Query 005607
Match_columns 688
No_of_seqs 321 out of 2316
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 02:05:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005607.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005607hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03000 amine oxidase 100.0 4E-113 8E-118 977.3 64.2 667 2-675 141-820 (881)
2 PLN02328 lysine-specific histo 100.0 5.2E-99 1E-103 863.5 62.4 611 2-643 192-805 (808)
3 PLN02529 lysine-specific histo 100.0 5.9E-99 1E-103 860.6 62.1 620 2-652 117-736 (738)
4 KOG0029 Amine oxidase [Seconda 100.0 4.3E-54 9.3E-59 475.4 37.7 473 45-529 13-500 (501)
5 PLN02976 amine oxidase 100.0 5.9E-52 1.3E-56 482.9 46.7 439 46-493 692-1190(1713)
6 PLN02268 probable polyamine ox 100.0 5.3E-50 1.1E-54 445.4 44.5 420 48-489 1-434 (435)
7 PLN02568 polyamine oxidase 100.0 4.6E-48 9.9E-53 435.0 44.4 435 46-489 4-535 (539)
8 PLN02676 polyamine oxidase 100.0 2.1E-47 4.5E-52 426.9 44.8 426 47-491 26-475 (487)
9 KOG0685 Flavin-containing amin 100.0 8.5E-47 1.8E-51 396.3 34.8 432 45-493 19-495 (498)
10 COG1231 Monoamine oxidase [Ami 100.0 5.4E-44 1.2E-48 376.4 28.0 422 46-490 6-448 (450)
11 TIGR00562 proto_IX_ox protopor 100.0 4.2E-38 9E-43 352.7 35.4 409 47-489 2-460 (462)
12 PRK12416 protoporphyrinogen ox 100.0 7.3E-37 1.6E-41 342.7 35.8 407 48-489 2-461 (463)
13 PF01593 Amino_oxidase: Flavin 100.0 1.4E-37 3E-42 342.9 29.4 415 57-486 1-450 (450)
14 PLN02576 protoporphyrinogen ox 100.0 8.4E-37 1.8E-41 345.2 35.6 413 46-490 11-488 (496)
15 PRK11883 protoporphyrinogen ox 100.0 1E-35 2.2E-40 332.3 34.4 405 48-487 1-450 (451)
16 PRK07233 hypothetical protein; 100.0 5.7E-34 1.2E-38 316.4 35.6 407 49-490 1-432 (434)
17 TIGR02731 phytoene_desat phyto 100.0 3.4E-33 7.3E-38 312.2 36.6 406 49-486 1-453 (453)
18 PLN02612 phytoene desaturase 100.0 4.5E-33 9.7E-38 317.1 34.6 410 47-491 93-550 (567)
19 COG1232 HemY Protoporphyrinoge 100.0 6.2E-33 1.3E-37 300.2 28.0 402 48-486 1-443 (444)
20 PRK07208 hypothetical protein; 100.0 6.4E-31 1.4E-35 295.9 34.2 410 46-488 3-460 (479)
21 PLN02487 zeta-carotene desatur 100.0 2E-30 4.3E-35 292.2 34.5 411 46-489 74-553 (569)
22 TIGR02732 zeta_caro_desat caro 100.0 2.1E-30 4.6E-35 289.7 32.8 402 49-486 1-474 (474)
23 TIGR03467 HpnE squalene-associ 100.0 4.2E-30 9.1E-35 283.9 34.6 388 61-486 1-418 (419)
24 TIGR02733 desat_CrtD C-3',4' d 100.0 6.5E-28 1.4E-32 272.3 37.3 417 48-487 2-490 (492)
25 TIGR02734 crtI_fam phytoene de 100.0 4.5E-28 9.7E-33 274.3 29.8 412 50-491 1-494 (502)
26 COG3380 Predicted NAD/FAD-depe 100.0 1E-28 2.3E-33 241.8 18.2 321 48-488 2-330 (331)
27 TIGR02730 carot_isom carotene 100.0 1E-25 2.2E-30 254.3 36.4 421 48-489 1-492 (493)
28 KOG1276 Protoporphyrinogen oxi 99.9 1.2E-25 2.6E-30 233.1 28.3 416 47-486 11-490 (491)
29 COG1233 Phytoene dehydrogenase 99.9 6.4E-23 1.4E-27 230.1 18.8 235 47-297 3-281 (487)
30 COG3349 Uncharacterized conser 99.9 7E-22 1.5E-26 213.2 19.1 417 48-494 1-468 (485)
31 COG2907 Predicted NAD/FAD-bind 99.9 1.9E-20 4.1E-25 189.6 22.6 271 47-332 8-304 (447)
32 KOG4254 Phytoene desaturase [C 99.7 3.3E-16 7.2E-21 163.8 23.1 240 235-491 252-548 (561)
33 TIGR00031 UDP-GALP_mutase UDP- 99.7 7.6E-16 1.7E-20 165.8 19.8 247 48-327 2-263 (377)
34 PTZ00363 rab-GDP dissociation 99.6 5.3E-13 1.1E-17 147.2 30.5 240 46-294 3-287 (443)
35 PF13450 NAD_binding_8: NAD(P) 99.5 1.4E-14 3.1E-19 117.1 6.6 67 52-125 1-68 (68)
36 PRK13977 myosin-cross-reactive 99.5 1.7E-11 3.7E-16 136.7 27.2 72 47-125 22-97 (576)
37 COG2081 Predicted flavoprotein 99.5 1.6E-12 3.5E-17 136.3 16.8 56 239-294 102-164 (408)
38 COG0562 Glf UDP-galactopyranos 99.3 3.1E-11 6.6E-16 122.4 11.0 233 47-299 1-243 (374)
39 PRK10157 putative oxidoreducta 99.2 1.2E-09 2.5E-14 121.4 24.3 38 47-84 5-42 (428)
40 PRK10015 oxidoreductase; Provi 99.2 6.7E-09 1.4E-13 115.3 26.1 37 47-83 5-41 (429)
41 PF03486 HI0933_like: HI0933-l 99.2 2.7E-10 5.9E-15 124.5 13.7 53 245-297 107-166 (409)
42 PRK07364 2-octaprenyl-6-methox 99.2 7.8E-09 1.7E-13 114.4 25.4 36 47-82 18-53 (415)
43 TIGR02032 GG-red-SF geranylger 99.1 6.6E-09 1.4E-13 108.9 23.2 37 48-84 1-37 (295)
44 COG0644 FixC Dehydrogenases (f 99.1 6.8E-09 1.5E-13 114.2 22.4 42 47-88 3-44 (396)
45 TIGR01988 Ubi-OHases Ubiquinon 99.1 1.3E-08 2.9E-13 111.1 23.9 41 257-297 122-163 (385)
46 PRK12409 D-amino acid dehydrog 99.1 4.3E-08 9.2E-13 108.4 28.1 37 48-84 2-38 (410)
47 COG0654 UbiH 2-polyprenyl-6-me 99.1 2.3E-08 4.9E-13 109.7 24.0 192 257-490 120-317 (387)
48 PRK11259 solA N-methyltryptoph 99.1 1.7E-07 3.7E-12 102.2 30.7 43 255-297 162-204 (376)
49 PF01266 DAO: FAD dependent ox 99.1 3.7E-09 8E-14 113.7 16.9 59 239-297 136-203 (358)
50 PRK08773 2-octaprenyl-3-methyl 99.0 3.6E-08 7.7E-13 108.3 24.2 42 256-297 127-169 (392)
51 PRK09126 hypothetical protein; 99.0 3.3E-08 7.2E-13 108.5 22.6 44 256-299 125-169 (392)
52 PRK07494 2-octaprenyl-6-methox 99.0 3E-08 6.5E-13 108.7 21.1 36 47-82 7-42 (388)
53 PRK08020 ubiF 2-octaprenyl-3-m 99.0 3.7E-08 8E-13 108.2 21.6 52 248-299 117-171 (391)
54 TIGR01984 UbiH 2-polyprenyl-6- 99.0 5.3E-08 1.1E-12 106.5 22.4 51 247-297 109-162 (382)
55 TIGR03329 Phn_aa_oxid putative 99.0 1.3E-08 2.8E-13 114.3 17.5 38 45-83 22-61 (460)
56 PRK08013 oxidoreductase; Provi 99.0 6.8E-08 1.5E-12 106.5 22.7 53 248-300 116-171 (400)
57 PRK05714 2-octaprenyl-3-methyl 99.0 7.6E-08 1.6E-12 106.2 23.1 53 248-300 117-171 (405)
58 PRK11728 hydroxyglutarate oxid 99.0 2.1E-09 4.6E-14 118.2 10.6 41 48-88 3-45 (393)
59 COG0579 Predicted dehydrogenas 98.9 7.9E-09 1.7E-13 112.2 13.9 42 47-88 3-46 (429)
60 PRK07333 2-octaprenyl-6-methox 98.9 4E-08 8.7E-13 108.3 19.7 42 256-297 125-167 (403)
61 TIGR01377 soxA_mon sarcosine o 98.9 1.4E-08 3.1E-13 110.9 15.7 41 256-296 159-199 (380)
62 COG1635 THI4 Ribulose 1,5-bisp 98.9 1.4E-09 3E-14 105.0 6.2 69 48-133 31-100 (262)
63 PRK07608 ubiquinone biosynthes 98.9 2E-07 4.3E-12 102.2 23.6 37 47-83 5-41 (388)
64 PRK08850 2-octaprenyl-6-methox 98.9 7.9E-08 1.7E-12 106.1 20.1 51 248-298 116-169 (405)
65 PRK06184 hypothetical protein; 98.9 1.2E-07 2.7E-12 107.6 21.7 36 47-82 3-38 (502)
66 PRK07190 hypothetical protein; 98.9 2.2E-07 4.8E-12 104.7 23.3 45 256-300 123-168 (487)
67 PRK06834 hypothetical protein; 98.9 4E-07 8.6E-12 102.8 24.9 44 256-299 114-158 (488)
68 PRK08132 FAD-dependent oxidore 98.9 5.6E-07 1.2E-11 103.4 26.4 36 47-82 23-58 (547)
69 PRK05868 hypothetical protein; 98.9 6.2E-07 1.4E-11 97.8 25.0 47 254-300 116-163 (372)
70 PRK05732 2-octaprenyl-6-methox 98.9 3.1E-07 6.6E-12 100.9 22.5 50 248-297 117-169 (395)
71 PRK08849 2-octaprenyl-3-methyl 98.8 2.7E-07 5.9E-12 101.1 21.8 45 256-300 125-170 (384)
72 PRK08244 hypothetical protein; 98.8 4.2E-07 9.1E-12 103.0 23.8 34 48-81 3-36 (493)
73 PLN02172 flavin-containing mon 98.8 4.2E-08 9.1E-13 109.5 15.0 41 47-87 10-50 (461)
74 PF13738 Pyr_redox_3: Pyridine 98.8 2.8E-08 6.1E-13 98.5 12.1 41 256-296 96-137 (203)
75 PRK08243 4-hydroxybenzoate 3-m 98.8 7.1E-07 1.5E-11 98.1 24.2 35 47-81 2-36 (392)
76 PRK07045 putative monooxygenas 98.8 8.2E-07 1.8E-11 97.4 24.6 36 47-82 5-40 (388)
77 PRK00711 D-amino acid dehydrog 98.8 2.2E-08 4.8E-13 110.8 12.0 39 48-86 1-39 (416)
78 PRK06185 hypothetical protein; 98.8 4.5E-07 9.8E-12 100.1 21.5 36 46-81 5-40 (407)
79 PF05834 Lycopene_cycl: Lycope 98.8 5E-06 1.1E-10 90.8 29.2 48 249-296 93-141 (374)
80 PRK11445 putative oxidoreducta 98.8 3.2E-06 7E-11 91.5 27.4 46 254-299 110-159 (351)
81 PTZ00383 malate:quinone oxidor 98.8 3E-08 6.4E-13 111.3 11.7 39 46-84 44-84 (497)
82 PRK01747 mnmC bifunctional tRN 98.8 1.2E-07 2.6E-12 111.2 17.2 39 48-86 261-299 (662)
83 TIGR02023 BchP-ChlP geranylger 98.8 2.1E-06 4.6E-11 94.3 25.7 32 48-79 1-32 (388)
84 PRK07236 hypothetical protein; 98.8 1.1E-07 2.4E-12 104.3 15.4 44 257-300 113-157 (386)
85 COG0665 DadA Glycine/D-amino a 98.7 2.4E-06 5.2E-11 93.5 25.2 37 47-83 4-40 (387)
86 PRK06126 hypothetical protein; 98.7 6.6E-07 1.4E-11 102.8 21.6 35 47-81 7-41 (545)
87 PF01946 Thi4: Thi4 family; PD 98.7 4.2E-09 9.1E-14 102.5 2.7 69 48-133 18-87 (230)
88 PLN02463 lycopene beta cyclase 98.7 4.6E-06 9.9E-11 92.8 26.5 35 46-80 27-61 (447)
89 PRK06183 mhpA 3-(3-hydroxyphen 98.7 3.4E-07 7.3E-12 104.9 18.0 38 46-83 9-46 (538)
90 PRK06481 fumarate reductase fl 98.7 8.1E-07 1.8E-11 100.8 20.5 41 46-86 60-100 (506)
91 PRK07588 hypothetical protein; 98.7 1.3E-07 2.8E-12 104.0 13.2 50 251-300 111-161 (391)
92 PRK06847 hypothetical protein; 98.7 1.3E-07 2.9E-12 103.0 12.6 44 256-299 121-165 (375)
93 PRK08274 tricarballylate dehyd 98.7 4.9E-07 1.1E-11 101.7 17.5 39 47-85 4-44 (466)
94 PRK06617 2-octaprenyl-6-methox 98.7 3.1E-06 6.6E-11 92.5 23.1 44 257-300 120-163 (374)
95 TIGR01989 COQ6 Ubiquinone bios 98.7 8.4E-07 1.8E-11 99.0 19.0 53 248-300 122-186 (437)
96 PRK05257 malate:quinone oxidor 98.7 4.2E-07 9E-12 102.4 16.3 41 47-87 5-47 (494)
97 PRK06996 hypothetical protein; 98.7 3.1E-06 6.7E-11 93.3 22.8 48 247-294 119-171 (398)
98 PRK13339 malate:quinone oxidor 98.7 2.9E-07 6.2E-12 103.1 14.5 38 47-84 6-45 (497)
99 PRK06753 hypothetical protein; 98.6 1.4E-07 2.9E-12 103.0 11.4 44 257-300 111-155 (373)
100 TIGR03364 HpnW_proposed FAD de 98.6 1.5E-07 3.4E-12 102.2 11.8 34 48-81 1-34 (365)
101 PRK07538 hypothetical protein; 98.6 2.7E-06 5.9E-11 94.2 21.8 35 48-82 1-35 (413)
102 PLN02927 antheraxanthin epoxid 98.6 4.3E-06 9.4E-11 96.3 23.4 54 247-300 194-251 (668)
103 TIGR01320 mal_quin_oxido malat 98.6 5.4E-07 1.2E-11 101.3 15.5 38 48-85 1-40 (483)
104 TIGR00275 flavoprotein, HI0933 98.6 4.1E-07 8.8E-12 100.2 14.1 53 246-298 104-161 (400)
105 TIGR01813 flavo_cyto_c flavocy 98.6 8.7E-07 1.9E-11 98.9 16.7 38 49-86 1-39 (439)
106 PRK12266 glpD glycerol-3-phosp 98.6 7.5E-07 1.6E-11 101.1 15.9 39 46-84 5-43 (508)
107 PRK07803 sdhA succinate dehydr 98.6 2.5E-05 5.4E-10 90.8 28.5 38 47-84 8-45 (626)
108 TIGR01373 soxB sarcosine oxida 98.6 8.4E-07 1.8E-11 98.0 15.7 38 46-84 29-68 (407)
109 PF00890 FAD_binding_2: FAD bi 98.6 5.2E-07 1.1E-11 100.0 13.8 36 49-84 1-36 (417)
110 PRK07121 hypothetical protein; 98.6 1.7E-06 3.7E-11 98.0 18.1 41 46-86 19-59 (492)
111 PRK08294 phenol 2-monooxygenas 98.6 1E-05 2.2E-10 94.2 24.3 37 45-81 30-67 (634)
112 PRK12845 3-ketosteroid-delta-1 98.6 2.1E-06 4.6E-11 98.4 18.4 40 46-86 15-54 (564)
113 KOG1399 Flavin-containing mono 98.6 4E-07 8.6E-12 100.2 11.9 40 47-86 6-45 (448)
114 PLN02697 lycopene epsilon cycl 98.5 3.4E-05 7.5E-10 87.3 27.5 35 45-79 106-140 (529)
115 PRK08163 salicylate hydroxylas 98.5 3.6E-07 7.8E-12 100.5 11.0 53 247-299 113-168 (396)
116 PRK11101 glpA sn-glycerol-3-ph 98.5 2E-06 4.2E-11 98.6 16.9 36 47-82 6-41 (546)
117 TIGR01292 TRX_reduct thioredox 98.5 4.3E-07 9.3E-12 95.5 10.6 38 48-86 1-38 (300)
118 PRK09897 hypothetical protein; 98.5 1.4E-06 3.1E-11 98.4 15.1 42 48-89 2-46 (534)
119 TIGR03219 salicylate_mono sali 98.5 1.1E-06 2.4E-11 97.2 14.0 53 247-299 105-161 (414)
120 PRK12842 putative succinate de 98.5 3.7E-06 8E-11 97.0 17.9 41 47-87 9-49 (574)
121 PRK12834 putative FAD-binding 98.4 4.6E-06 1E-10 95.7 16.8 40 47-86 4-45 (549)
122 KOG2820 FAD-dependent oxidored 98.4 1.2E-06 2.7E-11 89.9 10.2 62 238-299 148-214 (399)
123 PRK06475 salicylate hydroxylas 98.4 2.2E-06 4.9E-11 94.4 13.0 35 48-82 3-37 (400)
124 PRK07573 sdhA succinate dehydr 98.4 8.2E-06 1.8E-10 95.0 17.8 38 47-84 35-72 (640)
125 COG0578 GlpA Glycerol-3-phosph 98.4 1.6E-05 3.4E-10 88.6 18.8 39 46-84 11-49 (532)
126 PRK06134 putative FAD-binding 98.4 1.7E-05 3.7E-10 91.6 19.6 42 46-87 11-52 (581)
127 TIGR00136 gidA glucose-inhibit 98.4 4.4E-05 9.6E-10 86.6 22.0 39 48-86 1-39 (617)
128 PRK15317 alkyl hydroperoxide r 98.4 3.8E-06 8.2E-11 95.7 13.5 41 45-87 209-249 (517)
129 PRK12835 3-ketosteroid-delta-1 98.3 1.5E-05 3.3E-10 91.9 18.5 40 46-85 10-49 (584)
130 PF13454 NAD_binding_9: FAD-NA 98.3 4.5E-06 9.7E-11 79.4 11.7 48 248-295 106-155 (156)
131 TIGR00292 thiazole biosynthesi 98.3 5E-07 1.1E-11 92.9 5.5 39 48-86 22-60 (254)
132 PF00996 GDI: GDP dissociation 98.3 2.4E-05 5.1E-10 85.9 18.8 236 46-292 3-284 (438)
133 PRK04176 ribulose-1,5-biphosph 98.3 5.8E-07 1.3E-11 92.7 5.3 39 48-86 26-64 (257)
134 PRK12839 hypothetical protein; 98.3 3E-05 6.5E-10 89.2 19.4 41 47-87 8-48 (572)
135 PRK06175 L-aspartate oxidase; 98.3 1.3E-05 2.7E-10 89.3 15.8 38 47-85 4-41 (433)
136 TIGR03140 AhpF alkyl hydropero 98.3 7.2E-06 1.6E-10 93.4 13.8 40 45-86 210-249 (515)
137 TIGR00551 nadB L-aspartate oxi 98.2 1.8E-05 3.9E-10 89.5 15.8 38 47-85 2-39 (488)
138 PF06100 Strep_67kDa_ant: Stre 98.2 3.6E-05 7.8E-10 84.2 17.1 44 47-90 2-49 (500)
139 PRK05945 sdhA succinate dehydr 98.2 2.4E-05 5.2E-10 90.3 16.9 38 47-84 3-42 (575)
140 PRK12843 putative FAD-binding 98.2 4.6E-05 1E-09 87.9 19.0 41 47-87 16-56 (578)
141 PRK08958 sdhA succinate dehydr 98.2 2.8E-05 6.2E-10 89.7 16.9 38 47-84 7-44 (588)
142 TIGR02485 CobZ_N-term precorri 98.2 2.2E-05 4.8E-10 87.5 15.5 55 241-295 117-181 (432)
143 PLN02661 Putative thiazole syn 98.2 2.9E-06 6.3E-11 90.0 7.3 41 47-87 92-133 (357)
144 PRK07395 L-aspartate oxidase; 98.2 1.9E-05 4.2E-10 90.4 14.2 40 45-85 7-46 (553)
145 PTZ00139 Succinate dehydrogena 98.2 4.1E-05 8.9E-10 88.9 16.9 38 47-84 29-66 (617)
146 PRK09078 sdhA succinate dehydr 98.2 4.8E-05 1E-09 88.1 17.3 38 47-84 12-49 (598)
147 COG2072 TrkA Predicted flavopr 98.2 2.4E-06 5.1E-11 95.1 6.1 43 45-87 6-49 (443)
148 PLN02852 ferredoxin-NADP+ redu 98.1 3.2E-06 6.9E-11 94.5 6.9 42 47-88 26-69 (491)
149 COG0493 GltD NADPH-dependent g 98.1 5.8E-06 1.2E-10 91.6 8.6 75 4-88 90-164 (457)
150 TIGR03315 Se_ygfK putative sel 98.1 2.7E-06 5.9E-11 101.8 6.4 42 47-88 537-578 (1012)
151 PRK12779 putative bifunctional 98.1 2.5E-06 5.5E-11 102.8 6.1 41 47-87 306-346 (944)
152 PRK08071 L-aspartate oxidase; 98.1 2.2E-05 4.9E-10 89.1 13.5 38 47-85 3-40 (510)
153 PRK06854 adenylylsulfate reduc 98.1 5.7E-05 1.2E-09 87.6 16.8 37 47-83 11-49 (608)
154 PRK05249 soluble pyridine nucl 98.1 2.9E-06 6.4E-11 95.3 5.4 40 47-86 5-44 (461)
155 PRK12831 putative oxidoreducta 98.1 4.3E-06 9.3E-11 93.8 6.6 41 47-87 140-180 (464)
156 PF01494 FAD_binding_3: FAD bi 98.1 2.5E-06 5.4E-11 91.6 4.5 35 48-82 2-36 (356)
157 PRK06069 sdhA succinate dehydr 98.1 6.8E-05 1.5E-09 86.6 16.5 39 47-85 5-46 (577)
158 TIGR01350 lipoamide_DH dihydro 98.1 4E-06 8.7E-11 94.2 5.5 39 48-87 2-40 (461)
159 PF00743 FMO-like: Flavin-bind 98.1 3.5E-06 7.5E-11 95.6 4.9 39 48-86 2-40 (531)
160 PRK06263 sdhA succinate dehydr 98.0 6.3E-05 1.4E-09 86.3 15.1 38 47-85 7-45 (543)
161 COG1148 HdrA Heterodisulfide r 98.0 4.4E-06 9.6E-11 89.5 4.9 64 26-89 102-166 (622)
162 TIGR01424 gluta_reduc_2 glutat 98.0 5.2E-06 1.1E-10 92.9 5.3 40 47-87 2-41 (446)
163 PRK06115 dihydrolipoamide dehy 98.0 5.4E-06 1.2E-10 93.2 5.4 41 47-87 3-43 (466)
164 PF12831 FAD_oxidored: FAD dep 98.0 4.9E-06 1.1E-10 92.5 4.8 39 49-87 1-39 (428)
165 PRK09853 putative selenate red 98.0 7E-06 1.5E-10 98.0 6.3 42 47-88 539-580 (1019)
166 PLN00093 geranylgeranyl diphos 98.0 6.9E-06 1.5E-10 91.7 5.9 35 46-80 38-72 (450)
167 TIGR01421 gluta_reduc_1 glutat 98.0 5.7E-06 1.2E-10 92.6 5.2 40 47-87 2-41 (450)
168 TIGR01176 fum_red_Fp fumarate 98.0 0.00011 2.4E-09 84.7 15.5 40 47-86 3-44 (580)
169 PRK07251 pyridine nucleotide-d 98.0 6.9E-06 1.5E-10 91.7 5.5 40 47-86 3-43 (438)
170 PRK13369 glycerol-3-phosphate 98.0 8E-06 1.7E-10 92.7 5.8 39 46-84 5-43 (502)
171 TIGR03143 AhpF_homolog putativ 98.0 8.7E-06 1.9E-10 93.5 6.1 40 47-87 4-43 (555)
172 PRK08010 pyridine nucleotide-d 97.9 8.6E-06 1.9E-10 91.0 5.5 41 47-87 3-44 (441)
173 TIGR01316 gltA glutamate synth 97.9 1.2E-05 2.6E-10 90.0 6.6 41 47-87 133-173 (449)
174 PRK06116 glutathione reductase 97.9 8.1E-06 1.7E-10 91.5 5.1 39 47-86 4-42 (450)
175 PRK06467 dihydrolipoamide dehy 97.9 9.6E-06 2.1E-10 91.3 5.7 41 46-86 3-43 (471)
176 PRK12775 putative trifunctiona 97.9 1.1E-05 2.3E-10 98.3 6.2 41 47-87 430-470 (1006)
177 PRK05976 dihydrolipoamide dehy 97.9 1E-05 2.3E-10 91.2 5.6 41 46-87 3-43 (472)
178 PRK06416 dihydrolipoamide dehy 97.9 9.6E-06 2.1E-10 91.2 5.3 40 47-87 4-43 (462)
179 PLN02985 squalene monooxygenas 97.9 2.1E-05 4.5E-10 89.3 7.9 37 45-81 41-77 (514)
180 TIGR02360 pbenz_hydroxyl 4-hyd 97.9 1.1E-05 2.4E-10 88.6 5.3 35 47-81 2-36 (390)
181 KOG2614 Kynurenine 3-monooxyge 97.9 1.1E-05 2.4E-10 85.6 5.0 36 47-82 2-37 (420)
182 TIGR01790 carotene-cycl lycope 97.9 1E-05 2.2E-10 88.8 4.9 36 49-84 1-36 (388)
183 PRK07512 L-aspartate oxidase; 97.9 0.00017 3.7E-09 82.0 14.9 34 46-81 8-41 (513)
184 PTZ00188 adrenodoxin reductase 97.9 1.6E-05 3.5E-10 87.9 6.2 43 47-89 39-82 (506)
185 PF06039 Mqo: Malate:quinone o 97.9 0.00034 7.3E-09 76.0 16.0 40 46-85 2-43 (488)
186 PRK06370 mercuric reductase; V 97.9 1.3E-05 2.9E-10 90.1 5.6 40 46-86 4-43 (463)
187 PRK06292 dihydrolipoamide dehy 97.9 1.2E-05 2.7E-10 90.3 5.3 39 47-86 3-41 (460)
188 PRK12778 putative bifunctional 97.9 1.7E-05 3.7E-10 94.5 6.6 41 47-87 431-471 (752)
189 TIGR02028 ChlP geranylgeranyl 97.9 1.3E-05 2.9E-10 88.2 5.3 36 48-83 1-36 (398)
190 PRK12769 putative oxidoreducta 97.9 1.4E-05 3.1E-10 93.6 5.7 42 47-88 327-368 (654)
191 PRK12814 putative NADPH-depend 97.9 1.8E-05 3.9E-10 92.6 6.5 41 47-87 193-233 (652)
192 KOG0399 Glutamate synthase [Am 97.9 1.9E-05 4.2E-10 91.3 6.4 60 18-87 1766-1825(2142)
193 PRK07818 dihydrolipoamide dehy 97.9 1.6E-05 3.4E-10 89.6 5.7 40 47-87 4-43 (466)
194 PRK10262 thioredoxin reductase 97.9 1.7E-05 3.7E-10 84.7 5.7 41 46-87 5-45 (321)
195 PRK11749 dihydropyrimidine deh 97.8 2.2E-05 4.7E-10 88.2 6.3 41 47-87 140-180 (457)
196 PRK12837 3-ketosteroid-delta-1 97.8 1.8E-05 3.8E-10 90.1 5.6 39 47-86 7-45 (513)
197 PRK12810 gltD glutamate syntha 97.8 2.5E-05 5.3E-10 88.1 6.6 41 47-87 143-183 (471)
198 TIGR01372 soxA sarcosine oxida 97.8 2.1E-05 4.6E-10 96.1 6.4 42 47-88 163-204 (985)
199 KOG2404 Fumarate reductase, fl 97.8 0.00064 1.4E-08 69.7 15.7 38 49-86 11-48 (477)
200 PRK14694 putative mercuric red 97.8 2.1E-05 4.6E-10 88.6 5.6 41 46-87 5-45 (468)
201 PRK14727 putative mercuric red 97.8 2.6E-05 5.7E-10 88.0 6.1 41 47-87 16-56 (479)
202 TIGR02053 MerA mercuric reduct 97.8 2.3E-05 4.9E-10 88.2 5.3 38 48-86 1-38 (463)
203 PRK06567 putative bifunctional 97.8 2.8E-05 6E-10 91.9 5.9 39 47-85 383-421 (1028)
204 PRK12809 putative oxidoreducta 97.8 5E-05 1.1E-09 88.7 7.9 41 47-87 310-350 (639)
205 PLN02464 glycerol-3-phosphate 97.8 2.5E-05 5.4E-10 90.8 5.2 39 46-84 70-108 (627)
206 PRK05192 tRNA uridine 5-carbox 97.7 3.1E-05 6.7E-10 88.0 5.4 39 47-85 4-43 (618)
207 TIGR01318 gltD_gamma_fam gluta 97.7 4.1E-05 8.9E-10 86.1 6.3 42 47-88 141-182 (467)
208 PRK05335 tRNA (uracil-5-)-meth 97.7 3.4E-05 7.4E-10 84.0 5.4 37 47-83 2-38 (436)
209 PRK12844 3-ketosteroid-delta-1 97.7 3.5E-05 7.5E-10 88.5 5.8 40 47-86 6-45 (557)
210 PRK13748 putative mercuric red 97.7 3.1E-05 6.7E-10 89.3 5.3 40 47-87 98-137 (561)
211 TIGR01789 lycopene_cycl lycope 97.7 3.2E-05 6.9E-10 84.3 5.0 37 49-85 1-39 (370)
212 COG0492 TrxB Thioredoxin reduc 97.7 3.3E-05 7.1E-10 81.4 4.9 42 47-88 3-44 (305)
213 PRK06327 dihydrolipoamide dehy 97.7 3.4E-05 7.4E-10 87.0 5.4 32 47-78 4-35 (475)
214 PLN02815 L-aspartate oxidase 97.7 4.9E-05 1.1E-09 87.6 6.2 39 46-85 28-66 (594)
215 PTZ00058 glutathione reductase 97.7 4.6E-05 1E-09 87.1 5.9 40 47-87 48-87 (561)
216 KOG2844 Dimethylglycine dehydr 97.7 8.8E-05 1.9E-09 82.5 7.6 50 247-296 187-242 (856)
217 PTZ00052 thioredoxin reductase 97.7 4.2E-05 9.2E-10 86.7 5.3 32 47-78 5-36 (499)
218 TIGR01317 GOGAT_sm_gam glutama 97.7 6.1E-05 1.3E-09 85.1 6.5 41 47-87 143-183 (485)
219 PRK07843 3-ketosteroid-delta-1 97.6 5.3E-05 1.2E-09 87.1 5.7 41 46-86 6-46 (557)
220 COG3573 Predicted oxidoreducta 97.6 8.1E-05 1.8E-09 76.4 6.3 40 47-86 5-46 (552)
221 PTZ00367 squalene epoxidase; P 97.6 4.9E-05 1.1E-09 87.0 5.3 34 47-80 33-66 (567)
222 PRK08641 sdhA succinate dehydr 97.6 5E-05 1.1E-09 87.8 5.4 38 47-84 3-40 (589)
223 KOG2415 Electron transfer flav 97.6 4.1E-05 8.8E-10 80.7 4.0 43 46-88 75-123 (621)
224 PF04820 Trp_halogenase: Trypt 97.6 0.00029 6.2E-09 78.9 11.1 33 49-81 1-36 (454)
225 PRK07804 L-aspartate oxidase; 97.6 6.7E-05 1.5E-09 85.9 6.2 39 46-84 15-53 (541)
226 TIGR00137 gid_trmFO tRNA:m(5)U 97.6 5.6E-05 1.2E-09 82.8 5.1 37 48-84 1-37 (433)
227 PRK12771 putative glutamate sy 97.6 8.1E-05 1.8E-09 85.8 6.7 41 47-87 137-177 (564)
228 PLN02507 glutathione reductase 97.6 6E-05 1.3E-09 85.5 5.4 32 47-78 25-56 (499)
229 TIGR01812 sdhA_frdA_Gneg succi 97.6 6.5E-05 1.4E-09 86.7 5.2 37 49-85 1-37 (566)
230 PRK06452 sdhA succinate dehydr 97.6 6.9E-05 1.5E-09 86.3 5.3 38 47-84 5-42 (566)
231 PLN00128 Succinate dehydrogena 97.6 7.4E-05 1.6E-09 86.9 5.3 38 47-84 50-87 (635)
232 PRK07057 sdhA succinate dehydr 97.5 8.3E-05 1.8E-09 86.0 5.3 38 47-84 12-49 (591)
233 PF00732 GMC_oxred_N: GMC oxid 97.5 5.7E-05 1.2E-09 79.6 3.6 36 48-83 1-37 (296)
234 KOG2960 Protein involved in th 97.5 2.7E-05 5.9E-10 74.9 1.0 66 48-130 77-145 (328)
235 PRK12770 putative glutamate sy 97.5 0.00012 2.7E-09 79.2 6.3 41 47-87 18-58 (352)
236 PRK08401 L-aspartate oxidase; 97.5 8.9E-05 1.9E-09 83.4 5.3 33 48-80 2-34 (466)
237 PF07992 Pyr_redox_2: Pyridine 97.5 5.9E-05 1.3E-09 74.3 3.4 33 49-81 1-33 (201)
238 COG1249 Lpd Pyruvate/2-oxoglut 97.5 0.00012 2.7E-09 81.1 5.7 42 46-87 3-44 (454)
239 PF01134 GIDA: Glucose inhibit 97.5 7.6E-05 1.7E-09 80.5 3.7 40 49-88 1-41 (392)
240 PLN02546 glutathione reductase 97.5 0.00011 2.5E-09 83.9 5.3 32 47-78 79-110 (558)
241 PRK08626 fumarate reductase fl 97.5 0.00011 2.4E-09 85.8 5.2 38 47-84 5-42 (657)
242 PTZ00306 NADH-dependent fumara 97.5 0.00015 3.2E-09 90.1 6.5 41 46-86 408-448 (1167)
243 PF00070 Pyr_redox: Pyridine n 97.5 0.00019 4.1E-09 59.9 5.1 35 49-83 1-35 (80)
