV 186 (326)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCC---hHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Confidence 44332211 11112222210 0011245677899999999999999999999999999 56677
Q ss_pred hhHHHHHHHHHHHHhcCCCcEEEEecccccH-HHHHch
Q 005605 198 LATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (688)
Q Consensus 198 ~~~d~ll~~l~~i~~~~~~~~vil~SAT~~~-~~~~~~ 234 (688)
.....++++++.+.++. +..+|+.||.++. ..+++.
T Consensus 187 ~~~~~il~lL~~l~~~~-g~til~iTHdl~~~~~~adr 223 (326)
T PRK11022 187 TIQAQIIELLLELQQKE-NMALVLITHDLALVAEAAHK 223 (326)
T ss_pred HHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCE
Confidence 77778889998887654 7899999999964 456654
No 282
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.96 E-value=1.2e-09 Score=116.08 Aligned_cols=153 Identities=20% Similarity=0.275 Sum_probs=101.1
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHh--------------cCccCCCc--c-----ccCceEEEEcCCc--hhhhccHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVL--------------EGVDIETP--D-----RRRKMMIACTQPR--RVAAMSVSR 134 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll--------------~~~~~~~~--~-----~~~~~~i~~t~p~--~~~~~~v~~ 134 (688)
+..|+.++|+|++||||||++..+.- ++.++... . ..+.+.++++.|. ....+++.+
T Consensus 39 i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~ 118 (330)
T PRK09473 39 LRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGE 118 (330)
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHH
Confidence 57899999999999999998874431 11111110 0 0135778888873 223455555
Q ss_pred HHHHhhc--------------ccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChh
Q 005605 135 RVAEEMD--------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTL 198 (688)
Q Consensus 135 ~v~~~~~--------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~ 198 (688)
++..... ..+...+|... .....+..+..+|+|+.+|+.++++++.++++||+|| ..+|..
T Consensus 119 ~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~---~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~ 195 (330)
T PRK09473 119 QLMEVLMLHKGMSKAEAFEESVRMLDAVKMPE---ARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVT 195 (330)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC---hHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHH
Confidence 4432211 01112222210 0011245677899999999999999999999999999 677778
Q ss_pred hHHHHHHHHHHHHhcCCCcEEEEecccccH-HHHHch
Q 005605 199 ATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (688)
Q Consensus 199 ~~d~ll~~l~~i~~~~~~~~vil~SAT~~~-~~~~~~ 234 (688)
....++.+++++.+.. +..+|++||.++. ..+++.
T Consensus 196 ~~~~i~~lL~~l~~~~-g~til~iTHdl~~~~~~~Dr 231 (330)
T PRK09473 196 VQAQIMTLLNELKREF-NTAIIMITHDLGVVAGICDK 231 (330)
T ss_pred HHHHHHHHHHHHHHHc-CCEEEEEECCHHHHHHhCCE
Confidence 8888999999987654 6899999999964 446654
No 283
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.96 E-value=8.8e-10 Score=113.16 Aligned_cols=155 Identities=20% Similarity=0.238 Sum_probs=98.3
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHh-----------cCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhc-c
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVL-----------EGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD-V 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll-----------~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-~ 142 (688)
+..|+.++|+|+|||||||++..+.= ++.++.. ....+.+.++++++......++.+++..... .
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~ 104 (255)
T PRK11231 25 LPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPW 104 (255)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchh
Confidence 56899999999999999999874431 1111100 0012235666766654444566666543210 0
Q ss_pred -cc-c-------ceeceeeeeccc-ccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHH
Q 005605 143 -TI-G-------EEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (688)
Q Consensus 143 -~~-~-------~~vg~~~~~~~~-~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i 210 (688)
.. + ..+......-.. ...+..+..+|+|+.+++.++++++.+++++|+|| .+.|....+.+..+++.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l 184 (255)
T PRK11231 105 LSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMREL 184 (255)
T ss_pred hhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 00 0 000000000000 11355677899999999999999999999999999 677777788888888887
Q ss_pred HhcCCCcEEEEeccccc-HHHHHch
Q 005605 211 LKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 211 ~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
.+. +..+|+.||.++ +..++++
T Consensus 185 ~~~--~~tiii~tH~~~~~~~~~d~ 207 (255)
T PRK11231 185 NTQ--GKTVVTVLHDLNQASRYCDH 207 (255)
T ss_pred HHC--CCEEEEEECCHHHHHHhcCE
Confidence 543 678999999885 3556554
No 284
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.96 E-value=1.2e-09 Score=123.64 Aligned_cols=155 Identities=17% Similarity=0.227 Sum_probs=101.6
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCcc----ccCceEEEEcCCchhhhccHHHHHHHhhcc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD----RRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~----~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (688)
+.+|+.++|+|+|||||||++..+. +++.++.... ..+.+.++++.+......++.+++......
T Consensus 28 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 107 (510)
T PRK09700 28 VYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHL 107 (510)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhcccc
Confidence 5689999999999999999987432 2221111100 113466777776555556777766432100
Q ss_pred --c-cc----------ceec-eeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHH
Q 005605 143 --T-IG----------EEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL 206 (688)
Q Consensus 143 --~-~~----------~~vg-~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~ 206 (688)
. .+ ..+. +...+.-....+..+..+|+|+++|+.++++++.+++++|+|| +++|......+..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 187 (510)
T PRK09700 108 TKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLI 187 (510)
T ss_pred ccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 0 00 0000 0000000112355677899999999999999999999999999 88888889899999
Q ss_pred HHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 207 LKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 207 l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
++++.+. +..+|+.||.++ +..+++.
T Consensus 188 l~~l~~~--g~tiiivsHd~~~~~~~~d~ 214 (510)
T PRK09700 188 MNQLRKE--GTAIVYISHKLAEIRRICDR 214 (510)
T ss_pred HHHHHhC--CCEEEEEeCCHHHHHHhCCE
Confidence 9998653 678999999984 4455543
No 285
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.96 E-value=1.1e-09 Score=106.06 Aligned_cols=155 Identities=17% Similarity=0.233 Sum_probs=104.3
Q ss_pred HhcCCEEEEEeCCCCChhcchh-----------HHHhcCccCCCc----cccCceEEEEcCCchhhhccHHHHHHHhhcc
Q 005605 78 LKANQVIILVGETGSGKTTQIP-----------QFVLEGVDIETP----DRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~-----------~~ll~~~~~~~~----~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (688)
+..|+++.++|+||+||||++. .+.+++.++... ....++..+|..-..+..++|.+++.-....
T Consensus 26 v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~ 105 (237)
T COG0410 26 VERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYA 105 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhc
Confidence 5789999999999999999987 344555555431 1234666777666677889999998643211
Q ss_pred cc---cc------eeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHH
Q 005605 143 TI---GE------EVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVL 211 (688)
Q Consensus 143 ~~---~~------~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~ 211 (688)
.- .. ...+-.+. ....+..--.+|+|+.+.+.++++++.+|++++||| ...-+.-...++..++++.
T Consensus 106 ~~~~~~~~~~~e~v~~lFP~L--ker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~ 183 (237)
T COG0410 106 RRDKEAQERDLEEVYELFPRL--KERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELR 183 (237)
T ss_pred ccccccccccHHHHHHHChhH--HHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHH
Confidence 10 00 00000000 011233444699999999999999999999999999 5566666777888888877
Q ss_pred hcCCCcEEEEecccccH-HHHHchh
Q 005605 212 KNRPDLKLVVMSATLEA-EKFQGYF 235 (688)
Q Consensus 212 ~~~~~~~vil~SAT~~~-~~~~~~~ 235 (688)
+.. +..++++-...+. -.+++++
T Consensus 184 ~~~-g~tIlLVEQn~~~Al~iaDr~ 207 (237)
T COG0410 184 KEG-GMTILLVEQNARFALEIADRG 207 (237)
T ss_pred HcC-CcEEEEEeccHHHHHHhhCEE
Confidence 654 5788888777643 3466554
No 286
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.96 E-value=8.8e-10 Score=115.06 Aligned_cols=150 Identities=21% Similarity=0.308 Sum_probs=100.9
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc-------cccCceEEEEcCCc-hhhhccHHHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP-------DRRRKMMIACTQPR-RVAAMSVSRRVAE 138 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~-------~~~~~~~i~~t~p~-~~~~~~v~~~v~~ 138 (688)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.+++++|. .....++.+++..
T Consensus 30 i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~ 109 (287)
T PRK13641 30 LEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEF 109 (287)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHH
Confidence 5689999999999999999987433 222222110 01234567777763 2323577777643
Q ss_pred hh---cc----------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHH
Q 005605 139 EM---DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (688)
Q Consensus 139 ~~---~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~l 203 (688)
.. +. .+...+|.. ....+..+..+|+|+.+++.++++++.+++++|+|| +++|......+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~gL~-----~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l 184 (287)
T PRK13641 110 GPKNFGFSEDEAKEKALKWLKKVGLS-----EDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEM 184 (287)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCC-----hhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHH
Confidence 21 10 001111110 012355677899999999999999999999999999 77888888889
Q ss_pred HHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 204 FGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 204 l~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
..+++.+.+. +..+|+.||.++ +..+++.
T Consensus 185 ~~~l~~l~~~--g~tvlivsH~~~~~~~~~d~ 214 (287)
T PRK13641 185 MQLFKDYQKA--GHTVILVTHNMDDVAEYADD 214 (287)
T ss_pred HHHHHHHHhC--CCEEEEEeCCHHHHHHhCCE
Confidence 9999887543 688999999985 4566654
No 287
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.95 E-value=2e-09 Score=106.25 Aligned_cols=125 Identities=18% Similarity=0.268 Sum_probs=82.5
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhcC-ccCCCc---------------cc-cCceEEEEcCCchhhhccHHHHHHHhh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLEG-VDIETP---------------DR-RRKMMIACTQPRRVAAMSVSRRVAEEM 140 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~-~~~~~~---------------~~-~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (688)
+..|+.++|+|++||||||++..+.-.. ...... .. ...+.++++.+......++.+.+
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l---- 98 (200)
T cd03217 23 IKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFL---- 98 (200)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHH----
Confidence 5789999999999999999987543210 000000 00 01123333333222222222111
Q ss_pred cccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcE
Q 005605 141 DVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLK 218 (688)
Q Consensus 141 ~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~ 218 (688)
......+|+|+.+++.++++++.+++++++|| .+.|....+.+..+++++.+. +..
T Consensus 99 --------------------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~--~~t 156 (200)
T cd03217 99 --------------------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE--GKS 156 (200)
T ss_pred --------------------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHC--CCE
Confidence 11224699999999999999999999999999 677778888888888887543 578
Q ss_pred EEEecccccH
Q 005605 219 LVVMSATLEA 228 (688)
Q Consensus 219 vil~SAT~~~ 228 (688)
+|+.||.++.
T Consensus 157 iii~sh~~~~ 166 (200)
T cd03217 157 VLIITHYQRL 166 (200)
T ss_pred EEEEecCHHH
Confidence 8999998753
No 288
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.95 E-value=1.7e-09 Score=110.47 Aligned_cols=149 Identities=17% Similarity=0.213 Sum_probs=94.4
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhcCccCCCc----cccCceEEEEcCCchhhh--ccHHHHHHHhhc------cccc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETP----DRRRKMMIACTQPRRVAA--MSVSRRVAEEMD------VTIG 145 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~----~~~~~~~i~~t~p~~~~~--~~v~~~v~~~~~------~~~~ 145 (688)
+..|+.++|+|+|||||||++..+.=... .... .....+.++++.+..... .++.+.+....+ ..+.
T Consensus 27 i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~-p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 105 (251)
T PRK09544 27 LKPGKILTLLGPNGAGKSTLVRVVLGLVA-PDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPAL 105 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHH
Confidence 57899999999999999999885431110 1110 012245566665533221 133333211100 0011
Q ss_pred ceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEec
Q 005605 146 EEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMS 223 (688)
Q Consensus 146 ~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~S 223 (688)
..+|.. ...+..+..+|+|+.+++.++++++.+++++|+|| ++.|......+..+++++.+.. +..+|+.|
T Consensus 106 ~~~gl~------~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~-g~tiiivs 178 (251)
T PRK09544 106 KRVQAG------HLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRREL-DCAVLMVS 178 (251)
T ss_pred HHcCCh------HHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhc-CCEEEEEe
Confidence 111211 11245677899999999999999999999999999 7777777888888888876543 57899999
Q ss_pred ccccH-HHHHch
Q 005605 224 ATLEA-EKFQGY 234 (688)
Q Consensus 224 AT~~~-~~~~~~ 234 (688)
|.++. ..+++.
T Consensus 179 H~~~~i~~~~d~ 190 (251)
T PRK09544 179 HDLHLVMAKTDE 190 (251)
T ss_pred cCHHHHHHhCCE
Confidence 99853 455543
No 289
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.95 E-value=1.2e-09 Score=112.12 Aligned_cols=155 Identities=23% Similarity=0.278 Sum_probs=98.3
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc---cccCceEEEEcCCchhhhccHHHHHHHhhc-c
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP---DRRRKMMIACTQPRRVAAMSVSRRVAEEMD-V 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~---~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-~ 142 (688)
+.+|+.++|+|+|||||||++..+. +++.++... ...+.+.++++++......++.+++..... .
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 103 (256)
T TIGR03873 24 APPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPH 103 (256)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhh
Confidence 4689999999999999999987532 111111110 012235566666544444677777643210 0
Q ss_pred -cc-c-------ceeceee-eecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHH
Q 005605 143 -TI-G-------EEVGYSI-RFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (688)
Q Consensus 143 -~~-~-------~~vg~~~-~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i 210 (688)
.. . ..+.... .+.-....+..+..+|+|+.+++.++++++.+++++|+|| ++.|....+.+..+++++
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 183 (256)
T TIGR03873 104 RSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVREL 183 (256)
T ss_pred hhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 00 0 0000000 0000112345667899999999999999999999999999 777778888888998887
Q ss_pred HhcCCCcEEEEeccccc-HHHHHch
Q 005605 211 LKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 211 ~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
.+. +..+|++||.++ ...+++.
T Consensus 184 ~~~--~~tiii~sH~~~~~~~~~d~ 206 (256)
T TIGR03873 184 AAT--GVTVVAALHDLNLAASYCDH 206 (256)
T ss_pred Hhc--CCEEEEEeCCHHHHHHhCCE
Confidence 643 578999999985 3355543
No 290
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.95 E-value=1.7e-09 Score=109.64 Aligned_cols=155 Identities=20% Similarity=0.259 Sum_probs=101.0
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC-ccccCceEEEEcCCchhhhccHHHHHHHhhccc--
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT-- 143 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~-- 143 (688)
+.+|+.++|+|+|||||||++.... +++.+... ....+.+.++++.+......++.+++.......
T Consensus 22 i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~ 101 (235)
T cd03299 22 VERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKV 101 (235)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCC
Confidence 5689999999999999999987432 11111111 011235667777766665677777775321100
Q ss_pred ----ccceec-eeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCC
Q 005605 144 ----IGEEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPD 216 (688)
Q Consensus 144 ----~~~~vg-~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~ 216 (688)
....+. +...+.-....+..+..+|+|+.+++.++++++.+++++++|| ++.|....+.+..+++.+.... +
T Consensus 102 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~-~ 180 (235)
T cd03299 102 DKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEF-G 180 (235)
T ss_pred CHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhc-C
Confidence 000000 0000000112345667899999999999999999999999999 6777788888888888876543 6
Q ss_pred cEEEEecccccH-HHHHc
Q 005605 217 LKLVVMSATLEA-EKFQG 233 (688)
Q Consensus 217 ~~vil~SAT~~~-~~~~~ 233 (688)
..+|+.||.++. ..+++
T Consensus 181 ~tili~tH~~~~~~~~~d 198 (235)
T cd03299 181 VTVLHVTHDFEEAWALAD 198 (235)
T ss_pred CEEEEEecCHHHHHHhCC
Confidence 789999998853 44544
No 291
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.95 E-value=1.3e-09 Score=113.47 Aligned_cols=148 Identities=22% Similarity=0.315 Sum_probs=99.3
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhc--------------CccCCC---ccccCceEEEEcCCc-hhhhccHHHHHHHh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLE--------------GVDIET---PDRRRKMMIACTQPR-RVAAMSVSRRVAEE 139 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~--------------~~~~~~---~~~~~~~~i~~t~p~-~~~~~~v~~~v~~~ 139 (688)
+..|+.++|+|+|||||||++..+.=. +.++.. ....+.+.++++.|. .....++.+++...
T Consensus 30 i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~ 109 (282)
T PRK13640 30 IPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFG 109 (282)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhh
Confidence 578999999999999999998753311 111110 011224566776663 34456777777522
Q ss_pred h---cc----------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHH
Q 005605 140 M---DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (688)
Q Consensus 140 ~---~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll 204 (688)
. +. .....+|. ....+..+..+|+|+.+++.++++++.+++++|+|| +++|......+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~L------~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~ 183 (282)
T PRK13640 110 LENRAVPRPEMIKIVRDVLADVGM------LDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQIL 183 (282)
T ss_pred HHhCCCCHHHHHHHHHHHHHHCCC------hhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH
Confidence 1 10 00111111 112356677899999999999999999999999999 777778888888
Q ss_pred HHHHHHHhcCCCcEEEEecccccHHHHH
Q 005605 205 GLLKEVLKNRPDLKLVVMSATLEAEKFQ 232 (688)
Q Consensus 205 ~~l~~i~~~~~~~~vil~SAT~~~~~~~ 232 (688)
++++.+.+.. +..+|+.||.++...++
T Consensus 184 ~~l~~l~~~~-g~tvli~tH~~~~~~~~ 210 (282)
T PRK13640 184 KLIRKLKKKN-NLTVISITHDIDEANMA 210 (282)
T ss_pred HHHHHHHHhc-CCEEEEEecCHHHHHhC
Confidence 9888876543 67899999998644333
No 292
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.95 E-value=2.1e-09 Score=108.03 Aligned_cols=146 Identities=20% Similarity=0.218 Sum_probs=95.7
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCccccCceEEEEcCCchhh--hccHHHHHHHhhc---
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPDRRRKMMIACTQPRRVA--AMSVSRRVAEEMD--- 141 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~~~~~~~i~~t~p~~~~--~~~v~~~v~~~~~--- 141 (688)
+.+|+.++|+|++||||||++.... +++.+.. ...+.+.++++.+.... ..++.+++.....
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 5689999999999999999987433 1111110 01234566666654321 2455555532110
Q ss_pred --------------ccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHH
Q 005605 142 --------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (688)
Q Consensus 142 --------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ 205 (688)
......+|.. ...+..+..+|+|+.+++.++++++.+++++|+|| +++|......+..
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~ 154 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLT------ELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTE 154 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCc------hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 0000111110 11245667799999999999999999999999999 7777888888888
Q ss_pred HHHHHHhcCCCcEEEEeccccc-HHHHHc
Q 005605 206 LLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 206 ~l~~i~~~~~~~~vil~SAT~~-~~~~~~ 233 (688)
+++++.+. +..+|+.||.++ ...+++
T Consensus 155 ~l~~~~~~--~~tvii~sH~~~~~~~~~d 181 (223)
T TIGR03771 155 LFIELAGA--GTAILMTTHDLAQAMATCD 181 (223)
T ss_pred HHHHHHHc--CCEEEEEeCCHHHHHHhCC
Confidence 88887543 678999999985 444544
No 293
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.94 E-value=1.8e-09 Score=109.57 Aligned_cols=156 Identities=19% Similarity=0.224 Sum_probs=100.6
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc-cccCceEEEEcCCchhhhccHHHHHHHhhcc---
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP-DRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~-~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (688)
+.+|+.++|+|++||||||++..+. +++.++... ...+.+.++++.+......++.+++......
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~ 102 (237)
T TIGR00968 23 VPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKH 102 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcCC
Confidence 6789999999999999999987443 122111110 1123466777777666556777776432110
Q ss_pred cc---cceec-eeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCC
Q 005605 143 TI---GEEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPD 216 (688)
Q Consensus 143 ~~---~~~vg-~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~ 216 (688)
.. ...+. ...++.-....+..+..+|+|+.+++.+++.++.+++++|+|| .++|....+.+..+++++.... +
T Consensus 103 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~-~ 181 (237)
T TIGR00968 103 PKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEV-H 181 (237)
T ss_pred CHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-C
Confidence 00 00000 0000000111245566799999999999999999999999999 6677777788888888875532 5
Q ss_pred cEEEEeccccc-HHHHHch
Q 005605 217 LKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 217 ~~vil~SAT~~-~~~~~~~ 234 (688)
..+|+.||.++ ...+++.
T Consensus 182 ~tvli~sH~~~~~~~~~d~ 200 (237)
T TIGR00968 182 VTTVFVTHDQEEAMEVADR 200 (237)
T ss_pred CEEEEEeCCHHHHHhhcCE
Confidence 78999999885 3555543
No 294
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.94 E-value=1.4e-09 Score=106.93 Aligned_cols=147 Identities=14% Similarity=0.095 Sum_probs=89.8
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHh-----------cCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhccc-cc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVL-----------EGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT-IG 145 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll-----------~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~-~~ 145 (688)
+..|+.++|+|+|||||||++..+.- ++.++.... ...+.+++..+......++.+++....... ..
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~ 101 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA-KPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSA 101 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh-hhhEEeccCCcCCCccCCHHHHHHHHHHhcccH
Confidence 56899999999999999999874321 111111100 112334444443334467777664321110 00
Q ss_pred ceeceeeee-cccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEe
Q 005605 146 EEVGYSIRF-EDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVM 222 (688)
Q Consensus 146 ~~vg~~~~~-~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~ 222 (688)
..+...... .-....+..+..+|+|+.+++.++++++.+++++++|| ++.|....+.+..+++...+ .+..+|+.
T Consensus 102 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~--~~~tiii~ 179 (195)
T PRK13541 102 ETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKAN--SGGIVLLS 179 (195)
T ss_pred HHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEE
Confidence 000000000 00011245567799999999999999999999999999 56666777777777765433 26789999
Q ss_pred ccccc
Q 005605 223 SATLE 227 (688)
Q Consensus 223 SAT~~ 227 (688)
||..+
T Consensus 180 sh~~~ 184 (195)
T PRK13541 180 SHLES 184 (195)
T ss_pred eCCcc
Confidence 99874
No 295
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.93 E-value=1.9e-09 Score=109.23 Aligned_cols=155 Identities=17% Similarity=0.217 Sum_probs=96.1
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHh-----------cCccCCC--ccccCceEEEEcC-CchhhhccHHHHHHHhh---
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVL-----------EGVDIET--PDRRRKMMIACTQ-PRRVAAMSVSRRVAEEM--- 140 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll-----------~~~~~~~--~~~~~~~~i~~t~-p~~~~~~~v~~~v~~~~--- 140 (688)
+..|+.++|+|+|||||||++..+.- ++.+... ....+.+.+++.+ +......++.+++....
T Consensus 44 i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~ 123 (236)
T cd03267 44 IEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIY 123 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHc
Confidence 67999999999999999999875431 1111000 0011234455534 33334456666553211
Q ss_pred ccc---ccceeceeee-ecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcC
Q 005605 141 DVT---IGEEVGYSIR-FEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNR 214 (688)
Q Consensus 141 ~~~---~~~~vg~~~~-~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~ 214 (688)
+.. ....+..... +.-....++.+..+|+|+.+++.++++++.+++++|+|| ++.|......+.++++.+.+..
T Consensus 124 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 203 (236)
T cd03267 124 DLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRER 203 (236)
T ss_pred CCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 100 0000000000 000011345667899999999999999999999999999 7778888888888888876543
Q ss_pred CCcEEEEeccccc-HHHHHc
Q 005605 215 PDLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 215 ~~~~vil~SAT~~-~~~~~~ 233 (688)
+..+|+.||.++ ...+++
T Consensus 204 -~~tiiivsH~~~~~~~~~d 222 (236)
T cd03267 204 -GTTVLLTSHYMKDIEALAR 222 (236)
T ss_pred -CCEEEEEecCHHHHHHhCC
Confidence 578999999885 345554
No 296
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.93 E-value=1.8e-09 Score=110.37 Aligned_cols=149 Identities=21% Similarity=0.287 Sum_probs=98.3
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH----------hcCccCCCc---cccCceEEEEcCCchhhhccHHHHHHHhhcc--
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV----------LEGVDIETP---DRRRKMMIACTQPRRVAAMSVSRRVAEEMDV-- 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l----------l~~~~~~~~---~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~-- 142 (688)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+......++.+++......
T Consensus 19 i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~ 98 (248)
T PRK03695 19 VRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPDKT 98 (248)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcCccCC
Confidence 6789999999999999999987432 111111110 0012345666665444456676666532110
Q ss_pred ----------cccceeceeeeecccccccccccccCHHHHHHHHhcccccc-------CCcEEeecc--cCcChhhHHHH
Q 005605 143 ----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLE-------RYKVIVLDE--AHERTLATDVL 203 (688)
Q Consensus 143 ----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~-------~~~~lIlDE--aher~~~~d~l 203 (688)
.+...+|. ....+..+..+|+|+.+++.++++++. +++++|+|| .++|......+
T Consensus 99 ~~~~~~~~~~~~l~~~~l------~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l 172 (248)
T PRK03695 99 RTEAVASALNEVAEALGL------DDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAAL 172 (248)
T ss_pred CcHHHHHHHHHHHHHcCC------HhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHH
Confidence 00111111 011245667899999999999999986 679999999 77777888888
Q ss_pred HHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 204 FGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 204 l~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
..+++.+.+. +..+|+.||.++ ...+++.
T Consensus 173 ~~~L~~~~~~--~~tvi~~sH~~~~~~~~~d~ 202 (248)
T PRK03695 173 DRLLSELCQQ--GIAVVMSSHDLNHTLRHADR 202 (248)
T ss_pred HHHHHHHHhC--CCEEEEEecCHHHHHHhCCE
Confidence 8888887543 678999999986 5566554
No 297
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.93 E-value=1.1e-09 Score=114.48 Aligned_cols=156 Identities=17% Similarity=0.222 Sum_probs=98.0
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC--------ccccCceEEEEcCCc-hhhhccHHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--------PDRRRKMMIACTQPR-RVAAMSVSRRVA 137 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~--------~~~~~~~~i~~t~p~-~~~~~~v~~~v~ 137 (688)
+..|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++.+. .....++.+++.
T Consensus 34 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~ 113 (289)
T PRK13645 34 FKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIA 113 (289)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHH
Confidence 5689999999999999999987432 22221110 001224556676653 122235666554
Q ss_pred Hhh---cccc---cceeceeeeeccc--ccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHH
Q 005605 138 EEM---DVTI---GEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (688)
Q Consensus 138 ~~~---~~~~---~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l 207 (688)
... +... ...+......-.. ...+..+..+|+|+.+++.++++++.+++++|||| +++|......+.+++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l 193 (289)
T PRK13645 114 FGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLF 193 (289)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 211 1000 0001000000011 11345667899999999999999999999999999 778888888888998
Q ss_pred HHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 208 KEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 208 ~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
+++.+.. +..+|+.||.++ ...+++.
T Consensus 194 ~~~~~~~-~~tiiiisH~~~~~~~~~d~ 220 (289)
T PRK13645 194 ERLNKEY-KKRIIMVTHNMDQVLRIADE 220 (289)
T ss_pred HHHHHhc-CCEEEEEecCHHHHHHhCCE
Confidence 8886643 678999999985 3455543
No 298
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.93 E-value=1.4e-09 Score=115.69 Aligned_cols=156 Identities=19% Similarity=0.306 Sum_probs=112.6
Q ss_pred HHhcCCEEEEEeCCCCChhcchhH-----------HHhcCccC--CCc--cccCceEEEEcCCchhhhccHHHHHHHhhc
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDI--ETP--DRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~-----------~ll~~~~~--~~~--~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (688)
.+..|++.++.|+||+||||++.. +.+++... .++ ....++.++.++......+++++++.-...
T Consensus 26 ~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e 105 (501)
T COG3845 26 SVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLE 105 (501)
T ss_pred eecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCc
Confidence 367899999999999999999863 22333211 111 123467899999999999999999865432
Q ss_pred ccccceece----------eeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHH
Q 005605 142 VTIGEEVGY----------SIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (688)
Q Consensus 142 ~~~~~~vg~----------~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~ 209 (688)
...+..++. ..++.-....+..+.-+|-|..||+.+-+.+..+.++||||| +.+-+...|.++.+++.
T Consensus 106 ~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~ 185 (501)
T COG3845 106 PSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRR 185 (501)
T ss_pred cccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 211111110 001111123456677899999999999999999999999999 77888889999999999
Q ss_pred HHhcCCCcEEEEecccc-cHHHHHch
Q 005605 210 VLKNRPDLKLVVMSATL-EAEKFQGY 234 (688)
Q Consensus 210 i~~~~~~~~vil~SAT~-~~~~~~~~ 234 (688)
+.+. +..+|++||-+ ++..+++.
T Consensus 186 l~~~--G~tIi~ITHKL~Ev~~iaDr 209 (501)
T COG3845 186 LAAE--GKTIIFITHKLKEVMAIADR 209 (501)
T ss_pred HHHC--CCEEEEEeccHHHHHHhhCe
Confidence 8776 88999999999 45666654
No 299
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.93 E-value=2e-09 Score=121.22 Aligned_cols=155 Identities=14% Similarity=0.200 Sum_probs=101.2
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc----cccCceEEEEcCCchhhhccHHHHHHHhhc-
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP----DRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~----~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (688)
+.+|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+......++.+++.....
T Consensus 21 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 100 (491)
T PRK10982 21 VRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYP 100 (491)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhccccc
Confidence 5689999999999999999987432 222111110 012346677777765566788777653210
Q ss_pred c-cc--c-----ceec-eeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHH
Q 005605 142 V-TI--G-----EEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (688)
Q Consensus 142 ~-~~--~-----~~vg-~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i 210 (688)
. .. . ..+. ....+.-....+..+..+|+|+.+++.++++++.+++++|+|| +++|......+..+++++
T Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l 180 (491)
T PRK10982 101 TKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKL 180 (491)
T ss_pred ccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 0 00 0 0000 0000000112345677899999999999999999999999999 778888888888888887
Q ss_pred HhcCCCcEEEEeccccc-HHHHHch
Q 005605 211 LKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 211 ~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
.+. +..+|+.||.++ ...++++
T Consensus 181 ~~~--g~tvii~tH~~~~~~~~~d~ 203 (491)
T PRK10982 181 KER--GCGIVYISHKMEEIFQLCDE 203 (491)
T ss_pred HhC--CCEEEEEecCHHHHHHhCCE
Confidence 543 678999999985 3445543
No 300
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.93 E-value=1.3e-09 Score=113.51 Aligned_cols=150 Identities=23% Similarity=0.300 Sum_probs=97.8
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc-------cccCceEEEEcCCc-hhhhccHHHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP-------DRRRKMMIACTQPR-RVAAMSVSRRVAE 138 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~-------~~~~~~~i~~t~p~-~~~~~~v~~~v~~ 138 (688)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+. .....++.+++..
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~ 109 (280)
T PRK13649 30 IEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAF 109 (280)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHHHHHHH
Confidence 5689999999999999999987432 222211110 01224566776652 2223467776642
Q ss_pred hh---ccc----------ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHH
Q 005605 139 EM---DVT----------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (688)
Q Consensus 139 ~~---~~~----------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~l 203 (688)
.. +.. +...+|.. ....+..+..+|+|+.+++.++++++.+++++|+|| +++|......+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~~l~-----~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 184 (280)
T PRK13649 110 GPQNFGVSQEEAEALAREKLALVGIS-----ESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKEL 184 (280)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCC-----hhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 21 100 00111110 011245677899999999999999999999999999 77888888888
Q ss_pred HHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 204 FGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 204 l~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
..+++.+.+. +..+|+.||.++ ...++++
T Consensus 185 ~~~l~~~~~~--~~tiiivsH~~~~~~~~~d~ 214 (280)
T PRK13649 185 MTLFKKLHQS--GMTIVLVTHLMDDVANYADF 214 (280)
T ss_pred HHHHHHHHHC--CCEEEEEeccHHHHHHhCCE
Confidence 8888887543 678999999885 3455543
No 301
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.92 E-value=5.8e-10 Score=110.11 Aligned_cols=155 Identities=19% Similarity=0.238 Sum_probs=109.9
Q ss_pred cCCEEEEEeCCCCChhcchhHH-----------HhcCccCCC-------ccccCceEEEEcCCchhhhccHHHHHHHhhc
Q 005605 80 ANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET-------PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (688)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~-----------ll~~~~~~~-------~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (688)
...++.+-|++||||||++..+ .+++.-+.. +...+.++++++.-+....++|..++.-.+.
T Consensus 23 ~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~ 102 (352)
T COG4148 23 ARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMW 102 (352)
T ss_pred CCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhc
Confidence 3378999999999999998732 122211110 2234577889988888899999888865543
Q ss_pred ccccceeceeeeeccc-ccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcE
Q 005605 142 VTIGEEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLK 218 (688)
Q Consensus 142 ~~~~~~vg~~~~~~~~-~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~ 218 (688)
..........+..-.. ...+..+..+|+|..+|+.+++++|..|+++.+|| +-+|..-...++..++++.++. ++.
T Consensus 103 ~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~-~IP 181 (352)
T COG4148 103 KSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEI-NIP 181 (352)
T ss_pred ccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhc-CCC
Confidence 2211111110000011 22456777899999999999999999999999999 6666677778999999988776 889
Q ss_pred EEEecccc-cHHHHHchh
Q 005605 219 LVVMSATL-EAEKFQGYF 235 (688)
Q Consensus 219 vil~SAT~-~~~~~~~~~ 235 (688)
++.+||.+ ++..++++.
T Consensus 182 IlYVSHS~~Ev~RLAd~v 199 (352)
T COG4148 182 ILYVSHSLDEVLRLADRV 199 (352)
T ss_pred EEEEecCHHHHHhhhheE
Confidence 99999999 567788764
No 302
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.92 E-value=2.1e-09 Score=111.30 Aligned_cols=144 Identities=22% Similarity=0.277 Sum_probs=94.0
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC---ccccCceEEEEcCCc-hhhhccHHHHHHHhhc-
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPR-RVAAMSVSRRVAEEMD- 141 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~~- 141 (688)
+.+|+.++|.|+|||||||++..+. +++.++.. ....+.+.+++++|. .....++.+++.....
T Consensus 32 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~ 111 (269)
T PRK13648 32 IPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLEN 111 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHh
Confidence 5699999999999999999987432 22211111 011234566777663 2333344444422110
Q ss_pred ------------ccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHH
Q 005605 142 ------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (688)
Q Consensus 142 ------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l 207 (688)
..+...+|.. ...+..+..+|+|+.+++.++++++.+++++|+|| ++.|......+..++
T Consensus 112 ~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L 185 (269)
T PRK13648 112 HAVPYDEMHRRVSEALKQVDML------ERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLV 185 (269)
T ss_pred cCCCHHHHHHHHHHHHHHcCCc------hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 0011111211 12345667899999999999999999999999999 677777788888888
Q ss_pred HHHHhcCCCcEEEEecccccH
Q 005605 208 KEVLKNRPDLKLVVMSATLEA 228 (688)
Q Consensus 208 ~~i~~~~~~~~vil~SAT~~~ 228 (688)
+++.+.. +..+|++||.++.
T Consensus 186 ~~~~~~~-~~tiiivtH~~~~ 205 (269)
T PRK13648 186 RKVKSEH-NITIISITHDLSE 205 (269)
T ss_pred HHHHHhc-CCEEEEEecCchH
Confidence 8875543 5789999998753
No 303
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.92 E-value=1.8e-09 Score=111.64 Aligned_cols=150 Identities=20% Similarity=0.294 Sum_probs=94.0
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC--c-cccCceEEEEcCCch--hhhccHHHHHHHhhc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--P-DRRRKMMIACTQPRR--VAAMSVSRRVAEEMD 141 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~--~-~~~~~~~i~~t~p~~--~~~~~v~~~v~~~~~ 141 (688)
+.+|+.++|+|+|||||||++..+. +++.++.. . ...+.+.++++++.. ....++.+.+.....
T Consensus 36 i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 115 (267)
T PRK15112 36 LREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLR 115 (267)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHH
Confidence 5689999999999999999887432 22211111 0 011245666766531 122233333321100
Q ss_pred --------------ccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHH
Q 005605 142 --------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (688)
Q Consensus 142 --------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ 205 (688)
..+...+|.. ....+..+..+|+|+.+++.++++++.+++++|||| +++|......+.+
T Consensus 116 ~~~~~~~~~~~~~~~~~l~~~~l~-----~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~ 190 (267)
T PRK15112 116 LNTDLEPEQREKQIIETLRQVGLL-----PDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLIN 190 (267)
T ss_pred hccCCCHHHHHHHHHHHHHHcCCC-----hHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHH
Confidence 0011112210 011234567899999999999999999999999999 7777777888888
Q ss_pred HHHHHHhcCCCcEEEEeccccc-HHHHHc
Q 005605 206 LLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 206 ~l~~i~~~~~~~~vil~SAT~~-~~~~~~ 233 (688)
+++++.+.. +..+|++||.++ ...+++
T Consensus 191 ~l~~~~~~~-g~tviivsH~~~~~~~~~d 218 (267)
T PRK15112 191 LMLELQEKQ-GISYIYVTQHLGMMKHISD 218 (267)
T ss_pred HHHHHHHHc-CcEEEEEeCCHHHHHHhcC
Confidence 888876543 578999999874 333443
No 304
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.92 E-value=1.9e-09 Score=111.67 Aligned_cols=149 Identities=16% Similarity=0.268 Sum_probs=95.5
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCC--Cc---cccCceEEEEcCCch-hhhccHHHHHHHhh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIE--TP---DRRRKMMIACTQPRR-VAAMSVSRRVAEEM 140 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~--~~---~~~~~~~i~~t~p~~-~~~~~v~~~v~~~~ 140 (688)
+..|+.++|+|+|||||||++..+. +++.++. .. ...+.+.++++.+.. ....++.+++....
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~ 103 (271)
T PRK13638 24 FSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSL 103 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHH
Confidence 5689999999999999999987432 2222111 00 011245666766532 12233444443211
Q ss_pred ---cc----------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHH
Q 005605 141 ---DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (688)
Q Consensus 141 ---~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ 205 (688)
+. .....+|.. ...+..+..+|+|+.+++.++++++.+++++|+|| ++.|......+..
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~ 177 (271)
T PRK13638 104 RNLGVPEAEITRRVDEALTLVDAQ------HFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIA 177 (271)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCH------hHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 10 001111110 11245667899999999999999999999999999 7777788888899
Q ss_pred HHHHHHhcCCCcEEEEecccccH-HHHHch
Q 005605 206 LLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (688)
Q Consensus 206 ~l~~i~~~~~~~~vil~SAT~~~-~~~~~~ 234 (688)
+++++.+. +..+|++||.++. ..+++.
T Consensus 178 ~l~~~~~~--g~tii~vtH~~~~~~~~~d~ 205 (271)
T PRK13638 178 IIRRIVAQ--GNHVIISSHDIDLIYEISDA 205 (271)
T ss_pred HHHHHHHC--CCEEEEEeCCHHHHHHhCCE
Confidence 99887643 6789999999853 445543
No 305
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.92 E-value=1.5e-09 Score=125.38 Aligned_cols=151 Identities=23% Similarity=0.297 Sum_probs=103.6
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc------cccCceEEEEcCCc--hhhhccHHHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP------DRRRKMMIACTQPR--RVAAMSVSRRVAE 138 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~------~~~~~~~i~~t~p~--~~~~~~v~~~v~~ 138 (688)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.|. ....+++.+++..
T Consensus 347 i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~ 426 (623)
T PRK10261 347 LWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIME 426 (623)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHH
Confidence 6789999999999999999987443 222212110 01234677887763 3345677777654
Q ss_pred hhcc--------------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHH
Q 005605 139 EMDV--------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (688)
Q Consensus 139 ~~~~--------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ 202 (688)
.... .+...+|.. ....+..+..+|+|+++|+.++++++.++++||+|| +++|......
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~L~~~gL~-----~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~ 501 (623)
T PRK10261 427 PLRVHGLLPGKAAAARVAWLLERVGLL-----PEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQ 501 (623)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHcCCC-----HHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 3210 001111210 012356678899999999999999999999999999 7788888888
Q ss_pred HHHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 203 LFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 203 ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
++++++++.+.. +..+|++||.++ +..+++.
T Consensus 502 i~~ll~~l~~~~-g~tvi~isHdl~~v~~~~dr 533 (623)
T PRK10261 502 IINLLLDLQRDF-GIAYLFISHDMAVVERISHR 533 (623)
T ss_pred HHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCE
Confidence 999999987654 678999999985 3455543
No 306
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.91 E-value=3.4e-09 Score=97.34 Aligned_cols=150 Identities=22% Similarity=0.275 Sum_probs=103.4
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHH-----------HhcCccCCC-------ccccCceEEEEcCCchhhhccHHHHHHH
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET-------PDRRRKMMIACTQPRRVAAMSVSRRVAE 138 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~-----------ll~~~~~~~-------~~~~~~~~i~~t~p~~~~~~~v~~~v~~ 138 (688)
.+..|+.+.|+||+||||||++... .+.+.++.+ .-..+.+.++++.-..+..++..++++-
T Consensus 32 ~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~l 111 (228)
T COG4181 32 VVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVAL 111 (228)
T ss_pred EecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccc
Confidence 3678999999999999999987621 111111211 1123456788887777778888888753
Q ss_pred hhc-------------ccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHH
Q 005605 139 EMD-------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (688)
Q Consensus 139 ~~~-------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~l 203 (688)
... ......||...| ....+..+|+|..+|+.+++++...|++++-|| -.+|....+.+
T Consensus 112 PleL~ge~~~~~~~~A~~lL~~vGLg~R------l~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~i 185 (228)
T COG4181 112 PLELRGESSADSRAGAKALLEAVGLGKR------LTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKI 185 (228)
T ss_pred hhhhcCCccccHHHHHHHHHHHhCcccc------cccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHH
Confidence 221 122334554432 234456799999999999999999999999999 33444555667
Q ss_pred HHHHHHHHhcCCCcEEEEecccccHHHHHc
Q 005605 204 FGLLKEVLKNRPDLKLVVMSATLEAEKFQG 233 (688)
Q Consensus 204 l~~l~~i~~~~~~~~vil~SAT~~~~~~~~ 233 (688)
.+++-.+.+.+ +..+++++|+.....-|+
T Consensus 186 aDLlF~lnre~-G~TlVlVTHD~~LA~Rc~ 214 (228)
T COG4181 186 ADLLFALNRER-GTTLVLVTHDPQLAARCD 214 (228)
T ss_pred HHHHHHHhhhc-CceEEEEeCCHHHHHhhh
Confidence 77777776666 889999999876555443
No 307
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.91 E-value=5.5e-09 Score=100.41 Aligned_cols=118 Identities=21% Similarity=0.257 Sum_probs=81.2
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhcccccceeceeeeecc
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFED 156 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~ 156 (688)
.+.+|+.++|+|+|||||||++..+. +. ... . .+- |.... ..++|....
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~--Gl-~~p-~--~G~-i~~~g----------------------~~i~~~~q~-- 69 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILA--GQ-LIP-N--GDN-DEWDG----------------------ITPVYKPQY-- 69 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHH--cC-CCC-C--CcE-EEECC----------------------EEEEEEccc--
Confidence 56899999999999999999988533 32 111 0 111 11110 012332110
Q ss_pred cccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEecccccH-HHHHc
Q 005605 157 CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (688)
Q Consensus 157 ~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~~-~~~~~ 233 (688)
. .+|.|+.+++.+++.++.+++++++|| ++.+......+.+.+.++.+.. +..+|+.||.++. ..+++
T Consensus 70 -------~-~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~-~~tiiivsH~~~~~~~~~d 140 (177)
T cd03222 70 -------I-DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEG-KKTALVVEHDLAVLDYLSD 140 (177)
T ss_pred -------C-CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcC-CCEEEEEECCHHHHHHhCC
Confidence 0 199999999999999999999999999 6777777777888888875542 3689999999853 44554
Q ss_pred h
Q 005605 234 Y 234 (688)
Q Consensus 234 ~ 234 (688)
.
T Consensus 141 ~ 141 (177)
T cd03222 141 R 141 (177)
T ss_pred E
Confidence 3
No 308
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.91 E-value=2.2e-09 Score=121.32 Aligned_cols=155 Identities=19% Similarity=0.284 Sum_probs=102.1
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHh-------------cCccCCCcc----ccCceEEEEcCCchhhhccHHHHHHHhh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVL-------------EGVDIETPD----RRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll-------------~~~~~~~~~----~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (688)
+..|+.++|+|||||||||++..+.- ++.++.... ..+.+.++++.+......++.+++....
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 107 (506)
T PRK13549 28 VRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGN 107 (506)
T ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcc
Confidence 56899999999999999999874321 111111000 1234677787776555667777765321
Q ss_pred ccc----cc-----ceec-eeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHH
Q 005605 141 DVT----IG-----EEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (688)
Q Consensus 141 ~~~----~~-----~~vg-~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~ 208 (688)
... .. ..+. +...+.-....+..+..+|+|+++|+.++++++.+++++|||| +++|......+.++++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 187 (506)
T PRK13549 108 EITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIR 187 (506)
T ss_pred cccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 100 00 0000 0000000112355677899999999999999999999999999 7888888888999999
Q ss_pred HHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 209 EVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 209 ~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
++.+. +..+|+.||.++ ...+++.
T Consensus 188 ~l~~~--~~tvi~~tH~~~~~~~~~d~ 212 (506)
T PRK13549 188 DLKAH--GIACIYISHKLNEVKAISDT 212 (506)
T ss_pred HHHHC--CCEEEEEeCcHHHHHHhcCE
Confidence 88543 678999999985 3455543
No 309
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.91 E-value=2.6e-09 Score=103.72 Aligned_cols=155 Identities=15% Similarity=0.239 Sum_probs=103.7
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhc-----------CccCCCccccCceEEEEcCCchhhhccHHHHH---HHhhccc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLE-----------GVDIETPDRRRKMMIACTQPRRVAAMSVSRRV---AEEMDVT 143 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~-----------~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v---~~~~~~~ 143 (688)
+..|+..++.|+||+||||.|..++-- +.++.. .....++++|-.--...-+++.+.+ +..-+..
T Consensus 25 v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~-~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~ 103 (300)
T COG4152 25 VPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ-EIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMP 103 (300)
T ss_pred ecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh-hhhhhcccChhhhccCccCcHHHHHHHHHHhcCCc
Confidence 568999999999999999999865411 110100 0112334444333334455555554 3222211
Q ss_pred c---cceec-eeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCc
Q 005605 144 I---GEEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDL 217 (688)
Q Consensus 144 ~---~~~vg-~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~ 217 (688)
- ..... +..+++-......+|..+|-|..+.+-.-.+++.+|++||||| .++|+.++..+.+.+.++... +.
