Query 005605
Match_columns 688
No_of_seqs 326 out of 3763
Neff 8.8
Searched_HMMs 29240
Date Tue Mar 26 19:06:40 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005605.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2107-2111//hhsearch_pdb/005605hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 1.0 1 1 890.8 56.6 638 40-688 68-717 (773)
2 2va8_A SSO2462, SKI2-type heli 1.0 1 1 475.5 28.9 559 44-631 8-655 (715)
3 2p6r_A Afuhel308 helicase; pro 1.0 1 1 466.4 27.7 525 45-602 2-607 (702)
4 2zj8_A DNA helicase, putative 1.0 1 1 442.5 26.6 553 45-632 2-645 (720)
5 3i4u_A ATP-dependent RNA helic 1.0 1 1 375.0 23.0 232 453-688 5-238 (270)
6 2db3_A ATP-dependent RNA helic 1.0 1 1 359.9 22.6 344 36-420 48-408 (434)
7 3eiq_A Eukaryotic initiation f 1.0 1 1 347.4 18.5 347 38-423 34-391 (414)
8 2j0s_A ATP-dependent RNA helic 1.0 1 1 341.0 21.1 344 40-423 33-387 (410)
9 3l9o_A ATP-dependent RNA helic 1.0 1 1 340.7 14.2 346 44-420 162-598 (1108)
10 3fmp_B ATP-dependent RNA helic 1.0 1 1 340.0 14.8 346 42-421 90-448 (479)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=1.00 E-value=1 Score=890.80 Aligned_cols=638 Identities=65% Similarity=1.065 Sum_probs=583.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHCCHHHHHHCCCCCCCCCCCCCEEE
Q ss_conf 85578878999993799999983389974889999999751999999938988710305277753966788011374599
Q 005605 40 NSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMI 119 (688)
Q Consensus 40 ~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGsGKTt~~~~~ll~~~~~~~~~~~~~~~i 119 (688)
+.+.++|+++++++++.+.++.++.+|++.++.+++..+..|++++++|+||||||+++|+++++.. ... ..+..+
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~-~~~---~~g~~i 143 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDE-MPH---LENTQV 143 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHH-CGG---GGTCEE
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHC-CCC---CCCCEE
T ss_conf 6778882026989899999998661895999999999996798399988998899999999999740-015---899658
Q ss_pred EECCCCHHHHCCHHHHHHHHHCCCCCCEECEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCHHH
Q ss_conf 97077311103299999976022223410002421245553654331497999999911422358807864055758122
Q 005605 120 ACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLA 199 (688)
Q Consensus 120 ~~t~p~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~~T~g~ll~~l~~~~~l~~~~~iIlDEaher~~~ 199 (688)
++++|++..+.+++++++..++..++..+|+.++++......+.|.++|+|++++.+..+..+.++++||+||+|+|+++
T Consensus 144 lvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld 223 (773)
T 2xau_A 144 ACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLA 223 (773)
T ss_dssp EEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHH
T ss_pred EECCCHHHHHHHHHHHHHHHHCCCHHHEECCEECCCCCCCCCCCEEEECHHHHHHHHHHCCCCCCCCEEEECCCCCCCCC
T ss_conf 86185699999999999998488453256622244545588987799899999999742844357788995470103645
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHCHHCCCCEEEECCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 78999999999851999489994365308999805359992540786555310002798012899999999999742999
Q 005605 200 TDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPS 279 (688)
Q Consensus 200 ~d~ll~~l~~l~~~~~~~~~il~SAT~~~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 279 (688)
.+.++.+++.+...+++.++++||||++.+.+++||.+.+++.++++.+|++++|...+..++....+..+..++....+
T Consensus 224 ~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 303 (773)
T 2xau_A 224 TDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEA 303 (773)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSCCEEECCCCCCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 58999999999874878629999433568999998468985453686555388980688245999999999999972689
Q ss_pred CCEEEECCCHHHHHHHHHHHHHHHHHC--CCCCCCEEEEEECCCCCHHHHHCCCCCCC-----CCCCCCCCCCEEEEEEC
Q ss_conf 987884386999999999999877522--99999949999369999887600028788-----88888999942899944
Q 005605 280 GDILVFLTGEEEIEDACRKITKEITNM--GDQVGPVKVVPLYSTLPPAMQQKIFEPAP-----PPSKEGGPPGRKIVVST 352 (688)
Q Consensus 280 g~iLVFl~~~~~i~~l~~~L~~~~~~~--~~~~~~~~v~~lhs~~~~~~r~~~~~~~~-----~g~~~~~~~~~~viiaT 352 (688)
|++|||++++.+++.+++.|......+ .....++.+.++||++++++|..+++.|+ +| .++|||||
T Consensus 304 g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g-------~~kVlVAT 376 (773)
T 2xau_A 304 GDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRP-------GRKVVIST 376 (773)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSC-------CEEEEEEC
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCC-------CEEEEEEC
T ss_conf 99899899899999999999998876313456797599980789999999999852643457888-------34999967
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCEEEECCHHHHHHHCCCCCCCCCCEEEECCCHHHHCCCCCCCCCCC
Q ss_conf 85334766699089984996431322477883000010033655872125669999945999026231200199999995
Q 005605 353 NIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPE 432 (688)
Q Consensus 353 ~iae~gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pe 432 (688)
|+||+|||||+|++|||+|+.|.+.||+..++..|.+.|+|.++|+||+|||||.++|.||+||++.++...+.++..||
T Consensus 377 ~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~~~~l~~~~~pE 456 (773)
T 2xau_A 377 NIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPE 456 (773)
T ss_dssp THHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHHHHHTSCSSCCCG
T ss_pred CHHHHCCCCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEEEECHHHHCCCCCCCCCCC
T ss_conf 67984767687379994797221222566683203300179999986534447899987999963788401230168975
Q ss_pred CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHCCCC
Q ss_conf 33469079999999829998766568999959999999999988277459887582100000488884435565306787
Q 005605 433 ILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKY 512 (688)
Q Consensus 433 i~r~~l~~~~L~lk~~~~~~~~~~~~l~~P~~~~i~~a~~~L~~lgald~~~~lT~~G~~~~~lpl~p~~~~~l~~~~~~ 512 (688)
|.+.+|.+++|.++.+|+.++..|+|++||+.+++..|++.|..+||||.+|++|++|+.|+.||++|++|+||+.+..+
T Consensus 457 i~r~~L~~~~L~l~~~gi~~~~~f~~~~~p~~~~i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl~p~~~~~l~~~~~~ 536 (773)
T 2xau_A 457 ILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEF 536 (773)
T ss_dssp GGGSCCHHHHHHHHHTTCCCGGGCCCSSCCCHHHHHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSSCHHHHHHHHHGGGG
T ss_pred CCCCCHHHHHHHHHHCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHCCC
T ss_conf 33475899999999849997232435579859999999999997687655788683056424336888999999862124
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC---CC-HHHHHHHCCCHHHHHHH
Q ss_conf 884789999988239997779767899999999870899993999999999998369---97-00177404898999999
Q 005605 513 NCSNEILSISAMLSVPNCFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNN---ED-PSWCYDNFVNHRALKSA 588 (688)
Q Consensus 513 ~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~~~~~~~~~sD~l~~l~~~~~~~~~~---~~-~~~c~~~~l~~~~l~~~ 588 (688)
+|++++++|+|+|+++++|+.|...+++++.++..|.+..|||++++++|++|.... .. ..||++|+|++++|+++
T Consensus 537 ~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~~~~f~~~~~D~~~~l~~~~~~~~~~~~~~~~~~~c~~~~l~~~~l~~~ 616 (773)
T 2xau_A 537 QCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAA 616 (773)
T ss_dssp TCHHHHHHHHHHHTSCCCBCCCTTCHHHHHHHHHTTCCTTBHHHHHHHHHHHHTSHHHHHHCHHHHHHHTTBCHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHH
T ss_conf 74168999999603688551874789999999985068898599999999999870222106899999838899999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCC-EEEEECCEEEEECCCCCCCCCCCEEEE
Q ss_conf 9999999999997187656899999205999999999504232257668996-898436907998799989999978999
Q 005605 589 DNVRQQLVRIMARFNLKLCSNDFNSRDYYVNIRKAMLAGYFMQVAHLERTGQ-YLTVKDNQVVHLHPSNCLDHKPEWVIY 667 (688)
Q Consensus 589 ~~~~~qL~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~g~~~nia~~~~~~~-y~~~~~~~~v~ihpsS~l~~~~~~vvy 667 (688)
.+++.||..++.+.++...+...+.+.++..|++||++|||+|+|++.+.+. |.++.+++.++|||+|++...|+||||
T Consensus 617 ~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~g~~~~~a~~~~~~~~y~~~~~~~~~~ihp~s~l~~~~~~~v~ 696 (773)
T 2xau_A 617 DNIRSQLERLMNRYNLELNTTDYESPKYFDNIRKALASGFFMQVAKKRSGAKGYITVKDNQDVLIHPSTVLGHDAEWVIY 696 (773)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCTTSTTHHHHHHHHHHHHHTTSEEEECCC--CEEETTTCCEEEECTTCCCCTTCSEEEE
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHEEECCCCCCCEEEECCCEEEECCCCCCCCCCCEEEE
T ss_conf 99999999998742887577777732069999999998673755143467874157337977998898646799898999