244 TIGR01423 trypano_reduc trypan 97.5 0.00012 2.7E-09 82.5 5.2 40 47-86 3-51 (486)
245 PRK13984 putative oxidoreducta 97.5 0.00017 3.6E-09 84.0 6.4 42 46-87 282-323 (604)
246 TIGR02462 pyranose_ox pyranose 97.4 0.00015 3.2E-09 82.2 5.0 37 48-84 1-37 (544)
247 COG2509 Uncharacterized FAD-de 97.4 0.0056 1.2E-07 66.2 16.4 41 256-296 187-229 (486)
248 PTZ00153 lipoamide dehydrogena 97.4 0.00018 3.8E-09 83.7 5.5 40 47-86 116-156 (659)
249 PRK09231 fumarate reductase fl 97.4 0.00016 3.4E-09 83.6 4.8 38 47-84 4-43 (582)
250 PRK08275 putative oxidoreducta 97.3 0.00019 4.1E-09 82.6 4.8 37 47-83 9-47 (554)
251 PRK09077 L-aspartate oxidase; 97.3 0.00025 5.3E-09 81.2 5.2 38 47-85 8-45 (536)
252 PRK06912 acoL dihydrolipoamide 97.3 0.00025 5.5E-09 79.6 5.1 37 49-86 2-38 (458)
253 PRK08255 salicylyl-CoA 5-hydro 97.3 0.00023 5.1E-09 84.8 5.0 34 48-81 1-36 (765)
254 PRK07845 flavoprotein disulfid 97.3 0.00028 6E-09 79.5 5.3 39 48-87 2-40 (466)
255 KOG1298 Squalene monooxygenase 97.3 0.00034 7.4E-09 73.4 5.4 34 46-79 44-77 (509)
256 PRK02106 choline dehydrogenase 97.3 0.00027 5.8E-09 81.5 5.2 35 46-80 4-39 (560)
257 TIGR01438 TGR thioredoxin and 97.3 0.00028 6.1E-09 79.7 5.1 33 47-79 2-34 (484)
258 PRK08205 sdhA succinate dehydr 97.2 0.00031 6.6E-09 81.3 5.1 37 47-84 5-41 (583)
259 PRK05329 anaerobic glycerol-3- 97.2 0.00034 7.4E-09 77.2 5.2 34 47-80 2-35 (422)
260 COG3075 GlpB Anaerobic glycero 97.2 0.00031 6.8E-09 72.3 4.4 32 47-78 2-33 (421)
261 TIGR01811 sdhA_Bsu succinate d 97.2 0.00029 6.3E-09 81.7 4.7 35 50-84 1-35 (603)
262 TIGR02061 aprA adenosine phosp 97.2 0.00037 8E-09 80.5 4.9 33 49-81 1-37 (614)
263 PF07156 Prenylcys_lyase: Pren 97.2 0.0055 1.2E-07 66.3 13.5 63 236-299 117-189 (368)
264 COG1053 SdhA Succinate dehydro 97.2 0.00041 8.8E-09 79.1 5.1 39 47-85 6-44 (562)
265 KOG1800 Ferredoxin/adrenodoxin 97.1 0.00055 1.2E-08 71.8 5.2 45 48-92 21-67 (468)
266 KOG1439 RAB proteins geranylge 97.1 0.0029 6.3E-08 67.1 10.3 44 47-90 4-47 (440)
267 KOG2665 Predicted FAD-dependen 97.0 0.00091 2E-08 68.5 5.6 42 42-83 43-86 (453)
268 COG5044 MRS6 RAB proteins gera 97.0 0.039 8.3E-07 58.2 16.8 241 47-294 6-281 (434)
269 PRK13800 putative oxidoreducta 96.9 0.0009 1.9E-08 81.3 5.1 35 47-81 13-47 (897)
270 KOG2853 Possible oxidoreductas 96.9 0.00085 1.8E-08 69.3 4.0 35 47-81 86-124 (509)
271 PRK04965 NADH:flavorubredoxin 96.9 0.0052 1.1E-07 67.2 10.6 40 256-295 197-237 (377)
272 TIGR01350 lipoamide_DH dihydro 96.9 0.0059 1.3E-07 68.7 11.1 34 48-81 171-204 (461)
273 PRK13512 coenzyme A disulfide 96.9 0.0011 2.5E-08 73.9 5.2 36 48-83 2-39 (438)
274 KOG2852 Possible oxidoreductas 96.8 0.00051 1.1E-08 69.5 1.5 39 46-84 9-53 (380)
275 TIGR01810 betA choline dehydro 96.8 0.00096 2.1E-08 76.5 3.9 32 49-80 1-33 (532)
276 PRK09564 coenzyme A disulfide 96.8 0.0013 2.9E-08 73.4 4.8 36 48-83 1-38 (444)
277 COG2303 BetA Choline dehydroge 96.8 0.0013 2.8E-08 75.3 4.7 35 45-79 5-39 (542)
278 TIGR03378 glycerol3P_GlpB glyc 96.8 0.0015 3.3E-08 71.4 5.0 33 48-80 1-33 (419)
279 PLN02785 Protein HOTHEAD 96.7 0.0018 3.9E-08 74.7 5.7 35 45-80 53-87 (587)
280 PRK07846 mycothione reductase; 96.7 0.011 2.4E-07 66.3 11.8 34 48-81 167-200 (451)
281 COG4716 Myosin-crossreactive a 96.7 0.0045 9.7E-08 64.9 7.8 42 47-88 22-67 (587)
282 TIGR03452 mycothione_red mycot 96.7 0.0017 3.7E-08 72.8 5.3 37 47-86 2-38 (452)
283 TIGR03197 MnmC_Cterm tRNA U-34 96.7 0.011 2.3E-07 64.8 11.2 52 247-298 135-191 (381)
284 PRK09754 phenylpropionate diox 96.7 0.002 4.4E-08 70.9 5.2 37 47-83 3-41 (396)
285 PRK06416 dihydrolipoamide dehy 96.7 0.016 3.5E-07 65.1 12.6 35 48-82 173-207 (462)
286 PTZ00318 NADH dehydrogenase-li 96.6 0.002 4.3E-08 71.6 5.1 38 44-81 7-44 (424)
287 PRK07846 mycothione reductase; 96.6 0.0019 4.2E-08 72.3 4.9 36 48-86 2-37 (451)
288 PRK05249 soluble pyridine nucl 96.6 0.016 3.6E-07 65.1 12.4 35 48-82 176-210 (461)
289 KOG1335 Dihydrolipoamide dehyd 96.6 0.002 4.3E-08 67.8 4.5 42 46-87 38-79 (506)
290 TIGR03452 mycothione_red mycot 96.6 0.016 3.6E-07 64.9 11.9 40 256-295 223-263 (452)
291 COG0446 HcaD Uncharacterized N 96.5 0.0029 6.3E-08 69.5 4.9 39 48-86 137-175 (415)
292 PF13434 K_oxygenase: L-lysine 96.4 0.0034 7.3E-08 67.6 4.9 35 47-81 2-37 (341)
293 COG1206 Gid NAD(FAD)-utilizing 96.3 0.0036 7.8E-08 64.7 3.6 34 48-81 4-37 (439)
294 PRK06116 glutathione reductase 96.2 0.025 5.4E-07 63.4 10.8 34 48-81 168-201 (450)
295 PLN02507 glutathione reductase 96.2 0.037 8E-07 62.9 12.2 40 256-295 258-298 (499)
296 COG4529 Uncharacterized protei 95.8 0.0099 2.1E-07 65.1 4.8 38 47-85 1-42 (474)
297 COG0029 NadB Aspartate oxidase 95.7 0.0074 1.6E-07 66.0 3.4 32 49-81 9-40 (518)
298 PRK04965 NADH:flavorubredoxin 95.6 0.015 3.3E-07 63.5 5.2 33 48-80 3-37 (377)
299 COG1252 Ndh NADH dehydrogenase 95.5 0.016 3.5E-07 63.1 5.0 35 47-81 3-39 (405)
300 TIGR03169 Nterm_to_SelD pyridi 95.4 0.014 2.9E-07 63.5 4.1 33 49-81 1-36 (364)
301 TIGR02352 thiamin_ThiO glycine 95.3 0.49 1.1E-05 50.3 15.7 43 256-298 151-194 (337)
302 PRK09754 phenylpropionate diox 95.1 0.025 5.4E-07 62.3 5.0 36 48-83 145-180 (396)
303 KOG4716 Thioredoxin reductase 95.0 0.021 4.5E-07 59.3 3.8 33 46-78 18-50 (503)
304 PRK01438 murD UDP-N-acetylmura 95.0 0.027 5.9E-07 63.7 5.1 34 48-81 17-50 (480)
305 KOG0405 Pyridine nucleotide-di 94.9 0.037 8E-07 57.8 5.1 43 45-87 18-60 (478)
306 PRK02705 murD UDP-N-acetylmura 94.7 0.031 6.6E-07 62.9 4.5 34 49-82 2-35 (459)
307 PF01210 NAD_Gly3P_dh_N: NAD-d 94.7 0.035 7.5E-07 52.8 4.0 32 49-80 1-32 (157)
308 PRK14989 nitrite reductase sub 94.6 0.039 8.5E-07 66.4 5.1 36 48-83 4-43 (847)
309 PRK07251 pyridine nucleotide-d 94.6 0.045 9.8E-07 61.1 5.3 35 48-82 158-192 (438)
310 COG0445 GidA Flavin-dependent 94.6 0.041 8.8E-07 61.0 4.7 47 47-93 4-50 (621)
311 KOG0404 Thioredoxin reductase 94.3 0.1 2.2E-06 51.4 6.4 43 47-89 8-54 (322)
312 TIGR02374 nitri_red_nirB nitri 94.2 0.045 9.7E-07 65.7 4.6 47 249-295 188-236 (785)
313 PRK05976 dihydrolipoamide dehy 94.2 0.055 1.2E-06 61.1 5.0 35 48-82 181-215 (472)
314 KOG3855 Monooxygenase involved 94.1 0.049 1.1E-06 58.3 4.0 35 46-80 35-73 (481)
315 PF02737 3HCDH_N: 3-hydroxyacy 93.8 0.074 1.6E-06 51.8 4.5 32 49-80 1-32 (180)
316 TIGR02053 MerA mercuric reduct 93.8 0.075 1.6E-06 59.8 5.1 35 48-82 167-201 (463)
317 PF03721 UDPG_MGDP_dh_N: UDP-g 93.8 0.056 1.2E-06 52.8 3.5 33 48-80 1-33 (185)
318 KOG1238 Glucose dehydrogenase/ 93.7 0.061 1.3E-06 61.0 4.1 38 45-82 55-93 (623)
319 PRK06912 acoL dihydrolipoamide 93.4 0.098 2.1E-06 58.8 5.3 35 48-82 171-205 (458)
320 KOG3923 D-aspartate oxidase [A 93.4 0.057 1.2E-06 55.4 2.9 32 47-78 3-41 (342)
321 PRK06370 mercuric reductase; V 93.4 0.096 2.1E-06 58.9 5.2 36 48-83 172-207 (463)
322 TIGR01421 gluta_reduc_1 glutat 93.4 0.1 2.2E-06 58.6 5.3 35 48-82 167-201 (450)
323 PRK06467 dihydrolipoamide dehy 93.4 0.099 2.1E-06 59.0 5.2 35 48-82 175-209 (471)
324 PRK06115 dihydrolipoamide dehy 93.4 0.1 2.2E-06 58.8 5.3 35 48-82 175-209 (466)
325 COG3634 AhpF Alkyl hydroperoxi 93.4 0.05 1.1E-06 56.8 2.4 40 45-86 209-248 (520)
326 COG1249 Lpd Pyruvate/2-oxoglut 93.2 0.11 2.5E-06 57.8 5.3 35 48-82 174-208 (454)
327 PF01262 AlaDh_PNT_C: Alanine 93.2 0.12 2.6E-06 49.7 4.8 33 48-80 21-53 (168)
328 PRK06292 dihydrolipoamide dehy 93.2 0.11 2.5E-06 58.2 5.3 35 48-82 170-204 (460)
329 KOG0042 Glycerol-3-phosphate d 93.2 0.029 6.2E-07 61.8 0.4 39 46-84 66-104 (680)
330 TIGR03385 CoA_CoA_reduc CoA-di 93.2 0.12 2.5E-06 57.5 5.3 35 48-82 138-172 (427)
331 PRK13512 coenzyme A disulfide 93.1 0.1 2.3E-06 58.2 4.8 36 48-83 149-184 (438)
332 KOG3851 Sulfide:quinone oxidor 93.1 0.064 1.4E-06 55.5 2.7 62 20-81 12-75 (446)
333 PRK14106 murD UDP-N-acetylmura 93.1 0.11 2.4E-06 58.1 5.0 34 47-80 5-38 (450)
334 PRK07818 dihydrolipoamide dehy 93.1 0.11 2.4E-06 58.5 5.0 35 48-82 173-207 (466)
335 PF02558 ApbA: Ketopantoate re 93.0 0.13 2.9E-06 48.1 4.7 31 50-80 1-31 (151)
336 PRK06327 dihydrolipoamide dehy 92.8 0.13 2.8E-06 58.1 5.1 35 48-82 184-218 (475)
337 PF13738 Pyr_redox_3: Pyridine 92.8 0.12 2.5E-06 50.8 4.1 34 47-80 167-200 (203)
338 PRK06129 3-hydroxyacyl-CoA deh 92.8 0.12 2.6E-06 54.9 4.4 33 48-80 3-35 (308)
339 PF13434 K_oxygenase: L-lysine 92.5 1.3 2.7E-05 47.8 11.9 39 256-294 293-338 (341)
340 COG0569 TrkA K+ transport syst 92.5 0.15 3.2E-06 51.5 4.5 67 48-130 1-67 (225)
341 PRK09564 coenzyme A disulfide 92.4 0.17 3.8E-06 56.5 5.3 34 48-81 150-183 (444)
342 TIGR02374 nitri_red_nirB nitri 92.3 0.15 3.2E-06 61.3 4.9 36 48-83 141-176 (785)
343 COG0686 Ald Alanine dehydrogen 92.1 0.16 3.4E-06 52.6 4.1 46 47-92 168-221 (371)
344 PRK07845 flavoprotein disulfid 92.0 0.2 4.4E-06 56.4 5.3 36 48-83 178-213 (466)
345 KOG2755 Oxidoreductase [Genera 92.0 0.095 2.1E-06 52.9 2.2 33 49-81 1-35 (334)
346 TIGR03140 AhpF alkyl hydropero 92.0 0.18 4E-06 57.5 4.9 33 48-80 353-385 (515)
347 cd01080 NAD_bind_m-THF_DH_Cycl 91.8 0.24 5.3E-06 47.5 4.8 34 46-79 43-77 (168)
348 PRK08293 3-hydroxybutyryl-CoA 91.8 0.19 4.1E-06 52.8 4.5 33 48-80 4-36 (287)
349 TIGR01470 cysG_Nterm siroheme 91.7 0.25 5.3E-06 49.2 4.9 33 48-80 10-42 (205)
350 PRK09260 3-hydroxybutyryl-CoA 91.6 0.2 4.4E-06 52.5 4.4 33 48-80 2-34 (288)
351 PTZ00058 glutathione reductase 91.6 0.22 4.8E-06 57.3 5.0 36 47-82 237-272 (561)
352 PRK06249 2-dehydropantoate 2-r 91.6 0.26 5.6E-06 52.4 5.2 34 47-80 5-38 (313)
353 PTZ00153 lipoamide dehydrogena 91.6 0.22 4.8E-06 58.2 5.1 36 48-83 313-348 (659)
354 PRK14989 nitrite reductase sub 91.6 0.2 4.4E-06 60.4 4.8 36 48-83 146-181 (847)
355 KOG2311 NAD/FAD-utilizing prot 91.5 0.26 5.6E-06 53.8 5.0 43 45-87 26-68 (679)
356 PRK07819 3-hydroxybutyryl-CoA 91.5 0.21 4.6E-06 52.4 4.4 33 48-80 6-38 (286)
357 TIGR01424 gluta_reduc_2 glutat 91.5 0.24 5.3E-06 55.4 5.2 41 255-295 220-261 (446)
358 PRK05708 2-dehydropantoate 2-r 91.2 0.28 6.1E-06 52.0 5.0 33 47-79 2-34 (305)
359 PRK07066 3-hydroxybutyryl-CoA 91.2 0.24 5.2E-06 52.7 4.5 33 48-80 8-40 (321)
360 TIGR01316 gltA glutamate synth 91.1 0.26 5.7E-06 55.2 5.0 33 48-80 273-305 (449)
361 PRK15317 alkyl hydroperoxide r 91.1 0.25 5.5E-06 56.4 4.9 33 48-80 352-384 (517)
362 PRK10262 thioredoxin reductase 91.0 0.29 6.3E-06 52.1 4.9 33 48-80 147-179 (321)
363 PRK07530 3-hydroxybutyryl-CoA 90.9 0.33 7.1E-06 51.0 5.2 33 48-80 5-37 (292)
364 PF01488 Shikimate_DH: Shikima 90.8 0.43 9.4E-06 44.0 5.3 33 47-79 12-45 (135)
365 PRK08010 pyridine nucleotide-d 90.8 0.29 6.4E-06 54.7 5.0 35 48-82 159-193 (441)
366 PRK04690 murD UDP-N-acetylmura 90.8 0.26 5.7E-06 55.5 4.6 34 48-81 9-42 (468)
367 PRK06522 2-dehydropantoate 2-r 90.7 0.29 6.3E-06 51.5 4.6 31 49-79 2-32 (304)
368 COG0771 MurD UDP-N-acetylmuram 90.7 0.25 5.4E-06 54.7 4.2 36 47-82 7-42 (448)
369 TIGR03143 AhpF_homolog putativ 90.5 0.28 6.1E-06 56.5 4.6 34 48-81 144-177 (555)
370 COG1004 Ugd Predicted UDP-gluc 90.5 0.3 6.5E-06 52.5 4.3 33 48-80 1-33 (414)
371 PRK12921 2-dehydropantoate 2-r 90.4 0.33 7.2E-06 51.2 4.7 31 48-78 1-31 (305)
372 PRK08229 2-dehydropantoate 2-r 90.4 0.33 7.3E-06 52.1 4.8 32 48-79 3-34 (341)
373 PRK04148 hypothetical protein; 90.4 0.27 5.8E-06 45.1 3.4 33 48-81 18-50 (134)
374 PRK12831 putative oxidoreducta 90.2 0.35 7.5E-06 54.5 4.9 34 47-80 281-314 (464)
375 PRK12770 putative glutamate sy 90.2 0.36 7.9E-06 52.2 4.9 33 48-80 173-206 (352)
376 PF13241 NAD_binding_7: Putati 90.2 0.27 5.7E-06 43.1 3.1 33 47-79 7-39 (103)
377 PLN02546 glutathione reductase 90.1 0.37 8E-06 55.5 5.1 35 48-82 253-287 (558)
378 TIGR01763 MalateDH_bact malate 90.1 0.41 8.9E-06 50.7 5.0 33 48-80 2-35 (305)
379 cd05292 LDH_2 A subgroup of L- 90.0 0.38 8.3E-06 51.0 4.7 33 48-80 1-35 (308)
380 TIGR00518 alaDH alanine dehydr 90.0 0.41 8.8E-06 52.2 5.0 33 48-80 168-200 (370)
381 COG1748 LYS9 Saccharopine dehy 89.9 0.47 1E-05 51.5 5.3 45 48-92 2-55 (389)
382 TIGR01292 TRX_reduct thioredox 89.9 0.4 8.7E-06 50.0 4.8 33 48-80 142-174 (300)
383 PRK01710 murD UDP-N-acetylmura 89.8 0.38 8.2E-06 54.1 4.8 33 48-80 15-47 (458)
384 PRK06035 3-hydroxyacyl-CoA deh 89.8 0.36 7.7E-06 50.8 4.3 33 48-80 4-36 (291)
385 PRK06718 precorrin-2 dehydroge 89.7 0.49 1.1E-05 46.9 4.9 33 47-79 10-42 (202)
386 TIGR01423 trypano_reduc trypan 89.7 0.41 9E-06 54.2 5.0 35 48-82 188-225 (486)
387 PRK05808 3-hydroxybutyryl-CoA 89.7 0.4 8.8E-06 50.1 4.6 33 48-80 4-36 (282)
388 PRK11064 wecC UDP-N-acetyl-D-m 89.4 0.41 8.8E-06 53.1 4.5 33 48-80 4-36 (415)
389 PRK04308 murD UDP-N-acetylmura 89.3 0.49 1.1E-05 52.9 5.2 34 48-81 6-39 (445)
390 PRK06719 precorrin-2 dehydroge 89.2 0.54 1.2E-05 44.6 4.6 31 47-77 13-43 (157)
391 TIGR02354 thiF_fam2 thiamine b 89.2 0.52 1.1E-05 46.6 4.7 33 47-79 21-54 (200)
392 PRK13748 putative mercuric red 89.2 0.48 1E-05 54.7 5.1 32 48-79 271-302 (561)
393 PRK03369 murD UDP-N-acetylmura 89.1 0.46 9.9E-06 53.9 4.8 32 48-79 13-44 (488)
394 PRK14694 putative mercuric red 88.9 0.55 1.2E-05 53.0 5.3 40 256-295 232-271 (468)
395 PLN02545 3-hydroxybutyryl-CoA 88.9 0.59 1.3E-05 49.2 5.1 33 48-80 5-37 (295)
396 PRK14619 NAD(P)H-dependent gly 88.8 0.62 1.3E-05 49.4 5.3 34 47-80 4-37 (308)
397 PRK14727 putative mercuric red 88.7 0.54 1.2E-05 53.2 5.1 41 255-295 241-281 (479)
398 PTZ00052 thioredoxin reductase 88.7 0.57 1.2E-05 53.3 5.2 31 48-78 183-213 (499)
399 TIGR03026 NDP-sugDHase nucleot 88.6 0.44 9.5E-06 52.8 4.1 33 49-81 2-34 (411)
400 PRK02472 murD UDP-N-acetylmura 88.5 0.54 1.2E-05 52.6 4.8 33 48-80 6-38 (447)
401 PRK06130 3-hydroxybutyryl-CoA 88.4 0.62 1.3E-05 49.4 5.0 33 48-80 5-37 (311)
402 PRK00094 gpsA NAD(P)H-dependen 88.4 0.6 1.3E-05 49.7 4.9 33 48-80 2-34 (325)
403 TIGR01438 TGR thioredoxin and 88.2 0.54 1.2E-05 53.3 4.5 31 48-78 181-211 (484)
404 PRK01368 murD UDP-N-acetylmura 87.9 0.54 1.2E-05 52.7 4.3 31 48-79 7-37 (454)
405 PTZ00318 NADH dehydrogenase-li 87.8 0.63 1.4E-05 51.7 4.8 35 48-82 174-222 (424)
406 PRK14618 NAD(P)H-dependent gly 87.8 0.7 1.5E-05 49.4 4.9 33 48-80 5-37 (328)
407 PF03446 NAD_binding_2: NAD bi 87.7 0.7 1.5E-05 44.0 4.4 33 48-80 2-34 (163)
408 PRK09424 pntA NAD(P) transhydr 87.7 0.71 1.5E-05 52.2 5.1 34 47-80 165-198 (509)
409 PRK00421 murC UDP-N-acetylmura 87.5 0.57 1.2E-05 52.7 4.3 34 48-81 8-42 (461)
410 PRK11749 dihydropyrimidine deh 87.5 0.72 1.5E-05 51.8 5.0 34 47-80 273-307 (457)
411 TIGR03862 flavo_PP4765 unchara 87.1 1.6 3.4E-05 47.6 7.2 57 239-297 77-141 (376)
412 TIGR01318 gltD_gamma_fam gluta 86.9 1.4 3E-05 49.7 6.9 34 47-80 282-316 (467)
413 PRK02006 murD UDP-N-acetylmura 86.8 0.73 1.6E-05 52.4 4.7 33 48-80 8-40 (498)
414 COG3634 AhpF Alkyl hydroperoxi 86.8 0.51 1.1E-05 49.6 2.9 33 47-79 354-386 (520)
415 PRK08306 dipicolinate synthase 86.8 0.91 2E-05 47.9 5.0 34 47-80 152-185 (296)
416 cd05311 NAD_bind_2_malic_enz N 86.7 0.97 2.1E-05 45.7 4.9 32 48-79 26-60 (226)
417 PRK12778 putative bifunctional 86.6 0.82 1.8E-05 54.8 5.1 33 48-80 571-604 (752)
418 KOG4405 GDP dissociation inhib 86.5 0.72 1.6E-05 49.5 3.9 46 47-92 8-53 (547)
419 PRK14620 NAD(P)H-dependent gly 86.4 0.86 1.9E-05 48.7 4.7 31 49-79 2-32 (326)
420 cd01075 NAD_bind_Leu_Phe_Val_D 86.3 1 2.2E-05 44.5 4.8 33 48-80 29-61 (200)
421 TIGR02279 PaaC-3OHAcCoADH 3-hy 86.3 0.84 1.8E-05 51.8 4.7 33 48-80 6-38 (503)
422 cd05191 NAD_bind_amino_acid_DH 86.3 1.3 2.8E-05 37.3 4.7 31 48-78 24-55 (86)
423 PRK00141 murD UDP-N-acetylmura 86.2 0.86 1.9E-05 51.5 4.8 32 48-79 16-47 (473)
424 COG1893 ApbA Ketopantoate redu 86.0 0.88 1.9E-05 48.2 4.4 34 48-81 1-34 (307)
425 cd00401 AdoHcyase S-adenosyl-L 85.9 1 2.2E-05 49.6 4.9 33 48-80 203-235 (413)
426 PRK12549 shikimate 5-dehydroge 85.8 1 2.2E-05 47.2 4.8 33 48-80 128-161 (284)
427 PRK07417 arogenate dehydrogena 85.7 0.94 2E-05 47.3 4.4 32 49-80 2-33 (279)
428 PTZ00082 L-lactate dehydrogena 85.7 1.1 2.5E-05 47.7 5.1 35 47-81 6-41 (321)
429 PRK06223 malate dehydrogenase; 85.7 1.1 2.3E-05 47.5 4.9 33 48-80 3-36 (307)
430 PRK08268 3-hydroxy-acyl-CoA de 85.6 0.94 2E-05 51.5 4.7 34 48-81 8-41 (507)
431 PLN02353 probable UDP-glucose 85.5 0.94 2E-05 50.9 4.5 33 48-80 2-36 (473)
432 PRK15057 UDP-glucose 6-dehydro 85.5 1 2.2E-05 49.5 4.6 31 49-80 2-32 (388)
433 COG1252 Ndh NADH dehydrogenase 85.2 0.48 1E-05 51.8 1.9 38 256-296 223-261 (405)
434 PRK07531 bifunctional 3-hydrox 85.0 0.97 2.1E-05 51.3 4.4 33 48-80 5-37 (495)
435 PRK11199 tyrA bifunctional cho 85.0 1.6 3.5E-05 47.6 6.0 32 48-79 99-131 (374)
436 TIGR02853 spore_dpaA dipicolin 84.8 1.3 2.8E-05 46.5 4.9 33 48-80 152-184 (287)
437 PRK11730 fadB multifunctional 84.7 0.91 2E-05 54.0 4.2 33 48-80 314-346 (715)
438 PF02254 TrkA_N: TrkA-N domain 84.6 1.5 3.3E-05 38.8 4.7 62 50-129 1-62 (116)
439 PF00899 ThiF: ThiF family; I 84.3 1.1 2.3E-05 41.2 3.6 32 47-78 2-34 (135)
440 PRK00683 murD UDP-N-acetylmura 84.2 1.2 2.6E-05 49.5 4.6 33 48-80 4-36 (418)
441 PF00056 Ldh_1_N: lactate/mala 84.2 1.6 3.6E-05 40.5 4.9 33 48-80 1-36 (141)
442 PRK01390 murD UDP-N-acetylmura 84.1 1.1 2.4E-05 50.4 4.4 32 48-79 10-41 (460)
443 PRK05675 sdhA succinate dehydr 84.1 18 0.00038 42.0 14.3 40 256-295 140-187 (570)
444 cd05291 HicDH_like L-2-hydroxy 84.0 1.4 2.9E-05 46.8 4.7 32 49-80 2-35 (306)
445 TIGR02437 FadB fatty oxidation 83.9 1.2 2.5E-05 53.0 4.6 34 47-80 313-346 (714)
446 TIGR00561 pntA NAD(P) transhyd 83.9 1.4 3.1E-05 49.7 5.0 33 48-80 165-197 (511)
447 PRK03803 murD UDP-N-acetylmura 83.8 1.2 2.6E-05 49.9 4.5 33 48-80 7-39 (448)
448 COG1250 FadB 3-hydroxyacyl-CoA 83.4 1.3 2.8E-05 46.7 4.1 32 48-79 4-35 (307)
449 TIGR01915 npdG NADPH-dependent 83.1 1.6 3.4E-05 43.8 4.5 31 48-78 1-32 (219)
450 PRK07688 thiamine/molybdopteri 83.1 1.7 3.6E-05 46.8 5.0 32 47-78 24-56 (339)
451 PRK15116 sulfur acceptor prote 83.0 1.6 3.6E-05 45.1 4.7 33 47-79 30-63 (268)
452 TIGR00507 aroE shikimate 5-deh 83.0 1.7 3.6E-05 45.2 4.8 33 47-79 117-149 (270)
453 KOG1335 Dihydrolipoamide dehyd 83.0 0.64 1.4E-05 49.6 1.6 37 48-84 212-248 (506)
454 PRK12475 thiamine/molybdopteri 82.8 1.6 3.6E-05 46.8 4.8 32 48-79 25-57 (338)
455 PRK12779 putative bifunctional 82.7 1.5 3.2E-05 53.7 4.9 33 48-80 448-480 (944)
456 TIGR00936 ahcY adenosylhomocys 82.5 1.7 3.7E-05 47.7 4.8 34 47-80 195-228 (406)
457 PRK03815 murD UDP-N-acetylmura 82.5 1.4 3E-05 48.7 4.2 30 49-79 2-31 (401)
458 TIGR02441 fa_ox_alpha_mit fatt 82.5 1.3 2.7E-05 52.9 4.1 34 47-80 335-368 (737)
459 KOG2495 NADH-dehydrogenase (ub 82.5 0.63 1.4E-05 50.4 1.4 74 9-82 180-267 (491)
460 KOG2304 3-hydroxyacyl-CoA dehy 82.4 1.3 2.9E-05 43.8 3.5 35 46-80 10-44 (298)
461 cd01078 NAD_bind_H4MPT_DH NADP 82.3 2 4.3E-05 42.1 4.8 32 48-79 29-61 (194)
462 PRK03806 murD UDP-N-acetylmura 82.1 1.7 3.6E-05 48.6 4.7 33 48-80 7-39 (438)
463 PRK12548 shikimate 5-dehydroge 82.1 2.1 4.6E-05 44.9 5.2 33 48-80 127-160 (289)
464 PLN02172 flavin-containing mon 82.0 1.4 2.9E-05 49.6 4.0 33 47-79 204-236 (461)
465 PTZ00117 malate dehydrogenase; 82.0 2 4.3E-05 45.8 5.1 34 47-80 5-39 (319)
466 TIGR02356 adenyl_thiF thiazole 81.7 2.2 4.7E-05 42.3 4.9 32 47-78 21-53 (202)
467 PF01494 FAD_binding_3: FAD bi 81.6 2.9 6.3E-05 44.4 6.2 44 256-299 125-174 (356)
468 PRK12814 putative NADPH-depend 81.6 1.8 4E-05 50.9 5.0 39 454-494 467-505 (652)
469 PRK08644 thiamine biosynthesis 81.5 2.3 5.1E-05 42.4 5.1 32 48-79 29-61 (212)
470 TIGR02440 FadJ fatty oxidation 81.5 1.9 4.1E-05 51.2 5.1 34 47-80 304-338 (699)
471 cd01065 NAD_bind_Shikimate_DH 81.4 2.3 5.1E-05 39.7 4.8 33 48-80 20-53 (155)
472 cd01339 LDH-like_MDH L-lactate 81.4 1.7 3.8E-05 45.8 4.3 31 50-80 1-32 (300)
473 TIGR01505 tartro_sem_red 2-hyd 81.3 1.7 3.7E-05 45.6 4.2 32 49-80 1-32 (291)
474 cd01487 E1_ThiF_like E1_ThiF_l 81.2 2.4 5.1E-05 41.0 4.8 31 49-79 1-32 (174)
475 PF13478 XdhC_C: XdhC Rossmann 80.8 1.7 3.8E-05 40.1 3.6 31 50-80 1-31 (136)
476 COG4529 Uncharacterized protei 80.7 42 0.00092 37.4 14.6 60 16-80 170-231 (474)
477 PRK11154 fadJ multifunctional 80.4 1.8 3.9E-05 51.4 4.5 34 47-80 309-343 (708)
478 PRK00066 ldh L-lactate dehydro 80.4 2.5 5.4E-05 45.0 5.1 34 47-80 6-41 (315)
479 PRK09496 trkA potassium transp 80.4 2.1 4.6E-05 47.8 4.9 34 48-81 1-34 (453)
480 PRK05562 precorrin-2 dehydroge 80.3 2.4 5.3E-05 42.5 4.7 31 47-77 25-55 (223)
481 cd05293 LDH_1 A subgroup of L- 80.3 2.6 5.5E-05 44.8 5.1 33 48-80 4-38 (312)
482 TIGR01087 murD UDP-N-acetylmur 80.3 1.9 4.1E-05 48.0 4.4 32 49-80 1-32 (433)
483 PF00670 AdoHcyase_NAD: S-aden 80.3 2 4.3E-05 40.8 3.8 33 48-80 24-56 (162)
484 PRK12810 gltD glutamate syntha 80.1 2.3 4.9E-05 48.0 5.0 38 454-493 431-468 (471)
485 PRK14573 bifunctional D-alanyl 79.8 2 4.4E-05 51.9 4.7 34 48-81 5-39 (809)
486 PRK05476 S-adenosyl-L-homocyst 79.7 2.4 5.2E-05 46.9 4.8 33 48-80 213-245 (425)
487 PRK12769 putative oxidoreducta 79.6 4.3 9.2E-05 47.9 7.2 36 454-491 618-653 (654)
488 PRK06452 sdhA succinate dehydr 79.4 38 0.00083 39.2 14.8 41 256-296 150-197 (566)
489 TIGR01317 GOGAT_sm_gam glutama 79.2 2.6 5.7E-05 47.7 5.1 37 454-492 445-481 (485)
490 TIGR02964 xanthine_xdhC xanthi 79.1 2.8 6.1E-05 42.9 4.8 35 47-81 100-134 (246)
491 PRK00258 aroE shikimate 5-dehy 79.0 2.8 6.2E-05 43.7 4.9 33 48-80 124-157 (278)
492 PRK15461 NADH-dependent gamma- 78.9 2.4 5.3E-05 44.6 4.4 33 48-80 2-34 (296)
493 cd01483 E1_enzyme_family Super 78.7 3 6.6E-05 38.6 4.6 31 49-79 1-32 (143)
494 TIGR02355 moeB molybdopterin s 78.5 3.2 6.9E-05 42.3 5.0 32 47-78 24-56 (240)
495 PRK11559 garR tartronate semia 78.5 2.7 5.8E-05 44.2 4.6 33 48-80 3-35 (296)
496 TIGR01790 carotene-cycl lycope 78.3 1.1E+02 0.0023 33.3 20.1 41 256-297 99-141 (388)
497 PLN02494 adenosylhomocysteinas 78.2 3 6.6E-05 46.4 5.0 34 47-80 254-287 (477)
498 PRK05690 molybdopterin biosynt 77.8 3.2 6.9E-05 42.5 4.7 32 47-78 32-64 (245)
499 TIGR01809 Shik-DH-AROM shikima 77.4 3.4 7.3E-05 43.3 4.9 32 48-79 126-158 (282)