T Consensus 104 ~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~--Ga 181 (300)
T COG4152 104 KAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEE--GA 181 (300)
T ss_pred HHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhc--CC
Confidence 1 11111 1223333334567888999999999887778899999999999 789999999999999887665 78
Q ss_pred EEEEecccc-cHHHHHchh
Q 005605 218 KLVVMSATL-EAEKFQGYF 235 (688)
Q Consensus 218 ~vil~SAT~-~~~~~~~~~ 235 (688)
.+|+.||-| +++.+|+..
T Consensus 182 tIifSsH~Me~vEeLCD~l 200 (300)
T COG4152 182 TIIFSSHRMEHVEELCDRL 200 (300)
T ss_pred EEEEecchHHHHHHHhhhh
Confidence 899999999 688998764
No 310
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=98.90 E-value=1.9e-09 Score=114.50 Aligned_cols=142 Identities=23% Similarity=0.276 Sum_probs=96.6
Q ss_pred EEeCCCCChhcchhHHH-----------hcCccCCC-ccccCceEEEEcCCchhhhccHHHHHHHhhcc-----------
Q 005605 86 LVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV----------- 142 (688)
Q Consensus 86 i~g~TGSGKTt~~~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~----------- 142 (688)
|+|+|||||||++..+. +++.++.. ....+.+.++++.+.....+++.+++......
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 47999999999987432 22222211 11123567778777666667888887643210
Q ss_pred --cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcE
Q 005605 143 --TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLK 218 (688)
Q Consensus 143 --~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~ 218 (688)
.+...+|. ....+..+..+|+|+.+++.++++++.++++++||| +++|......+...++++.+.. +..
T Consensus 81 ~~~~l~~~~l------~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~-g~t 153 (325)
T TIGR01187 81 VLEALRLVQL------EEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL-GIT 153 (325)
T ss_pred HHHHHHHcCC------cchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc-CCE
Confidence 00111111 112355677899999999999999999999999999 6777777888888888876653 678
Q ss_pred EEEeccccc-HHHHHch
Q 005605 219 LVVMSATLE-AEKFQGY 234 (688)
Q Consensus 219 vil~SAT~~-~~~~~~~ 234 (688)
+|+.||.++ +..+++.
T Consensus 154 iiivTHd~~e~~~~~d~ 170 (325)
T TIGR01187 154 FVFVTHDQEEAMTMSDR 170 (325)
T ss_pred EEEEeCCHHHHHHhCCE
Confidence 999999984 3455543
No 311
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.90 E-value=1.9e-09 Score=111.67 Aligned_cols=71 Identities=20% Similarity=0.284 Sum_probs=58.9
Q ss_pred cccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHc
Q 005605 161 RTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 161 ~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~ 233 (688)
++.+..+|+|+.+++.++++++.+++++|+|| +++|......+.++++.+.+. +..+|+.||.++ ...+++
T Consensus 137 ~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~--g~tviivsH~~~~~~~~~d 210 (272)
T PRK15056 137 HRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDE--GKTMLVSTHNLGSVTEFCD 210 (272)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCC
Confidence 45667799999999999999999999999999 777778888888998887543 678999999884 345554
No 312
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.90 E-value=3.3e-09 Score=109.65 Aligned_cols=151 Identities=21% Similarity=0.271 Sum_probs=96.2
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc------cccCceEEEEcCCc--hhhhccHHHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP------DRRRKMMIACTQPR--RVAAMSVSRRVAE 138 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~------~~~~~~~i~~t~p~--~~~~~~v~~~v~~ 138 (688)
+.+|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+. .....++.+.+..
T Consensus 35 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~ 114 (268)
T PRK10419 35 LKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIRE 114 (268)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHH
Confidence 5689999999999999999987432 111111100 01234566666652 1123444444321
Q ss_pred hh----c----------ccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHH
Q 005605 139 EM----D----------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (688)
Q Consensus 139 ~~----~----------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ 202 (688)
.. + ..+...+|+.. ...+..+..+|+|+.+++.++++++.+++++|+|| +++|....+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~ 189 (268)
T PRK10419 115 PLRHLLSLDKAERLARASEMLRAVDLDD-----SVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAG 189 (268)
T ss_pred HHHhhccCCHHHHHHHHHHHHHHcCCCh-----hHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHH
Confidence 10 0 01111122110 11245666799999999999999999999999999 7777777888
Q ss_pred HHHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 203 LFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 203 ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
+.++++.+.+.. +..+|++||..+ ...+++.
T Consensus 190 ~~~~l~~~~~~~-~~tiiivsH~~~~i~~~~d~ 221 (268)
T PRK10419 190 VIRLLKKLQQQF-GTACLFITHDLRLVERFCQR 221 (268)
T ss_pred HHHHHHHHHHHc-CcEEEEEECCHHHHHHhCCE
Confidence 888888876643 678999999985 3445553
No 313
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.89 E-value=2.8e-09 Score=108.55 Aligned_cols=148 Identities=15% Similarity=0.191 Sum_probs=93.1
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhc-------------CccCCCc---c-ccCceEEEEcCCchhhhccHHHHHHHhh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLE-------------GVDIETP---D-RRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~-------------~~~~~~~---~-~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (688)
+..|+.++|+|+|||||||++..+.-. +.+.... . ....+.++++.+......++.+.+....
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~ 102 (243)
T TIGR01978 23 VKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSAL 102 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHH
Confidence 578999999999999999998754311 0000000 0 0112455666665555556665553221
Q ss_pred cccc-------------cceeceeeeecccc--ccccccc-ccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHH
Q 005605 141 DVTI-------------GEEVGYSIRFEDCS--SARTVLK-YLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (688)
Q Consensus 141 ~~~~-------------~~~vg~~~~~~~~~--~~~~~i~-~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ 202 (688)
.... ...+.-....-... ..+..+. .+|+|+.+++.++++++.+++++|+|| ++.|......
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~ 182 (243)
T TIGR01978 103 NARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKI 182 (243)
T ss_pred HHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHH
Confidence 1000 00000000000011 1233454 499999999999999999999999999 7888888888
Q ss_pred HHHHHHHHHhcCCCcEEEEeccccc
Q 005605 203 LFGLLKEVLKNRPDLKLVVMSATLE 227 (688)
Q Consensus 203 ll~~l~~i~~~~~~~~vil~SAT~~ 227 (688)
+..+++++.+. +..+|+.||.++
T Consensus 183 l~~~l~~~~~~--~~tvi~vsH~~~ 205 (243)
T TIGR01978 183 VAEGINRLREP--DRSFLIITHYQR 205 (243)
T ss_pred HHHHHHHHHHC--CcEEEEEEecHH
Confidence 99999887543 578999999885
No 314
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.89 E-value=2.5e-09 Score=109.73 Aligned_cols=150 Identities=20% Similarity=0.292 Sum_probs=94.8
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCcc-----CCC--cc-----ccCceEEEEcCCch--hhhccH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVD-----IET--PD-----RRRKMMIACTQPRR--VAAMSV 132 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~-----~~~--~~-----~~~~~~i~~t~p~~--~~~~~v 132 (688)
+.+|+.++|.|+|||||||++.... +++.+ +.. .. ..+.+.++++.+.. ....++
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 105 (253)
T TIGR02323 26 LYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSA 105 (253)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCccccH
Confidence 5789999999999999999887322 22211 110 00 01235666666531 122333
Q ss_pred HHHHHHhh---c-----------ccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcC
Q 005605 133 SRRVAEEM---D-----------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHER 196 (688)
Q Consensus 133 ~~~v~~~~---~-----------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher 196 (688)
.+++.... . ..+...+|.. ....+..+..+|+|+.+++.++++++.+++++++|| +++|
T Consensus 106 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-----~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD 180 (253)
T TIGR02323 106 GANIGERLMAIGARHYGNIRAAAHDWLEEVEID-----PTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLD 180 (253)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHcCCC-----hhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 33432211 0 0001111110 012345667899999999999999999999999999 7888
Q ss_pred hhhHHHHHHHHHHHHhcCCCcEEEEecccccH-HHHHc
Q 005605 197 TLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (688)
Q Consensus 197 ~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~~-~~~~~ 233 (688)
......++++++++.+.. +..+|+.||.++. ..+++
T Consensus 181 ~~~~~~l~~~l~~~~~~~-~~tii~vsH~~~~~~~~~d 217 (253)
T TIGR02323 181 VSVQARLLDLLRGLVRDL-GLAVIIVTHDLGVARLLAQ 217 (253)
T ss_pred HHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcC
Confidence 888888889888876543 6789999998853 33444
No 315
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.89 E-value=1.1e-09 Score=109.91 Aligned_cols=150 Identities=19% Similarity=0.230 Sum_probs=92.9
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhc-----------CccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhcc-
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLE-----------GVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~-----------~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (688)
+.+|+.++|+||+||||||++..+.-. +.++.. ....+.+.++++.+.... .++.+++......
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~ 105 (220)
T cd03245 27 IRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAPLA 105 (220)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCCCC
Confidence 578999999999999999998744311 110100 001123556666654333 4666665321100
Q ss_pred ------cccceeceeeeeccc-----ccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHH
Q 005605 143 ------TIGEEVGYSIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (688)
Q Consensus 143 ------~~~~~vg~~~~~~~~-----~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~ 209 (688)
......|.....+.. ......+..+|+|+++++.++++++.+++++|+|| +++|....+.+.+++++
T Consensus 106 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 185 (220)
T cd03245 106 DDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQ 185 (220)
T ss_pred CHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 001111111000000 00112345799999999999999999999999999 78888888888888888
Q ss_pred HHhcCCCcEEEEecccccHHHH
Q 005605 210 VLKNRPDLKLVVMSATLEAEKF 231 (688)
Q Consensus 210 i~~~~~~~~vil~SAT~~~~~~ 231 (688)
+.+ +..+|+.||.++...+
T Consensus 186 ~~~---~~tii~~sH~~~~~~~ 204 (220)
T cd03245 186 LLG---DKTLIIITHRPSLLDL 204 (220)
T ss_pred hcC---CCEEEEEeCCHHHHHh
Confidence 743 3688999999864333
No 316
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.89 E-value=3.2e-09 Score=119.80 Aligned_cols=148 Identities=22% Similarity=0.277 Sum_probs=100.6
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc----cccCceEEEEcCCchhhhccHHHHHHHhhcc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP----DRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~----~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (688)
+.+|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+......++.+++......
T Consensus 27 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 106 (501)
T PRK11288 27 CRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLP 106 (501)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccc
Confidence 5689999999999999999987432 111111100 0123466777776555556777776542100
Q ss_pred ----------------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHH
Q 005605 143 ----------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (688)
Q Consensus 143 ----------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll 204 (688)
.....+|. ....+..+..+|+|+.+++.++++++.+++++|+|| +++|......+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~l------~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~ 180 (501)
T PRK11288 107 HKGGIVNRRLLNYEAREQLEHLGV------DIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLF 180 (501)
T ss_pred cccCCCCHHHHHHHHHHHHHHcCC------CCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHH
Confidence 00011111 012345667899999999999999999999999999 788888888899
Q ss_pred HHHHHHHhcCCCcEEEEeccccc-HHHHHc
Q 005605 205 GLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 205 ~~l~~i~~~~~~~~vil~SAT~~-~~~~~~ 233 (688)
++++++.+. +..+|+.||.++ ...+++
T Consensus 181 ~~l~~~~~~--g~tiiiitHd~~~~~~~~d 208 (501)
T PRK11288 181 RVIRELRAE--GRVILYVSHRMEEIFALCD 208 (501)
T ss_pred HHHHHHHhC--CCEEEEEeCCHHHHHHhCC
Confidence 999887543 678999999985 344444
No 317
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.89 E-value=4.8e-09 Score=101.71 Aligned_cols=141 Identities=18% Similarity=0.322 Sum_probs=86.9
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCc-hhhhccHHHHHHHhhcccccceeceeeeecc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPR-RVAAMSVSRRVAEEMDVTIGEEVGYSIRFED 156 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~ 156 (688)
+.+|+.++|.|++||||||++..+. +. ... . .+-+.+--++. ..........+.... .+...+|..
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~--G~-~~~-~--~G~v~~~g~~~~~~~~~~~~~~i~~~~--q~l~~~gl~----- 88 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLA--GL-LKP-S--SGEILLDGKDLASLSPKELARKIAYVP--QALELLGLA----- 88 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHh--CC-CCC-C--CcEEEECCEECCcCCHHHHHHHHhHHH--HHHHHcCCH-----
Confidence 5689999999999999999987643 22 111 0 12111111110 000000111111000 011222221
Q ss_pred cccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEecccccH-HHHHc
Q 005605 157 CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (688)
Q Consensus 157 ~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~~-~~~~~ 233 (688)
...+..+..+|+|+.+++.++++++.+++++|+|| ++.|....+.+..+++.+.++. +..+|+.||.++. ..+++
T Consensus 89 -~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~-~~tiii~sh~~~~~~~~~d 166 (180)
T cd03214 89 -HLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARER-GKTVVMVLHDLNLAARYAD 166 (180)
T ss_pred -hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCC
Confidence 11234566799999999999999999999999999 6777778888888888876542 5688999998853 45554
No 318
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.88 E-value=5.9e-09 Score=105.09 Aligned_cols=152 Identities=20% Similarity=0.305 Sum_probs=95.5
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhcC-----c-----------cCCCc-----cccCceEEEEcCCchhhhccHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLEG-----V-----------DIETP-----DRRRKMMIACTQPRRVAAMSVSRRV 136 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~-----~-----------~~~~~-----~~~~~~~i~~t~p~~~~~~~v~~~v 136 (688)
+.+|+.++|+|+|||||||++..+.-.. . ++... ...+.+.++++.+... ..++.+++
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l 101 (227)
T cd03260 23 IPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNV 101 (227)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHH
Confidence 5689999999999999999987433111 0 00000 0122456677766554 56777776
Q ss_pred HHhhccc-------ccceeceeeeecccc-ccccc--ccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHH
Q 005605 137 AEEMDVT-------IGEEVGYSIRFEDCS-SARTV--LKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (688)
Q Consensus 137 ~~~~~~~-------~~~~vg~~~~~~~~~-~~~~~--i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll 204 (688)
....... ....+......-... ..... +..+|+|+.+++.++++++.+++++|+|| +++|......+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~ 181 (227)
T cd03260 102 AYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIE 181 (227)
T ss_pred HhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH
Confidence 4321100 000000000000011 11233 47899999999999999999999999999 677777888888
Q ss_pred HHHHHHHhcCCCcEEEEeccccc-HHHHHc
Q 005605 205 GLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 205 ~~l~~i~~~~~~~~vil~SAT~~-~~~~~~ 233 (688)
++++++.+. ..+|+.||.++ ...+++
T Consensus 182 ~~l~~~~~~---~tii~~sH~~~~~~~~~d 208 (227)
T cd03260 182 ELIAELKKE---YTIVIVTHNMQQAARVAD 208 (227)
T ss_pred HHHHHHhhC---cEEEEEeccHHHHHHhCC
Confidence 888887543 67899999885 344444
No 319
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.88 E-value=3e-09 Score=109.36 Aligned_cols=151 Identities=21% Similarity=0.294 Sum_probs=96.3
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCcc-----CCCc--c-----ccCceEEEEcCCch--hhhccH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVD-----IETP--D-----RRRKMMIACTQPRR--VAAMSV 132 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~-----~~~~--~-----~~~~~~i~~t~p~~--~~~~~v 132 (688)
+.+|+.++|.|+|||||||++..+. +++.+ +... . ..+.+.++++++.. ....++
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~ 108 (258)
T PRK11701 29 LYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSA 108 (258)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccH
Confidence 6799999999999999999987432 22221 1110 0 01245677777632 122333
Q ss_pred HHHHHHhh---cc-----------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcC
Q 005605 133 SRRVAEEM---DV-----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHER 196 (688)
Q Consensus 133 ~~~v~~~~---~~-----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher 196 (688)
.+++.... +. .+...+|.. ....+..+..+|+|+.+++.++++++.+++++|+|| +++|
T Consensus 109 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD 183 (258)
T PRK11701 109 GGNIGERLMAVGARHYGDIRATAGDWLERVEID-----AARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLD 183 (258)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCC-----hhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 43433211 00 001111110 012345677899999999999999999999999999 7777
Q ss_pred hhhHHHHHHHHHHHHhcCCCcEEEEecccccH-HHHHch
Q 005605 197 TLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (688)
Q Consensus 197 ~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~~-~~~~~~ 234 (688)
......+..+++.+.+.. +..+|+.||.++. ..++++
T Consensus 184 ~~~~~~l~~~l~~~~~~~-~~tii~isH~~~~~~~~~d~ 221 (258)
T PRK11701 184 VSVQARLLDLLRGLVREL-GLAVVIVTHDLAVARLLAHR 221 (258)
T ss_pred HHHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHhcCE
Confidence 777778888888876543 6789999999853 445554
No 320
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.88 E-value=4.7e-08 Score=110.27 Aligned_cols=163 Identities=21% Similarity=0.260 Sum_probs=94.3
Q ss_pred CCChHHHHHHHHHHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhh-ccc
Q 005605 65 LPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEM-DVT 143 (688)
Q Consensus 65 lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~-~~~ 143 (688)
+.+...|.+.+..+..++-++|++||-+|||-.-+ +.++.. +... ..+ +++..-|.....-+++..+-... ...
T Consensus 510 F~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisf-Y~iEKV-LRes--D~~-VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 510 FCPDEWQRELLDSVDRNESAVIVAPTSAGKTFISF-YAIEKV-LRES--DSD-VVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred cCCcHHHHHHhhhhhcccceEEEeeccCCceeccH-HHHHHH-Hhhc--CCC-EEEEecchHHHhhhhhHHHHHhhccCc
Confidence 45567899999999999999999999999996432 333332 1111 113 34444555444444444442222 111
Q ss_pred c--c-ceeceeeeecccccccccccccCHHHHHHHHhccc----cccCCcEEeecccCcChhhHH-HHHHHHHHHHhcCC
Q 005605 144 I--G-EEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDP----LLERYKVIVLDEAHERTLATD-VLFGLLKEVLKNRP 215 (688)
Q Consensus 144 ~--~-~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~----ll~~~~~lIlDEaher~~~~d-~ll~~l~~i~~~~~ 215 (688)
. + ...|--.+.-+....++++.++-|..+.-++++.+ ...+++++|+||+|.-....| .+...+-.+ -
T Consensus 585 ~~rg~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~l----i 660 (1330)
T KOG0949|consen 585 FLRGVSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLL----I 660 (1330)
T ss_pred cccchhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHh----c
Confidence 1 1 11121111111123366777777888887777743 488999999999995322222 222222111 1
Q ss_pred CcEEEEecccc-cHHHHHchhc
Q 005605 216 DLKLVVMSATL-EAEKFQGYFY 236 (688)
Q Consensus 216 ~~~vil~SAT~-~~~~~~~~~~ 236 (688)
.+-++.+|||+ ++..+..|+.
T Consensus 661 ~CP~L~LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 661 PCPFLVLSATIGNPNLFQKWLN 682 (1330)
T ss_pred CCCeeEEecccCCHHHHHHHHH
Confidence 46789999999 7777777664
No 321
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.88 E-value=2.8e-09 Score=116.56 Aligned_cols=152 Identities=24% Similarity=0.338 Sum_probs=107.0
Q ss_pred HHhcCCEEEEEeCCCCChhcchhH-----------HHhcCcc--CCC---ccccCceEEEEcCCchh--hhccHHHHHHH
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGVD--IET---PDRRRKMMIACTQPRRV--AAMSVSRRVAE 138 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~-----------~ll~~~~--~~~---~~~~~~~~i~~t~p~~~--~~~~v~~~v~~ 138 (688)
.+.+|+.++|+|++||||||+... +.+++.+ ... ....+.+.++++.|-.. ..+++.+.+++
T Consensus 313 ~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~e 392 (539)
T COG1123 313 DLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAE 392 (539)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHh
Confidence 367999999999999999998763 2333322 111 01123566788877433 34566666655
Q ss_pred hhccc--------------ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHH
Q 005605 139 EMDVT--------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (688)
Q Consensus 139 ~~~~~--------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ 202 (688)
.+... +...||.. ....+..+..+|+|+.+|+.+++++..+|++||+|| ..+|......
T Consensus 393 pL~~~~~~~~~~~~~rv~~ll~~VgL~-----~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~ 467 (539)
T COG1123 393 PLRIHGGGSGAERRARVAELLELVGLP-----PEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQ 467 (539)
T ss_pred HHhhhcccchHHHHHHHHHHHHHcCCC-----HHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHH
Confidence 44321 12233332 112466788899999999999999999999999999 4566666777
Q ss_pred HHHHHHHHHhcCCCcEEEEecccccH-HHHHch
Q 005605 203 LFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (688)
Q Consensus 203 ll~~l~~i~~~~~~~~vil~SAT~~~-~~~~~~ 234 (688)
++++++++.++. +...+++||.+.. +.+++.
T Consensus 468 VlnLl~~lq~e~-g~t~lfISHDl~vV~~i~dr 499 (539)
T COG1123 468 VLNLLKDLQEEL-GLTYLFISHDLAVVRYIADR 499 (539)
T ss_pred HHHHHHHHHHHh-CCEEEEEeCCHHHHHhhCce
Confidence 899999998877 8999999999964 566654
No 322
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.87 E-value=3.6e-09 Score=106.42 Aligned_cols=156 Identities=21% Similarity=0.280 Sum_probs=98.7
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHH-----------hc--Cc--cCCC--cc-----ccCceEEEEcCCchhhhccHHH
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LE--GV--DIET--PD-----RRRKMMIACTQPRRVAAMSVSR 134 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~--~~--~~~~--~~-----~~~~~~i~~t~p~~~~~~~v~~ 134 (688)
.+.+|+.++|+|+|||||||++..+. ++ +. ++.. .. ..+.+.++++.+......++.+
T Consensus 30 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 109 (224)
T TIGR02324 30 TVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALE 109 (224)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHH
Confidence 35799999999999999999987432 11 10 1100 00 0124667777776555566666
Q ss_pred HHHHhh---ccc---ccceec-eeeeecccc-cccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHH
Q 005605 135 RVAEEM---DVT---IGEEVG-YSIRFEDCS-SARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (688)
Q Consensus 135 ~v~~~~---~~~---~~~~vg-~~~~~~~~~-~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll 204 (688)
++.... +.. ....+. ....+.-.. ..+..+..+|+|+.+++.++++++.+++++|+|| ++.|......+.
T Consensus 110 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~ 189 (224)
T TIGR02324 110 VVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVV 189 (224)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 654321 100 000000 000000001 1234567799999999999999999999999999 777777888888
Q ss_pred HHHHHHHhcCCCcEEEEecccccH-HHHHch
Q 005605 205 GLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (688)
Q Consensus 205 ~~l~~i~~~~~~~~vil~SAT~~~-~~~~~~ 234 (688)
++++.+.+. +..+|+.||..+. ..+++.
T Consensus 190 ~~l~~~~~~--g~tii~vsH~~~~~~~~~d~ 218 (224)
T TIGR02324 190 ELIAEAKAR--GAALIGIFHDEEVRELVADR 218 (224)
T ss_pred HHHHHHHhc--CCEEEEEeCCHHHHHHhcce
Confidence 888887543 6789999999753 345543
No 323
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=98.87 E-value=8.4e-09 Score=94.40 Aligned_cols=137 Identities=31% Similarity=0.312 Sum_probs=79.6
Q ss_pred CEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhcccccceeceeeeecccc---
Q 005605 82 QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCS--- 158 (688)
Q Consensus 82 ~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~--- 158 (688)
+.+++.|+||+|||+.+...+........ . ..+++..|......+..+.+...... ...+.+........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~---~--~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLK---G--GQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQE 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhccc---C--CCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHH
Confidence 35788999999999998876665432111 1 12444456666655555555544431 12222222111111
Q ss_pred ---cccccccccCHHHHHHHHhccc-cccCCcEEeecccCcChhhHHHHHHHHHHHHhcCCCcEEEEecccc
Q 005605 159 ---SARTVLKYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATL 226 (688)
Q Consensus 159 ---~~~~~i~~lT~G~l~~~~~~~~-ll~~~~~lIlDEaher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~ 226 (688)
.....+.++|.+.+.+...... .....+++|+||+|. ..................+..+++++|||+
T Consensus 74 ~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~-~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 74 KLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHR-LLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHH-HhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 2456777899998887766544 366889999999994 222222221122223334478899999995
No 324
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.87 E-value=2.4e-09 Score=106.29 Aligned_cols=140 Identities=24% Similarity=0.316 Sum_probs=92.5
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHh-----------cCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhccc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVL-----------EGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll-----------~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (688)
+.+|+.++|.|++||||||++..+.- ++.+... ....+.+.++++.+.... .++.+++.......
T Consensus 31 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~~~~ 109 (207)
T cd03369 31 VKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFDEYS 109 (207)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccC-ccHHHHhcccCCCC
Confidence 56899999999999999999874431 1111100 011234666777765443 47776663211100
Q ss_pred ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEE
Q 005605 144 IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVV 221 (688)
Q Consensus 144 ~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil 221 (688)
. ..+- ........+..+|+|+.+++.++++++.+++++|+|| ++.+....+.+.++++++. .+..+|+
T Consensus 110 ~-~~~~------~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~---~~~tiii 179 (207)
T cd03369 110 D-EEIY------GALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF---TNSTILT 179 (207)
T ss_pred H-HHHH------HHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc---CCCEEEE
Confidence 0 0000 0001245677899999999999999999999999999 6677777777888888762 2678999
Q ss_pred ecccccH
Q 005605 222 MSATLEA 228 (688)
Q Consensus 222 ~SAT~~~ 228 (688)
+||.++.
T Consensus 180 ~th~~~~ 186 (207)
T cd03369 180 IAHRLRT 186 (207)
T ss_pred EeCCHHH
Confidence 9998754
No 325
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.87 E-value=6.9e-09 Score=101.47 Aligned_cols=67 Identities=19% Similarity=0.257 Sum_probs=58.4
Q ss_pred ccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEecccc
Q 005605 160 ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATL 226 (688)
Q Consensus 160 ~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~ 226 (688)
.+.....+|-|+.++++++++++.+|.++|||| ..+|......++..+.++....+..+++++||-.
T Consensus 165 a~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~ 233 (257)
T COG1119 165 ADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA 233 (257)
T ss_pred ccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcch
Confidence 345566799999999999999999999999999 5677788888899999988877788999999976
No 326
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.87 E-value=2e-09 Score=108.72 Aligned_cols=147 Identities=18% Similarity=0.257 Sum_probs=91.9
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHh-----------cCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhccc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVL-----------EGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll-----------~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (688)
+..|+.++|+|++||||||++..+.- ++.++.. ....+.+.++++.+.... .++.+++.......
T Consensus 26 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~~~~~~~~~ 104 (229)
T cd03254 26 IKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFS-GTIMENIRLGRPNA 104 (229)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhh-hHHHHHHhccCCCC
Confidence 57899999999999999999874331 1111100 011223556666554333 36666554321100
Q ss_pred ----c---cceeceeeeecc-----cccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHH
Q 005605 144 ----I---GEEVGYSIRFED-----CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (688)
Q Consensus 144 ----~---~~~vg~~~~~~~-----~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~ 209 (688)
+ ...++.....+. .......+..+|+|+.+++.++++++.+++++|+|| +++|....+.+..+++.
T Consensus 105 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 184 (229)
T cd03254 105 TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEK 184 (229)
T ss_pred CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 0 000111000000 011233467899999999999999999999999999 77777888888888888
Q ss_pred HHhcCCCcEEEEecccccH
Q 005605 210 VLKNRPDLKLVVMSATLEA 228 (688)
Q Consensus 210 i~~~~~~~~vil~SAT~~~ 228 (688)
+. . +..+|+.||..+.
T Consensus 185 ~~-~--~~tii~~sh~~~~ 200 (229)
T cd03254 185 LM-K--GRTSIIIAHRLST 200 (229)
T ss_pred hc-C--CCEEEEEecCHHH
Confidence 73 2 6789999998854
No 327
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.87 E-value=2.2e-09 Score=108.98 Aligned_cols=147 Identities=16% Similarity=0.248 Sum_probs=93.0
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhc-c
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD-V 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-~ 142 (688)
+..|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++.+... ..++.+++..... .
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~~nl~~~~~~~ 103 (237)
T cd03252 25 IKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLF-NRSIRDNIALADPGM 103 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhc-cchHHHHhhccCCCC
Confidence 5689999999999999999987433 11111110 00123455666665433 3466666643211 0
Q ss_pred c---c---cceeceeeeecc-----cccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHH
Q 005605 143 T---I---GEEVGYSIRFED-----CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (688)
Q Consensus 143 ~---~---~~~vg~~~~~~~-----~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~ 209 (688)
. + ....+.....+. ....+..+..+|+|+.+++.++++++.+++++|+|| ++.|......+.++++.
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 183 (237)
T cd03252 104 SMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHD 183 (237)
T ss_pred CHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 0 0 000111000000 011234567899999999999999999999999999 77777888888888887
Q ss_pred HHhcCCCcEEEEecccccH
Q 005605 210 VLKNRPDLKLVVMSATLEA 228 (688)
Q Consensus 210 i~~~~~~~~vil~SAT~~~ 228 (688)
+. . +..+|+.||.++.
T Consensus 184 ~~-~--~~tiii~sH~~~~ 199 (237)
T cd03252 184 IC-A--GRTVIIIAHRLST 199 (237)
T ss_pred hc-C--CCEEEEEeCCHHH
Confidence 74 2 6789999998854
No 328
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.86 E-value=2.4e-09 Score=106.79 Aligned_cols=138 Identities=23% Similarity=0.239 Sum_probs=90.3
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhcc---HHHHHHHhhcccccceeceeee
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMS---VSRRVAEEMDVTIGEEVGYSIR 153 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~---v~~~v~~~~~~~~~~~vg~~~~ 153 (688)
.|.+|+.++++|++||||||+-..++--.. ... +- |.+. ...+..++ ..+++.+ +...||..
T Consensus 35 ~i~~ge~~glVGESG~GKSTlgr~i~~L~~-pt~-----G~-i~f~-g~~i~~~~~~~~~~~v~e-----lL~~Vgl~-- 99 (268)
T COG4608 35 SIKEGETLGLVGESGCGKSTLGRLILGLEE-PTS-----GE-ILFE-GKDITKLSKEERRERVLE-----LLEKVGLP-- 99 (268)
T ss_pred EEcCCCEEEEEecCCCCHHHHHHHHHcCcC-CCC-----ce-EEEc-CcchhhcchhHHHHHHHH-----HHHHhCCC--
Confidence 367999999999999999998765442111 111 11 2221 11111111 1112222 23344421
Q ss_pred ecccccccccccccCHHHHHHHHhccccccCCcEEeecccC--cChhhHHHHHHHHHHHHhcCCCcEEEEecccccH-HH
Q 005605 154 FEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAH--ERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EK 230 (688)
Q Consensus 154 ~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEah--er~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~~-~~ 230 (688)
.....+.++.+|+|+++|+.++++++.+++++|.||.- .|......++.+++++.+.. ++..+++||.+.+ ..
T Consensus 100 ---~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~-~lt~lFIsHDL~vv~~ 175 (268)
T COG4608 100 ---EEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEEL-GLTYLFISHDLSVVRY 175 (268)
T ss_pred ---HHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHh-CCeEEEEEEEHHhhhh
Confidence 12345678889999999999999999999999999932 33444567899999998876 8999999999964 34
Q ss_pred HHc
Q 005605 231 FQG 233 (688)
Q Consensus 231 ~~~ 233 (688)
+++
T Consensus 176 isd 178 (268)
T COG4608 176 ISD 178 (268)
T ss_pred hcc
Confidence 444
No 329
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.86 E-value=4.3e-09 Score=121.59 Aligned_cols=153 Identities=18% Similarity=0.292 Sum_probs=103.2
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccC----------CC-c-----c-ccCceEEEEcCCc--hh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDI----------ET-P-----D-RRRKMMIACTQPR--RV 127 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~----------~~-~-----~-~~~~~~i~~t~p~--~~ 127 (688)
+..|+.++|+|+|||||||++..+. +++..+ .. . . ..+.+.++++.|. ..
T Consensus 39 v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~ 118 (623)
T PRK10261 39 LQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLN 118 (623)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcC
Confidence 5689999999999999999987432 111100 00 0 0 0124677788762 33
Q ss_pred hhccHHHHHHHhhcc--------------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc-
Q 005605 128 AAMSVSRRVAEEMDV--------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE- 192 (688)
Q Consensus 128 ~~~~v~~~v~~~~~~--------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE- 192 (688)
..+++.+++...... .+...+|.. +.....+..+..+|+|+.+|++++++++.++++||+||
T Consensus 119 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~---~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEP 195 (623)
T PRK10261 119 PVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIP---EAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEP 195 (623)
T ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCC---ChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 456777777542210 011122221 00011345677899999999999999999999999999
Q ss_pred -cCcChhhHHHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 193 -AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 193 -aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
+++|......++.+++++.+.. +..+|+.||.++ +..+++.
T Consensus 196 t~~LD~~~~~~l~~ll~~l~~~~-g~tvi~itHdl~~~~~~adr 238 (623)
T PRK10261 196 TTALDVTIQAQILQLIKVLQKEM-SMGVIFITHDMGVVAEIADR 238 (623)
T ss_pred CCccCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCE
Confidence 7888888888999999987654 678999999985 4556654
No 330
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.86 E-value=3.4e-09 Score=121.83 Aligned_cols=147 Identities=21% Similarity=0.342 Sum_probs=95.5
Q ss_pred HHhcCCEEEEEeCCCCChhcchhH-----------HHhcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhcc
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~-----------~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (688)
.|..|+.++|+|++||||||++.. +.+++.++.. ...++.++++++++ .+..-++.++++.....
T Consensus 495 ~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~-~Lf~gSI~eNi~l~~p~ 573 (709)
T COG2274 495 EIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDP-FLFSGSIRENIALGNPE 573 (709)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccc-hhhcCcHHHHHhcCCCC
Confidence 467899999999999999999873 3445544433 22244555555544 45556777777532210
Q ss_pred c-------cc-----------ceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHH
Q 005605 143 T-------IG-----------EEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (688)
Q Consensus 143 ~-------~~-----------~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ 202 (688)
. .. .-.||.....+ .=.-+|+|+.+|++++++++.+|+++|||| ++.|......
T Consensus 574 ~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E------~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~ 647 (709)
T COG2274 574 ATDEEIIEAAQLAGAHEFIENLPMGYDTPVGE------GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAI 647 (709)
T ss_pred CCHHHHHHHHHHhCcHHHHHhccccccccccc------CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHH
Confidence 0 00 11233211111 112489999999999999999999999999 5666666666
Q ss_pred HHHHHHHHHhcCCCcEEEEecccccHHHHHc
Q 005605 203 LFGLLKEVLKNRPDLKLVVMSATLEAEKFQG 233 (688)
Q Consensus 203 ll~~l~~i~~~~~~~~vil~SAT~~~~~~~~ 233 (688)
+.+.+.++.. +..+|+++|-...-..++
T Consensus 648 I~~~L~~~~~---~~T~I~IaHRl~ti~~ad 675 (709)
T COG2274 648 ILQNLLQILQ---GRTVIIIAHRLSTIRSAD 675 (709)
T ss_pred HHHHHHHHhc---CCeEEEEEccchHhhhcc
Confidence 6666666643 568999999886554443
No 331
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.86 E-value=3.9e-09 Score=106.29 Aligned_cols=147 Identities=20% Similarity=0.252 Sum_probs=92.9
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhcc-
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (688)
+.+|+.++|+|++||||||++..+. +++.++.. ....+.+.++++++... ..++.+++......
T Consensus 37 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~-~~tv~~nl~~~~~~~ 115 (226)
T cd03248 37 LHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLF-ARSLQDNIAYGLQSC 115 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHH-hhhHHHHhccccCCC
Confidence 5789999999999999999987432 11111110 01123456666665433 34666665421110
Q ss_pred cc---c---ceece---eeee--cccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHH
Q 005605 143 TI---G---EEVGY---SIRF--EDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (688)
Q Consensus 143 ~~---~---~~vg~---~~~~--~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~ 209 (688)
.. . ...+. ...+ .-....+..+..+|+|+.+++.+++.++.+++++|+|| ++.|....+.+..+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 195 (226)
T cd03248 116 SFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYD 195 (226)
T ss_pred CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 00 0 00000 0000 00111345567899999999999999999999999999 77888888888888888
Q ss_pred HHhcCCCcEEEEecccccH
Q 005605 210 VLKNRPDLKLVVMSATLEA 228 (688)
Q Consensus 210 i~~~~~~~~vil~SAT~~~ 228 (688)
+.+ +..+|++||.++.
T Consensus 196 ~~~---~~tii~~sh~~~~ 211 (226)
T cd03248 196 WPE---RRTVLVIAHRLST 211 (226)
T ss_pred HcC---CCEEEEEECCHHH
Confidence 643 4688999999854
No 332
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.85 E-value=4.6e-09 Score=114.15 Aligned_cols=151 Identities=20% Similarity=0.298 Sum_probs=109.7
Q ss_pred HHhcCCEEEEEeCCCCChhcchhH-----------HHhcCccCC--Cc--cccCceEEEEcCCchhhhccHHHHHHHhhc
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIE--TP--DRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~-----------~ll~~~~~~--~~--~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (688)
.+..|++..++|+||+||||++.. +++++.... ++ ....++.++.+.......++|++++--...
T Consensus 30 ~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre 109 (500)
T COG1129 30 TVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGRE 109 (500)
T ss_pred EEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccc
Confidence 467899999999999999999873 334443221 11 123466677777777789999999843221
Q ss_pred cc-----------------ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHH
Q 005605 142 VT-----------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (688)
Q Consensus 142 ~~-----------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ 202 (688)
.. +...+|.. ...++.+..++.|+.|.+.+++++..+.++||||| +.+..-+++.
T Consensus 110 ~~~~~g~id~~~m~~~A~~~l~~lg~~------~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~ 183 (500)
T COG1129 110 PTRRFGLIDRKAMRRRARELLARLGLD------IDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETER 183 (500)
T ss_pred cccCCCccCHHHHHHHHHHHHHHcCCC------CChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 11 01111111 12566777899999999999999988999999999 6666778888
Q ss_pred HHHHHHHHHhcCCCcEEEEecccc-cHHHHHchh
Q 005605 203 LFGLLKEVLKNRPDLKLVVMSATL-EAEKFQGYF 235 (688)
Q Consensus 203 ll~~l~~i~~~~~~~~vil~SAT~-~~~~~~~~~ 235 (688)
++.+++++..+ +..+|++||-+ ++-.+++.+
T Consensus 184 Lf~~ir~Lk~~--Gv~ii~ISHrl~Ei~~i~Dri 215 (500)
T COG1129 184 LFDLIRRLKAQ--GVAIIYISHRLDEVFEIADRI 215 (500)
T ss_pred HHHHHHHHHhC--CCEEEEEcCcHHHHHHhcCEE
Confidence 99999998766 89999999998 456676654
No 333
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.85 E-value=3.7e-08 Score=114.15 Aligned_cols=102 Identities=11% Similarity=0.072 Sum_probs=70.4
Q ss_pred CCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHH---------------------HhhcccCCCCCC
Q 005605 279 SGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPA---------------------MQQKIFEPAPPP 337 (688)
Q Consensus 279 ~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~---------------------~r~~~~~~~~~g 337 (688)
.++.+||+.++..+..+++.|.+..... .+...+.++++...+ ....+.+.|+..
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~----~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~ 589 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEK----FEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKE 589 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccc----cCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCC
Confidence 5899999999999999988887643211 123445555543322 112455666542
Q ss_pred CCCCCCCceEEEEecCccccCcccCCeEEEE-cCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCc
Q 005605 338 SKEGGPPGRKIVVSTNIAETSLTIDGIVYVI-DPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPG 410 (688)
Q Consensus 338 ~~~~~~~~~kvlvaTniae~gi~i~~V~~VI-d~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G 410 (688)
...+|+|.+|..-||+|.|.+..++ | . |..-...+|-+||+=|. .+|
T Consensus 590 ------~~~~ilIVvdmllTGFDaP~l~tLyld--K------------------plk~h~LlQai~R~nR~~~~~ 638 (667)
T TIGR00348 590 ------ENPKLLIVVDMLLTGFDAPILNTLYLD--K------------------PLKYHGLLQAIARTNRIDGKD 638 (667)
T ss_pred ------CCceEEEEEcccccccCCCccceEEEe--c------------------cccccHHHHHHHHhccccCCC
Confidence 1569999999999999999997655 3 2 55556789999999995 443
No 334
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.85 E-value=4.3e-09 Score=119.10 Aligned_cols=155 Identities=15% Similarity=0.188 Sum_probs=99.8
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc----cccCceEEEEcCC---chhhhccHHHHHHHh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP----DRRRKMMIACTQP---RRVAAMSVSRRVAEE 139 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~----~~~~~~~i~~t~p---~~~~~~~v~~~v~~~ 139 (688)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+ ......++.+++...
T Consensus 286 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~ 365 (510)
T PRK09700 286 VCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAIS 365 (510)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccc
Confidence 6789999999999999999987433 222111110 0012455666653 233345677666432
Q ss_pred hccc---c----c--------ceec-eeeeeccc-ccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhH
Q 005605 140 MDVT---I----G--------EEVG-YSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (688)
Q Consensus 140 ~~~~---~----~--------~~vg-~~~~~~~~-~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (688)
.... . + ..+. +-..+.-. ...+..+..+|+|+.+++.+++.++.+++++|+|| +++|....
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~ 445 (510)
T PRK09700 366 RSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAK 445 (510)
T ss_pred cccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHH
Confidence 1100 0 0 0000 00001111 12356677899999999999999999999999999 78888888
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 201 DVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 201 d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
..+.++++.+.+. +..+|+.||.++ +..++++
T Consensus 446 ~~l~~~l~~l~~~--g~tvi~vsHd~~~~~~~~d~ 478 (510)
T PRK09700 446 AEIYKVMRQLADD--GKVILMVSSELPEIITVCDR 478 (510)
T ss_pred HHHHHHHHHHHHC--CCEEEEEcCCHHHHHhhCCE
Confidence 8899999988653 678999999984 4555543
No 335
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.85 E-value=4.5e-09 Score=118.64 Aligned_cols=156 Identities=19% Similarity=0.298 Sum_probs=101.3
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCcc----ccCceEEEEcCCc---hhhhccHHHHHHH
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD----RRRKMMIACTQPR---RVAAMSVSRRVAE 138 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~----~~~~~~i~~t~p~---~~~~~~v~~~v~~ 138 (688)
.+..|+.++|+|+|||||||++..+. +++.++.... ..+.+.++++++. .....++.+++..
T Consensus 274 ~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~ 353 (501)
T PRK10762 274 TLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSL 353 (501)
T ss_pred EEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhh
Confidence 46789999999999999999987433 2221111100 1134667777652 3344567666643
Q ss_pred hhc--c-c----c-----cceec-eeeeecc-cccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHH
Q 005605 139 EMD--V-T----I-----GEEVG-YSIRFED-CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (688)
Q Consensus 139 ~~~--~-~----~-----~~~vg-~~~~~~~-~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ 202 (688)
... . . . ...+. +-..+.- ....+..+..+|+|+++++.++++++.+++++|||| +++|......
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~ 433 (501)
T PRK10762 354 TALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKE 433 (501)
T ss_pred hhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHH
Confidence 110 0 0 0 00000 0000110 012356677899999999999999999999999999 7888888989
Q ss_pred HHHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 203 LFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 203 ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
+.++++.+.+. +..+|+.||.++ +..+++.
T Consensus 434 l~~~l~~~~~~--g~tviivtHd~~~~~~~~d~ 464 (501)
T PRK10762 434 IYQLINQFKAE--GLSIILVSSEMPEVLGMSDR 464 (501)
T ss_pred HHHHHHHHHHC--CCEEEEEcCCHHHHHhhCCE
Confidence 99999998654 678999999985 4555543
No 336
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.85 E-value=6.9e-09 Score=107.33 Aligned_cols=151 Identities=18% Similarity=0.257 Sum_probs=96.9
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHh----------------cCccCCC-----ccccCceEEEEcCCchhhhccHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVL----------------EGVDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll----------------~~~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (688)
+.+|+.++|+|+|||||||++..+.- ++.++.. ....+.+.++++.+.... .++.+++
T Consensus 36 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl 114 (269)
T PRK14259 36 IPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENI 114 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccch-hhHHHHH
Confidence 56899999999999999999875421 1111100 001224566777665444 4777766
Q ss_pred HHhhccc------------ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHH
Q 005605 137 AEEMDVT------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (688)
Q Consensus 137 ~~~~~~~------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ 202 (688)
....... ....+|..... ....+..+..+|+|+.+++.++++++.+++++|+|| +++|......
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~ 192 (269)
T PRK14259 115 AFGARINGYTGDMDELVERSLRKAAVWDEC--KDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLK 192 (269)
T ss_pred hhhhhhcCCcHHHHHHHHHHHHHhCCcchh--hhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHH
Confidence 4321100 00111100000 011345567799999999999999999999999999 7777778888
Q ss_pred HHHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 203 LFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 203 ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
+.++++++.+ +..+|+.||.++ +..++++
T Consensus 193 l~~~l~~~~~---~~tiiivtH~~~~~~~~~d~ 222 (269)
T PRK14259 193 IEETMHELKK---NFTIVIVTHNMQQAVRVSDM 222 (269)
T ss_pred HHHHHHHHhc---CCEEEEEeCCHHHHHHhcCE
Confidence 8888888732 468899999884 4556654
No 337
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.85 E-value=6.9e-09 Score=105.99 Aligned_cols=151 Identities=23% Similarity=0.303 Sum_probs=98.4
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHh----------cC------ccCCC-----ccccCceEEEEcCCchhhhccHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll----------~~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (688)
+.+|+.++|+|+|||||||++..+.= .+ .++.. ....+.+.++++.+.... .++.+++
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l 102 (247)
T TIGR00972 24 IPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNI 102 (247)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHH
Confidence 57899999999999999999875321 11 11110 001234567777665555 6777776
Q ss_pred HHhhccc--------------ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhH
Q 005605 137 AEEMDVT--------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (688)
Q Consensus 137 ~~~~~~~--------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (688)
....... +...+|..... ....+..+..+|+|+.+++.++++++.+++++|+|| ++.|....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~ 180 (247)
T TIGR00972 103 AYGPRLHGIKDKKELDEIVEESLKKAALWDEV--KDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIAT 180 (247)
T ss_pred HhHHHhcCCCCHHHHHHHHHHHHHHcCCCcch--hhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 5321100 01111211000 012345667899999999999999999999999999 67777778
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 201 DVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 201 d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
..+.++++.+.+ +..+|+.||.++ ...+++.