Q ss_pred EEEECCCCCEEEECCCCCCCC
Q ss_conf 865024200354001138999
Q 005605 668 NEYVLTSRNFIRTVTDVRGEW 688 (688)
Q Consensus 668 ~e~~~t~k~y~r~vt~i~~eW 688 (688)
+|++.|++.|||+||+|+|+|
T Consensus 697 ~e~~~t~~~~~~~~~~i~~~~ 717 (773)
T 2xau_A 697 NEFVLTSKNYIRTVTSVRPEW 717 (773)
T ss_dssp EEEEESSSEEEEEEEECCHHH
T ss_pred EEEECCCHHHEEECCCCCHHH
T ss_conf 986202442424416079999
No 2
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=475.50 Aligned_cols=559 Identities=16% Similarity=0.131 Sum_probs=404.8
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH-HHCCCEEEEEECCCCCHHCCHHHHHHCCCCCCCCCCCCCEEEEEC
Q ss_conf 8878999993799999983389974889999999-751999999938988710305277753966788011374599970
Q 005605 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQV-LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACT 122 (688)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~-i~~g~~vii~g~TGsGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t 122 (688)
-+|+++++++++.+.++.+|+..++++|.++++. +.++++++++||||||||+++++++++.. ... +..++++
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~-~~~-----~~~il~i 81 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFL-LKN-----GGKAIYV 81 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHH-HHS-----CSEEEEE
T ss_pred CCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHH-HHC-----CCEEEEE
T ss_conf 7198769999999999867998799999999999864899489984898759999999999999-977-----9849999
Q ss_pred CCCHHHHCCHHHHHH--HHHCCCCCCEECEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCC-CCCCCEEEECCCCCCHHH
Q ss_conf 773111032999999--76022223410002421245553654331497999999911422-358807864055758122
Q 005605 123 QPRRVAAMSVSRRVA--EEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLA 199 (688)
Q Consensus 123 ~p~~~~~~~~~~~~~--~~~~~~~~~~vg~~~~~~~~~~~~~~i~~~T~g~ll~~l~~~~~-l~~~~~iIlDEaher~~~ 199 (688)
+|++..+.++++++. ...+..++..+|+....+... ..+.|.++|||.+..++..++. +.++++||+||+|+.. +
T Consensus 82 ~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~-~ 159 (715)
T 2va8_A 82 TPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDAWL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLN-D 159 (715)
T ss_dssp CSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCGGG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGG-C
T ss_pred ECCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHC-CCCCEEEECHHHHHHHHHCCHHHHHCCCEEEEECHHHCC-C
T ss_conf 08599999999999876527988999848977762013-799999985899999996785576436989995355527-8
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCC-CHHHHHCHHCCCCEEEECCCCCCCCEEECCCC--------------CHHH--
Q ss_conf 789999999998519994899943653-08999805359992540786555310002798--------------0128--
Q 005605 200 TDVLFGLLKEVLKNRPDLKLVVMSATL-EAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEP--------------ERDY-- 262 (688)
Q Consensus 200 ~d~ll~~l~~l~~~~~~~~~il~SAT~-~~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~~--------------~~~~-- 262 (688)
+.....++.+....++.++++||||+ +.+.+++||. .+.+..+++..|+..++...+ ....
T Consensus 160 -~~~~~~l~~i~~~~~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (715)
T 2va8_A 160 -PERGPVVESVTIRAKRRNLLALSATISNYKQIAKWLG-AEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHG 237 (715)
T ss_dssp -TTTHHHHHHHHHHHHTSEEEEEESCCTTHHHHHHHHT-CEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEES
T ss_pred -CCCCHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHC-CCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCHHHHCCC
T ss_conf -6622299999986536728997178799999999849-97457999988746888835876654046527604432134
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHH-CC---------------CC-----------CCCEEE
Q ss_conf 9999999999974299998788438699999999999987752-29---------------99-----------999499
Q 005605 263 LEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITN-MG---------------DQ-----------VGPVKV 315 (688)
Q Consensus 263 ~~~~~~~l~~~~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~-~~---------------~~-----------~~~~~v 315 (688)
.......+...+ ..++++|||++++++++.++..|...... .. .. .....+
T Consensus 238 ~~~~~~~~~~~~--~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v 315 (715)
T 2va8_A 238 DDAIIAYTLDSL--SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGV 315 (715)
T ss_dssp SSHHHHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTE
T ss_pred CHHHHHHHHHHH--HCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCE
T ss_conf 438999999998--669977999798899999999999987654288677899999999866345532299999996687
Q ss_pred EEECCCCCHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCEEEECCHH
Q ss_conf 99369999887600028788888889999428999448533476669908998499643132247788300001003365
Q 005605 316 VPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKA 395 (688)
Q Consensus 316 ~~lhs~~~~~~r~~~~~~~~~g~~~~~~~~~~viiaT~iae~gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~ 395 (688)
.++||++++++|..+++.|++| .++||+|||++|+|||+|++++||+. ...||+..+.. ..|.|.+
T Consensus 316 ~~~h~~l~~~~r~~v~~~f~~g-------~~~vlvaT~~l~~Gidip~~~~VI~~----~~~~d~~~~~~---~~~~s~~ 381 (715)
T 2va8_A 316 AYHHAGLSKALRDLIEEGFRQR-------KIKVIVATPTLAAGVNLPARTVIIGD----IYRFNKKIAGY---YDEIPIM 381 (715)
T ss_dssp EEECTTSCHHHHHHHHHHHHTT-------CSCEEEECGGGGGSSCCCBSEEEECC----C-----------------CHH
T ss_pred EEECCCCCHHHHHHHHHHHHCC-------CCEEEEECHHHHCCCCCCCEEEEEEC----CEECCCCCCCC---CCCCCHH
T ss_conf 8878999999999999999869-------98599978087661688854999918----75644667778---7759999
Q ss_pred HHHHHCCCCCCCC---CCEEEECCCHHH-HCCCC--CCCCCCCCCCCCCHH------HHHHHHHCCCC----CCCCC---
Q ss_conf 5872125669999---945999026231-20019--999999533469079------99999982999----87665---
Q 005605 396 SAHQRSGRAGRTQ---PGKCFRLYTEKS-FNNDL--QPQTYPEILRSNLAN------TVLTLKKLGID----DLVHF--- 456 (688)
Q Consensus 396 ~~~qR~GRaGR~~---~G~~~~l~~~~~-~~~~~--~~~~~pei~r~~l~~------~~L~lk~~~~~----~~~~~--- 456 (688)
+|.||+|||||.+ +|.||+++++.+ +...+ .....||+.+.++.. .++.+..+|.- ++..|
T Consensus 382 ~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~ 461 (715)
T 2va8_A 382 EYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYE 461 (715)
T ss_dssp HHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 99998424279988887569999678067999999997089987353378666799999999851566889999999985
Q ss_pred CCCC-CCCHHHHHHHHHHHHHCCCCCCCC---CCCHHHHHCCCCCCCHHHHHHHHHCCCC---CCHHHHHHHHHHHCC-C
Q ss_conf 6899-995999999999998827745988---7582100000488884435565306787---884789999988239-9
Q 005605 457 DFMD-PPAPETLMRALEVLNYLGALDDDG---NLTEMGEKMSEFPLDPQMSKMLVESPKY---NCSNEILSISAMLSV-P 528 (688)
Q Consensus 457 ~~l~-~P~~~~i~~a~~~L~~lgald~~~---~lT~~G~~~~~lpl~p~~~~~l~~~~~~---~c~~~~l~i~a~ls~-~ 528 (688)
.|+. +|+...+..|++.|..+|+|+.++ .+|++|+.++.+|++|+.+++++.+... .|..+++.|+|+.+. +
T Consensus 462 ~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~ 541 (715)
T 2va8_A 462 SLLAKQLVDVYFDRAIRWLLEHSFIKEEGNTFALTNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDGP 541 (715)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHTTSEEECSSEEEECHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHSTTSC
T ss_pred HHHHHHCCHHHHHHHHHHHHHCCCEEECCCEEEECHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCC
T ss_conf 07876426388999999998884976669868667689999997489867999999865425787899999952684334
Q ss_pred CCCCCCHHHHHHHHHHHHH-----HCC-CCC--------CHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9777976789999999987-----089-999--------39999999999983699700177404898999999999999
Q 005605 529 NCFVRPREAQKAADEAKAR-----FGH-IDG--------DHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQ 594 (688)
Q Consensus 529 ~~f~~~~~~~~~~~~~~~~-----~~~-~~s--------D~l~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~q 594 (688)
+++.++.+... ....... +.. ... .++....++++|.+......+|.++++..+.++.+.+...+
T Consensus 542 ~~~~r~~e~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~i~~~y~~~~gdl~~l~~~a~~ 620 (715)
T 2va8_A 542 LVSVGRNEEEE-LIELLEDLDCELLIEEPYEEDEYSLYINALKVALIMKDWMDEVDEDTILSKYNIGSGDLRNMVETMDW 620 (715)
T ss_dssp CCCCCHHHHHH-HHHHHTTCSSCCSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHH-HHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 57648678999-99999852111113666543102345777999999999984998789999978982449999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 9999997187656899999205999999999504232
Q 005605 595 LVRIMARFNLKLCSNDFNSRDYYVNIRKAMLAGYFMQ 631 (688)
Q Consensus 595 L~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~g~~~n 631 (688)
+.+.+.++....... ........+.+.+..|..+.