500 COG0281 SfcA Malic enzyme [Ene 77.3 3.3 7.1E-05 45.0 4.8 32 48-79 200-234 (432)
No 1
>PLN03000 amine oxidase
Probab=100.00 E-value=3.7e-113 Score=977.31 Aligned_cols=667 Identities=76% Similarity=1.235 Sum_probs=600.0
Q ss_pred CCcccchhhHHHHHHHHHHHHHhhhhccccccchhccCCCCCCCCCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 005607 2 FTESVPKHCHSLLDSAYNYLVSNGYINFGVAPEIKEKIPVEPSSNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (688)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~in~g~~~~~~~~~p~~~~~~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~r 81 (688)
++..|+.+|.+|+..+|+||++|||||+|.+.......+... ...+|+|||||++||+||+.|.+.|++|+|||++++
T Consensus 141 a~~~~~~~~~~l~~~~~~~L~r~G~in~g~~~~~~~~~~~~~--~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~r 218 (881)
T PLN03000 141 FLGSIPKHCSSLLDSAYNYLVTHGYINFGIAQAIKDKFPAQS--SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKR 218 (881)
T ss_pred HhhhcchhHHHHHHHHHHHHHHcCcccHHHHHHHHhhccccC--CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCc
Confidence 457788999999999999999999999999988766554432 248999999999999999999999999999999999
Q ss_pred CcceeeeeecCCCCCCCCceeeeccceeecCCCCcHHHHHHHHhCCceeeecCCccEEecCCcccChhhhHHHHHHHHHH
Q 005607 82 AGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSLLHKVRDKCPLYRLDGNSVDPEIDMKVEADFNRL 161 (688)
Q Consensus 82 vGGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~LGl~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~l 161 (688)
+|||++|.+..+. ..++.+|+|++|+++.+.|++..|++++|++.+.....+++|..+|+.++...+..+...+..+
T Consensus 219 iGGRi~T~~~~g~---~~~~~~DlGas~i~g~~~npl~~L~~qlgl~l~~~~~~~~ly~~~Gk~v~~~~~~~ve~~fn~l 295 (881)
T PLN03000 219 PGGRVYTKKMEAN---RVGAAADLGGSVLTGTLGNPLGIIARQLGSSLYKVRDKCPLYRVDGKPVDPDVDLKVEVAFNQL 295 (881)
T ss_pred CCCCcceecccCC---CCceEeecCCeEEeCCCccHHHHHHHHcCCceeecCCCCeEEEeCCcCCchhhhhhHHHHHHHH
Confidence 9999999987653 2346899999999999999999999999999888877888899999998776666666777888
Q ss_pred HHHHHHHHHHhhccccCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhhhccccchhhhHHHhhccCCCCCCCCCeee
Q 005607 162 LDKASRLRQLMGEVAMDVSLGSALETFWRVYWDSGNAEAMNLFNWHLANLEYANASLLSKLSLAFWDQDDPYDMGGDHCF 241 (688)
Q Consensus 162 l~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~~~~ 241 (688)
++.+.+++...+....+.++.++++.+.++......++.+.++.|++..+++.++..++.++..+|.+...+..++.+++
T Consensus 296 Ld~~~~lr~l~~~~~~D~SLg~aLe~~~~~~g~~~t~e~~~Ll~w~lanLE~~~as~ls~LSl~~wdqd~~~e~~G~~~~ 375 (881)
T PLN03000 296 LDKASKLRQLMGDVSMDVSLGAALETFRQVSGNDVATEEMGLFNWHLANLEYANAGLVSKLSLAFWDQDDPYDMGGDHCF 375 (881)
T ss_pred HHHHHHHHHHhcccCcCCcHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHhcccccCHHHHHHHHhhhcccccCCCceEE
Confidence 88877777777666778899998888888887778888888899999999998888899999988887666667778899
Q ss_pred cCCChHHHHHHHHHcCCcccCceEEEEEecCCeEEEEECCEEEEecEEEEcCCCCcccCCccccCCCCCHHHHHHHHhcC
Q 005607 242 LPGGNGRLVQALVENVPILYEKTVHTIRYGSDGVQVLAGSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLG 321 (688)
Q Consensus 242 ~~gG~~~L~~~L~~~l~I~lnt~V~~I~~~~~~v~V~~~g~~~~ad~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~ 321 (688)
++||+++|+++|++.++|++|++|++|.+++++|+|+++++++.||+||+|+|+.+|+...|.|.|+||+.+.++|++++
T Consensus 376 v~GG~~~LieaLa~~L~I~Ln~~Vt~I~~~~dgV~V~~~~~~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~ 455 (881)
T PLN03000 376 LPGGNGRLVQALAENVPILYEKTVQTIRYGSNGVKVIAGNQVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLG 455 (881)
T ss_pred eCCCHHHHHHHHHhhCCcccCCcEEEEEECCCeEEEEECCcEEEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcCC
Confidence 99999999999999999999999999999999999988667899999999999999997779999999999999999999
Q ss_pred CcceeEEEEEcCCcccccCCCCceeeecCCCCCCceEEEeeccccCCCcEEEEEecchhhHhhcCCChHHHHHHHHHHHH
Q 005607 322 YGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILK 401 (688)
Q Consensus 322 ~~~~~kV~l~f~~~~w~~~~~~~g~l~~~~~~~~~~~~~~~~~~p~g~~vl~~~~~g~~a~~~~~ls~eel~~~vl~~L~ 401 (688)
|+.+.||++.|+++||+.+...||.+.+++..++.+++++++..+.+.++|++|++|+.+..++.++++++++.++++|+
T Consensus 456 ~G~l~KViL~Fd~~FW~~d~~~FG~l~~~~~~rg~~~~f~s~sp~~G~pVLvafv~Gd~A~~le~lSdeE~ve~vl~~Lr 535 (881)
T PLN03000 456 FGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNYRGEFFLFYSYAPVAGGPLLIALVAGEAAHKFETMPPTDAVTRVLHILR 535 (881)
T ss_pred CcceEEEEEEeCCccccCCCCceeEEecCCCCCceeEEEeCCCCCCCCcEEEEEecCchhHHhhcCCHHHHHHHHHHHHH
Confidence 99999999999999999888889999876655667777887776678889999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCCceEEEecCCCCCCCCcccCCCCCCCCcccHHHHhcccCCCcEEEeecccccccCccchHHHHHHHHH
Q 005607 402 GIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRE 481 (688)
Q Consensus 402 ~i~~~~~~~i~~p~~~~~~rW~~~p~~~Gay~~~~pG~~~~~~~~l~~pi~~~~L~fAGd~ts~~~~g~~eGAi~SG~~A 481 (688)
++|++.+..+++|+.+.+++|..|||+.|+|+++.||+....++.+++|+.+++||||||+|+..|+||||||+.||+||
T Consensus 536 kifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAGEaTs~~~~GTVhGAieSGlRA 615 (881)
T PLN03000 536 GIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLRE 615 (881)
T ss_pred HHhCccccccCCceEEEEccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEeehHHhCCCCeeHHHHHHHHHHH
Confidence 99986545678999999999999999999999999999888899999998668999999999988999999999999999
Q ss_pred HHHHHHHHhhhhhcccccccCCCCCCccccchhhhccCCCCCCCcCceEEeccCCCCCCCCccEEEEEEcCCCCCCCC--
Q 005607 482 TAKMAHCANARALRMKVKVGKIPSKNAYSCASALTDLFREPDLEFGSFSVIFSWKNPDPKSPSILRVTFNDPRKKNHG-- 559 (688)
Q Consensus 482 A~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 559 (688)
|++|+..++.+..++ +++..++++.+.++..|.|||++||+|||+|||||+|.++||+|++||||+|+++++++.+
T Consensus 616 A~eIl~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (881)
T PLN03000 616 AANMAQSAKARGIRK--RIDRNPSKNAHSCAILLADLFRDPDLEFGSFAIIFSRRNPDPKSPAILRVTLSEPRKRNEDPK 693 (881)
T ss_pred HHHHHHHhhhccCCc--ccccCccccccchhHHHHHHhhCcCccccceEEEecCCCCCCCCceeEEEEeccccccccccc
Confidence 999999999998886 8899999999999999999999999999999999999999999999999999999998653
Q ss_pred CCCCchhHHHHhhhhccccCceEEEEEeccHHHHHHHHhhhCCchhHHHHHHHhcCceeeecCCCCCChhHHHHHHHHHh
Q 005607 560 DQPHSNKRLFEQLQSHFNQQQQLHVYTLLTRQQVLDLREVRGGDEMRLNFLCEKLGVKLIGRKGLGSTADSVISSIKAER 639 (688)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (688)
.|.||||.+|||+|+||++|++|||||+||||||.||+++++|||+||+|||++|||||||||+|+++|++|||+||++|
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 773 (881)
T PLN03000 694 ADQHSNKILFQQLQSHFNQQQQIQVYTLLTRQQALDLREVRGGDEKRLNYLCETLGVKLVGRKGLGPGADSVIASIKAER 773 (881)
T ss_pred hhhhhhhhhhccccccccCcceEEEEEEeeHHHHHHHHHhhCCcHHHHHHHHHhcCeeEeecccCCccHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -ccccccccccchhhhHHHhhh----------Hhhhhhhhhhhcccc
Q 005607 640 -GIRKQTSTFSASKLVYKLLMK----------LCGILKRYFKAKNRN 675 (688)
Q Consensus 640 -~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 675 (688)
..|++.+.+.++|+||+.+.. .-|+|+|--..+|-|
T Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (881)
T PLN03000 774 TGNKLPSSSTSGTKSGMKPKAAGSKRKKVVSNVGGLMPRNSNMRNGN 820 (881)
T ss_pred hcCCCCCccccccccCCCccccchhHHHHHHhccCcccCCccccCCC
Confidence 566788899999999965542 235666654444443
No 2
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=100.00 E-value=5.2e-99 Score=863.49 Aligned_cols=611 Identities=61% Similarity=1.019 Sum_probs=536.9
Q ss_pred CCcccchhhHHHHHHHHHHHHHhhhhccccccchhcc-CCCCCCCCCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 2 FTESVPKHCHSLLDSAYNYLVSNGYINFGVAPEIKEK-IPVEPSSNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~in~g~~~~~~~~-~p~~~~~~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
++..|+..|.+|+..+|+||+++||||+|+.+..... .+........+|+|||||++||+||++|++.|++|+|||+++
T Consensus 192 a~~~~~~~~~~l~~~~~~~l~~~g~in~gv~~~~~~~~~~~~~~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~ 271 (808)
T PLN02328 192 ALESIRAEHKNLVDSAYNFLLEHGYINFGVAPVIKEAQLRSFEGVEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRA 271 (808)
T ss_pred HHhhcchhhHHHHHHHHHHHhccCceeeeccccccccccCCCCCCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 4567888999999999999999999999999876531 122222345899999999999999999999999999999999
Q ss_pred CCcceeeeeecCCCCCCCCceeeeccceeecCCCCcHHHHHHHHhCCceeeecCCccEEecCCcccChhhhHHHHHHHHH
Q 005607 81 RAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSLLHKVRDKCPLYRLDGNSVDPEIDMKVEADFNR 160 (688)
Q Consensus 81 rvGGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~LGl~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 160 (688)
++|||+.|....|. +..+.+|+|++|+++...+++..+++++|++.+.++..+.++..+|..++...+......+..
T Consensus 272 r~GGr~~t~~~~g~---~~~~~~d~Gas~i~g~~~npl~~l~~~lgl~~~~~~~~~~~~~~dG~~~~~~~~~~v~~~f~~ 348 (808)
T PLN02328 272 RPGGRVKTMKMKGD---GVVAAADLGGSVLTGINGNPLGVLARQLGLPLHKVRDICPLYLPDGKAVDAEIDSKIEASFNK 348 (808)
T ss_pred cCCCcccccccCCC---CcceeccCCceeecCCCccHHHHHHHHcCCceEecCCCceEEeCCCcCcchhhhhhHHHHHHH
Confidence 99999999988764 334579999999999888899999999999998888778889999998877666666677788
Q ss_pred HHHHHHHHHHHhhcc--ccCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhhhccccchhhhHHHhhccCCCCCCCCC
Q 005607 161 LLDKASRLRQLMGEV--AMDVSLGSALETFWRVYWDSGNAEAMNLFNWHLANLEYANASLLSKLSLAFWDQDDPYDMGGD 238 (688)
Q Consensus 161 ll~~~~~~~~~~~~~--~~~~sl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~ 238 (688)
+++...+++..+... ..+.+++++++.+....+...++..+.+++|++..+++.++..++.+++..|.+...+..++.
T Consensus 349 lL~~~~klr~~~~~~~~~~D~SLg~~le~~~~~~~~~~~~~e~~Ll~w~lanlE~~~gs~ls~LSl~~w~qd~~~e~~G~ 428 (808)
T PLN02328 349 LLDRVCKLRQAMIEEVKSVDVNLGTALEAFRHVYKVAEDPQERMLLNWHLANLEYANASLMSNLSMAYWDQDDPYEMGGD 428 (808)
T ss_pred HHHHHHHHHHhhhhcccccCcCHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHhccchhhHHHHHhhhhhccccccCCCe
Confidence 888777665544322 347899999987766655567788889999999999999988899999888887666777788
Q ss_pred eeecCCChHHHHHHHHHcCCcccCceEEEEEecCCeEEEEECCEEEEecEEEEcCCCCcccCCccccCCCCCHHHHHHHH
Q 005607 239 HCFLPGGNGRLVQALVENVPILYEKTVHTIRYGSDGVQVLAGSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIK 318 (688)
Q Consensus 239 ~~~~~gG~~~L~~~L~~~l~I~lnt~V~~I~~~~~~v~V~~~g~~~~ad~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~ 318 (688)
+++++||+++|+++|++.++|++|++|++|.+.+++|.|+.+|+++.||+||+|+|+++|++..|.|.|+||+.+.++|+
T Consensus 429 ~~~v~GG~~~Li~aLa~~L~I~ln~~V~~I~~~~dgV~V~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~ 508 (808)
T PLN02328 429 HCFIPGGNDTFVRELAKDLPIFYERTVESIRYGVDGVIVYAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQ 508 (808)
T ss_pred EEEECCcHHHHHHHHHhhCCcccCCeeEEEEEcCCeEEEEeCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999998866888999999999999999997678899999999999999
Q ss_pred hcCCcceeEEEEEcCCcccccCCCCceeeecCCCCCCceEEEeeccccCCCcEEEEEecchhhHhhcCCChHHHHHHHHH
Q 005607 319 RLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQ 398 (688)
Q Consensus 319 ~l~~~~~~kV~l~f~~~~w~~~~~~~g~l~~~~~~~~~~~~~~~~~~p~g~~vl~~~~~g~~a~~~~~ls~eel~~~vl~ 398 (688)
+++|+++.||++.|+++||......+|.+..+...++.++++++++.+.+.+++++|++|+.+..+..++++++++.+++
T Consensus 509 ~l~yG~~~KV~L~F~~~FW~~~~d~fG~l~~d~s~rG~~~lf~s~s~~~G~~vLvafv~G~~A~~~e~lsdeE~v~~vL~ 588 (808)
T PLN02328 509 RLGYGLLNKVALLFPYNFWGGEIDTFGHLTEDPSMRGEFFLFYSYSSVSGGPLLIALVAGDAAVKFETLSPVESVKRVLQ 588 (808)
T ss_pred cCCCcceEEEEEEeCCccccCCCCceEEEeecCCCCceEEEEecCCCCCCCcEEEEEecChhhHHHhcCCHHHHHHHHHH
Confidence 99999999999999999999877788988876666677778888777777899999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCCCCceEEEecCCCCCCCCcccCCCCCCCCcccHHHHhcccCCCcEEEeecccccccCccchHHHHHH
Q 005607 399 ILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSG 478 (688)
Q Consensus 399 ~L~~i~~~~~~~i~~p~~~~~~rW~~~p~~~Gay~~~~pG~~~~~~~~l~~pi~~~~L~fAGd~ts~~~~g~~eGAi~SG 478 (688)
+|+++|++.+..+++|....+++|..+||++|+|+++.||+....++.+.+|+.+++||||||+|+..|+||||||+.||
T Consensus 589 ~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FAGEaTs~~~~GtVhGAi~SG 668 (808)
T PLN02328 589 ILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNKQYPATMHGAFLSG 668 (808)
T ss_pred HHHHHhCcccccccCcceEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEEEhhHhCCCCeEhHHHHHHH
Confidence 99999986444567899999999999999999999999999877788999997668999999999988899999999999
Q ss_pred HHHHHHHHHHHhhhhhcccccccCCCCCCccccchhhhccCCCCCCCcCceEEeccCCCCCCCCccEEEEEEcCCCCCCC
Q 005607 479 LRETAKMAHCANARALRMKVKVGKIPSKNAYSCASALTDLFREPDLEFGSFSVIFSWKNPDPKSPSILRVTFNDPRKKNH 558 (688)
Q Consensus 479 ~~AA~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (688)
++||++|++.++.+..+...+.+. ...++..|.|||++||++||+|||||+|.++||+|++||||+|+.+++++
T Consensus 669 lRAA~eIl~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 742 (808)
T PLN02328 669 MREAANILRVARRRSLCIDDKVNN-----DEEEDDCLDQLFDTPDLTFGSFSILFDPRSNDPESLSLLRVKFQGEKPDS- 742 (808)
T ss_pred HHHHHHHHHHHhhcccCCcccccc-----cchhhhHHHHHhcCcCccccceEEEecCCCCCCCCceeEEEEeccCCCCc-
Confidence 999999999998887653223333 23367889999999999999999999999999999999999999988853
Q ss_pred CCCCCchhHHHHhhhhccccCceEEEEEeccHHHHHHHHhhhCCchhHHHHHHHhcCceeeecCCCCCChhHHHHHHHHH
Q 005607 559 GDQPHSNKRLFEQLQSHFNQQQQLHVYTLLTRQQVLDLREVRGGDEMRLNFLCEKLGVKLIGRKGLGSTADSVISSIKAE 638 (688)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (688)
++|||||+||||||.+|+++ +|||+||+|||++|||||||||+|+++|++|||+||++
T Consensus 743 ---------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (808)
T PLN02328 743 ---------------------CFLCLYGLVSRKQAIELGEL-DDDGKRNEYLYEKFQVVLVGRKGLSQEGESLISSIKEA 800 (808)
T ss_pred ---------------------ccEEEEEeeeHHHHHHHHHc-CCcHHHHHHHHHhcCeEEeecccccccHHHHHHHHHHh
Confidence 56999999999999999998 79999999999999999999999999999999999999
Q ss_pred hcccc
Q 005607 639 RGIRK 643 (688)
Q Consensus 639 ~~~~~ 643 (688)
|+++.
T Consensus 801 ~~~~~ 805 (808)
T PLN02328 801 RLNLQ 805 (808)
T ss_pred hhccc
Confidence 99874
No 3
>PLN02529 lysine-specific histone demethylase 1
Probab=100.00 E-value=5.9e-99 Score=860.63 Aligned_cols=620 Identities=57% Similarity=0.964 Sum_probs=543.0
Q ss_pred CCcccchhhHHHHHHHHHHHHHhhhhccccccchhccCCCCCCCCCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 005607 2 FTESVPKHCHSLLDSAYNYLVSNGYINFGVAPEIKEKIPVEPSSNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (688)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~in~g~~~~~~~~~p~~~~~~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~r 81 (688)
+++.|..++.++|..+|+||+++|+||+|+.+......+. ....++|+|||||++||+||+.|+++|++|+|||++++
T Consensus 117 a~~~~~~~i~~ci~~c~~~l~~~~~inc~vnp~~~~~~~~--~~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~ 194 (738)
T PLN02529 117 IKETVSSEYEHLISAAYDFLLYNGYINFGVSPSFASPIPE--EGTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNR 194 (738)
T ss_pred HhhhchhhHHHHHHHHHHHHHhCCCcceeecccccCCCCc--ccCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 4567889999999999999999999999999875442232 23458999999999999999999999999999999999
Q ss_pred CcceeeeeecCCCCCCCCceeeeccceeecCCCCcHHHHHHHHhCCceeeecCCccEEecCCcccChhhhHHHHHHHHHH
Q 005607 82 AGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSLLHKVRDKCPLYRLDGNSVDPEIDMKVEADFNRL 161 (688)
Q Consensus 82 vGGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~LGl~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~l 161 (688)
+|||++|....+. +....+|+|++|+++.+.|++..+++++|++.+..+..+.+|..+|..++...+..+...+..+
T Consensus 195 ~GG~~~t~~~~~~---g~~~~~DlGaswi~g~~~npl~~la~~lgl~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~~ 271 (738)
T PLN02529 195 PGGRVYTQKMGRK---GQFAAVDLGGSVITGIHANPLGVLARQLSIPLHKVRDNCPLYKPDGALVDKEIDSNIEFIFNKL 271 (738)
T ss_pred CcCceeeecccCC---CCceEEecCCeeccccccchHHHHHHHhCCCccccCCCceEEeCCCcCcchhhhhhHHHHHHHH
Confidence 9999999987532 1225899999999999999999999999999888877788899999988776666555567777
Q ss_pred HHHHHHHHHHhhccccCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhhhccccchhhhHHHhhccCCCCCCCCCeee
Q 005607 162 LDKASRLRQLMGEVAMDVSLGSALETFWRVYWDSGNAEAMNLFNWHLANLEYANASLLSKLSLAFWDQDDPYDMGGDHCF 241 (688)
Q Consensus 162 l~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~~~~ 241 (688)
++....+...+....++.|+.++++.+.+......++..++++.|+...+++..+..++.+++.+|.+...+..++.+++
T Consensus 272 l~~~~~l~~~~~~~~~d~Sl~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~a~~~~~s~LSl~~~~~~~~~e~~G~~~~ 351 (738)
T PLN02529 272 LDKVTELRQIMGGFANDISLGSVLERLRQLYGVARSTEERQLLDWHLANLEYANAGCLSDLSAAYWDQDDPYEMGGDHCF 351 (738)
T ss_pred HHHHHHHHHhcccCccCCCHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhceecCCChHHhhhhHhhhccccccCCceEE
Confidence 77766665555545678899999987766655567788889999999889998888899999999988766777888999
Q ss_pred cCCChHHHHHHHHHcCCcccCceEEEEEecCCeEEEEECCEEEEecEEEEcCCCCcccCCccccCCCCCHHHHHHHHhcC
Q 005607 242 LPGGNGRLVQALVENVPILYEKTVHTIRYGSDGVQVLAGSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLG 321 (688)
Q Consensus 242 ~~gG~~~L~~~L~~~l~I~lnt~V~~I~~~~~~v~V~~~g~~~~ad~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~ 321 (688)
+.||+++|+++|+++++|++|++|++|.+++++|+|+++++++.||+||+|+|++++++..|.|.|+||+.+.+++++++
T Consensus 352 i~GG~~~Li~aLA~~L~IrLnt~V~~I~~~~dGVtV~t~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~ 431 (738)
T PLN02529 352 LAGGNWRLINALCEGVPIFYGKTVDTIKYGNDGVEVIAGSQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRLG 431 (738)
T ss_pred ECCcHHHHHHHHHhcCCEEcCCceeEEEEcCCeEEEEECCEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcCC
Confidence 99999999999999999999999999999999999988778999999999999999997678899999999999999999
Q ss_pred CcceeEEEEEcCCcccccCCCCceeeecCCCCCCceEEEeeccccCCCcEEEEEecchhhHhhcCCChHHHHHHHHHHHH
Q 005607 322 YGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILK 401 (688)
Q Consensus 322 ~~~~~kV~l~f~~~~w~~~~~~~g~l~~~~~~~~~~~~~~~~~~p~g~~vl~~~~~g~~a~~~~~ls~eel~~~vl~~L~ 401 (688)
|+++.||++.|+++||+.+...+|++.......+.++++++++.+.+.+++++|+.|+.+..+..++++++++.++++|+
T Consensus 432 yG~v~KV~L~F~~~FW~~~~~~fG~l~~~~~~~g~~~~~~~~~~~~ggpvLvafv~G~~A~~le~lsdeeii~~vl~~L~ 511 (738)
T PLN02529 432 FGLLNKVAMVFPSVFWGEELDTFGCLNESSNKRGEFFLFYGYHTVSGGPALVALVAGEAAQRFENTDPSTLLHRVLSVLR 511 (738)
T ss_pred CceeEEEEEEeCCccccCCCCceEEEeccCCCCceEEEEecCCCCCCCCEEEEEECchhhHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999998776788888765555666777777776667789999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCCceEEEecCCCCCCCCcccCCCCCCCCcccHHHHhcccCCCcEEEeecccccccCccchHHHHHHHHH
Q 005607 402 GIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRE 481 (688)
Q Consensus 402 ~i~~~~~~~i~~p~~~~~~rW~~~p~~~Gay~~~~pG~~~~~~~~l~~pi~~~~L~fAGd~ts~~~~g~~eGAi~SG~~A 481 (688)
++|++....+++|..+.+++|..+||+.|+|+++.||.....++.+.+|+. ++||||||+|+..|+||||||+.||++|
T Consensus 512 ~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~-grL~FAGEaTs~~~pgtVeGAi~SG~RA 590 (738)
T PLN02529 512 GIYNPKGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVS-GRLFFAGEATTRQYPATMHGAFLSGLRE 590 (738)
T ss_pred HHhCccccccCCceEEEEccCCcCCCCCCCcccCCCCCchhHHHHHhCCCC-CCEEEEEHHHhCCCCeEeHHHHHHHHHH
Confidence 999865456789999999999999999999999999887666778888863 8999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcccccccCCCCCCccccchhhhccCCCCCCCcCceEEeccCCCCCCCCccEEEEEEcCCCCCCCCCC
Q 005607 482 TAKMAHCANARALRMKVKVGKIPSKNAYSCASALTDLFREPDLEFGSFSVIFSWKNPDPKSPSILRVTFNDPRKKNHGDQ 561 (688)
Q Consensus 482 A~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (688)
|++|++.++.+.... .+...++...+++.|.|||++||++||+|||||+|.++||+|++||||+|+++++++
T Consensus 591 A~eIl~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 662 (738)
T PLN02529 591 ASRILHVARSQQSNS----RKSMQRNSGVSNDVLIDLFKRPDLAFGKFSFIFNPLTEDPKSMGIMRVTFDNSGDDL---- 662 (738)
T ss_pred HHHHHHHHhhhhccc----hhhhhccCCcchHHHHHhhcCccccccceEEEecCCCCCCcCceeEEEEecCCCCCC----
Confidence 999999887655433 233444566688999999999999999999999999999999999999999999853
Q ss_pred CCchhHHHHhhhhccccCceEEEEEeccHHHHHHHHhhhCCchhHHHHHHHhcCceeeecCCCCCChhHHHHHHHHHhcc
Q 005607 562 PHSNKRLFEQLQSHFNQQQQLHVYTLLTRQQVLDLREVRGGDEMRLNFLCEKLGVKLIGRKGLGSTADSVISSIKAERGI 641 (688)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (688)
.++|||||+||||||.+|+...+|||+||+|||++||||||||++|+++|++|||+||++|++
T Consensus 663 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (738)
T PLN02529 663 -----------------NLPLQLYTVLSREQAHKLQLDEGSNESKLSCLMKNLGLKLMGPSSLVNTGGSLISTIANARRG 725 (738)
T ss_pred -----------------CccEEEEEeeeHHHHHHHHHHhCCcHHHHHHHHHhcCeeEeccccccchHHHHHHHHHHHhhc
Confidence 268999999999999999777799999999999999999999999999999999999999999
Q ss_pred ccccccccchh
Q 005607 642 RKQTSTFSASK 652 (688)
Q Consensus 642 ~~~~~~~~~~~ 652 (688)
|+++++..+.+
T Consensus 726 ~~~~~~~~~~~ 736 (738)
T PLN02529 726 RGRNRVVAGQC 736 (738)
T ss_pred cccceeccccC
Confidence 99988877654
No 4
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.3e-54 Score=475.42 Aligned_cols=473 Identities=47% Similarity=0.758 Sum_probs=393.1
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceeeeeecCCCCCCCCceeeeccceeecCCCCcHHHHHHHH
Q 005607 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQ 124 (688)
Q Consensus 45 ~~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~ 124 (688)
.++++|||||||+|||+||++|.+.|++|+||||++|+|||++|.+..++ ..+|+|++|+++.+.|++..++++
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~------~~vd~Gas~~~g~~~npl~~l~~q 86 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGG------DHVDLGASVLTGVYNNPLALLSKQ 86 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCC------CeeecCCceecCcCccHHHHHHHH
Confidence 34589999999999999999999999999999999999999999999876 269999999999999999999999
Q ss_pred hCCceeeecCCccEEecCCcccChhhhHHHHHHHHHHHHHHHHHHHHhhcccc---CCCHHHHHHHHHHHhccCCCH---
Q 005607 125 LGSLLHKVRDKCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLRQLMGEVAM---DVSLGSALETFWRVYWDSGNA--- 198 (688)
Q Consensus 125 LGl~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~---~~sl~~~l~~~~~~~~~~~~~--- 198 (688)
+|++...+...++++...+.......+......+..++.....+...+..... ..++...++.+..........