T Consensus 181 ~~l~~~l~~~~~---~~tiiivsH~~~~~~~~~d~ 212 (247)
T TIGR00972 181 GKIEELIQELKK---KYTIVIVTHNMQQAARISDR 212 (247)
T ss_pred HHHHHHHHHHHh---cCeEEEEecCHHHHHHhCCE
Confidence 888888888754 258899999885 4555554
No 338
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.85 E-value=3.9e-09 Score=119.16 Aligned_cols=156 Identities=19% Similarity=0.274 Sum_probs=100.5
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc----cccCceEEEEcCCc---hhhhccHHHHHHH
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP----DRRRKMMIACTQPR---RVAAMSVSRRVAE 138 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~----~~~~~~~i~~t~p~---~~~~~~v~~~v~~ 138 (688)
.+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+. .....++.+++..
T Consensus 275 ~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~ 354 (501)
T PRK11288 275 SVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINI 354 (501)
T ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhcc
Confidence 36799999999999999999987443 111111100 00123455565542 3344667666543
Q ss_pred hhcccc---c---------ceec-eeeeecc-cccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHH
Q 005605 139 EMDVTI---G---------EEVG-YSIRFED-CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (688)
Q Consensus 139 ~~~~~~---~---------~~vg-~~~~~~~-~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ 202 (688)
...... + ..+. +...+.- ....++.+..+|+|+.+|+.+++.++.+++++|||| .++|......
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~ 434 (501)
T PRK11288 355 SARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHE 434 (501)
T ss_pred ccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHH
Confidence 110000 0 0000 0001111 012456778899999999999999999999999999 8888888888
Q ss_pred HHHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 203 LFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 203 ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
+..+++++.+. +..+|++||.++ +..++++
T Consensus 435 l~~~l~~l~~~--g~tviivsHd~~~~~~~~d~ 465 (501)
T PRK11288 435 IYNVIYELAAQ--GVAVLFVSSDLPEVLGVADR 465 (501)
T ss_pred HHHHHHHHHhC--CCEEEEECCCHHHHHhhCCE
Confidence 99999888654 678999999984 4555544
No 339
>PRK13409 putative ATPase RIL; Provisional
Probab=98.85 E-value=7.1e-09 Score=118.30 Aligned_cols=148 Identities=18% Similarity=0.131 Sum_probs=100.8
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhcCccCCCcc--ccCceEEEEcCCchhhhccHHHHHHHhhcc--------cccce
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPD--RRRKMMIACTQPRRVAAMSVSRRVAEEMDV--------TIGEE 147 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~--~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--------~~~~~ 147 (688)
+..|+.++|+|+|||||||++..+.=... ..... ....+.++++.+......++.+.+...... .+...
T Consensus 362 i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~-p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~ 440 (590)
T PRK13409 362 IYEGEVIGIVGPNGIGKTTFAKLLAGVLK-PDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKP 440 (590)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHH
Confidence 67899999999999999999886431111 01100 001344566655444456777776532110 00111
Q ss_pred eceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEeccc
Q 005605 148 VGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSAT 225 (688)
Q Consensus 148 vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT 225 (688)
+|. ....+..+..+|+|+++|+.+++.++.+++++|||| +++|......+..+++++.+.. +..+|+.||.
T Consensus 441 l~l------~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~-g~tviivsHD 513 (590)
T PRK13409 441 LQL------ERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEER-EATALVVDHD 513 (590)
T ss_pred CCC------HHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCC
Confidence 111 112356778899999999999999999999999999 8888888888999999987654 6789999999
Q ss_pred cc-HHHHHc
Q 005605 226 LE-AEKFQG 233 (688)
Q Consensus 226 ~~-~~~~~~ 233 (688)
++ +..+++
T Consensus 514 ~~~~~~~aD 522 (590)
T PRK13409 514 IYMIDYISD 522 (590)
T ss_pred HHHHHHhCC
Confidence 85 344554
No 340
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.85 E-value=5.3e-09 Score=104.75 Aligned_cols=148 Identities=16% Similarity=0.256 Sum_probs=91.0
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc-------cccCceEEEEcCCchhhhccHHHHHHHh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP-------DRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~-------~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (688)
+.+|+.++|+|++||||||++..+. +++.+.... ...+.+.++++++... ..++.+++...
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~ 102 (218)
T cd03290 24 IPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL-NATVEENITFG 102 (218)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccc-cccHHHHHhhc
Confidence 5689999999999999999987432 222111110 0113455666666443 45666666432
Q ss_pred hcc------cccceeceeeeecc-----cccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHH-
Q 005605 140 MDV------TIGEEVGYSIRFED-----CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG- 205 (688)
Q Consensus 140 ~~~------~~~~~vg~~~~~~~-----~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~- 205 (688)
... ......|.....+. .......+..+|+|+.+++.++++++.+++++|+|| ++++....+.++.
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~ 182 (218)
T cd03290 103 SPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQE 182 (218)
T ss_pred CcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHH
Confidence 110 00011111100000 001124567899999999999999999999999999 6777677777766
Q ss_pred -HHHHHHhcCCCcEEEEecccccH
Q 005605 206 -LLKEVLKNRPDLKLVVMSATLEA 228 (688)
Q Consensus 206 -~l~~i~~~~~~~~vil~SAT~~~ 228 (688)
+++.+.+ . +..+|+.||..+.
T Consensus 183 ~ll~~~~~-~-~~tii~~sH~~~~ 204 (218)
T cd03290 183 GILKFLQD-D-KRTLVLVTHKLQY 204 (218)
T ss_pred HHHHHHhc-C-CCEEEEEeCChHH
Confidence 5555433 2 6789999999854
No 341
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.85 E-value=1.1e-08 Score=104.76 Aligned_cols=151 Identities=22% Similarity=0.272 Sum_probs=98.8
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhc----------C------ccCCC---ccccCceEEEEcCCchhhhccHHHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLE----------G------VDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAE 138 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~----------~------~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~ 138 (688)
+.+|+.++|+|+|||||||++..+.-. + .++.. ....+.+.++++.+......++.+++..
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~ 105 (250)
T PRK14247 26 IPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVAL 105 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHH
Confidence 568999999999999999998744311 1 00100 0112345677777655556778777753
Q ss_pred hhccc---------------ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHH
Q 005605 139 EMDVT---------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (688)
Q Consensus 139 ~~~~~---------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d 201 (688)
..... ....+|..... ....+..+..+|+|+.+++.++++++.+++++|+|| ++.|....+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~ 183 (250)
T PRK14247 106 GLKLNRLVKSKKELQERVRWALEKAQLWDEV--KDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTA 183 (250)
T ss_pred HHHhccccCCHHHHHHHHHHHHHHcCCCcch--hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence 21100 00111210000 012345667899999999999999999999999999 777778888
Q ss_pred HHHHHHHHHHhcCCCcEEEEecccccH-HHHHc
Q 005605 202 VLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (688)
Q Consensus 202 ~ll~~l~~i~~~~~~~~vil~SAT~~~-~~~~~ 233 (688)
.+..+++++.+ +..+|+.||.++. ..+++
T Consensus 184 ~l~~~l~~~~~---~~tiii~sH~~~~~~~~~d 213 (250)
T PRK14247 184 KIESLFLELKK---DMTIVLVTHFPQQAARISD 213 (250)
T ss_pred HHHHHHHHHhc---CCEEEEEeCCHHHHHHhcC
Confidence 88888888732 5789999998853 34444
No 342
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.85 E-value=6.5e-09 Score=107.77 Aligned_cols=151 Identities=17% Similarity=0.263 Sum_probs=97.4
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHh----------cC------ccCCC-----ccccCceEEEEcCCchhhhccHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll----------~~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (688)
+..|+.++|+|+|||||||++..+.- .+ .++.. ....+.+.++++++.... .++.+++
T Consensus 43 i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl 121 (274)
T PRK14265 43 IPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFP-KSIYENI 121 (274)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCcccc-ccHHHHH
Confidence 56899999999999999999875431 11 01100 011234566776665443 3666666
Q ss_pred HHhhccc------------ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHH
Q 005605 137 AEEMDVT------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (688)
Q Consensus 137 ~~~~~~~------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ 202 (688)
....... ....+|..... ....+..+..+|+|+++++.++++++.+++++|+|| +++|....+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~ 199 (274)
T PRK14265 122 AFAPRANGYKGNLDELVEDSLRRAAIWEEV--KDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQ 199 (274)
T ss_pred HhHHHhcCchHHHHHHHHHHHHHcccchhh--HHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHH
Confidence 4321100 00111110000 011245567799999999999999999999999999 7788888888
Q ss_pred HHHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 203 LFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 203 ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
+..+++.+.+ +..+|+.||.++ ...++++
T Consensus 200 l~~~L~~~~~---~~tiii~sH~~~~~~~~~d~ 229 (274)
T PRK14265 200 VEELCLELKE---QYTIIMVTHNMQQASRVADW 229 (274)
T ss_pred HHHHHHHHhc---CCEEEEEeCCHHHHHHhCCE
Confidence 8888888743 468999999984 4555544
No 343
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.85 E-value=4.3e-09 Score=119.43 Aligned_cols=155 Identities=16% Similarity=0.247 Sum_probs=102.7
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hc-Ccc---CCCc------cccCceEEEEcCCchhhhccHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LE-GVD---IETP------DRRRKMMIACTQPRRVAAMSVSRRV 136 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~-~~~---~~~~------~~~~~~~i~~t~p~~~~~~~v~~~v 136 (688)
+.+|+.++|+|+|||||||++..+. ++ +.+ +... ...+.+.++++.+......++.+++
T Consensus 307 i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l 386 (520)
T TIGR03269 307 VKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNL 386 (520)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHH
Confidence 6799999999999999999987432 11 110 0000 0112456777766555556777777
Q ss_pred HHhhcc------------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHH
Q 005605 137 AEEMDV------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (688)
Q Consensus 137 ~~~~~~------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ 202 (688)
...... .+...+|.... ......+..+..+|+|+.+|+.++++++.+++++|+|| +++|......
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~ 465 (520)
T TIGR03269 387 TEAIGLELPDELARMKAVITLKMVGFDEE-KAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVD 465 (520)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCCCCCc-cchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 542211 00111121100 00001356678899999999999999999999999999 7888888888
Q ss_pred HHHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 203 LFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 203 ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
+..+++++.+.. +..+|+.||.++ +..++++
T Consensus 466 l~~~l~~l~~~~-g~tvi~vsHd~~~~~~~~d~ 497 (520)
T TIGR03269 466 VTHSILKAREEM-EQTFIIVSHDMDFVLDVCDR 497 (520)
T ss_pred HHHHHHHHHHHc-CcEEEEEeCCHHHHHHhCCE
Confidence 999998886654 678999999985 3445543
No 344
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.84 E-value=3.8e-09 Score=120.09 Aligned_cols=157 Identities=20% Similarity=0.298 Sum_probs=102.1
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHH----------hcCccCCCcc------ccCceEEEEcCCc--hhhhccHHHHHHH
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFV----------LEGVDIETPD------RRRKMMIACTQPR--RVAAMSVSRRVAE 138 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l----------l~~~~~~~~~------~~~~~~i~~t~p~--~~~~~~v~~~v~~ 138 (688)
.+..|+.++|+|+|||||||++..+. +++.++.... ..+.+.++++.+. .....++.+++..
T Consensus 308 ~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~ 387 (529)
T PRK15134 308 TLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEE 387 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHH
Confidence 36799999999999999999887433 1111111100 0224567777652 3334577777654
Q ss_pred hhccc---cc-----ceec-eeeeeccc-ccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHH
Q 005605 139 EMDVT---IG-----EEVG-YSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL 206 (688)
Q Consensus 139 ~~~~~---~~-----~~vg-~~~~~~~~-~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~ 206 (688)
..... .. ..+. +...+.-. ...+..+..+|+|+.+|+.++++++.+++++|+|| +++|......++++
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 467 (529)
T PRK15134 388 GLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILAL 467 (529)
T ss_pred HHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHH
Confidence 21100 00 0000 00001100 11345677899999999999999999999999999 78888888889999
Q ss_pred HHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 207 LKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 207 l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
++++.+.. +..+|++||.++ +..++++
T Consensus 468 l~~~~~~~-~~tvi~vsHd~~~~~~~~d~ 495 (529)
T PRK15134 468 LKSLQQKH-QLAYLFISHDLHVVRALCHQ 495 (529)
T ss_pred HHHHHHhh-CCEEEEEeCCHHHHHHhcCe
Confidence 99887653 678999999985 4455544
No 345
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.84 E-value=6.9e-09 Score=106.42 Aligned_cols=151 Identities=21% Similarity=0.299 Sum_probs=97.0
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHh----------cC------ccCCCc-----cccCceEEEEcCCchhhhccHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIETP-----DRRRKMMIACTQPRRVAAMSVSRRV 136 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll----------~~------~~~~~~-----~~~~~~~i~~t~p~~~~~~~v~~~v 136 (688)
+..|+.++|+|+|||||||++....= .+ .++... ...+.+.++++.+.... .++.+++
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl 107 (253)
T PRK14242 29 FEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENV 107 (253)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHH
Confidence 67899999999999999999875431 01 011100 01234566777665444 4777776
Q ss_pred HHhhccc--------------ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhH
Q 005605 137 AEEMDVT--------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (688)
Q Consensus 137 ~~~~~~~--------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (688)
....... ....+|..... ....+..+..+|+|+.+++.++++++.+++++++|| +++|....
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~ 185 (253)
T PRK14242 108 AYGLRVNGVKDKAYLAERVERSLRHAALWDEV--KDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIAT 185 (253)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh--hHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 5321100 00111110000 011244567799999999999999999999999999 77777788
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 201 DVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 201 d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
..+..+++++. . +..+|+.||.++ ...+++.
T Consensus 186 ~~l~~~l~~~~-~--~~tvii~tH~~~~~~~~~d~ 217 (253)
T PRK14242 186 QKIEELIHELK-A--RYTIIIVTHNMQQAARVSDV 217 (253)
T ss_pred HHHHHHHHHHh-c--CCeEEEEEecHHHHHHhCCE
Confidence 88888888873 2 468899999885 3455543
No 346
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.84 E-value=7.5e-09 Score=107.01 Aligned_cols=155 Identities=16% Similarity=0.178 Sum_probs=96.2
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhcCc-------------------cCCC--c-cccCceEEEEcCCchhhhccHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLEGV-------------------DIET--P-DRRRKMMIACTQPRRVAAMSVSRR 135 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~-------------------~~~~--~-~~~~~~~i~~t~p~~~~~~~v~~~ 135 (688)
+..|+.++|+|+|||||||++..+.-... ++.. . ...+.+.++++.+......++.++
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~ 103 (272)
T PRK13547 24 IEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREI 103 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHH
Confidence 57899999999999999999875421100 0000 0 001123455655543334677777
Q ss_pred HHHhhccc---cc-------ceeceee-eecccccccccccccCHHHHHHHHhccccc---------cCCcEEeecc--c
Q 005605 136 VAEEMDVT---IG-------EEVGYSI-RFEDCSSARTVLKYLTDGMLLREAMTDPLL---------ERYKVIVLDE--A 193 (688)
Q Consensus 136 v~~~~~~~---~~-------~~vg~~~-~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll---------~~~~~lIlDE--a 193 (688)
+....... .+ ..+.... .+.-....+..+..+|+|+.+++.+++.++ .+++++|+|| +
T Consensus 104 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~ 183 (272)
T PRK13547 104 VLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTA 183 (272)
T ss_pred HhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccc
Confidence 64321000 00 0000000 000001124566789999999999999998 5999999999 7
Q ss_pred CcChhhHHHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHc
Q 005605 194 HERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 194 her~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~ 233 (688)
++|....+.+.++++++.+.. +..+|+.||.++ ...+++
T Consensus 184 ~LD~~~~~~l~~~l~~~~~~~-~~tviiisH~~~~~~~~~d 223 (272)
T PRK13547 184 ALDLAHQHRLLDTVRRLARDW-NLGVLAIVHDPNLAARHAD 223 (272)
T ss_pred cCCHHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCC
Confidence 778888888999998876543 578999999885 334444
No 347
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.84 E-value=1e-08 Score=92.79 Aligned_cols=134 Identities=21% Similarity=0.344 Sum_probs=80.7
Q ss_pred hcCCEEEEEeCCCCChhcc-hhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhcccccceeceeeeec-c
Q 005605 79 KANQVIILVGETGSGKTTQ-IPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFE-D 156 (688)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~-~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~-~ 156 (688)
.+|+..+|--.+|+|||+. +|.++.+.. .++..+++..|.|..+.++.+.+... . +.+..... .
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~~~i-------~~~~rvLvL~PTRvva~em~~aL~~~-~------~~~~t~~~~~ 67 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVREAI-------KRRLRVLVLAPTRVVAEEMYEALKGL-P------VRFHTNARMR 67 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHHHHH-------HTT--EEEEESSHHHHHHHHHHTTTS-S------EEEESTTSS-
T ss_pred CCCceeEEecCCCCCCcccccHHHHHHHH-------HccCeEEEecccHHHHHHHHHHHhcC-C------cccCceeeec
Confidence 4688899999999999996 666665554 12334555666666555554444221 1 11111110 1
Q ss_pred cccccccccccCHHHHHHHHhccccccCCcEEeecccCcChhhHHHHHHHHHHHHhcCCCcEEEEeccccc
Q 005605 157 CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (688)
Q Consensus 157 ~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEaher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~ 227 (688)
....+..|.++|.+.+.+.+....-+.+++++|+||+|--.-..-...+.++..... ...++|+||||.+
T Consensus 68 ~~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~-g~~~~i~mTATPP 137 (148)
T PF07652_consen 68 THFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAES-GEAKVIFMTATPP 137 (148)
T ss_dssp ---SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHT-TS-EEEEEESS-T
T ss_pred cccCCCcccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhhhc-cCeeEEEEeCCCC
Confidence 123456778899998888776655589999999999996444444566777777555 3678999999974
No 348
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.84 E-value=3.1e-09 Score=107.68 Aligned_cols=147 Identities=20% Similarity=0.252 Sum_probs=92.4
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhcc-
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (688)
+..|+.++|+|+|||||||++.... +++.++.. ....+.+.++++.+... ..++.+++......
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~enl~~~~~~~ 103 (234)
T cd03251 25 IPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLF-NDTVAENIAYGRPGA 103 (234)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeec-cccHHHHhhccCCCC
Confidence 5689999999999999999987432 11111110 00122355666555433 35777766432110
Q ss_pred c---c---cceeceeeeec-----ccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHH
Q 005605 143 T---I---GEEVGYSIRFE-----DCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (688)
Q Consensus 143 ~---~---~~~vg~~~~~~-----~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~ 209 (688)
. . ....+.....+ -....+..+..+|+|+.+++.++++++.+++++|+|| .+.|....+.+..++++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~ 183 (234)
T cd03251 104 TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALER 183 (234)
T ss_pred CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 0 0 00001100000 0011234567899999999999999999999999999 67777778888888887
Q ss_pred HHhcCCCcEEEEecccccH
Q 005605 210 VLKNRPDLKLVVMSATLEA 228 (688)
Q Consensus 210 i~~~~~~~~vil~SAT~~~ 228 (688)
+.+ +..+|+.||.++.
T Consensus 184 ~~~---~~tii~~sh~~~~ 199 (234)
T cd03251 184 LMK---NRTTFVIAHRLST 199 (234)
T ss_pred hcC---CCEEEEEecCHHH
Confidence 742 5789999998853
No 349
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.84 E-value=9.2e-09 Score=116.72 Aligned_cols=73 Identities=18% Similarity=0.233 Sum_probs=61.9
Q ss_pred cccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEecccccH-HHHHch
Q 005605 161 RTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (688)
Q Consensus 161 ~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~~-~~~~~~ 234 (688)
+..+..+|+|+.+|+.++++++.++++++||| +++|......++.+++++.+.. +..+|+.||.++. ..+++.
T Consensus 163 ~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~-g~tviivtHd~~~~~~~~d~ 238 (520)
T TIGR03269 163 THIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKAS-GISMVLTSHWPEVIEDLSDK 238 (520)
T ss_pred hcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHhcCE
Confidence 45678899999999999999999999999999 8888999999999999986654 6789999999853 445543
No 350
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.83 E-value=6.2e-09 Score=105.15 Aligned_cols=151 Identities=21% Similarity=0.265 Sum_probs=93.2
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhcCc---------------cCCCccc-cCceEEEEcCCch-h-hhccHHHHHHHh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLEGV---------------DIETPDR-RRKMMIACTQPRR-V-AAMSVSRRVAEE 139 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~---------------~~~~~~~-~~~~~i~~t~p~~-~-~~~~v~~~v~~~ 139 (688)
+.+|+.++|.|+|||||||++..+.=... ++..... .+.+.++++.+.. . ...++.+++...
T Consensus 9 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~ 88 (230)
T TIGR02770 9 LKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIET 88 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHH
Confidence 56899999999999999999874331111 0000001 1245566666531 2 234554444221
Q ss_pred h---cc----------cccceeceeeeeccc-ccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHH
Q 005605 140 M---DV----------TIGEEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (688)
Q Consensus 140 ~---~~----------~~~~~vg~~~~~~~~-~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~l 203 (688)
. +. .....+|. ... ...+..+..+|+|+.+++.++++++.+++++|||| ++.|......+
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l 164 (230)
T TIGR02770 89 LRSLGKLSKQARALILEALEAVGL----PDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARV 164 (230)
T ss_pred HHHcCccHHHHHHHHHHHHHHcCC----CchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHH
Confidence 1 00 00011111 000 11345667899999999999999999999999999 66776777778
Q ss_pred HHHHHHHHhcCCCcEEEEeccccc-HHHHHc
Q 005605 204 FGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 204 l~~l~~i~~~~~~~~vil~SAT~~-~~~~~~ 233 (688)
..+++++.+.. +..+|+.||.++ ...+++
T Consensus 165 ~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d 194 (230)
T TIGR02770 165 LKLLRELRQLF-GTGILLITHDLGVVARIAD 194 (230)
T ss_pred HHHHHHHHHhc-CCEEEEEeCCHHHHHHhCC
Confidence 88888876532 568999999874 334444
No 351
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.83 E-value=3.1e-09 Score=107.95 Aligned_cols=147 Identities=18% Similarity=0.237 Sum_probs=91.5
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHh-----------cCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhccc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVL-----------EGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll-----------~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (688)
+..|+.++|+|+|||||||++..+.- ++.++.. ....+.+.++++.+.... .++.+++.......
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~ 104 (238)
T cd03249 26 IPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA 104 (238)
T ss_pred ecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCC
Confidence 56899999999999999999874331 1111110 001123556665554332 46666654211100
Q ss_pred c-------cceeceeeeecc-----cccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHH
Q 005605 144 I-------GEEVGYSIRFED-----CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (688)
Q Consensus 144 ~-------~~~vg~~~~~~~-----~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~ 209 (688)
. ....+.....+. .......+..+|+|+.+++.++++++.+++++|+|| +++|......+..+++.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~ 184 (238)
T cd03249 105 TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDR 184 (238)
T ss_pred CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 0 000010000000 001234566799999999999999999999999999 67777778888888887
Q ss_pred HHhcCCCcEEEEecccccH
Q 005605 210 VLKNRPDLKLVVMSATLEA 228 (688)
Q Consensus 210 i~~~~~~~~vil~SAT~~~ 228 (688)
+. .+..+|+.||.++.
T Consensus 185 ~~---~g~~vi~~sh~~~~ 200 (238)
T cd03249 185 AM---KGRTTIVIAHRLST 200 (238)
T ss_pred hc---CCCEEEEEeCCHHH
Confidence 74 26789999998754
No 352
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.83 E-value=4.4e-09 Score=107.94 Aligned_cols=152 Identities=18% Similarity=0.254 Sum_probs=99.0
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHHh----------------cCccCCC-----ccccCceEEEEcCCchhhhccHHHH
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFVL----------------EGVDIET-----PDRRRKMMIACTQPRRVAAMSVSRR 135 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll----------------~~~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~ 135 (688)
.+..|+.++|+|+|||||||++..+.- ++.++.. ....+.+.++++.+... ..++.++
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~en 107 (254)
T PRK14273 29 KILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPF-LMSIYDN 107 (254)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccc-cCcHHHH
Confidence 367999999999999999998874321 1111110 00123466777776555 3677777
Q ss_pred HHHhhccc--------------ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhh
Q 005605 136 VAEEMDVT--------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLA 199 (688)
Q Consensus 136 v~~~~~~~--------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~ 199 (688)
+....... ....+|..... ....++.+..+|+|+.+++.++++++.+++++|+|| ++.|...
T Consensus 108 i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~ 185 (254)
T PRK14273 108 ISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV--KDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPIS 185 (254)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh--HHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHH
Confidence 75322100 00011110000 012355677899999999999999999999999999 7777778
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEecccccH-HHHHch
Q 005605 200 TDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (688)
Q Consensus 200 ~d~ll~~l~~i~~~~~~~~vil~SAT~~~-~~~~~~ 234 (688)
...+..+++.+. . +..+|+.||.++. ..+++.
T Consensus 186 ~~~l~~~l~~~~-~--~~tvii~sH~~~~~~~~~d~ 218 (254)
T PRK14273 186 TGKIEELIINLK-E--SYTIIIVTHNMQQAGRISDR 218 (254)
T ss_pred HHHHHHHHHHHh-c--CCEEEEEeCCHHHHHHhCCE
Confidence 888888888873 2 4688999999853 445543
No 353
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.83 E-value=8.7e-09 Score=105.71 Aligned_cols=153 Identities=22% Similarity=0.325 Sum_probs=95.6
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHHhc---------C------ccCCCcc-ccCceEEEEcCCch-h-hhccHHHHHHH
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFVLE---------G------VDIETPD-RRRKMMIACTQPRR-V-AAMSVSRRVAE 138 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~---------~------~~~~~~~-~~~~~~i~~t~p~~-~-~~~~v~~~v~~ 138 (688)
.+..|+.++|+|+|||||||++..+.-. + .++.... ..+.+.++++++.. . ...++.+++..
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~ 104 (254)
T PRK10418 25 TLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARE 104 (254)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHH
Confidence 3578999999999999999998753311 1 0010000 11245666776531 1 22344443322
Q ss_pred h---hccc--------ccceeceeeeeccc-ccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHH
Q 005605 139 E---MDVT--------IGEEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (688)
Q Consensus 139 ~---~~~~--------~~~~vg~~~~~~~~-~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll 204 (688)
. .+.. +...+|.. .. ...+..+..+|+|+.+++.++++++.+++++|+|| ++.|......+.
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~ 180 (254)
T PRK10418 105 TCLALGKPADDATLTAALEAVGLE----NAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARIL 180 (254)
T ss_pred HHHHcCCChHHHHHHHHHHHcCCC----ChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHH
Confidence 1 1100 01111110 00 01245567799999999999999999999999999 677777788888
Q ss_pred HHHHHHHhcCCCcEEEEecccccH-HHHHch
Q 005605 205 GLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (688)
Q Consensus 205 ~~l~~i~~~~~~~~vil~SAT~~~-~~~~~~ 234 (688)
.+++.+.+.. +..+|+.||.++. ..+++.
T Consensus 181 ~~L~~~~~~~-g~til~~sH~~~~~~~~~d~ 210 (254)
T PRK10418 181 DLLESIVQKR-ALGMLLVTHDMGVVARLADD 210 (254)
T ss_pred HHHHHHHHhc-CcEEEEEecCHHHHHHhCCE
Confidence 8888876543 6789999998853 445543
No 354
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=4.7e-09 Score=114.43 Aligned_cols=148 Identities=24% Similarity=0.362 Sum_probs=95.2
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHh---
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEE--- 139 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~--- 139 (688)
.+..|+.++++|++||||||++.... +++.+..+ ...++.+..++++|...+ -++.+++.-.
T Consensus 343 t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~~~ 421 (559)
T COG4988 343 TIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLARPD 421 (559)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccCCc
Confidence 57899999999999999999886432 22222211 112345667777776554 4666666321
Q ss_pred ----hcccccceeceeeeeccccccccccc----ccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHH
Q 005605 140 ----MDVTIGEEVGYSIRFEDCSSARTVLK----YLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (688)
Q Consensus 140 ----~~~~~~~~vg~~~~~~~~~~~~~~i~----~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~ 209 (688)
.-..+.+.+|...-...-...++.|. -+|+|+.+|+.++++++++.+++++|| +|.|...-..+++.+.+
T Consensus 422 ~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~ 501 (559)
T COG4988 422 ASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQE 501 (559)
T ss_pred CCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHH
Confidence 11122222332111111011223333 389999999999999999999999999 89876666677777777
Q ss_pred HHhcCCCcEEEEecccccH
Q 005605 210 VLKNRPDLKLVVMSATLEA 228 (688)
Q Consensus 210 i~~~~~~~~vil~SAT~~~ 228 (688)
+.+. ..+++.||-+..
T Consensus 502 l~~~---ktvl~itHrl~~ 517 (559)
T COG4988 502 LAKQ---KTVLVITHRLED 517 (559)
T ss_pred HHhC---CeEEEEEcChHH
Confidence 6554 588999998743
No 355
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.82 E-value=8e-09 Score=106.39 Aligned_cols=153 Identities=20% Similarity=0.264 Sum_probs=96.4
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhc----------C------ccCCC-----ccccCceEEEEcCCchhhhccHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLE----------G------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~----------~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (688)
+..|+.++|+|++||||||++..+.=. + .++.. ....+.+.++++.+.... .++.+++
T Consensus 30 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl 108 (261)
T PRK14258 30 IYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNV 108 (261)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc-ccHHHHH
Confidence 679999999999999999998743311 1 11100 001223455565554444 6777666
Q ss_pred HHhhc---c-c----------ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhH
Q 005605 137 AEEMD---V-T----------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (688)
Q Consensus 137 ~~~~~---~-~----------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (688)
..... . . +...+|..... ....+..+..+|+|+.+++.+++.++.+++++|+|| ++.|....
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~ 186 (261)
T PRK14258 109 AYGVKIVGWRPKLEIDDIVESALKDADLWDEI--KHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIAS 186 (261)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHcCCcchh--hhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 43211 0 0 00011100000 011245567899999999999999999999999999 67777777
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 201 DVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 201 d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
..+..+++.+.... +..+|++||.++ +..+++.
T Consensus 187 ~~l~~~l~~l~~~~-~~tiiivsH~~~~i~~~~d~ 220 (261)
T PRK14258 187 MKVESLIQSLRLRS-ELTMVIVSHNLHQVSRLSDF 220 (261)
T ss_pred HHHHHHHHHHHHhC-CCEEEEEECCHHHHHHhcCE
Confidence 77888888775433 678999999984 4555543
No 356
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.82 E-value=3.8e-09 Score=100.74 Aligned_cols=160 Identities=17% Similarity=0.309 Sum_probs=110.0
Q ss_pred CCChHHHHHHHHH----HhcCCEEEEEeCCCCChhcchh-----------HHHhcCccCCCccc-cCc--eEEEEcCCch
Q 005605 65 LPVWQQKEEFLQV----LKANQVIILVGETGSGKTTQIP-----------QFVLEGVDIETPDR-RRK--MMIACTQPRR 126 (688)
Q Consensus 65 lp~~~~q~~ii~~----i~~g~~vii~g~TGSGKTt~~~-----------~~ll~~~~~~~~~~-~~~--~~i~~t~p~~ 126 (688)
.+-++.+..++.- |.+|+++.|+|.||+||||++. ++.+++.++.+... .++ +.-+++.|..
T Consensus 12 ~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~ 91 (263)
T COG1101 12 FKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLA 91 (263)
T ss_pred cCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhh
Confidence 3445555555553 6799999999999999999987 44555555443111 111 2224555543
Q ss_pred h--hhccHHHHHH--Hhhccccccee--c-------------eeeeecccccccccccccCHHHHHHHHhccccccCCcE
Q 005605 127 V--AAMSVSRRVA--EEMDVTIGEEV--G-------------YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKV 187 (688)
Q Consensus 127 ~--~~~~v~~~v~--~~~~~~~~~~v--g-------------~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~ 187 (688)
- ..+++.++++ ..++..-|-.- . ...+++ ....+++..+|+|+.+-+.+.-+.+..+++
T Consensus 92 gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLe--nrL~~~iglLSGGQRQalsL~MAtl~~pki 169 (263)
T COG1101 92 GTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLE--NRLSDRIGLLSGGQRQALSLLMATLHPPKI 169 (263)
T ss_pred CCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchh--hhhcChhhhccchHHHHHHHHHHhcCCCcE
Confidence 2 4577888874 33322211111 0 001111 124678889999999999998888999999
Q ss_pred Eeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEeccccc
Q 005605 188 IVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (688)
Q Consensus 188 lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~ 227 (688)
+.||| |.+|+-...+++++-.++.++. ++..++++|.|.
T Consensus 170 LLLDEHTAALDPkta~~vm~lT~kiV~~~-klTtlMVTHnm~ 210 (263)
T COG1101 170 LLLDEHTAALDPKTAEFVMELTAKIVEEH-KLTTLMVTHNME 210 (263)
T ss_pred EEecchhhcCCcchHHHHHHHHHHHHHhc-CCceEEEeccHH
Confidence 99999 8889999999999999999887 899999999994
No 357
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.82 E-value=8.5e-09 Score=105.76 Aligned_cols=152 Identities=20% Similarity=0.277 Sum_probs=98.5
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhc----------C------ccCC--C---ccccCceEEEEcCCchhhhccHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLE----------G------VDIE--T---PDRRRKMMIACTQPRRVAAMSVSRRV 136 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~----------~------~~~~--~---~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (688)
+..|+.++|+|+|||||||++..+.-. + .++. . ....+.+.++++.+......++.+++
T Consensus 27 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl 106 (253)
T PRK14267 27 IPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNV 106 (253)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHH
Confidence 678999999999999999998743311 1 1111 0 00123456777776655566777777
Q ss_pred HHhhcc---------------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhh
Q 005605 137 AEEMDV---------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLA 199 (688)
Q Consensus 137 ~~~~~~---------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~ 199 (688)
...... .....+|..... ....+..+..+|+|+.+++.++++++.+++++|+|| +++|...
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~ 184 (253)
T PRK14267 107 AIGVKLNGLVKSKKELDERVEWALKKAALWDEV--KDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVG 184 (253)
T ss_pred HHHHHhcCccCCHHHHHHHHHHHHHHcCCccch--hhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 532110 001111210000 011345667899999999999999999999999999 6677777
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEecccccH-HHHHch
Q 005605 200 TDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (688)
Q Consensus 200 ~d~ll~~l~~i~~~~~~~~vil~SAT~~~-~~~~~~ 234 (688)
...+..+++++.+ +..+|+.||.++. ..+++.
T Consensus 185 ~~~l~~~l~~~~~---~~tiii~sH~~~~~~~~~d~ 217 (253)
T PRK14267 185 TAKIEELLFELKK---EYTIVLVTHSPAQAARVSDY 217 (253)
T ss_pred HHHHHHHHHHHhh---CCEEEEEECCHHHHHhhCCE
Confidence 7778888888743 4689999998853 445543
No 358
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.82 E-value=4.8e-09 Score=107.11 Aligned_cols=151 Identities=21% Similarity=0.348 Sum_probs=97.0
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhc--------C------ccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLE--------G------VDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~--------~------~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (688)
+..|+.++|+|+|||||||++..+.-. + .++.. ....+.+.++++++.... .++.+++....
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~ 103 (246)
T PRK14269 25 IEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAP 103 (246)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHH
Confidence 568999999999999999998754311 1 11110 011234667777765543 57777764321
Q ss_pred cc---------------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHH
Q 005605 141 DV---------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (688)
Q Consensus 141 ~~---------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~l 203 (688)
.. .+...+|..... ....+..+..+|+|+.+++.++++++.+++++++|| ++.|......+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l 181 (246)
T PRK14269 104 KLHGMIKNKDEEEALVVDCLQKVGLFEEV--KDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVI 181 (246)
T ss_pred hhcCcccChHHHHHHHHHHHHHcCCChhh--hHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 00 001111110000 011234566799999999999999999999999999 66777777778
Q ss_pred HHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 204 FGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 204 l~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
...++++.+ +..+|+.||.++ ...++++
T Consensus 182 ~~~l~~~~~---~~tiii~tH~~~~~~~~~d~ 210 (246)
T PRK14269 182 EELLKELSH---NLSMIMVTHNMQQGKRVADY 210 (246)
T ss_pred HHHHHHHhC---CCEEEEEecCHHHHHhhCcE
Confidence 888877642 578999999885 4555554
No 359
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.82 E-value=3e-09 Score=98.39 Aligned_cols=142 Identities=23% Similarity=0.291 Sum_probs=91.7
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-hcCc----------cCCC-cc---------------ccCceEEEEcCCchhhhc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-LEGV----------DIET-PD---------------RRRKMMIACTQPRRVAAM 130 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-l~~~----------~~~~-~~---------------~~~~~~i~~t~p~~~~~~ 130 (688)
...|+++.|+|.+||||||.+.-+- ++.. .+.- .. .+..+.++++.-..-..+
T Consensus 29 A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHm 108 (256)
T COG4598 29 ANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHM 108 (256)
T ss_pred cCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHH
Confidence 4689999999999999999887322 2211 1100 00 001122223222233344
Q ss_pred cHHHHHHH--------------hhcccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cC
Q 005605 131 SVSRRVAE--------------EMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AH 194 (688)
Q Consensus 131 ~v~~~v~~--------------~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--ah 194 (688)
++.+++.+ +........||.. ...+..+..+|+|+.+|..+++++..+|+++++|| ..
T Consensus 109 tvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~------ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSA 182 (256)
T COG4598 109 TVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIA------EKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSA 182 (256)
T ss_pred HHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCch------hhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCccc
Confidence 55555532 1222333445543 22345677899999999999999999999999999 44
Q ss_pred cChhhHHHHHHHHHHHHhcCCCcEEEEeccccc
Q 005605 195 ERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (688)
Q Consensus 195 er~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~ 227 (688)
+|+...+..+.+++++.+. +++.++++|-|.
T Consensus 183 LDPElVgEVLkv~~~LAeE--grTMv~VTHEM~ 213 (256)
T COG4598 183 LDPELVGEVLKVMQDLAEE--GRTMVVVTHEMG 213 (256)
T ss_pred CCHHHHHHHHHHHHHHHHh--CCeEEEEeeehh
Confidence 5667777788888888776 788999999984
No 360
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.81 E-value=6e-09 Score=105.67 Aligned_cols=147 Identities=19% Similarity=0.240 Sum_probs=91.9
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHh-----------cCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhcc-
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVL-----------EGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll-----------~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (688)
+..|+.++|+|+|||||||++..+.- ++.++.. ....+.+.++++.+... ..++.+++......
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~~nl~~~~~~~ 102 (236)
T cd03253 24 IPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLF-NDTIGYNIRYGRPDA 102 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhh-cchHHHHHhhcCCCC
Confidence 56899999999999999999874331 1111110 00112355666665433 35666666432100
Q ss_pred c---c---cceeceeeeeccc-----ccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHH
Q 005605 143 T---I---GEEVGYSIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (688)
Q Consensus 143 ~---~---~~~vg~~~~~~~~-----~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~ 209 (688)
. + ....+.....+.. ......+..+|+|+.+++.++++++.+++++|+|| +++|....+.+..+++.
T Consensus 103 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 182 (236)
T cd03253 103 TDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRD 182 (236)
T ss_pred CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 0 0 0001110000000 01233456799999999999999999999999999 67777777788888877
Q ss_pred HHhcCCCcEEEEecccccH
Q 005605 210 VLKNRPDLKLVVMSATLEA 228 (688)
Q Consensus 210 i~~~~~~~~vil~SAT~~~ 228 (688)
+.+ +..+|+.||..+.
T Consensus 183 ~~~---~~tiii~sh~~~~ 198 (236)
T cd03253 183 VSK---GRTTIVIAHRLST 198 (236)
T ss_pred hcC---CCEEEEEcCCHHH
Confidence 643 5688999998854
No 361
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.81 E-value=8.6e-09 Score=106.00 Aligned_cols=151 Identities=23% Similarity=0.335 Sum_probs=98.3
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHh----------cC------ccCCCc-----cccCceEEEEcCCchhhhccHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIETP-----DRRRKMMIACTQPRRVAAMSVSRRV 136 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll----------~~------~~~~~~-----~~~~~~~i~~t~p~~~~~~~v~~~v 136 (688)
+..|+.++|+|+|||||||++..+.- .+ .++... ...+.+.++++.+.... .++.+++
T Consensus 35 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl 113 (258)
T PRK14268 35 IPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNV 113 (258)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHH
Confidence 56899999999999999999875431 11 111100 01234566776665444 6777776
Q ss_pred HHhh---ccc----------ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHH
Q 005605 137 AEEM---DVT----------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (688)
Q Consensus 137 ~~~~---~~~----------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d 201 (688)
.... +.. +...+|..... ....+..+..+|+|+.+++.++++++.+++++++|| ++.|.....
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 191 (258)
T PRK14268 114 AYGPRIHGANKKDLDGVVENALRSAALWDET--SDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTA 191 (258)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCCcch--hhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHH
Confidence 5321 100 01111110000 011345667899999999999999999999999999 777778888
Q ss_pred HHHHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 202 VLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 202 ~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
.+..+++++.+ +..+|+.||.++ ...+++.
T Consensus 192 ~l~~~l~~l~~---~~tiiivsH~~~~~~~~~d~ 222 (258)
T PRK14268 192 RIEDLIMNLKK---DYTIVIVTHNMQQAARISDY 222 (258)
T ss_pred HHHHHHHHHhh---CCEEEEEECCHHHHHHhCCE
Confidence 88888888742 478999999885 3455543
No 362
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.81 E-value=1.5e-08 Score=94.45 Aligned_cols=104 Identities=27% Similarity=0.389 Sum_probs=73.3
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhcccccceeceeeeeccc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC 157 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~ 157 (688)
+..|+.++|.|+|||||||++..+. +. ... ..+- +.. ... ..++|...
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~--G~-~~~---~~G~-i~~-~~~--------------------~~i~~~~~---- 70 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIA--GE-LEP---DEGI-VTW-GST--------------------VKIGYFEQ---- 70 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHc--CC-CCC---CceE-EEE-CCe--------------------EEEEEEcc----
Confidence 5689999999999999999987542 22 111 1121 111 110 13343311
Q ss_pred ccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEeccccc
Q 005605 158 SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (688)
Q Consensus 158 ~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~ 227 (688)
+|+|+.+++.++++++.+++++|+|| ++.|....+.+.+.++++ +..+++.||..+
T Consensus 71 ---------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~-----~~til~~th~~~ 128 (144)
T cd03221 71 ---------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY-----PGTVILVSHDRY 128 (144)
T ss_pred ---------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc-----CCEEEEEECCHH
Confidence 99999999999999999999999999 666666677777777664 357888899874
No 363
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.81 E-value=5e-09 Score=118.04 Aligned_cols=71 Identities=20% Similarity=0.338 Sum_probs=60.6
Q ss_pred cccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHc
Q 005605 161 RTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 161 ~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~ 233 (688)
+..+..+|+|+.+|+.++.+++.+++++++|| +++|......+.++++++.+. +..+|+.||.++ ...+++
T Consensus 130 ~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--g~tvii~tH~~~~~~~~~d 203 (490)
T PRK10938 130 DRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQS--GITLVLVLNRFDEIPDFVQ 203 (490)
T ss_pred hCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHhhCC
Confidence 55677899999999999999999999999999 888889999999999998653 678999999874 344544
No 364
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.81 E-value=1.1e-08 Score=104.84 Aligned_cols=150 Identities=24% Similarity=0.299 Sum_probs=97.6
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHh----------cC------ccCCC-----ccccCceEEEEcCCchhhhccHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll----------~~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (688)
+.+|+.++|+|+|||||||++..+.- .+ .++.. ....+.+.++++.+.... .++.+++
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l 104 (250)
T PRK14262 26 IFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNV 104 (250)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHH
Confidence 56899999999999999999875431 11 01100 001234667777766554 6777776
Q ss_pred HHhhcc---cc-----------cceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhH
Q 005605 137 AEEMDV---TI-----------GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (688)
Q Consensus 137 ~~~~~~---~~-----------~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (688)
...... .. ...+|..... ....+..+..+|+|+.+++.++++++.+++++++|| +++|....
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~ 182 (250)
T PRK14262 105 AFGPRIHGVKSKHKLDRIVEESLKKAALWDEV--KSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIAT 182 (250)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh--HHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHH
Confidence 532110 00 0011110000 011345667899999999999999999999999999 77777778
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHc
Q 005605 201 DVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 201 d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~ 233 (688)
+.+..+++++.+ +..+|+.||.++ ...+++
T Consensus 183 ~~l~~~l~~~~~---~~tili~sH~~~~~~~~~d 213 (250)
T PRK14262 183 QRIEKLLEELSE---NYTIVIVTHNIGQAIRIAD 213 (250)
T ss_pred HHHHHHHHHHhc---CcEEEEEeCCHHHHHHhCC
Confidence 888888888743 468899999875 344554
No 365
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.80 E-value=1.1e-08 Score=104.78 Aligned_cols=65 Identities=11% Similarity=0.154 Sum_probs=55.3
Q ss_pred cccc-ccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEecccccH
Q 005605 162 TVLK-YLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (688)
Q Consensus 162 ~~i~-~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~~ 228 (688)
..+. .+|+|+.+++.++++++.+++++|+|| +++|....+.+..+++.+.+. +..+|++||.++.
T Consensus 146 ~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--g~tii~~tH~~~~ 213 (252)
T CHL00131 146 RNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTS--ENSIILITHYQRL 213 (252)
T ss_pred cccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEecCHHH
Confidence 4454 499999999999999999999999999 788888888889999887643 6789999998753
No 366
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.80 E-value=6.7e-09 Score=117.33 Aligned_cols=155 Identities=15% Similarity=0.232 Sum_probs=100.9
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhcCc-------------cCCCcc----ccCceEEEEcCCchhhhccHHHHHHHhh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLEGV-------------DIETPD----RRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~-------------~~~~~~----~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (688)
+.+|+.++|+|+|||||||++..+.-... ++.... ..+.+.++++.+......++.+++....
T Consensus 24 i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~ 103 (500)
T TIGR02633 24 VRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGN 103 (500)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhc
Confidence 56899999999999999999875331100 000000 1134667777766555667777765321
Q ss_pred ccc-----cc-----ceeceeeeecccc-c-ccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHH
Q 005605 141 DVT-----IG-----EEVGYSIRFEDCS-S-ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL 206 (688)
Q Consensus 141 ~~~-----~~-----~~vg~~~~~~~~~-~-~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~ 206 (688)
... .. ..+......-... . .+..+..+|+|+++++.++++++.+++++|+|| +++|......+.++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 183 (500)
T TIGR02633 104 EITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDI 183 (500)
T ss_pred cccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 100 00 0000000000011 1 134577899999999999999999999999999 78888889999999
Q ss_pred HHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 207 LKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 207 l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
++++.+. +..+|+.||.++ ...+++.