T Consensus 621 l~~a~~~i~~~~~~~--~~~~~l~~l~~rl~~gv~~e 655 (715)
T 2va8_A 621 LTYSAYHLSRELKLN--EHADKLRILNLRVRDGIKEE 655 (715)
T ss_dssp HHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHTCCGG
T ss_pred HHHHHHHHHHHHCCH--HHHHHHHHHHHHHHCCCCHH
T ss_conf 999999999994948--89999999999998289832
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=1.00 E-value=1 Score=466.35 Aligned_cols=525 Identities=15% Similarity=0.135 Sum_probs=397.7
Q ss_pred CCCCCC--CCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHCCHHHHHHCCCCCCCCCCCCCEEEEEC
Q ss_conf 878999--993799999983389974889999999751999999938988710305277753966788011374599970
Q 005605 45 RWNGKP--YSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACT 122 (688)
Q Consensus 45 ~f~~~~--l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGsGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t 122 (688)
+|++++ +++.+.+.+++.|+..++++|.++++.+.+|++++++||||||||+++++++++... . +..++++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~-~------~~~~l~i 74 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI-K------GGKSLYV 74 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHH-T------TCCEEEE
T ss_pred CHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHH-H------CCCEEEE
T ss_conf 55562030599999999868998899999999999838996899868961799999999999998-6------8959999
Q ss_pred CCCHHHHCCHHHHHHH--HHCCCCCCEECEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCC-CCCCCEEEECCCCC----
Q ss_conf 7731110329999997--6022223410002421245553654331497999999911422-35880786405575----
Q 005605 123 QPRRVAAMSVSRRVAE--EMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHE---- 195 (688)
Q Consensus 123 ~p~~~~~~~~~~~~~~--~~~~~~~~~vg~~~~~~~~~~~~~~i~~~T~g~ll~~l~~~~~-l~~~~~iIlDEahe---- 195 (688)
.|++..+.++++++.. ..+..++..+|+....+... ....|.++|||++...+..+.. +.++++||+||+|+
T Consensus 75 ~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~~-~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~ 153 (702)
T 2p6r_A 75 VPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEHL-GDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSE 153 (702)
T ss_dssp ESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSSCS-TTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCT
T ss_pred ECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHC-CCCCEEEECHHHHHHHHHCCHHHHHHCCEEEEEEEEECCCC
T ss_conf 37099999999999977704988999838877664352-69999998989999999757557762598988502554787
Q ss_pred -CHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CHHHHHCHHCCCCEEEECCCCCCCCEEECCCCCHHHHH---------
Q ss_conf -8122789999999998519994899943653-08999805359992540786555310002798012899---------
Q 005605 196 -RTLATDVLFGLLKEVLKNRPDLKLVVMSATL-EAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLE--------- 264 (688)
Q Consensus 196 -r~~~~d~ll~~l~~l~~~~~~~~~il~SAT~-~~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~~--------- 264 (688)
|....+.++..++. ..++.|+++||||+ +.+.+++|+. .+++..+++..|++.++...+...+..
T Consensus 154 ~r~~~~~~ll~~l~~---~~~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~ 229 (702)
T 2p6r_A 154 KRGATLEILVTKMRR---MNKALRVIGLSATAPNVTEIAEWLD-ADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRV 229 (702)
T ss_dssp TTHHHHHHHHHHHHH---HCTTCEEEEEECCCTTHHHHHHHTT-CEEEECCCCSSCEEEEEECSSEEEEEETTEEEEEEC
T ss_pred CCCCHHHHHHHHHHH---CCCCCEEEEECCCCCCHHHHHHHHC-CCCCCCCCCCCCCEEEEEECCEEECCCCCHHHHHHH
T ss_conf 765279999999984---3867659997887689999999848-972368887766468886178231057630144454
Q ss_pred HHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCC----------C-----------CEEEEEECCCCC
Q ss_conf 9999999997429999878843869999999999998775229999----------9-----------949999369999
Q 005605 265 AAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQV----------G-----------PVKVVPLYSTLP 323 (688)
Q Consensus 265 ~~~~~l~~~~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~----------~-----------~~~v~~lhs~~~ 323 (688)
.....+..... .++++|||++++++++.++..|........... . +..+..+||+++
T Consensus 230 ~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~ 307 (702)
T 2p6r_A 230 KFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLL 307 (702)
T ss_dssp CHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSC
T ss_pred HHHHHHHHHHH--CCCCEEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHCCEEEECCCCC
T ss_conf 69999999996--6997899838878999999999999876469588999998624553219999998469288669999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCEEEECCHHHHHHHCCC
Q ss_conf 88760002878888888999942899944853347666990899849964313224778830000100336558721256
Q 005605 324 PAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGR 403 (688)
Q Consensus 324 ~~~r~~~~~~~~~g~~~~~~~~~~viiaT~iae~gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GR 403 (688)
+++|..+++.|++| .++||+||+++|+|||+|++++||+. ...||. . ..|.|.++|.||+||
T Consensus 308 ~~~R~~v~~~f~~g-------~~~vlvaT~~l~~Gidip~~~~VI~~----~~~yd~---~----~~~~s~~~~~Qr~GR 369 (702)
T 2p6r_A 308 NGQRRVVEDAFRRG-------NIKVVVATPTLAAGVNLPARRVIVRS----LYRFDG---Y----SKRIKVSEYKQMAGR 369 (702)
T ss_dssp HHHHHHHHHHHHTT-------SCCEEEECSTTTSSSCCCBSEEEECC----SEEESS---S----EEECCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCC-------CCEEEEECCHHHCCCCCCCEEEEECC----CEEECC---C----CCCCCHHHHHHHHHH
T ss_conf 99999999999879-------98499978388665788733999847----623078---7----775899999998433
Q ss_pred CCCCC---CCEEEECCCHHHHCCCCC--CCCCCCCCCCCCHH------HHHHHHHCCCC-C---CCCC---CCC----CC
Q ss_conf 69999---945999026231200199--99999533469079------99999982999-8---7665---689----99
Q 005605 404 AGRTQ---PGKCFRLYTEKSFNNDLQ--PQTYPEILRSNLAN------TVLTLKKLGID-D---LVHF---DFM----DP 461 (688)
Q Consensus 404 aGR~~---~G~~~~l~~~~~~~~~~~--~~~~pei~r~~l~~------~~L~lk~~~~~-~---~~~~---~~l----~~ 461 (688)
|||.+ +|.||+++++.+++..+. ....||+.+.++.. .++.+...|.. + ...| .|+ .+
T Consensus 370 aGR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~~ 449 (702)
T 2p6r_A 370 AGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEI 449 (702)
T ss_dssp BSCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCC
T ss_pred CCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 27999998736999955731899999996089988465168605589999999971778889999999985067775017
Q ss_pred CCHHHHHHHHHHHHHCCCCCCC--CCCCHHHHHCCCCCCCHHHHHHHHHCCCC--CCHHHHHHHHHHHCC-CCCCCCCHH
Q ss_conf 9599999999999882774598--87582100000488884435565306787--884789999988239-997779767
Q 005605 462 PAPETLMRALEVLNYLGALDDD--GNLTEMGEKMSEFPLDPQMSKMLVESPKY--NCSNEILSISAMLSV-PNCFVRPRE 536 (688)
Q Consensus 462 P~~~~i~~a~~~L~~lgald~~--~~lT~~G~~~~~lpl~p~~~~~l~~~~~~--~c~~~~l~i~a~ls~-~~~f~~~~~ 536 (688)
|..+.+..|++.|..+|+++.+ +.+|++|+.++.+|++|..+++++.+... .|..+++.|+|+.+. ++.+.++.+
T Consensus 450 ~~~~~~~~al~~L~~~g~i~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~r~~e 529 (702)
T 2p6r_A 450 SLSYELERVVRQLENWGMVVEAAHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTD 529 (702)
T ss_dssp CCHHHHHHHHHHHHHTTSEEESSSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTTT
T ss_pred HHHHHHHHHHHHHHHCCCEEECCEECCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCH
T ss_conf 89999999999999885942899066486999999985789899999997430468789999995377444457778765