T Consensus 87 lgl~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (501)
T KOG0029|consen 87 LGLELYKVRDTCPLFNENGGESDKVFDDFVEQEFNRLLDDASNLEQRLDNEIIGISDDSFGEALEAFLSASRLMKTLLEL 166 (501)
T ss_pred hCcccceecccccccccCCcccccccccchhhhhHHHHHHHhhhhhhhhhcccccccccHHHHHHhHHHHHHHHHhhHHH
Confidence 99999999999999988886665555655666677777777666665554433 345555444333222111111
Q ss_pred ----HHHHHHHHHHHhhhhccccchhhhHHHhhccCCCCCCCCCeeecCCChHHHHHHHHHcCCcccCceEEEEEecCCe
Q 005607 199 ----EAMNLFNWHLANLEYANASLLSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQALVENVPILYEKTVHTIRYGSDG 274 (688)
Q Consensus 199 ----~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~~~~~~gG~~~L~~~L~~~l~I~lnt~V~~I~~~~~~ 274 (688)
+....+.|++..++.........++...|.+...+...+.+....+|+..++..|+.+++|++++.|.+|.+.+++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~G~~~v~~~la~~l~I~~~~~v~~i~~~~~~ 246 (501)
T KOG0029|consen 167 LLEGEADKVLQWHLVNLELTFIAHLENASARLWDQDELFGGGGIHLLMKGGYEPVVNSLAEGLDIHLNKRVRKIKYGDDG 246 (501)
T ss_pred hhhhhhhHHHHHHHHHHHHHhhccHhHhhHHhhhhhhhcccccchhHhhCCccHHHhhcCCCcceeeceeeEEEEEecCC
Confidence 3445778999999999988889999999998887776667788999999999999999999999999999998887
Q ss_pred -EEEEE-CCEEEEecEEEEcCCCCcccCCccccCCCCCHHHHHHHHhcCCcceeEEEEEcCCcccccCCCCceeeecCCC
Q 005607 275 -VQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSS 352 (688)
Q Consensus 275 -v~V~~-~g~~~~ad~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f~~~~w~~~~~~~g~l~~~~~ 352 (688)
+.+++ ++..+.+|+||+|+|+++|+...|.|.|+||..+.++|++++.+.+.||.+.|++.||+.+.+.||.+.+...
T Consensus 247 ~~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~~d~fg~~~~~~~ 326 (501)
T KOG0029|consen 247 AVKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPRWKQEAIDRLGFGLVNKVILEFPRVFWDQDIDFFGIVPETSV 326 (501)
T ss_pred ceEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCcHHHHHHHHhcCCCceeEEEEEeccccCCCCcCeEEEcccccc
Confidence 34554 5555999999999999999988899999999999999999999999999999999999988889999988877
Q ss_pred CCCceEEEeeccccCCCcEEEEEecchhhHhhcCCChHHHHHHHHHHHHhhcCCCCCCCCCCceEEEecCCCCCCCCccc
Q 005607 353 SRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSY 432 (688)
Q Consensus 353 ~~~~~~~~~~~~~p~g~~vl~~~~~g~~a~~~~~ls~eel~~~vl~~L~~i~~~~~~~i~~p~~~~~~rW~~~p~~~Gay 432 (688)
.++.+ .|++.....+.+++++++.+..++.+..++++++++.++..|+++|+ ...+++|++..+++|..++++.|+|
T Consensus 327 ~~~~~-~f~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~l~k~f~--~~~~~~p~~~~vt~w~~d~~~~gsy 403 (501)
T KOG0029|consen 327 LRGLF-TFYDCKPVAGHPVLMSVVVGEAAERVETLSDSEIVKKAMKLLRKVFG--SEEVPDPLDALVTRWGTDPLSGGSY 403 (501)
T ss_pred ccchh-hhhhcCccCCCCeEEEEehhhhhHHHhcCCHHHHHHHHHHHHHHHhc--cCcCCCccceeeeeecccccCCccc
Confidence 66655 67777777777899999999999999999999999999999999998 4568999999999999999999999
Q ss_pred CCCCCCCCcccHHHHhcccCCCcEEEeecccccccCccchHHHHHHHHHHHHHHHHHhhhhhcccc---cccCCCCCCcc
Q 005607 433 SNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANARALRMKV---KVGKIPSKNAY 509 (688)
Q Consensus 433 ~~~~pG~~~~~~~~l~~pi~~~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l~~~~~~~~~---~~~~~~~~~~~ 509 (688)
++..++.....++.+.+|+. +++||||++|+..|+|+|+||+.||.+||..|+..+......... ..+.+......
T Consensus 404 s~~~~~~~~~~y~~l~~pi~-~~~ffage~t~~~~~~tm~GA~~sG~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (501)
T KOG0029|consen 404 SYVAVGSDGDDYDRLAEPIK-NRVFFAGEATSRKYPGTMHGAYLSGLRAASDILDSLIEILRAGALRRLEPEVTDELSIE 482 (501)
T ss_pred cccCCCCChhHHHHHhcccc-CcEEecchhhcccCCCchHHHHHhhHHHHHHHHHHHHhhhhcccccccccccchhcccc
Confidence 99999988888899999993 459999999999999999999999999999999998742221111 12233333333
Q ss_pred ccchhhhccCCCCCCCcCce
Q 005607 510 SCASALTDLFREPDLEFGSF 529 (688)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~ 529 (688)
.. .....++.|.+.+|.+
T Consensus 483 ~~--~~~~~~~~~~~~~~~~ 500 (501)
T KOG0029|consen 483 LD--VLEQEARNPELISGLP 500 (501)
T ss_pred cc--hhhhhccccccccCCC
Confidence 32 6677788888877763
No 5
>PLN02976 amine oxidase
Probab=100.00 E-value=5.9e-52 Score=482.89 Aligned_cols=439 Identities=44% Similarity=0.779 Sum_probs=359.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceeeeeecCCCCCCCCceeeeccceeecCCCC--------cH
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLG--------NP 117 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~--------~~ 117 (688)
..++|+|||||++||+||+.|.+.|++|+|||+++++||++++..... ++.+|+|++|+++... ++
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~~------g~pvDlGas~i~G~~~nv~~~r~~np 765 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSL------SVPVDLGASIITGVEADVATERRPDP 765 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeeccccC------CceeccCcEEEecccccccccccccH
Confidence 347899999999999999999999999999999999999999986532 2489999999987533 66
Q ss_pred HHHHHHHhCCceeeecCCccEEe-cCCcccChhhhHHHHHHHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHh----
Q 005607 118 LGILAKQLGSLLHKVRDKCPLYR-LDGNSVDPEIDMKVEADFNRLLDKASRLRQLMGEVAMDVSLGSALETFWRVY---- 192 (688)
Q Consensus 118 l~~L~~~LGl~~~~~~~~~~~~~-~~G~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~---- 192 (688)
+..+++++|+........++.|. .+|..++...+..+...+..+++..............+.+++++++....+.
T Consensus 766 ~~~la~qlGl~l~~~~~~~~~yd~~~G~~V~~e~~~~v~~~fn~lld~~~~~~~~~g~~a~d~SLgd~Le~~~~~~~~~~ 845 (1713)
T PLN02976 766 SSLICAQLGLELTVLNSDCPLYDVVTGEKVPADLDEALEAEYNSLLDDMVLLVAQKGEHAMKMSLEDGLEYALKRRRMPR 845 (1713)
T ss_pred HHHHHHhcCCccccccCCCceeEccCCcCCCHHHHHHHHHHHHHHHHHHHHHHhhcccCccCCCHHHHHHHHHhhhhccc
Confidence 77789999999877665555544 6788888888887878888877655543222222244677777776311100
Q ss_pred -----------------------------------ccCCCHHHHHHHHHHHHhhhhccccchhhhHHHhhccCCCCC-CC
Q 005607 193 -----------------------------------WDSGNAEAMNLFNWHLANLEYANASLLSKLSLAFWDQDDPYD-MG 236 (688)
Q Consensus 193 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~ 236 (688)
...+++..+.++.|++..+++..+..+..+++.+|.+...|. .+
T Consensus 846 ~~~~~~~~~~~~~~~~l~~~~~~~v~G~~~er~s~~~~Ls~~er~lL~w~~~~lE~~~aa~L~eVSl~~~~qd~~y~~fg 925 (1713)
T PLN02976 846 PGVDIDETELGNAADDLYDSASTGVDGGHCEKESKEDVLSPLERRVMNWHFAHLEYGCAALLKEVSLPYWNQDDVYGGFG 925 (1713)
T ss_pred cccccchhhcccchhhhhhhhhhcccccchhhhhHHHhhCHHHHHHHHHHHHhhcccccCCHHHhhhhhhhcccccccCC
Confidence 011234445667777777767667778888888887554332 35
Q ss_pred CCeeecCCChHHHHHHHHHcCCcccCceEEEEEec----------CCeEEEEE-CCEEEEecEEEEcCCCCcccCCcccc
Q 005607 237 GDHCFLPGGNGRLVQALVENVPILYEKTVHTIRYG----------SDGVQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKF 305 (688)
Q Consensus 237 g~~~~~~gG~~~L~~~L~~~l~I~lnt~V~~I~~~----------~~~v~V~~-~g~~~~ad~VI~AvP~~~l~~~~i~~ 305 (688)
|..+.++||+++|+++|+++++|++|++|++|.+. +++|.|++ +|+++.||+||+|+|+++|+...|.|
T Consensus 926 G~~~rIkGGYqqLIeALAe~L~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVPLGVLKag~I~F 1005 (1713)
T PLN02976 926 GAHCMIKGGYSNVVESLAEGLDIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVPLGCLKAETIKF 1005 (1713)
T ss_pred CceEEeCCCHHHHHHHHHhhCCeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCCHHHhhhccccc
Confidence 67888999999999999999999999999999984 35788888 88899999999999999998656899
Q ss_pred CCCCCHHHHHHHHhcCCcceeEEEEEcCCcccccCCCCceeeecCCCCCCceEEEeeccccCCCcEEEEEecchhhHhhc
Q 005607 306 IPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFE 385 (688)
Q Consensus 306 ~p~Lp~~~~~ai~~l~~~~~~kV~l~f~~~~w~~~~~~~g~l~~~~~~~~~~~~~~~~~~p~g~~vl~~~~~g~~a~~~~ 385 (688)
.|+||..+.++|++++++.+.||++.|+++||+.+...||........++.++.+|+...+.+.++|++|+.|..+..+.
T Consensus 1006 sPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~edtdlrG~~~~~wnlr~psG~pVLVafv~G~aAreiE 1085 (1713)
T PLN02976 1006 SPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEETDLRGQCFMFWNVKKTVGAPVLIALVVGKAAIDGQ 1085 (1713)
T ss_pred CCcccHHHHHHHHhhccccceEEEEEeCCccccCCCCccccccccCCCCceEEEeccCCCCCCCCEEEEEeccHhHHHHh
Confidence 99999999999999999999999999999999987777887665444455666677666666778999999999999999
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCCCCCCceEEEecCCCCCCCCcccCCCCCCCCcccHHHHhcccCCCcEEEeeccccc
Q 005607 386 SMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIR 465 (688)
Q Consensus 386 ~ls~eel~~~vl~~L~~i~~~~~~~i~~p~~~~~~rW~~~p~~~Gay~~~~pG~~~~~~~~l~~pi~~~~L~fAGd~ts~ 465 (688)
.++++++++.+++.|.++||.. .++.|..+.+++|..+||+.|+|+++.||.....+..+.+|++ ++|||||++|+.
T Consensus 1086 sLSDEE~Ve~ALe~LrKlFG~~--~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~d~d~LAePVg-gRLFFAGEATS~ 1162 (1713)
T PLN02976 1086 SMSSSDHVNHALMVLRKLFGEA--LVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDILGRPVE-NCLFFAGEATCK 1162 (1713)
T ss_pred hCCHHHHHHHHHHHHHHHcCcc--cccCcceeEEecCCCCCCcCccccCCCCCCCchHHHHHhCCCC-CcEEEEehhhhC
Confidence 9999999999999999999842 4678999999999999999999999999998878889999984 569999999999
Q ss_pred ccCccchHHHHHHHHHHHHHHHHHhhhh
Q 005607 466 RYPATMHGAFLSGLRETAKMAHCANARA 493 (688)
Q Consensus 466 ~~~g~~eGAi~SG~~AA~~Il~~l~~~~ 493 (688)
.|+||||||+.||.|||++|+..+....
T Consensus 1163 ~~pGTVHGAIeSG~RAA~eIL~~L~~G~ 1190 (1713)
T PLN02976 1163 EHPDTVGGAMMSGLREAVRIIDILNTGN 1190 (1713)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHccC
Confidence 9999999999999999999999986543
No 6
>PLN02268 probable polyamine oxidase
Probab=100.00 E-value=5.3e-50 Score=445.37 Aligned_cols=420 Identities=35% Similarity=0.538 Sum_probs=313.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceeeeeecCCCCCCCCceeeeccceeecCC-CCcHHHHHHHHhC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGT-LGNPLGILAKQLG 126 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~-~~~~l~~L~~~LG 126 (688)
++|||||||+|||+||+.|.++|++|+||||++|+|||++|....|. .+|+|++|+++. ..+++..|++++|
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~g~-------~~d~G~~~i~~~~~~~~~~~l~~~lg 73 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFGF-------PVDMGASWLHGVCNENPLAPLIGRLG 73 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcCCc-------ccCCCCeeEeccCCCchHHHHHHHhC
Confidence 47999999999999999999999999999999999999999876554 899999999874 3567889999999
Q ss_pred CceeeecCCccEEe-----------cCCcccChhhhHHHHHHHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHhc-c
Q 005607 127 SLLHKVRDKCPLYR-----------LDGNSVDPEIDMKVEADFNRLLDKASRLRQLMGEVAMDVSLGSALETFWRVYW-D 194 (688)
Q Consensus 127 l~~~~~~~~~~~~~-----------~~G~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~-~ 194 (688)
++.........+.+ ..+..++......+...+..++....+.. ....++.|+.++++.+..... .
T Consensus 74 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~~~~~~~~~~~~~~ 150 (435)
T PLN02268 74 LPLYRTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGETFERILEETEKVR---DEHEEDMSLLQAISIVLERHPEL 150 (435)
T ss_pred CceEeccCCccccccccccccceecCCCCCCCHHHHHHHHHHHHHHHHHHHHHH---hccCCCcCHHHHHHHHhhhCccc
Confidence 98665432222211 11122222222222223333333222211 112467889888765432211 0
Q ss_pred CCCHHHHHHHHHHHHhhhhccccchhhhHHHhhccCCCCCCCCCeeecCCChHHHHHHHHHcCCcccCceEEEEEecCCe
Q 005607 195 SGNAEAMNLFNWHLANLEYANASLLSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQALVENVPILYEKTVHTIRYGSDG 274 (688)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~~~~~~gG~~~L~~~L~~~l~I~lnt~V~~I~~~~~~ 274 (688)
........++.+++..+....+.....++...+..... ..|....+.+|++.|+++|+++++|++|++|++|...+++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~--~~g~~~~~~~G~~~l~~~l~~~~~i~~~~~V~~i~~~~~~ 228 (435)
T PLN02268 151 RLEGLAHEVLQWYLCRMEGWFAADADTISLKSWDQEEL--LEGGHGLMVRGYDPVINTLAKGLDIRLNHRVTKIVRRYNG 228 (435)
T ss_pred ccchHHHHHHHHHHHHHHHHhCCChHhCchhhcCCccc--cCCCceeecCCHHHHHHHHhccCceeCCCeeEEEEEcCCc
Confidence 11112333444433322222333344555544433221 1233567889999999999999999999999999999999
Q ss_pred EEEEE-CCEEEEecEEEEcCCCCcccCCccccCCCCCHHHHHHHHhcCCcceeEEEEEcCCcccccCCCCceeeecCCCC
Q 005607 275 VQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSS 353 (688)
Q Consensus 275 v~V~~-~g~~~~ad~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f~~~~w~~~~~~~g~l~~~~~~ 353 (688)
|+|++ +|+++.||+||+|+|+.++++..+.|.|+||+.+.+++++++|++..||.+.|+++||+.. ..+|.+.+...
T Consensus 229 v~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~~-~~~g~~~~~~~- 306 (435)
T PLN02268 229 VKVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVFWPNV-EFLGVVAPTSY- 306 (435)
T ss_pred EEEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCCCCCC-ceeeccCCCCC-
Confidence 99988 7888999999999999999865678899999999999999999999999999999999753 44555543221
Q ss_pred CCceEEEeeccccCCCcEEEEEecchhhHhhcCCChHHHHHHHHHHHHhhcCCCCCCCCCCceEEEecCCCCCCCCcccC
Q 005607 354 RGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYS 433 (688)
Q Consensus 354 ~~~~~~~~~~~~p~g~~vl~~~~~g~~a~~~~~ls~eel~~~vl~~L~~i~~~~~~~i~~p~~~~~~rW~~~p~~~Gay~ 433 (688)
...++.+.....+..++++|+.+..+..+..++++++++.++++|.++|+. .+.|+.+.+++|..+||+.|+|+
T Consensus 307 --~~~~~~~~~~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~v~~~L~~~~~~----~~~p~~~~~~~W~~dp~~~G~~~ 380 (435)
T PLN02268 307 --GCSYFLNLHKATGHPVLVYMPAGRLARDIEKLSDEAAANFAMSQLKKMLPD----ATEPVQYLVSRWGSDPNSLGCYS 380 (435)
T ss_pred --CceEEEecccCCCCCEEEEEeccHHHHHHHhCCHHHHHHHHHHHHHHHcCC----CCCccEEEecccCCCCCCCccCC
Confidence 112333333345677899999999999999999999999999999999963 35788999999999999999999
Q ss_pred CCCCCCCcccHHHHhcccCCCcEEEeecccccccCccchHHHHHHHHHHHHHHHHH
Q 005607 434 NVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCA 489 (688)
Q Consensus 434 ~~~pG~~~~~~~~l~~pi~~~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l 489 (688)
++.||+....++.+++|+ ++||||||+|+..|+||||||+.||++||++|++.+
T Consensus 381 ~~~~g~~~~~~~~l~~p~--~~l~FAGe~ts~~~~g~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 381 YDLVGKPHDLYERLRAPV--DNLFFAGEATSSDFPGSVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred CCCCCCCHHHHHHHhCCC--CCeEEeeccCCCcccccHHHHHHHHHHHHHHHHHhh
Confidence 999998767788899998 889999999998889999999999999999999754
No 7
>PLN02568 polyamine oxidase
Probab=100.00 E-value=4.6e-48 Score=435.02 Aligned_cols=435 Identities=31% Similarity=0.420 Sum_probs=318.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCC-----CcEEEEecCCCCcceeeeeecCCCCCCCCceeeeccceeecCCCCcHHHH
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLG-----FRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGI 120 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~G-----~~V~VLEa~~rvGGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~ 120 (688)
+++||||||||+|||+||++|++.| ++|+|||+++++|||++|.+..|+ .+|.|++|+++...+++..
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~g~-------~~d~G~~~~~g~~~~~~~~ 76 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFGGE-------RIEMGATWIHGIGGSPVYK 76 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeCCe-------EEecCCceeCCCCCCHHHH
Confidence 3479999999999999999999988 899999999999999999998776 9999999999887889999
Q ss_pred HHHHhCCceeeec--------CCccEEecCCcccChhhhHHHHHHHHHHHHHHHHHH---------------HHhhc---
Q 005607 121 LAKQLGSLLHKVR--------DKCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLR---------------QLMGE--- 174 (688)
Q Consensus 121 L~~~LGl~~~~~~--------~~~~~~~~~G~~~~~~~~~~~~~~~~~ll~~~~~~~---------------~~~~~--- 174 (688)
|++++|+.....+ ....++..+|..++......+...+..+++...... ....+
T Consensus 77 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 156 (539)
T PLN02568 77 IAQEAGSLESDEPWECMDGFPDRPKTVAEGGFEVDPSIVESISTLFRGLMDDAQGKLIEPSEVDEVDFVKLAAKAARVCE 156 (539)
T ss_pred HHHHhCCccccCcceecccccccceEEccCCcCCCHHHHHHHHHHHHHHHHHhhcccccccccccccccccchhccchhc
Confidence 9999998543221 123355667877776666566666666665443111 00000
Q ss_pred cccCCCHHHHHHH-HHHHhccCCCH------------HHHHHHHHHHHhhhhccc--cchhhhHHHhhccCCCCCCCCCe
Q 005607 175 VAMDVSLGSALET-FWRVYWDSGNA------------EAMNLFNWHLANLEYANA--SLLSKLSLAFWDQDDPYDMGGDH 239 (688)
Q Consensus 175 ~~~~~sl~~~l~~-~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~~~g~~ 239 (688)
...+.+++++++. +.........+ .....+...+..++.... ..++.++...... .....|..
T Consensus 157 ~~~~~Sl~~fl~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~--~~~~~g~~ 234 (539)
T PLN02568 157 SGGGGSVGSFLRRGLDAYWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESE--YRMFPGEE 234 (539)
T ss_pred cCCCCcHHHHHHHHHHHHHhhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccHhhccccccCc--ceecCCCe
Confidence 1133478887764 22211111111 111111112223332222 2222332221111 11234567
Q ss_pred eecCCChHHHHHHHHHcCC---cccCceEEEEEecCCeEEEEE-CCEEEEecEEEEcCCCCcccCC----ccccCCCCCH
Q 005607 240 CFLPGGNGRLVQALVENVP---ILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKSG----SIKFIPELPQ 311 (688)
Q Consensus 240 ~~~~gG~~~L~~~L~~~l~---I~lnt~V~~I~~~~~~v~V~~-~g~~~~ad~VI~AvP~~~l~~~----~i~~~p~Lp~ 311 (688)
+.+.||++.|+++|++.++ |++|++|++|..++++|+|++ +|+++.||+||+|+|+.+|++. .+.|.|+||+
T Consensus 235 ~~i~gG~~~Li~~La~~L~~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~LP~ 314 (539)
T PLN02568 235 ITIAKGYLSVIEALASVLPPGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPPLPD 314 (539)
T ss_pred EEECCcHHHHHHHHHhhCCCCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCCCCH
Confidence 8899999999999999885 999999999999999999988 8889999999999999999853 2579999999
Q ss_pred HHHHHHHhcCCcceeEEEEEcCCcccccC-----CCCceeeecCCCC--C-Cc-eEEE---eeccc-cCCCcEEEEEecc
Q 005607 312 RKLDAIKRLGYGLLNKVAMLFPYVFWETD-----LDTFGHLTDDSSS--R-GE-FFLF---YSYAT-VAGGPLLIALVAG 378 (688)
Q Consensus 312 ~~~~ai~~l~~~~~~kV~l~f~~~~w~~~-----~~~~g~l~~~~~~--~-~~-~~~~---~~~~~-p~g~~vl~~~~~g 378 (688)
.+.+++++++++.+.||++.|+++||... ...+..+...... . .. ..++ ++... ..+.++|++|+.|
T Consensus 315 ~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~~~~G 394 (539)
T PLN02568 315 FKTDAISRLGFGVVNKLFVELSPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICPIHKNSSVLLSWFAG 394 (539)
T ss_pred HHHHHHHhcCCceeeEEEEEecCCCCCcccccccccceeeeecccchhhhcccccchhhccccccccCCCCCEEEEEecc
Confidence 99999999999999999999999998642 1222233222110 0 01 1111 01111 1356799999999
Q ss_pred hhhHhhcCCChHHHHHHHHHHHHhhcCCCCC-------------------CCCCCceEEEecCCCCCCCCcccCCCCCCC
Q 005607 379 EAAHKFESMPPTDAVTKVLQILKGIYEPKGI-------------------NVPEPIQTVCTRWGGDPFSLGSYSNVAVGA 439 (688)
Q Consensus 379 ~~a~~~~~ls~eel~~~vl~~L~~i~~~~~~-------------------~i~~p~~~~~~rW~~~p~~~Gay~~~~pG~ 439 (688)
+.+..++.++++++++.+++.|+++|+.... ..+.|+.+.+++|..|||+.|+|++++||.
T Consensus 395 ~~A~~~e~l~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~~GsYs~~~~g~ 474 (539)
T PLN02568 395 KEALELEKLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLGSYSYVAVGS 474 (539)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCccCCccCCCcCCC
Confidence 9999999999999999999999999974311 124788999999999999999999999999
Q ss_pred CcccHHHHhcccC-----------CCcEEEeecccccccCccchHHHHHHHHHHHHHHHHH
Q 005607 440 SGDDYDIMAESVG-----------DGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCA 489 (688)
Q Consensus 440 ~~~~~~~l~~pi~-----------~~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l 489 (688)
....++.|++|+. .++|||||++|+..|+|+||||+.||+|||++|+...
T Consensus 475 ~~~~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~~ 535 (539)
T PLN02568 475 SGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQHY 535 (539)
T ss_pred ChhHHHHHhCccccccccccccCCCccEEEeecccCCCccchHHHHHHHHHHHHHHHHHHh
Confidence 8878889999984 1379999999999999999999999999999999875
No 8
>PLN02676 polyamine oxidase
Probab=100.00 E-value=2.1e-47 Score=426.91 Aligned_cols=426 Identities=28% Similarity=0.494 Sum_probs=306.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCC-cEEEEecCCCCcceeeeeecCCCCCCCCceeeeccceeecC---CCCcHHHHHH
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTG---TLGNPLGILA 122 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~-~V~VLEa~~rvGGr~~S~~~~g~~g~~~~~~~D~G~~~~~~---~~~~~l~~L~ 122 (688)
++||+|||||++||+||++|++.|+ +|+|||+++++|||+.+....|. .+|+|++|+++ ...+++..++
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~-------~~d~g~~~~~~~~~~~~~~~~~l~ 98 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGV-------SVELGANWVEGVGGPESNPIWELA 98 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCe-------EEecCCEEEEcccCcccChHHHHH
Confidence 3899999999999999999999998 59999999999999999887665 99999999975 3468888999
Q ss_pred HHhCCceeeecC---CccEEecCCcccChhhhHHHHHHHHHHHHHHHHHHHHh-hccccCCCHHHHHHHHHHHhccCCCH
Q 005607 123 KQLGSLLHKVRD---KCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLRQLM-GEVAMDVSLGSALETFWRVYWDSGNA 198 (688)
Q Consensus 123 ~~LGl~~~~~~~---~~~~~~~~G~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~~~~~~~sl~~~l~~~~~~~~~~~~~ 198 (688)
+++|+....... ...++..+|+.++..........+..+......+.... ....++.++.+.. .+.... ....
T Consensus 99 ~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~--~~~~ 175 (487)
T PLN02676 99 NKLKLRTFYSDFDNLSSNIYKQDGGLYPKKVVQKSMKVADASDEFGENLSISLSAKKAVDISILTAQ-RLFGQV--PKTP 175 (487)
T ss_pred HhcCCceeecCccccceeEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCccHHHHH-HHHhhC--CCCH
Confidence 999998764322 23345557776643222111122222222111111111 1112344442221 122221 1111
Q ss_pred HHHHHHHHHHHhhhhccccchhhhHHHhhccCCCC-CCCCCeeec--CCChHHHHHHHHHcC-----------CcccCce
Q 005607 199 EAMNLFNWHLANLEYANASLLSKLSLAFWDQDDPY-DMGGDHCFL--PGGNGRLVQALVENV-----------PILYEKT 264 (688)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~g~~~~~--~gG~~~L~~~L~~~l-----------~I~lnt~ 264 (688)
.... ..+.....+ .+.....+++..+.....+ ..++..+++ ++|+++|++.|++.+ +|++|++
T Consensus 176 ~~~~-~~~~~~~~~--~~~~~~~~S~~~~~~~~~~~~~g~~~~~~~~~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~ 252 (487)
T PLN02676 176 LEMV-IDYYNYDYE--FAEPPRVTSLKNTEPNPTFVDFGEDEYFVADPRGYESLVYYLAEQFLSTKSGKITDPRLKLNKV 252 (487)
T ss_pred HHHH-HHHHhccce--eccCccccchhhcCcccccccCCCceEEeecCCCHHHHHHHHHhhcccccccccCCCceecCCE
Confidence 1111 222211111 2222333343332211112 233444555 689999999999854 4999999
Q ss_pred EEEEEecCCeEEEEE-CCEEEEecEEEEcCCCCcccCCccccCCCCCHHHHHHHHhcCCcceeEEEEEcCCcccccCCCC
Q 005607 265 VHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDT 343 (688)
Q Consensus 265 V~~I~~~~~~v~V~~-~g~~~~ad~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f~~~~w~~~~~~ 343 (688)
|++|..++++|+|++ +|++++||+||+|+|+.+|++..|.|.|+||+.+.+++++++++.+.||++.|+++||+.....