T Consensus 184 l~~l~~~--g~tviiitHd~~~~~~~~d~ 210 (500)
T TIGR02633 184 IRDLKAH--GVACVYISHKLNEVKAVCDT 210 (500)
T ss_pred HHHHHhC--CCEEEEEeCcHHHHHHhCCE
Confidence 9988543 678999999984 3455543
No 367
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.80 E-value=1.2e-08 Score=105.05 Aligned_cols=151 Identities=22% Similarity=0.286 Sum_probs=96.4
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhc----------C------ccCCC-----ccccCceEEEEcCCchhhhccHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLE----------G------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~----------~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (688)
+..|+.++|+|+|||||||++..+.-. + .++.. ....+.+.++++.+.... .++.+++
T Consensus 36 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl 114 (260)
T PRK10744 36 IAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNI 114 (260)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHH
Confidence 578999999999999999998754311 1 01100 001234566777765444 6777766
Q ss_pred HHhhcc--------------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhH
Q 005605 137 AEEMDV--------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (688)
Q Consensus 137 ~~~~~~--------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (688)
...... .+...+|..... ....+..+..+|+|+.+++.++++++.+++++|+|| +++|....
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~ 192 (260)
T PRK10744 115 AFGVRLFEKLSRAEMDERVEWALTKAALWNEV--KDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPIST 192 (260)
T ss_pred hhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh--HHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHH
Confidence 432110 000111110000 011245566799999999999999999999999999 67777777
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 201 DVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 201 d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
+.+..+++++. . +..+|+.||.++ ...++++
T Consensus 193 ~~l~~~L~~~~-~--~~tiii~sH~~~~~~~~~d~ 224 (260)
T PRK10744 193 GRIEELITELK-Q--DYTVVIVTHNMQQAARCSDY 224 (260)
T ss_pred HHHHHHHHHHh-c--CCeEEEEeCCHHHHHHhCCE
Confidence 78888888874 2 468899999884 3445543
No 368
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.80 E-value=9.5e-09 Score=105.18 Aligned_cols=150 Identities=19% Similarity=0.292 Sum_probs=96.7
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHh----------cCc------cCCC-----ccccCceEEEEcCCchhhhccHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVL----------EGV------DIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll----------~~~------~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (688)
+..|+.++|+|+|||||||++..+.- .+. ++.. ....+.+.++++++.... .++.+++
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl 104 (250)
T PRK14245 26 IEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENV 104 (250)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCc-ccHHHHH
Confidence 56899999999999999999886531 110 0100 001224566777665443 4677666
Q ss_pred HHhhccc--------------ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhH
Q 005605 137 AEEMDVT--------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (688)
Q Consensus 137 ~~~~~~~--------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (688)
....... ....+|..... ....+..+..+|+|+.+++.++++++.+++++|+|| +++|....
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~ 182 (250)
T PRK14245 105 AYGLRVNGVKDNAFIRQRVEETLKGAALWDEV--KDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPIST 182 (250)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHcCCCcch--hhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 4321100 00111110000 011245567899999999999999999999999999 77777888
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHc
Q 005605 201 DVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 201 d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~ 233 (688)
..+..+++++. . +..+|+.||.++ ...+++
T Consensus 183 ~~l~~~l~~~~-~--~~tiiivtH~~~~~~~~~d 213 (250)
T PRK14245 183 AKVEELIHELK-K--DYTIVIVTHNMQQAARVSD 213 (250)
T ss_pred HHHHHHHHHHh-c--CCeEEEEeCCHHHHHhhCC
Confidence 88888888873 2 468999999885 344554
No 369
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.79 E-value=4.5e-09 Score=108.61 Aligned_cols=148 Identities=22% Similarity=0.303 Sum_probs=89.7
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHH----------hcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhc--
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFV----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD-- 141 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-- 141 (688)
.|..|+.++|+|+|||||||++..+. +++.++.. ...++.+.++++.|.... .++.+++.....
T Consensus 26 ~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~~~~ 104 (275)
T cd03289 26 SISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYGKWS 104 (275)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEECCCcccch-hhHHHHhhhccCCC
Confidence 36799999999999999999887432 22221111 011235667777765443 366666631100
Q ss_pred ----ccccceeceeeeecccc-cccc----cccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHH
Q 005605 142 ----VTIGEEVGYSIRFEDCS-SART----VLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (688)
Q Consensus 142 ----~~~~~~vg~~~~~~~~~-~~~~----~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i 210 (688)
......+|......... ..++ .-..+|+|+.+++.++++++.+++++|+|| ++.|......+...++.+
T Consensus 105 ~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~ 184 (275)
T cd03289 105 DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQA 184 (275)
T ss_pred HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHh
Confidence 01111222110000000 0001 123499999999999999999999999999 566666666666666654
Q ss_pred HhcCCCcEEEEecccccH
Q 005605 211 LKNRPDLKLVVMSATLEA 228 (688)
Q Consensus 211 ~~~~~~~~vil~SAT~~~ 228 (688)
..+..+|++||.++.
T Consensus 185 ---~~~~tii~isH~~~~ 199 (275)
T cd03289 185 ---FADCTVILSEHRIEA 199 (275)
T ss_pred ---cCCCEEEEEECCHHH
Confidence 236789999999854
No 370
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.79 E-value=1.2e-08 Score=104.69 Aligned_cols=151 Identities=20% Similarity=0.285 Sum_probs=98.8
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH--h--------cCc------cCCCc-----cccCceEEEEcCCchhhhccHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV--L--------EGV------DIETP-----DRRRKMMIACTQPRRVAAMSVSRRV 136 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l--l--------~~~------~~~~~-----~~~~~~~i~~t~p~~~~~~~v~~~v 136 (688)
+..|+.++|+|+|||||||++..+. . .|. ++... ...+.+.++++++.... .++.+++
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl 106 (252)
T PRK14239 28 FYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENV 106 (252)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCc-CcHHHHH
Confidence 5689999999999999999988653 1 110 01000 01234667777776554 6787777
Q ss_pred HHhh---cccc-----------cceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhH
Q 005605 137 AEEM---DVTI-----------GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (688)
Q Consensus 137 ~~~~---~~~~-----------~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (688)
.... +... ...+|..... ....+..+..+|+|+.+++.++++++.+++++|+|| ++.|....
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 184 (252)
T PRK14239 107 VYGLRLKGIKDKQVLDEAVEKSLKGASIWDEV--KDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISA 184 (252)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHcCCchhH--HHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHH
Confidence 5321 1000 0011110000 011245667899999999999999999999999999 77777888
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 201 DVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 201 d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
..+..+++.+.+ +..+|+.||.++ ...+++.
T Consensus 185 ~~l~~~l~~~~~---~~tii~~sH~~~~~~~~~d~ 216 (252)
T PRK14239 185 GKIEETLLGLKD---DYTMLLVTRSMQQASRISDR 216 (252)
T ss_pred HHHHHHHHHHhh---CCeEEEEECCHHHHHHhCCE
Confidence 888888888743 368999999885 3455543
No 371
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.79 E-value=1.2e-08 Score=104.58 Aligned_cols=151 Identities=20% Similarity=0.281 Sum_probs=96.3
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHh----------cC------ccCCCc-----cccCceEEEEcCCchhhhccHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIETP-----DRRRKMMIACTQPRRVAAMSVSRRV 136 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll----------~~------~~~~~~-----~~~~~~~i~~t~p~~~~~~~v~~~v 136 (688)
+..|+.++|+|+|||||||++..+.= .+ .++... ...+.+.++++++.... .++.+++
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl 105 (251)
T PRK14251 27 FEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNV 105 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCC-CcHHHHH
Confidence 57899999999999999998874331 11 111100 01234556666665443 5777776
Q ss_pred HHhhc---cc-----------ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhH
Q 005605 137 AEEMD---VT-----------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (688)
Q Consensus 137 ~~~~~---~~-----------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (688)
..... .. ....+|... ......+..+..+|+|+.+++.++++++.+++++|+|| +++|....
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~ 183 (251)
T PRK14251 106 AYGLKIAGVKDKELIDQRVEESLKQAAIWK--ETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISS 183 (251)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHcCCCc--chHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHH
Confidence 53211 00 001111100 00011245667899999999999999999999999999 67777777
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 201 DVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 201 d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
+.+..+++++.+ +..+|++||.++ ...+++.
T Consensus 184 ~~l~~~l~~~~~---~~tiiiisH~~~~~~~~~d~ 215 (251)
T PRK14251 184 SEIEETLMELKH---QYTFIMVTHNLQQAGRISDQ 215 (251)
T ss_pred HHHHHHHHHHHc---CCeEEEEECCHHHHHhhcCE
Confidence 888888888742 468999999885 3455543
No 372
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.79 E-value=4.1e-07 Score=107.50 Aligned_cols=134 Identities=12% Similarity=0.087 Sum_probs=84.0
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecC-CCCHHHhhcccCCCCCCC
Q 005605 260 RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYS-TLPPAMQQKIFEPAPPPS 338 (688)
Q Consensus 260 ~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~-~l~~~~r~~~~~~~~~g~ 338 (688)
.++.+.+...+..+. ..+|++|||+++.+..+.+++.|... ...++ ..| +.+ +.++.+.|+.+
T Consensus 630 ~~~~~~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~---------~~~~l-~Qg~~~~---~~~l~~~F~~~- 693 (820)
T PRK07246 630 EVYAEEIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQW---------QVSHL-AQEKNGT---AYNIKKRFDRG- 693 (820)
T ss_pred HHHHHHHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhc---------CCcEE-EeCCCcc---HHHHHHHHHcC-
Confidence 456666677776655 35789999999999999999888642 22332 223 222 34466677766
Q ss_pred CCCCCCceEEEEecCccccCcccCC--eEEEEcCCcccceeecCC----------CCccc--ceeeecchhhHHhhcccc
Q 005605 339 KEGGPPGRKIVVSTNIAETSLTIDG--IVYVIDPGFAKQKVYNPR----------VRVES--LLVSPISKASAHQRSGRA 404 (688)
Q Consensus 339 ~~~~~~~~kvlvaTniae~gi~i~~--V~~VId~g~~k~~~~~~~----------~~~~~--l~~~p~s~~~~~qR~GRa 404 (688)
...|+++|+-.--|||+|+ ...||=.++.-..-.||. .|-+. -...|.-.-...|=+||.
T Consensus 694 ------~~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRL 767 (820)
T PRK07246 694 ------EQQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRT 767 (820)
T ss_pred ------CCeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhccc
Confidence 6789999999999999973 444443444322111211 01111 112255556678999999
Q ss_pred CCC--CCceEEEc
Q 005605 405 GRT--QPGKCFRL 415 (688)
Q Consensus 405 GR~--~~G~~~~l 415 (688)
=|. -.|..+-|
T Consensus 768 IRs~~D~Gvv~il 780 (820)
T PRK07246 768 MRREDQKSAVLIL 780 (820)
T ss_pred ccCCCCcEEEEEE
Confidence 998 36876644
No 373
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.78 E-value=1.4e-08 Score=104.53 Aligned_cols=152 Identities=17% Similarity=0.259 Sum_probs=98.1
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhc----------C------ccCCC-----ccccCceEEEEcCCchhhhccHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLE----------G------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~----------~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (688)
+.+|+.++|+|+|||||||++..+.=. + .++.. ....+.+.++++.+......++.+++
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl 106 (258)
T PRK14241 27 IEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNV 106 (258)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHH
Confidence 568999999999999999998754311 1 11100 00112455666665555556777776
Q ss_pred HHhhccc--------------ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhH
Q 005605 137 AEEMDVT--------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (688)
Q Consensus 137 ~~~~~~~--------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (688)
....... +...+|..... ....+..+..+|+|+.+++.++++++.+++++|+|| +++|....
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 184 (258)
T PRK14241 107 VAGLKLNGVRNKKDLDELVEKSLRGANLWNEV--KDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPIST 184 (258)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh--hhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 5321100 00111110000 012345667899999999999999999999999999 77777888
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 201 DVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 201 d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
..+..+++.+.+ +..+|+.||.++ ...+++.
T Consensus 185 ~~l~~~l~~~~~---~~tviivsH~~~~~~~~~d~ 216 (258)
T PRK14241 185 LAIEDLINELKQ---DYTIVIVTHNMQQAARVSDQ 216 (258)
T ss_pred HHHHHHHHHHhc---CCEEEEEecCHHHHHHhCCE
Confidence 888888888742 468999999885 3455543
No 374
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.78 E-value=9.2e-09 Score=116.29 Aligned_cols=156 Identities=16% Similarity=0.249 Sum_probs=97.8
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCcc----ccCceEEEEcCCc---hhhhccHHHHHHH
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD----RRRKMMIACTQPR---RVAAMSVSRRVAE 138 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~----~~~~~~i~~t~p~---~~~~~~v~~~v~~ 138 (688)
.+.+|+.++|+|+|||||||++..+. +++.++.... ...++.++++.+. .....++.+++..
T Consensus 285 ~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~ 364 (510)
T PRK15439 285 EVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCA 364 (510)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHh
Confidence 36789999999999999999987433 1111111100 0123445555431 2223455555432
Q ss_pred h----hcccc--c---ceec-eeeeeccc-ccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHH
Q 005605 139 E----MDVTI--G---EEVG-YSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (688)
Q Consensus 139 ~----~~~~~--~---~~vg-~~~~~~~~-~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ 205 (688)
. ..... . ..+. +-..++-. ...+..+..+|+|+.+++.++++++.++++||||| +++|......+..
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~ 444 (510)
T PRK15439 365 LTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQ 444 (510)
T ss_pred hhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHH
Confidence 1 00000 0 0000 00001111 12356678899999999999999999999999999 8888888999999
Q ss_pred HHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 206 LLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 206 ~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
+++++.+. +..+|+.||.++ +..+++.
T Consensus 445 ~l~~l~~~--g~tiIivsHd~~~i~~~~d~ 472 (510)
T PRK15439 445 LIRSIAAQ--NVAVLFISSDLEEIEQMADR 472 (510)
T ss_pred HHHHHHhC--CCEEEEECCCHHHHHHhCCE
Confidence 99988664 678999999984 4555543
No 375
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.77 E-value=3.3e-08 Score=101.76 Aligned_cols=155 Identities=15% Similarity=0.119 Sum_probs=92.9
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCcc--ccCceEEEEcCCchhhhccHHHHHHHhh---ccccc---cee
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPD--RRRKMMIACTQPRRVAAMSVSRRVAEEM---DVTIG---EEV 148 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~--~~~~~~i~~t~p~~~~~~~v~~~v~~~~---~~~~~---~~v 148 (688)
.+..|+.++|+|+|||||||++..+.-... ..... .......+...+......++.+++.... +.... ..+
T Consensus 46 ~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~ 124 (264)
T PRK13546 46 KAYEGDVIGLVGINGSGKSTLSNIIGGSLS-PTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMT 124 (264)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHH
Confidence 367999999999999999999886532111 11100 0001112222322223346666654221 11000 000
Q ss_pred ceeeeecc-cccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEeccc
Q 005605 149 GYSIRFED-CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSAT 225 (688)
Q Consensus 149 g~~~~~~~-~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT 225 (688)
........ ....+..+..+|+|+.+++.++++++.+++++|||| .++|......+..++..+.+. +..+|+.||.
T Consensus 125 ~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~--g~tiIiisH~ 202 (264)
T PRK13546 125 PKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQ--NKTIFFVSHN 202 (264)
T ss_pred HHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHC--CCEEEEEcCC
Confidence 00000000 011345667899999999999999999999999999 667777777788888887432 6789999998
Q ss_pred cc-HHHHHch
Q 005605 226 LE-AEKFQGY 234 (688)
Q Consensus 226 ~~-~~~~~~~ 234 (688)
++ ...+++.
T Consensus 203 ~~~i~~~~d~ 212 (264)
T PRK13546 203 LGQVRQFCTK 212 (264)
T ss_pred HHHHHHHcCE
Confidence 74 3555543
No 376
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.77 E-value=1.5e-08 Score=103.78 Aligned_cols=150 Identities=23% Similarity=0.307 Sum_probs=96.8
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHh----------cC------ccCCC-----ccccCceEEEEcCCchhhhccHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll----------~~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (688)
+..|+.++|+|+|||||||++..+.- .+ .++.. ....+.+.++++.+.... .++.+++
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni 104 (250)
T PRK14240 26 IEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNV 104 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCc-ccHHHHH
Confidence 56899999999999999999875431 11 01100 001224566777665544 6777776
Q ss_pred HHhhccc-c-------------cceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhH
Q 005605 137 AEEMDVT-I-------------GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (688)
Q Consensus 137 ~~~~~~~-~-------------~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (688)
....... . ...++..... ....+..+..+|+|+.+++.++++++.+++++|+|| +++|....
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~ 182 (250)
T PRK14240 105 AYGPRTHGIKDKKKLDEIVEKSLKGAALWDEV--KDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPIST 182 (250)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh--HHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 5321100 0 0001100000 011245567899999999999999999999999999 77777888
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHc
Q 005605 201 DVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 201 d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~ 233 (688)
..+..+++++. . +..+|+.||.++ +..+++
T Consensus 183 ~~l~~~l~~~~-~--~~tiii~sH~~~~~~~~~d 213 (250)
T PRK14240 183 LKIEELIQELK-K--DYTIVIVTHNMQQASRISD 213 (250)
T ss_pred HHHHHHHHHHh-c--CCeEEEEEeCHHHHHhhCC
Confidence 88888888873 2 568999999985 344444
No 377
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.77 E-value=1.2e-08 Score=115.23 Aligned_cols=156 Identities=16% Similarity=0.249 Sum_probs=100.7
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHHhc------------CccCCCc----cccCceEEEEcCCc---hhhhccHHHHHH
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFVLE------------GVDIETP----DRRRKMMIACTQPR---RVAAMSVSRRVA 137 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~------------~~~~~~~----~~~~~~~i~~t~p~---~~~~~~v~~~v~ 137 (688)
.+.+|+.++|+|+|||||||++..+.-. +.++... ...+.+.++++.+. .....++.+++.
T Consensus 284 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~ 363 (506)
T PRK13549 284 SLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNIT 363 (506)
T ss_pred EEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhh
Confidence 3679999999999999999998754311 1111100 00123566666642 233457776664
Q ss_pred Hhhc--c-c---cc-----ceec-eeeeeccc-ccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHH
Q 005605 138 EEMD--V-T---IG-----EEVG-YSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (688)
Q Consensus 138 ~~~~--~-~---~~-----~~vg-~~~~~~~~-~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ 202 (688)
.... . . .. ..+. +-.++.-. ...+..+..+|+|+.+++.++++++.+++++|||| +++|......
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~ 443 (506)
T PRK13549 364 LAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYE 443 (506)
T ss_pred hhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHH
Confidence 3210 0 0 00 0000 00011110 12355677899999999999999999999999999 7888888888
Q ss_pred HHHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 203 LFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 203 ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
+..+++.+.+. +..+|+.||.++ +..++++
T Consensus 444 l~~~l~~l~~~--g~tvi~~sHd~~~~~~~~d~ 474 (506)
T PRK13549 444 IYKLINQLVQQ--GVAIIVISSELPEVLGLSDR 474 (506)
T ss_pred HHHHHHHHHHC--CCEEEEECCCHHHHHHhCCE
Confidence 99999987654 678999999985 4556654
No 378
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.77 E-value=9.4e-09 Score=129.08 Aligned_cols=156 Identities=18% Similarity=0.207 Sum_probs=105.7
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC--ccccCceEEEEcCCchhhhccHHHHHHHh---hc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEE---MD 141 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~---~~ 141 (688)
+.+|+.+++.|+|||||||++..+. +++.++.. ....+.++++++.+.....+++.+.+... .+
T Consensus 1962 I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g 2041 (2272)
T TIGR01257 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG 2041 (2272)
T ss_pred EcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC
Confidence 5689999999999999999988433 22222211 01123466777776655567777776432 11
Q ss_pred cc---ccceeceee-eecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCC
Q 005605 142 VT---IGEEVGYSI-RFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRP 215 (688)
Q Consensus 142 ~~---~~~~vg~~~-~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~ 215 (688)
.. ....+.... .++-....+..+..+|+|+++++.++.+++.++++++||| +++|......+.++++++.+.
T Consensus 2042 ~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~-- 2119 (2272)
T TIGR01257 2042 VPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE-- 2119 (2272)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC--
Confidence 10 000000000 0001112356678899999999999999999999999999 888899999999999988654
Q ss_pred CcEEEEeccccc-HHHHHchh
Q 005605 216 DLKLVVMSATLE-AEKFQGYF 235 (688)
Q Consensus 216 ~~~vil~SAT~~-~~~~~~~~ 235 (688)
+..+|+.||.++ ++.+++..
T Consensus 2120 g~TIILtTH~mee~e~lcDrV 2140 (2272)
T TIGR01257 2120 GRAVVLTSHSMEECEALCTRL 2140 (2272)
T ss_pred CCEEEEEeCCHHHHHHhCCEE
Confidence 678999999994 56676553
No 379
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.76 E-value=1e-08 Score=116.65 Aligned_cols=152 Identities=20% Similarity=0.319 Sum_probs=98.1
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhc----------------CccCCCcc-------ccCceEEEEcCCc--hhhhccH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLE----------------GVDIETPD-------RRRKMMIACTQPR--RVAAMSV 132 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~----------------~~~~~~~~-------~~~~~~i~~t~p~--~~~~~~v 132 (688)
+..|+.++|+|+|||||||++..+.-. +.++.... ..+.+.++++.+. .....++
T Consensus 32 i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~ 111 (529)
T PRK15134 32 IEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTL 111 (529)
T ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhH
Confidence 568999999999999999997743211 11111000 0124667777763 2222344
Q ss_pred HHHHHHhh----cc----------cccceeceeeeeccc-ccccccccccCHHHHHHHHhccccccCCcEEeecc--cCc
Q 005605 133 SRRVAEEM----DV----------TIGEEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHE 195 (688)
Q Consensus 133 ~~~v~~~~----~~----------~~~~~vg~~~~~~~~-~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--ahe 195 (688)
.+.+.... +. .....+|.. .. ...+..+..+|+|+.+|+.++++++.+++++++|| +++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~L 187 (529)
T PRK15134 112 EKQLYEVLSLHRGMRREAARGEILNCLDRVGIR----QAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTAL 187 (529)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCC----ChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCcc
Confidence 44443211 10 001111110 00 01245677899999999999999999999999999 888
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 196 RTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 196 r~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
|......++++++++.+.. +..+|+.||.++ +..+++.
T Consensus 188 D~~~~~~l~~~l~~l~~~~-g~tvi~vtHd~~~~~~~~dr 226 (529)
T PRK15134 188 DVSVQAQILQLLRELQQEL-NMGLLFITHNLSIVRKLADR 226 (529)
T ss_pred CHHHHHHHHHHHHHHHHhc-CCeEEEEcCcHHHHHHhcCE
Confidence 8888999999999986543 678999999985 3445543
No 380
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.76 E-value=1.8e-08 Score=104.00 Aligned_cols=151 Identities=17% Similarity=0.272 Sum_probs=95.8
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHHh----------cC------ccCCC-----ccccCceEEEEcCCchhhhccHHHH
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRR 135 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll----------~~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~ 135 (688)
.+..|+.++|+|+|||||||++..+.- .+ .++.. ....+.+.++++.+.... .++.++
T Consensus 32 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~en 110 (264)
T PRK14243 32 DIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDN 110 (264)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCcccc-ccHHHH
Confidence 367899999999999999999875431 11 01100 001224566666654443 367666
Q ss_pred HHHhhccc------------ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHH
Q 005605 136 VAEEMDVT------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (688)
Q Consensus 136 v~~~~~~~------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d 201 (688)
+....... ....+|..... ....+..+..+|+|+.+++.++++++.+++++|+|| +++|.....
T Consensus 111 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 188 (264)
T PRK14243 111 IAYGARINGYKGDMDELVERSLRQAALWDEV--KDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTL 188 (264)
T ss_pred HHhhhhhcCcchHHHHHHHHHHHHhCchhhH--HHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 64321100 00011110000 011244566799999999999999999999999999 677777778
Q ss_pred HHHHHHHHHHhcCCCcEEEEeccccc-HHHHHc
Q 005605 202 VLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 202 ~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~ 233 (688)
.+.++++.+.+ +..+|+.||.++ ...+++
T Consensus 189 ~l~~~L~~~~~---~~tvi~vtH~~~~~~~~~d 218 (264)
T PRK14243 189 RIEELMHELKE---QYTIIIVTHNMQQAARVSD 218 (264)
T ss_pred HHHHHHHHHhc---CCEEEEEecCHHHHHHhCC
Confidence 88888888743 358899999874 455554
No 381
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.76 E-value=9.5e-09 Score=116.07 Aligned_cols=155 Identities=16% Similarity=0.265 Sum_probs=99.0
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHh------------cCccCCCc----cccCceEEEEcCCc---hhhhccHHHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVL------------EGVDIETP----DRRRKMMIACTQPR---RVAAMSVSRRVAE 138 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll------------~~~~~~~~----~~~~~~~i~~t~p~---~~~~~~v~~~v~~ 138 (688)
+..|+.++|+|+|||||||++..+.- ++.++... ...+.+.++++.+. .....++.+++..
T Consensus 283 i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~ 362 (500)
T TIGR02633 283 LRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITL 362 (500)
T ss_pred EeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcc
Confidence 67999999999999999999875431 11111000 00123556666542 3344566665532
Q ss_pred hhccccc-----------ceec-eeeeeccc-ccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHH
Q 005605 139 EMDVTIG-----------EEVG-YSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (688)
Q Consensus 139 ~~~~~~~-----------~~vg-~~~~~~~~-~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~l 203 (688)
....... ..+. +-.+++-. ...+..+..+|+|+.+++.++++++.+++++|||| +++|......+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 442 (500)
T TIGR02633 363 SVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEI 442 (500)
T ss_pred hhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHH
Confidence 1100000 0000 00011111 12356677899999999999999999999999999 78888888889
Q ss_pred HHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 204 FGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 204 l~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
.++++.+.+. +..+|+.||.++ +..++++
T Consensus 443 ~~~l~~l~~~--g~tviivsHd~~~~~~~~d~ 472 (500)
T TIGR02633 443 YKLINQLAQE--GVAIIVVSSELAEVLGLSDR 472 (500)
T ss_pred HHHHHHHHhC--CCEEEEECCCHHHHHHhCCE
Confidence 9999888654 678999999985 4555554
No 382
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.76 E-value=1.9e-07 Score=107.58 Aligned_cols=122 Identities=21% Similarity=0.213 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCC
Q 005605 261 DYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKE 340 (688)
Q Consensus 261 ~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~ 340 (688)
.+..+.+..+..+|. .+-+|||-+.+.+.-+.+++.|... ++..-.|.+.-...+-..+-+.-..|
T Consensus 433 eK~~Ai~~ei~~~~~--~GrPVLVGT~SVe~SE~ls~~L~~~---------gi~h~VLNAk~~~~EA~IIa~AG~~G--- 498 (913)
T PRK13103 433 EKYAAIITDIKECMA--LGRPVLVGTATIETSEHMSNLLKKE---------GIEHKVLNAKYHEKEAEIIAQAGRPG--- 498 (913)
T ss_pred HHHHHHHHHHHHHHh--CCCCEEEEeCCHHHHHHHHHHHHHc---------CCcHHHhccccchhHHHHHHcCCCCC---
Confidence 344555666666664 3558999999999999999999874 44444455554444444443443333
Q ss_pred CCCCceEEEEecCccccCcccC--------------------------------Ce-----EEEEcCCcccceeecCCCC
Q 005605 341 GGPPGRKIVVSTNIAETSLTID--------------------------------GI-----VYVIDPGFAKQKVYNPRVR 383 (688)
Q Consensus 341 ~~~~~~kvlvaTniae~gi~i~--------------------------------~V-----~~VId~g~~k~~~~~~~~~ 383 (688)
.|.||||.|.||-||. +| -|||=+..
T Consensus 499 ------aVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTer----------- 561 (913)
T PRK13103 499 ------ALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASER----------- 561 (913)
T ss_pred ------cEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeecc-----------
Confidence 7999999999999994 12 36666555
Q ss_pred cccceeeecchhhHHhhccccCCC-CCceEEEccchhh
Q 005605 384 VESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKS 420 (688)
Q Consensus 384 ~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~ 420 (688)
+-|.--=.|=.|||||. .||.+-.+.+-++
T Consensus 562 -------heSrRID~QLrGRaGRQGDPGsS~f~lSlED 592 (913)
T PRK13103 562 -------HESRRIDNQLRGRAGRQGDPGSSRFYLSLED 592 (913)
T ss_pred -------CchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 55655556889999999 8999877776544
No 383
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=7.9e-09 Score=114.95 Aligned_cols=144 Identities=25% Similarity=0.364 Sum_probs=88.6
Q ss_pred HHhcCCEEEEEeCCCCChhcchh-----------HHHhcCccCCCc---cccCceEEEEcCCchhhhccHHHHHHHhhcc
Q 005605 77 VLKANQVIILVGETGSGKTTQIP-----------QFVLEGVDIETP---DRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~-----------~~ll~~~~~~~~---~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (688)
.|..|++++++||+|+||||.+. ++++|+.++.+. ...+.+.++-++| .+-.-++.++++-....
T Consensus 490 ti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEP-vLFs~sI~eNI~YG~~~ 568 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEP-VLFSGSIRENIAYGLDN 568 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccc-eeecccHHHHHhcCCCC
Confidence 57899999999999999999765 455666655432 2234455554444 44456777777532210
Q ss_pred ----------cc--------cceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecccC--cChhhHHH
Q 005605 143 ----------TI--------GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAH--ERTLATDV 202 (688)
Q Consensus 143 ----------~~--------~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEah--er~~~~d~ 202 (688)
+. .-.-||.... ..+=..+|+|++||++++++++.+|.++|||||- +|...-..
T Consensus 569 ~t~e~i~~AAk~ANah~FI~~~p~gY~T~V------GEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~l 642 (716)
T KOG0058|consen 569 ATDEEIEAAAKMANAHEFITNFPDGYNTVV------GEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYL 642 (716)
T ss_pred CCHHHHHHHHHHhChHHHHHhCcccccccc------CCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHH
Confidence 00 0011222111 1111358999999999999999999999999964 33333333
Q ss_pred HHHHHHHHHhcCCCcEEEEecccccHHH
Q 005605 203 LFGLLKEVLKNRPDLKLVVMSATLEAEK 230 (688)
Q Consensus 203 ll~~l~~i~~~~~~~~vil~SAT~~~~~ 230 (688)
+.+.+.++. .++.+|++-|-+..-+
T Consensus 643 Vq~aL~~~~---~~rTVlvIAHRLSTV~ 667 (716)
T KOG0058|consen 643 VQEALDRLM---QGRTVLVIAHRLSTVR 667 (716)
T ss_pred HHHHHHHhh---cCCeEEEEehhhhHhh
Confidence 444444433 3568888888775433
No 384
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.76 E-value=1.7e-08 Score=105.16 Aligned_cols=150 Identities=18% Similarity=0.264 Sum_probs=96.2
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhc----------C------ccCCC-----ccccCceEEEEcCCchhhhccHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLE----------G------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~----------~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (688)
+..|+.++|+|+|||||||++..+.-. + .++.. ....+.+.++++.+.... .++.+++
T Consensus 62 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl 140 (285)
T PRK14254 62 IPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFP-KSIYDNV 140 (285)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCc-CCHHHHH
Confidence 678999999999999999998754311 1 11100 011234566777665444 3677766
Q ss_pred HHhhcc---c---------ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHH
Q 005605 137 AEEMDV---T---------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (688)
Q Consensus 137 ~~~~~~---~---------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ 202 (688)
...... . ....+|..... ....+..+..+|+|+.+++.++++++.+++++|||| +++|......
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i--~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~ 218 (285)
T PRK14254 141 AYGLKIQGYDGDIDERVEESLRRAALWDEV--KDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSK 218 (285)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHcCCCchh--HHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHH
Confidence 432110 0 00111110000 011245667899999999999999999999999999 7777777788
Q ss_pred HHHHHHHHHhcCCCcEEEEecccccH-HHHHc
Q 005605 203 LFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (688)
Q Consensus 203 ll~~l~~i~~~~~~~~vil~SAT~~~-~~~~~ 233 (688)
+..+++.+.+ +..+|+.||.++. ..+++
T Consensus 219 l~~~L~~~~~---~~tiii~tH~~~~i~~~~d 247 (285)
T PRK14254 219 IEDLIEELAE---EYTVVIVTHNMQQAARISD 247 (285)
T ss_pred HHHHHHHHhc---CCEEEEEeCCHHHHHhhcC
Confidence 8888888754 3578999998853 44554
No 385
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.76 E-value=1.3e-08 Score=106.17 Aligned_cols=152 Identities=17% Similarity=0.220 Sum_probs=97.0
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHHhc----------------CccCCCc-----cccCceEEEEcCCchhhhccHHHH
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFVLE----------------GVDIETP-----DRRRKMMIACTQPRRVAAMSVSRR 135 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~----------------~~~~~~~-----~~~~~~~i~~t~p~~~~~~~v~~~ 135 (688)
.+..|+.++|+|++||||||++..+.-. +.++... ...+.+.++++.+.... .++.++
T Consensus 61 ~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~en 139 (286)
T PRK14275 61 DILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFP-KSIFDN 139 (286)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCc-cCHHHH
Confidence 3678999999999999999998754311 1111000 01234566776665443 377777
Q ss_pred HHHhhc---cc-----------ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhh
Q 005605 136 VAEEMD---VT-----------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLA 199 (688)
Q Consensus 136 v~~~~~---~~-----------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~ 199 (688)
+..... .. ....+|..... ....+..+..+|+|+.+++.++++++.+++++|+|| +++|...
T Consensus 140 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~ 217 (286)
T PRK14275 140 IAYGPRLHGINDKKQLEEIVEKSLRKAALWDEV--SDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKA 217 (286)
T ss_pred HHhHHHhcCCCcHHHHHHHHHHHHHHhCCccch--hhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 653211 00 00111110000 012345677899999999999999999999999999 6777777
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEecccccH-HHHHch
Q 005605 200 TDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (688)
Q Consensus 200 ~d~ll~~l~~i~~~~~~~~vil~SAT~~~-~~~~~~ 234 (688)
...+..+++++.. +..+|+.||.++. ..+++.
T Consensus 218 ~~~l~~~L~~~~~---~~tvIivsH~~~~~~~~~d~ 250 (286)
T PRK14275 218 TAKIEDLIQELRG---SYTIMIVTHNMQQASRVSDY 250 (286)
T ss_pred HHHHHHHHHHHhc---CCeEEEEeCCHHHHHHhCCE
Confidence 7778888887643 4678999998753 445543
No 386
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.75 E-value=2.8e-08 Score=102.26 Aligned_cols=150 Identities=20% Similarity=0.279 Sum_probs=97.1
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhc----------C------ccCCC-----ccccCceEEEEcCCchhhhccHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLE----------G------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~----------~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (688)
+..|+.++|+|+|||||||++..+.-. + .++.. ......+.++++++.... .++.+++
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl 108 (259)
T PRK14260 30 IYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENV 108 (259)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCC-ccHHHHH
Confidence 568999999999999999998754411 1 01100 001224566777765554 6777776
Q ss_pred HHhhcc--------------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhH
Q 005605 137 AEEMDV--------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (688)
Q Consensus 137 ~~~~~~--------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (688)
...... .+...+|..... ....+..+..+|+|+.+++.++++++.+++++++|| ++.|....
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~ 186 (259)
T PRK14260 109 AYGVRISAKLPQADLDEIVESALKGAALWQEV--KDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIAT 186 (259)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh--hhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 432110 001111110000 012345667899999999999999999999999999 67777777
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHc
Q 005605 201 DVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 201 d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~ 233 (688)
..+..+++.+.+ +..+|++||.++ ...+++
T Consensus 187 ~~l~~~l~~~~~---~~tiii~tH~~~~i~~~~d 217 (259)
T PRK14260 187 MKVEELIHSLRS---ELTIAIVTHNMQQATRVSD 217 (259)
T ss_pred HHHHHHHHHHhc---CCEEEEEeCCHHHHHHhcC
Confidence 778888888743 468899999884 345554
No 387
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.75 E-value=1.9e-08 Score=104.14 Aligned_cols=155 Identities=21% Similarity=0.320 Sum_probs=104.2
Q ss_pred HHhcCCEEEEEeCCCCChhcchh----------------HHHhcCccCCCc-------cccCceEEEEcCCch--hhhcc
Q 005605 77 VLKANQVIILVGETGSGKTTQIP----------------QFVLEGVDIETP-------DRRRKMMIACTQPRR--VAAMS 131 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~----------------~~ll~~~~~~~~-------~~~~~~~i~~t~p~~--~~~~~ 131 (688)
.+..|+.+.++|++|||||.... .+.+++.++-.. -....+.++++.|-- -...+
T Consensus 32 ~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~t 111 (534)
T COG4172 32 DIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHT 111 (534)
T ss_pred eecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhH
Confidence 36789999999999999997543 123333332210 012356677877632 12334
Q ss_pred HHHHHHH--------------hhcccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeeccc--Cc
Q 005605 132 VSRRVAE--------------EMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEA--HE 195 (688)
Q Consensus 132 v~~~v~~--------------~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEa--he 195 (688)
+-+.+++ .+...+...||.. +.....+..++.+|+|+.+|++++.+++++|+++|-||. -+
T Consensus 112 Ig~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~---~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTAL 188 (534)
T COG4172 112 IGKQLAEVLRLHRGLSRAAARARALELLELVGIP---EPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTAL 188 (534)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCC---chhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchh
Confidence 4333332 2233445566643 122334667889999999999999999999999999992 23
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHchh
Q 005605 196 RTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGYF 235 (688)
Q Consensus 196 r~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~~ 235 (688)
|..-.-.++++++.+.++. +..++++||++. +..|+++.
T Consensus 189 DVtvQaQIL~Ll~~Lq~~~-gMa~lfITHDL~iVr~~ADrV 228 (534)
T COG4172 189 DVTVQAQILDLLKELQAEL-GMAILFITHDLGIVRKFADRV 228 (534)
T ss_pred hhhhHHHHHHHHHHHHHHh-CcEEEEEeccHHHHHHhhhhE
Confidence 3344556899999998876 899999999996 46787764
No 388
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.75 E-value=5.4e-09 Score=104.87 Aligned_cols=147 Identities=23% Similarity=0.302 Sum_probs=90.5
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHh-----------cCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhcc-
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVL-----------EGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll-----------~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (688)
+..|+.++|+|++||||||++..+.- ++.++.. ....+.+.++++.+... ..++.+++......
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~-~~tv~enl~~~~~~~ 105 (221)
T cd03244 27 IKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLF-SGTIRSNLDPFGEYS 105 (221)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccc-cchHHHHhCcCCCCC
Confidence 56899999999999999999874431 1111100 01123455666665533 34666555311000
Q ss_pred -----cccceeceeeeec-----ccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHH
Q 005605 143 -----TIGEEVGYSIRFE-----DCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (688)
Q Consensus 143 -----~~~~~vg~~~~~~-----~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i 210 (688)
.....+|...... -.......+..+|+|+++++.++++++.+++++|+|| ++.+....+.+.++++++
T Consensus 106 ~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 185 (221)
T cd03244 106 DEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREA 185 (221)
T ss_pred HHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence 0001111110000 0001124566799999999999999999999999999 677777777788888876
Q ss_pred HhcCCCcEEEEecccccH
Q 005605 211 LKNRPDLKLVVMSATLEA 228 (688)
Q Consensus 211 ~~~~~~~~vil~SAT~~~ 228 (688)
.+ +..+|+.||..+.
T Consensus 186 ~~---~~tii~~sh~~~~ 200 (221)
T cd03244 186 FK---DCTVLTIAHRLDT 200 (221)
T ss_pred cC---CCEEEEEeCCHHH
Confidence 32 4688899998753
No 389
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.75 E-value=1.2e-08 Score=92.58 Aligned_cols=150 Identities=21% Similarity=0.278 Sum_probs=97.3
Q ss_pred HhcCCEEEEEeCCCCChhcchhHH-HhcC------------ccCCC-------ccccCceEEEEcCCchhhhccHHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQF-VLEG------------VDIET-------PDRRRKMMIACTQPRRVAAMSVSRRVA 137 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~-ll~~------------~~~~~-------~~~~~~~~i~~t~p~~~~~~~v~~~v~ 137 (688)
..+|+.+++.||+|+|||+++... +++- .++.. ...++.++++++|-..-..+++.+++.
T Consensus 25 ~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enli 104 (242)
T COG4161 25 CPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLI 104 (242)
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHH
Confidence 458999999999999999998732 2221 11111 112345567777766666777777764
Q ss_pred Hhhcccccc--------eeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHH
Q 005605 138 EEMDVTIGE--------EVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (688)
Q Consensus 138 ~~~~~~~~~--------~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l 207 (688)
+....-.|. ....-.+..-....+..+..+|+|+.+|+.++++++.+++++++|| |.+++.-+..+..++
T Consensus 105 eap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~ii 184 (242)
T COG4161 105 EAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSII 184 (242)
T ss_pred hhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHH
Confidence 321100000 0000001111122345566799999999999999999999999999 667777777888888
Q ss_pred HHHHhcCCCcEEEEecccccHH
Q 005605 208 KEVLKNRPDLKLVVMSATLEAE 229 (688)
Q Consensus 208 ~~i~~~~~~~~vil~SAT~~~~ 229 (688)
+++... ++.-++++|-.++.
T Consensus 185 kel~~t--gitqvivthev~va 204 (242)
T COG4161 185 KELAET--GITQVIVTHEVEVA 204 (242)
T ss_pred HHHHhc--CceEEEEEeehhHH
Confidence 888765 67777778887653
No 390
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.75 E-value=2.6e-08 Score=98.60 Aligned_cols=147 Identities=12% Similarity=0.157 Sum_probs=88.1
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhcCccCCCc--cccCceEEEEcCCchhhhccHHHHHHHhhcc------cccceec
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETP--DRRRKMMIACTQPRRVAAMSVSRRVAEEMDV------TIGEEVG 149 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~--~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~------~~~~~vg 149 (688)
+.+|+.++|.|++||||||++..+.-... .... .....+.+++++|... ..++.+++...... .....++
T Consensus 28 i~~G~~~~i~G~nG~GKSTLl~~i~G~~~-~~~G~i~~~g~i~~~~q~~~l~-~~t~~enl~~~~~~~~~~~~~~~~~~~ 105 (204)
T cd03250 28 VPKGELVAIVGPVGSGKSSLLSALLGELE-KLSGSVSVPGSIAYVSQEPWIQ-NGTIRENILFGKPFDEERYEKVIKACA 105 (204)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCcCC-CCCCeEEEcCEEEEEecCchhc-cCcHHHHhccCCCcCHHHHHHHHHHcC
Confidence 67999999999999999999876432111 1110 0011256677776544 45666666432110 0000111
Q ss_pred eeeeecc-----cccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHH-HHHHHHhcCCCcEEEE
Q 005605 150 YSIRFED-----CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG-LLKEVLKNRPDLKLVV 221 (688)
Q Consensus 150 ~~~~~~~-----~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~-~l~~i~~~~~~~~vil 221 (688)
....... ..........+|+|+.+++.++++++.+++++++|| ++++....+.+.. +++...+. +..+|+
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~--~~tvi~ 183 (204)
T cd03250 106 LEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLN--NKTRIL 183 (204)
T ss_pred cHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccC--CCEEEE
Confidence 1000000 001223456799999999999999999999999999 5665555555555 34443332 578999
Q ss_pred ecccccH
Q 005605 222 MSATLEA 228 (688)
Q Consensus 222 ~SAT~~~ 228 (688)
.||.++.
T Consensus 184 ~sh~~~~ 190 (204)
T cd03250 184 VTHQLQL 190 (204)
T ss_pred EeCCHHH
Confidence 9998753
No 391
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.75 E-value=1.8e-08 Score=104.19 Aligned_cols=150 Identities=17% Similarity=0.282 Sum_probs=96.6
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHh----------cC------ccCCC--c---cccCceEEEEcCCchhhhccHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIET--P---DRRRKMMIACTQPRRVAAMSVSRRV 136 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll----------~~------~~~~~--~---~~~~~~~i~~t~p~~~~~~~v~~~v 136 (688)
+..|+.++|+|+|||||||++..+.- .+ .++.. . ...+.+.++++++.... .++.+++
T Consensus 44 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl 122 (268)
T PRK14248 44 IEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFP-KSIYNNI 122 (268)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCc-ccHHHHH
Confidence 57999999999999999999875431 11 00100 0 01234567777665443 3677666
Q ss_pred HHhhccc--------------ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhH
Q 005605 137 AEEMDVT--------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (688)
Q Consensus 137 ~~~~~~~--------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (688)
....... ....+|... .-....+..+..+|+|+.+++.++++++.+++++|+|| +++|....
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~ 200 (268)
T PRK14248 123 THALKYAGERRKSVLDEIVEESLTKAALWD--EVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISN 200 (268)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHcCCCc--chHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHH
Confidence 5321100 000111100 00011245667899999999999999999999999999 77777888
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHc
Q 005605 201 DVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 201 d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~ 233 (688)
+.+..+++++.+ +..+|+.||.++ ...+++
T Consensus 201 ~~l~~~l~~~~~---~~tiii~tH~~~~~~~~~d 231 (268)
T PRK14248 201 AKIEELITELKE---EYSIIIVTHNMQQALRVSD 231 (268)
T ss_pred HHHHHHHHHHhc---CCEEEEEEeCHHHHHHhCC
Confidence 888888888743 368899999985 344554
No 392
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.74 E-value=2.1e-08 Score=103.68 Aligned_cols=150 Identities=19% Similarity=0.249 Sum_probs=95.6
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhc----------C------ccCCC-----ccccCceEEEEcCCchhhhccHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLE----------G------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~----------~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (688)
+..|+.++|+|+|||||||++..+.-. | .++.. ....+.+.++++.+.... .++.+++
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl 120 (267)
T PRK14235 42 IPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFP-KSIYENV 120 (267)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCC-CcHHHHH
Confidence 568999999999999999998754311 1 01100 001234566777665444 4777776
Q ss_pred HHhh---cc------------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhh
Q 005605 137 AEEM---DV------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLA 199 (688)
Q Consensus 137 ~~~~---~~------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~ 199 (688)
.... +. .....+|..... ....+..+..+|+|+++++.++++++.+++++|+|| +++|...
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~ 198 (267)
T PRK14235 121 AYGPRIHGLARSKAELDEIVETSLRKAGLWEEV--KDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIA 198 (267)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHcCCchhh--hHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHH
Confidence 5321 10 000111110000 001234567799999999999999999999999999 7777777
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEecccccH-HHHHc
Q 005605 200 TDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (688)
Q Consensus 200 ~d~ll~~l~~i~~~~~~~~vil~SAT~~~-~~~~~ 233 (688)
...+..+++.+.+ +..+|+.||.++. ..+++
T Consensus 199 ~~~l~~~L~~l~~---~~tiiivtH~~~~~~~~~d 230 (267)
T PRK14235 199 TAKVEELIDELRQ---NYTIVIVTHSMQQAARVSQ 230 (267)
T ss_pred HHHHHHHHHHHhc---CCeEEEEEcCHHHHHhhCC
Confidence 8888888888743 4688899998753 34444
No 393
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.74 E-value=3.6e-08 Score=99.06 Aligned_cols=148 Identities=16% Similarity=0.108 Sum_probs=89.6
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccc-cCceEEE-Ec-CCchhhhccHHHHHHHhh---ccc-------
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDR-RRKMMIA-CT-QPRRVAAMSVSRRVAEEM---DVT------- 143 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~-~~~~~i~-~t-~p~~~~~~~v~~~v~~~~---~~~------- 143 (688)
.+..|+.++|+|++||||||++..+.-... ...... ..+..+. .. ........++.+++.... +..