Q ss_pred HHHHHHHH-H--HHHCC-C--CC-------CHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 89999999-9--87089-9--99-------3999999999998369970017740489899999999999999999971
Q 005605 537 AQKAADEA-K--ARFGH-I--DG-------DHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMARF 602 (688)
Q Consensus 537 ~~~~~~~~-~--~~~~~-~--~s-------D~l~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~qL~~~l~~~ 602 (688)
..-.+.. + ..+.. + .. .++....++++|.+......+|.++++..+.++.+.+...++.+.+.++
T Consensus 530 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~~~gdl~~i~~~a~~l~~a~~~i 607 (702)
T 2p6r_A 530 -SWVEEEAFRLRKELSYYPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRI 607 (702)
T ss_dssp -HHHHHHHHHHGGGSSCCCCTTSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf -999999986546666786300001234566699999999998279868899885776775999999999999999999
No 4
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=1.00 E-value=1 Score=442.51 Aligned_cols=553 Identities=15% Similarity=0.118 Sum_probs=386.6
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH-HHCCCEEEEEECCCCCHHCCHHHHHHCCCCCCCCCCCCCEEEEECC
Q ss_conf 878999993799999983389974889999999-7519999999389887103052777539667880113745999707
Q 005605 45 RWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQV-LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQ 123 (688)
Q Consensus 45 ~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~-i~~g~~vii~g~TGsGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~ 123 (688)
+|+++++++++.+.++.+|+..++++|.++++. +.+|++++++||||||||+++.+++++.. .. .+..++++.
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~-~~-----~~~~~l~i~ 75 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRI-LT-----QGGKAVYIV 75 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHH-HH-----HCSEEEEEC
T ss_pred CHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHH-HH-----CCCEEEEEC
T ss_conf 576549998999999877998899999999999855799489986996379999999999999-86-----799899985
Q ss_pred CCHHHHCCHHHHHHH--HHCCCCCCEECEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCC-CCCCCEEEECCCC-----C
Q ss_conf 731110329999997--6022223410002421245553654331497999999911422-3588078640557-----5
Q 005605 124 PRRVAAMSVSRRVAE--EMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAH-----E 195 (688)
Q Consensus 124 p~~~~~~~~~~~~~~--~~~~~~~~~vg~~~~~~~~~~~~~~i~~~T~g~ll~~l~~~~~-l~~~~~iIlDEah-----e 195 (688)
|++..+.++++++.. ..+..++..+|.. ...........|.++||+.+..++..+.. +.++++||+||+| +
T Consensus 76 P~raLa~q~~~~~~~l~~~g~~v~~~~G~~-~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~ 154 (720)
T 2zj8_A 76 PLKALAEEKFQEFQDWEKIGLRVAMATGDY-DSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRD 154 (720)
T ss_dssp SSGGGHHHHHHHTGGGGGGTCCEEEECSCS-SCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTT
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEECCCC-CCCCCCCCCCCEEEECHHHHHHHHHCCHHHHHCCCEEEEECCCCCCCCC
T ss_conf 969999999999998873597799963897-7641214799999988899999997571466527989998985567876
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CHHHHHCHHCCCCEEEECCCCCCCCEEECCCCCHHH-------HHHHH
Q ss_conf 8122789999999998519994899943653-089998053599925407865553100027980128-------99999
Q 005605 196 RTLATDVLFGLLKEVLKNRPDLKLVVMSATL-EAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDY-------LEAAI 267 (688)
Q Consensus 196 r~~~~d~ll~~l~~l~~~~~~~~~il~SAT~-~~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~~~~~~-------~~~~~ 267 (688)
|....+.++..++ ++.++|+||||+ +.+.+++|+. .+.+....+..+++.++...+...+ .....
T Consensus 155 r~~~~~~ll~~l~------~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~ 227 (720)
T 2zj8_A 155 RGATLEVILAHML------GKAQIIGLSATIGNPEELAEWLN-AELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWE 227 (720)
T ss_dssp THHHHHHHHHHHB------TTBEEEEEECCCSCHHHHHHHTT-EEEEECCCCSSEEEEEEEETTEEEETTSCEEECSSTT
T ss_pred CCHHHHHHHHHHH------CCCEEEEECCCCCCHHHHHHHHC-CCCCCCCCCCCCCEEEEEECCEEECCCCCHHHHHHHH
T ss_conf 4479999999864------07769997588689999999829-8603789888763688975781311653200016999
Q ss_pred HHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCC------------C------------CCCEEEEEECCCCC
Q ss_conf 99999974299998788438699999999999987752299------------9------------99949999369999
Q 005605 268 RTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGD------------Q------------VGPVKVVPLYSTLP 323 (688)
Q Consensus 268 ~~l~~~~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~------------~------------~~~~~v~~lhs~~~ 323 (688)
..+.+.+. .++++|||++++++++.++..|......... . .-...+.++||+++
T Consensus 228 ~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~ 305 (720)
T 2zj8_A 228 ELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLG 305 (720)
T ss_dssp HHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSC
T ss_pred HHHHHHHH--CCCCEEEEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEECCCCC
T ss_conf 99999986--7998899965879999999999999987459066899999999875166508899998519463248999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCEEEECCHHHHHHHCCC
Q ss_conf 88760002878888888999942899944853347666990899849964313224778830000100336558721256
Q 005605 324 PAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGR 403 (688)
Q Consensus 324 ~~~r~~~~~~~~~g~~~~~~~~~~viiaT~iae~gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GR 403 (688)
+++|..+++.|++| .++||+||+++|+|+|+|++++||+.. ..|| ..|. .|.|.++|.||+||
T Consensus 306 ~~~R~~v~~~f~~g-------~~~vlvaT~~l~~Gvdip~~~~VI~~~----~~yd-~~g~-----~~~s~~~~~Qr~GR 368 (720)
T 2zj8_A 306 RDERVLVEENFRKG-------IIKAVVATPTLSAGINTPAFRVIIRDI----WRYS-DFGM-----ERIPIIEVHQMLGR 368 (720)
T ss_dssp HHHHHHHHHHHHTT-------SSCEEEECSTTGGGCCCCBSEEEECCS----EECC-SSSC-----EECCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCC-------CCEEEEECCHHHCCCCCCCEEEEECCC----EEEC-CCCC-----CCCCHHHHHHHHHH
T ss_conf 99999999999779-------975999881866628888528998487----2406-8887-----60899999998754
Q ss_pred CCCCC---CCEEEECCCHHHHCC---CCCCCCCCCCCCC-----CCHHHHHHHHHCCCC-C---CCCC---CCC------
Q ss_conf 69999---945999026231200---1999999953346-----907999999982999-8---7665---689------
Q 005605 404 AGRTQ---PGKCFRLYTEKSFNN---DLQPQTYPEILRS-----NLANTVLTLKKLGID-D---LVHF---DFM------ 459 (688)
Q Consensus 404 aGR~~---~G~~~~l~~~~~~~~---~~~~~~~pei~r~-----~l~~~~L~lk~~~~~-~---~~~~---~~l------ 459 (688)
|||.+ +|.||.++++.+... .+....++++... .+...++.....+.. + +.++ .|+
T Consensus 369 aGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~ 448 (720)
T 2zj8_A 369 AGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKD 448 (720)
T ss_dssp BCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCSC
T ss_pred CCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHCCC
T ss_conf 48998888766999966710999999996189987176568604399999999971778899999999982768774364
Q ss_pred CCCCHHHHHHHHHHHHHCCCCC-CCC---CCCHHHHHCCCCCCCHHHHHHHHHCCCC----CCHHHHHHHHHHHCC-CCC
Q ss_conf 9995999999999998827745-988---7582100000488884435565306787----884789999988239-997
Q 005605 460 DPPAPETLMRALEVLNYLGALD-DDG---NLTEMGEKMSEFPLDPQMSKMLVESPKY----NCSNEILSISAMLSV-PNC 530 (688)
Q Consensus 460 ~~P~~~~i~~a~~~L~~lgald-~~~---~lT~~G~~~~~lpl~p~~~~~l~~~~~~----~c~~~~l~i~a~ls~-~~~ 530 (688)
+++..+.+..+++.|...|+|+ .++ .+|++|+.++.+|++|..+++++.+... .|..+++.|+|+.++ ++.