T Consensus 253 V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW~~~~~~ 332 (487)
T PLN02676 253 VREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYKFWPSGPGT 332 (487)
T ss_pred eeEEEEcCCcEEEEECCCCEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCCCCCCCCCCc
Confidence 999999999999998 7889999999999999999866699999999999999999999999999999999999863222
Q ss_pred ceeeecCCCCCCceEEEeec-cccCCCcEEEEEecchhhHhhcCCChHHHHHHHHHHHHhhcCCCCCCCCCCceEEEecC
Q 005607 344 FGHLTDDSSSRGEFFLFYSY-ATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRW 422 (688)
Q Consensus 344 ~g~l~~~~~~~~~~~~~~~~-~~p~g~~vl~~~~~g~~a~~~~~ls~eel~~~vl~~L~~i~~~~~~~i~~p~~~~~~rW 422 (688)
......... .+....+... ..+++.+++++++.++.+..+..+++++.++.++++|+++||+ .++.|+.+..++|
T Consensus 333 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~g~~a~~~~~~s~e~~~~~vl~~L~~~~g~---~~~~p~~~~~~~W 408 (487)
T PLN02676 333 EFFLYAHER-RGYYPFWQHLENEYPGSNVLFVTVTDEESRRIEQQPDSETKAEIMEVLRKMFGP---NIPEATDILVPRW 408 (487)
T ss_pred eeeeeeccc-cccchhhhhcccCCCCCCEEEEEechHHHHHHHhCCHHHHHHHHHHHHHHHhCC---CCCCcceEEeccc
Confidence 222222211 1111111111 1234556888889888899999999999999999999999974 3678899999999
Q ss_pred CCCCCCCcccCCCCCCCCcccHHHHhcccCCCcEEEeecccccccCccchHHHHHHHHHHHHHHHHHhh
Q 005607 423 GGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANA 491 (688)
Q Consensus 423 ~~~p~~~Gay~~~~pG~~~~~~~~l~~pi~~~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l~~ 491 (688)
..+||+.|+|++++||......+.+++|+ ++|||||++|+..|+||||||+.||++||++|++.++.
T Consensus 409 ~~dp~s~Gsys~~~pG~~~~~~~~L~~P~--gri~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~~l~~ 475 (487)
T PLN02676 409 WSNRFFKGSYSNWPIGVSRYEFDQIRAPV--GRVYFTGEHTSEKYNGYVHGAYLAGIDTANDLLECIKK 475 (487)
T ss_pred CCCCCCCcccCCCCCCCChhHHHHHhCCC--CceEEeccccccccccchHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999877788999998 89999999999888999999999999999999998854
No 9
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=100.00 E-value=8.5e-47 Score=396.30 Aligned_cols=432 Identities=31% Similarity=0.485 Sum_probs=319.9
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCC-cEEEEecCCCCcceeeeeecCCCCCCCCceeeeccceeecCCCCcHHHHHHH
Q 005607 45 SNKLRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAK 123 (688)
Q Consensus 45 ~~~~dVvIVGAGiaGLsAA~~L~k~G~-~V~VLEa~~rvGGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~ 123 (688)
.+..+|||||||+|||+||.+|.+.|+ +|+|||+++|+|||++|..+.++ .+|+||+|+++..+|+++.+++
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~-------~ielGAqwihG~~gNpVY~la~ 91 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADG-------VIELGAQWIHGEEGNPVYELAK 91 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCC-------eEeecceeecCCCCChHHHHHH
Confidence 345789999999999999999997765 69999999999999999999887 9999999999988999999999
Q ss_pred HhC-Cceeeec----CCccEEecCCcccChhhhHHHHHHHHHHHHHHHHHHHHhhccccCCCHHHHHH-HHHHHhccCCC
Q 005607 124 QLG-SLLHKVR----DKCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLRQLMGEVAMDVSLGSALE-TFWRVYWDSGN 197 (688)
Q Consensus 124 ~LG-l~~~~~~----~~~~~~~~~G~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~sl~~~l~-~~~~~~~~~~~ 197 (688)
++| +...... .....+..+|..++......+......+.... +.. .-..+..|+++++. .+.........
T Consensus 92 ~~g~~~~~~~tg~~~~~~~~~~~~g~~V~~~~~~~~~~~~~~~~~~~---r~~-~~~~~~~SvG~~ln~~~~~~~~~~e~ 167 (498)
T KOG0685|consen 92 EYGDLKLLEVTGPAYVDNFHTRSNGEVVPEELLDELNEITVTLSDKL---REA-EIAHDEGSVGEYLNSEFWDELRGPEN 167 (498)
T ss_pred HhCccceeccCCccccceeEEEecCccCcHHHHHHHHHHHHhhhhhc---ccc-cccCccccHHHHHHHHHHHHhccccc
Confidence 998 3222111 11223556777777655444333332221111 110 00145668888876 34444322222
Q ss_pred HH-HH----HHHHHHHHh-hhhccccchhhhHHHhhccCCCCCCCC--CeeecCCChHHHHHHHHHcCC-----------
Q 005607 198 AE-AM----NLFNWHLAN-LEYANASLLSKLSLAFWDQDDPYDMGG--DHCFLPGGNGRLVQALVENVP----------- 258 (688)
Q Consensus 198 ~~-~~----~~~~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~g--~~~~~~gG~~~L~~~L~~~l~----------- 258 (688)
++ .+ +.++.+... ......+.++.+++..+.... +..| .....+.|+..+.+.|++.++
T Consensus 168 ~~~~k~l~~~~~~~~~k~e~~~~~~d~l~evs~~~~~ey~--~~~ge~~~~~~~kGy~~iL~~l~~~~p~~~i~~~~~~~ 245 (498)
T KOG0685|consen 168 PEIDKTLAEEILNVYFKVECSITGADNLSEVSLRALLEYT--ECPGEELLIWNKKGYKRILKLLMAVIPAQNIELGLWKR 245 (498)
T ss_pred cchhhHHHHHHHHHHHHHheeeeccCchhhhhhhhcccee--ecCchhhheechhHHHHHHHHHhccCCCcchhcCchhh
Confidence 11 22 222221111 122233455666654433221 2233 456677899999999987542
Q ss_pred cccCceEEEEEecC-CeEEEEE-CCEEEEecEEEEcCCCCcccCC-ccccCCCCCHHHHHHHHhcCCcceeEEEEEcCCc
Q 005607 259 ILYEKTVHTIRYGS-DGVQVLA-GSQVFEGDMVLCTVPLGVLKSG-SIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYV 335 (688)
Q Consensus 259 I~lnt~V~~I~~~~-~~v~V~~-~g~~~~ad~VI~AvP~~~l~~~-~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f~~~ 335 (688)
++++++|.+|...+ +.|+|+. ||+.+.||+||||+++++|++. .-.|.|+||..+.++|+++.+++++||++.|.++
T Consensus 246 ~~~~~rv~~I~~~~~~~v~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP~~K~~AIe~lgfGtv~KiFLE~E~p 325 (498)
T KOG0685|consen 246 IHLNTRVENINWKNTGEVKLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFVPPLPAEKQRAIERLGFGTVNKIFLEFEEP 325 (498)
T ss_pred hcccccceeeccCCCCcEEEEEeCCcEEeccEEEEEeechhhhhhhhhhcCCCCCHHHHHHHHhccCCccceEEEEccCC
Confidence 55569999999886 5588888 9999999999999999999973 2348999999999999999999999999999999
Q ss_pred ccccCCCCceeeecCCC---CCC-------ceEEEeeccccCCCcEEEEEecchhhHhhcCCChHHHHHHHHHHHHhhcC
Q 005607 336 FWETDLDTFGHLTDDSS---SRG-------EFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYE 405 (688)
Q Consensus 336 ~w~~~~~~~g~l~~~~~---~~~-------~~~~~~~~~~p~g~~vl~~~~~g~~a~~~~~ls~eel~~~vl~~L~~i~~ 405 (688)
||+.+...+..++.+.+ .+. .++.|...+..+ .+|++|+.|..+..++.++++++.+.+...|++.++
T Consensus 326 fwp~~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~v~~~~--~vL~gWiaG~~~~~me~lsdEev~e~~~~~lr~fl~ 403 (498)
T KOG0685|consen 326 FWPSDWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQPVSWAP--NVLLGWIAGREARHMETLSDEEVLEGLTKLLRKFLK 403 (498)
T ss_pred CCCCCCceeEEEEecCcHHHHhhhhHHHHhhceEEEEcCcch--hhhheeccCCcceehhhCCHHHHHHHHHHHHHHhcC
Confidence 99998888888877654 111 123344333222 799999999999999999999999999999999998
Q ss_pred CCCCCCCCCceEEEecCCCCCCCCcccCCCCCCCCcccHHHHhccc------CCCcEEEeecccccccCccchHHHHHHH
Q 005607 406 PKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESV------GDGRLFFAGEATIRRYPATMHGAFLSGL 479 (688)
Q Consensus 406 ~~~~~i~~p~~~~~~rW~~~p~~~Gay~~~~pG~~~~~~~~l~~pi------~~~~L~fAGd~ts~~~~g~~eGAi~SG~ 479 (688)
. ..+|.|..+.++.|..+||++|+|++.++|+....-..+..|. +.+.|.|||++|+..+..+++||++||.
T Consensus 404 n--~~iP~p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p~p~~~~~~~p~I~FAGEaThr~~YsTthGA~~SG~ 481 (498)
T KOG0685|consen 404 N--PEIPKPKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALPLPLTLVTGRPQILFAGEATHRTFYSTTHGAVLSGW 481 (498)
T ss_pred C--CCCCCchhhhhhcccCCCccCceeeEeeccccccccchhhccCCccccCCCceEEEccccccccceehhhhhHHhhH
Confidence 3 4689999999999999999999999999998655444444433 3468999999999988999999999999
Q ss_pred HHHHHHHHHHhhhh
Q 005607 480 RETAKMAHCANARA 493 (688)
Q Consensus 480 ~AA~~Il~~l~~~~ 493 (688)
|+|++++..+....
T Consensus 482 REA~RL~~~y~~~~ 495 (498)
T KOG0685|consen 482 READRLLEHYESST 495 (498)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999776544
No 10
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.4e-44 Score=376.35 Aligned_cols=422 Identities=27% Similarity=0.380 Sum_probs=283.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceeeeeecCCCCCCCCceeeeccceeecCCCCcHHHHHHHHh
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQL 125 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~L 125 (688)
+++||||||||+|||+||++|.++|++|+|||+++|+|||+.+.+..+. ..|+|++++.+. .+.+..+++++
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~~~~-------~~d~gG~~i~p~-~~~~l~~~k~~ 77 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAGGE-------YTDLGGQYINPT-HDALLAYAKEF 77 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEeccce-------eeccCCcccCcc-chhhhhhHHhc
Confidence 4589999999999999999999999999999999999999999988444 999999999874 45667799999
Q ss_pred CCceeeecCC-ccEEecCCcccChh-hhH----HHHHHHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHhccCCCHH
Q 005607 126 GSLLHKVRDK-CPLYRLDGNSVDPE-IDM----KVEADFNRLLDKASRLRQLMGEVAMDVSLGSALETFWRVYWDSGNAE 199 (688)
Q Consensus 126 Gl~~~~~~~~-~~~~~~~G~~~~~~-~~~----~~~~~~~~ll~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~~~~~~~ 199 (688)
|++..++... ..+....+..-..+ ... .+......+... ......+......+.-+...+.+..|. ...
T Consensus 78 gv~~~~fi~~g~~~~~~~~~~~~~p~~~~~~~~d~~~~~~~~~~~-a~~~~~~~~~~t~~~~e~~~~~~~~W~----~~~ 152 (450)
T COG1231 78 GVPLEPFIRDGDNVIGYVGSSKSTPKRSLTAAADVRGLVAELEAK-ARSAGELDPGLTPEDRELDLESLAAWK----TSS 152 (450)
T ss_pred CCCCCceeccCcccccccccccccchhccchhhhhcchhhhhhhh-hhcccccCcccCcchhhhhhHHHHhhh----hcc
Confidence 9988765431 11111111100000 000 000000000000 000000000000000001111111110 000
Q ss_pred HHHHHHHHHHhhhhc-----cccchhhhH-HHhhc---cCCCCCCCCCeeecCCChHHHHHHHHHcC--CcccCceEEEE
Q 005607 200 AMNLFNWHLANLEYA-----NASLLSKLS-LAFWD---QDDPYDMGGDHCFLPGGNGRLVQALVENV--PILYEKTVHTI 268 (688)
Q Consensus 200 ~~~~~~~~~~~~~~~-----~~~~l~~l~-~~~~~---~~~~~~~~g~~~~~~gG~~~L~~~L~~~l--~I~lnt~V~~I 268 (688)
.+.+-...-..+... .-..+..+. ...+. ....++.....+...|||+.|++++++.+ .|+++.+|.+|
T Consensus 153 ~~~~~~~~~a~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~~~GGmd~la~Afa~ql~~~I~~~~~V~rI 232 (450)
T COG1231 153 LRGLSRDPGARVSPGPIEPGDVSLLHDALPLRSASVVDRGIGGEIRTQMLQRLGGMDQLAEAFAKQLGTRILLNEPVRRI 232 (450)
T ss_pred ccccccCccceeccCCCCcccccchhhhhhhhhhhhccccccccccchhhccCccHHHHHHHHHHHhhceEEecCceeeE
Confidence 000000000000000 000011111 11111 11222233334455599999999999987 49999999999
Q ss_pred EecCCeEEEEECC-EEEEecEEEEcCCCCcccCCccccCCCCCHHHHHHHHhcCCcceeEEEEEcCCcccccCCCCceee
Q 005607 269 RYGSDGVQVLAGS-QVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHL 347 (688)
Q Consensus 269 ~~~~~~v~V~~~g-~~~~ad~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f~~~~w~~~~~~~g~l 347 (688)
..++++|+|+++. +++.+|.||||+|+.++. .|+|.|.+++.++++++.++|++.+|+.+.|+++||++....-|..
T Consensus 233 ~q~~~gV~Vt~~~~~~~~ad~~i~tiPl~~l~--qI~f~P~l~~~~~~a~~~~~y~~~~K~~v~f~rpFWee~~~l~G~~ 310 (450)
T COG1231 233 DQDGDGVTVTADDVGQYVADYVLVTIPLAILG--QIDFAPLLPAEYKQAAKGVPYGSATKIGVAFSRPFWEEAGILGGES 310 (450)
T ss_pred EEcCCeEEEEeCCcceEEecEEEEecCHHHHh--hcccCCCCCHHHHHHhcCcCcchheeeeeecCchhhhhcccCCceE
Confidence 9999999999954 899999999999999998 6999999999999999999999999999999999999876222222
Q ss_pred ecCCCCCCceEEEeecccc-CCCcEEEE-EecchhhHhhcCCChHHHHHHHHHHHHhhcCCCCCCCCCCceE-EEecCCC
Q 005607 348 TDDSSSRGEFFLFYSYATV-AGGPLLIA-LVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQT-VCTRWGG 424 (688)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~p-~g~~vl~~-~~~g~~a~~~~~ls~eel~~~vl~~L~~i~~~~~~~i~~p~~~-~~~rW~~ 424 (688)
..+.. ..+..++.... .|..++.. |..+..+..|..+++++.++.++..|.++||+. ..++.+. ...+|.+
T Consensus 311 ~tD~~---~~~i~~~s~~~~~G~gVl~g~~~~g~~A~~~~~~~~~~r~~~vl~~l~~~~g~~---a~~~f~~~~~~~W~~ 384 (450)
T COG1231 311 LTDLG---LGFISYPSAPFADGPGVLLGSYAFGDDALVIDALPEAERRQKVLARLAKLFGDE---AADPFDYGASVDWSK 384 (450)
T ss_pred eecCC---cceEecCccccCCCceEEEeeeeccccceeEecCCHHHHHHHHHHhHhhhCChh---hccccccceeeeccc
Confidence 22211 22333333322 34445554 677999999999999999999999999999854 3455555 8899999
Q ss_pred CCCCCcccCCCCCCCCcccHHHHhcccCCCcEEEeecccccccCccchHHHHHHHHHHHHHHHHHh
Q 005607 425 DPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCAN 490 (688)
Q Consensus 425 ~p~~~Gay~~~~pG~~~~~~~~l~~pi~~~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l~ 490 (688)
+||+.|+|..+.||+....++.+..|. ++|||||+..++.++||||||++||.+||.+|...+.
T Consensus 385 dpwt~G~~aa~~~g~~~~~~~~l~~p~--gRIh~AgtEhas~~~Gw~eGAi~Sg~~AA~ei~~~l~ 448 (450)
T COG1231 385 DPWTLGGTAAYPPGQRTKLYPTLPAPH--GRIHFAGTEHASEFGGWLEGAIRSGQRAAAEIHALLS 448 (450)
T ss_pred CCcCCccccccCCcccccccccccCCC--CceEEeeecccccccchhHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999987 9999999555555899999999999999999998764
No 11
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=100.00 E-value=4.2e-38 Score=352.74 Aligned_cols=409 Identities=19% Similarity=0.236 Sum_probs=278.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHC----CCcEEEEecCCCCcceeeeeecCCCCCCCCceeeeccceeecCCCCcHHHHHH
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRL----GFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILA 122 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~----G~~V~VLEa~~rvGGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~ 122 (688)
++||+|||||+|||+||++|+++ |++|+|||+++++|||++|....|+ .+|.|+|+|...+.+ +..++
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~-------~~e~G~~~~~~~~~~-~~~l~ 73 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGY-------LIERGPDSFLERKKS-APDLV 73 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCE-------EEecCccccccCChH-HHHHH
Confidence 37999999999999999999999 9999999999999999999987765 999999999987644 77799
Q ss_pred HHhCCceeeec--CCccEEecC-CcccChhhhHHHHHHHHHHHHHHHHHHHHhh-----ccccCCCHHHHHHHHHHHhcc
Q 005607 123 KQLGSLLHKVR--DKCPLYRLD-GNSVDPEIDMKVEADFNRLLDKASRLRQLMG-----EVAMDVSLGSALETFWRVYWD 194 (688)
Q Consensus 123 ~~LGl~~~~~~--~~~~~~~~~-G~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-----~~~~~~sl~~~l~~~~~~~~~ 194 (688)
+++|++..... ....+++.+ |+.++.+..... .....++....+++..+. ....+.++.+|+... ++
T Consensus 74 ~~lgl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~e~l~~~---~g- 148 (462)
T TIGR00562 74 KDLGLEHVLVSDATGQRYVLVNRGKLMPVPTKIAP-FVKTGLFSLGGKLRAGMDFIRPASPGKDESVEEFVRRR---FG- 148 (462)
T ss_pred HHcCCCcccccCCCCceEEEECCCceecCCCChHH-HhcCCCCCchhhHHhhhhhccCCCCCCCcCHHHHHHHh---cC-
Confidence 99999765432 222333333 766544322110 000001111111111111 123457888877531 11
Q ss_pred CCCHHHHHHHHHHHHhhhhccccchhhh----------------HHHhhccC--------CCC--CCCCCeeecCCChHH
Q 005607 195 SGNAEAMNLFNWHLANLEYANASLLSKL----------------SLAFWDQD--------DPY--DMGGDHCFLPGGNGR 248 (688)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l----------------~~~~~~~~--------~~~--~~~g~~~~~~gG~~~ 248 (688)
......++.++...+.......++.. ........ ..+ ..+..+..+.||+++
T Consensus 149 --~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~ 226 (462)
T TIGR00562 149 --DEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTLATGLET 226 (462)
T ss_pred --HHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccccccccCCceEecchhHHH
Confidence 11111222222221111111110000 00000000 001 112226778999999
Q ss_pred HHHHHHHcC---CcccCceEEEEEecCCeEEEEE-CCEEEEecEEEEcCCCCcccCCccccCCCCCHHHHHHHHhcCCcc
Q 005607 249 LVQALVENV---PILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGL 324 (688)
Q Consensus 249 L~~~L~~~l---~I~lnt~V~~I~~~~~~v~V~~-~g~~~~ad~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~ 324 (688)
|+++|++.+ +|++|++|++|..++++|+|++ +|+++.||+||+|+|++.+.. +.|++++...+++.+++|.+
T Consensus 227 l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~----ll~~~~~~~~~~l~~l~~~~ 302 (462)
T TIGR00562 227 LPEEIEKRLKLTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHKAAAG----LLSELSNSASSHLDKIHSPP 302 (462)
T ss_pred HHHHHHHHhccCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHHHHHH----HhcccCHHHHHHHhcCCCCc
Confidence 999998876 4999999999999999999887 777899999999999999875 56778888899999999999
Q ss_pred eeEEEEEcCCcccccCCCCceeeecCCCCCCceEEEee-----ccccCCCcEEEEEecchhhHhhcCCChHHHHHHHHHH
Q 005607 325 LNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYS-----YATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQI 399 (688)
Q Consensus 325 ~~kV~l~f~~~~w~~~~~~~g~l~~~~~~~~~~~~~~~-----~~~p~g~~vl~~~~~g~~a~~~~~ls~eel~~~vl~~ 399 (688)
+.+|++.|++++|..+...++++.+.........+.++ ...|++..++++|+.+..+..+.+++++++++.++++
T Consensus 303 ~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~ 382 (462)
T TIGR00562 303 VANVNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVDLSENEIINIVLRD 382 (462)
T ss_pred eEEEEEEEchHHcCCCCCceEEEccCCCCCceEEEEEEccccCCcCCCCcEEEEEEeCCCCCccccCCCHHHHHHHHHHH
Confidence 99999999999888766678888764432222223332 3345666788899988777778889999999999999
Q ss_pred HHhhcCCCCCCCCCCceEEEecCCCCCCCCcccCCCCCCCCcc---cHHHHhcccCCCcEEEeecccccccCccchHHHH
Q 005607 400 LKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGD---DYDIMAESVGDGRLFFAGEATIRRYPATMHGAFL 476 (688)
Q Consensus 400 L~~i~~~~~~~i~~p~~~~~~rW~~~p~~~Gay~~~~pG~~~~---~~~~l~~pi~~~~L~fAGd~ts~~~~g~~eGAi~ 476 (688)
|.++++.. .+|....+++|.. ++....+|.... ..+.+..+. ++|++||+|+.. .+|++|+.
T Consensus 383 L~~~~gi~----~~p~~~~v~rw~~------a~P~~~~g~~~~~~~i~~~l~~~~--~~l~l~G~~~~g---~~i~~~i~ 447 (462)
T TIGR00562 383 LKKVLNIN----NEPEMLCVTRWHR------AIPQYHVGHDQRLKEARELLESAY--PGVFLTGNSFEG---VGIPDCID 447 (462)
T ss_pred HHHHhCCC----CCCcEEEEeEccc------cCCCCCCChHHHHHHHHHHHHhhC--CCEEEeccccCC---CcHHHHHH
Confidence 99999742 2478889999965 555556665321 112233333 799999999863 48999999
Q ss_pred HHHHHHHHHHHHH
Q 005607 477 SGLRETAKMAHCA 489 (688)
Q Consensus 477 SG~~AA~~Il~~l 489 (688)
||.++|++|++.+
T Consensus 448 sg~~~a~~~~~~~ 460 (462)
T TIGR00562 448 QGKAAASDVLTFL 460 (462)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998765
No 12
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=100.00 E-value=7.3e-37 Score=342.66 Aligned_cols=407 Identities=15% Similarity=0.155 Sum_probs=263.7
Q ss_pred CcEEEECccHHHHHHHHHHHHC------CCcEEEEecCCCCcceeeeeecCCCCCCCCceeeeccceeecCCCCcHHHHH
Q 005607 48 LRVLVIGAGLAGLAAARQLMRL------GFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGIL 121 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~------G~~V~VLEa~~rvGGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L 121 (688)
++|+|||||||||+||++|+++ |++|+|||+++|+|||++|.+..|. .+|+|+|++...+. .+..|
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~-------~~e~G~~~i~~~~~-~~~~l 73 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDF-------IMESGADSIVARNE-HVMPL 73 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCE-------EEecCcHHHhcCCH-HHHHH
Confidence 5799999999999999999986 3799999999999999999987765 99999999987654 46779
Q ss_pred HHHhCCceeeecC--CccEEecCCcccChhhhH------HHHHHHH-HHH---HHHHHHHHHhhc---cccCCCHHHHHH
Q 005607 122 AKQLGSLLHKVRD--KCPLYRLDGNSVDPEIDM------KVEADFN-RLL---DKASRLRQLMGE---VAMDVSLGSALE 186 (688)
Q Consensus 122 ~~~LGl~~~~~~~--~~~~~~~~G~~~~~~~~~------~~~~~~~-~ll---~~~~~~~~~~~~---~~~~~sl~~~l~ 186 (688)
+++||++...... ...+++.+|...+.+... .....+. .++ .....+...+.. ..++.|+.+|++
T Consensus 74 ~~~lgl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~ 153 (463)
T PRK12416 74 VKDLNLEEEMVYNETGISYIYSDNTLHPIPSDTIFGIPMSVESLFSSTLVSTKGKIVALKDFITKNKEFTKDTSLALFLE 153 (463)
T ss_pred HHHcCCccceecCCCCceEEEECCeEEECCCCCeecCCCChHHhhcCCcCCHHHHHHhhhhhccCCCCCCCCCCHHHHHH
Confidence 9999998664422 233434444433221110 0000110 011 111112121211 135678888875
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHhhhhccccchhhhH----------------HHhhccCC--CCCCCCCeeecCCChHH
Q 005607 187 TFWRVYWDSGNAEAMNLFNWHLANLEYANASLLSKLS----------------LAFWDQDD--PYDMGGDHCFLPGGNGR 248 (688)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~----------------~~~~~~~~--~~~~~g~~~~~~gG~~~ 248 (688)
.. ++ .+....++.+.+..+.......++..+ ..+..... .......+++++||+++
T Consensus 154 ~~---~~---~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~~~ 227 (463)
T PRK12416 154 SF---LG---KELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLST 227 (463)
T ss_pred Hh---cC---HHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCHHH
Confidence 31 11 111222333333222111111111100 00000000 00112246788999999
Q ss_pred HHHHHHHcC---CcccCceEEEEEecCCeEEEEE-CCEEEEecEEEEcCCCCcccCCccccCCCCCHHHHHHHHhcCCcc
Q 005607 249 LVQALVENV---PILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGL 324 (688)
Q Consensus 249 L~~~L~~~l---~I~lnt~V~~I~~~~~~v~V~~-~g~~~~ad~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~ 324 (688)
|+++|++.+ +|++|++|++|+.++++|.|++ +|+++.||+||+|+|++.+.. +.+.|.++ +.+.++.+.+
T Consensus 228 l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~~~~~~--ll~~~~l~----~~~~~~~~~~ 301 (463)
T PRK12416 228 IIDRLEEVLTETVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPHDIAET--LLQSNELN----EQFHTFKNSS 301 (463)
T ss_pred HHHHHHHhcccccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCHHHHHh--hcCCcchh----HHHhcCCCCc
Confidence 999999877 4999999999999999998887 778899999999999988874 33445544 4567888999
Q ss_pred eeEEEEEcCCcccccCCCCceeeecCCCCCCceEEEeec-----cccCCCcEEEEEec--chhhHhhcCCChHHHHHHHH
Q 005607 325 LNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSY-----ATVAGGPLLIALVA--GEAAHKFESMPPTDAVTKVL 397 (688)
Q Consensus 325 ~~kV~l~f~~~~w~~~~~~~g~l~~~~~~~~~~~~~~~~-----~~p~g~~vl~~~~~--g~~a~~~~~ls~eel~~~vl 397 (688)
+.+|++.|+.++|..+...+|++.+.........+.+.. ..+++..+++.++. +..+..+..++++++++.++
T Consensus 302 ~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~dee~~~~~~ 381 (463)
T PRK12416 302 LISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPVYETIKNYSEEELVRVAL 381 (463)
T ss_pred eEEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCCCchhhhcCCHHHHHHHHH
Confidence 999999999887765556788887654322111122221 12333334444553 35667788899999999999
Q ss_pred HHHHhhcCCCCCCCCCCceEEEecCCCCCCCCcccCCCCCCCCc---ccHHHHhcccCCCcEEEeecccccccCccchHH
Q 005607 398 QILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASG---DDYDIMAESVGDGRLFFAGEATIRRYPATMHGA 474 (688)
Q Consensus 398 ~~L~~i~~~~~~~i~~p~~~~~~rW~~~p~~~Gay~~~~pG~~~---~~~~~l~~pi~~~~L~fAGd~ts~~~~g~~eGA 474 (688)
++|+++||.. ..|+...+++|.. +++...+|+.. ...+.+..+. ++||+||+++.. .+|++|
T Consensus 382 ~~L~~~lG~~----~~p~~~~v~~W~~------a~P~y~~~~~~~~~~~~~~l~~~~--~~l~~aG~~~~g---~~i~~a 446 (463)
T PRK12416 382 YDIEKSLGIK----GEPEVVEVTNWKD------LMPKYHLEHNQAVQSLQEKMMNLY--PNIYLAGASYYG---VGIGAC 446 (463)
T ss_pred HHHHHHhCCC----CCceEEEEEEccc------cCCCcCcCHHHHHHHHHHHHHhhC--CCeEEecccccc---ccHHHH
Confidence 9999999853 4788899999975 22222233211 1123444444 799999999874 479999
Q ss_pred HHHHHHHHHHHHHHH
Q 005607 475 FLSGLRETAKMAHCA 489 (688)
Q Consensus 475 i~SG~~AA~~Il~~l 489 (688)
+.||++||++|+..+
T Consensus 447 i~sg~~aA~~i~~~~ 461 (463)
T PRK12416 447 IGNGKNTANEIIATL 461 (463)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998764
No 13
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=100.00 E-value=1.4e-37 Score=342.95 Aligned_cols=415 Identities=29% Similarity=0.402 Sum_probs=268.2
Q ss_pred HHHHHHHHHHHHCCCcEEEEecCCCCcceeeeeecC--CCCCCCCceeeeccceeecCCCCcHHHHHHHHhCCc--eeee
Q 005607 57 LAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKME--GGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSL--LHKV 132 (688)
Q Consensus 57 iaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~S~~~~--g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~LGl~--~~~~ 132 (688)
||||+||++|+++|++|+|||+++|+|||++|.+.+ |. .+|+|+++|++.+.+ +..++.++|+. ....