T Consensus 44 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~ 122 (224)
T cd03220 44 EVPRGERIGLIGRNGAGKSTLLRLLAGIYP-PDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEK 122 (224)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHH
Confidence 367999999999999999999875432111 000000 0000000 00 011111245555543211 000
Q ss_pred ---ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcE
Q 005605 144 ---IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLK 218 (688)
Q Consensus 144 ---~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~ 218 (688)
+...+|.. ...+..+..+|+|+.+++.+++.++.+++++|+|| ++.|......+.+.++.+.+. +..
T Consensus 123 ~~~~l~~~~l~------~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~--~~t 194 (224)
T cd03220 123 IDEIIEFSELG------DFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ--GKT 194 (224)
T ss_pred HHHHHHHcCCh------hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC--CCE
Confidence 00111110 11345667899999999999999999999999999 677777777888888887654 578
Q ss_pred EEEeccccc-HHHHHc
Q 005605 219 LVVMSATLE-AEKFQG 233 (688)
Q Consensus 219 vil~SAT~~-~~~~~~ 233 (688)
+|+.||..+ ...+++
T Consensus 195 iii~sH~~~~~~~~~d 210 (224)
T cd03220 195 VILVSHDPSSIKRLCD 210 (224)
T ss_pred EEEEeCCHHHHHHhCC
Confidence 999999875 344444
No 394
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.9e-08 Score=97.35 Aligned_cols=149 Identities=21% Similarity=0.322 Sum_probs=99.9
Q ss_pred HhcCCEEEEEeCCCCChhcchh-------------HHHhcCccCCC----ccccCceEEEEcCCchhhhccHHHHHHHhh
Q 005605 78 LKANQVIILVGETGSGKTTQIP-------------QFVLEGVDIET----PDRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~-------------~~ll~~~~~~~----~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (688)
+..|++.+|.|||||||||+.. .+++++.++.. ...+.++.+.++.|..+.-.++.+.+....
T Consensus 27 v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~ 106 (251)
T COG0396 27 VKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAM 106 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHH
Confidence 6789999999999999999876 45566665543 233457889999999988888877765433
Q ss_pred ccccc----------------ceeceeeeeccccccccccc-ccCHHHHHHHHhccccccCCcEEeecccCcChhhHHHH
Q 005605 141 DVTIG----------------EEVGYSIRFEDCSSARTVLK-YLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVL 203 (688)
Q Consensus 141 ~~~~~----------------~~vg~~~~~~~~~~~~~~i~-~lT~G~l~~~~~~~~ll~~~~~lIlDEaher~~~~d~l 203 (688)
+..-+ ..+++. . ...+..+. -.|+|...|..+...++.+|++.||||.| .-++.|.+
T Consensus 107 n~~~~~~~~~~~~~~~~~e~~~~l~~~----~-~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~D-SGLDIdal 180 (251)
T COG0396 107 NARRGARGILPEFIKELKEKAELLGLD----E-EFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPD-SGLDIDAL 180 (251)
T ss_pred HhhhccccccHHHHHHHHHHHHHcCCC----H-HHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCC-cCccHHHH
Confidence 22111 111211 0 01122222 36999999999988889999999999987 45677665
Q ss_pred HHHHHHHHhcC-CCcEEEEecccccHHHHHchh
Q 005605 204 FGLLKEVLKNR-PDLKLVVMSATLEAEKFQGYF 235 (688)
Q Consensus 204 l~~l~~i~~~~-~~~~vil~SAT~~~~~~~~~~ 235 (688)
..+-+-+...+ ++..+++++|.- .+.+|.
T Consensus 181 k~V~~~i~~lr~~~~~~liITHy~---rll~~i 210 (251)
T COG0396 181 KIVAEGINALREEGRGVLIITHYQ---RLLDYI 210 (251)
T ss_pred HHHHHHHHHHhcCCCeEEEEecHH---HHHhhc
Confidence 54444443322 378889999874 344444
No 395
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.74 E-value=1.5e-08 Score=103.75 Aligned_cols=151 Identities=18% Similarity=0.244 Sum_probs=96.7
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhc----------C------ccCCC-----ccccCceEEEEcCCchhhhccHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLE----------G------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~----------~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (688)
+..|+.++|+|++||||||++..+.=. + .+... ....+.+.++++.+.... .++.+++
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl 105 (251)
T PRK14249 27 FPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFP-KSIFDNV 105 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCc-CcHHHHH
Confidence 568999999999999999998743211 1 00100 011234566777665443 4676666
Q ss_pred HHhhc---cccc-----------ceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhH
Q 005605 137 AEEMD---VTIG-----------EEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (688)
Q Consensus 137 ~~~~~---~~~~-----------~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (688)
..... .... ..+|..... ....+..+..+|+|+.+++.++++++.+++++|+|| +++|....
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~ 183 (251)
T PRK14249 106 AFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV--KDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVST 183 (251)
T ss_pred hhHHHhcCCChhhHHHHHHHHHHHHhCCchhh--hhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 43211 0000 001110000 011345667899999999999999999999999999 77777788
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 201 DVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 201 d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
..+..+++.+. . +..+|++||.++ ...+++.
T Consensus 184 ~~l~~~l~~~~-~--~~tilivsh~~~~~~~~~d~ 215 (251)
T PRK14249 184 MRIEELMQELK-Q--NYTIAIVTHNMQQAARASDW 215 (251)
T ss_pred HHHHHHHHHHh-c--CCEEEEEeCCHHHHHhhCCE
Confidence 88888888873 2 578999999884 3445443
No 396
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.74 E-value=2.6e-08 Score=113.75 Aligned_cols=152 Identities=19% Similarity=0.216 Sum_probs=96.7
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHHhcCccCCC-c--cccCceEEEEcCCchhhhccHHHHHHHhhcc-----------
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIET-P--DRRRKMMIACTQPRRVAAMSVSRRVAEEMDV----------- 142 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~-~--~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~----------- 142 (688)
.+..|+.++|+|+|||||||++..+.-.-..... . .....+.++++.|......++.+++......
T Consensus 29 ~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~ 108 (556)
T PRK11819 29 SFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEI 108 (556)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHH
Confidence 3678999999999999999998854421110000 0 0123466777777655556777776432100
Q ss_pred --cccc--------------------eec-eee--------eecccccccccccccCHHHHHHHHhccccccCCcEEeec
Q 005605 143 --TIGE--------------------EVG-YSI--------RFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLD 191 (688)
Q Consensus 143 --~~~~--------------------~vg-~~~--------~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlD 191 (688)
.... .++ +.. ..-.....+..+..+|+|+.+++.+++.++.+++++|||
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLD 188 (556)
T PRK11819 109 YAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLD 188 (556)
T ss_pred HHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 0000 000 000 000001124567789999999999999999999999999
Q ss_pred c--cCcChhhHHHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHc
Q 005605 192 E--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 192 E--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~ 233 (688)
| +|+|......+.++++.+ ...+|+.||.++ ...+++
T Consensus 189 EPt~~LD~~~~~~l~~~L~~~-----~~tviiisHd~~~~~~~~d 228 (556)
T PRK11819 189 EPTNHLDAESVAWLEQFLHDY-----PGTVVAVTHDRYFLDNVAG 228 (556)
T ss_pred CCCCcCChHHHHHHHHHHHhC-----CCeEEEEeCCHHHHHhhcC
Confidence 9 788878887777777764 247899999984 344544
No 397
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.73 E-value=3.7e-08 Score=100.98 Aligned_cols=152 Identities=20% Similarity=0.318 Sum_probs=98.1
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhc----------C------ccCCC-----ccccCceEEEEcCCchhhhccHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLE----------G------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~----------~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (688)
+.+|+.++|+|+|||||||++..+.-. + .++.. ....+.+.++++.+......++.+++
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl 106 (252)
T PRK14256 27 FPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNV 106 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHH
Confidence 568999999999999999988744311 1 01110 01123456777776655557777777
Q ss_pred HHhhcc----c-------c---cceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhH
Q 005605 137 AEEMDV----T-------I---GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (688)
Q Consensus 137 ~~~~~~----~-------~---~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (688)
...... . + ...+|..... ....+..+..+|+|+.+++.++++++.+++++|+|| ...|....
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~ 184 (252)
T PRK14256 107 IAGYKLNGRVNRSEADEIVESSLKRVALWDEV--KDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPIST 184 (252)
T ss_pred HhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh--hHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 532110 0 0 0011110000 011234567799999999999999999999999999 66677777
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 201 DVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 201 d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
..+..+++++.+ +..+|+.||.++ ...+++.
T Consensus 185 ~~l~~~l~~~~~---~~tiiivsH~~~~~~~~~d~ 216 (252)
T PRK14256 185 LKIEELIEELKE---KYTIIIVTHNMQQAARVSDY 216 (252)
T ss_pred HHHHHHHHHHHh---CCcEEEEECCHHHHHhhCCE
Confidence 788888888753 358899999884 3455543
No 398
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.73 E-value=2.1e-08 Score=103.14 Aligned_cols=151 Identities=20% Similarity=0.257 Sum_probs=96.6
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH--h--------cC------ccCCC-----ccccCceEEEEcCCchhhhccHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV--L--------EG------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l--l--------~~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (688)
+..|+.++|+|+|||||||++..+. + .+ .++.. ....+.+.++++.+... ..++.+++
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl 109 (261)
T PRK14263 31 IRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNV 109 (261)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccc-cccHHHHH
Confidence 5689999999999999999887442 1 11 11110 01123456666666544 47777776
Q ss_pred HHhhcc------------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHH
Q 005605 137 AEEMDV------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (688)
Q Consensus 137 ~~~~~~------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ 202 (688)
...... .....+|..... ....+..+..+|+|+.+++.++++++.+++++|+|| +++|....+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~ 187 (261)
T PRK14263 110 AFGLRLNRYKGDLGDRVKHALQGAALWDEV--KDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRR 187 (261)
T ss_pred HHHHhhcCchHHHHHHHHHHHHHcCCchhh--hhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHH
Confidence 532110 011111210000 001234556799999999999999999999999999 6777777888
Q ss_pred HHHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 203 LFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 203 ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
+..+++++. . +..+|+.||.++ ...+++.
T Consensus 188 l~~~l~~~~-~--~~tii~isH~~~~i~~~~d~ 217 (261)
T PRK14263 188 VEELMVELK-K--DYTIALVTHNMQQAIRVADT 217 (261)
T ss_pred HHHHHHHHh-c--CCeEEEEeCCHHHHHHhCCE
Confidence 888888873 2 468889999885 4555543
No 399
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.73 E-value=1.9e-08 Score=104.28 Aligned_cols=153 Identities=25% Similarity=0.367 Sum_probs=105.2
Q ss_pred HHhcCCEEEEEeCCCCChhcchh----------HHHhcCccCCC------ccccCceEEEEcCCchh--hhccHHHHHHH
Q 005605 77 VLKANQVIILVGETGSGKTTQIP----------QFVLEGVDIET------PDRRRKMMIACTQPRRV--AAMSVSRRVAE 138 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~----------~~ll~~~~~~~------~~~~~~~~i~~t~p~~~--~~~~v~~~v~~ 138 (688)
.+..|+.++++|++||||||+-. .+.+++.++.. ...++.+.++++.|-.. .-+++.+-+.+
T Consensus 309 ~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~E 388 (534)
T COG4172 309 TLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEE 388 (534)
T ss_pred EecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhh
Confidence 36789999999999999999643 22333433322 11234567888888533 45677776665
Q ss_pred hhcc---------------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeeccc--CcChhhHH
Q 005605 139 EMDV---------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEA--HERTLATD 201 (688)
Q Consensus 139 ~~~~---------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEa--her~~~~d 201 (688)
.+.+ .....||... ...+..++..|+|+.+|+.+++++..+|++|+|||- -+|..-..
T Consensus 389 GL~vh~~~ls~~eR~~rv~~aL~EVGLDp-----~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQa 463 (534)
T COG4172 389 GLRVHEPKLSAAERDQRVIEALEEVGLDP-----ATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQA 463 (534)
T ss_pred hhhhcCCCCCHHHHHHHHHHHHHHcCCCh-----hHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHH
Confidence 4321 1122344321 223456778999999999999999999999999992 23334444
Q ss_pred HHHHHHHHHHhcCCCcEEEEecccccH-HHHHchh
Q 005605 202 VLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGYF 235 (688)
Q Consensus 202 ~ll~~l~~i~~~~~~~~vil~SAT~~~-~~~~~~~ 235 (688)
.++++++.+.+++ ++..+++||++.+ ..++++.
T Consensus 464 Qvv~LLr~LQ~k~-~LsYLFISHDL~VvrAl~~~v 497 (534)
T COG4172 464 QVLDLLRDLQQKH-GLSYLFISHDLAVVRALCHRV 497 (534)
T ss_pred HHHHHHHHHHHHh-CCeEEEEeccHHHHHHhhceE
Confidence 5889999998887 8999999999964 5566653
No 400
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.73 E-value=4e-08 Score=100.68 Aligned_cols=150 Identities=17% Similarity=0.269 Sum_probs=97.0
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHh----------cC------ccCCC-----ccccCceEEEEcCCchhhhccHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll----------~~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (688)
+.+|+.++|+|+|||||||++..+.- .+ .++.. ....+.+.++++++.... .++.+++
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl 106 (252)
T PRK14255 28 FNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENV 106 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCC-CcHHHHH
Confidence 56899999999999999999875531 01 01100 001234567777665554 5777766
Q ss_pred HHhhc---ccc-----------cceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhH
Q 005605 137 AEEMD---VTI-----------GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (688)
Q Consensus 137 ~~~~~---~~~-----------~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (688)
..... ... ...+|..... ....+..+..+|+|+.+++.++++++.+++++|+|| +++|....
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i--~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~ 184 (252)
T PRK14255 107 IYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV--KDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISS 184 (252)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHcCCccch--hhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 43211 000 0011110000 011345667899999999999999999999999999 77777888
Q ss_pred HHHHHHHHHHHhcCCCcEEEEecccccH-HHHHc
Q 005605 201 DVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (688)
Q Consensus 201 d~ll~~l~~i~~~~~~~~vil~SAT~~~-~~~~~ 233 (688)
..+..+++.+.+ +..+|++||.++. ..+++
T Consensus 185 ~~l~~~l~~~~~---~~tii~vsH~~~~~~~~~d 215 (252)
T PRK14255 185 TQIENMLLELRD---QYTIILVTHSMHQASRISD 215 (252)
T ss_pred HHHHHHHHHHHh---CCEEEEEECCHHHHHHhCC
Confidence 888888888743 3688999998853 34444
No 401
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.73 E-value=1.6e-08 Score=127.00 Aligned_cols=148 Identities=20% Similarity=0.295 Sum_probs=104.5
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc--cccCceEEEEcCCchhhhccHHHHHHHhh---c
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP--DRRRKMMIACTQPRRVAAMSVSRRVAEEM---D 141 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~--~~~~~~~i~~t~p~~~~~~~v~~~v~~~~---~ 141 (688)
+.+|+.+++.|+|||||||++..+. +++.++... ..++.++++++++.....+++.+.+.... +
T Consensus 953 I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg 1032 (2272)
T TIGR01257 953 FYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG 1032 (2272)
T ss_pred EcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC
Confidence 6789999999999999999987322 222222110 11235677888776666678888775321 1
Q ss_pred cc----------ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHH
Q 005605 142 VT----------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (688)
Q Consensus 142 ~~----------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~ 209 (688)
.. ....+|. ....+..+..+|+|+++++.++.+++.++++|+||| +++|......+.+++++
T Consensus 1033 ~~~~~~~~~v~~lL~~vgL------~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~ 1106 (2272)
T TIGR01257 1033 RSWEEAQLEMEAMLEDTGL------HHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLK 1106 (2272)
T ss_pred CCHHHHHHHHHHHHHHcCC------chhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 10 1111121 112356677899999999999999999999999999 78888888889999998
Q ss_pred HHhcCCCcEEEEeccccc-HHHHHch
Q 005605 210 VLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 210 i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
+. . +..+|+.||.++ ++.+++.
T Consensus 1107 l~-~--g~TIIltTHdmdea~~laDr 1129 (2272)
T TIGR01257 1107 YR-S--GRTIIMSTHHMDEADLLGDR 1129 (2272)
T ss_pred Hh-C--CCEEEEEECCHHHHHHhCCE
Confidence 73 2 678999999995 4556654
No 402
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.72 E-value=2.5e-08 Score=101.98 Aligned_cols=151 Identities=23% Similarity=0.289 Sum_probs=96.7
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhc----------C------ccCCC----ccccCceEEEEcCCchhhhccHHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLE----------G------VDIET----PDRRRKMMIACTQPRRVAAMSVSRRVA 137 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~----------~------~~~~~----~~~~~~~~i~~t~p~~~~~~~v~~~v~ 137 (688)
+..|+.++|+|+|||||||++..+.-. + .++.. ....+.+.++++++.... .++.+++.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~ 104 (249)
T PRK14253 26 IPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVA 104 (249)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCc-ccHHHHHH
Confidence 568999999999999999998754211 1 11100 011234567777766554 67777765
Q ss_pred Hhhcc-cc-------------cceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHH
Q 005605 138 EEMDV-TI-------------GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (688)
Q Consensus 138 ~~~~~-~~-------------~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d 201 (688)
..... .. ...+|..... ....+..+..+|+|+.+++.++++++.+++++|+|| +++|.....
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~ 182 (249)
T PRK14253 105 YGLRAQGIKDKKVLDEVVERSLRGAALWDEV--KDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATH 182 (249)
T ss_pred hHHHhcCCCchHHHHHHHHHHHHHcCCchhh--hHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHH
Confidence 32110 00 0001110000 011234566799999999999999999999999999 667777778
Q ss_pred HHHHHHHHHHhcCCCcEEEEecccccH-HHHHch
Q 005605 202 VLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (688)
Q Consensus 202 ~ll~~l~~i~~~~~~~~vil~SAT~~~-~~~~~~ 234 (688)
.+..+++++.+ +..+|+.||.++. ..+++.
T Consensus 183 ~l~~~l~~~~~---~~tii~~sh~~~~~~~~~d~ 213 (249)
T PRK14253 183 KIEELMEELKK---NYTIVIVTHSMQQARRISDR 213 (249)
T ss_pred HHHHHHHHHhc---CCeEEEEecCHHHHHHhCCE
Confidence 88888888743 3688999998753 445543
No 403
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.72 E-value=1.5e-08 Score=115.70 Aligned_cols=149 Identities=20% Similarity=0.235 Sum_probs=92.7
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhc-
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (688)
.+..|+.++|+|++||||||++.... +++.++.. ...++.+.+++++|.... .++.+++.....
T Consensus 340 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~~~ 418 (544)
T TIGR01842 340 RLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFP-GTVAENIARFGEN 418 (544)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCccccc-ccHHHHHhccCCC
Confidence 36799999999999999999887432 22211111 111234566777665544 477777752110
Q ss_pred c---cc---cceeceeeeeccc-----ccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHH
Q 005605 142 V---TI---GEEVGYSIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (688)
Q Consensus 142 ~---~~---~~~vg~~~~~~~~-----~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~ 208 (688)
. .+ ....|.....+.. .........+|+|+.+|+.++++++.+++++|+|| ++.|....+.+.+.+.
T Consensus 419 ~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~ 498 (544)
T TIGR01842 419 ADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIK 498 (544)
T ss_pred CCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHH
Confidence 0 00 0111110000000 11122345699999999999999999999999999 5666666777777776
Q ss_pred HHHhcCCCcEEEEecccccH
Q 005605 209 EVLKNRPDLKLVVMSATLEA 228 (688)
Q Consensus 209 ~i~~~~~~~~vil~SAT~~~ 228 (688)
.+.. .+..+|++||.++.
T Consensus 499 ~~~~--~~~tvi~ith~~~~ 516 (544)
T TIGR01842 499 ALKA--RGITVVVITHRPSL 516 (544)
T ss_pred HHhh--CCCEEEEEeCCHHH
Confidence 6532 25789999999853
No 404
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.71 E-value=3.6e-08 Score=101.91 Aligned_cols=151 Identities=17% Similarity=0.289 Sum_probs=97.1
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhc----------C------ccCCC-----ccccCceEEEEcCCchhhhccHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLE----------G------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~----------~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (688)
+..|+.++|+|+|||||||++..+.-. + .++.. ....+.+.++++++.... .++.+++
T Consensus 43 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni 121 (267)
T PRK14237 43 FEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENI 121 (267)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHH
Confidence 568999999999999999998743311 1 01100 001234667777665544 5777777
Q ss_pred HHhhccc---c-----------cceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhH
Q 005605 137 AEEMDVT---I-----------GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (688)
Q Consensus 137 ~~~~~~~---~-----------~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (688)
....... . ...+|..... ....+..+..+|+|+.+++.++++++.+++++|+|| +++|....
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i--~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~ 199 (267)
T PRK14237 122 TFALERAGVKDKKVLDEIVETSLKQAALWDQV--KDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPIST 199 (267)
T ss_pred HhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh--hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 5422100 0 0011110000 011345667899999999999999999999999999 67777777
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 201 DVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 201 d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
..+..+++++. . +..+|+.||.++ ...+++.
T Consensus 200 ~~l~~~l~~~~-~--~~tiii~tH~~~~~~~~~d~ 231 (267)
T PRK14237 200 MQLEETMFELK-K--NYTIIIVTHNMQQAARASDY 231 (267)
T ss_pred HHHHHHHHHHh-c--CCEEEEEecCHHHHHHhcCE
Confidence 77888888873 2 468999999875 3445543
No 405
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.71 E-value=6.4e-08 Score=99.20 Aligned_cols=151 Identities=19% Similarity=0.251 Sum_probs=98.2
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhc----------C------ccCCC-----ccccCceEEEEcCCchhhhccHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLE----------G------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~----------~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (688)
+.+|+.++|+|+|||||||++..+.-. + .++.. ....+.+.++++.+......++.+++
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl 106 (252)
T PRK14272 27 VQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNV 106 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHH
Confidence 578999999999999999998754311 1 01100 01122456777776655556787777
Q ss_pred HHhhcc-c--c----cc-------eeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhH
Q 005605 137 AEEMDV-T--I----GE-------EVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (688)
Q Consensus 137 ~~~~~~-~--~----~~-------~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (688)
...... . . .. .++..... ....+..+..+|+|+.+++.++++++.+++++|+|| ++.|....
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~ 184 (252)
T PRK14272 107 VAGLKLAGIRDRDHLMEVAERSLRGAALWDEV--KDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPAST 184 (252)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh--hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 532210 0 0 00 01100000 011245677899999999999999999999999999 67777777
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHc
Q 005605 201 DVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 201 d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~ 233 (688)
..+..+++++. . +..+|+.||..+ ...+++
T Consensus 185 ~~l~~~l~~~~-~--~~tiii~sH~~~~~~~~~d 215 (252)
T PRK14272 185 ARIEDLMTDLK-K--VTTIIIVTHNMHQAARVSD 215 (252)
T ss_pred HHHHHHHHHHh-c--CCeEEEEeCCHHHHHHhCC
Confidence 88888888874 2 478899999885 344544
No 406
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.71 E-value=2e-08 Score=113.08 Aligned_cols=73 Identities=21% Similarity=0.256 Sum_probs=62.0
Q ss_pred ccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 160 ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 160 ~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
.+..+..+|+|+.+++.+++.++.+++++|||| ++.|......+..+++.+.+. +..+|+.||.++ +..++++
T Consensus 385 ~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~--~~tvi~vsHd~~~~~~~~d~ 460 (491)
T PRK10982 385 HRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK--DKGIIIISSEMPELLGITDR 460 (491)
T ss_pred cccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHC--CCEEEEECCChHHHHhhCCE
Confidence 356778899999999999999999999999999 888888898899999887654 678999999985 4555544
No 407
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.70 E-value=3.2e-08 Score=93.67 Aligned_cols=119 Identities=24% Similarity=0.419 Sum_probs=77.9
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhcccccceeceeeeeccc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC 157 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~ 157 (688)
+.+|+.++|.|+|||||||++..+.- . ... ..+- +.... ........ ..+ ...++|...
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g--~-~~~---~~G~-i~~~~-~~~~~~~~-~~~--------~~~i~~~~q---- 80 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAG--L-LKP---TSGE-ILIDG-KDIAKLPL-EEL--------RRRIGYVPQ---- 80 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC--C-CCC---CccE-EEECC-EEcccCCH-HHH--------HhceEEEee----
Confidence 56899999999999999998876432 2 111 0111 11111 00000000 000 112333311
Q ss_pred ccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEecccccH
Q 005605 158 SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (688)
Q Consensus 158 ~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~~ 228 (688)
+|.|+.++..+++.++.+++++|+|| ++.|....+.+..+++.+... +.++++.||.++.
T Consensus 81 ---------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~--~~tii~~sh~~~~ 142 (157)
T cd00267 81 ---------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE--GRTVIIVTHDPEL 142 (157)
T ss_pred ---------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHH
Confidence 99999999999999999999999999 667767777788888776553 5789999998743
No 408
>PRK13409 putative ATPase RIL; Provisional
Probab=98.70 E-value=1.6e-08 Score=115.43 Aligned_cols=72 Identities=18% Similarity=0.188 Sum_probs=60.7
Q ss_pred ccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 160 ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 160 ~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
.+..+..+|+|+++++.++.+++.++++++||| +++|......+..+++.+.+ +..+|+.||.++ ...++++
T Consensus 206 ~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~---g~tvIivsHd~~~l~~~~D~ 280 (590)
T PRK13409 206 LDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE---GKYVLVVEHDLAVLDYLADN 280 (590)
T ss_pred hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHhCCE
Confidence 356777899999999999999999999999999 88888888889999988754 678999999985 3445543
No 409
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.70 E-value=9.6e-09 Score=94.72 Aligned_cols=114 Identities=24% Similarity=0.362 Sum_probs=70.3
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhccc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (688)
+..|+.++|+|++||||||++..+. +++.++.. ......+.++++.+......++.++........
T Consensus 8 i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~~~~~~~ 87 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENESDERIEE 87 (137)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHHHHHHHH
T ss_pred EcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4679999999999999999987322 22221211 112335566777766666666665532222212
Q ss_pred ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeeccc
Q 005605 144 IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEA 193 (688)
Q Consensus 144 ~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEa 193 (688)
+...++... ......+.....+|+|+.+++.++++++.+++++||||.
T Consensus 88 ~l~~l~~~~--~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEP 135 (137)
T PF00005_consen 88 VLKKLGLED--LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEP 135 (137)
T ss_dssp HHHHTTHGG--GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEEST
T ss_pred ccccccccc--ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 222222110 001112334478999999999999999999999999995
No 410
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.70 E-value=7.6e-09 Score=92.93 Aligned_cols=139 Identities=21% Similarity=0.329 Sum_probs=89.4
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHH--------------hcCccCCC-ccccCceEEEEcCCchhhhccHHHHHHHhhc
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFV--------------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l--------------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (688)
.|.+|+++-+.||+||||||++...+ +++.++.. +...+.++|.++.+......+|.+++.....
T Consensus 24 Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp 103 (213)
T COG4136 24 TIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALP 103 (213)
T ss_pred EecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEecC
Confidence 36789999999999999999876322 22221111 2234567889999988888888777643221
Q ss_pred ccc------------cceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecccC------cChhhHHHH
Q 005605 142 VTI------------GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAH------ERTLATDVL 203 (688)
Q Consensus 142 ~~~------------~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEah------er~~~~d~l 203 (688)
..+ ...+|.. ......+..+|+|+.-|+.+.+.++..++.+++||-- +|....+.+
T Consensus 104 ~~~KG~aRr~~a~aAL~~~gL~------g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wV 177 (213)
T COG4136 104 ATLKGNARRNAANAALERSGLD------GAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWV 177 (213)
T ss_pred cccccHHHHhhHHHHHHHhccc------hhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHH
Confidence 111 1122221 1123556779999999999999999999999999932 222223333
Q ss_pred HHHHHHHHhcCCCcEEEEecccc
Q 005605 204 FGLLKEVLKNRPDLKLVVMSATL 226 (688)
Q Consensus 204 l~~l~~i~~~~~~~~vil~SAT~ 226 (688)
+..++. -++.+++++|+.
T Consensus 178 Fs~~r~-----agiPtv~VTHD~ 195 (213)
T COG4136 178 FSEVRA-----AGIPTVQVTHDL 195 (213)
T ss_pred HHHHHh-----cCCCeEEEeccc
Confidence 322222 167888888886
No 411
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.70 E-value=4.7e-08 Score=103.76 Aligned_cols=151 Identities=17% Similarity=0.249 Sum_probs=97.2
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhc----------C------ccCCC-----ccccCceEEEEcCCchhhhccHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLE----------G------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~----------~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (688)
|..|+.++|+|+|||||||++..+.-. | .++.. ....+.+.++++.|... ..++.+++
T Consensus 105 I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~-~~ti~eNi 183 (329)
T PRK14257 105 IKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPF-EMSIFDNV 183 (329)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccC-CCcHHHHH
Confidence 678999999999999999988754311 1 11100 01123567788777654 46887777
Q ss_pred HHhhccc--------------ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhH
Q 005605 137 AEEMDVT--------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (688)
Q Consensus 137 ~~~~~~~--------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (688)
....... ....++..... ..........+|+|+.+++.++++++.+++++++|| ++.|....
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l--~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~ 261 (329)
T PRK14257 184 AYGPRNNGINDRKILEKIVEKSLKSAALWDEV--KDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIAT 261 (329)
T ss_pred HhHHHhcCCChHHHHHHHHHHHHHHcCCcchh--hhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHH
Confidence 6321100 00111110000 011245566799999999999999999999999999 66666666
Q ss_pred HHHHHHHHHHHhcCCCcEEEEecccccH-HHHHch
Q 005605 201 DVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (688)
Q Consensus 201 d~ll~~l~~i~~~~~~~~vil~SAT~~~-~~~~~~ 234 (688)
..+...++.+.+ +..+|++||.++. ..+++.
T Consensus 262 ~~i~~~i~~l~~---~~Tii~iTH~l~~i~~~~Dr 293 (329)
T PRK14257 262 AKIEELILELKK---KYSIIIVTHSMAQAQRISDE 293 (329)
T ss_pred HHHHHHHHHHhc---CCEEEEEeCCHHHHHHhCCE
Confidence 667777776643 4689999999853 445544
No 412
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.70 E-value=4.9e-08 Score=99.99 Aligned_cols=151 Identities=20% Similarity=0.300 Sum_probs=97.4
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHh----------cC------ccCCCc-----cccCceEEEEcCCchhhhccHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIETP-----DRRRKMMIACTQPRRVAAMSVSRRV 136 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll----------~~------~~~~~~-----~~~~~~~i~~t~p~~~~~~~v~~~v 136 (688)
+.+|+.++|+|+|||||||++..+.= .+ .++... ...+.+.++++.+.... .++.+++
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl 105 (251)
T PRK14270 27 IYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNV 105 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCC-CcHHHHH
Confidence 56899999999999999999875431 11 111000 01234667777765554 6777776
Q ss_pred HHhh---cc-----------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhH
Q 005605 137 AEEM---DV-----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (688)
Q Consensus 137 ~~~~---~~-----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (688)
.... +. .....+|..... ....+..+..+|+|+.+++.+++.++.+++++|+|| +++|....
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~ 183 (251)
T PRK14270 106 AYGPRIHGIKDKKELDKIVEWALKKAALWDEV--KDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPIST 183 (251)
T ss_pred HhHHHhcCCCcHHHHHHHHHHHHHHcCCchhh--hhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 5321 10 000111100000 011345667899999999999999999999999999 67777777
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 201 DVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 201 d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
..+..+++.+.+ +..+|++||.++ ...+++.
T Consensus 184 ~~l~~~L~~~~~---~~tiiivsH~~~~~~~~~d~ 215 (251)
T PRK14270 184 LKIEDLMVELKK---EYTIVIVTHNMQQASRVSDY 215 (251)
T ss_pred HHHHHHHHHHHh---CCeEEEEEcCHHHHHHhcCE
Confidence 778888888754 367899999885 3455543
No 413
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.70 E-value=1.4e-08 Score=117.22 Aligned_cols=148 Identities=21% Similarity=0.256 Sum_probs=90.0
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH----------hcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhc---
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD--- 141 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~--- 141 (688)
+.+|+.++|+|++||||||++.... +++.++.. ...++.+.+++++|... .-++.+++.-...
T Consensus 373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF-~~TI~eNI~~g~~~~~ 451 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWVGQNPQLP-HGTLRDNVLLGNPDAS 451 (588)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhheEEecCCCcCC-CcCHHHHhhcCCCCCC
Confidence 5799999999999999999887432 12211111 11123456666666543 4577777753211
Q ss_pred ----ccccceeceeeeecccc-cccccc----cccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHH
Q 005605 142 ----VTIGEEVGYSIRFEDCS-SARTVL----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (688)
Q Consensus 142 ----~~~~~~vg~~~~~~~~~-~~~~~i----~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i 210 (688)
......+|......... ..++.+ ..+|+|+.+|+.++++++.+++++|||| ++.|......+.+.+.++
T Consensus 452 ~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~ 531 (588)
T PRK11174 452 DEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAA 531 (588)
T ss_pred HHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 00111111100000000 011111 3499999999999999999999999999 566666666666655554
Q ss_pred HhcCCCcEEEEecccccHH
Q 005605 211 LKNRPDLKLVVMSATLEAE 229 (688)
Q Consensus 211 ~~~~~~~~vil~SAT~~~~ 229 (688)
.++..+|++||-++.-
T Consensus 532 ---~~~~TvIiItHrl~~i 547 (588)
T PRK11174 532 ---SRRQTTLMVTHQLEDL 547 (588)
T ss_pred ---hCCCEEEEEecChHHH
Confidence 3467899999998543
No 414
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.70 E-value=4.1e-08 Score=111.65 Aligned_cols=146 Identities=16% Similarity=0.170 Sum_probs=91.7
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhc-------------
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD------------- 141 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~------------- 141 (688)
+..|+.++|+|+|||||||++..+.=....... ......+.++++.+......++.+++.....
T Consensus 24 i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 103 (530)
T PRK15064 24 FGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIY 103 (530)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHh
Confidence 678999999999999999998865311110000 0011234566665544444555555432100
Q ss_pred -c-------------------------------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEe
Q 005605 142 -V-------------------------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIV 189 (688)
Q Consensus 142 -~-------------------------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lI 189 (688)
. .+...+|.. . ...+..+..+|+|+.+++.++++++.++++++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~-~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLl 178 (530)
T PRK15064 104 ALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIP----E-EQHYGLMSEVAPGWKLRVLLAQALFSNPDILL 178 (530)
T ss_pred cccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCC----h-hHhcCchhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 0 000011110 0 00123567899999999999999999999999
Q ss_pred ecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHc
Q 005605 190 LDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 190 lDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~ 233 (688)
||| +|+|......+.++++. . +..+|+.||.++ ...+++
T Consensus 179 LDEPt~~LD~~~~~~l~~~l~~----~-~~tiiivsHd~~~~~~~~d 220 (530)
T PRK15064 179 LDEPTNNLDINTIRWLEDVLNE----R-NSTMIIISHDRHFLNSVCT 220 (530)
T ss_pred EcCCCcccCHHHHHHHHHHHHh----C-CCeEEEEeCCHHHHHhhcc
Confidence 999 78877777777777653 2 578999999985 345554
No 415
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.69 E-value=3.6e-08 Score=112.64 Aligned_cols=152 Identities=18% Similarity=0.202 Sum_probs=96.0
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHHhcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhc------------
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD------------ 141 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~------------ 141 (688)
.+.+|+.++|+|+|||||||++..+.-....... ......+.++++.|......++.+++.....
T Consensus 27 ~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~ 106 (552)
T TIGR03719 27 SFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEI 106 (552)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHH
Confidence 3678999999999999999998865411110000 0012346677777755555677666643110
Q ss_pred -----cccc----------------ceec-ee--------eeecccccccccccccCHHHHHHHHhccccccCCcEEeec
Q 005605 142 -----VTIG----------------EEVG-YS--------IRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLD 191 (688)
Q Consensus 142 -----~~~~----------------~~vg-~~--------~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlD 191 (688)
..-. ..+| +. ...-.....+..+..+|+|+.+|+.+++.++.+++++|||
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLD 186 (552)
T TIGR03719 107 SAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLD 186 (552)
T ss_pred HHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 0000 0001 00 0000001124567789999999999999999999999999
Q ss_pred c--cCcChhhHHHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHc
Q 005605 192 E--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 192 E--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~ 233 (688)
| +|+|......+.++++.+ +..+|+.||.++ ...+++
T Consensus 187 EPt~~LD~~~~~~l~~~L~~~-----~~tvIiisHd~~~~~~~~d 226 (552)
T TIGR03719 187 EPTNHLDAESVAWLEQHLQEY-----PGTVVAVTHDRYFLDNVAG 226 (552)
T ss_pred CCCCCCChHHHHHHHHHHHhC-----CCeEEEEeCCHHHHHhhcC
Confidence 9 788888888777777654 247899999884 344443
No 416
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.69 E-value=5.5e-08 Score=107.03 Aligned_cols=145 Identities=15% Similarity=0.166 Sum_probs=91.0
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccc---cCc-eEEEEcCCchhhhccHHHHHHHhh---cc--------
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDR---RRK-MMIACTQPRRVAAMSVSRRVAEEM---DV-------- 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~---~~~-~~i~~t~p~~~~~~~v~~~v~~~~---~~-------- 142 (688)
+..|+.++|+|++||||||++..+. +. .....+ ..+ ...+...+......++.+++.... +.
T Consensus 47 I~~GEivgIiGpNGSGKSTLLkiLa--GL-l~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~ 123 (549)
T PRK13545 47 VPEGEIVGIIGLNGSGKSTLSNLIA--GV-TMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEI 123 (549)
T ss_pred EeCCCEEEEEcCCCCCHHHHHHHHh--CC-CCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHH
Confidence 5689999999999999999987543 22 111000 000 001111111222345555553211 10
Q ss_pred --cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcE
Q 005605 143 --TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLK 218 (688)
Q Consensus 143 --~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~ 218 (688)
.+...+|.. ...+..+..+|+|+.+|+.++++++.+++++|||| +++|....+.++.+++.+.+. +..
T Consensus 124 i~elLe~lgL~------~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~--G~T 195 (549)
T PRK13545 124 IPEIIEFADIG------KFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQ--GKT 195 (549)
T ss_pred HHHHHHHcCCh------hHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhC--CCE
Confidence 001111111 11345677899999999999999999999999999 778888888888888887533 678
Q ss_pred EEEeccccc-HHHHHc
Q 005605 219 LVVMSATLE-AEKFQG 233 (688)
Q Consensus 219 vil~SAT~~-~~~~~~ 233 (688)
+|+.||.++ ...+++
T Consensus 196 IIIVSHdl~~i~~l~D 211 (549)
T PRK13545 196 IFFISHSLSQVKSFCT 211 (549)
T ss_pred EEEEECCHHHHHHhCC
Confidence 999999984 344554
No 417
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.69 E-value=5.9e-08 Score=100.56 Aligned_cols=153 Identities=21% Similarity=0.309 Sum_probs=96.6
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHh----------cC------ccCCC-----ccccCceEEEEcCCchhhhccHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll----------~~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (688)
+..|+.++|+|+|||||||++..+.= .+ .++.. ....+.+.++++.+.... .++.+++
T Consensus 48 i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl 126 (272)
T PRK14236 48 IPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFP-KSIYENV 126 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCc-ccHHHHH
Confidence 56899999999999999999875421 11 11110 011234556666655444 3777776
Q ss_pred HHhhccc---cc----ceeceeeeeccc-----ccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHH
Q 005605 137 AEEMDVT---IG----EEVGYSIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (688)
Q Consensus 137 ~~~~~~~---~~----~~vg~~~~~~~~-----~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ 202 (688)
....... .. ..+......-.. ...+..+..+|+|+.+++.++++++.+++++|+|| +++|....+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~ 206 (272)
T PRK14236 127 VYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLK 206 (272)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHH
Confidence 4321100 00 001000000000 11244567799999999999999999999999999 6777777888
Q ss_pred HHHHHHHHHhcCCCcEEEEecccccH-HHHHch
Q 005605 203 LFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (688)
Q Consensus 203 ll~~l~~i~~~~~~~~vil~SAT~~~-~~~~~~ 234 (688)
+.++++++.+ +..+|+.||.++. ..+++.
T Consensus 207 l~~~L~~~~~---~~tiiivtH~~~~~~~~~d~ 236 (272)
T PRK14236 207 IEELITELKS---KYTIVIVTHNMQQAARVSDY 236 (272)
T ss_pred HHHHHHHHHh---CCeEEEEeCCHHHHHhhCCE
Confidence 8888888753 4688999999853 455543
No 418
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.69 E-value=3.2e-08 Score=101.30 Aligned_cols=150 Identities=20% Similarity=0.298 Sum_probs=95.3
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHh----------cCc------cCCCc-----cccCceEEEEcCCchhhhccHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVL----------EGV------DIETP-----DRRRKMMIACTQPRRVAAMSVSRRV 136 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll----------~~~------~~~~~-----~~~~~~~i~~t~p~~~~~~~v~~~v 136 (688)
+..|+.++|+|+|||||||++..+.- .+. ++... ...+.+.++++.+.... .++.+++
T Consensus 28 i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~ni 106 (251)
T PRK14244 28 IYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFP-KSIYDNV 106 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccccc-CCHHHHH
Confidence 56899999999999999999875431 110 00000 01234567777765444 3666666
Q ss_pred HHhh---cc------------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhh
Q 005605 137 AEEM---DV------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLA 199 (688)
Q Consensus 137 ~~~~---~~------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~ 199 (688)
.... +. .....+|..... ....+..+..+|+|+.+++.++++++.+++++|+|| +++|...
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~ 184 (251)
T PRK14244 107 AYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL--GDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVA 184 (251)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh--hhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 4321 00 001111110000 001234566799999999999999999999999999 6777777
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHc
Q 005605 200 TDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 200 ~d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~ 233 (688)
...+..+++.+. . +..+|+.||.++ ...+++
T Consensus 185 ~~~l~~~l~~~~-~--~~tiiiisH~~~~~~~~~d 216 (251)
T PRK14244 185 TNVIENLIQELK-K--NFTIIVVTHSMKQAKKVSD 216 (251)
T ss_pred HHHHHHHHHHHh-c--CCeEEEEeCCHHHHHhhcC
Confidence 778888888873 2 578999999875 344444
No 419
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.68 E-value=7.3e-08 Score=94.67 Aligned_cols=137 Identities=20% Similarity=0.238 Sum_probs=82.7
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH--hc------------------CccCCCccccCceEEEEcCCchhhhccHHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV--LE------------------GVDIETPDRRRKMMIACTQPRRVAAMSVSRRVA 137 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l--l~------------------~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~ 137 (688)
+..| .++|+|||||||||++..+. +. +.+.......+.+.++++.|.........+++.
T Consensus 20 ~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~~~~~~~ 98 (197)
T cd03278 20 FPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSIISQGDVS 98 (197)
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEEehhhHH
Confidence 4557 88999999999999886322 11 000000011234556777665431100011111
Q ss_pred HhhcccccceeceeeeecccccccccccccCHHHHHHHHhccccc----cCCcEEeecc--cCcChhhHHHHHHHHHHHH
Q 005605 138 EEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLL----ERYKVIVLDE--AHERTLATDVLFGLLKEVL 211 (688)
Q Consensus 138 ~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll----~~~~~lIlDE--aher~~~~d~ll~~l~~i~ 211 (688)
+.... ....+..+..+|+|+.+++.++..++ ..++++++|| ++.+......+..+++++.
T Consensus 99 ~~l~~--------------~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~ 164 (197)
T cd03278 99 EIIEA--------------PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFS 164 (197)
T ss_pred HHHhC--------------CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhc
Confidence 11110 01134556779999999999998864 5679999999 5566666777777777763
Q ss_pred hcCCCcEEEEecccccHHHHH
Q 005605 212 KNRPDLKLVVMSATLEAEKFQ 232 (688)
Q Consensus 212 ~~~~~~~vil~SAT~~~~~~~ 232 (688)
+ +.++|+.||.++...++
T Consensus 165 ~---~~tiIiitH~~~~~~~~ 182 (197)
T cd03278 165 K---ETQFIVITHRKGTMEAA 182 (197)
T ss_pred c---CCEEEEEECCHHHHhhc
Confidence 3 47899999998643333
No 420
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.68 E-value=4e-08 Score=101.94 Aligned_cols=151 Identities=22% Similarity=0.253 Sum_probs=96.2
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhc----------C------ccCCCc----cccCceEEEEcCCchhhhccHHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLE----------G------VDIETP----DRRRKMMIACTQPRRVAAMSVSRRVA 137 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~----------~------~~~~~~----~~~~~~~i~~t~p~~~~~~~v~~~v~ 137 (688)
+..|+.++|+|+|||||||++..+.=. + .++... .....+.++++++.... .++.+++.
T Consensus 44 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~ 122 (276)
T PRK14271 44 FPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVL 122 (276)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC-ccHHHHHH
Confidence 568999999999999999998754311 1 001000 01234556776665444 67777765
Q ss_pred Hhhcc----cc----------cceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHH
Q 005605 138 EEMDV----TI----------GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (688)
Q Consensus 138 ~~~~~----~~----------~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d 201 (688)
..... .. ...+|..... ....+..+..+|+|+.+++.++++++.+++++|+|| ++.+.....
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~ 200 (276)
T PRK14271 123 AGVRAHKLVPRKEFRGVAQARLTEVGLWDAV--KDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTE 200 (276)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHcCCCchh--hhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 32110 00 0011110000 001234567799999999999999999999999999 667777777
Q ss_pred HHHHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 202 VLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 202 ~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
.++.+++++.+ +..+|+.||.++ ...+++.
T Consensus 201 ~l~~~L~~~~~---~~tiiivsH~~~~~~~~~dr 231 (276)
T PRK14271 201 KIEEFIRSLAD---RLTVIIVTHNLAQAARISDR 231 (276)
T ss_pred HHHHHHHHHhc---CCEEEEEeCCHHHHHHhCCE
Confidence 78888887743 368999999885 3445543
No 421
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=98.68 E-value=4e-08 Score=114.06 Aligned_cols=148 Identities=17% Similarity=0.297 Sum_probs=101.6
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCcc-------ccCceEEEEcCCchhhhccHHHHHHHh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD-------RRRKMMIACTQPRRVAAMSVSRRVAEE 139 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~-------~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (688)
+.+|+.+++.|++||||||++..+. +++.++.... ..+.+.++++.+......++.+++...