T Consensus 449 ~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~~i 528 (720)
T 2zj8_A 449 TYSLEEKIRNILYFLLENEFIEISLEDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPF 528 (720)
T ss_dssp CHHHHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCC
T ss_conf 57899999999999998879357789827557699999997389999999999987642589888999975058532126
Q ss_pred CCCCHHHHHHHHHHHH---HH-C---CCC--C--------CHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 7797678999999998---70-8---999--9--------3999999999998369970017740489899999999999
Q 005605 531 FVRPREAQKAADEAKA---RF-G---HID--G--------DHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQ 593 (688)
Q Consensus 531 f~~~~~~~~~~~~~~~---~~-~---~~~--s--------D~l~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ 593 (688)
|.++.+...-.+.... .. . ... . .++...-++++|.+.......+.++.+..+.++.+.+...
T Consensus 529 ~~r~~e~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~~~l~~i~~~~~~~~gdl~~~~~~a~ 608 (720)
T 2zj8_A 529 NYSKREFERLEEEYYEFKDRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVETAE 608 (720)
T ss_dssp CCCHHHHHHHHHHHHHHGGGCSSCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 63777899999999856320123655334442013556777799999999998179878888883887676999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 999999971876568999992059999999995042322
Q 005605 594 QLVRIMARFNLKLCSNDFNSRDYYVNIRKAMLAGYFMQV 632 (688)
Q Consensus 594 qL~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~g~~~ni 632 (688)
++.+.+.++-...... ........+.+++..|.++..
T Consensus 609 ~l~~a~~~i~~~~g~~--~~~~~l~~l~~rl~~gv~~e~ 645 (720)
T 2zj8_A 609 WLVYSLKEIAKVLGAY--EIVDYLETLRVRVKYGIREEL 645 (720)
T ss_dssp HHHHHHHHHHHHHTCG--GGHHHHHHHHHHHHHTCCGGG
T ss_pred HHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHCCCCCCC
T ss_conf 9999999999974969--999999999999975898010
No 5
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=374.98 Aligned_cols=232 Identities=44% Similarity=0.790 Sum_probs=217.4
Q ss_pred CCCCCC-CCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 766568-9999599999999999882774598875821000004888844355653067878847899999882399977
Q 005605 453 LVHFDF-MDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCF 531 (688)
Q Consensus 453 ~~~~~~-l~~P~~~~i~~a~~~L~~lgald~~~~lT~~G~~~~~lpl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~~f 531 (688)
...|++ +|||+.+++.+|++.|..+||||++|+||++|+.|++||++|++||||+.|..++|.+++++|+|+|+++++|
T Consensus 5 ~~~l~~~ldpP~~~~l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl~P~lakmLl~a~~~~c~~~~l~iaA~Ls~~~~f 84 (270)
T 3i4u_A 5 GPEFELGTRGSPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVF 84 (270)
T ss_dssp ---------CCHHHHHHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCSCHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCCB
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
T ss_conf 10266689994999999999999986894799982689999971899879999999821238899999999997798634
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 79767899999999870899993999999999998369970017740489899999999999999999971876568999
Q 005605 532 VRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLKLCSNDF 611 (688)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~sD~l~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~qL~~~l~~~~~~~~~~~~ 611 (688)
..|.+.+++++..+..|.+..|||++++|+|++|.+++...+||++|+|++++|+++.+++.||..++++.++...+.+
T Consensus 85 ~~p~~~~~~a~~~~~~f~~~~sD~ltlLn~~~~~~~~~~~~~wC~~~fL~~~~l~~~~~ir~QL~~~l~~~~~~~~s~~- 163 (270)
T 3i4u_A 85 YRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCG- 163 (270)
T ss_dssp CCCGGGHHHHHHHHHTTCBTTBHHHHHHHHHHHHHHTTTCHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCCT-
T ss_pred CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-
T ss_conf 5972369999999987358887699999999999973753668988448999999999999999998987399867772-
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEECCCCCEEEEECCEEEEECCCCCCC-CCCCEEEEEEEECCCCCEEEECCCCCCCC
Q ss_conf 992059999999995042322576689968984369079987999899-99978999865024200354001138999
Q 005605 612 NSRDYYVNIRKAMLAGYFMQVAHLERTGQYLTVKDNQVVHLHPSNCLD-HKPEWVIYNEYVLTSRNFIRTVTDVRGEW 688 (688)
Q Consensus 612 ~~~~~~~~i~~~l~~g~~~nia~~~~~~~y~~~~~~~~v~ihpsS~l~-~~~~~vvy~e~~~t~k~y~r~vt~i~~eW 688 (688)
.++..|++||++|||+|+|++++++.|.++.+++.++|||||++. .+|+||||+|++.|+|.|||+||+|+|+|
T Consensus 164 ---~~~~~i~~~L~aG~~~nvA~~~~~~~Y~~~~~~~~v~iHPsS~L~~~~p~wvvy~Elv~Tsk~y~r~vt~I~p~w 238 (270)
T 3i4u_A 164 ---KSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRW 238 (270)
T ss_dssp ---TCTHHHHHHHHHHHGGGEEEECSSSSEEETTTCCEEEECTTSTTTTSCCSEEEEEEEEESSSEEEEEEEECCHHH
T ss_pred ---CHHHHHHHHHHHHHHHHHHEECCCCCEEECCCCCEEEECCHHHHCCCCCCEEEEEEHHHHHHHHHHHCCCCCHHH
T ss_conf ---168999999999848878223788866871589779988504530899987999855641476877400168999
No 6
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=359.89 Aligned_cols=344 Identities=17% Similarity=0.209 Sum_probs=260.2
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHCCHHHHHHCCCCCC----CC
Q ss_conf 56898557887899999379999998338997488999999975199999993898871030527775396678----80
Q 005605 36 MNNNNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIE----TP 111 (688)
Q Consensus 36 ~~~~~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGsGKTt~~~~~ll~~~~~~----~~ 111 (688)
..+.+.++.+|+++++++.+.+.+.+.|+..++++|.++++.+..|++++++|+||||||+++..+++...... ..