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~~g~-------~~e~G~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 72 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDNPGF-------TFELGAHRFFGMYPN-LLNLIDELGLELSLETF 72 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETTTTE-------EEESSS-EEETTSHH-HHHHHHHHTHHTTEEEE
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCccce-------eecCCcccccccchh-hHHHHHHhhhccccccc
Confidence 799999999999999999999999999999999998 54 999999999887655 66688888874 2222
Q ss_pred c-CC-ccEEecCCcccC--hh-hhHH-------------HHHHHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHhcc
Q 005607 133 R-DK-CPLYRLDGNSVD--PE-IDMK-------------VEADFNRLLDKASRLRQLMGEVAMDVSLGSALETFWRVYWD 194 (688)
Q Consensus 133 ~-~~-~~~~~~~G~~~~--~~-~~~~-------------~~~~~~~ll~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~~ 194 (688)
. .. ...+...+.... .. .... ....+.........+....... ...........+..+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 151 (450)
T PF01593_consen 73 PFPQIPFVYWPFGDGRPPWPPSQLPRNLNEFAALISLARFFRLLERLNKLRQMLDPFFNKA-EPEFLEDDLESFLEFLDS 151 (450)
T ss_dssp EESSEEEEEEEEEEEEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred ccccceeeeccccccccccccccccccccchhhhhhccccccccccccchhccchhhhhhh-hhhhhhhhhhhhhhhhhh
Confidence 1 11 111111111110 00 0000 0000000000000000000000 000000000111111000
Q ss_pred -CCCHHH-----HHHHHHHHHhhhhccccchhhhHHHhhccC--CCCCCCCCeeecCCChHHHHHHHHH--cCCcccCce
Q 005607 195 -SGNAEA-----MNLFNWHLANLEYANASLLSKLSLAFWDQD--DPYDMGGDHCFLPGGNGRLVQALVE--NVPILYEKT 264 (688)
Q Consensus 195 -~~~~~~-----~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~--~~~~~~g~~~~~~gG~~~L~~~L~~--~l~I~lnt~ 264 (688)
...... ...+......................+... ......+......|++..+...+.. +.+|++|++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~i~l~~~ 231 (450)
T PF01593_consen 152 QSFSEIFRESLFRPFFFGAFGFLPDESSAALALLSFPHFDLQDNGGYFPFGGLTVGMGGLSLALALAAEELGGEIRLNTP 231 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHHHHHCHHHHHHHHTTSSTEEEETTTTHHHHHHHHHHHGGGEESSEE
T ss_pred hhhhhhhHHHHHHhhhhhhhccccchhhhhHHHhhhhhcccccccccccccceeecccchhHHHHHHHhhcCceeecCCc
Confidence 000000 111111111111111111111111111100 0011223344556777777776655 558999999
Q ss_pred EEEEEecCCeEEEEE-CCEEEEecEEEEcCCCCcccCCccccCCCCCHHHHHHHHhcCCcceeEEEEEcCCcccccCCCC
Q 005607 265 VHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDT 343 (688)
Q Consensus 265 V~~I~~~~~~v~V~~-~g~~~~ad~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f~~~~w~~~~~~ 343 (688)
|++|+.++++|+|++ +|++++||+||+|+|+..+.+ +.+.|++|....++++++++.++.+|++.|+.++|..+...
T Consensus 232 V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~--i~~~p~l~~~~~~a~~~~~~~~~~~v~l~~~~~~~~~~~~~ 309 (450)
T PF01593_consen 232 VTRIEREDGGVTVTTEDGETIEADAVISAVPPSVLKN--ILLLPPLPEDKRRAIENLPYSSVSKVFLGFDRPFWPPDIDF 309 (450)
T ss_dssp EEEEEEESSEEEEEETTSSEEEESEEEE-S-HHHHHT--SEEESTSHHHHHHHHHTEEEEEEEEEEEEESSGGGGSTTTE
T ss_pred ceeccccccccccccccceEEecceeeecCchhhhhh--hhhcccccccccccccccccCcceeEEEeeecccccccccc
Confidence 999999999999998 888999999999999999984 67899999989999999999999999999999999987666
Q ss_pred ceeeecCCCCCCceEEEeecccc--CCCcEEEEEecchhhHhhcCCChHHHHHHHHHHHHhhcCCCCCCCCCCceEEEec
Q 005607 344 FGHLTDDSSSRGEFFLFYSYATV--AGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTR 421 (688)
Q Consensus 344 ~g~l~~~~~~~~~~~~~~~~~~p--~g~~vl~~~~~g~~a~~~~~ls~eel~~~vl~~L~~i~~~~~~~i~~p~~~~~~r 421 (688)
++++..+.... ...++.....+ ++..+++.|+.++.+..+..++++++++.++++|+++++. ..+++|.++.+++
T Consensus 310 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~ 386 (450)
T PF01593_consen 310 FGILYSDGFSP-IGYVSDPSKFPGRPGGGVLTSYVGGPDAPEWDDLSDEEILERVLDDLRKILPG--ASIPDPIDITVTR 386 (450)
T ss_dssp SEEEEESSTSS-EEEEEEECCTTSCTTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHHHHHHHHTT--GGGGEESEEEEEE
T ss_pred cceecccCccc-cccccccccCcccccCCcceeeeeccccchhcccchhhhHHHHHHHhhhcccc--ccccccccccccc
Confidence 77777655222 22222222222 3577889999888888899999999999999999999984 2467888899999
Q ss_pred CCCCCCCCcccCCCCCCCCcccHHHHhcccCCCcEEEeecccccccCccchHHHHHHHHHHHHHH
Q 005607 422 WGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMA 486 (688)
Q Consensus 422 W~~~p~~~Gay~~~~pG~~~~~~~~l~~pi~~~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il 486 (688)
|..+++..++|.+..++.....++.+.+|+. +||||||||+++.+.|+|+||+.||++||++|+
T Consensus 387 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~aG~~~~~~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 387 WSRDPYPRGSYSYFPPGQSSQFRPALRTPID-PGLYFAGDWTSPGYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp CTTSTTTSSSCECHCTTHHHHHHHHHHSCBT-TTEEE-SGGGSSSSTTSHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccCCcc-eEEEEeecccCCCCCCcHHHHHHHHHHHHHHhC
Confidence 9999999999998888876446788899883 599999999998777999999999999999986
No 14
>PLN02576 protoporphyrinogen oxidase
Probab=100.00 E-value=8.4e-37 Score=345.17 Aligned_cols=413 Identities=19% Similarity=0.194 Sum_probs=270.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC-CCcEEEEecCCCCcceeeeeecCCCCCCCCceeeeccceeecCCCCcHHHHHHHH
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRL-GFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQ 124 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~-G~~V~VLEa~~rvGGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~ 124 (688)
.++||+|||||+|||+||++|+++ |++|+|||+++++|||++|.+.+|+ .+|.|+|++...+ ..+..++++
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~g~-------~~d~G~~~~~~~~-~~~~~l~~~ 82 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDGF-------IWEEGPNSFQPSD-PELTSAVDS 82 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccCCe-------EEecCCchhccCc-HHHHHHHHc
Confidence 348999999999999999999999 9999999999999999999988765 9999999997654 345556666
Q ss_pred hCCceeeec---CCccEEecCCcccChhhhHHHHHHHHHHHHHHHHHHH---Hh-----hccccCCCHHHHHHHHHHHhc
Q 005607 125 LGSLLHKVR---DKCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLRQ---LM-----GEVAMDVSLGSALETFWRVYW 193 (688)
Q Consensus 125 LGl~~~~~~---~~~~~~~~~G~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~-----~~~~~~~sl~~~l~~~~~~~~ 193 (688)
|++..... ....+++.+|+..+.+..... .....++....+++. .+ .....+.++.+|+... ++
T Consensus 83 -gl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~---~g 157 (496)
T PLN02576 83 -GLRDDLVFPDPQAPRYVVWNGKLRPLPSNPID-LPTFDLLSAPGKIRAGLGAFGWKRPPPPGREESVGEFVRRH---LG 157 (496)
T ss_pred -CChhheecCCCCceEEEEECCEEEEcCCChHH-hcCcCcCChhHHHHHhHHHhhccCCCCCCCCCcHHHHHHHh---cC
Confidence 87644321 122344557776544432110 000111111111111 11 1114577888887531 11
Q ss_pred cCCCHHHHHHHHHHHHhhhhccccchhhh--------------------HHHhhcc--------CC---CCCCCCCeeec
Q 005607 194 DSGNAEAMNLFNWHLANLEYANASLLSKL--------------------SLAFWDQ--------DD---PYDMGGDHCFL 242 (688)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--------------------~~~~~~~--------~~---~~~~~g~~~~~ 242 (688)
......++.+++..+...+...++.. ....... .+ ....+...+.+
T Consensus 158 ---~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (496)
T PLN02576 158 ---DEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGSF 234 (496)
T ss_pred ---HHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccccccccccCCeeEec
Confidence 11112222222222111111111000 0000000 00 00012335778
Q ss_pred CCChHHHHHHHHHcCC---cccCceEEEEEecCCe-EEEEE---CC-EEEEecEEEEcCCCCcccCCccccCCCCCHHHH
Q 005607 243 PGGNGRLVQALVENVP---ILYEKTVHTIRYGSDG-VQVLA---GS-QVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKL 314 (688)
Q Consensus 243 ~gG~~~L~~~L~~~l~---I~lnt~V~~I~~~~~~-v~V~~---~g-~~~~ad~VI~AvP~~~l~~~~i~~~p~Lp~~~~ 314 (688)
+||+++|+++|++.+. |++|++|++|+..+++ |.|+. +| +++.||+||+|+|+.++.. +.+++++...
T Consensus 235 ~gG~~~L~~~la~~l~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~----ll~~~~~~~~ 310 (496)
T PLN02576 235 RGGLQTLPDALAKRLGKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSE----MLRPKSPAAA 310 (496)
T ss_pred cchHHHHHHHHHHhhCcCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCHHHHHH----HhcccCHHHH
Confidence 9999999999998774 9999999999998886 66654 44 4799999999999999986 3455667788
Q ss_pred HHHHhcCCcceeEEEEEcCCccccc------CCCCceeeecCCCCCCceE-EEeec----cccCCCcEEEEEecchhhHh
Q 005607 315 DAIKRLGYGLLNKVAMLFPYVFWET------DLDTFGHLTDDSSSRGEFF-LFYSY----ATVAGGPLLIALVAGEAAHK 383 (688)
Q Consensus 315 ~ai~~l~~~~~~kV~l~f~~~~w~~------~~~~~g~l~~~~~~~~~~~-~~~~~----~~p~g~~vl~~~~~g~~a~~ 383 (688)
+.+..++|.++.+|++.|++++|.. +...++.+........... .+.+. ..|++..+++.|+.+..+..
T Consensus 311 ~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~~~~~~l~~~~~~~~~~~ 390 (496)
T PLN02576 311 DALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAPEGRVLLLNYIGGSRNTG 390 (496)
T ss_pred HHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCCCCCCEEEEEEECCCCCcc
Confidence 8999999999999999999999876 4456777664332211111 22222 23455667888998887788
Q ss_pred hcCCChHHHHHHHHHHHHhhcCCCCCCCCCCceEEEecCCCCCCCCcccCCCCCCCCcccHHHHhcccC---CCcEEEee
Q 005607 384 FESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVG---DGRLFFAG 460 (688)
Q Consensus 384 ~~~ls~eel~~~vl~~L~~i~~~~~~~i~~p~~~~~~rW~~~p~~~Gay~~~~pG~~~~~~~~l~~pi~---~~~L~fAG 460 (688)
+..++++++++.++++|.++++.. ..+.|....+++|.. +++.+.+|+.. ..+.+.+.+. .++||+||
T Consensus 391 ~~~~s~ee~~~~~~~~L~~~~g~~--~~~~p~~~~~~~w~~------a~P~~~~g~~~-~~~~~~~~l~~~~~~~l~~aG 461 (496)
T PLN02576 391 IASASEEELVEAVDRDLRKLLLKP--GAPPPKVVGVRVWPK------AIPQYLLGHLD-VLEAAEKMEKDLGLPGLFLGG 461 (496)
T ss_pred cccCCHHHHHHHHHHHHHHHhCCC--CCCCCcEEEEeEcCc------ccCCCCcCHHH-HHHHHHHHHHhcCCCCEEEec
Confidence 888999999999999999999853 234667777889965 44444455431 1222222221 16999999
Q ss_pred cccccccCccchHHHHHHHHHHHHHHHHHh
Q 005607 461 EATIRRYPATMHGAFLSGLRETAKMAHCAN 490 (688)
Q Consensus 461 d~ts~~~~g~~eGAi~SG~~AA~~Il~~l~ 490 (688)
+|+.. .++++|+.||.++|++|+..+.
T Consensus 462 ~~~~g---~~i~~ai~sg~~aA~~i~~~~~ 488 (496)
T PLN02576 462 NYRGG---VALGKCVESGYEAADLVISYLE 488 (496)
T ss_pred cccCC---ccHHHHHHHHHHHHHHHHHHHh
Confidence 99984 4899999999999999998764
No 15
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=100.00 E-value=1e-35 Score=332.31 Aligned_cols=405 Identities=22% Similarity=0.248 Sum_probs=259.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCC--CcEEEEecCCCCcceeeeeecCCCCCCCCceeeeccceeecCCCCcHHHHHHHHh
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLG--FRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQL 125 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G--~~V~VLEa~~rvGGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~L 125 (688)
++|||||||+|||+||+.|+++| ++|+|||+++++|||++|.+..|. .+|+|+|++.+.+.+ +..+++++
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g~-------~~d~G~~~~~~~~~~-~~~l~~~l 72 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGF-------PIELGPESFLARKPS-APALVKEL 72 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCCe-------EEecChHHhcCCcHH-HHHHHHHc
Confidence 46999999999999999999988 899999999999999999988776 999999988876544 77899999
Q ss_pred CCceeeecC--CccEEecCCcccChhhhH------HHHHH-HHHHHHHHHHHHHHh------hccccCCCHHHHHHHHHH
Q 005607 126 GSLLHKVRD--KCPLYRLDGNSVDPEIDM------KVEAD-FNRLLDKASRLRQLM------GEVAMDVSLGSALETFWR 190 (688)
Q Consensus 126 Gl~~~~~~~--~~~~~~~~G~~~~~~~~~------~~~~~-~~~ll~~~~~~~~~~------~~~~~~~sl~~~l~~~~~ 190 (688)
|++...... ...+++.+|+....+... ..... ...++....+++... ....++.++.+++..
T Consensus 73 gl~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~l~~--- 149 (451)
T PRK11883 73 GLEDELVANTTGQSYIYVNGKLHPIPPGTVMGIPTSIAPFLFAGLVSPIGKLRAAADLRPPRWKPGQDQSVGAFFRR--- 149 (451)
T ss_pred CCccceecCCCCcceEEECCeEEECCCCCeeccCCCchhhhcCCCCCHHHHHHhhCcccCCCCCCCCCcCHHHHHHH---
Confidence 997554322 334455566543322110 00000 011111111111111 111356778887753
Q ss_pred HhccCCCHHHHHHHHHHHHhhhhccccchhhhH----------------HHhhccCCCC--CCCCCeeecCCChHHHHHH
Q 005607 191 VYWDSGNAEAMNLFNWHLANLEYANASLLSKLS----------------LAFWDQDDPY--DMGGDHCFLPGGNGRLVQA 252 (688)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~----------------~~~~~~~~~~--~~~g~~~~~~gG~~~L~~~ 252 (688)
.++ ......++.+.+..+.......++... .......... ..+..++++++|++.|+++
T Consensus 150 ~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~ 226 (451)
T PRK11883 150 RFG---DEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGLQSLIEA 226 (451)
T ss_pred hcc---HHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHHHHHHHH
Confidence 111 111122222222221111111111000 0000000000 1233467889999999999
Q ss_pred HHHcCC---cccCceEEEEEecCCeEEEEE-CCEEEEecEEEEcCCCCcccCCccccCCCCCHHHHHHHHhcCCcceeEE
Q 005607 253 LVENVP---ILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKV 328 (688)
Q Consensus 253 L~~~l~---I~lnt~V~~I~~~~~~v~V~~-~g~~~~ad~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~~kV 328 (688)
|++.++ |++|++|++|+.++++|+|++ +|+++.||+||+|+|++.+.+. . + ++...++++++++.++.+|
T Consensus 227 l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~~~~l--~--~--~~~~~~~~~~~~~~~~~~v 300 (451)
T PRK11883 227 LEEKLPAGTIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPVLPSL--F--V--APPAFALFKTIPSTSVATV 300 (451)
T ss_pred HHHhCcCCeEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHHHHHh--c--c--ChhHHHHHhCCCCCceEEE
Confidence 998774 999999999999999998887 8889999999999999999862 1 1 2345678899999999999
Q ss_pred EEEcCCcccccCCCCceeeecCCCCCCceEE-Eee----ccccCCCcEEEEEecchhhHhhcCCChHHHHHHHHHHHHhh
Q 005607 329 AMLFPYVFWETDLDTFGHLTDDSSSRGEFFL-FYS----YATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGI 403 (688)
Q Consensus 329 ~l~f~~~~w~~~~~~~g~l~~~~~~~~~~~~-~~~----~~~p~g~~vl~~~~~g~~a~~~~~ls~eel~~~vl~~L~~i 403 (688)
++.|+++++. ....++++...........+ +.+ ...|++..++..+++.........++++++++.++++|+++
T Consensus 301 ~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 379 (451)
T PRK11883 301 ALAFPESATN-LPDGTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELVAFVLADLSKV 379 (451)
T ss_pred EEEeccccCC-CCCceEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCCchhccCCHHHHHHHHHHHHHHH
Confidence 9999998632 22345555442111111112 222 22344455555555444344456789999999999999999
Q ss_pred cCCCCCCCCCCceEEEecCCCCCCCCcccCCCCCCCCcccHHHHhcccC-CCcEEEeecccccccCccchHHHHHHHHHH
Q 005607 404 YEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVG-DGRLFFAGEATIRRYPATMHGAFLSGLRET 482 (688)
Q Consensus 404 ~~~~~~~i~~p~~~~~~rW~~~p~~~Gay~~~~pG~~~~~~~~l~~pi~-~~~L~fAGd~ts~~~~g~~eGAi~SG~~AA 482 (688)
++.. .++....+++|.. +|+.+.||.. .....+..++. .++|||||+|+.+ ++|++|+.||+++|
T Consensus 380 ~g~~----~~~~~~~~~rw~~------a~p~~~~~~~-~~~~~l~~~l~~~~~l~~aG~~~~g---~~i~~av~sg~~~a 445 (451)
T PRK11883 380 MGIT----GDPEFTIVQRWKE------AMPQYGVGHI-ERVAELRAGLPHYPGLYVAGASFEG---VGLPDCIAQAKRAA 445 (451)
T ss_pred hCCC----CCceEEEEeecCc------cCCCCCccHH-HHHHHHHHhhhhCCCEEEECcccCC---ccHHHHHHHHHHHH
Confidence 9743 3567889999976 5555566652 22333333322 1699999999863 57999999999999
Q ss_pred HHHHH
Q 005607 483 AKMAH 487 (688)
Q Consensus 483 ~~Il~ 487 (688)
++|+.
T Consensus 446 ~~i~~ 450 (451)
T PRK11883 446 ARLLA 450 (451)
T ss_pred HHHHh
Confidence 99975
No 16
>PRK07233 hypothetical protein; Provisional
Probab=100.00 E-value=5.7e-34 Score=316.43 Aligned_cols=407 Identities=18% Similarity=0.202 Sum_probs=252.9
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceeeeeecCCCCCCCCceeeeccceeecCCCCcHHHHHHHHhCCc
Q 005607 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSL 128 (688)
Q Consensus 49 dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~LGl~ 128 (688)
+|||||||+|||+||++|+++|++|+|||+++++||++.|++.+|+ .+|.|+|++...+ ..+..+++++|+.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~-------~~d~g~~~~~~~~-~~~~~l~~~lg~~ 72 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGL-------PIERFYHHIFKSD-EALLELLDELGLE 72 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCc-------chhhhhhhhcccc-HHHHHHHHHcCCC
Confidence 5999999999999999999999999999999999999999988776 9999999997664 4577899999986
Q ss_pred eeeec-CCccEEecCCcccChhhhHHHH-----HHHHHHHHHHHHHHHHh-h--ccccCCCHHHHHHHHHHHhccCCCHH
Q 005607 129 LHKVR-DKCPLYRLDGNSVDPEIDMKVE-----ADFNRLLDKASRLRQLM-G--EVAMDVSLGSALETFWRVYWDSGNAE 199 (688)
Q Consensus 129 ~~~~~-~~~~~~~~~G~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~-~--~~~~~~sl~~~l~~~~~~~~~~~~~~ 199 (688)
..... .....++.+|...+........ .....+......+.... . ...++.++.+++... . ..+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~---~---~~~~ 146 (434)
T PRK07233 73 DKLRWRETKTGYYVDGKLYPLGTPLELLRFPHLSLIDKFRLGLLTLLARRIKDWRALDKVPAEEWLRRW---S---GEGV 146 (434)
T ss_pred CceeeccCceEEEECCeEecCCCHHHHHcCCCCCHHHHHHhHHHHHhhhhcccccccccccHHHHHHHh---c---CHHH
Confidence 44222 2222233345433321110000 00000000000000000 0 113456777776532 1 1223
Q ss_pred HHHHHHHHHHhhhhccccchhhhHHHh-hccC--CCCC-CCCCeeecCCChHHHHHHHHH-----cCCcccCceEEEEEe
Q 005607 200 AMNLFNWHLANLEYANASLLSKLSLAF-WDQD--DPYD-MGGDHCFLPGGNGRLVQALVE-----NVPILYEKTVHTIRY 270 (688)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~--~~~~-~~g~~~~~~gG~~~L~~~L~~-----~l~I~lnt~V~~I~~ 270 (688)
...++.+.+..+.......++...... .... .... ......+++||++.|+++|++ +.+|++|++|++|+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~ 226 (434)
T PRK07233 147 YEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVI 226 (434)
T ss_pred HHHHHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEE
Confidence 334455444433333333332211111 0000 0000 122367889999999999976 456999999999999
Q ss_pred cCCeEEEEE-CCEEEEecEEEEcCCCCcccCCccccCCCCCHHHHHHHHhcCCcceeEEEEEcCCcccccCCCCceeeec
Q 005607 271 GSDGVQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTD 349 (688)
Q Consensus 271 ~~~~v~V~~-~g~~~~ad~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f~~~~w~~~~~~~g~l~~ 349 (688)
+++++++.. +++++.||+||+|+|+..+.+ +.|.+++...+.++.+.+.+..++++.|+++.+. .+.....
T Consensus 227 ~~~~~~~~~~~~~~~~ad~vI~a~p~~~~~~----ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~ 298 (434)
T PRK07233 227 DGGGVTGVEVDGEEEDFDAVISTAPPPILAR----LVPDLPADVLARLRRIDYQGVVCMVLKLRRPLTD----YYWLNIN 298 (434)
T ss_pred cCCceEEEEeCCceEECCEEEECCCHHHHHh----hcCCCcHHHHhhhcccCccceEEEEEEecCCCCC----Cceeeec
Confidence 888876554 788999999999999988875 4477777777888999999999999999987543 1111111
Q ss_pred CCCCCCceEEEee----ccccCCCcEE--EEEecchhhHhhcCCChHHHHHHHHHHHHhhcCCCCCCCCCCceEEEecCC
Q 005607 350 DSSSRGEFFLFYS----YATVAGGPLL--IALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWG 423 (688)
Q Consensus 350 ~~~~~~~~~~~~~----~~~p~g~~vl--~~~~~g~~a~~~~~ls~eel~~~vl~~L~~i~~~~~~~i~~p~~~~~~rW~ 423 (688)
.+..........+ ...|++..++ .+|+.+.. .+..++++++++.++++|.+++|.. ....+....+.+|
T Consensus 299 ~~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~~~~p~~--~~~~~~~~~~~r~- 373 (434)
T PRK07233 299 DPGAPFGGVIEHTNLVPPERYGGEHLVYLPKYLPGDH--PLWQMSDEELLDRFLSYLRKMFPDF--DRDDVRAVRISRA- 373 (434)
T ss_pred CCCCCcceEEEecccCCccccCCceEEEEeeecCCCC--hhhcCCHHHHHHHHHHHHHHhCCCC--ChhheeeEEEEEe-
Confidence 1111101111111 1123445443 34544433 2446789999999999999999732 1223444445555
Q ss_pred CCCCCCcccCCCCCCCCcccHHHHhcccCCCcEEEeecccccccCccchHHHHHHHHHHHHHHHHHh
Q 005607 424 GDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCAN 490 (688)
Q Consensus 424 ~~p~~~Gay~~~~pG~~~~~~~~l~~pi~~~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l~ 490 (688)
+++.+. ..||.. ...+.+.+|+ +|||||||++...+.++|++|+.||.+||++|++.++
T Consensus 374 --~~a~~~---~~~g~~-~~~~~~~~~~--~~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~~~~ 432 (434)
T PRK07233 374 --PYAQPI---YEPGYL-DKIPPYDTPI--EGLYLAGMSQIYPEDRSINGSVRAGRRVAREILEDRR 432 (434)
T ss_pred --cccccc---ccCchh-hcCCCcccCc--CCEEEeCCcccCCccCchhHHHHHHHHHHHHHhhhhc
Confidence 343333 345532 3344566676 8999999965433456999999999999999998764
No 17
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=100.00 E-value=3.4e-33 Score=312.18 Aligned_cols=406 Identities=20% Similarity=0.237 Sum_probs=246.9
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceeeeeec-CCCCCCCCceeeeccceeecCCCCcHHHHHHHHhCC
Q 005607 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKM-EGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGS 127 (688)
Q Consensus 49 dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~S~~~-~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~LGl 127 (688)
+|+|||||++||+||++|+++|++|+|||+++++||+++|+.. .|. .+|.|+|++.+.+.+ +..++++||+
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~-------~~d~G~~~~~~~~~~-~~~l~~~lg~ 72 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGD-------WYETGLHIFFGAYPN-MLQLLKELNI 72 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCC-------EEEcCcceeccCCch-HHHHHHHcCC
Confidence 5999999999999999999999999999999999999999853 444 899999999887665 5679999998
Q ss_pred ceeeec-CCccEEec---CCcc-------cChhhhHHHHHH-HHH---HHHHHH---HHHHH-h---h--ccccCCCHHH
Q 005607 128 LLHKVR-DKCPLYRL---DGNS-------VDPEIDMKVEAD-FNR---LLDKAS---RLRQL-M---G--EVAMDVSLGS 183 (688)
Q Consensus 128 ~~~~~~-~~~~~~~~---~G~~-------~~~~~~~~~~~~-~~~---ll~~~~---~~~~~-~---~--~~~~~~sl~~ 183 (688)
...... .....+.. ++.. ++.+........ ... +.+.+. .+... . . ...++.++.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 152 (453)
T TIGR02731 73 EDRLQWKSHSMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILRNNDMLTWPEKIKFAIGLLPAIVRGQKYVEEQDKYTVTE 152 (453)
T ss_pred ccceeecCCceEEecCCCCcceeeccCCCCCCCHHHHHHHhcCcCCCCHHHHHHHHHHhHHHHhcCccchhhhccCCHHH
Confidence 644321 11122211 1111 111111100000 000 001110 01110 0 0 0135677777
Q ss_pred HHHHHHHHhccCCCHHHH-HHHHHHHHhhhhccccchhhhHHHhhccC-CCCCCCCCeeecCCC-hHHHHHHHHH-----
Q 005607 184 ALETFWRVYWDSGNAEAM-NLFNWHLANLEYANASLLSKLSLAFWDQD-DPYDMGGDHCFLPGG-NGRLVQALVE----- 255 (688)
Q Consensus 184 ~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~g~~~~~~gG-~~~L~~~L~~----- 255 (688)
|++. ...++... .++.++...+.......++......+... .....+....+..|+ ++.++++|.+
T Consensus 153 ~l~~------~~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~ 226 (453)
T TIGR02731 153 WLRK------QGVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFLQERHGSKMAFLDGAPPERLCQPIVDYITSR 226 (453)
T ss_pred HHHH------cCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhcCCCCeeEeecCCChHHHHHHHHHHHHhc
Confidence 7653 12233322 34444444433333322222111100000 000111112223333 3455555543
Q ss_pred cCCcccCceEEEEEecCCe-EE-EEE-CCE-----EEEecEEEEcCCCCcccCCccccCCC-CC-HHHHHHHHhcCCcce
Q 005607 256 NVPILYEKTVHTIRYGSDG-VQ-VLA-GSQ-----VFEGDMVLCTVPLGVLKSGSIKFIPE-LP-QRKLDAIKRLGYGLL 325 (688)
Q Consensus 256 ~l~I~lnt~V~~I~~~~~~-v~-V~~-~g~-----~~~ad~VI~AvP~~~l~~~~i~~~p~-Lp-~~~~~ai~~l~~~~~ 325 (688)
|.+|++|++|++|..++++ ++ |++ +++ ++.||.||+|+|++.+.+ +.|. ++ ....+.+.++++.++
T Consensus 227 g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~----lL~~~~~~~~~~~~~~~~~~~~~ 302 (453)
T TIGR02731 227 GGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKL----LLPQPWKQMPFFQKLNGLEGVPV 302 (453)
T ss_pred CCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHh----hCchhhhcCHHHHHhhcCCCCcE
Confidence 5679999999999875544 42 444 454 789999999999988764 2333 21 235566777888899
Q ss_pred eEEEEEcCCcccccCCCCceeeecCCCCCCceEEEee----ccccCCCcEEEEEecchhhHhhcCCChHHHHHHHHHHHH
Q 005607 326 NKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYS----YATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILK 401 (688)
Q Consensus 326 ~kV~l~f~~~~w~~~~~~~g~l~~~~~~~~~~~~~~~----~~~p~g~~vl~~~~~g~~a~~~~~ls~eel~~~vl~~L~ 401 (688)
.+|++.|++++|... +.+........ ....++ ...+++..++..++. . +..+..++++++++.++++|+
T Consensus 303 ~~v~l~~~~~~~~~~----~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~l~~~~~~-~-~~~~~~~~~ee~~~~v~~~L~ 375 (453)
T TIGR02731 303 INVHIWFDRKLTTVD----HLLFSRSPLLS-VYADMSETCKEYADPDKSMLELVFA-P-AADWIGRSDEEIIDATMAELA 375 (453)
T ss_pred EEEEEEEccccCCCC----ceeeeCCCcce-eecchhhhChhhcCCCCeEEEEEec-C-hhhhhcCCHHHHHHHHHHHHH
Confidence 999999999987532 22222111111 111111 112344455554443 2 356778999999999999999
Q ss_pred hhcCCCCCCCCCCceEEEecCCCCCCCCcccCCCCCCCCcccHHHHhcccCCCcEEEeecccccccCccchHHHHHHHHH
Q 005607 402 GIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRE 481 (688)
Q Consensus 402 ~i~~~~~~~i~~p~~~~~~rW~~~p~~~Gay~~~~pG~~~~~~~~l~~pi~~~~L~fAGd~ts~~~~g~~eGAi~SG~~A 481 (688)
++||.. .....+.+...++|..+||+. | ...||. ....+.+++|+ +||||||+|++.+|+|+||||+.||.+|
T Consensus 376 ~~~~~~-~~~~~~~~~~~~~~~~~p~a~--~-~~~pg~-~~~~~~~~~p~--~~l~~AG~~~a~~~~g~~egAi~SG~~A 448 (453)
T TIGR02731 376 KLFPNH-IKADSPAKILKYKVVKTPRSV--Y-KTTPGR-QQYRPHQKTPI--PNFFLAGDYTKQKYLASMEGAVLSGKLC 448 (453)
T ss_pred HhCCcc-cCCCCCceEEEEEEEECCCce--e-ccCCCC-hhhCccccCcc--CCEEEeehhccCcccccHHHHHHHHHHH
Confidence 999842 111246677788999999884 4 355774 35667788888 8999999999998999999999999999
Q ss_pred HHHHH
Q 005607 482 TAKMA 486 (688)
Q Consensus 482 A~~Il 486 (688)
|++|+
T Consensus 449 A~~v~ 453 (453)
T TIGR02731 449 AQAIV 453 (453)
T ss_pred HHHhC
Confidence 99874
No 18
>PLN02612 phytoene desaturase
Probab=100.00 E-value=4.5e-33 Score=317.07 Aligned_cols=410 Identities=20% Similarity=0.257 Sum_probs=246.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceeeeeec-CCCCCCCCceeeeccceeecCCCCcHHHHHHHHh
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKM-EGGAGNRISASADLGGSVLTGTLGNPLGILAKQL 125 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~S~~~-~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~L 125 (688)
..+|+|||||++||+||++|+++|++|+|+|+++++||++.|++. +|. .+|.|+|++.+.+.+ +..+++++
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~-------~~D~G~h~~~g~~~~-~~~ll~el 164 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGD-------WYETGLHIFFGAYPN-VQNLFGEL 164 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCC-------EEcCCceEEeCCCch-HHHHHHHh
Confidence 378999999999999999999999999999999999999999875 344 899999999988765 66799999
Q ss_pred CCceeeec-CC-ccEEec--CCcc--------cChhhhHHHHHHH--HHHHHHHHHHHH---H----h-----hccccCC
Q 005607 126 GSLLHKVR-DK-CPLYRL--DGNS--------VDPEIDMKVEADF--NRLLDKASRLRQ---L----M-----GEVAMDV 179 (688)
Q Consensus 126 Gl~~~~~~-~~-~~~~~~--~G~~--------~~~~~~~~~~~~~--~~ll~~~~~~~~---~----~-----~~~~~~~ 179 (688)
|+...... .. ..+... .+.. .+.+... ....+ ...+....+++. . . ....++.