T Consensus 31 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~ 110 (648)
T PRK10535 31 IYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVP 110 (648)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHH
Confidence 5799999999999999999987433 2222221100 023567788777655556777766432
Q ss_pred h---cc----------cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHH
Q 005605 140 M---DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (688)
Q Consensus 140 ~---~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll 204 (688)
. +. .....+|.. ...+..+..+|+|+.+++.++++++.+++++|+|| .++|....+.+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~lgl~------~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~ 184 (648)
T PRK10535 111 AVYAGLERKQRLLRAQELLQRLGLE------DRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVM 184 (648)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCCh------hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHH
Confidence 1 10 001111211 12345677899999999999999999999999999 677778888888
Q ss_pred HHHHHHHhcCCCcEEEEecccccHHHHHc
Q 005605 205 GLLKEVLKNRPDLKLVVMSATLEAEKFQG 233 (688)
Q Consensus 205 ~~l~~i~~~~~~~~vil~SAT~~~~~~~~ 233 (688)
.+++++.+. +..+++.||..+....++
T Consensus 185 ~ll~~l~~~--g~tilivsH~~~~~~~~d 211 (648)
T PRK10535 185 AILHQLRDR--GHTVIIVTHDPQVAAQAE 211 (648)
T ss_pred HHHHHHHhc--CCEEEEECCCHHHHHhCC
Confidence 888887543 789999999986544443
No 422
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.68 E-value=2.2e-08 Score=114.87 Aligned_cols=148 Identities=20% Similarity=0.296 Sum_probs=92.7
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhc-
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (688)
.+.+|+.++|+|++||||||++.... +++.++.. ...++.+.+++++|... .-++.+++.-...
T Consensus 362 ~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~ti~~Ni~~~~~~ 440 (574)
T PRK11160 362 QIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLF-SATLRDNLLLAAPN 440 (574)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhh-cccHHHHhhcCCCc
Confidence 46799999999999999999887432 22222211 11123456677666544 4577777753211
Q ss_pred ------ccccceeceeeeecccccccc----cccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHH
Q 005605 142 ------VTIGEEVGYSIRFEDCSSART----VLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (688)
Q Consensus 142 ------~~~~~~vg~~~~~~~~~~~~~----~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~ 209 (688)
......+|.....+.-...++ .-..+|+|+.+|+.++++++.+++++|+|| ++.|......+.+.+..
T Consensus 441 ~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~ 520 (574)
T PRK11160 441 ASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAE 520 (574)
T ss_pred cCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 011112221110011000122 234599999999999999999999999999 66666666666666666
Q ss_pred HHhcCCCcEEEEecccccH
Q 005605 210 VLKNRPDLKLVVMSATLEA 228 (688)
Q Consensus 210 i~~~~~~~~vil~SAT~~~ 228 (688)
+ .++..+|+.||-++.
T Consensus 521 ~---~~~~tviiitHr~~~ 536 (574)
T PRK11160 521 H---AQNKTVLMITHRLTG 536 (574)
T ss_pred H---cCCCEEEEEecChhH
Confidence 5 236789999998754
No 423
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.68 E-value=3e-08 Score=113.83 Aligned_cols=152 Identities=22% Similarity=0.310 Sum_probs=91.4
Q ss_pred HhcCCEEEEEeCCCCChhcchhH-----------HHhcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhc--
Q 005605 78 LKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD-- 141 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~-----------~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-- 141 (688)
+..|+.++++|+|||||||++.. +++++.++.. ...++.+.++++.+-... -++.+++.-...
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~~a 430 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRPDA 430 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCCCC
Confidence 78999999999999999998763 2234433332 122345666666665444 677777743221
Q ss_pred --ccc---cceeceeeeecccc-cccccc----cccCHHHHHHHHhccccccCCcEEeeccc--CcChhhHHHHHHHHHH
Q 005605 142 --VTI---GEEVGYSIRFEDCS-SARTVL----KYLTDGMLLREAMTDPLLERYKVIVLDEA--HERTLATDVLFGLLKE 209 (688)
Q Consensus 142 --~~~---~~~vg~~~~~~~~~-~~~~~i----~~lT~G~l~~~~~~~~ll~~~~~lIlDEa--her~~~~d~ll~~l~~ 209 (688)
..+ ...++......... ..++.+ .-+|+|+.||+.++++++.+++++||||| +.|......+.+.+..
T Consensus 431 t~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~ 510 (567)
T COG1132 431 TDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKK 510 (567)
T ss_pred CHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHH
Confidence 011 11111000000000 012222 35899999999999999999999999994 4555555555665554
Q ss_pred HHhcCCCcEEEEecccccHHHHHc
Q 005605 210 VLKNRPDLKLVVMSATLEAEKFQG 233 (688)
Q Consensus 210 i~~~~~~~~vil~SAT~~~~~~~~ 233 (688)
+. .++++++.+|-++.-..++
T Consensus 511 l~---~~rT~iiIaHRlsti~~aD 531 (567)
T COG1132 511 LL---KGRTTLIIAHRLSTIKNAD 531 (567)
T ss_pred Hh---cCCEEEEEeccHhHHHhCC
Confidence 43 2458888999885443343
No 424
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.68 E-value=2e-08 Score=114.30 Aligned_cols=145 Identities=23% Similarity=0.303 Sum_probs=86.8
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC--ccccCceEEEEcCCchhhhccHHHHHHHhhc--
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD-- 141 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-- 141 (688)
.+.+|+.++|+|++||||||++.... +++.++.. ...++.+.+++++|... .-++.+++.-...
T Consensus 357 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF-~~TI~eNI~~g~~~~ 435 (529)
T TIGR02868 357 DLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLF-DTTVRDNLRLGRPDA 435 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccc-cccHHHHHhccCCCC
Confidence 36799999999999999999987543 22211111 01123456777766544 4477777753211
Q ss_pred -----ccccceeceeeeeccc-ccccccc----cccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHH
Q 005605 142 -----VTIGEEVGYSIRFEDC-SSARTVL----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (688)
Q Consensus 142 -----~~~~~~vg~~~~~~~~-~~~~~~i----~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~ 209 (688)
......+|........ ...++.+ .-+|+|+.+|+.++++++.+++++|||| ++.|......+.+.+..
T Consensus 436 ~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~ 515 (529)
T TIGR02868 436 TDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLA 515 (529)
T ss_pred CHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 0111111211000000 0012222 3489999999999999999999999999 55555555555555443
Q ss_pred HHhcCCCcEEEEeccc
Q 005605 210 VLKNRPDLKLVVMSAT 225 (688)
Q Consensus 210 i~~~~~~~~vil~SAT 225 (688)
..++..+|++||.
T Consensus 516 ---~~~~~TvIiItHr 528 (529)
T TIGR02868 516 ---ALSGKTVVVITHH 528 (529)
T ss_pred ---hcCCCEEEEEecC
Confidence 3457789999885
No 425
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.67 E-value=4.1e-08 Score=101.02 Aligned_cols=151 Identities=19% Similarity=0.256 Sum_probs=96.5
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHh----------cCc------cCCC-----ccccCceEEEEcCCchhhhccHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVL----------EGV------DIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll----------~~~------~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (688)
+..|+.++|+|+|||||||++..+.- .+. ++.. ....+.+.++++.+.... .++.+++
T Consensus 35 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl 113 (259)
T PRK14274 35 IPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFP-QSIFDNV 113 (259)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcccc-cCHHHHH
Confidence 56899999999999999999875431 110 0100 001234566777665444 3777766
Q ss_pred HHhhccc--------------ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhH
Q 005605 137 AEEMDVT--------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (688)
Q Consensus 137 ~~~~~~~--------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (688)
....... +...+|..... ....+..+..+|+|+++++.+++.++.+++++++|| +++|....
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~ 191 (259)
T PRK14274 114 AYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV--KDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVST 191 (259)
T ss_pred HhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh--hhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 4321100 00011110000 011345667799999999999999999999999999 67777777
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 201 DVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 201 d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
..+..+++.+.+ +..+|++||.++ ...+++.
T Consensus 192 ~~l~~~l~~~~~---~~tiiivtH~~~~~~~~~d~ 223 (259)
T PRK14274 192 RKIEELILKLKE---KYTIVIVTHNMQQAARVSDQ 223 (259)
T ss_pred HHHHHHHHHHhc---CCEEEEEEcCHHHHHHhCCE
Confidence 788888888742 468999999885 3455543
No 426
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.67 E-value=5.8e-08 Score=102.26 Aligned_cols=151 Identities=18% Similarity=0.234 Sum_probs=96.0
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhc----------C------ccCCCc-----cccCceEEEEcCCchhhhccHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLE----------G------VDIETP-----DRRRKMMIACTQPRRVAAMSVSRRV 136 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~----------~------~~~~~~-----~~~~~~~i~~t~p~~~~~~~v~~~v 136 (688)
+..|+.++|+|+|||||||++..+.-. + .++... ...+.+.++++++.... .++.+++
T Consensus 68 i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl 146 (305)
T PRK14264 68 IPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENI 146 (305)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCcccc-ccHHHHH
Confidence 578999999999999999998754311 1 001000 01124556676665443 4777766
Q ss_pred HHhhccc--------------------------ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEee
Q 005605 137 AEEMDVT--------------------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVL 190 (688)
Q Consensus 137 ~~~~~~~--------------------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIl 190 (688)
....... +...+|..... ....+..+..+|+|+.+++.++++++.+++++|+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLL 224 (305)
T PRK14264 147 SYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV--NDRLDDNALGLSGGQQQRLCIARCLAVDPEVILM 224 (305)
T ss_pred HhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh--hHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 5321100 00000000000 0112345667999999999999999999999999
Q ss_pred cc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEecccccH-HHHHch
Q 005605 191 DE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (688)
Q Consensus 191 DE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~~-~~~~~~ 234 (688)
|| ++++......+..+++.+.+ +..+|+.||.++. ..+++.
T Consensus 225 DEPtsgLD~~~~~~l~~~L~~~~~---~~tiiivtH~~~~i~~~~d~ 268 (305)
T PRK14264 225 DEPASALDPIATSKIEDLIEELAE---EYTVVVVTHNMQQAARISDQ 268 (305)
T ss_pred eCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEEcCHHHHHHhcCE
Confidence 99 77777778888888888754 3578999998854 555543
No 427
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.67 E-value=2.3e-08 Score=115.45 Aligned_cols=150 Identities=22% Similarity=0.209 Sum_probs=92.9
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHH-----------HhcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhc-
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~-----------ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (688)
.+..|+.++|+|++||||||++... .+++.++.. ....+.+.+++++|.... -++.+++.-...
T Consensus 363 ~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~-~Ti~~NI~~~~~~ 441 (592)
T PRK10790 363 SVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLA-DTFLANVTLGRDI 441 (592)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCcccc-chHHHHHHhCCCC
Confidence 3679999999999999999988743 233322221 112345667777776554 367777643211
Q ss_pred -----ccccceeceeeeecccc-ccccc----ccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHH
Q 005605 142 -----VTIGEEVGYSIRFEDCS-SARTV----LKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (688)
Q Consensus 142 -----~~~~~~vg~~~~~~~~~-~~~~~----i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~ 209 (688)
......+|......... ..++. -.-+|+|+.+|+.++++++.+++++|+|| ++.|......+.+.++.
T Consensus 442 ~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~ 521 (592)
T PRK10790 442 SEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAA 521 (592)
T ss_pred CHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 11112222111000000 01111 13489999999999999999999999999 56666666666666655
Q ss_pred HHhcCCCcEEEEecccccHHH
Q 005605 210 VLKNRPDLKLVVMSATLEAEK 230 (688)
Q Consensus 210 i~~~~~~~~vil~SAT~~~~~ 230 (688)
+. ++..+|++||-+..-.
T Consensus 522 ~~---~~~tvIivtHr~~~l~ 539 (592)
T PRK10790 522 VR---EHTTLVVIAHRLSTIV 539 (592)
T ss_pred Hh---CCCEEEEEecchHHHH
Confidence 42 3678999999985433
No 428
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.67 E-value=5.5e-08 Score=96.92 Aligned_cols=153 Identities=12% Similarity=0.044 Sum_probs=85.7
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccc--cCceEE-EEcCCchhhhccHHHHHHHhhc---ccccceecee
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDR--RRKMMI-ACTQPRRVAAMSVSRRVAEEMD---VTIGEEVGYS 151 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~--~~~~~i-~~t~p~~~~~~~v~~~v~~~~~---~~~~~~vg~~ 151 (688)
+.+|+.++|+|||||||||++..+.-... ...... ..+..+ +...+.....+++.+++..... ..........
T Consensus 10 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~ 88 (213)
T PRK15177 10 MGYHEHIGILAAPGSGKTTLTRLLCGLDA-PDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDGDEFSHFC 88 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcc-CCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCHHHHHHHH
Confidence 56899999999999999999875432111 111000 000001 1112223334566666643211 1000000000
Q ss_pred eeeccc-ccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEeccccc-
Q 005605 152 IRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE- 227 (688)
Q Consensus 152 ~~~~~~-~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~- 227 (688)
...... ...+..+..+|+|+.+++.++++++.+++++++|| +..+......+...+.+..+ +..+|+.||.+.
T Consensus 89 ~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~---~~~ii~vsH~~~~ 165 (213)
T PRK15177 89 YQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ---QKGLIVLTHNPRL 165 (213)
T ss_pred HHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh---CCcEEEEECCHHH
Confidence 000000 11345677899999999999999999999999999 55555555556665544332 235888999885
Q ss_pred HHHHHch
Q 005605 228 AEKFQGY 234 (688)
Q Consensus 228 ~~~~~~~ 234 (688)
...+++.
T Consensus 166 ~~~~~d~ 172 (213)
T PRK15177 166 IKEHCHA 172 (213)
T ss_pred HHHhcCe
Confidence 3445543
No 429
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.67 E-value=3.1e-08 Score=101.72 Aligned_cols=152 Identities=20% Similarity=0.335 Sum_probs=97.2
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHh-----------cC------ccCCC---ccccCceEEEEcCCchhhhccHHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVL-----------EG------VDIET---PDRRRKMMIACTQPRRVAAMSVSRRVA 137 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll-----------~~------~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~ 137 (688)
+..|+.++|.|+|||||||++..+.= ++ .+... ......+.++++++......++.+++.
T Consensus 33 i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~ 112 (257)
T PRK14246 33 IPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIA 112 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHH
Confidence 56899999999999999999874331 11 11100 011234566777766555567777765
Q ss_pred Hhhc---cc----c-------cceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHH
Q 005605 138 EEMD---VT----I-------GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (688)
Q Consensus 138 ~~~~---~~----~-------~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d 201 (688)
.... .. . ...+|..... ....+..+..+|+|+.++..++++++.+++++++|| .++|....+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~ 190 (257)
T PRK14246 113 YPLKSHGIKEKREIKKIVEECLRKVGLWKEV--YDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQ 190 (257)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCccc--hhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHH
Confidence 3211 00 0 0011110000 011234567799999999999999999999999999 667777777
Q ss_pred HHHHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 202 VLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 202 ~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
.+.+++.++.. +.++|+.||..+ ...+++.
T Consensus 191 ~l~~~l~~~~~---~~tiilvsh~~~~~~~~~d~ 221 (257)
T PRK14246 191 AIEKLITELKN---EIAIVIVSHNPQQVARVADY 221 (257)
T ss_pred HHHHHHHHHhc---CcEEEEEECCHHHHHHhCCE
Confidence 88888887742 478999999985 3345543
No 430
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.67 E-value=5.2e-08 Score=100.88 Aligned_cols=153 Identities=20% Similarity=0.280 Sum_probs=96.9
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhc----------C------ccCCC-----ccccCceEEEEcCCchhhhccHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLE----------G------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~----------~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (688)
+..|+.++|+|+|||||||++..+.=. + .++.. ....+.+.++++.+.... .++.+++
T Consensus 47 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni 125 (271)
T PRK14238 47 IHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNV 125 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCcccc-ccHHHHH
Confidence 678999999999999999998754311 1 00100 001234566777665444 4777776
Q ss_pred HHhhcc-cc------cceeceee-ee---ccc-ccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHH
Q 005605 137 AEEMDV-TI------GEEVGYSI-RF---EDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (688)
Q Consensus 137 ~~~~~~-~~------~~~vg~~~-~~---~~~-~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ 202 (688)
...... .. ...+-... .+ +.. ...+..+..+|+|+.+++.+++.++.+++++|+|| +++|......
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~ 205 (271)
T PRK14238 126 TYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLK 205 (271)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHH
Confidence 532110 00 00000000 00 000 11245667899999999999999999999999999 7777777778
Q ss_pred HHHHHHHHHhcCCCcEEEEecccccH-HHHHch
Q 005605 203 LFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (688)
Q Consensus 203 ll~~l~~i~~~~~~~~vil~SAT~~~-~~~~~~ 234 (688)
+..+++.+.+ +..+|+.||.++. ..+++.
T Consensus 206 l~~~l~~~~~---~~tiiivsH~~~~i~~~~d~ 235 (271)
T PRK14238 206 VEELVQELKK---DYSIIIVTHNMQQAARISDK 235 (271)
T ss_pred HHHHHHHHHc---CCEEEEEEcCHHHHHHhCCE
Confidence 8888888743 4689999998853 455543
No 431
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.66 E-value=2.2e-08 Score=117.49 Aligned_cols=145 Identities=18% Similarity=0.300 Sum_probs=89.7
Q ss_pred HhcCCEEEEEeCCCCChhcchhHH-----------HhcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhc--
Q 005605 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD-- 141 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~-----------ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-- 141 (688)
+.+|+.++|+|++||||||++... .+++.++.. ...++.+.++++.|... .-++.+++.-...
T Consensus 476 i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf-~gTI~eNi~~~~~~~ 554 (686)
T TIGR03797 476 IEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLM-SGSIFENIAGGAPLT 554 (686)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccC-cccHHHHHhcCCCCC
Confidence 678999999999999999988743 333333322 11234566777766544 3467777643211
Q ss_pred ----ccccceeceeeeecccc-ccccc----ccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHH
Q 005605 142 ----VTIGEEVGYSIRFEDCS-SARTV----LKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (688)
Q Consensus 142 ----~~~~~~vg~~~~~~~~~-~~~~~----i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i 210 (688)
......+|......... ..++. -..+|+|+.+|+.++++++.+++++|||| ++.|......+.+.++.+
T Consensus 555 ~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~ 634 (686)
T TIGR03797 555 LDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL 634 (686)
T ss_pred HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh
Confidence 11111122110000000 01121 13589999999999999999999999999 566665555566665553
Q ss_pred HhcCCCcEEEEecccccH
Q 005605 211 LKNRPDLKLVVMSATLEA 228 (688)
Q Consensus 211 ~~~~~~~~vil~SAT~~~ 228 (688)
+..+|++||-+..
T Consensus 635 -----~~T~IiItHr~~~ 647 (686)
T TIGR03797 635 -----KVTRIVIAHRLST 647 (686)
T ss_pred -----CCeEEEEecChHH
Confidence 3588999998743
No 432
>PLN03211 ABC transporter G-25; Provisional
Probab=98.66 E-value=3.9e-08 Score=113.70 Aligned_cols=147 Identities=13% Similarity=0.144 Sum_probs=97.5
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhc-------------CccCCCccccCceEEEEcCCchhhhccHHHHHHHhhccc-
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLE-------------GVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT- 143 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~-------------~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~- 143 (688)
+.+|+.++|.||+||||||++....-. +.+.. ....+.+.++++++......++.+.+.-.....
T Consensus 91 i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~-~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~ 169 (659)
T PLN03211 91 ASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT-KQILKRTGFVTQDDILYPHLTVRETLVFCSLLRL 169 (659)
T ss_pred EECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc-hhhccceEEECcccccCCcCCHHHHHHHHHHhCC
Confidence 678999999999999999998753311 11110 011234556666666666678887774321110
Q ss_pred ---------------ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHH
Q 005605 144 ---------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL 206 (688)
Q Consensus 144 ---------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~ 206 (688)
+...+|..... +....+..+..+|+|+++|+.++..++.+++++++|| .++|......+.++
T Consensus 170 ~~~~~~~~~~~~v~~~l~~lgL~~~~-~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~ 248 (659)
T PLN03211 170 PKSLTKQEKILVAESVISELGLTKCE-NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLT 248 (659)
T ss_pred CCCCCHHHHHHHHHHHHHHcCChhhc-CceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHH
Confidence 01111211000 0000123355799999999999999999999999999 77888888889999
Q ss_pred HHHHHhcCCCcEEEEecccccH
Q 005605 207 LKEVLKNRPDLKLVVMSATLEA 228 (688)
Q Consensus 207 l~~i~~~~~~~~vil~SAT~~~ 228 (688)
++++.+. +..+|+.||.++.
T Consensus 249 L~~l~~~--g~TvI~~sH~~~~ 268 (659)
T PLN03211 249 LGSLAQK--GKTIVTSMHQPSS 268 (659)
T ss_pred HHHHHhC--CCEEEEEecCCCH
Confidence 9987653 6789999999864
No 433
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.66 E-value=2.4e-08 Score=113.72 Aligned_cols=149 Identities=17% Similarity=0.238 Sum_probs=92.4
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhc-
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (688)
.+.+|+.++|+|++||||||++.... +++.++.. ...++.+.+++++|... ..++.+++.-...
T Consensus 344 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~~ti~~Ni~~~~~~ 422 (529)
T TIGR02857 344 TVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLF-AGTIAENIRLARPD 422 (529)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCccc-CcCHHHHHhccCCC
Confidence 46799999999999999999887432 33332221 11233466777666554 4588888753211
Q ss_pred ---c---cccceeceeeeeccc-----ccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHH
Q 005605 142 ---V---TIGEEVGYSIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (688)
Q Consensus 142 ---~---~~~~~vg~~~~~~~~-----~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~ 208 (688)
. .....+|.....+.. ......-..+|+|+.+|+.++++++.+++++|+|| ++.|......+.+.+.
T Consensus 423 ~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~ 502 (529)
T TIGR02857 423 ASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALR 502 (529)
T ss_pred CCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHH
Confidence 0 111112211000000 00111224589999999999999999999999999 4555555555655555
Q ss_pred HHHhcCCCcEEEEecccccHH
Q 005605 209 EVLKNRPDLKLVVMSATLEAE 229 (688)
Q Consensus 209 ~i~~~~~~~~vil~SAT~~~~ 229 (688)
.+ .++..+|++||.++.-
T Consensus 503 ~~---~~~~t~i~itH~~~~~ 520 (529)
T TIGR02857 503 AL---AQGRTVLLVTHRLALA 520 (529)
T ss_pred Hh---cCCCEEEEEecCHHHH
Confidence 54 3478999999988543
No 434
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.66 E-value=7.4e-08 Score=98.47 Aligned_cols=60 Identities=10% Similarity=0.104 Sum_probs=52.7
Q ss_pred ccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEeccccc
Q 005605 166 YLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (688)
Q Consensus 166 ~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~ 227 (688)
.+|+|+.+++.++++++.+++++++|| +++|....+.+..+++.+.+. +..+|+.||.++
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~--~~tiii~sH~~~ 206 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDG--KRSFIIVTHYQR 206 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHH
Confidence 599999999999999999999999999 788888888888888887543 578999999875
No 435
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.65 E-value=8.5e-08 Score=99.51 Aligned_cols=146 Identities=10% Similarity=0.175 Sum_probs=86.2
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhcCccCCCc--cccCceEEEEcCCchhhhccHHHHHHHhhcc------cccceec
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETP--DRRRKMMIACTQPRRVAAMSVSRRVAEEMDV------TIGEEVG 149 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~--~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~------~~~~~vg 149 (688)
+..|+.++|+|+|||||||++..+.-. ...... .....+.++++.+.... .++.+++...... ......+
T Consensus 60 i~~Ge~~~liG~NGsGKSTLl~~I~Gl-~~p~~G~I~i~g~i~yv~q~~~l~~-~tv~enl~~~~~~~~~~~~~~l~~~~ 137 (282)
T cd03291 60 IEKGEMLAITGSTGSGKTSLLMLILGE-LEPSEGKIKHSGRISFSSQFSWIMP-GTIKENIIFGVSYDEYRYKSVVKACQ 137 (282)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCcEEEECCEEEEEeCcccccc-cCHHHHhhcccccCHHHHHHHHHHhC
Confidence 579999999999999999998864311 111110 00112455666654333 3666665421100 0000011
Q ss_pred eeeeeccc-----ccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHH-HHHHhcCCCcEEEE
Q 005605 150 YSIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL-KEVLKNRPDLKLVV 221 (688)
Q Consensus 150 ~~~~~~~~-----~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l-~~i~~~~~~~~vil 221 (688)
........ ......+..+|+|+.+++.+++.++.+++++|+|| +++|......++..+ +.+. . +..+|+
T Consensus 138 l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~--~~tIii 214 (282)
T cd03291 138 LEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-A--NKTRIL 214 (282)
T ss_pred CHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-C--CCEEEE
Confidence 10000000 01122345799999999999999999999999999 666666666666543 3432 2 568899
Q ss_pred ecccccH
Q 005605 222 MSATLEA 228 (688)
Q Consensus 222 ~SAT~~~ 228 (688)
.||.++.
T Consensus 215 isH~~~~ 221 (282)
T cd03291 215 VTSKMEH 221 (282)
T ss_pred EeCChHH
Confidence 9998854
No 436
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.65 E-value=5.3e-08 Score=99.62 Aligned_cols=72 Identities=19% Similarity=0.244 Sum_probs=57.6
Q ss_pred cccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEecccccH-HHHHch
Q 005605 161 RTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (688)
Q Consensus 161 ~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~~-~~~~~~ 234 (688)
+..+..+|+|+.+++.+++.++.+++++++|| ++.+......+..+++++.+. +..+|+.||.++. ..+++.
T Consensus 134 ~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~--~~tIIiiSHd~~~~~~~ad~ 208 (255)
T cd03236 134 DRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAED--DNYVLVVEHDLAVLDYLSDY 208 (255)
T ss_pred cCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEEECCHHHHHHhCCE
Confidence 45666799999999999999999999999999 666667777788888887653 5789999999853 334543
No 437
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.65 E-value=2e-08 Score=115.54 Aligned_cols=150 Identities=19% Similarity=0.254 Sum_probs=92.3
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhc-
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (688)
.+.+|+.++|+|++||||||++.... +++.++.. ....+.+.+++++|... .-++.+++.-...
T Consensus 354 ~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf-~~Ti~~Ni~~~~~~ 432 (571)
T TIGR02203 354 VIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLF-NDTIANNIAYGRTE 432 (571)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccc-cccHHHHHhcCCCC
Confidence 46789999999999999999987432 22222111 11123456777777544 4477777652210
Q ss_pred -------ccccceeceeeeecccc-cccccc----cccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHH
Q 005605 142 -------VTIGEEVGYSIRFEDCS-SARTVL----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (688)
Q Consensus 142 -------~~~~~~vg~~~~~~~~~-~~~~~i----~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l 207 (688)
......+|...-..... ..++.+ ..+|+|+++|+.+++.++.+++++|||| ++.|......+++.+
T Consensus 433 ~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L 512 (571)
T TIGR02203 433 QADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAAL 512 (571)
T ss_pred CCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 01111222110000000 011111 3589999999999999999999999999 666666666666666
Q ss_pred HHHHhcCCCcEEEEecccccHHH
Q 005605 208 KEVLKNRPDLKLVVMSATLEAEK 230 (688)
Q Consensus 208 ~~i~~~~~~~~vil~SAT~~~~~ 230 (688)
+.. .++..+|++||..+.-.
T Consensus 513 ~~~---~~~~tiIiitH~~~~~~ 532 (571)
T TIGR02203 513 ERL---MQGRTTLVIAHRLSTIE 532 (571)
T ss_pred HHH---hCCCEEEEEehhhHHHH
Confidence 554 34678999999975433
No 438
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.65 E-value=5.7e-08 Score=110.47 Aligned_cols=145 Identities=18% Similarity=0.217 Sum_probs=93.6
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhcCccC-CCc----cccCceEEEEcCCch-h-hhccHHHHHHHhhcc--------
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDI-ETP----DRRRKMMIACTQPRR-V-AAMSVSRRVAEEMDV-------- 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~-~~~----~~~~~~~i~~t~p~~-~-~~~~v~~~v~~~~~~-------- 142 (688)
+.+|+.++|+|+|||||||++..+. +... ... .....+.++++.+.. . ...++.+.+......
T Consensus 342 i~~Ge~~~l~G~NGsGKSTLl~~i~--G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 419 (530)
T PRK15064 342 LEAGERLAIIGENGVGKTTLLRTLV--GELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVR 419 (530)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHH
Confidence 6789999999999999999987643 2200 010 011235566665431 2 235666655421100
Q ss_pred cccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEE
Q 005605 143 TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLV 220 (688)
Q Consensus 143 ~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vi 220 (688)
.+...+|.. ....+..+..+|+|+.+++.+++.++.+++++|+|| +++|......+..+++.+ +..+|
T Consensus 420 ~~l~~~~l~-----~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-----~~tvi 489 (530)
T PRK15064 420 GTLGRLLFS-----QDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY-----EGTLI 489 (530)
T ss_pred HHHHHcCCC-----hhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC-----CCEEE
Confidence 011111110 012356678899999999999999999999999999 777777777777777664 34899
Q ss_pred Eeccccc-HHHHHch
Q 005605 221 VMSATLE-AEKFQGY 234 (688)
Q Consensus 221 l~SAT~~-~~~~~~~ 234 (688)
+.||..+ ...++++
T Consensus 490 ~vsHd~~~~~~~~d~ 504 (530)
T PRK15064 490 FVSHDREFVSSLATR 504 (530)
T ss_pred EEeCCHHHHHHhCCE
Confidence 9999985 3445543
No 439
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.65 E-value=3.3e-08 Score=116.45 Aligned_cols=151 Identities=23% Similarity=0.274 Sum_probs=91.7
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhh--
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEM-- 140 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~-- 140 (688)
.+..|+.++|+|++||||||++.... +++.++.. ...++.+.+++++|.... -++.+++.-..
T Consensus 496 ~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~l~~~~ 574 (708)
T TIGR01193 496 TIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFS-GSILENLLLGAKE 574 (708)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehh-HHHHHHHhccCCC
Confidence 36789999999999999999887432 22222211 112345667777765543 47777775321
Q ss_pred cc---c---ccceeceeeeecccc-cccc----cccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHH
Q 005605 141 DV---T---IGEEVGYSIRFEDCS-SART----VLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (688)
Q Consensus 141 ~~---~---~~~~vg~~~~~~~~~-~~~~----~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l 207 (688)
.. . .....|......... ..++ .-.-+|+|+.+|+.++++++.+++++|||| ++.|......+.+.+
T Consensus 575 ~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L 654 (708)
T TIGR01193 575 NVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNL 654 (708)
T ss_pred CCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 10 0 011111100000000 0112 223589999999999999999999999999 556555555566666
Q ss_pred HHHHhcCCCcEEEEecccccHHHHH
Q 005605 208 KEVLKNRPDLKLVVMSATLEAEKFQ 232 (688)
Q Consensus 208 ~~i~~~~~~~~vil~SAT~~~~~~~ 232 (688)
+.+ ++..+|+.||.++.-..+
T Consensus 655 ~~~----~~~T~IiitHr~~~~~~~ 675 (708)
T TIGR01193 655 LNL----QDKTIIFVAHRLSVAKQS 675 (708)
T ss_pred HHh----cCCEEEEEecchHHHHcC
Confidence 542 367889999998544333
No 440
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.65 E-value=7.2e-08 Score=99.56 Aligned_cols=151 Identities=17% Similarity=0.286 Sum_probs=94.9
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhc----------C------ccCC---C----ccccCceEEEEcCCchhhhccHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLE----------G------VDIE---T----PDRRRKMMIACTQPRRVAAMSVSR 134 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~----------~------~~~~---~----~~~~~~~~i~~t~p~~~~~~~v~~ 134 (688)
+..|+.++|+|++||||||++..+.-. + .+.. . ....+.+.++++++.... .++.+
T Consensus 39 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e 117 (265)
T PRK14252 39 VHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFP-KSIFE 117 (265)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCc-chHHH
Confidence 568999999999999999998754311 0 0000 0 001223556676665554 36666
Q ss_pred HHHHhhccc--------------ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChh
Q 005605 135 RVAEEMDVT--------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTL 198 (688)
Q Consensus 135 ~v~~~~~~~--------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~ 198 (688)
++....... ....+|..... ....+..+..+|+|+++++.++++++.+++++|+|| ++++..
T Consensus 118 ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~ 195 (265)
T PRK14252 118 NVAYGLRIRGVKRRSILEERVENALRNAALWDEV--KDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPI 195 (265)
T ss_pred HHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhh--hHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHH
Confidence 664321100 00011110000 011234566799999999999999999999999999 677777
Q ss_pred hHHHHHHHHHHHHhcCCCcEEEEecccccH-HHHHch
Q 005605 199 ATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (688)
Q Consensus 199 ~~d~ll~~l~~i~~~~~~~~vil~SAT~~~-~~~~~~ 234 (688)
....+.++++++.+ +..+|+.||.++. ..+++.
T Consensus 196 ~~~~l~~~l~~l~~---~~tiiivth~~~~~~~~~d~ 229 (265)
T PRK14252 196 ATASIEELISDLKN---KVTILIVTHNMQQAARVSDY 229 (265)
T ss_pred HHHHHHHHHHHHHh---CCEEEEEecCHHHHHHhCCE
Confidence 77778888887743 4688999998843 445543
No 441
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.65 E-value=2.9e-08 Score=116.84 Aligned_cols=142 Identities=23% Similarity=0.307 Sum_probs=94.9
Q ss_pred HHhcCCEEEEEeCCCCChhcchhH-----------HHhcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhcc
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~-----------~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (688)
.+..|+.+.++|++||||||.+.+ +++++.++.. ...+..+.++.+.| .+.+.++.+++......
T Consensus 375 ~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QeP-vlF~~tI~eNI~~G~~d 453 (1228)
T KOG0055|consen 375 KIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEP-VLFATTIRENIRYGKPD 453 (1228)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeech-hhhcccHHHHHhcCCCc
Confidence 367999999999999999998763 4455554433 22234566777777 56677888888543210
Q ss_pred -------ccc-----------ceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeeccc--CcChhhHHH
Q 005605 143 -------TIG-----------EEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEA--HERTLATDV 202 (688)
Q Consensus 143 -------~~~-----------~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEa--her~~~~d~ 202 (688)
+.. ...||.... .... ..+|+|+.+|++++++++.+|++|+|||| .+|......
T Consensus 454 at~~~i~~a~k~ana~~fi~~lp~g~~T~v-----ge~g-~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~ 527 (1228)
T KOG0055|consen 454 ATREEIEEAAKAANAHDFILKLPDGYDTLV-----GERG-VQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERV 527 (1228)
T ss_pred ccHHHHHHHHHHccHHHHHHhhHHhhcccc-----cCCC-CCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHH
Confidence 000 011222110 1111 23999999999999999999999999994 455555656
Q ss_pred HHHHHHHHHhcCCCcEEEEecccccH
Q 005605 203 LFGLLKEVLKNRPDLKLVVMSATLEA 228 (688)
Q Consensus 203 ll~~l~~i~~~~~~~~vil~SAT~~~ 228 (688)
+.+.|....+ ++++|+++|-+..
T Consensus 528 Vq~ALd~~~~---grTTivVaHRLSt 550 (1228)
T KOG0055|consen 528 VQEALDKASK---GRTTIVVAHRLST 550 (1228)
T ss_pred HHHHHHHhhc---CCeEEEEeeehhh
Confidence 6666666543 5689999998843
No 442
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.65 E-value=5.4e-08 Score=99.79 Aligned_cols=151 Identities=21% Similarity=0.298 Sum_probs=95.5
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHh----------cCc------cCCC-----ccccCceEEEEcCCchhhhccHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVL----------EGV------DIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll----------~~~------~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (688)
+..|+.++|+|+|||||||++..+.- .+. ++.. ....+.+.++++.+.... .++.+++
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~eni 107 (253)
T PRK14261 29 IPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFP-KSIYENV 107 (253)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCc-ccHHHHH
Confidence 56899999999999999999875541 110 1110 011234566676665443 4776666
Q ss_pred HHhhccc--------------ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhH
Q 005605 137 AEEMDVT--------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (688)
Q Consensus 137 ~~~~~~~--------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (688)
....... ....+|..... ....+..+..+|+|+.+++.+++.++.+++++++|| .++|....
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~ 185 (253)
T PRK14261 108 AYGPRIHGEKNKKTLDTIVEKSLKGAALWDEV--KDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIAT 185 (253)
T ss_pred HhhHHhcCCCCHHHHHHHHHHHHHHhcCchhh--HHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 4321100 00001110000 011345667899999999999999999999999999 66777777
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 201 DVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 201 d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
..+..+++.+.+ +..+|+.||.++ ...+++.
T Consensus 186 ~~l~~~l~~~~~---~~tvii~sh~~~~~~~~~d~ 217 (253)
T PRK14261 186 AKIEDLIEDLKK---EYTVIIVTHNMQQAARVSDY 217 (253)
T ss_pred HHHHHHHHHHhh---CceEEEEEcCHHHHHhhCCE
Confidence 778888887743 368899999884 3445543
No 443
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.63 E-value=5.6e-08 Score=99.48 Aligned_cols=150 Identities=22% Similarity=0.334 Sum_probs=95.6
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHh--c--------C------ccCCCc-----cccCceEEEEcCCchhhhccHHHHH
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVL--E--------G------VDIETP-----DRRRKMMIACTQPRRVAAMSVSRRV 136 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll--~--------~------~~~~~~-----~~~~~~~i~~t~p~~~~~~~v~~~v 136 (688)
+.+|+.++|.|++||||||++..+.- . + .++... ...+.+.++++++.... .++.+++
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~nl 104 (250)
T PRK14266 26 IPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFP-KSIFDNV 104 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCc-chHHHHH
Confidence 56899999999999999999875531 1 1 011100 11234667777765554 3677766
Q ss_pred HHhhccc-------c-------cceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhH
Q 005605 137 AEEMDVT-------I-------GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (688)
Q Consensus 137 ~~~~~~~-------~-------~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (688)
....... . ...+|...... ...+..+..+|+|+.+++.++++++.+++++++|| +..|....
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~--~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~ 182 (250)
T PRK14266 105 AYGLRIHGEDDEDFIEERVEESLKAAALWDEVK--DKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPIST 182 (250)
T ss_pred HhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHH--HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHH
Confidence 4321100 0 00111100000 11245567899999999999999999999999999 66777777
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHc
Q 005605 201 DVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 201 d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~ 233 (688)
..+..+++.+. . +..+|+.||.++ ...+++
T Consensus 183 ~~l~~~l~~~~-~--~~tiii~sh~~~~~~~~~~ 213 (250)
T PRK14266 183 TKIEDLIHKLK-E--DYTIVIVTHNMQQATRVSK 213 (250)
T ss_pred HHHHHHHHHHh-c--CCeEEEEECCHHHHHhhcC
Confidence 77888888773 2 568899999874 344443
No 444
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.63 E-value=2.8e-08 Score=116.74 Aligned_cols=152 Identities=21% Similarity=0.284 Sum_probs=92.2
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhc-
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (688)
.+.+|+.++|+|++||||||++.... +++.++.. ...++.+.++++.|... .-++.+++.-...
T Consensus 487 ~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf-~~TI~eNi~~~~~~ 565 (694)
T TIGR03375 487 TIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLF-YGTLRDNIALGAPY 565 (694)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhh-hhhHHHHHhCCCCC
Confidence 36789999999999999999887432 22222211 11123455666655443 4577777753211
Q ss_pred ------ccccceeceeeeecccc-cccc----cccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHH
Q 005605 142 ------VTIGEEVGYSIRFEDCS-SART----VLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (688)
Q Consensus 142 ------~~~~~~vg~~~~~~~~~-~~~~----~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~ 208 (688)
......+|......... ..++ .-..+|+|+.+|+.++++++.+++++|||| ++.|......+.+.+.
T Consensus 566 ~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~ 645 (694)
T TIGR03375 566 ADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLK 645 (694)
T ss_pred CCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 00111112110000000 0111 123599999999999999999999999999 5565555655666665
Q ss_pred HHHhcCCCcEEEEecccccHHHHH
Q 005605 209 EVLKNRPDLKLVVMSATLEAEKFQ 232 (688)
Q Consensus 209 ~i~~~~~~~~vil~SAT~~~~~~~ 232 (688)
.+. ++..+|++||-++.-..+
T Consensus 646 ~~~---~~~T~iiItHrl~~~~~~ 666 (694)
T TIGR03375 646 RWL---AGKTLVLVTHRTSLLDLV 666 (694)
T ss_pred HHh---CCCEEEEEecCHHHHHhC
Confidence 543 467899999998544333
No 445
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.63 E-value=8.7e-08 Score=111.36 Aligned_cols=150 Identities=15% Similarity=0.184 Sum_probs=90.7
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHHhcCccCCC----ccccCceEEEEcCCchhhhccHHHHHHHhhc-----------
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIET----PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD----------- 141 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~----~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~----------- 141 (688)
.+.+|+.++|+|||||||||++....=. .+... ....+.+.+++++|.... .++.+++.....
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl-~~~~~G~i~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~ 551 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSLFRILGEL-WPVYGGRLTKPAKGKLFYVPQRPYMTL-GTLRDQIIYPDSSEDMKRRGLSD 551 (659)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCCeEeecCCCcEEEECCCCCCCC-cCHHHHHhcCCChhhhhccCCCH
Confidence 3568999999999999999998753311 11111 011234567777765443 377777653210
Q ss_pred ---ccccceeceeeeecc---cccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhc
Q 005605 142 ---VTIGEEVGYSIRFED---CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKN 213 (688)
Q Consensus 142 ---~~~~~~vg~~~~~~~---~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~ 213 (688)
......+|.....+. ..........+|+|+.+|+.++++++.+++++|||| ++.|....+.+.+.+++
T Consensus 552 ~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---- 627 (659)
T TIGR00954 552 KDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---- 627 (659)
T ss_pred HHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH----
Confidence 001111221100000 000111235699999999999999999999999999 56655555555555443
Q ss_pred CCCcEEEEecccccHHHHHc
Q 005605 214 RPDLKLVVMSATLEAEKFQG 233 (688)
Q Consensus 214 ~~~~~vil~SAT~~~~~~~~ 233 (688)
. +..+|+.||.++...+++
T Consensus 628 ~-~~tvI~isH~~~~~~~~d 646 (659)
T TIGR00954 628 F-GITLFSVSHRKSLWKYHE 646 (659)
T ss_pred c-CCEEEEEeCchHHHHhCC
Confidence 2 678999999986544443
No 446
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.63 E-value=3.7e-08 Score=112.54 Aligned_cols=149 Identities=15% Similarity=0.216 Sum_probs=81.8
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCCc---cccCceEEEEcCCchhhhccHHHHHH----H
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP---DRRRKMMIACTQPRRVAAMSVSRRVA----E 138 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~---~~~~~~~i~~t~p~~~~~~~v~~~v~----~ 138 (688)
.+.+|+.++|+||+||||||++.... +++.++... ...+.+.++++.+.... .++.++.. .
T Consensus 364 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~-~ti~~n~~~~~~~ 442 (555)
T TIGR01194 364 RIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFD-DLIGPDEGEHASL 442 (555)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhh-hhhhcccccchhH
Confidence 36799999999999999999987432 222222110 11123345554443221 12221110 0
Q ss_pred hhcccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHH-HHHHhcCC
Q 005605 139 EMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL-KEVLKNRP 215 (688)
Q Consensus 139 ~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l-~~i~~~~~ 215 (688)
+.-......+|...........-.....+|+|+.+|+.++++++.+++++|+|| ++.|......+.+.+ +.+.. .
T Consensus 443 ~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~--~ 520 (555)
T TIGR01194 443 DNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKR--Q 520 (555)
T ss_pred HHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh--C
Confidence 000011111221110000000001125699999999999999999999999999 566655555555433 33322 2
Q ss_pred CcEEEEecccccH
Q 005605 216 DLKLVVMSATLEA 228 (688)
Q Consensus 216 ~~~vil~SAT~~~ 228 (688)
+..+|++||.+..
T Consensus 521 ~~tiiiisH~~~~ 533 (555)
T TIGR01194 521 GKTIIIISHDDQY 533 (555)
T ss_pred CCEEEEEeccHHH
Confidence 6789999998753
No 447
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=98.63 E-value=4.3e-08 Score=113.20 Aligned_cols=143 Identities=17% Similarity=0.272 Sum_probs=96.5
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhc--------------CccCCCccccCceEEEEcCCchhhhccHHHHHHHhhccc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLE--------------GVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~--------------~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (688)
+..|+.++|.||+||||||++....-. +.+.......+.+.++++++......++.+++.-.....
T Consensus 48 i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~ 127 (617)
T TIGR00955 48 AKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLR 127 (617)
T ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcC
Confidence 678999999999999999988743311 110000011223467777776666778888775322111
Q ss_pred ----------------ccceeceeeeecccccccccc------cccCHHHHHHHHhccccccCCcEEeecc--cCcChhh
Q 005605 144 ----------------IGEEVGYSIRFEDCSSARTVL------KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLA 199 (688)
Q Consensus 144 ----------------~~~~vg~~~~~~~~~~~~~~i------~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~ 199 (688)
+....|.. ...++.+ .-+|+|+.+|+.++..++.+++++++|| .++|...
T Consensus 128 ~~~~~~~~~~~~~v~~~l~~lgL~------~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~ 201 (617)
T TIGR00955 128 MPRRVTKKEKRERVDEVLQALGLR------KCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFM 201 (617)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCch------hcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHH
Confidence 11111211 0112333 3599999999999999999999999999 6777778
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEecccccH
Q 005605 200 TDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (688)
Q Consensus 200 ~d~ll~~l~~i~~~~~~~~vil~SAT~~~ 228 (688)
...+...++++.+. +..+|+.+|....
T Consensus 202 ~~~l~~~L~~l~~~--g~tvi~~~hq~~~ 228 (617)
T TIGR00955 202 AYSVVQVLKGLAQK--GKTIICTIHQPSS 228 (617)
T ss_pred HHHHHHHHHHHHhC--CCEEEEEeCCCCH
Confidence 88888888887653 6788888888753
No 448
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.63 E-value=5.3e-08 Score=111.93 Aligned_cols=148 Identities=19% Similarity=0.226 Sum_probs=92.0
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhcc
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (688)
.+.+|+.++|+|++||||||++.... +++.++.. ....+.+.+++++|... ..++.+++.-....
T Consensus 357 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf-~~ti~~Ni~~~~~~ 435 (585)
T TIGR01192 357 EAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLF-NRSIRENIRLGREG 435 (585)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccC-cccHHHHHhcCCCC
Confidence 36799999999999999999987432 12211111 11123456667666544 35777777532110
Q ss_pred ----c---ccceeceeeeeccc-----ccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHH
Q 005605 143 ----T---IGEEVGYSIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (688)
Q Consensus 143 ----~---~~~~vg~~~~~~~~-----~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~ 208 (688)
. ....+|........ .........+|+|+.+|+.++++++.+++++|+|| ++.|......+.+.+.