T Consensus 48 ~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~ 127 (434)
T 2db3_A 48 GSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELEL 127 (434)
T ss_dssp SSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCT
T ss_pred CCCCCCCCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 89989776885236999999999997699999989999999996699889987899982399999999999844532135
Q ss_pred CCCCCEEEEECCCCHHHHCCHHHHHHHHHCCCCCCEECEEEEECCCC--CCCCCCCCCCHHHHHHHHHCCCC-CCCCCEE
Q ss_conf 11374599970773111032999999760222234100024212455--53654331497999999911422-3588078
Q 005605 112 DRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCS--SARTVLKYLTDGMLLREAMTDPL-LERYKVI 188 (688)
Q Consensus 112 ~~~~~~~i~~t~p~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~--~~~~~i~~~T~g~ll~~l~~~~~-l~~~~~i 188 (688)
...+.++++|++++..|....+..+....+..++..+|......+.. .....|.++|||++++++..... +.+++++
T Consensus 128 ~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~l 207 (434)
T 2db3_A 128 GRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFV 207 (434)
T ss_dssp TCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCEE
T ss_conf 89648999348999999999999973347867999978888789999850699899987489999997288563327768
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHC---CCCCEEEEECCCCC--HHHHHCHHCCCCEEEECC----CCCCCCEEECCCCC
Q ss_conf 6405575812278999999999851---99948999436530--899980535999254078----65553100027980
Q 005605 189 VLDEAHERTLATDVLFGLLKEVLKN---RPDLKLVVMSATLE--AEKFQGYFYGAPLMKVPG----RLHPVEIFYTQEPE 259 (688)
Q Consensus 189 IlDEaher~~~~d~ll~~l~~l~~~---~~~~~~il~SAT~~--~~~~~~~~~~~~~~~v~~----~~~~v~~~~~~~~~ 259 (688)
|+|||| ++++.++.-. +..+... .++.|+++||||++ ...++..+...++....+ ....+.+.+.....
T Consensus 208 VlDEah-~~~~~gf~~~-~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~ 285 (434)
T 2db3_A 208 VLDEAD-RMLDMGFSED-MRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNK 285 (434)
T ss_dssp EEETHH-HHTSTTTHHH-HHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCG
T ss_pred EECCHH-HHHCCCCHHH-HHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECC
T ss_conf 875176-6630671999-99999725789885699995568989999999864698899953566666653369999371
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHCCCCCCCCCCC
Q ss_conf 12899999999999742999987884386999999999999877522999999499993699998876000287888888
Q 005605 260 RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSK 339 (688)
Q Consensus 260 ~~~~~~~~~~l~~~~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lhs~~~~~~r~~~~~~~~~g~~ 339 (688)
......+. .+..... +++|||+++++.++.+++.|... ++.+..+||++++.+|..+++.|+.|
T Consensus 286 ~~k~~~l~----~~l~~~~-~~~lVF~~t~~~a~~l~~~L~~~---------~~~~~~lhg~~~~~~R~~~l~~F~~g-- 349 (434)
T 2db3_A 286 YAKRSKLI----EILSEQA-DGTIVFVETKRGADFLASFLSEK---------EFPTTSIHGDRLQSQREQALRDFKNG-- 349 (434)
T ss_dssp GGHHHHHH----HHHHHCC-TTEEEECSSHHHHHHHHHHHHHT---------TCCEEEESTTSCHHHHHHHHHHHHTS--
T ss_pred HHHHHHHH----HHHHHCC-CCEEEEEECCHHHHHHHHHHHHC---------CCCEEEEECCCCHHHHHHHHHHHHCC--
T ss_conf 77799999----9998579-98799994718999999999867---------99879984999999999999999859--
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCEEEECCHHHHHHHCCCCCCC-CCCEEEECCCH
Q ss_conf 89999428999448533476669908998499643132247788300001003365587212566999-99459990262
Q 005605 340 EGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTE 418 (688)
Q Consensus 340 ~~~~~~~~viiaT~iae~gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~~~ 418 (688)
..+|+|||+++++|||||+|++||++|+ |.+.++|+||+|||||. +.|.|+.|++.
T Consensus 350 -----~~~vLvaT~v~~rGlDi~~v~~VI~~d~------------------p~~~~~y~qriGR~gR~g~~G~a~~~~~~ 406 (434)
T 2db3_A 350 -----SMKVLIATSVASRGLDIKNIKHVINYDM------------------PSKIDDYVHRIGRTGRVGNNGRATSFFDP 406 (434)
T ss_dssp -----SCSEEEECGGGTSSCCCTTCCEEEESSC------------------CSSHHHHHHHHTTSSCTTCCEEEEEEECT
T ss_pred -----CCCEEEECHHHHCCCCCCCCCEEEEECC------------------CCCHHHHHHHHCCCCCCCCCCEEEEEEEC
T ss_conf -----9939998206457788324898999789------------------99988999981606558998779999806
Q ss_pred HH
Q ss_conf 31
Q 005605 419 KS 420 (688)
Q Consensus 419 ~~ 420 (688)
++
T Consensus 407 ~~ 408 (434)
T 2db3_A 407 EK 408 (434)
T ss_dssp TT
T ss_pred CC
T ss_conf 42
No 7
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=1.00 E-value=1 Score=347.41 Aligned_cols=347 Identities=15% Similarity=0.216 Sum_probs=254.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHCCHHHHHHCCCCCCCCCCCCCE
Q ss_conf 89855788789999937999999833899748899999997519999999389887103052777539667880113745
Q 005605 38 NNNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKM 117 (688)
Q Consensus 38 ~~~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGsGKTt~~~~~ll~~~~~~~~~~~~~~ 117 (688)
+.+....+|+++++++.+.+.+.+.++.+++++|.++++.+.+|+++++.++||||||+++..++++..... ....+.+
T Consensus 34 ~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-~~~~~~l 112 (414)
T 3eiq_A 34 NWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-LKATQAL 112 (414)
T ss_dssp CCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT-SCSCCEE
T ss_pred CCCCHHCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHC-CCCEEEE
T ss_conf 744011477447999999999997699999989999867985799789987899850599999999998605-7861699
Q ss_pred EEEECCCCHHHHCCHHHHHHHHHCCCCCCEECEEEEECC---CCCCCCCCCCCCHHHHHHHHHCCCC-CCCCCEEEECCC
Q ss_conf 999707731110329999997602222341000242124---5553654331497999999911422-358807864055
Q 005605 118 MIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFED---CSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEA 193 (688)
Q Consensus 118 ~i~~t~p~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~---~~~~~~~i~~~T~g~ll~~l~~~~~-l~~~~~iIlDEa 193 (688)
+++|++.+..|....+..+....+..+...+|....... .......|.++||+++.+.+..+.. +.++++||+|||
T Consensus 113 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEa 192 (414)
T 3eiq_A 113 VLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEA 192 (414)
T ss_dssp EECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSH
T ss_pred EEECHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCCCCCCEEEEECH
T ss_conf 99375999999999999984515833999978965578999973699999998989999999759956303829999898
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCH--HHHHCHHCCCCEEE-ECCC---CCCCCEEECCCCCHHHHHHHH
Q ss_conf 75812278999999999851999489994365308--99980535999254-0786---555310002798012899999
Q 005605 194 HERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA--EKFQGYFYGAPLMK-VPGR---LHPVEIFYTQEPERDYLEAAI 267 (688)
Q Consensus 194 her~~~~d~ll~~l~~l~~~~~~~~~il~SAT~~~--~~~~~~~~~~~~~~-v~~~---~~~v~~~~~~~~~~~~~~~~~ 267 (688)
|. ..+.++...+...+....++.++++||||++. ..+...+...+... +... ...+..++......+. ..
T Consensus 193 h~-~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 268 (414)
T 3eiq_A 193 DE-MLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEW---KL 268 (414)
T ss_dssp HH-HHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTT---HH
T ss_pred HH-HHCCCCHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEECHHHH---HH
T ss_conf 88-620373999999998388877699999836878999999875897899924776688980599999676875---89
Q ss_pred HHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHCCCCCCCCCCCCCCCCCEE
Q ss_conf 99999974299998788438699999999999987752299999949999369999887600028788888889999428
Q 005605 268 RTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRK 347 (688)
Q Consensus 268 ~~l~~~~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lhs~~~~~~r~~~~~~~~~g~~~~~~~~~~ 347 (688)
..+..+......+++|||++++++++.+++.|... ++.+..+||++++++|..+++.|++| ..+
T Consensus 269 ~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~---------~~~~~~~h~~~~~~~r~~~~~~f~~g-------~~~ 332 (414)
T 3eiq_A 269 DTLCDLYETLTITQAVIFINTRRKVDWLTEKMHAR---------DFTVSAMHGDMDQKERDVIMREFRSG-------SSR 332 (414)
T ss_dssp HHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTT---------TCCCEEC---CHHHHHHHHHHHHSCC----------
T ss_pred HHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHC---------CCEEEEECCCCCHHHHHHHHHHHHCC-------CCC
T ss_conf 99999998479982899968789999999999866---------97089734779999999999999759-------993
Q ss_pred EEEECCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCEEEECCHHHHHHHCCCCCCC-CCCEEEECCCHHHHCC
Q ss_conf 999448533476669908998499643132247788300001003365587212566999-9945999026231200
Q 005605 348 IVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFNN 423 (688)
Q Consensus 348 viiaT~iae~gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~~~~~~~~ 423 (688)
|||||+++++|+|+|++++||++|. |.+..+|+||+||+||. ++|.||.|+++.+...