T Consensus 165 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~-~~~~l~~~~~ls~~~kl~~~~~~~~~~~~~~~~~~~~d~~ 243 (567)
T PLN02612 165 GINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNG-IWAILRNNEMLTWPEKIKFAIGLLPAIVGGQAYVEAQDGL 243 (567)
T ss_pred CCcccceecccceEEEecCCCCceeeCcCchhcCChhhh-hHHHHhcCccCCHHHHHHHHHhhhHHhcccchhhhhcCcC
Confidence 99654221 11 111111 1111 1111100 00111 000111111111 0 0 0113456
Q ss_pred CHHHHHHHHHHHhccCCCHHH-HHHHHHHHHhhhhccccchhhhHHHhh-ccCCCCCCCCCeeecCCCh-HHHHHHHHH-
Q 005607 180 SLGSALETFWRVYWDSGNAEA-MNLFNWHLANLEYANASLLSKLSLAFW-DQDDPYDMGGDHCFLPGGN-GRLVQALVE- 255 (688)
Q Consensus 180 sl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~g~~~~~~gG~-~~L~~~L~~- 255 (688)
++.+|++.. ..++.. .+++.++...+...+...++....... ........+....++.|+. +.|+++|.+
T Consensus 244 Sv~e~l~~~------~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l~~~~gs~~~~~~G~~~~~l~~~l~~~ 317 (567)
T PLN02612 244 SVKEWMRKQ------GVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDH 317 (567)
T ss_pred cHHHHHHhc------CCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHHHhccCCceEeeecCCchHHHHHHHHHH
Confidence 777776541 122222 234444433333322222221111100 0000001122233445554 456666654
Q ss_pred ----cCCcccCceEEEEEecCCeE--EEEE-CCEEEEecEEEEcCCCCcccCCccccCCC--CCHHHHHHHHhcCCccee
Q 005607 256 ----NVPILYEKTVHTIRYGSDGV--QVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPE--LPQRKLDAIKRLGYGLLN 326 (688)
Q Consensus 256 ----~l~I~lnt~V~~I~~~~~~v--~V~~-~g~~~~ad~VI~AvP~~~l~~~~i~~~p~--Lp~~~~~ai~~l~~~~~~ 326 (688)
|.+|++|++|++|..+++++ .|.+ +|+++.||+||+|+|+..+.. +.|. .+....+.++++.+.+++
T Consensus 318 l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~----Ll~~~~~~~~~~~~l~~l~~~~v~ 393 (567)
T PLN02612 318 FQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKL----LLPDQWKEIPYFKKLDKLVGVPVI 393 (567)
T ss_pred HHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHHHHH----hCcchhcCcHHHHHHHhcCCCCeE
Confidence 56799999999999876552 3555 888999999999999988875 2232 122455667778889999
Q ss_pred EEEEEcCCcccccCCCCceeeecCCCCCCceEEEeec------cccCCCcEEEEEecchhhHhhcCCChHHHHHHHHHHH
Q 005607 327 KVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSY------ATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQIL 400 (688)
Q Consensus 327 kV~l~f~~~~w~~~~~~~g~l~~~~~~~~~~~~~~~~------~~p~g~~vl~~~~~g~~a~~~~~ls~eel~~~vl~~L 400 (688)
+|++.|++++|... . ..+....... ..+.+. ..+++..++.+.+. .+..|..++++++++.++++|
T Consensus 394 ~v~l~~dr~~~~~~-~--~~~~~~~~~~---~~~~d~S~~~~~~~~~~~~ll~~~~~--~a~~~~~~sdeei~e~vl~~L 465 (567)
T PLN02612 394 NVHIWFDRKLKNTY-D--HLLFSRSPLL---SVYADMSTTCKEYYDPNKSMLELVFA--PAEEWISRSDEDIIDATMKEL 465 (567)
T ss_pred EEEEEECcccCCCC-C--ceeecCCCCc---eeehhhhhcchhhcCCCCeEEEEEEE--cChhhhcCCHHHHHHHHHHHH
Confidence 99999999988532 1 1222211111 111111 12334445444432 467898999999999999999
Q ss_pred HhhcCCCCCCCCC--CceEEEecCCCCCCCCcccCCCCCCCCcccHHHHhcccCCCcEEEeecccccccCccchHHHHHH
Q 005607 401 KGIYEPKGINVPE--PIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSG 478 (688)
Q Consensus 401 ~~i~~~~~~~i~~--p~~~~~~rW~~~p~~~Gay~~~~pG~~~~~~~~l~~pi~~~~L~fAGd~ts~~~~g~~eGAi~SG 478 (688)
+++||... .++ ........+...|++. |. ..||.. ..++.+++|+ +||||||||+.++|+|+||||+.||
T Consensus 466 ~~lfp~~~--~~~~~~~~i~~~~~v~~P~a~--~~-~~pg~~-~~rp~~~tPi--~~l~lAGd~t~~~~~~smeGAv~SG 537 (567)
T PLN02612 466 AKLFPDEI--SADQSKAKILKYHVVKTPRSV--YK-TVPNCE-PCRPLQRSPI--EGFYLAGDYTKQKYLASMEGAVLSG 537 (567)
T ss_pred HHHCCccc--ccccCCceEEEEEEeccCCce--EE-eCCCCc-ccCccccCcc--CCEEEeecceeCCchhhHHHHHHHH
Confidence 99998531 111 1122233344445432 22 234432 2345567888 8999999999988999999999999
Q ss_pred HHHHHHHHHHHhh
Q 005607 479 LRETAKMAHCANA 491 (688)
Q Consensus 479 ~~AA~~Il~~l~~ 491 (688)
++||++|++.++.
T Consensus 538 ~~AA~~I~~~~~~ 550 (567)
T PLN02612 538 KLCAQSIVQDYEL 550 (567)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999998854
No 19
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=100.00 E-value=6.2e-33 Score=300.19 Aligned_cols=402 Identities=20% Similarity=0.222 Sum_probs=278.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCC--CcEEEEecCCCCcceeeeeecCCCCCCCCceeeeccceeecCCCCcHHHHHHHHh
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLG--FRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQL 125 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G--~~V~VLEa~~rvGGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~L 125 (688)
++|+|||||||||+|||+|++++ .+|+|||+.+++||.++|+..+|+ .+|.|+|.|... ...+-.++++|
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~-------~~e~G~~~f~~~-~~~~l~li~eL 72 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGF-------LFERGPHHFLAR-KEEILDLIKEL 72 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCE-------EEeechhheecc-hHHHHHHHHHh
Confidence 36999999999999999999999 999999999999999999998887 999999988766 35667799999
Q ss_pred CCceeeec--CCccEEecCCcccChhhhHHHHHH---H---HHHHHHHHHHH-HHhhccccCCCHHHHHHHHHHHhccCC
Q 005607 126 GSLLHKVR--DKCPLYRLDGNSVDPEIDMKVEAD---F---NRLLDKASRLR-QLMGEVAMDVSLGSALETFWRVYWDSG 196 (688)
Q Consensus 126 Gl~~~~~~--~~~~~~~~~G~~~~~~~~~~~~~~---~---~~ll~~~~~~~-~~~~~~~~~~sl~~~l~~~~~~~~~~~ 196 (688)
|++..... ....+++.+|+.++.+....+... . .........+. ........+.++++|+.. .+++.
T Consensus 73 Gled~l~~~~~~~~~i~~~gkl~p~P~~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~d~sv~~f~r~---~fG~e- 148 (444)
T COG1232 73 GLEDKLLWNSTARKYIYYDGKLHPIPTPTILGIPLLLLSSEAGLARALQEFIRPKSWEPKQDISVGEFIRR---RFGEE- 148 (444)
T ss_pred CcHHhhccCCcccceEeeCCcEEECCccceeecCCccccchhHHHHHHHhhhcccCCCCCCCcCHHHHHHH---HHhHH-
Confidence 99877652 334567788887766543211000 0 00011111111 111233678889888643 22221
Q ss_pred CHHHHHHHHHHHHhhhhccccchhhhHHHhhc-------------------cCCCC--CCCCCeeecCCChHHHHHHHHH
Q 005607 197 NAEAMNLFNWHLANLEYANASLLSKLSLAFWD-------------------QDDPY--DMGGDHCFLPGGNGRLVQALVE 255 (688)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-------------------~~~~~--~~~g~~~~~~gG~~~L~~~L~~ 255 (688)
....++.+.+..+...+.+. +|+..+. ...+. ...+....++||+++|+++|++
T Consensus 149 --v~~~~~~pll~giy~~~~~~---LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~~~l~~al~~ 223 (444)
T COG1232 149 --VVERFIEPLLEGIYAGDADK---LSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQSLIEALAE 223 (444)
T ss_pred --HHHHHHHHHhhchhcCCHHH---hhHHHhcchhhhhhhhhcchhhhhhhccCcccccccccccccCccHHHHHHHHHH
Confidence 11223444443333333222 2222110 00000 0123466789999999999999
Q ss_pred cCC--cccCceEEEEEecCCeEEEEE-CCEEEEecEEEEcCCCCcccCCccccCCCCCHHHHHHHHhcCCcceeEEEEEc
Q 005607 256 NVP--ILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLF 332 (688)
Q Consensus 256 ~l~--I~lnt~V~~I~~~~~~v~V~~-~g~~~~ad~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f 332 (688)
.++ |+++++|+.|..+..+++++. +|+++.||.||+|+|++.+.+ +.++ ....+.+.++.+.++..|.+.+
T Consensus 224 ~l~~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~----ll~~--~~~~~~~~~~~~~s~~~vv~~~ 297 (444)
T COG1232 224 KLEAKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLPELAR----LLGD--EAVSKAAKELQYTSVVTVVVGL 297 (444)
T ss_pred HhhhceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCHHHHHH----HcCC--cchhhhhhhccccceEEEEEEe
Confidence 764 889999999999977777666 889999999999999999876 4454 2345788999999999999999
Q ss_pred CCcccccCCCCceeeecCCCCCCceEE----EeeccccCCCcEEEEEecchhhHhhcCCChHHHHHHHHHHHHhhcCCCC
Q 005607 333 PYVFWETDLDTFGHLTDDSSSRGEFFL----FYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKG 408 (688)
Q Consensus 333 ~~~~w~~~~~~~g~l~~~~~~~~~~~~----~~~~~~p~g~~vl~~~~~g~~a~~~~~ls~eel~~~vl~~L~~i~~~~~ 408 (688)
+++--....+.+|.++.+....-.-+. +++...|.|..++.+++.....+....+++||+++.++++|.++++..
T Consensus 298 ~~~~~~~~~~~~g~~iad~~~~~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~~L~~~~~~~- 376 (444)
T COG1232 298 DEKDNPALPDGYGLLIADDDPYILAITFHSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAAVLDDLKKLGGIN- 376 (444)
T ss_pred ccccccCCCCceEEEEecCCCcceeEEEecccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHHHHHHHHHHHcCcC-
Confidence 876333345678888877654311112 334455667888888887766666677889999999999999999754
Q ss_pred CCCCCCceEEEecCCCCCCCCcccCCCCCCCCcccHHHHhcccCC--CcEEEeecccccccCccchHHHHHHHHHHHHHH
Q 005607 409 INVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGD--GRLFFAGEATIRRYPATMHGAFLSGLRETAKMA 486 (688)
Q Consensus 409 ~~i~~p~~~~~~rW~~~p~~~Gay~~~~pG~~~~~~~~l~~pi~~--~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il 486 (688)
.+|..+.++||.. ++....+|+.. ....++..+.. ++|+++|.|..+ . ++.+++.+|..||++|+
T Consensus 377 ---~~~~~~~v~r~~~------~~PqY~vG~~~-~~~~ir~~l~~~y~gi~~~G~~~~g--~-g~~d~I~~g~~aa~~l~ 443 (444)
T COG1232 377 ---GDPVFVEVTRWKY------AMPQYEVGHLD-RLEPIRAALKGAYPGIKSVGRYGEG--V-GLPDCIAAGKEAAEQLL 443 (444)
T ss_pred ---cchhheeeeeccc------cCCccchhHHH-HHHHHHHhhccccCCeEEeccCCCC--C-CchHHHHHHHHHHHHhh
Confidence 3556788889955 56666677652 23333333322 799999999873 2 78999999999999886
No 20
>PRK07208 hypothetical protein; Provisional
Probab=100.00 E-value=6.4e-31 Score=295.94 Aligned_cols=410 Identities=18% Similarity=0.194 Sum_probs=250.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceeeeeecCCCCCCCCceeeeccceeecCCCCcHHHHHHHHh
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQL 125 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~L 125 (688)
+++||||||||+|||+||++|+++|++|+|||+++++||+++|....|. .+|+|+|++...+ ..+..+++++
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g~-------~~d~G~h~~~~~~-~~~~~l~~~l 74 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKGN-------RFDIGGHRFFSKS-PEVMDLWNEI 74 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCCc-------eEccCCceeccCC-HHHHHHHHHh
Confidence 4589999999999999999999999999999999999999999987765 9999999998664 4567799999
Q ss_pred CCceee-ecCCccEEecCCcccChhhhH--HHH-HHHHHHHHHHHH-HHHHhhccccCCCHHHHHHHHHHHhccCCCHHH
Q 005607 126 GSLLHK-VRDKCPLYRLDGNSVDPEIDM--KVE-ADFNRLLDKASR-LRQLMGEVAMDVSLGSALETFWRVYWDSGNAEA 200 (688)
Q Consensus 126 Gl~~~~-~~~~~~~~~~~G~~~~~~~~~--~~~-~~~~~ll~~~~~-~~~~~~~~~~~~sl~~~l~~~~~~~~~~~~~~~ 200 (688)
+..... .......++.+|.....+... .+. ..+...+..... +........++.++.+|+.. .++ .+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~l~~---~~g---~~~~ 148 (479)
T PRK07208 75 LPDDDFLLRPRLSRIYYRGKFFDYPLKAFDALKNLGLWRTAKCGASYLKARLRPRKEEDSFEDWVIN---RFG---RRLY 148 (479)
T ss_pred cCCCccccccccceEEECCEEecCCcchhHHHHhCCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHH---hhC---HHHH
Confidence 862221 122333444566665443321 110 001111111111 11111112356888888753 111 1222
Q ss_pred HHHHHHHHHhhhhccccchhhh--------------HHHhhccC---------CCCCCCCCeeecCCChHHHHHHHHH--
Q 005607 201 MNLFNWHLANLEYANASLLSKL--------------SLAFWDQD---------DPYDMGGDHCFLPGGNGRLVQALVE-- 255 (688)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~l~~l--------------~~~~~~~~---------~~~~~~g~~~~~~gG~~~L~~~L~~-- 255 (688)
..++.++...+.......++.. ....+... ........+.+++||++.|+++|++
T Consensus 149 ~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~L~~~l 228 (479)
T PRK07208 149 STFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGPGQLWETAAEKL 228 (479)
T ss_pred HHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCcchHHHHHHHHH
Confidence 3333333332222211111110 00001000 0000112456778999999999976
Q ss_pred ---cCCcccCceEEEEEecCCeEE--EEE---CC--EEEEecEEEEcCCCCcccCCccccCCCCCHHHHHHHHhcCCcce
Q 005607 256 ---NVPILYEKTVHTIRYGSDGVQ--VLA---GS--QVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLL 325 (688)
Q Consensus 256 ---~l~I~lnt~V~~I~~~~~~v~--V~~---~g--~~~~ad~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~ 325 (688)
+.+|++|++|++|..+++++. ++. +| .++.||+||+|+|+..+.+ . +.|.+|+...+.++.+++.++
T Consensus 229 ~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~-~--l~~~~~~~~~~~~~~l~~~~~ 305 (479)
T PRK07208 229 EALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVA-A--LDPPPPPEVRAAAAGLRYRDF 305 (479)
T ss_pred HHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHH-h--cCCCCCHHHHHHHhCCCccee
Confidence 456999999999999887642 332 34 3689999999999998875 2 346678888888899999999
Q ss_pred eEEEEEcCCcccccCCCCceeeecCCCCCCce--EEEe-eccccCCCc-EEE-EEecchhhHhhcCCChHHHHHHHHHHH
Q 005607 326 NKVAMLFPYVFWETDLDTFGHLTDDSSSRGEF--FLFY-SYATVAGGP-LLI-ALVAGEAAHKFESMPPTDAVTKVLQIL 400 (688)
Q Consensus 326 ~kV~l~f~~~~w~~~~~~~g~l~~~~~~~~~~--~~~~-~~~~p~g~~-vl~-~~~~g~~a~~~~~ls~eel~~~vl~~L 400 (688)
.+|++.|+++.+... .+.++.+.....+.. +..+ +...|++.. .+. .+.... .....+++++++++.++++|
T Consensus 306 ~~v~l~~~~~~~~~~--~~~~~~~~~~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~-~~~~~~~~deel~~~~~~~L 382 (479)
T PRK07208 306 ITVGLLVKELNLFPD--NWIYIHDPDVKVGRLQNFNNWSPYLVPDGRDTWLGLEYFCFE-GDDLWNMSDEDLIALAIQEL 382 (479)
T ss_pred EEEEEEecCCCCCCC--ceEEecCCCCccceecccccCCcccCCCCCceEEEEEEEccC-CCccccCCHHHHHHHHHHHH
Confidence 999999988754322 122222111000111 1111 222355543 222 232222 22345789999999999999
Q ss_pred HhhcCCCCCCCCCCceEEEecCCCCCCCCcccCCCCCCCCcccHHH---HhcccCCCcEEEeecccccccCccchHHHHH
Q 005607 401 KGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDI---MAESVGDGRLFFAGEATIRRYPATMHGAFLS 477 (688)
Q Consensus 401 ~~i~~~~~~~i~~p~~~~~~rW~~~p~~~Gay~~~~pG~~~~~~~~---l~~pi~~~~L~fAGd~ts~~~~g~~eGAi~S 477 (688)
.++... .-..+....+.+|.. +|+...+|... ..+. +.++. +|||+||++....| .+||+|+.|
T Consensus 383 ~~l~~~---~~~~~~~~~v~r~~~------a~P~y~~~~~~-~~~~~~~~~~~~--~~l~laGr~~~~~~-~~~d~a~~s 449 (479)
T PRK07208 383 ARLGLI---RPADVEDGFVVRVPK------AYPVYDGTYER-NVEIIRDLLDHF--PNLHLVGRNGMHRY-NNQDHSMLT 449 (479)
T ss_pred HHcCCC---ChhheeEEEEEEecC------cccCCCchHHH-HHHHHHHHHHhc--CCceeecccccccc-CChhHHHHH
Confidence 997321 124567777888854 44444444431 1221 33555 89999999877644 599999999
Q ss_pred HHHHHHHHHHH
Q 005607 478 GLRETAKMAHC 488 (688)
Q Consensus 478 G~~AA~~Il~~ 488 (688)
|.+||++|+..
T Consensus 450 g~~~a~~i~~~ 460 (479)
T PRK07208 450 AMLAVENIIAG 460 (479)
T ss_pred HHHHHHHHhcC
Confidence 99999998875
No 21
>PLN02487 zeta-carotene desaturase
Probab=100.00 E-value=2e-30 Score=292.18 Aligned_cols=411 Identities=21% Similarity=0.263 Sum_probs=253.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceeeeeec-CCCCCCCCceeeeccceeecCCCCcHHHHHHHH
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKM-EGGAGNRISASADLGGSVLTGTLGNPLGILAKQ 124 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~S~~~-~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~ 124 (688)
++++|+|||||++||+||+.|+++|++|+|+|+++++||+++|+.. .|. .+|+|.|++.+.+.+ +..++++
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~-------~~e~G~h~~~~~~~~-~~~ll~~ 145 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGN-------HIEMGLHVFFGCYNN-LFRLMKK 145 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCc-------EEecceeEecCCcHH-HHHHHHh
Confidence 3469999999999999999999999999999999999999999964 444 899999999987654 6679999
Q ss_pred hCCceeeec-CCcc-EEecCCcc------cChhhhHHHHHHHH--HHHHHHHHHHH------------Hhh--------c
Q 005607 125 LGSLLHKVR-DKCP-LYRLDGNS------VDPEIDMKVEADFN--RLLDKASRLRQ------------LMG--------E 174 (688)
Q Consensus 125 LGl~~~~~~-~~~~-~~~~~G~~------~~~~~~~~~~~~~~--~ll~~~~~~~~------------~~~--------~ 174 (688)
+|+...... .... ++..+|.. ++.+........+. ..+....+++. ... .
T Consensus 146 LGl~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~pl~~~~~~l~~~~Ls~~dklr~~~~l~~~~~~~al~~~~~~~~~~~ 225 (569)
T PLN02487 146 VGADENLLVKDHTHTFVNKGGDVGELDFRFPVGAPLHGIKAFLTTNQLEPYDKARNALALATSPVVRALVDPDGAMRDIR 225 (569)
T ss_pred cCCcccccccccceeEEecCCEEeeeccCCCCCchhhhHHHHHcCCCCCHHHHHhhcccccccchhhhccCccccccccc
Confidence 999755332 2222 22334433 11111100000110 00111111111 000 0
Q ss_pred cccCCCHHHHHHHHHHHhccCCCH-HHHHHHHHHHHhhhhccccchhhhHHH-hhccCCCCCCCCCeeecCCChHH-HHH
Q 005607 175 VAMDVSLGSALETFWRVYWDSGNA-EAMNLFNWHLANLEYANASLLSKLSLA-FWDQDDPYDMGGDHCFLPGGNGR-LVQ 251 (688)
Q Consensus 175 ~~~~~sl~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~g~~~~~~gG~~~-L~~ 251 (688)
..++.++.+|+... ..++ ....++++.+...-....+.++...+. ...........+...+++||+.. |++
T Consensus 226 ~~d~~sv~~~l~r~------~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~~~~~~~~l~~~~Gg~~~~l~~ 299 (569)
T PLN02487 226 DLDDISFSDWFTSH------GGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVRLSG 299 (569)
T ss_pred cccCCcHHHHHHHh------CCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhcCCcceeeecCCCchHHHHH
Confidence 13456777776431 2223 334455555544433333333221111 00000001122446788999995 888
Q ss_pred HHHH-----cCCcccCceEEEEEecC--Ce---E-EEEE----CCEEEEecEEEEcCCCCcccCCccccCCCCCHH--HH
Q 005607 252 ALVE-----NVPILYEKTVHTIRYGS--DG---V-QVLA----GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQR--KL 314 (688)
Q Consensus 252 ~L~~-----~l~I~lnt~V~~I~~~~--~~---v-~V~~----~g~~~~ad~VI~AvP~~~l~~~~i~~~p~Lp~~--~~ 314 (688)
.+++ |.+|+++++|++|..++ ++ + .|+. +++++.+|.||+|+|+..+.+ +.|+.... ..
T Consensus 300 pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~----Llp~~~~~~~~~ 375 (569)
T PLN02487 300 PIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKR----LLPEQWREYEFF 375 (569)
T ss_pred HHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHH----hCCchhhccHHH
Confidence 8765 56799999999999973 22 2 2333 345789999999999998876 44554322 35
Q ss_pred HHHHhcCCcceeEEEEEcCCcccccCC--------CCce--eeecCCCCCCceEEEee--------ccccCCCcEEEEEe
Q 005607 315 DAIKRLGYGLLNKVAMLFPYVFWETDL--------DTFG--HLTDDSSSRGEFFLFYS--------YATVAGGPLLIALV 376 (688)
Q Consensus 315 ~ai~~l~~~~~~kV~l~f~~~~w~~~~--------~~~g--~l~~~~~~~~~~~~~~~--------~~~p~g~~vl~~~~ 376 (688)
..+.++.+.+++.|.+.|+++.-.... ...| .++ .. ....+..+.+ +.....+..+.+++
T Consensus 376 ~~l~~L~~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~-~~-~~~~~~f~~di~l~~~~~~~~~~~g~~l~~vi 453 (569)
T PLN02487 376 DNIYKLVGVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLL-YS-ADADFSCFADLALTSPEDYYKEGEGSLIQAVL 453 (569)
T ss_pred hHHhcCCCeeEEEEEEEecccccccccccccccccccccccccc-cc-cCCCcceEeeeecCCHHHHcccCCceEEEEEE
Confidence 678888889999999999875432210 0111 111 00 0111111111 10122235566666
Q ss_pred cchhhHhhcCCChHHHHHHHHHHHHhhcCCCCCCCCCCceEEEecCCCCCCCCcccCCCCCCCCcccHHHHhcccCCCcE
Q 005607 377 AGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRL 456 (688)
Q Consensus 377 ~g~~a~~~~~ls~eel~~~vl~~L~~i~~~~~~~i~~p~~~~~~rW~~~p~~~Gay~~~~pG~~~~~~~~l~~pi~~~~L 456 (688)
.. ++.+..++++++++.++++|.++||... . ..+....+.+..+. .| ...||+. ..+|..++|+ +||
T Consensus 454 s~--a~~~~~~~~~ei~~~~~~~L~~~~p~~~-~-~~v~~~~vv~~~~a-----t~-~~~pg~~-~~RP~~~T~~--~nl 520 (569)
T PLN02487 454 TP--GDPYMPLSNDKIVEKVHKQVLELFPSSR-G-LEVTWSSVVKIGQS-----LY-REAPGMD-PFRPDQKTPI--SNF 520 (569)
T ss_pred cC--CccccCCCHHHHHHHHHHHHHHhCcccc-c-CceEEEEEEEccCc-----ee-ccCCCcc-ccCCCCCCCC--CCE
Confidence 53 3568889999999999999999997531 1 13444445555442 22 3446653 2346677888 899
Q ss_pred EEeecccccccCccchHHHHHHHHHHHHHHHHH
Q 005607 457 FFAGEATIRRYPATMHGAFLSGLRETAKMAHCA 489 (688)
Q Consensus 457 ~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l 489 (688)
|+||||+..+|+++||||++||.+||+.|++..
T Consensus 521 ~LAGD~t~~~yPat~EgAv~SG~~AA~~i~~~~ 553 (569)
T PLN02487 521 FLAGSYTKQDYIDSMEGATLSGRQAAAYICEAG 553 (569)
T ss_pred EEeCcccccCCcchHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998876
No 22
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.98 E-value=2.1e-30 Score=289.73 Aligned_cols=402 Identities=18% Similarity=0.248 Sum_probs=239.8
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceeeeee-cCCCCCCCCceeeeccceeecCCCCcHHHHHHHHhCC
Q 005607 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKK-MEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGS 127 (688)
Q Consensus 49 dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~S~~-~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~LGl 127 (688)
+|+|||||++||+||++|++.|++|+|||+++++||+++|+. ..|+ .+|.|.|++.+.+. .+..+++++|+
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~-------~~d~G~~~~~~~~~-~~~~~~~~lg~ 72 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGN-------HIEMGLHVFFGCYA-NLFRLMKKVGA 72 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCc-------eEeeceEEecCchH-HHHHHHHHcCC
Confidence 589999999999999999999999999999999999999985 3444 89999999998764 46779999998
Q ss_pred ceeeecCC-ccEEe-cCCccc--------ChhhhHHHHHHH-HHHHHHHHHHH---HH-----hh------------ccc
Q 005607 128 LLHKVRDK-CPLYR-LDGNSV--------DPEIDMKVEADF-NRLLDKASRLR---QL-----MG------------EVA 176 (688)
Q Consensus 128 ~~~~~~~~-~~~~~-~~G~~~--------~~~~~~~~~~~~-~~ll~~~~~~~---~~-----~~------------~~~ 176 (688)
........ ...+. .++... ..+.... ...+ ...+....+++ .. .. ...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~-~~~l~~~~ls~~dklr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (474)
T TIGR02732 73 EDNLLLKEHTHTFVNKGGDIGELDFRFATGAPFNGL-KAFFTTSQLKWVDKLRNALALGTSPIVRGLVDYDGAMKTIRDL 151 (474)
T ss_pred ccccccccceeEEEcCCCcccccccCCCCCCchhhh-HHHhcCCCCCHHHHHHHHHHhhhhHHHhhccccchhhhhhhhh
Confidence 75432221 12122 223221 1111100 0000 00011111111 00 00 012
Q ss_pred cCCCHHHHHHHHHHHhccCCCHH-HHHHHHHHHHhhhhccccchhhhHH----HhhccCCCCCCCCCeeecCCChHH---
Q 005607 177 MDVSLGSALETFWRVYWDSGNAE-AMNLFNWHLANLEYANASLLSKLSL----AFWDQDDPYDMGGDHCFLPGGNGR--- 248 (688)
Q Consensus 177 ~~~sl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~----~~~~~~~~~~~~g~~~~~~gG~~~--- 248 (688)
++.++.+|++. ...++. ...++++.+...-......++.... ..+.. ...+....+++||.+.
T Consensus 152 ~~~t~~~~l~~------~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~---~~~~s~~~~~~g~~~~~l~ 222 (474)
T TIGR02732 152 DKISFAEWFLS------HGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFAA---KTEASKLRMLKGSPDKYLT 222 (474)
T ss_pred ccccHHHHHHH------cCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh---CCCcceeeeecCCcchhHH
Confidence 45667666543 123332 4455566555554444433332211 11111 1122344556666544
Q ss_pred --HHHHHHH-cCCcccCceEEEEEecC--Ce---EE-EEE-CC---EEEEecEEEEcCCCCcccCCccccCCCCC--HHH
Q 005607 249 --LVQALVE-NVPILYEKTVHTIRYGS--DG---VQ-VLA-GS---QVFEGDMVLCTVPLGVLKSGSIKFIPELP--QRK 313 (688)
Q Consensus 249 --L~~~L~~-~l~I~lnt~V~~I~~~~--~~---v~-V~~-~g---~~~~ad~VI~AvP~~~l~~~~i~~~p~Lp--~~~ 313 (688)
+++.|.+ |.+|+++++|++|..++ ++ ++ |.. +| +++.||+||+|+|++.+.+ +.|+++ ...