T Consensus 436 ~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~ 515 (585)
T TIGR01192 436 ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAID 515 (585)
T ss_pred CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHH
Confidence 0 00111111000000 11123345699999999999999999999999999 6676666666777776
Q ss_pred HHHhcCCCcEEEEecccccH
Q 005605 209 EVLKNRPDLKLVVMSATLEA 228 (688)
Q Consensus 209 ~i~~~~~~~~vil~SAT~~~ 228 (688)
.+. ++..+|++||-.+.
T Consensus 516 ~~~---~~~tvI~isH~~~~ 532 (585)
T TIGR01192 516 ALR---KNRTTFIIAHRLST 532 (585)
T ss_pred HHh---CCCEEEEEEcChHH
Confidence 652 36789999998743
No 449
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.62 E-value=2.5e-08 Score=102.46 Aligned_cols=148 Identities=17% Similarity=0.233 Sum_probs=88.3
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhc--
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD-- 141 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-- 141 (688)
+..|+.++|+|++||||||++..+. +++.++.. ....+.+.++++.+... ..++.+++.....
T Consensus 44 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~-~~tv~~nl~~~~~~~ 122 (257)
T cd03288 44 IKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILF-SGSIRFNLDPECKCT 122 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCccc-ccHHHHhcCcCCCCC
Confidence 5689999999999999999987432 11111111 01122455666655332 2344433321000
Q ss_pred ----ccccceeceeeeecc-----cccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHH
Q 005605 142 ----VTIGEEVGYSIRFED-----CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (688)
Q Consensus 142 ----~~~~~~vg~~~~~~~-----~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i 210 (688)
.......|.....+. ..........+|+|+++++.++++++.+++++|+|| ++.+....+.+..+++.+
T Consensus 123 ~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~ 202 (257)
T cd03288 123 DDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTA 202 (257)
T ss_pred HHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh
Confidence 000001111100000 001123456799999999999999999999999999 667777777777777765
Q ss_pred HhcCCCcEEEEecccccHH
Q 005605 211 LKNRPDLKLVVMSATLEAE 229 (688)
Q Consensus 211 ~~~~~~~~vil~SAT~~~~ 229 (688)
. .+..+|++||.++.-
T Consensus 203 ~---~~~tiii~sh~~~~~ 218 (257)
T cd03288 203 F---ADRTVVTIAHRVSTI 218 (257)
T ss_pred c---CCCEEEEEecChHHH
Confidence 2 267899999998643
No 450
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.62 E-value=2.2e-08 Score=115.40 Aligned_cols=151 Identities=20% Similarity=0.265 Sum_probs=92.2
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhc--
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD-- 141 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-- 141 (688)
+.+|+.++|+|++||||||++..+. +++.++.. ....+.+.++++++... .-++.+++.-...
T Consensus 366 i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf-~~Ti~~Ni~~~~~~~ 444 (582)
T PRK11176 366 IPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLF-NDTIANNIAYARTEQ 444 (582)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceee-cchHHHHHhcCCCCC
Confidence 6789999999999999999987433 22222211 11123456666666544 3577777753211
Q ss_pred ---cc---ccceeceeeeeccc-ccccccc----cccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHH
Q 005605 142 ---VT---IGEEVGYSIRFEDC-SSARTVL----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (688)
Q Consensus 142 ---~~---~~~~vg~~~~~~~~-~~~~~~i----~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~ 208 (688)
.. ....+|.....+.. ...++.+ ..+|+|+.+|+.++++++.+++++|+|| ++.|......+.+.++
T Consensus 445 ~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~ 524 (582)
T PRK11176 445 YSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALD 524 (582)
T ss_pred CCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 00 11112211000000 0011222 3489999999999999999999999999 6666666666666665
Q ss_pred HHHhcCCCcEEEEecccccHHHHH
Q 005605 209 EVLKNRPDLKLVVMSATLEAEKFQ 232 (688)
Q Consensus 209 ~i~~~~~~~~vil~SAT~~~~~~~ 232 (688)
.+ .++..+|++||.+..-..+
T Consensus 525 ~~---~~~~tvI~VtHr~~~~~~~ 545 (582)
T PRK11176 525 EL---QKNRTSLVIAHRLSTIEKA 545 (582)
T ss_pred HH---hCCCEEEEEecchHHHHhC
Confidence 54 2367899999998543333
No 451
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.62 E-value=6.1e-08 Score=107.59 Aligned_cols=151 Identities=21% Similarity=0.279 Sum_probs=94.2
Q ss_pred HhcCCEEEEEeCCCCChhcchhHH-----HhcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhcc---------c
Q 005605 78 LKANQVIILVGETGSGKTTQIPQF-----VLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV---------T 143 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~-----ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~---------~ 143 (688)
+..|+.+.|.|++||||||++..+ .-.+. +.-+ ...+...+|++|...+- ++.+.++-.... .
T Consensus 416 v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~-I~~P-~~~~~lflpQ~PY~p~G-tLre~l~YP~~~~~~~d~~l~~ 492 (604)
T COG4178 416 VRPGERLLITGESGAGKTSLLRALAGLWPWGSGR-ISMP-ADSALLFLPQRPYLPQG-TLREALCYPNAAPDFSDAELVA 492 (604)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhccCccCCCc-eecC-CCCceEEecCCCCCCCc-cHHHHHhCCCCCCCCChHHHHH
Confidence 568999999999999999998732 22222 2222 12245677888765544 666655433221 1
Q ss_pred ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecccC--cChhhHHHHHHHHHHHHhcCCCcEEEE
Q 005605 144 IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAH--ERTLATDVLFGLLKEVLKNRPDLKLVV 221 (688)
Q Consensus 144 ~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEah--er~~~~d~ll~~l~~i~~~~~~~~vil 221 (688)
+...||...-.+.......--.++|+|+++|+..++.++.+|+++|||||= .|....+.+++++ ..+.|+..+|-
T Consensus 493 vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l---~~~lp~~tvIS 569 (604)
T COG4178 493 VLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLL---KEELPDATVIS 569 (604)
T ss_pred HHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHH---HhhCCCCEEEE
Confidence 223333221111111122233479999999999999999999999999953 3333333344444 34557899999
Q ss_pred ecccccHHHHHch
Q 005605 222 MSATLEAEKFQGY 234 (688)
Q Consensus 222 ~SAT~~~~~~~~~ 234 (688)
++|.-....+.+.
T Consensus 570 V~Hr~tl~~~h~~ 582 (604)
T COG4178 570 VGHRPTLWNFHSR 582 (604)
T ss_pred eccchhhHHHHhh
Confidence 9998766665544
No 452
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.62 E-value=2.5e-08 Score=117.59 Aligned_cols=151 Identities=16% Similarity=0.159 Sum_probs=91.1
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhc-
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (688)
.+..|+.++|+|++||||||++.... +++.++.. ...++.+.+++++|... ..++.+++.-...
T Consensus 501 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf-~gTi~eNi~l~~~~ 579 (710)
T TIGR03796 501 TLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLF-EGTVRDNLTLWDPT 579 (710)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhh-hccHHHHhhCCCCC
Confidence 36789999999999999999887432 22222211 11234566777766544 4577777752110
Q ss_pred ------ccccceeceeeeecccc-ccccc----ccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHH
Q 005605 142 ------VTIGEEVGYSIRFEDCS-SARTV----LKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (688)
Q Consensus 142 ------~~~~~~vg~~~~~~~~~-~~~~~----i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~ 208 (688)
......+|......... ..++. -.-+|+|+.+|+.++++++.+++++|||| ++.|......+.+.++
T Consensus 580 ~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~ 659 (710)
T TIGR03796 580 IPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLR 659 (710)
T ss_pred CCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 01111112110000000 01111 23589999999999999999999999999 5555555555555554
Q ss_pred HHHhcCCCcEEEEecccccHHHHHc
Q 005605 209 EVLKNRPDLKLVVMSATLEAEKFQG 233 (688)
Q Consensus 209 ~i~~~~~~~~vil~SAT~~~~~~~~ 233 (688)
. . +..+|++||-++.-..++
T Consensus 660 ~----~-~~T~IiitHrl~~i~~~D 679 (710)
T TIGR03796 660 R----R-GCTCIIVAHRLSTIRDCD 679 (710)
T ss_pred h----c-CCEEEEEecCHHHHHhCC
Confidence 3 2 678999999985443333
No 453
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.62 E-value=2.7e-08 Score=114.70 Aligned_cols=152 Identities=21% Similarity=0.244 Sum_probs=92.7
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhc-
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (688)
.+.+|+.++|+|++||||||++.... +++.++.. ...++.+.++++.|... .-++.+++.-...
T Consensus 357 ~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~~Ni~~~~~~ 435 (588)
T PRK13657 357 EAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLF-NRSIEDNIRVGRPD 435 (588)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccc-cccHHHHHhcCCCC
Confidence 36799999999999999999987433 22221111 11134566777776544 4577777753211
Q ss_pred ---c---cccceeceeeeecccc-cccc----cccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHH
Q 005605 142 ---V---TIGEEVGYSIRFEDCS-SART----VLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (688)
Q Consensus 142 ---~---~~~~~vg~~~~~~~~~-~~~~----~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~ 208 (688)
. .....+|......... ..++ .-..+|+|+.+|+.++++++.+++++|+|| ++.|......+++.+.
T Consensus 436 ~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~ 515 (588)
T PRK13657 436 ATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALD 515 (588)
T ss_pred CCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 0 0111122110000000 0111 223599999999999999999999999999 5665555555555555
Q ss_pred HHHhcCCCcEEEEecccccHHHHH
Q 005605 209 EVLKNRPDLKLVVMSATLEAEKFQ 232 (688)
Q Consensus 209 ~i~~~~~~~~vil~SAT~~~~~~~ 232 (688)
.. .++..+|++||..+.-..+
T Consensus 516 ~~---~~~~tvIiitHr~~~~~~~ 536 (588)
T PRK13657 516 EL---MKGRTTFIIAHRLSTVRNA 536 (588)
T ss_pred HH---hcCCEEEEEEecHHHHHhC
Confidence 43 3467899999998544333
No 454
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.61 E-value=5e-08 Score=96.46 Aligned_cols=75 Identities=20% Similarity=0.242 Sum_probs=65.9
Q ss_pred ccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEecccc-cHHHHHchh
Q 005605 160 ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATL-EAEKFQGYF 235 (688)
Q Consensus 160 ~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~-~~~~~~~~~ 235 (688)
.+.++.-+|.|+..+.-++.++|.+++++.||| +++|-...+.+.+.+++..+.+ +..+++.||.+ +++.+++..
T Consensus 150 lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~-~aTVllTTH~~~di~~lc~rv 227 (325)
T COG4586 150 LKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEER-QATVLLTTHIFDDIATLCDRV 227 (325)
T ss_pred hhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhh-CceEEEEecchhhHHHhhhhe
Confidence 356667799999999999999999999999999 7888888888999999998887 88999999999 678888653
No 455
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.61 E-value=2.8e-08 Score=116.74 Aligned_cols=148 Identities=21% Similarity=0.292 Sum_probs=87.6
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhc-
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (688)
.+.+|+.++|+|++||||||++.... +++.++.. ....+.+.+++++|... ..++.+++.-...
T Consensus 503 ~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF-~gTIreNI~~g~~~ 581 (711)
T TIGR00958 503 TLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLF-SGSVRENIAYGLTD 581 (711)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCcccc-ccCHHHHHhcCCCC
Confidence 36799999999999999999887432 33322211 11233566777666544 4577777753211
Q ss_pred ------ccccceeceeeeecccc-ccccc----ccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHH
Q 005605 142 ------VTIGEEVGYSIRFEDCS-SARTV----LKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (688)
Q Consensus 142 ------~~~~~~vg~~~~~~~~~-~~~~~----i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~ 208 (688)
......+|.....+... ..++. -..+|+|+.+|+.++++++.+++++|+|| ++.|......+.+
T Consensus 582 ~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--- 658 (711)
T TIGR00958 582 TPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--- 658 (711)
T ss_pred CCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH---
Confidence 01111112110000000 01121 23589999999999999999999999999 4444433333333
Q ss_pred HHHhcCCCcEEEEecccccHHH
Q 005605 209 EVLKNRPDLKLVVMSATLEAEK 230 (688)
Q Consensus 209 ~i~~~~~~~~vil~SAT~~~~~ 230 (688)
....++..+|++||.++.-.
T Consensus 659 --~~~~~~~TvIiItHrl~~i~ 678 (711)
T TIGR00958 659 --SRSRASRTVLLIAHRLSTVE 678 (711)
T ss_pred --hhccCCCeEEEEeccHHHHH
Confidence 22234789999999985433
No 456
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.61 E-value=4.8e-08 Score=111.53 Aligned_cols=148 Identities=19% Similarity=0.214 Sum_probs=85.6
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC---ccccCceEEEEcCCchhhhccHHHH---HHHhh
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRR---VAEEM 140 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~---v~~~~ 140 (688)
+.+|+.++|+|++||||||++.... +++.++.. ....+.+.++++++.... .++.++ ...+.
T Consensus 346 i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~n~~~~~~~~ 424 (547)
T PRK10522 346 IKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFD-QLLGPEGKPANPAL 424 (547)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHH-HhhccccCchHHHH
Confidence 6799999999999999999887433 22222221 111234556666654332 122111 00000
Q ss_pred cccccceeceeeeecccccccc--cccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCC
Q 005605 141 DVTIGEEVGYSIRFEDCSSART--VLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPD 216 (688)
Q Consensus 141 ~~~~~~~vg~~~~~~~~~~~~~--~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~ 216 (688)
-......+|...... .... .=..+|+|+.+|+.++++++.+++++|+|| ++.|......+.+.+....+. .+
T Consensus 425 ~~~~~~~~~l~~~~~---~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~-~~ 500 (547)
T PRK10522 425 VEKWLERLKMAHKLE---LEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQE-MG 500 (547)
T ss_pred HHHHHHHcCCchhhh---ccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHh-CC
Confidence 000111111110000 0000 013589999999999999999999999999 566666666666666554432 26
Q ss_pred cEEEEecccccHHH
Q 005605 217 LKLVVMSATLEAEK 230 (688)
Q Consensus 217 ~~vil~SAT~~~~~ 230 (688)
..+|++||..+.-.
T Consensus 501 ~tvi~itH~~~~~~ 514 (547)
T PRK10522 501 KTIFAISHDDHYFI 514 (547)
T ss_pred CEEEEEEechHHHH
Confidence 78999999874433
No 457
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.59 E-value=1.2e-07 Score=108.45 Aligned_cols=151 Identities=19% Similarity=0.195 Sum_probs=94.9
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhcCccCCC---ccccCceEEEEcCC-chhhhccHHHHHHHhhccc-ccc---ee-
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIET---PDRRRKMMIACTQP-RRVAAMSVSRRVAEEMDVT-IGE---EV- 148 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~---~~~~~~~~i~~t~p-~~~~~~~v~~~v~~~~~~~-~~~---~v- 148 (688)
+..|+.++|+|+|||||||++..+.-....... ......+.++++.+ ......++.+++....... ... ..
T Consensus 347 i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~ 426 (556)
T PRK11819 347 LPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSR 426 (556)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHH
Confidence 678999999999999999998865421110000 00011345666654 2334467777765321100 000 00
Q ss_pred ceeeeeccc-ccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEeccc
Q 005605 149 GYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSAT 225 (688)
Q Consensus 149 g~~~~~~~~-~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT 225 (688)
.+...+.-. ...+..+..+|+|+++++.+++.++.+++++|||| +++|....+.+..+++.+ .+ .+|+.||.
T Consensus 427 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~-tvi~vtHd 501 (556)
T PRK11819 427 AYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF----PG-CAVVISHD 501 (556)
T ss_pred HHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CC-eEEEEECC
Confidence 000001100 11355677899999999999999999999999999 788888888888877765 23 68999998
Q ss_pred cc-HHHHHc
Q 005605 226 LE-AEKFQG 233 (688)
Q Consensus 226 ~~-~~~~~~ 233 (688)
++ ...+++
T Consensus 502 ~~~~~~~~d 510 (556)
T PRK11819 502 RWFLDRIAT 510 (556)
T ss_pred HHHHHHhCC
Confidence 84 445554
No 458
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.59 E-value=1.5e-07 Score=104.91 Aligned_cols=145 Identities=23% Similarity=0.263 Sum_probs=87.9
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHHhcCccCCC-cccc--CceEEEEcCCchhhhccHHHHHHHhhc------------
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIET-PDRR--RKMMIACTQPRRVAAMSVSRRVAEEMD------------ 141 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~-~~~~--~~~~i~~t~p~~~~~~~v~~~v~~~~~------------ 141 (688)
.+..|+.++++|+||+||||++..+.=....... .... ..+.++.+.+......++.+.+.....
T Consensus 25 ~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~ 104 (530)
T COG0488 25 TLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEA 104 (530)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHH
Confidence 4678999999999999999998864322111111 0011 134556665554444444443321100
Q ss_pred -c---------------cccceeceeeeec--------ccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCc
Q 005605 142 -V---------------TIGEEVGYSIRFE--------DCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHE 195 (688)
Q Consensus 142 -~---------------~~~~~vg~~~~~~--------~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--ahe 195 (688)
. .....-||..... ......+.+..+|+|+..|+++++.++.++++|+||| -|+
T Consensus 105 ~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHL 184 (530)
T COG0488 105 YALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHL 184 (530)
T ss_pred HHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccc
Confidence 0 0000001111000 0011156777899999999999999999999999999 787
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcEEEEecccc
Q 005605 196 RTLATDVLFGLLKEVLKNRPDLKLVVMSATL 226 (688)
Q Consensus 196 r~~~~d~ll~~l~~i~~~~~~~~vil~SAT~ 226 (688)
|......+.+.|+. +++ .+|++||+-
T Consensus 185 D~~~i~WLe~~L~~----~~g-tviiVSHDR 210 (530)
T COG0488 185 DLESIEWLEDYLKR----YPG-TVIVVSHDR 210 (530)
T ss_pred CHHHHHHHHHHHHh----CCC-cEEEEeCCH
Confidence 66666666555554 556 899999985
No 459
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.59 E-value=8.7e-08 Score=111.11 Aligned_cols=152 Identities=20% Similarity=0.195 Sum_probs=93.0
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHHhcCccCCC-c--cccCceEEEEcCCc-hhhhccHHHHHHHhhc-cccc---cee
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIET-P--DRRRKMMIACTQPR-RVAAMSVSRRVAEEMD-VTIG---EEV 148 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~-~--~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~~-~~~~---~~v 148 (688)
.+..|+.++|+|+|||||||++..+.-....... . .....+.++++.+. .....++.+++..... .... ..+
T Consensus 341 ~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~ 420 (635)
T PRK11147 341 QVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHV 420 (635)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccchHHHH
Confidence 3679999999999999999998765421110000 0 00112445554432 3344577777654211 0000 000
Q ss_pred -ceeeeeccc-ccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEecc
Q 005605 149 -GYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSA 224 (688)
Q Consensus 149 -g~~~~~~~~-~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SA 224 (688)
.+...+.-. ......+..+|+|+.+|+.+++.++.+++++|||| .|+|....+.+..+++.+ +..+|++||
T Consensus 421 ~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~-----~~tvi~vSH 495 (635)
T PRK11147 421 LGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY-----QGTVLLVSH 495 (635)
T ss_pred HHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-----CCeEEEEEC
Confidence 000011000 11355677899999999999999999999999999 787777777777666653 347999999
Q ss_pred ccc-HHHHHc
Q 005605 225 TLE-AEKFQG 233 (688)
Q Consensus 225 T~~-~~~~~~ 233 (688)
..+ ...+++
T Consensus 496 d~~~~~~~~d 505 (635)
T PRK11147 496 DRQFVDNTVT 505 (635)
T ss_pred CHHHHHHhcC
Confidence 974 344444
No 460
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.59 E-value=1.2e-07 Score=108.26 Aligned_cols=151 Identities=19% Similarity=0.183 Sum_probs=94.3
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhcCccCCC-c--cccCceEEEEcCCc-hhhhccHHHHHHHhhcc-cccc-e--e-
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIET-P--DRRRKMMIACTQPR-RVAAMSVSRRVAEEMDV-TIGE-E--V- 148 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~-~--~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~~~-~~~~-~--v- 148 (688)
+..|+.++|+|+|||||||++..+.-....... . .....+.++++.+. .....++.+++...... .... . .
T Consensus 345 i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~ 424 (552)
T TIGR03719 345 LPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSR 424 (552)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHH
Confidence 678999999999999999998865311110000 0 00113456666542 33345777776542210 0000 0 0
Q ss_pred ceeeeecccc-cccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEeccc
Q 005605 149 GYSIRFEDCS-SARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSAT 225 (688)
Q Consensus 149 g~~~~~~~~~-~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT 225 (688)
.+...+.-.. ..+..+..+|+|+.+++.+++.++.+++++|||| +++|....+.+..+++.+ . + .+|+.||.
T Consensus 425 ~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~-~-~viivsHd 499 (552)
T TIGR03719 425 AYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF---A-G-CAVVISHD 499 (552)
T ss_pred HHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC---C-C-eEEEEeCC
Confidence 0000010001 1245677899999999999999999999999999 788888888888877775 1 3 68999998
Q ss_pred cc-HHHHHc
Q 005605 226 LE-AEKFQG 233 (688)
Q Consensus 226 ~~-~~~~~~ 233 (688)
++ +..+++
T Consensus 500 ~~~~~~~~d 508 (552)
T TIGR03719 500 RWFLDRIAT 508 (552)
T ss_pred HHHHHHhCC
Confidence 85 344544
No 461
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.59 E-value=8.6e-08 Score=110.99 Aligned_cols=147 Identities=19% Similarity=0.153 Sum_probs=89.8
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHHhcCccCCC-cc--ccCceEEEEcCCch-h-hhccHHHHHHHhhc-------ccc
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIET-PD--RRRKMMIACTQPRR-V-AAMSVSRRVAEEMD-------VTI 144 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~-~~--~~~~~~i~~t~p~~-~-~~~~v~~~v~~~~~-------~~~ 144 (688)
.+..|+.++|+|||||||||++..+.-...+... .. ....+.++++.+.. + ...++.+.+..... ..+
T Consensus 334 ~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (638)
T PRK10636 334 NLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDY 413 (638)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHH
Confidence 3678999999999999999998865421110010 00 01123444443211 1 11233333321100 001
Q ss_pred cceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEe
Q 005605 145 GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVM 222 (688)
Q Consensus 145 ~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~ 222 (688)
...+|.. ....+..+..+|+|+.+|+.+++.++.+++++|||| .|+|......+..+++.+ +..+|++
T Consensus 414 L~~~~l~-----~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-----~gtvi~v 483 (638)
T PRK10636 414 LGGFGFQ-----GDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF-----EGALVVV 483 (638)
T ss_pred HHHcCCC-----hhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-----CCeEEEE
Confidence 1111110 012345678899999999999999999999999999 888888888888887765 2379999
Q ss_pred ccccc-HHHHHc
Q 005605 223 SATLE-AEKFQG 233 (688)
Q Consensus 223 SAT~~-~~~~~~ 233 (688)
||.++ ...+++
T Consensus 484 SHd~~~~~~~~d 495 (638)
T PRK10636 484 SHDRHLLRSTTD 495 (638)
T ss_pred eCCHHHHHHhCC
Confidence 99874 344443
No 462
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.58 E-value=4.6e-08 Score=112.16 Aligned_cols=148 Identities=16% Similarity=0.225 Sum_probs=91.2
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhc-
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (688)
.+.+|+.++|+|++||||||++.... +++.++.. ...++.+.+++++|.... -++.+++.-...
T Consensus 337 ~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~~~ 415 (569)
T PRK10789 337 TLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFS-DTVANNIALGRPD 415 (569)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeecc-ccHHHHHhcCCCC
Confidence 36799999999999999999887432 11111111 011234566676665443 477777643210
Q ss_pred c------cccceeceeeeeccc-----ccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHH
Q 005605 142 V------TIGEEVGYSIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (688)
Q Consensus 142 ~------~~~~~vg~~~~~~~~-----~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~ 208 (688)
. .....+|........ ......-..+|+|+.+|+.++++++.+++++|+|| ++.|....+.+.+.++
T Consensus 416 ~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~ 495 (569)
T PRK10789 416 ATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLR 495 (569)
T ss_pred CCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 0 001111111000000 00112234589999999999999999999999999 6666666777777776
Q ss_pred HHHhcCCCcEEEEecccccH
Q 005605 209 EVLKNRPDLKLVVMSATLEA 228 (688)
Q Consensus 209 ~i~~~~~~~~vil~SAT~~~ 228 (688)
.+. ++..+|+.||-++.
T Consensus 496 ~~~---~~~tii~itH~~~~ 512 (569)
T PRK10789 496 QWG---EGRTVIISAHRLSA 512 (569)
T ss_pred HHh---CCCEEEEEecchhH
Confidence 653 36789999998754
No 463
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.58 E-value=1e-07 Score=107.47 Aligned_cols=67 Identities=16% Similarity=0.238 Sum_probs=57.6
Q ss_pred ccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEeccccc
Q 005605 160 ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (688)
Q Consensus 160 ~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~ 227 (688)
.+..+..+|+|+.+++.++++++.+++++|+|| +++|......+.++++++.+.. ...+|+.||.++
T Consensus 395 ~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~-~~tviivsHd~~ 463 (490)
T PRK10938 395 ADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEG-ETQLLFVSHHAE 463 (490)
T ss_pred ccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcC-CcEEEEEecchh
Confidence 355677899999999999999999999999999 7888888888999999986642 456899999985
No 464
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.58 E-value=5e-08 Score=123.03 Aligned_cols=148 Identities=19% Similarity=0.236 Sum_probs=91.5
Q ss_pred HHhcCCEEEEEeCCCCChhcchhH-----------HHhcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHh---
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEE--- 139 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~-----------~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~--- 139 (688)
.+..|+.++|+|+|||||||++.. +.+++.++.. ...++.+.++|+.|.... -++.+++.-.
T Consensus 1308 ~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~-gTIr~NLdp~~~~ 1386 (1522)
T TIGR00957 1308 TIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFS-GSLRMNLDPFSQY 1386 (1522)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccC-ccHHHHcCcccCC
Confidence 367999999999999999998763 3445544433 122446778888886654 3666666310
Q ss_pred hc---ccccceeceeeeeccc-ccccccc----cccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHH
Q 005605 140 MD---VTIGEEVGYSIRFEDC-SSARTVL----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (688)
Q Consensus 140 ~~---~~~~~~vg~~~~~~~~-~~~~~~i----~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~ 209 (688)
.. ......+|........ ...++.+ ..+|+|+.+++.++++++.++++||||| ++.|......+.+.+++
T Consensus 1387 sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~ 1466 (1522)
T TIGR00957 1387 SDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRT 1466 (1522)
T ss_pred CHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 00 0111111211000000 0112222 2489999999999999999999999999 44544444445555444
Q ss_pred HHhcCCCcEEEEecccccH
Q 005605 210 VLKNRPDLKLVVMSATLEA 228 (688)
Q Consensus 210 i~~~~~~~~vil~SAT~~~ 228 (688)
..++..+|+++|-++.
T Consensus 1467 ---~~~~~TvI~IAHRl~t 1482 (1522)
T TIGR00957 1467 ---QFEDCTVLTIAHRLNT 1482 (1522)
T ss_pred ---HcCCCEEEEEecCHHH
Confidence 3447899999998854
No 465
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.56 E-value=2.4e-07 Score=93.15 Aligned_cols=67 Identities=18% Similarity=0.142 Sum_probs=55.8
Q ss_pred ccccccccCHHHHHHHHhccccccCC--cEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEecccccH
Q 005605 160 ARTVLKYLTDGMLLREAMTDPLLERY--KVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (688)
Q Consensus 160 ~~~~i~~lT~G~l~~~~~~~~ll~~~--~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~~ 228 (688)
.+..+..+|+|+.+++.+++.++.++ +++|+|| .+.+....+.++.+++.+.+. +..+|+.||.++.
T Consensus 131 ~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~--g~tii~itH~~~~ 201 (226)
T cd03270 131 LSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDL--GNTVLVVEHDEDT 201 (226)
T ss_pred ccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhC--CCEEEEEEeCHHH
Confidence 35567789999999999999999887 5999999 667777788888888887543 6789999999864
No 466
>PLN03130 ABC transporter C family member; Provisional
Probab=98.55 E-value=6.6e-08 Score=121.98 Aligned_cols=149 Identities=18% Similarity=0.230 Sum_probs=92.2
Q ss_pred HHhcCCEEEEEeCCCCChhcchhH-----------HHhcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhc-
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~-----------~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (688)
.|..|+.++|+|+|||||||++.. +.+++.++.. ...++.+.++|+.|.... -++.+++.-...
T Consensus 1261 ~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~-GTIreNLd~~~~~ 1339 (1622)
T PLN03130 1261 EISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFS-GTVRFNLDPFNEH 1339 (1622)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCcccc-ccHHHHhCcCCCC
Confidence 467999999999999999998763 3455554433 122456778888886554 366666631100
Q ss_pred -----ccccceeceeeeeccc-ccccccc----cccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHH
Q 005605 142 -----VTIGEEVGYSIRFEDC-SSARTVL----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (688)
Q Consensus 142 -----~~~~~~vg~~~~~~~~-~~~~~~i----~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~ 209 (688)
......++........ ...++.+ .-+|+|+.+++.++++++.++++||||| ++.|......+.+.+++
T Consensus 1340 tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~ 1419 (1622)
T PLN03130 1340 NDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIRE 1419 (1622)
T ss_pred CHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 0011111110000000 0112222 3589999999999999999999999999 45544444445555544
Q ss_pred HHhcCCCcEEEEecccccHH
Q 005605 210 VLKNRPDLKLVVMSATLEAE 229 (688)
Q Consensus 210 i~~~~~~~~vil~SAT~~~~ 229 (688)
. ..+..+|+++|-++.-
T Consensus 1420 ~---~~~~TvI~IAHRL~tI 1436 (1622)
T PLN03130 1420 E---FKSCTMLIIAHRLNTI 1436 (1622)
T ss_pred H---CCCCEEEEEeCChHHH
Confidence 3 4478999999988543
No 467
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.55 E-value=6.4e-08 Score=120.90 Aligned_cols=67 Identities=13% Similarity=0.233 Sum_probs=54.1
Q ss_pred cccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEecccccHHH
Q 005605 163 VLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEK 230 (688)
Q Consensus 163 ~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~~~~ 230 (688)
....+|+|+.+|+.++++++.++++||||| +++|......+...++++.+.. +..+|+.||.++.-.
T Consensus 576 ~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~-g~TvIiIsHrls~i~ 644 (1466)
T PTZ00265 576 NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNE-NRITIIIAHRLSTIR 644 (1466)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcC-CCEEEEEeCCHHHHH
Confidence 345699999999999999999999999999 5677777777778887765422 678999999985433
No 468
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.55 E-value=1.8e-06 Score=99.30 Aligned_cols=81 Identities=17% Similarity=0.100 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCC-C-HHHhhcccCCCCCCCC
Q 005605 262 YLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTL-P-PAMQQKIFEPAPPPSK 339 (688)
Q Consensus 262 ~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l-~-~~~r~~~~~~~~~g~~ 339 (688)
+..+.+..+...|. .+-+|||-+.+.+..+.+++.|.+. ++..-.|++.- . ..|-..+-++-+.|
T Consensus 409 K~~AI~~ei~~~~~--~grPVLIgT~SIe~SE~ls~~L~~~---------gi~h~vLNAk~~~~~~EA~IIA~AG~~G-- 475 (870)
T CHL00122 409 KWRAIADECLQMHQ--TGRPILIGTTTIEKSELLSQLLKEY---------RLPHQLLNAKPENVRRESEIVAQAGRKG-- 475 (870)
T ss_pred HHHHHHHHHHHHHh--cCCCEEEeeCCHHHHHHHHHHHHHc---------CCccceeeCCCccchhHHHHHHhcCCCC--
Confidence 34455555555554 3558999999999999999999874 56666777752 2 34434343433333
Q ss_pred CCCCCceEEEEecCccccCcccC
Q 005605 340 EGGPPGRKIVVSTNIAETSLTID 362 (688)
Q Consensus 340 ~~~~~~~kvlvaTniae~gi~i~ 362 (688)
.|.||||.|.||.||.
T Consensus 476 -------~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 476 -------SITIATNMAGRGTDII 491 (870)
T ss_pred -------cEEEeccccCCCcCee
Confidence 7999999999998884
No 469
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.55 E-value=6.4e-08 Score=111.47 Aligned_cols=148 Identities=18% Similarity=0.267 Sum_probs=91.1
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhc--
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD-- 141 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-- 141 (688)
+.+|+.++|+|++||||||++.... +++.++.. ....+.+.+++++|... ..++.+++.-...
T Consensus 363 i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf-~~Ti~~Ni~~~~~~~ 441 (576)
T TIGR02204 363 VRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLF-AASVMENIRYGRPDA 441 (576)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccc-cccHHHHHhcCCCCC
Confidence 6799999999999999999987443 12211111 11123456677666533 4467777653211
Q ss_pred -----ccccceeceeeeeccc-----ccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHH
Q 005605 142 -----VTIGEEVGYSIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (688)
Q Consensus 142 -----~~~~~~vg~~~~~~~~-----~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~ 209 (688)
......+|.....+.. ......-..+|+|+.+|+.++++++.+++++|+|| ++.|....+.+++.++.
T Consensus 442 ~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~ 521 (576)
T TIGR02204 442 TDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALET 521 (576)
T ss_pred CHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHH
Confidence 0011112211000000 00112223589999999999999999999999999 66666666666666666
Q ss_pred HHhcCCCcEEEEecccccHH
Q 005605 210 VLKNRPDLKLVVMSATLEAE 229 (688)
Q Consensus 210 i~~~~~~~~vil~SAT~~~~ 229 (688)
+. ++..+|++||..+.-
T Consensus 522 ~~---~~~t~IiitH~~~~~ 538 (576)
T TIGR02204 522 LM---KGRTTLIIAHRLATV 538 (576)
T ss_pred Hh---CCCEEEEEecchHHH
Confidence 52 367999999988443
No 470
>PLN03232 ABC transporter C family member; Provisional
Probab=98.54 E-value=6.4e-08 Score=121.86 Aligned_cols=149 Identities=18% Similarity=0.242 Sum_probs=91.5
Q ss_pred HHhcCCEEEEEeCCCCChhcchhH-----------HHhcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhc-
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~-----------~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (688)
.+..|+.++|+|+|||||||++.. +.+++.++.. ...++.+.++|+.|.... -++.+++.-...
T Consensus 1258 ~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~-gTIr~NL~~~~~~ 1336 (1495)
T PLN03232 1258 FVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFS-GTVRFNIDPFSEH 1336 (1495)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeC-ccHHHHcCCCCCC
Confidence 367999999999999999998763 3445544432 122446778888876554 366666631100
Q ss_pred -----ccccceeceeeeeccc-ccccccc----cccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHH
Q 005605 142 -----VTIGEEVGYSIRFEDC-SSARTVL----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (688)
Q Consensus 142 -----~~~~~~vg~~~~~~~~-~~~~~~i----~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~ 209 (688)
......+|........ ...++.+ .-+|+|+.+++.++++++.+++++|||| ++.|......+.+.+++
T Consensus 1337 sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~ 1416 (1495)
T PLN03232 1337 NDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIRE 1416 (1495)
T ss_pred CHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 0011111111000000 0011222 2489999999999999999999999999 45554444445555444
Q ss_pred HHhcCCCcEEEEecccccHH
Q 005605 210 VLKNRPDLKLVVMSATLEAE 229 (688)
Q Consensus 210 i~~~~~~~~vil~SAT~~~~ 229 (688)
. .++..+|+++|-++.-
T Consensus 1417 ~---~~~~TvI~IAHRl~ti 1433 (1495)
T PLN03232 1417 E---FKSCTMLVIAHRLNTI 1433 (1495)
T ss_pred H---cCCCEEEEEeCCHHHH
Confidence 3 4478999999988543
No 471
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.53 E-value=3e-08 Score=93.39 Aligned_cols=73 Identities=16% Similarity=0.212 Sum_probs=58.0
Q ss_pred ccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHchh
Q 005605 162 TVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGYF 235 (688)
Q Consensus 162 ~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~~ 235 (688)
..+..+|+|+.+|..++..+..+-+++.||| -.+++-..-.++.+++++.++. +..++++=|.++ +..++++.
T Consensus 131 ryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el-~KtiviVlHDINfAS~YsD~I 206 (252)
T COG4604 131 RYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADEL-GKTIVVVLHDINFASCYSDHI 206 (252)
T ss_pred HhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHh-CCeEEEEEecccHHHhhhhhe
Confidence 4456789999999999999999999999999 3445555666888888888876 778888889886 34566553
No 472
>PTZ00243 ABC transporter; Provisional
Probab=98.53 E-value=8.5e-08 Score=120.76 Aligned_cols=149 Identities=19% Similarity=0.235 Sum_probs=91.9
Q ss_pred HHhcCCEEEEEeCCCCChhcchhH-----------HHhcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhc-
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~-----------~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (688)
.|..|+.++|+|+|||||||++.. +++++.++.. ...++.+.++|+.|.... -++.+++.-...
T Consensus 1332 ~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~-gTIreNIdp~~~~ 1410 (1560)
T PTZ00243 1332 RIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFD-GTVRQNVDPFLEA 1410 (1560)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCcccc-ccHHHHhCcccCC
Confidence 367999999999999999998763 3455554433 223456778888886654 477777632100
Q ss_pred -----ccccceeceeeeeccc-ccccccc----cccCHHHHHHHHhccccccC-CcEEeeccc--CcChhhHHHHHHHHH
Q 005605 142 -----VTIGEEVGYSIRFEDC-SSARTVL----KYLTDGMLLREAMTDPLLER-YKVIVLDEA--HERTLATDVLFGLLK 208 (688)
Q Consensus 142 -----~~~~~~vg~~~~~~~~-~~~~~~i----~~lT~G~l~~~~~~~~ll~~-~~~lIlDEa--her~~~~d~ll~~l~ 208 (688)
......+|........ ...++.+ .-+|+|+.+++.++++++.+ +++|||||+ ..|......+...++
T Consensus 1411 sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~ 1490 (1560)
T PTZ00243 1411 SSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVM 1490 (1560)
T ss_pred CHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 0111122211100000 0012222 24899999999999999985 899999994 444444444444444
Q ss_pred HHHhcCCCcEEEEecccccHH
Q 005605 209 EVLKNRPDLKLVVMSATLEAE 229 (688)
Q Consensus 209 ~i~~~~~~~~vil~SAT~~~~ 229 (688)
.. ..+..+|+++|-+..-
T Consensus 1491 ~~---~~~~TvI~IAHRl~ti 1508 (1560)
T PTZ00243 1491 SA---FSAYTVITIAHRLHTV 1508 (1560)
T ss_pred HH---CCCCEEEEEeccHHHH
Confidence 43 3467999999988543
No 473
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.52 E-value=9.7e-08 Score=120.10 Aligned_cols=148 Identities=22% Similarity=0.311 Sum_probs=92.4
Q ss_pred HHhcCCEEEEEeCCCCChhcchhH----------HHhcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHh----
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQ----------FVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEE---- 139 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~----------~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~---- 139 (688)
.|..|+.++|+|+|||||||++.. +++++.++.. ...++.+.++|+.|.... -++.+++.-.
T Consensus 1241 ~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~-GTIR~NLdp~~~~t 1319 (1490)
T TIGR01271 1241 SVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFS-GTFRKNLDPYEQWS 1319 (1490)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEEEeCCCccCc-cCHHHHhCcccCCC
Confidence 367999999999999999998763 2234433332 123456788888887665 3677766211
Q ss_pred --hcccccceeceeeeeccc-cccccccc----ccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHH
Q 005605 140 --MDVTIGEEVGYSIRFEDC-SSARTVLK----YLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (688)
Q Consensus 140 --~~~~~~~~vg~~~~~~~~-~~~~~~i~----~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i 210 (688)
.-......+|........ ...++.+. -+|+|+.+++.++++++.++++||||| ++.|......+...++.
T Consensus 1320 deei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~- 1398 (1490)
T TIGR01271 1320 DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQ- 1398 (1490)
T ss_pred HHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHH-
Confidence 001111222211100010 01122222 489999999999999999999999999 45544444445555544
Q ss_pred HhcCCCcEEEEecccccH
Q 005605 211 LKNRPDLKLVVMSATLEA 228 (688)
Q Consensus 211 ~~~~~~~~vil~SAT~~~ 228 (688)
..++..+|+++|-++.
T Consensus 1399 --~~~~~TvI~IaHRl~t 1414 (1490)
T TIGR01271 1399 --SFSNCTVILSEHRVEA 1414 (1490)
T ss_pred --HcCCCEEEEEecCHHH
Confidence 3457899999998754
No 474
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.52 E-value=1.1e-07 Score=111.91 Aligned_cols=141 Identities=25% Similarity=0.336 Sum_probs=87.9
Q ss_pred HHhcCCEEEEEeCCCCChhcchhH-----------HHhcCccCCCc---cccCceEEEEcCCchhhhccHHHHHHHhhcc
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIETP---DRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~-----------~ll~~~~~~~~---~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (688)
.+..|+.++++||+||||||.+-+ +.+|+.++.+- ..++.+.++-+.|. +..-++.++++-....
T Consensus 1012 ~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~-LF~~TIrENI~YG~~~ 1090 (1228)
T KOG0055|consen 1012 SIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPV-LFNGTIRENIAYGSEE 1090 (1228)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCch-hhcccHHHHHhccCCC
Confidence 468999999999999999997652 23444444331 12344555555554 4556888888654111
Q ss_pred -ccc-----------------ceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecccC--cChhhHHH
Q 005605 143 -TIG-----------------EEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAH--ERTLATDV 202 (688)
Q Consensus 143 -~~~-----------------~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEah--er~~~~d~ 202 (688)
... .--||..+. ..+=..+|+|+.||++++++++.+|++|+||||- +|+.....
T Consensus 1091 vs~~eIi~Aak~ANaH~FI~sLP~GyDT~v------GerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErv 1164 (1228)
T KOG0055|consen 1091 VSEEEIIEAAKLANAHNFISSLPQGYDTRV------GERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERV 1164 (1228)
T ss_pred CCHHHHHHHHHHhhhHHHHhcCcCcccCcc------CcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHH
Confidence 000 011222111 1122358999999999999999999999999964 33333333
Q ss_pred HHHHHHHHHhcCCCcEEEEeccccc
Q 005605 203 LFGLLKEVLKNRPDLKLVVMSATLE 227 (688)
Q Consensus 203 ll~~l~~i~~~~~~~~vil~SAT~~ 227 (688)
+.+.|.+. +.++.+|++.|-+.
T Consensus 1165 VQeALd~a---~~gRT~IvIAHRLS 1186 (1228)
T KOG0055|consen 1165 VQEALDRA---MEGRTTIVIAHRLS 1186 (1228)
T ss_pred HHHHHHHh---hcCCcEEEEecchh
Confidence 44444444 34678888888764
No 475
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=9.3e-08 Score=103.07 Aligned_cols=146 Identities=18% Similarity=0.286 Sum_probs=90.8
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHH----------HhcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhc--
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQF----------VLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD-- 141 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~----------ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-- 141 (688)
.|..|+-|+|+|++||||||.+... ++++.++.. ...++.+.++| |...+-.-++..++.-...
T Consensus 374 ~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VP-Qd~~LFndTIl~NI~YGn~sa 452 (591)
T KOG0057|consen 374 TIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVP-QDSVLFNDTILYNIKYGNPSA 452 (591)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeC-CcccccchhHHHHhhcCCCCc
Confidence 4678999999999999999988743 344443332 11233444555 4444555566666632110
Q ss_pred -----cccccee-----------ceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecccCcChhhHHHHHH
Q 005605 142 -----VTIGEEV-----------GYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFG 205 (688)
Q Consensus 142 -----~~~~~~v-----------g~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ 205 (688)
.+..... ||... ...+=..+|+|+.|++.++++++.++.++++|||- ..++.+--.+
T Consensus 453 s~eeV~e~~k~a~~hd~i~~l~~GY~T~------VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaT-S~LD~~TE~~ 525 (591)
T KOG0057|consen 453 SDEEVVEACKRAGLHDVISRLPDGYQTL------VGERGLMLSGGEKQRVSLARAFLKDAPILLLDEAT-SALDSETERE 525 (591)
T ss_pred CHHHHHHHHHHcCcHHHHHhccccchhh------HhhcccccccchHHHHHHHHHHhcCCCeEEecCcc-cccchhhHHH
Confidence 0011111 23211 11222458999999999999999999999999964 2345544455
Q ss_pred HHHHHHhcCCCcEEEEecccccHHH
Q 005605 206 LLKEVLKNRPDLKLVVMSATLEAEK 230 (688)
Q Consensus 206 ~l~~i~~~~~~~~vil~SAT~~~~~ 230 (688)
+++.+.....++++|++-|.++.-.
T Consensus 526 i~~~i~~~~~~rTvI~IvH~l~ll~ 550 (591)
T KOG0057|consen 526 ILDMIMDVMSGRTVIMIVHRLDLLK 550 (591)
T ss_pred HHHHHHHhcCCCeEEEEEecchhHh
Confidence 5555555455788999888876443
No 476
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.51 E-value=3.2e-07 Score=106.48 Aligned_cols=68 Identities=24% Similarity=0.329 Sum_probs=56.0
Q ss_pred cccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHc
Q 005605 161 RTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 161 ~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~ 233 (688)
+..+..+|+|+.+|+.+++.++.+++++|||| +|+|......+..+++.+ ...+|++||... ...+++
T Consensus 151 ~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~-----~~tvlivsHd~~~l~~~~d 221 (635)
T PRK11147 151 DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF-----QGSIIFISHDRSFIRNMAT 221 (635)
T ss_pred CCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC-----CCEEEEEeCCHHHHHHhcC
Confidence 45677899999999999999999999999999 888888888888887765 247899999874 344443
No 477
>PLN03140 ABC transporter G family member; Provisional
Probab=98.50 E-value=2.3e-07 Score=115.53 Aligned_cols=144 Identities=14% Similarity=0.153 Sum_probs=97.7
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHh-------------cCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhccc-
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVL-------------EGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT- 143 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll-------------~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~- 143 (688)
+..|+.++|.||+||||||++..+.- ++.+.......+.+.++++++......++.+.+.......
T Consensus 903 i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~ 982 (1470)
T PLN03140 903 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRL 982 (1470)
T ss_pred EECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCC
Confidence 56899999999999999999874221 1111100011223566777766666678877774321110
Q ss_pred ---------------ccceeceeeeeccccccccc-----ccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHH
Q 005605 144 ---------------IGEEVGYSIRFEDCSSARTV-----LKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (688)
Q Consensus 144 ---------------~~~~vg~~~~~~~~~~~~~~-----i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d 201 (688)
+...+|.. ...++. +..+|+|+.+|+.++..++.+++++++|| .++|.....