T Consensus 333 vlv~T~~~~~Gidip~v~~Vi~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 391 (414)
T 3eiq_A 333 VLITTDLLARGIDVQQVSLVINYDL------------------PTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRT 391 (414)
T ss_dssp CEEECSSCC--CCGGGCSCEEESSC------------------CSSTHHHHHHSCCC-------CEEEEECSTHHHH
T ss_pred EEEECCCCCCCCCCCCCCEEEEECC------------------CCCHHHHHHHCCCCCCCCCCCEEEEEECHHHHHH
T ss_conf 9998883126978567888999679------------------9988882341572568989766999972778999
No 8
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=1.00 E-value=1 Score=341.05 Aligned_cols=344 Identities=17% Similarity=0.232 Sum_probs=250.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHCCHHHHHHCCCCCCCCCCCCCEEE
Q ss_conf 85578878999993799999983389974889999999751999999938988710305277753966788011374599
Q 005605 40 NSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMI 119 (688)
Q Consensus 40 ~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGsGKTt~~~~~ll~~~~~~~~~~~~~~~i 119 (688)
.....+|+++++++.+.+.+...|+..++++|.++++.+.+|+++++.++||||||+++..++++...... ...+.+++
T Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~-~~~~~lil 111 (410)
T 2j0s_A 33 VDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQV-RETQALIL 111 (410)
T ss_dssp CCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTS-CSCCEEEE
T ss_pred CCCCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHCC-CCCEEEEE
T ss_conf 66779976669999999999976999998899999899847997799888999833999999999986256-78338997
Q ss_pred EECCCCHHHHCCHHHHHHHHHCCCCCCEECEEEEECCCC--CCCCCCCCCCHHHHHHHHHCCCC-CCCCCEEEECCCCCC
Q ss_conf 970773111032999999760222234100024212455--53654331497999999911422-358807864055758
Q 005605 120 ACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCS--SARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHER 196 (688)
Q Consensus 120 ~~t~p~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~--~~~~~i~~~T~g~ll~~l~~~~~-l~~~~~iIlDEaher 196 (688)
+|++.+..|.......+....+..+....|......... .....+.++|||++.+.+..... +.+++++|+||+|.
T Consensus 112 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~- 190 (410)
T 2j0s_A 112 APTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADE- 190 (410)
T ss_dssp CSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH-
T ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCCEEECCHHHHHHHHHHCCCCHHHEEEEEECCHHH-
T ss_conf 3848999999999999845477379999899787999998516998898598999999983893575605999756889-
Q ss_pred HHHHHHHHHHHHHHHH-CCCCCEEEEECCCCCHH--HHHCHHCCCCEEEECC-C---CCCCCEEECCCCCHHHHHHHHHH
Q ss_conf 1227899999999985-19994899943653089--9980535999254078-6---55531000279801289999999
Q 005605 197 TLATDVLFGLLKEVLK-NRPDLKLVVMSATLEAE--KFQGYFYGAPLMKVPG-R---LHPVEIFYTQEPERDYLEAAIRT 269 (688)
Q Consensus 197 ~~~~d~ll~~l~~l~~-~~~~~~~il~SAT~~~~--~~~~~~~~~~~~~v~~-~---~~~v~~~~~~~~~~~~~~~~~~~ 269 (688)
..+.++. ..+..+.. ..++.+++++|||++.+ .+...+...|...... . ...+.+++......+.. ...
T Consensus 191 ~~~~~~~-~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k---~~~ 266 (410)
T 2j0s_A 191 MLNKGFK-EQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWK---FDT 266 (410)
T ss_dssp HTSTTTH-HHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHH---HHH
T ss_pred HHHHHHH-HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEECCHHHH---HHH
T ss_conf 8763459-999999984864766999975799999999998758988999568655678855999993827769---999
Q ss_pred HHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 99997429999878843869999999999998775229999994999936999988760002878888888999942899
Q 005605 270 VVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIV 349 (688)
Q Consensus 270 l~~~~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lhs~~~~~~r~~~~~~~~~g~~~~~~~~~~vi 349 (688)
+..+......+++|||++++++++.+++.|... ++.+..+||++++.+|..+++.|++| ..+||
T Consensus 267 l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~h~~~~~~~r~~~~~~f~~g-------~~~vl 330 (410)
T 2j0s_A 267 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA---------NFTVSSMHGDMPQKERESIMKEFRSG-------ASRVL 330 (410)
T ss_dssp HHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHT---------TCCCEEECTTSCHHHHHHHHHHHHHT-------SSCEE
T ss_pred HHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHC---------CCCEEEEECCCCHHHHHHHHHHHHCC-------CCCEE
T ss_conf 999997357784799985787899999999867---------99469822789988999999998779-------99899
Q ss_pred EECCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCEEEECCHHHHHHHCCCCCCC-CCCEEEECCCHHHHCC
Q ss_conf 9448533476669908998499643132247788300001003365587212566999-9945999026231200
Q 005605 350 VSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFNN 423 (688)
Q Consensus 350 iaT~iae~gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~~~~~~~~ 423 (688)
|||+++++|+|+|++++||++|. |.+.++|+||+||+||. ++|.|+.|+++.+...
T Consensus 331 v~T~~~~~Gidi~~v~~Vi~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 387 (410)
T 2j0s_A 331 ISTDVWARGLDVPQVSLIINYDL------------------PNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRI 387 (410)
T ss_dssp EECGGGSSSCCCTTEEEEEESSC------------------CSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHH
T ss_pred EECCHHHCCCCCCCCCEEEEECC------------------CCCHHHHHHHCCCCCCCCCCEEEEEEECHHHHHH
T ss_conf 98976547488445998999799------------------9998999986464567999659999865789999
No 9
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=340.69 Aligned_cols=346 Identities=15% Similarity=0.166 Sum_probs=248.7
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHCCHHHHHHCCCCCCCCCCCCCEEEEECC
Q ss_conf 88789999937999999833899748899999997519999999389887103052777539667880113745999707
Q 005605 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQ 123 (688)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGsGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~ 123 (688)
..|..+++++.....+......+++++|.++++.+..|++++++|+||||||+++..+++.... .+..++++.
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~-------~g~rvlvl~ 234 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK-------NKQRVIYTS 234 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH-------TTCEEEEEE
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH-------CCCEEEEEC
T ss_conf 8756578773354778984799999999999999976998899889999719999999999975-------597499990
Q ss_pred CCHHHHCCHHHHHHHHHCCCCCCEECEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCC-CCCCCEEEECCCCCCHHHHHH
Q ss_conf 7311103299999976022223410002421245553654331497999999911422-358807864055758122789
Q 005605 124 PRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLATDV 202 (688)
Q Consensus 124 p~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~~T~g~ll~~l~~~~~-l~~~~~iIlDEaher~~~~d~ 202 (688)
|++..+.+.+..+....+ .++...|.. .......|.++|||++..++..... +.++++||+|||| +..+.++
T Consensus 235 PtraLa~Q~~~~l~~~~~-~VglltGd~-----~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH-~l~d~~r 307 (1108)
T 3l9o_A 235 PIKALSNQKYRELLAEFG-DVGLMTGDI-----TINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH-YMRDKER 307 (1108)
T ss_dssp SSHHHHHHHHHHHHHHTS-SEEEECSSC-----BCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGG-GTTSHHH
T ss_pred CCHHHHHHHHHHHHHHHC-CCCEEECCC-----CCCCCCCEEEECHHHHHHHHHCCCCCCCCCCEEEEHHHH-HCCCCCH
T ss_conf 849999999999999828-921896765-----268999989967699999997475432237899870021-2023006
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCC-CHHHHHCHHC---C--CCEEEECCCCCCCCEEECCCCCH---------------H
Q ss_conf 999999998519994899943653-0899980535---9--99254078655531000279801---------------2
Q 005605 203 LFGLLKEVLKNRPDLKLVVMSATL-EAEKFQGYFY---G--APLMKVPGRLHPVEIFYTQEPER---------------D 261 (688)
Q Consensus 203 ll~~l~~l~~~~~~~~~il~SAT~-~~~~~~~~~~---~--~~~~~v~~~~~~v~~~~~~~~~~---------------~ 261 (688)
-..+-..+....+..++++||||+ +...++.|+. + ..++....+..|++.++...... .