T Consensus 983 ~~~~~~~~~~~~v~~vl~~lgL~------~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~ 1056 (1470)
T PLN03140 983 PKEVSKEEKMMFVDEVMELVELD------NLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1056 (1470)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCh------hHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Confidence 11111211 011222 35799999999999999999999999999 788888888
Q ss_pred HHHHHHHHHHhcCCCcEEEEecccccHH
Q 005605 202 VLFGLLKEVLKNRPDLKLVVMSATLEAE 229 (688)
Q Consensus 202 ~ll~~l~~i~~~~~~~~vil~SAT~~~~ 229 (688)
.++++++++.+. +..+|+.+|..+.+
T Consensus 1057 ~v~~~L~~l~~~--g~tVI~t~Hq~~~~ 1082 (1470)
T PLN03140 1057 IVMRTVRNTVDT--GRTVVCTIHQPSID 1082 (1470)
T ss_pred HHHHHHHHHHHC--CCEEEEEeCCCCHH
Confidence 899999998654 67899999998643
No 478
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.50 E-value=1.7e-07 Score=100.05 Aligned_cols=149 Identities=21% Similarity=0.238 Sum_probs=94.1
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhcc
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (688)
.+..|+.+.|+||+||||||+....+ +|+.++.. ....+.+++.|+.-. +..-+++++++..-..
T Consensus 358 ~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVe-LF~GTIaeNIaRf~~~ 436 (580)
T COG4618 358 ALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVE-LFDGTIAENIARFGEE 436 (580)
T ss_pred EecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccce-ecCCcHHHHHHhcccc
Confidence 36789999999999999999987433 33332221 222345566665433 2345778887653311
Q ss_pred -------------cccc-----eeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHH
Q 005605 143 -------------TIGE-----EVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (688)
Q Consensus 143 -------------~~~~-----~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ 202 (688)
.+.+ --||...... .=.-+|+|+.+|+.+++++..+|.++|||| +++|..-...
T Consensus 437 ~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~------~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~A 510 (580)
T COG4618 437 ADPEKVIEAARLAGVHELILRLPQGYDTRIGE------GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAA 510 (580)
T ss_pred CCHHHHHHHHHHcChHHHHHhCcCCccCccCC------CCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHH
Confidence 0111 1234322111 112489999999999999999999999999 5655554545
Q ss_pred HHHHHHHHHhcCCCcEEEEecccccHHHHHch
Q 005605 203 LFGLLKEVLKNRPDLKLVVMSATLEAEKFQGY 234 (688)
Q Consensus 203 ll~~l~~i~~~~~~~~vil~SAT~~~~~~~~~ 234 (688)
+...+..+.++ +..+|+++|-...-.-.++
T Consensus 511 L~~Ai~~~k~r--G~~vvviaHRPs~L~~~Dk 540 (580)
T COG4618 511 LAAAILAAKAR--GGTVVVIAHRPSALASVDK 540 (580)
T ss_pred HHHHHHHHHHc--CCEEEEEecCHHHHhhcce
Confidence 66666665444 7788999987755444443
No 479
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.49 E-value=1.5e-07 Score=110.58 Aligned_cols=148 Identities=18% Similarity=0.253 Sum_probs=91.3
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH-----------hcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhc-c
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD-V 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-~ 142 (688)
+..|+.++|+|++||||||++.... +++.++.. ...++.+.++++++... ..++.+++.-... .
T Consensus 480 i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf-~~ti~eNi~~~~~~~ 558 (694)
T TIGR01846 480 IKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLF-SRSIRDNIALCNPGA 558 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeeh-hhhHHHHHhcCCCCC
Confidence 5789999999999999999887432 23322221 11123455666666544 3577777753210 0
Q ss_pred ------cccceeceeeeeccc-----ccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHH
Q 005605 143 ------TIGEEVGYSIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (688)
Q Consensus 143 ------~~~~~vg~~~~~~~~-----~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~ 209 (688)
.....+|........ ......-..+|+|+.+|+.++++++.+++++|+|| ++.|......+.+.++.
T Consensus 559 ~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~ 638 (694)
T TIGR01846 559 PFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMRE 638 (694)
T ss_pred CHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 001111111000000 00111224589999999999999999999999999 55666666667776666
Q ss_pred HHhcCCCcEEEEecccccHH
Q 005605 210 VLKNRPDLKLVVMSATLEAE 229 (688)
Q Consensus 210 i~~~~~~~~vil~SAT~~~~ 229 (688)
+ .++..+|++||-++.-
T Consensus 639 ~---~~~~t~i~itH~~~~~ 655 (694)
T TIGR01846 639 I---CRGRTVIIIAHRLSTV 655 (694)
T ss_pred H---hCCCEEEEEeCChHHH
Confidence 5 2367899999988543
No 480
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=98.48 E-value=4.4e-07 Score=87.67 Aligned_cols=145 Identities=14% Similarity=0.153 Sum_probs=75.7
Q ss_pred CChHHHHHHHHHHhc-------CCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHH
Q 005605 66 PVWQQKEEFLQVLKA-------NQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAE 138 (688)
Q Consensus 66 p~~~~q~~ii~~i~~-------g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~ 138 (688)
.+.++|.+++..+.+ +..+++.++||||||..+..++..-.. +.++++ |......+..+.+..
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-------~~l~~~---p~~~l~~Q~~~~~~~ 72 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-------KVLIVA---PNISLLEQWYDEFDD 72 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-------EEEEEE---SSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-------ceeEec---CHHHHHHHHHHHHHH
Confidence 467889999988773 689999999999999987765544321 122233 443333333333311
Q ss_pred hhccccc---ce-----e--------ceeeeecccccccccccccCHHHHHHHHhc------------cccccCCcEEee
Q 005605 139 EMDVTIG---EE-----V--------GYSIRFEDCSSARTVLKYLTDGMLLREAMT------------DPLLERYKVIVL 190 (688)
Q Consensus 139 ~~~~~~~---~~-----v--------g~~~~~~~~~~~~~~i~~lT~G~l~~~~~~------------~~ll~~~~~lIl 190 (688)
....... .. . ...............+.++|...+...... .......++||+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~ 152 (184)
T PF04851_consen 73 FGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVII 152 (184)
T ss_dssp HSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEE
T ss_pred hhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEE
Confidence 1110000 00 0 000000001122344556666666655432 113567889999
Q ss_pred cccCcChhhHHHHHHHHHHHHhcCCCcEEEEecccc
Q 005605 191 DEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATL 226 (688)
Q Consensus 191 DEaher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~ 226 (688)
||+|.-. .....-.++. .+...+|.||||.
T Consensus 153 DEaH~~~-~~~~~~~i~~-----~~~~~~l~lTATp 182 (184)
T PF04851_consen 153 DEAHHYP-SDSSYREIIE-----FKAAFILGLTATP 182 (184)
T ss_dssp ETGGCTH-HHHHHHHHHH-----SSCCEEEEEESS-
T ss_pred ehhhhcC-CHHHHHHHHc-----CCCCeEEEEEeCc
Confidence 9999633 3222222222 4477899999996
No 481
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.48 E-value=1.8e-07 Score=91.74 Aligned_cols=152 Identities=16% Similarity=0.229 Sum_probs=83.2
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhcCccCCCccc--cCceEEEEcCCc---hhhhccHHHHHH---Hhhcc---cccc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDR--RRKMMIACTQPR---RVAAMSVSRRVA---EEMDV---TIGE 146 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~--~~~~~i~~t~p~---~~~~~~v~~~v~---~~~~~---~~~~ 146 (688)
+.+|+.++|+|+|||||||++..+ .+. +.+... .....+.+.-.. -..-++..+++- ..++. .+-.
T Consensus 50 i~~Ge~vGiiG~NGaGKSTLlkli--aGi-~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~ 126 (249)
T COG1134 50 IYKGERVGIIGHNGAGKSTLLKLI--AGI-YKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDE 126 (249)
T ss_pred EeCCCEEEEECCCCCcHHHHHHHH--hCc-cCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHH
Confidence 678999999999999999998753 232 221100 000001110000 001123333331 11111 0001
Q ss_pred eeceeeeeccc-ccccccccccCHHHHHHHHhccccccCCcEEeecccC--cChhhHHHHHHHHHHHHhcCCCcEEEEec
Q 005605 147 EVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAH--ERTLATDVLFGLLKEVLKNRPDLKLVVMS 223 (688)
Q Consensus 147 ~vg~~~~~~~~-~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEah--er~~~~d~ll~~l~~i~~~~~~~~vil~S 223 (688)
.+...+.|... ...+..++..|.|+..|+..+-+...+++++|+||+= -|....+-....+.++.++ +..+|+.|
T Consensus 127 ~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~--~~tiv~VS 204 (249)
T COG1134 127 KVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK--NKTIVLVS 204 (249)
T ss_pred HHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHc--CCEEEEEE
Confidence 11111111111 1235667788999999999999889999999999942 1233333344555554443 67899999
Q ss_pred cccc-HHHHHch
Q 005605 224 ATLE-AEKFQGY 234 (688)
Q Consensus 224 AT~~-~~~~~~~ 234 (688)
|.++ +..+|++
T Consensus 205 Hd~~~I~~~Cd~ 216 (249)
T COG1134 205 HDLGAIKQYCDR 216 (249)
T ss_pred CCHHHHHHhcCe
Confidence 9985 5667654
No 482
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=98.47 E-value=3.5e-06 Score=89.27 Aligned_cols=119 Identities=16% Similarity=0.199 Sum_probs=83.7
Q ss_pred HHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCc
Q 005605 266 AIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPG 345 (688)
Q Consensus 266 ~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~ 345 (688)
++..+++.|.. .+.+||||-...-.....+-.|. --.++|.-+|.+|.++++.|.-+. .
T Consensus 531 aCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl~--------------KpfIYG~Tsq~ERm~ILqnFq~n~------~ 589 (776)
T KOG1123|consen 531 ACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKLG--------------KPFIYGPTSQNERMKILQNFQTNP------K 589 (776)
T ss_pred HHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHcC--------------CceEECCCchhHHHHHHHhcccCC------c
Confidence 45566677764 45679999866544333333332 224789999999999999998762 6
Q ss_pred eEEEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCCCC-------ceEEEccch
Q 005605 346 RKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQP-------GKCFRLYTE 418 (688)
Q Consensus 346 ~kvlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~-------G~~~~l~t~ 418 (688)
.+-|+-+-|+.+|||+|...+.|+--- .--|+-+=-||.||.=|+.. ..-|+|+++
T Consensus 590 vNTIFlSKVgDtSiDLPEAnvLIQISS-----------------H~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~ 652 (776)
T KOG1123|consen 590 VNTIFLSKVGDTSIDLPEANVLIQISS-----------------HGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSK 652 (776)
T ss_pred cceEEEeeccCccccCCcccEEEEEcc-----------------cccchHHHHHHHHHHHHHhhcCccccceeeeeeeec
Confidence 777888899999999999999986110 13466677799999988732 346677776
Q ss_pred hhhc
Q 005605 419 KSFN 422 (688)
Q Consensus 419 ~~~~ 422 (688)
+..+
T Consensus 653 DTqE 656 (776)
T KOG1123|consen 653 DTQE 656 (776)
T ss_pred chHH
Confidence 5543
No 483
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.46 E-value=2.9e-07 Score=115.00 Aligned_cols=143 Identities=17% Similarity=0.195 Sum_probs=96.9
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH--------------hcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhccc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV--------------LEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l--------------l~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (688)
+..|+.++|.|||||||||++.... +++.+.. ....+.+.++++++......++.+.+.......
T Consensus 786 i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~-~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~ 864 (1394)
T TIGR00956 786 VKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD-SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLR 864 (1394)
T ss_pred EECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC-hhhhcceeeecccccCCCCCCHHHHHHHHHHhC
Confidence 5789999999999999999886422 1111110 011234566777666566678877775321111
Q ss_pred ----------------ccceeceeeeeccccccccccc----ccCHHHHHHHHhccccccCCc-EEeecc--cCcChhhH
Q 005605 144 ----------------IGEEVGYSIRFEDCSSARTVLK----YLTDGMLLREAMTDPLLERYK-VIVLDE--AHERTLAT 200 (688)
Q Consensus 144 ----------------~~~~vg~~~~~~~~~~~~~~i~----~lT~G~l~~~~~~~~ll~~~~-~lIlDE--aher~~~~ 200 (688)
+...+|.. ...++.+. -+|+|+++|+.++..++.+++ +++||| +++|....
T Consensus 865 ~~~~~~~~~~~~~v~~~l~~l~L~------~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~ 938 (1394)
T TIGR00956 865 QPKSVSKSEKMEYVEEVIKLLEME------SYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTA 938 (1394)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCh------hhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHH
Confidence 11111111 11233333 599999999999999999996 999999 78888888
Q ss_pred HHHHHHHHHHHhcCCCcEEEEecccccHH
Q 005605 201 DVLFGLLKEVLKNRPDLKLVVMSATLEAE 229 (688)
Q Consensus 201 d~ll~~l~~i~~~~~~~~vil~SAT~~~~ 229 (688)
..+..+++++.+. +..+|+.+|.++..
T Consensus 939 ~~i~~~L~~la~~--g~tvI~t~H~~~~~ 965 (1394)
T TIGR00956 939 WSICKLMRKLADH--GQAILCTIHQPSAI 965 (1394)
T ss_pred HHHHHHHHHHHHc--CCEEEEEecCCCHH
Confidence 8899999998654 67899999998654
No 484
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.44 E-value=6.3e-07 Score=103.84 Aligned_cols=68 Identities=21% Similarity=0.235 Sum_probs=55.1
Q ss_pred cccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEeccccc-HHHHHc
Q 005605 161 RTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (688)
Q Consensus 161 ~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~-~~~~~~ 233 (688)
+..+..+|+|+.+|+.+++.++.++++|+||| +|+|......+..+++.+ +..+|++||... ...+++
T Consensus 144 ~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~-----~~tviivsHd~~~l~~~~d 214 (638)
T PRK10636 144 ERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY-----QGTLILISHDRDFLDPIVD 214 (638)
T ss_pred cCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC-----CCeEEEEeCCHHHHHHhcC
Confidence 45667899999999999999999999999999 888877777777776653 358999999984 344543
No 485
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.43 E-value=4.5e-07 Score=84.34 Aligned_cols=142 Identities=20% Similarity=0.306 Sum_probs=88.4
Q ss_pred HhcCCEEEEEeCCCCChhcchh-----------HHHhcCccCCC---ccccCceEEEEcCCchhhhccHHHHHHHh----
Q 005605 78 LKANQVIILVGETGSGKTTQIP-----------QFVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEE---- 139 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~-----------~~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~---- 139 (688)
+.+|+.++++|+|||||||+.. .+++++..+.- ....+.+.++++.|.-. .+-..++.+.
T Consensus 36 L~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts--~NPRl~iGqiLd~P 113 (267)
T COG4167 36 LREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTS--LNPRLRIGQILDFP 113 (267)
T ss_pred ecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccc--cChhhhhhhHhcch
Confidence 5789999999999999999876 22333322211 11223455677665321 1111111111
Q ss_pred -----------h---cccccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeeccc--CcChhhHHHH
Q 005605 140 -----------M---DVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEA--HERTLATDVL 203 (688)
Q Consensus 140 -----------~---~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEa--her~~~~d~l 203 (688)
+ .......||.-. ...+-.+..++.|+.+|+++++++.-+|+++|.||| .+++...-.+
T Consensus 114 L~l~T~~~~~~R~~~i~~TL~~VGL~P-----dhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl 188 (267)
T COG4167 114 LRLNTDLEPEQRRKQIFETLRMVGLLP-----DHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQL 188 (267)
T ss_pred hhhcccCChHHHHHHHHHHHHHhccCc-----cccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHH
Confidence 1 111223444221 113456678999999999999999999999999994 4444445557
Q ss_pred HHHHHHHHhcCCCcEEEEeccccc
Q 005605 204 FGLLKEVLKNRPDLKLVVMSATLE 227 (688)
Q Consensus 204 l~~l~~i~~~~~~~~vil~SAT~~ 227 (688)
+.+.-++..+. +...|.++..+-
T Consensus 189 ~NL~LeLQek~-GiSyiYV~QhlG 211 (267)
T COG4167 189 INLMLELQEKQ-GISYIYVTQHIG 211 (267)
T ss_pred HHHHHHHHHHh-CceEEEEechhh
Confidence 77777777665 788888887764
No 486
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.41 E-value=4.7e-07 Score=89.53 Aligned_cols=67 Identities=15% Similarity=0.218 Sum_probs=51.1
Q ss_pred cccccccCHHHHHH------HHhccccccCCcEEeecc--cCcChhhHH-HHHHHHHHHHhcCCCcEEEEecccccH
Q 005605 161 RTVLKYLTDGMLLR------EAMTDPLLERYKVIVLDE--AHERTLATD-VLFGLLKEVLKNRPDLKLVVMSATLEA 228 (688)
Q Consensus 161 ~~~i~~lT~G~l~~------~~~~~~ll~~~~~lIlDE--aher~~~~d-~ll~~l~~i~~~~~~~~vil~SAT~~~ 228 (688)
+..+..+|.|+.++ +.+++.++.+++++++|| ++.+....+ .+.++++++.+.. +.++|+.||..+.
T Consensus 110 ~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~-~~~iiiitH~~~~ 185 (204)
T cd03240 110 LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQK-NFQLIVITHDEEL 185 (204)
T ss_pred hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcc-CCEEEEEEecHHH
Confidence 44566799999996 567788899999999999 566666667 7778887765432 5689999998653
No 487
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.40 E-value=8.3e-08 Score=88.11 Aligned_cols=67 Identities=13% Similarity=0.185 Sum_probs=54.1
Q ss_pred ccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEeccccc
Q 005605 160 ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (688)
Q Consensus 160 ~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~ 227 (688)
..+.+.-+|+|..++..+.+.+.-.+++++||| +-++..+..-+.+++.++.+.. +.-++.++|.-+
T Consensus 127 L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q-~vAv~WiTHd~d 195 (223)
T COG4619 127 LTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQ-NVAVLWITHDKD 195 (223)
T ss_pred hcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhh-ceEEEEEecChH
Confidence 346677899999999999999999999999999 4455677777888887776532 678888999874
No 488
>PLN03073 ABC transporter F family; Provisional
Probab=98.40 E-value=6.6e-07 Score=104.26 Aligned_cols=144 Identities=17% Similarity=0.144 Sum_probs=84.8
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhcCccCCC-c--cccCceEEEEcCCchhhhccHHHH----HHHhh-c------cc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIET-P--DRRRKMMIACTQPRRVAAMSVSRR----VAEEM-D------VT 143 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~-~--~~~~~~~i~~t~p~~~~~~~v~~~----v~~~~-~------~~ 143 (688)
+..|+.++|+|+|||||||++..+.-....... . .....+.++++.+.. ..++... +.... + ..
T Consensus 532 i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~--~l~~~~~~~~~~~~~~~~~~~~~i~~ 609 (718)
T PLN03073 532 IDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVD--GLDLSSNPLLYMMRCFPGVPEQKLRA 609 (718)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccc--cCCcchhHHHHHHHhcCCCCHHHHHH
Confidence 678999999999999999998765421110000 0 011234455554311 1111111 11100 0 00
Q ss_pred ccceeceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEE
Q 005605 144 IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVV 221 (688)
Q Consensus 144 ~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil 221 (688)
+...+|.. .......+..+|+|+.+|+.+++.++.+++++|||| +|+|....+.+...+... +..+|+
T Consensus 610 ~L~~~gl~-----~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-----~gtvIi 679 (718)
T PLN03073 610 HLGSFGVT-----GNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF-----QGGVLM 679 (718)
T ss_pred HHHHCCCC-----hHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-----CCEEEE
Confidence 11111211 011245677899999999999999999999999999 777776666665555442 237999
Q ss_pred eccccc-HHHHHc
Q 005605 222 MSATLE-AEKFQG 233 (688)
Q Consensus 222 ~SAT~~-~~~~~~ 233 (688)
+||.++ ...+++
T Consensus 680 vSHd~~~i~~~~d 692 (718)
T PLN03073 680 VSHDEHLISGSVD 692 (718)
T ss_pred EECCHHHHHHhCC
Confidence 999884 344443
No 489
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.40 E-value=2.4e-07 Score=115.80 Aligned_cols=66 Identities=18% Similarity=0.299 Sum_probs=50.3
Q ss_pred ccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEecccccHHHHH
Q 005605 166 YLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQ 232 (688)
Q Consensus 166 ~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~~~~~~ 232 (688)
-+|+|+.+|+.++++++.++++||||| +.+|......+.+.+..+.. .+++.+|+++|-+..-..+
T Consensus 1358 ~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~-~~~~TvIiIaHRlsti~~a 1425 (1466)
T PTZ00265 1358 SLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKD-KADKTIITIAHRIASIKRS 1425 (1466)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhc-cCCCEEEEEechHHHHHhC
Confidence 489999999999999999999999999 45655555556666665532 2367999999988543333
No 490
>PLN03140 ABC transporter G family member; Provisional
Probab=98.38 E-value=4.4e-07 Score=113.14 Aligned_cols=147 Identities=16% Similarity=0.203 Sum_probs=93.8
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHh--------------cCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhccc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVL--------------EGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll--------------~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (688)
+..|+.++|.||+||||||++....- ++.+.......+.+.++++++.....+++.+.+.......
T Consensus 188 i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~ 267 (1470)
T PLN03140 188 IKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQ 267 (1470)
T ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhc
Confidence 46899999999999999999874321 1111101011223456666655566677877774321110
Q ss_pred -----------------------------------------------ccceeceeeeecccccccccccccCHHHHHHHH
Q 005605 144 -----------------------------------------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREA 176 (688)
Q Consensus 144 -----------------------------------------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~~~~ 176 (688)
+...+|..... +....+..+.-+|+|+++|+.
T Consensus 268 ~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~-~t~vg~~~~rglSGGerkRVs 346 (1470)
T PLN03140 268 GVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICK-DTIVGDEMIRGISGGQKKRVT 346 (1470)
T ss_pred CCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCcccc-CceeCCccccCCCcccceeee
Confidence 00011111000 000113345679999999999
Q ss_pred hccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEecccc
Q 005605 177 MTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATL 226 (688)
Q Consensus 177 ~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~ 226 (688)
++..++.+++++++|| .++|......+...++++.+.. +..+|+.+|..
T Consensus 347 ia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~-g~Tviis~Hqp 397 (1470)
T PLN03140 347 TGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLT-EATVLMSLLQP 397 (1470)
T ss_pred ehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhc-CCEEEEEecCC
Confidence 9999999999999999 7788888888888898886643 56777777764
No 491
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.37 E-value=3.7e-06 Score=96.23 Aligned_cols=161 Identities=20% Similarity=0.254 Sum_probs=106.6
Q ss_pred EEEEecccccH--HHHHchhcCCCeeeeCCcccccc------eeecCCCchhHHHHHHHHHHHHHhcCCCCCEEEecCcH
Q 005605 218 KLVVMSATLEA--EKFQGYFYGAPLMKVPGRLHPVE------IFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGE 289 (688)
Q Consensus 218 ~vil~SAT~~~--~~~~~~~~~~p~~~v~g~~~~v~------~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~ 289 (688)
++-.||.|... +.|.+. .+.+++.||.- .|+. ..|. ....+..+.+..+...|. .+-+|||.+.+.
T Consensus 363 kLsGMTGTA~te~~Ef~~i-Y~l~Vv~IPTn-kP~~R~D~~d~iy~--t~~~K~~Aii~ei~~~~~--~gqPVLVgT~SI 436 (925)
T PRK12903 363 KLSGMTGTAKTEEQEFIDI-YNMRVNVVPTN-KPVIRKDEPDSIFG--TKHAKWKAVVKEVKRVHK--KGQPILIGTAQV 436 (925)
T ss_pred hhhccCCCCHHHHHHHHHH-hCCCEEECCCC-CCeeeeeCCCcEEE--cHHHHHHHHHHHHHHHHh--cCCCEEEEeCcH
Confidence 45667777632 334433 35677777753 2322 1222 223455666666766664 355899999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCcccCCeE----
Q 005605 290 EEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIV---- 365 (688)
Q Consensus 290 ~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~---- 365 (688)
+..+.+++.|.+. ++..-.|++.-...+-..+-+.-+. -.|.||||.|.||.||.--.
T Consensus 437 e~SE~ls~~L~~~---------gi~h~vLNAk~~e~EA~IIa~AG~~---------GaVTIATNMAGRGTDI~Lg~~V~~ 498 (925)
T PRK12903 437 EDSETLHELLLEA---------NIPHTVLNAKQNAREAEIIAKAGQK---------GAITIATNMAGRGTDIKLSKEVLE 498 (925)
T ss_pred HHHHHHHHHHHHC---------CCCceeecccchhhHHHHHHhCCCC---------CeEEEecccccCCcCccCchhHHH
Confidence 9999999999874 5666667765443343333333333 37999999999999997322
Q ss_pred ----EEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCC-CCceEEEccchhh
Q 005605 366 ----YVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKS 420 (688)
Q Consensus 366 ----~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~ 420 (688)
|||-+.. |-|.--=.|-.|||||. .||.+-.+.+-++
T Consensus 499 ~GGLhVIgTer------------------heSrRIDnQLrGRaGRQGDpGss~f~lSLeD 540 (925)
T PRK12903 499 LGGLYVLGTDK------------------AESRRIDNQLRGRSGRQGDVGESRFFISLDD 540 (925)
T ss_pred cCCcEEEeccc------------------CchHHHHHHHhcccccCCCCCcceEEEecch
Confidence 8888777 66665566999999999 8998766665443
No 492
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.36 E-value=3e-06 Score=90.85 Aligned_cols=165 Identities=18% Similarity=0.175 Sum_probs=119.9
Q ss_pred cEEEEecccccHHHHHchhcC--CCeeeeCCcccccceeecCCCchhHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHH
Q 005605 217 LKLVVMSATLEAEKFQGYFYG--APLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIED 294 (688)
Q Consensus 217 ~~vil~SAT~~~~~~~~~~~~--~p~~~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~ 294 (688)
.|+|.+|||.....+..--+. ..++.-.|-..|. ....|...-++.++.-+..... .+.++||-.-|++-++.
T Consensus 387 ~q~i~VSATPg~~E~e~s~~~vveQiIRPTGLlDP~---ievRp~~~QvdDL~~EI~~r~~--~~eRvLVTtLTKkmAEd 461 (663)
T COG0556 387 PQTIYVSATPGDYELEQSGGNVVEQIIRPTGLLDPE---IEVRPTKGQVDDLLSEIRKRVA--KNERVLVTTLTKKMAED 461 (663)
T ss_pred CCEEEEECCCChHHHHhccCceeEEeecCCCCCCCc---eeeecCCCcHHHHHHHHHHHHh--cCCeEEEEeehHHHHHH
Confidence 589999999955444321111 1122223333331 1122333334444444443332 34689999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceEEEEecCccccCcccCCeEEEE--cCCc
Q 005605 295 ACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVI--DPGF 372 (688)
Q Consensus 295 ~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniae~gi~i~~V~~VI--d~g~ 372 (688)
+.++|.+. ++++-.+||++..-+|..++...+.| ...|||--|+.--|||+|.|..|- |.|.
T Consensus 462 LT~Yl~e~---------gikv~YlHSdidTlER~eIirdLR~G-------~~DvLVGINLLREGLDiPEVsLVAIlDADK 525 (663)
T COG0556 462 LTEYLKEL---------GIKVRYLHSDIDTLERVEIIRDLRLG-------EFDVLVGINLLREGLDLPEVSLVAILDADK 525 (663)
T ss_pred HHHHHHhc---------CceEEeeeccchHHHHHHHHHHHhcC-------CccEEEeehhhhccCCCcceeEEEEeecCc
Confidence 99999885 89999999999999999999999999 899999999999999999998875 5443
Q ss_pred ccceeecCCCCcccceeeecchhhHHhhccccCCCCCceEEEccc
Q 005605 373 AKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYT 417 (688)
Q Consensus 373 ~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t 417 (688)
.-. .-|-.|.+|=+|||.|--.|.++....
T Consensus 526 --eGF-------------LRse~SLIQtIGRAARN~~GkvIlYAD 555 (663)
T COG0556 526 --EGF-------------LRSERSLIQTIGRAARNVNGKVILYAD 555 (663)
T ss_pred --ccc-------------ccccchHHHHHHHHhhccCCeEEEEch
Confidence 111 568889999999999999999886544
No 493
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.36 E-value=5.9e-06 Score=76.40 Aligned_cols=105 Identities=16% Similarity=0.306 Sum_probs=70.1
Q ss_pred cccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEecccccHHH-HHchhcC
Q 005605 161 RTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEK-FQGYFYG 237 (688)
Q Consensus 161 ~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~~~~~-~~~~~~~ 237 (688)
+..+...|+|+.+|+-+++.+...++++.+|| -.++..-..-++++++.+.... ++.+++++|.+.+.. +++.+.
T Consensus 146 DD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l-~la~viVTHDl~VarLla~rlm- 223 (258)
T COG4107 146 DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVREL-GLAVVIVTHDLAVARLLADRLM- 223 (258)
T ss_pred cCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhc-CceEEEEechhHHHHHhhhcce-
Confidence 34456789999999999999999999999999 3344444455888888887766 889999999996544 444432
Q ss_pred CCeeeeCCc--ccccceeecCCCchhHHHHHHHHH
Q 005605 238 APLMKVPGR--LHPVEIFYTQEPERDYLEAAIRTV 270 (688)
Q Consensus 238 ~p~~~v~g~--~~~v~~~~~~~~~~~~~~~~~~~l 270 (688)
+--.|+ .....-..+..|...|...++..+
T Consensus 224 ---vmk~g~vve~GLTDrvLDDP~hPYTQLLVSsv 255 (258)
T COG4107 224 ---VMKQGQVVESGLTDRVLDDPHHPYTQLLVSSV 255 (258)
T ss_pred ---eecCCCEeccccccccccCCCCchHHHHHHHh
Confidence 111221 112333445666666655444433
No 494
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.35 E-value=6.8e-07 Score=85.46 Aligned_cols=155 Identities=17% Similarity=0.199 Sum_probs=89.1
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHHhc-----------CccCCC---ccccCceEEEEcCCchhhhccHHHHHHHhhc-c
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFVLE-----------GVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD-V 142 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~-----------~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-~ 142 (688)
+..|++++|+||||+||||++....=+ +.+... ....+...+.|++......+++.+-+...+. .
T Consensus 24 ~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~ 103 (259)
T COG4559 24 LRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPH 103 (259)
T ss_pred ccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhccccc
Confidence 568999999999999999998753211 111110 0001122345554444444455444432210 0
Q ss_pred cccceece--------eeeecccccccccccccCHHHHHHHHhcccc--c----cCCcEEeecc--cCcChhhHHHHHHH
Q 005605 143 TIGEEVGY--------SIRFEDCSSARTVLKYLTDGMLLREAMTDPL--L----ERYKVIVLDE--AHERTLATDVLFGL 206 (688)
Q Consensus 143 ~~~~~vg~--------~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~l--l----~~~~~lIlDE--aher~~~~d~ll~~ 206 (688)
..+..-+- ..+.+-.......+..+|+|+.+|+-+++.+ + .+.+++.||| +-+|.......+.+
T Consensus 104 ~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~l 183 (259)
T COG4559 104 RSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRL 183 (259)
T ss_pred ccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHH
Confidence 00000000 0000000112345567999999999988876 2 3346999999 55566667778889
Q ss_pred HHHHHhcCCCcEEEEecccccH-HHHHch
Q 005605 207 LKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (688)
Q Consensus 207 l~~i~~~~~~~~vil~SAT~~~-~~~~~~ 234 (688)
.+++.+. +.-++.+=|++|. ..|++.
T Consensus 184 aR~la~~--g~~V~~VLHDLNLAA~YaDr 210 (259)
T COG4559 184 ARQLARE--GGAVLAVLHDLNLAAQYADR 210 (259)
T ss_pred HHHHHhc--CCcEEEEEccchHHHHhhhe
Confidence 9998877 4678888888874 456654
No 495
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.35 E-value=4.8e-07 Score=98.05 Aligned_cols=154 Identities=18% Similarity=0.259 Sum_probs=87.4
Q ss_pred HHhcCCEEEEEeCCCCChhcchhH----HHhcCccCCCcccc--CceEEEEcCCchhhhccHHHHHHHh-----------
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQ----FVLEGVDIETPDRR--RKMMIACTQPRRVAAMSVSRRVAEE----------- 139 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~----~ll~~~~~~~~~~~--~~~~i~~t~p~~~~~~~v~~~v~~~----------- 139 (688)
.+.+|++++|+||||||||.++.- +-..+..+..+... ..+..+|++|--..- ++.+++--.
T Consensus 457 ~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~~~~~~ 535 (659)
T KOG0060|consen 457 EVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLG-TLRDQVIYPLKAEDMDSKSA 535 (659)
T ss_pred EecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCcccc-chhheeeccCccccccccCC
Confidence 367899999999999999999872 22222213322222 456778888732211 111111000
Q ss_pred ---hcccccceecee---eeecccc--cccccccccCHHHHHHHHhccccccCCcEEeecccCcChhhHHHHHHHHHHHH
Q 005605 140 ---MDVTIGEEVGYS---IRFEDCS--SARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVL 211 (688)
Q Consensus 140 ---~~~~~~~~vg~~---~~~~~~~--~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEaher~~~~d~ll~~l~~i~ 211 (688)
.-....+.++.. .+.++.. ....--.++|+|+++|+..++-+..+|++.||||+- ..+..| +.+.+-+..
T Consensus 536 ~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~T-SAv~~d-vE~~~Yr~~ 613 (659)
T KOG0060|consen 536 SDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECT-SAVTED-VEGALYRKC 613 (659)
T ss_pred CHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechh-hhccHH-HHHHHHHHH
Confidence 000011111110 0111111 111223479999999999999999999999999953 122333 333333333
Q ss_pred hcCCCcEEEEecccccHHHHHch
Q 005605 212 KNRPDLKLVVMSATLEAEKFQGY 234 (688)
Q Consensus 212 ~~~~~~~vil~SAT~~~~~~~~~ 234 (688)
++. ++..|-+||--...+|-+|
T Consensus 614 r~~-giT~iSVgHRkSL~kfHd~ 635 (659)
T KOG0060|consen 614 REM-GITFISVGHRKSLWKFHDY 635 (659)
T ss_pred HHc-CCeEEEeccHHHHHhhhhE
Confidence 333 8899999998877777665
No 496
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.33 E-value=1.2e-06 Score=97.76 Aligned_cols=143 Identities=19% Similarity=0.226 Sum_probs=85.9
Q ss_pred HHhcCCEEEEEeCCCCChhcchhHHHhcCccCCC-ccccCceEE-EEcCCc-hh-hhccHHHHHHHhhcc----ccccee
Q 005605 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIET-PDRRRKMMI-ACTQPR-RV-AAMSVSRRVAEEMDV----TIGEEV 148 (688)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~-~~~~~~~~i-~~t~p~-~~-~~~~v~~~v~~~~~~----~~~~~v 148 (688)
.+..|+-++|+||||+||||++..++-....... ......+.+ .+.|.. .. ...++.+.+...... .+....
T Consensus 344 ~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L 423 (530)
T COG0488 344 RIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYL 423 (530)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHH
Confidence 4678999999999999999999876432221111 011112212 223332 11 333666666654421 111111
Q ss_pred ceeeeecccccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHHHHHHHHHhcCCCcEEEEecccc
Q 005605 149 GYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATL 226 (688)
Q Consensus 149 g~~~~~~~~~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~~l~~i~~~~~~~~vil~SAT~ 226 (688)
| ...|.. ....+.+..+|+|+..|+.++.-++.++.+||||| -|+|....+.+...|. .+ +-.+|++||.-
T Consensus 424 ~-~f~F~~-~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~----~f-~Gtvl~VSHDr 496 (530)
T COG0488 424 G-RFGFTG-EDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALL----DF-EGTVLLVSHDR 496 (530)
T ss_pred H-HcCCCh-HHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHH----hC-CCeEEEEeCCH
Confidence 1 000111 12356788899999999999999999999999999 5665444444444443 34 55899999985
No 497
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.32 E-value=2.9e-05 Score=88.52 Aligned_cols=293 Identities=18% Similarity=0.166 Sum_probs=152.9
Q ss_pred hcCCEEEEEeCCCCChhcchhHHHhcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhcccccceeceeeeecccc
Q 005605 79 KANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCS 158 (688)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~ 158 (688)
....+.+|.+|.||||||++..++-+...... . .++...-|+..+.+++.++...-- ...+-|....+...
T Consensus 47 ~~~~V~vVRSpMGTGKTtaLi~wLk~~l~~~~-----~-~VLvVShRrSL~~sL~~rf~~~~l---~gFv~Y~d~~~~~i 117 (824)
T PF02399_consen 47 QKRGVLVVRSPMGTGKTTALIRWLKDALKNPD-----K-SVLVVSHRRSLTKSLAERFKKAGL---SGFVNYLDSDDYII 117 (824)
T ss_pred CCCCeEEEECCCCCCcHHHHHHHHHHhccCCC-----C-eEEEEEhHHHHHHHHHHHHhhcCC---Ccceeeeccccccc
Confidence 46678899999999999999888766532111 1 122223355555566666644310 01111111000000
Q ss_pred c--ccccccccCHHHHHHHHhccccccCCcEEeecccC-----cChh---hHHHHHHHHHHHHhcCCCcEEEEecccccH
Q 005605 159 S--ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAH-----ERTL---ATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (688)
Q Consensus 159 ~--~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDEah-----er~~---~~d~ll~~l~~i~~~~~~~~vil~SAT~~~ 228 (688)
. ...++.+ .-.-+.|+ ...++.++++|||||+- .-+- ......++++.+++. -.++|+|-||++.
T Consensus 118 ~~~~~~rLiv-qIdSL~R~--~~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~--ak~VI~~DA~ln~ 192 (824)
T PF02399_consen 118 DGRPYDRLIV-QIDSLHRL--DGSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRN--AKTVIVMDADLND 192 (824)
T ss_pred cccccCeEEE-Eehhhhhc--ccccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHh--CCeEEEecCCCCH
Confidence 0 0112211 11222222 23468889999999953 1111 112345566666665 4689999999964
Q ss_pred ---HHHHchhcCCCeeeeCCc----ccccce-eecC--------------------CCc-------------hhHHHHHH
Q 005605 229 ---EKFQGYFYGAPLMKVPGR----LHPVEI-FYTQ--------------------EPE-------------RDYLEAAI 267 (688)
Q Consensus 229 ---~~~~~~~~~~p~~~v~g~----~~~v~~-~~~~--------------------~~~-------------~~~~~~~~ 267 (688)
+.++..-++.++-.+.+. -|.-.. .++. .+. .+....-.
T Consensus 193 ~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~ 272 (824)
T PF02399_consen 193 QTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFF 272 (824)
T ss_pred HHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHH
Confidence 334443333333322211 010000 0000 000 00000111
Q ss_pred HHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHhhcccCCCCCCCCCCCCCceE
Q 005605 268 RTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRK 347 (688)
Q Consensus 268 ~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~k 347 (688)
..+..-+ ..+.+|-||.+|..-.+.+++..... .-.|+.+.|.-+..+- +... +.+
T Consensus 273 ~~L~~~L--~~gknIcvfsSt~~~~~~v~~~~~~~---------~~~Vl~l~s~~~~~dv----~~W~---------~~~ 328 (824)
T PF02399_consen 273 SELLARL--NAGKNICVFSSTVSFAEIVARFCARF---------TKKVLVLNSTDKLEDV----ESWK---------KYD 328 (824)
T ss_pred HHHHHHH--hCCCcEEEEeChHHHHHHHHHHHHhc---------CCeEEEEcCCCCcccc----cccc---------cee
Confidence 1222211 23457889999998888887777653 5678888887665521 2222 578
Q ss_pred EEEecCccccCcccCCeEEEEcCCcccceeecCCCCcccceeeecchhhHHhhccccCCCCCceEEEccchhhh
Q 005605 348 IVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSF 421 (688)
Q Consensus 348 vlvaTniae~gi~i~~V~~VId~g~~k~~~~~~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~~~~ 421 (688)
|++=|.+..-|++++...+=-=|+++|...+ -.+..+..|..||.=.......|-.++....
T Consensus 329 VviYT~~itvG~Sf~~~HF~~~f~yvk~~~~------------gpd~~s~~Q~lgRvR~l~~~ei~v~~d~~~~ 390 (824)
T PF02399_consen 329 VVIYTPVITVGLSFEEKHFDSMFAYVKPMSY------------GPDMVSVYQMLGRVRSLLDNEIYVYIDASGA 390 (824)
T ss_pred EEEEeceEEEEeccchhhceEEEEEecCCCC------------CCcHHHHHHHHHHHHhhccCeEEEEEecccc
Confidence 9999999999999976532111222222222 2355568899999977666666666655443
No 498
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.32 E-value=1e-06 Score=100.98 Aligned_cols=146 Identities=20% Similarity=0.279 Sum_probs=96.1
Q ss_pred HhcCCEEEEEeCCCCChhcchhHHH--------------hcCccCCCccccCceEEEEcCCchhhhccHHHHHHHhhccc
Q 005605 78 LKANQVIILVGETGSGKTTQIPQFV--------------LEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l--------------l~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (688)
+..|+.++|.||.||||||++.... +++.........+....+.+........+|.+.+.-....+
T Consensus 53 ~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lr 132 (613)
T KOG0061|consen 53 AKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLR 132 (613)
T ss_pred EecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhc
Confidence 5789999999999999999986322 22211111111222344555555567788877773222111
Q ss_pred c----------------cceeceeeeecccccccccc-----cccCHHHHHHHHhccccccCCcEEeecc--cCcChhhH
Q 005605 144 I----------------GEEVGYSIRFEDCSSARTVL-----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (688)
Q Consensus 144 ~----------------~~~vg~~~~~~~~~~~~~~i-----~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (688)
. ....|.. ...++.+ .-+|+|+..|+.++-.++.+|.++++|| .++|+...
T Consensus 133 lp~~~~~~~k~~~V~~vi~~LgL~------~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA 206 (613)
T KOG0061|consen 133 LPSSLSKEEKRERVEEVISELGLE------KCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSA 206 (613)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCh------hhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhH
Confidence 1 1112211 1122223 4589999999999999999999999999 78888888
Q ss_pred HHHHHHHHHHHhcCCCcEEEEecccccHHHH
Q 005605 201 DVLFGLLKEVLKNRPDLKLVVMSATLEAEKF 231 (688)
Q Consensus 201 d~ll~~l~~i~~~~~~~~vil~SAT~~~~~~ 231 (688)
-.+..+|+++.+. ++.||+.=|-...+.|
T Consensus 207 ~~vv~~Lk~lA~~--grtVi~tIHQPss~lf 235 (613)
T KOG0061|consen 207 LQVVQLLKRLARS--GRTVICTIHQPSSELF 235 (613)
T ss_pred HHHHHHHHHHHhC--CCEEEEEEeCCcHHHH
Confidence 8999999999877 6667766666554444
No 499
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.31 E-value=8.4e-07 Score=83.65 Aligned_cols=154 Identities=18% Similarity=0.270 Sum_probs=97.1
Q ss_pred HhcCCEEEEEeCCCCChhcchh-----------HHHhcC-ccCCCcc----ccCceEEEEcCCchhhhccHHHHHHHhh-
Q 005605 78 LKANQVIILVGETGSGKTTQIP-----------QFVLEG-VDIETPD----RRRKMMIACTQPRRVAAMSVSRRVAEEM- 140 (688)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~-----------~~ll~~-~~~~~~~----~~~~~~i~~t~p~~~~~~~v~~~v~~~~- 140 (688)
+..|+.-+++||||+||||++- ..++++ .++.+.. .+.+++--++.|+.....++.+++.-..
T Consensus 28 v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~ 107 (249)
T COG4674 28 VDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALN 107 (249)
T ss_pred ecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhc
Confidence 5679999999999999999874 233333 3332211 1223333467788888888888874322
Q ss_pred -cccccceeceeeeeccc-------------ccccccccccCHHHHHHHHhccccccCCcEEeecc--cCcChhhHHHHH
Q 005605 141 -DVTIGEEVGYSIRFEDC-------------SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (688)
Q Consensus 141 -~~~~~~~vg~~~~~~~~-------------~~~~~~i~~lT~G~l~~~~~~~~ll~~~~~lIlDE--aher~~~~d~ll 204 (688)
...+.....+..+.+.. ...+..--.+|.|+.+.+.+..-+..+|+++.+|| |.+-...+...-
T Consensus 108 ~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~ta 187 (249)
T COG4674 108 RDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTA 187 (249)
T ss_pred CCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHH
Confidence 22222222111111110 00112223689999999999998899999999999 665555566677
Q ss_pred HHHHHHHhcCCCcEEEEeccccc-HHHHHch
Q 005605 205 GLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (688)
Q Consensus 205 ~~l~~i~~~~~~~~vil~SAT~~-~~~~~~~ 234 (688)
++++.+... ..++++-|+|. +..++++
T Consensus 188 eLl~~la~~---hsilVVEHDM~Fvr~~A~~ 215 (249)
T COG4674 188 ELLKSLAGK---HSILVVEHDMGFVREIADK 215 (249)
T ss_pred HHHHHHhcC---ceEEEEeccHHHHHHhhhe
Confidence 777777554 47899999995 4556644
No 500
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.30 E-value=4.1e-05 Score=88.23 Aligned_cols=80 Identities=15% Similarity=0.113 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCC-CC-HHHhhcccCCCCCCCCC
Q 005605 263 LEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYST-LP-PAMQQKIFEPAPPPSKE 340 (688)
Q Consensus 263 ~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~-l~-~~~r~~~~~~~~~g~~~ 340 (688)
..+.+..+...|. .+-+|||-+.+.+.-+.+++.|.+. ++..-.|++. .. ..|-..+-+.-..
T Consensus 425 ~~Ai~~ei~~~~~--~GrPVLIgT~SVe~SE~ls~~L~~~---------gi~h~vLNAk~~~~~~EA~IIa~AG~~---- 489 (939)
T PRK12902 425 WRAVANETAEMHK--QGRPVLVGTTSVEKSELLSALLQEQ---------GIPHNLLNAKPENVEREAEIVAQAGRK---- 489 (939)
T ss_pred HHHHHHHHHHHHh--CCCCEEEeeCCHHHHHHHHHHHHHc---------CCchheeeCCCcchHhHHHHHHhcCCC----
Confidence 3344555555554 3568999999999999999999874 5555556665 22 2333333333333
Q ss_pred CCCCceEEEEecCccccCcccC
Q 005605 341 GGPPGRKIVVSTNIAETSLTID 362 (688)
Q Consensus 341 ~~~~~~kvlvaTniae~gi~i~ 362 (688)
-.|-||||.|.||-||.
T Consensus 490 -----GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 490 -----GAVTIATNMAGRGTDII 506 (939)
T ss_pred -----CcEEEeccCCCCCcCEe
Confidence 37999999999998874
Done!