T Consensus 308 g~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~ 387 (1108)
T 3l9o_A 308 GVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREEN 387 (1108)
T ss_dssp HHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHH
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEECCCCCHHHHH
T ss_conf 89999999864777649997288898799999998515898279834787554068986247764256414422011566
Q ss_pred HH------------------------------------HHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 89------------------------------------999999999974299998788438699999999999987752
Q 005605 262 YL------------------------------------EAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITN 305 (688)
Q Consensus 262 ~~------------------------------------~~~~~~l~~~~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~ 305 (688)
+. ...+..+...+.....+++|||++++..++.++..|......
T Consensus 388 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~ 467 (1108)
T 3l9o_A 388 FQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFN 467 (1108)
T ss_dssp HHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCC
T ss_conf 89999998754113321123433222234455544320568999999999628998899958487899999999864699
Q ss_pred CCCCC------------------C------------CEEEEEECCCCCHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 29999------------------9------------94999936999988760002878888888999942899944853
Q 005605 306 MGDQV------------------G------------PVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIA 355 (688)
Q Consensus 306 ~~~~~------------------~------------~~~v~~lhs~~~~~~r~~~~~~~~~g~~~~~~~~~~viiaT~ia 355 (688)
..... . ...+..+||+|++.+|..+++.|+.| ..+|||||+++
T Consensus 468 ~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G-------~ikVLVAT~vl 540 (1108)
T 3l9o_A 468 SDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEG-------FLKVLFATETF 540 (1108)
T ss_dssp CC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHT-------CCCEEEEESCC
T ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCC-------CCEEEEECCHH
T ss_conf 77789999999998875046443300568878776515756525899899999999998679-------98499987277
Q ss_pred CCCCCCCCEEEEECCCCCCCEEECCCCCCCCCEEEECCHHHHHHHCCCCCCCC---CCEEEECCCHHH
Q ss_conf 34766699089984996431322477883000010033655872125669999---945999026231
Q 005605 356 ETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ---PGKCFRLYTEKS 420 (688)
Q Consensus 356 e~gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~~---~G~~~~l~~~~~ 420 (688)
++|||||++++||+++. .||+. ...|+|..+|+||+|||||.+ .|.||.++++..
T Consensus 541 a~GIDiP~v~~VI~~~~----~~d~~------~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~ 598 (1108)
T 3l9o_A 541 SIGLNMPAKTVVFTSVR----KWDGQ------QFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKM 598 (1108)
T ss_dssp CSCCCC--CEEEESCSE----EESSS------CEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCC
T ss_pred HCCCCCCCCEEEEECCC----CCCCC------CCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCC
T ss_conf 65778787459996576----66864------456389999997636347789998559999955886
No 10
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=1.00 E-value=1 Score=340.01 Aligned_cols=346 Identities=17% Similarity=0.189 Sum_probs=245.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCC--CEEEEEECCCCCHHCCHHHHHHCCCCCCCCCCCCCEEE
Q ss_conf 5788789999937999999833899748899999997519--99999938988710305277753966788011374599
Q 005605 42 LINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKAN--QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMI 119 (688)
Q Consensus 42 ~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g--~~vii~g~TGsGKTt~~~~~ll~~~~~~~~~~~~~~~i 119 (688)
+..+|.++++++.+.+.+..+|+..++++|.++++.+..+ +++++.|+||||||+++.++++....... ...+.+++
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~-~~~~~lil 168 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN-KYPQCLCL 168 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTS-CSCCEEEE
T ss_pred CCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC-CCCCEEEE
T ss_conf 75997776999999999997599999989999999997489985899857998351999999999876347-88747999
Q ss_pred EECCCCHHHHCCHHHHHHHHH-CCCCCCEECEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCC--CCCCCEEEECCCCCC
Q ss_conf 970773111032999999760-22223410002421245553654331497999999911422--358807864055758
Q 005605 120 ACTQPRRVAAMSVSRRVAEEM-DVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPL--LERYKVIVLDEAHER 196 (688)
Q Consensus 120 ~~t~p~~~~~~~~~~~~~~~~-~~~~~~~vg~~~~~~~~~~~~~~i~~~T~g~ll~~l~~~~~--l~~~~~iIlDEaher 196 (688)
+|++.+..|....+..+.... +..++..++.. ...........|.++|||++++++..... +.++++||+||+|.
T Consensus 169 ~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~- 246 (479)
T 3fmp_B 169 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGN-KLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV- 246 (479)
T ss_dssp CSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTC-CCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHH-
T ss_pred ECHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC-CCCCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCEEEEECHHH-
T ss_conf 383999999999999997228874599996886-402111478998997863899999726996723398999977788-
Q ss_pred HHHHHHHHHHHHHHHH-CCCCCEEEEECCCCCH--HHHHCHHCCCCE-EEECCC---CCCCCEEECCCCCHHHHHHHHHH
Q ss_conf 1227899999999985-1999489994365308--999805359992-540786---55531000279801289999999
Q 005605 197 TLATDVLFGLLKEVLK-NRPDLKLVVMSATLEA--EKFQGYFYGAPL-MKVPGR---LHPVEIFYTQEPERDYLEAAIRT 269 (688)
Q Consensus 197 ~~~~d~ll~~l~~l~~-~~~~~~~il~SAT~~~--~~~~~~~~~~~~-~~v~~~---~~~v~~~~~~~~~~~~~~~~~~~ 269 (688)
+.+.......+..+.. ..++.|++++|||++. ..++..+...|. +.+... ...+.+.+...+.... ....
T Consensus 247 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 323 (479)
T 3fmp_B 247 MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE---KFQA 323 (479)
T ss_dssp HHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC----------------------------
T ss_pred HHHCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEEEECCHHH---HHHH
T ss_conf 8441896789999996388546499994878879999999976998699626645676776699999477788---9999
Q ss_pred HHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 99997429999878843869999999999998775229999994999936999988760002878888888999942899
Q 005605 270 VVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIV 349 (688)
Q Consensus 270 l~~~~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lhs~~~~~~r~~~~~~~~~g~~~~~~~~~~vi 349 (688)
+..++.....+++|||++++..++.+++.|... ++.+..+||++++.+|..+++.|+.| ..+||
T Consensus 324 l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~---------~~~v~~lh~~~~~~~R~~~~~~f~~g-------~~~iL 387 (479)
T 3fmp_B 324 LCNLYGAITIAQAMIFCHTRKTASWLAAELSKE---------GHQVALLSGEMMVEQRAAVIERFREG-------KEKVL 387 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHC---------CCCEEEECCCCCHHHHHHHHHHHHCC-------CCCEE
T ss_conf 999985256786699968688999999999758---------95189960889999999999999769-------99599
Q ss_pred EECCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCEEEECCHHHHHHHCCCCCCC-CCCEEEECCCHHHH
Q ss_conf 9448533476669908998499643132247788300001003365587212566999-99459990262312
Q 005605 350 VSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (688)
Q Consensus 350 iaT~iae~gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~~~~~~ 421 (688)
|||+++++|+|+|++++||++|+.....+ +.+..+|+||+|||||. ++|.|+.|++..+.
T Consensus 388 v~T~~~~~GlDip~v~~VI~~d~p~~~~~------------~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~ 448 (479)
T 3fmp_B 388 VTTNVCARGIDVEQVSVVINFDLPVDKDG------------NPDNETYLHRIGRTGRFGKRGLAVNMVDSKHS 448 (479)
T ss_dssp -------------------------------------------------------------------------
T ss_pred EECCCCCCCCCCCCCCEEEEECCCCCCCC------------CCCHHHHHHHHCCCCCCCCCCEEEEEECCCCH
T ss_conf 98442116776223998999669998766------------77899999872433569998439999747305
Done!