T Consensus 223 ~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~----Ll~~~~~~~~~ 298 (474)
T TIGR02732 223 KPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKR----LLPQEWRQFEE 298 (474)
T ss_pred HHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHh----hCChhhhcCHH
Confidence 5555554 66899999999999864 22 32 233 33 5689999999999998886 344432 125
Q ss_pred HHHHHhcCCcceeEEEEEcCCcccccCCC-------CceeeecC--CCCCCceEEEee-----c--cccCCC-cEEEEEe
Q 005607 314 LDAIKRLGYGLLNKVAMLFPYVFWETDLD-------TFGHLTDD--SSSRGEFFLFYS-----Y--ATVAGG-PLLIALV 376 (688)
Q Consensus 314 ~~ai~~l~~~~~~kV~l~f~~~~w~~~~~-------~~g~l~~~--~~~~~~~~~~~~-----~--~~p~g~-~vl~~~~ 376 (688)
...+..+.+.++..|++.|+++.-..... .... .++ ......+..+.+ . ..+.+. .++.+++
T Consensus 299 ~~~l~~l~~~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (474)
T TIGR02732 299 FDNIYKLDAVPVATVQLRYDGWVTELQDLAKRKQLKRAAG-LDNLLYTADADFSCFADLALTSPDDYYKEGQGSLLQCVL 377 (474)
T ss_pred HhhHhcCCCCCeEEEEEEeccccccccchhhhhccccccc-ccccccccCccceeeehhhccCHHHHhccCCCeEEEEEE
Confidence 56788899999999999998643221100 0000 000 000001111111 0 112232 3355555
Q ss_pred cchhhHhhcCCChHHHHHHHHHHHHhhcCCCCCCCCCCceEEEecCCCCCCCCcccCCCCCCCCcccHHHHhcccCCCcE
Q 005607 377 AGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRL 456 (688)
Q Consensus 377 ~g~~a~~~~~ls~eel~~~vl~~L~~i~~~~~~~i~~p~~~~~~rW~~~p~~~Gay~~~~pG~~~~~~~~l~~pi~~~~L 456 (688)
.. ++.+.+++++++++.++++|+++||.. .-..+....+.+..+. .....||.. ..+|...+|+ +||
T Consensus 378 ~~--~~~~~~~~~~~l~~~~~~~L~~~~p~~--~~~~~~~~~v~~~~~a------~~~~~pg~~-~~~P~~~t~~--~~l 444 (474)
T TIGR02732 378 TP--GDPWMPESNEEIAKRVDKQVRALFPSS--KNLKLTWSSVVKLAQS------LYREAPGMD-PFRPDQKTPI--SNF 444 (474)
T ss_pred eC--hhhhcCCCHHHHHHHHHHHHHHhCccc--cCCceeEEEEEEecCc------eeccCCCCc-ccCCCCCCCC--CCe
Confidence 43 346778999999999999999999842 1123444445555442 113346653 2345567777 899
Q ss_pred EEeecccccccCccchHHHHHHHHHHHHHH
Q 005607 457 FFAGEATIRRYPATMHGAFLSGLRETAKMA 486 (688)
Q Consensus 457 ~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il 486 (688)
|+||||+..+|+++||||++||.+||+.|+
T Consensus 445 ~lAGD~t~~~~pas~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 445 FLAGSYTQQDYIDSMEGATLSGRQAAAAIL 474 (474)
T ss_pred EEeccccccCchHHHhHHHHHHHHHHHHhC
Confidence 999999999999999999999999999874
No 23
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.98 E-value=4.2e-30 Score=283.88 Aligned_cols=388 Identities=20% Similarity=0.221 Sum_probs=240.6
Q ss_pred HHHHHHHHCCCcEEEEecCCCCcceeeeeecCCCCCCCCceeeeccceeecCCCCcHHHHHHHHhCCceeee-c-CCccE
Q 005607 61 AAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSLLHKV-R-DKCPL 138 (688)
Q Consensus 61 sAA~~L~k~G~~V~VLEa~~rvGGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~LGl~~~~~-~-~~~~~ 138 (688)
+||++|+++|++|+|||+++++|||++|.+.+++ +..+|.|+|++.+.+.+ +..++++||++.... . ....+
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~-----~~~~d~G~~~~~~~~~~-~~~l~~~lgl~~~~~~~~~~~~~ 74 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGL-----GQTIDNGQHVLLGAYTN-LLALLRRIGAEPRLQGPRLPLPF 74 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCCC-----CcceecCCEEEEcccHH-HHHHHHHhCCchhhhcccCCcce
Confidence 5899999999999999999999999999988754 24699999999876644 677999999875533 1 11122
Q ss_pred EecCCcc-------cChhhhH--HHH-------HHHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHhccCCCHHHHH
Q 005607 139 YRLDGNS-------VDPEIDM--KVE-------ADFNRLLDKASRLRQLMGEVAMDVSLGSALETFWRVYWDSGNAEAMN 202 (688)
Q Consensus 139 ~~~~G~~-------~~~~~~~--~~~-------~~~~~ll~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~~~~~~~~~~ 202 (688)
+.+++.. ++.+... .+. ....++......+........++.++.++++.. ...+...+
T Consensus 75 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~------~~~~~~~~ 148 (419)
T TIGR03467 75 YDPGGRLSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARALLALRRTRFRALDDTTVGDWLQAA------GQSERLIE 148 (419)
T ss_pred ecCCCCceeecCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHc------CCCHHHHH
Confidence 2223321 1111110 000 000011111111111111124567888876532 12333332
Q ss_pred -HHHHHHHhhhhccccchhhhHHHhhc--cCCCCCCCCCeeecCCChHHHHHH-HHH-----cCCcccCceEEEEEecCC
Q 005607 203 -LFNWHLANLEYANASLLSKLSLAFWD--QDDPYDMGGDHCFLPGGNGRLVQA-LVE-----NVPILYEKTVHTIRYGSD 273 (688)
Q Consensus 203 -~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~~~~g~~~~~~gG~~~L~~~-L~~-----~l~I~lnt~V~~I~~~~~ 273 (688)
++.+.+..........++........ ............+++||+++++.. |++ +.+|++|++|++|..+++
T Consensus 149 ~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~ 228 (419)
T TIGR03467 149 RLWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEANAG 228 (419)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcCC
Confidence 34444333322222222211111100 000011123467888998776543 554 567999999999999998
Q ss_pred eEEEEE--CCEEEEecEEEEcCCCCcccCCccccCCCCCHHHHHHHHhcCCcceeEEEEEcCCcccccCCCCceeeecCC
Q 005607 274 GVQVLA--GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDS 351 (688)
Q Consensus 274 ~v~V~~--~g~~~~ad~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f~~~~w~~~~~~~g~l~~~~ 351 (688)
+|+++. +|+++.||+||+|+|++++.+ +.|. +.+.+.+++++|.++.+|++.|++++|.+. ..++... .+
T Consensus 229 ~~~~~~~~~g~~~~~d~vi~a~p~~~~~~----ll~~--~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~-~~~~~~~-~~ 300 (419)
T TIGR03467 229 GIRALVLSGGETLPADAVVLAVPPRHAAS----LLPG--EDLGALLTALGYSPITTVHLRLDRAVRLPA-PMVGLVG-GL 300 (419)
T ss_pred cceEEEecCCccccCCEEEEcCCHHHHHH----hCCC--chHHHHHhhcCCcceEEEEEEeCCCcCCCC-CeeeecC-Cc
Confidence 866543 788899999999999999885 2333 245678899999999999999999998532 2333321 11
Q ss_pred CCCCceEEEeecccc-CCCcEEEEEecchhhHhhcCCChHHHHHHHHHHHHhhcCCCCCCCCCCceEEEecCCCCCCCCc
Q 005607 352 SSRGEFFLFYSYATV-AGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLG 430 (688)
Q Consensus 352 ~~~~~~~~~~~~~~p-~g~~vl~~~~~g~~a~~~~~ls~eel~~~vl~~L~~i~~~~~~~i~~p~~~~~~rW~~~p~~~G 430 (688)
..+.++...+ +...++.+++.+ +..+..++++++++.++++|.++||.. ....+....+.+|....
T Consensus 301 -----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~~l~~l~~~~~~~--~~~~~~~~~~~~~~~~~---- 367 (419)
T TIGR03467 301 -----AQWLFDRGQLAGEPGYLAVVISA--ARDLVDLPREELADRIVAELRRAFPRV--AGAKPLWARVIKEKRAT---- 367 (419)
T ss_pred -----eeEEEECCcCCCCCCEEEEEEec--chhhccCCHHHHHHHHHHHHHHhcCcc--ccCCccceEEEEccCCc----
Confidence 1122222222 222455555543 456778899999999999999999843 11245555667775422
Q ss_pred ccCCCCCCCCcccHHHHhcccCCCcEEEeecccccccCccchHHHHHHHHHHHHHH
Q 005607 431 SYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMA 486 (688)
Q Consensus 431 ay~~~~pG~~~~~~~~l~~pi~~~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il 486 (688)
|. ..||.. ..++.+.+|. ++||||||+++++++++||||+.||.+||++|+
T Consensus 368 -~~-~~~g~~-~~~~~~~~~~--~~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~ 418 (419)
T TIGR03467 368 -FA-ATPGLN-RLRPGARTPW--PNLFLAGDWTATGWPATMEGAVRSGYQAAEAVL 418 (419)
T ss_pred -cc-cCCccc-ccCCCCCCCc--CCEEEecccccCCCcchHHHHHHHHHHHHHHHh
Confidence 22 224432 3344456776 899999999998888999999999999999986
No 24
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.97 E-value=6.5e-28 Score=272.30 Aligned_cols=417 Identities=21% Similarity=0.191 Sum_probs=234.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceeeeeecCCCCCCCCceeeeccceeecCCC-CcHHHHHHHHhC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTL-GNPLGILAKQLG 126 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~-~~~l~~L~~~LG 126 (688)
.||||||||++||+||..|+++|++|+|||+++++||+++|++.+|+ .+|.|++++.+.. ...+..+++++|
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~G~-------~fD~G~~~~~~~~~~~~~~~~~~~lg 74 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGF-------TFDVGATQVAGLEPGGIHARIFRELG 74 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccCCE-------EEeecceEEEecCcCCHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999998776 9999999997642 356778899999
Q ss_pred Cceee---ecCCccEEecCC-cccChhhhHH-----HHHHH---HHHHHHHHHHHHH----hhcc--ccCCCHHHHH---
Q 005607 127 SLLHK---VRDKCPLYRLDG-NSVDPEIDMK-----VEADF---NRLLDKASRLRQL----MGEV--AMDVSLGSAL--- 185 (688)
Q Consensus 127 l~~~~---~~~~~~~~~~~G-~~~~~~~~~~-----~~~~~---~~ll~~~~~~~~~----~~~~--~~~~sl~~~l--- 185 (688)
+.... .+....++.++| ..+....+.. +...+ .+++....+.... +... ....+..++.
T Consensus 75 ~~~~~~~~~d~~~~~~~~dg~~~~~~~~d~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (492)
T TIGR02733 75 IPLPEAKILDPACAVDLPDGSEPIPLWHDPDRWQKERERQFPGSERFWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLV 154 (492)
T ss_pred CCCcccccCCCCcEEEECCCceEeeeecCHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHH
Confidence 87432 223344555666 3332211110 11111 0011111111100 0000 0000111110
Q ss_pred ---------------HHHHHHhcc---CCCHHHHHHHHHHHHhhhhccccchhhhHHHhhccCCCCCCCCCeeecCCChH
Q 005607 186 ---------------ETFWRVYWD---SGNAEAMNLFNWHLANLEYANASLLSKLSLAFWDQDDPYDMGGDHCFLPGGNG 247 (688)
Q Consensus 186 ---------------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~~~~~~gG~~ 247 (688)
..+.++... ..++..+.++.................+........ .....+.++++||++
T Consensus 155 ~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~G~~~~~GG~~ 232 (492)
T TIGR02733 155 SALRPDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQM--AQAPHGLWHLHGSMQ 232 (492)
T ss_pred HhcChhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhhc--cccCCCceeecCcHH
Confidence 112222221 234445555543321111111111111111001110 111123567999999
Q ss_pred HHHHHHHH-----cCCcccCceEEEEEecCCeEE-EEE-CC-----EEEEecEEEEcCCCCcccCCccccCCCCCHHHHH
Q 005607 248 RLVQALVE-----NVPILYEKTVHTIRYGSDGVQ-VLA-GS-----QVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLD 315 (688)
Q Consensus 248 ~L~~~L~~-----~l~I~lnt~V~~I~~~~~~v~-V~~-~g-----~~~~ad~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ 315 (688)
+|+++|++ |.+|++|++|++|..++++++ |.. ++ +++.||+||+|+|+..+.+ .+ ..+.+++...+
T Consensus 233 ~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~-ll-~~~~~~~~~~~ 310 (492)
T TIGR02733 233 TLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLE-LL-GPLGLPPGYRK 310 (492)
T ss_pred HHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHH-hc-CcccCCHHHHH
Confidence 99999987 456999999999999887532 222 43 6899999999999988875 22 23567777777
Q ss_pred HHHhcCCcc-eeEEEEEcCCcccccCC-CCceeeecCCCCCCceEEEee----ccccCCCcEEEEEecchhhHhhcCC--
Q 005607 316 AIKRLGYGL-LNKVAMLFPYVFWETDL-DTFGHLTDDSSSRGEFFLFYS----YATVAGGPLLIALVAGEAAHKFESM-- 387 (688)
Q Consensus 316 ai~~l~~~~-~~kV~l~f~~~~w~~~~-~~~g~l~~~~~~~~~~~~~~~----~~~p~g~~vl~~~~~g~~a~~~~~l-- 387 (688)
.++++++.+ .+++++.+++...+... ..+....+. .+.+++..+ ...|+|..++++.+..+. ..|..+
T Consensus 311 ~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~d~~~aP~G~~~l~~~~~~~~-~~~~~~~~ 386 (492)
T TIGR02733 311 RLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLSDH---QGSLFVSISQEGDGRAPQGEATLIASSFTDT-NDWSSLDE 386 (492)
T ss_pred HHhcCCCCCceEEEEEeecccccCCCCCcceeeccCC---CceEEEEeCCccccCCCCCceEEEEEcCCCH-HHHcCCCH
Confidence 888888876 56889999873211111 112222221 112222221 235667767655554322 222221
Q ss_pred -----ChHHHHHHHHHHHHhhcCCCCCCCCCCceEEEe----cCCCC-CCCCcccCCCC--CCCCcccHHHHhcccCCCc
Q 005607 388 -----PPTDAVTKVLQILKGIYEPKGINVPEPIQTVCT----RWGGD-PFSLGSYSNVA--VGASGDDYDIMAESVGDGR 455 (688)
Q Consensus 388 -----s~eel~~~vl~~L~~i~~~~~~~i~~p~~~~~~----rW~~~-p~~~Gay~~~~--pG~~~~~~~~l~~pi~~~~ 455 (688)
-.+++.+.+++.|++.+|.. .+-+..... .|... ....|+..... +.+....++...+|+ +|
T Consensus 387 ~~y~~~k~~~~~~il~~le~~~p~l----~~~i~~~~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~t~i--~g 460 (492)
T TIGR02733 387 EDYTAKKKQYTQTIIERLGHYFDLL----EENWVHVELATPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSRTPV--KG 460 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCc----cccEEEEEccCCchHHHHhCCCCcEECCCCcCccccCCcCCCCCCCC--CC
Confidence 13457788999999988632 121111110 11111 01122221111 222211112225677 89
Q ss_pred EEEeecccccccCccchHHHHHHHHHHHHHHH
Q 005607 456 LFFAGEATIRRYPATMHGAFLSGLRETAKMAH 487 (688)
Q Consensus 456 L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~ 487 (688)
|||||+++.++ +++.||+.||+.||++|++
T Consensus 461 Lyl~G~~~~pG--~Gv~g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 461 LWLCGDSIHPG--EGTAGVSYSALMVVRQILA 490 (492)
T ss_pred eEEecCccCCC--CcHHHHHHHHHHHHHHHhh
Confidence 99999999763 5899999999999999985
No 25
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.96 E-value=4.5e-28 Score=274.33 Aligned_cols=412 Identities=19% Similarity=0.143 Sum_probs=228.0
Q ss_pred EEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceeeeeecCCCCCCCCceeeeccceeecCCCCcHHHHHHHHhCCce
Q 005607 50 VLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSLL 129 (688)
Q Consensus 50 VvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~LGl~~ 129 (688)
|||||||++||+||.+|+++|++|+|||+++++||+++|++..|+ .+|.|++++... +.+..+++++|++.
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~G~-------~fD~G~~~~~~~--~~~~~l~~~lg~~l 71 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGF-------RFDTGPTVITMP--EALEELFALAGRDL 71 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecCCe-------EEecCCeEEccc--cHHHHHHHHcCCCh
Confidence 799999999999999999999999999999999999999998776 999999998743 56778889998532
Q ss_pred ------eeecCCccEEecCCcccChhhhHH------------HHHHHHHHHHHHHHHHH-Hhhcc--ccCCCHHHHHHH-
Q 005607 130 ------HKVRDKCPLYRLDGNSVDPEIDMK------------VEADFNRLLDKASRLRQ-LMGEV--AMDVSLGSALET- 187 (688)
Q Consensus 130 ------~~~~~~~~~~~~~G~~~~~~~~~~------------~~~~~~~ll~~~~~~~~-~~~~~--~~~~sl~~~l~~- 187 (688)
...+....+++++|..+..+.+.. ....+..+++.+..+.. ..... ..-.++.+++..
T Consensus 72 ~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (502)
T TIGR02734 72 ADYVELVPLDPFYRLCWEDGSQLDVDNDQEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYVPFLSPRDLLRAD 151 (502)
T ss_pred hheEEEEECCCceEEECCCCCEEEecCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHhHh
Confidence 222233334456665544332211 11223333333333222 10000 001111111110
Q ss_pred ------------HHHHhc-cCCCHHHHHHHHHHHHhhhhccccchhh-hHHHhhccCCCCCCCCCeeecCCChHHHHHHH
Q 005607 188 ------------FWRVYW-DSGNAEAMNLFNWHLANLEYANASLLSK-LSLAFWDQDDPYDMGGDHCFLPGGNGRLVQAL 253 (688)
Q Consensus 188 ------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~~~~g~~~~~~gG~~~L~~~L 253 (688)
+.++.. ...++..+.++........ ........ .....+. ...+..+++.||++.++++|
T Consensus 152 ~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~g-~~p~~~~~~~~l~~~~-----~~~~g~~~~~gG~~~l~~al 225 (502)
T TIGR02734 152 LPQLLALLAWRSLYSKVARFFSDERLRQAFSFHALFLG-GNPFRTPSIYALISAL-----EREWGVWFPRGGTGALVAAM 225 (502)
T ss_pred hHhhhhccCcCCHHHHHHhhcCCHHHHHHhcccceeec-cCcccchHHHHHHHHH-----HhhceEEEcCCCHHHHHHHH
Confidence 001111 1122333333321100000 11111111 1111111 11234668899999999999
Q ss_pred HH-----cCCcccCceEEEEEecCCe-EEEEE-CCEEEEecEEEEcCCCCcccCCccccCCCC-CHHHHHHHHhcCCc-c
Q 005607 254 VE-----NVPILYEKTVHTIRYGSDG-VQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPEL-PQRKLDAIKRLGYG-L 324 (688)
Q Consensus 254 ~~-----~l~I~lnt~V~~I~~~~~~-v~V~~-~g~~~~ad~VI~AvP~~~l~~~~i~~~p~L-p~~~~~ai~~l~~~-~ 324 (688)
.+ |++|+++++|++|..++++ +.|.+ +|+++.||.||+|+++..+....+ .+.. ++...+.++++.++ +
T Consensus 226 ~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~s~s 303 (502)
T TIGR02734 226 AKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLL--PNHPRRRYPAARLSRKRPSPS 303 (502)
T ss_pred HHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhc--CccccccccccccccCCcCCe
Confidence 76 5679999999999988776 45666 778899999999999866653122 2222 32334455666644 5
Q ss_pred eeEEEEEcC---CcccccCCCCceeeecCC-------------CCCCceEE-Eee----ccccCCCcEEEEEecchhh--
Q 005607 325 LNKVAMLFP---YVFWETDLDTFGHLTDDS-------------SSRGEFFL-FYS----YATVAGGPLLIALVAGEAA-- 381 (688)
Q Consensus 325 ~~kV~l~f~---~~~w~~~~~~~g~l~~~~-------------~~~~~~~~-~~~----~~~p~g~~vl~~~~~g~~a-- 381 (688)
.+++++.++ +++ ........++.++. .....+++ .++ ...|+|...+.+++..+..
T Consensus 304 ~~~~~lgl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~~~~~ 382 (502)
T TIGR02734 304 LFVLYFGLLGVDGHW-PQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVPHLGT 382 (502)
T ss_pred eeEEEEeeccccCcC-CCcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCCCCCC
Confidence 788888887 343 21111111111110 00112222 211 2356677666665543221
Q ss_pred --HhhcCCChHHHHHHHHHHHHhh-cCCCCCCCCCCceEEEecCCCCCCC--------CcccCCCC--CCCCcccHHH-H
Q 005607 382 --HKFESMPPTDAVTKVLQILKGI-YEPKGINVPEPIQTVCTRWGGDPFS--------LGSYSNVA--VGASGDDYDI-M 447 (688)
Q Consensus 382 --~~~~~ls~eel~~~vl~~L~~i-~~~~~~~i~~p~~~~~~rW~~~p~~--------~Gay~~~~--pG~~~~~~~~-l 447 (688)
..|.. ..+++.+.+++.|++. +|.. .+.++......|.+ .|+...+. ..+....++. .
T Consensus 383 ~~~~~~~-~k~~~~~~il~~l~~~~~p~l-------~~~i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~ 454 (502)
T TIGR02734 383 ADVDWSV-EGPRYRDRILAYLEERAIPGL-------RDRIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNR 454 (502)
T ss_pred CCCCcHH-HHHHHHHHHHHHHHHhcCCCh-------hHheEEEEEcCHHHHHHhcCCCCccccchhhchhhcccCCCCCC
Confidence 12322 2466888999999987 6532 22222222222211 22211111 1111112221 2
Q ss_pred hcccCCCcEEEeecccccccCccchHHHHHHHHHHHHHHHHHhh
Q 005607 448 AESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANA 491 (688)
Q Consensus 448 ~~pi~~~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l~~ 491 (688)
.+|+ +|||+||+++.++ +++.||+.||+.||+.|++..+.
T Consensus 455 ~t~i--~gLyl~G~~~~pG--~Gv~g~~~sg~~~a~~il~~~~~ 494 (502)
T TIGR02734 455 DRKI--DNLYLVGAGTHPG--AGVPGVLGSAKATAKLMLGDLAP 494 (502)
T ss_pred CCCC--CCEEEeCCCCCCC--CCHHHHHHHHHHHHHHHHhhccC
Confidence 4567 8999999999753 58999999999999999986543
No 26
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.96 E-value=1e-28 Score=241.80 Aligned_cols=321 Identities=18% Similarity=0.236 Sum_probs=220.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceeeeeecCCCCCCCCceeeeccceeecCCCCcHHHHHHHHhCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGS 127 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~LGl 127 (688)
.+|+||||||+||+||+.|+++|.+|+||||+.-+|||+.|.+..++ .+|.|+.+|..... .+..+++.+.-
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g-------~~DhGAqYfk~~~~-~F~~~Ve~~~~ 73 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGG-------RFDHGAQYFKPRDE-LFLRAVEALRD 73 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCc-------cccccceeecCCch-HHHHHHHHHHh
Confidence 57999999999999999999999999999999999999999999988 89999999975432 22222222211
Q ss_pred ceeeecCCccEEecCCcccChhhhHHHHHHHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHhccCCCHHHHHHHHHH
Q 005607 128 LLHKVRDKCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLRQLMGEVAMDVSLGSALETFWRVYWDSGNAEAMNLFNWH 207 (688)
Q Consensus 128 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~~~~~~~~~~~~~~~ 207 (688)
.-. + +.+.+.
T Consensus 74 ~gl--------------------------------------------------V------------~~W~~~-------- 83 (331)
T COG3380 74 DGL--------------------------------------------------V------------DVWTPA-------- 83 (331)
T ss_pred CCc--------------------------------------------------e------------eecccc--------
Confidence 000 0 000000
Q ss_pred HHhhhhccccchhhhHHHhhccCCCCCCCC-CeeecCCChHHHHHHHHHcCCcccCceEEEEEecCCeEEEEE-C-CEEE
Q 005607 208 LANLEYANASLLSKLSLAFWDQDDPYDMGG-DHCFLPGGNGRLVQALVENVPILYEKTVHTIRYGSDGVQVLA-G-SQVF 284 (688)
Q Consensus 208 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g-~~~~~~gG~~~L~~~L~~~l~I~lnt~V~~I~~~~~~v~V~~-~-g~~~ 284 (688)
...+...+ ....+. .-|.-.-||.+|++.|+..++|.++++|++|...++.|++.+ + ++..
T Consensus 84 --~~~~~~~~--------------~~~~~d~~pyvg~pgmsalak~LAtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~ 147 (331)
T COG3380 84 --VWTFTGDG--------------SPPRGDEDPYVGEPGMSALAKFLATDLTVVLETRVTEVARTDNDWTLHTDDGTRHT 147 (331)
T ss_pred --ccccccCC--------------CCCCCCCCccccCcchHHHHHHHhccchhhhhhhhhhheecCCeeEEEecCCCccc
Confidence 00000000 000011 114456799999999999999999999999999999999999 4 4567
Q ss_pred EecEEEEcCCCCcccCCccccCCCCCHHHHHHHHhcCCcceeEEEEEcCCcccccCCCCceeeecCCCCCCceEEEe-ec
Q 005607 285 EGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFY-SY 363 (688)
Q Consensus 285 ~ad~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f~~~~w~~~~~~~g~l~~~~~~~~~~~~~~-~~ 363 (688)
.+|.||+|+|.+.+..+.-.....+|...++.+..+.|.+...+.+.|+.+.-.+ ..|...+.. +.-+.- +.
T Consensus 148 ~~d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~s~~lg~~q~l~~P---~~G~~vdg~----~laWla~d~ 220 (331)
T COG3380 148 QFDDVVLAIPAPQTATLLTTDADDLPAALRAALADVVYAPCWSAVLGYPQPLDRP---WPGNFVDGH----PLAWLARDA 220 (331)
T ss_pred ccceEEEecCCCcchhhcCcccccchHHHHHhhccceehhHHHHHhcCCccCCCC---CCCcccCCC----eeeeeeccc
Confidence 8999999999998875321113568888999999999999999999998764221 222222211 111221 21
Q ss_pred cc---cCCCcEEEEEecchhhHhhcCCChHHHHHHHHHHHHhhcCCCCCCCCCCceEEEecCCCCCCCCcccCCCCCCCC
Q 005607 364 AT---VAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGAS 440 (688)
Q Consensus 364 ~~---p~g~~vl~~~~~g~~a~~~~~ls~eel~~~vl~~L~~i~~~~~~~i~~p~~~~~~rW~~~p~~~Gay~~~~pG~~ 440 (688)
+. .+...+++.-...+++....+.++++.+..+......++++ .+++|.....++|. |+. |...
T Consensus 221 sK~g~~p~~~~~vvqasp~wSr~h~~~~~e~~i~~l~aA~~~~~~~---~~~~p~~s~~H~Wr--------YA~--P~~~ 287 (331)
T COG3380 221 SKKGHVPDGEIWVVQASPDWSREHLDHPAEQVIVALRAAAQELDGD---RLPEPDWSDAHRWR--------YAI--PNDA 287 (331)
T ss_pred cCCCCCCcCceEEEEeCchHHHHhhcCCHHHHHHHHHHhhhhccCC---CCCcchHHHhhccc--------ccc--cccc
Confidence 21 23334667777777788888889998887777777777764 36788888888992 321 1111
Q ss_pred cccHHHHh-cccCCCcEEEeecccccccCccchHHHHHHHHHHHHHHHH
Q 005607 441 GDDYDIMA-ESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHC 488 (688)
Q Consensus 441 ~~~~~~l~-~pi~~~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~ 488 (688)
.. .+.+- .+- .+||+||||++. |-+|||+.||..+|.+|+..
T Consensus 288 ~~-~~~L~ad~~--~~l~~cGDwc~G---grVEgA~LSGlAaA~~i~~~ 330 (331)
T COG3380 288 VA-GPPLDADRE--LPLYACGDWCAG---GRVEGAVLSGLAAADHILNG 330 (331)
T ss_pred cc-CCccccCCC--CceeeecccccC---cchhHHHhccHHHHHHHHhc
Confidence 00 11121 222 789999999985 78999999999999999874
No 27
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.95 E-value=1e-25 Score=254.25 Aligned_cols=421 Identities=15% Similarity=0.161 Sum_probs=228.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceeeeeecCCCCCCCCceeeeccceeecCC----CCcHHHHHHH
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGT----LGNPLGILAK 123 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~----~~~~l~~L~~ 123 (688)
+||||||||++||+||.+|+++|++|+|||+++.+||++.+++.+|+ .+|.|++++.+. ..+.+..+++
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~-------~fd~g~~~~~~~~~~~~~~~~~~~~~ 73 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREGY-------RFDVGASMIFGFGDKGTTNLLTRALA 73 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCCE-------EEEecchhheecCCcccccHHHHHHH
Confidence 58999999999999999999999999999999999999999988776 999999997643 2345566677
Q ss_pred HhCCceeeecCC--ccEEecCCcccChhhhHH------------HHHHHHHHHHHHHHHHHHhhcc--ccCCCHHHHH--
Q 005607 124 QLGSLLHKVRDK--CPLYRLDGNSVDPEIDMK------------VEADFNRLLDKASRLRQLMGEV--AMDVSLGSAL-- 185 (688)
Q Consensus 124 ~LGl~~~~~~~~--~~~~~~~G~~~~~~~~~~------------~~~~~~~ll~~~~~~~~~~~~~--~~~~sl~~~l-- 185 (688)
.+|......... ..+..++|..+....+.+ -...+.++++........+... ..-.....+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (493)
T TIGR02730 74 AVGRKLETIPDPVQIHYHLPNGLNVKVHREYDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRV 153 (493)
T ss_pred HcCCcccccCCCccEEEECCCCeeEeeecCHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHH
Confidence 777543322222 223345554333321111 1122333333333222111110 0000000000
Q ss_pred ----------------HHHHHHhc-cCCCHHHHHHHHHHHHhhhhccccchhh-hHHHhhccCCCCCCCCCeeecCCChH
Q 005607 186 ----------------ETFWRVYW-DSGNAEAMNLFNWHLANLEYANASLLSK-LSLAFWDQDDPYDMGGDHCFLPGGNG 247 (688)
Q Consensus 186 ----------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~~~~g~~~~~~gG~~ 247 (688)
..+.++.. ...++..+.++................. .....+.. ...++.+++.||+.
T Consensus 154 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~p~~~~~~~~~~----~~~~g~~~~~gG~~ 229 (493)
T TIGR02730 154 FFKHPLACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSVVPADQTPMINAGMVFSD----RHYGGINYPKGGVG 229 (493)
T ss_pred HhhchhhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccCCCcccchhhhHHHhhcc----cccceEecCCChHH
Confidence 00111111 1233444444332221111111111100 11111110 12345678999999
Q ss_pred HHHHHHHH-----cCCcccCceEEEEEecCCeEE-EEE-CCEEEEecEEEEcCCCCcccCCccccCCCCCHHHHHHHHhc
Q 005607 248 RLVQALVE-----NVPILYEKTVHTIRYGSDGVQ-VLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRL 320 (688)
Q Consensus 248 ~L~~~L~~-----~l~I~lnt~V~~I~~~~~~v~-V~~-~g~~~~ad~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l 320 (688)
.|+++|.+ |++|+++++|++|..+++++. |.+ +|+++.||.||+|+.+..+....+. ...+++.....++++
T Consensus 230 ~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~-~~~~~~~~~~~~~~~ 308 (493)
T TIGR02730 230 QIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLK-AENLPKKEKNWQRNY 308 (493)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCC-ccccchhhHHHHhhc
Confidence 99999876 567999999999998876544 555 7888999999999876544321211 123444444455666
Q ss_pred CCc-ceeEEEEEcCCcccccCCCCceeeecC----CCCCCceEEEe-e----ccccCCCcEEEEEecchhhHhhcCC---
Q 005607 321 GYG-LLNKVAMLFPYVFWETDLDTFGHLTDD----SSSRGEFFLFY-S----YATVAGGPLLIALVAGEAAHKFESM--- 387 (688)
Q Consensus 321 ~~~-~~~kV~l~f~~~~w~~~~~~~g~l~~~----~~~~~~~~~~~-~----~~~p~g~~vl~~~~~g~~a~~~~~l--- 387 (688)
.++ +.+++++.++...-+........+.++ ....+.+++.. + ...|+|..++.+++... ...|.++
T Consensus 309 ~~s~s~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~~-~~~w~~~~~~ 387 (493)
T TIGR02730 309 VKSPSFLSLHLGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPSS-MEDWQGLSPK 387 (493)
T ss_pred cCCCceEEEEEEecCccCCCCCCccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCCC-hhhccCCCcH
Confidence 655 588999998774321111101111110 01112222221 1 22466777776666422 2223222
Q ss_pred ----ChHHHHHHHHHHHHhhcCCCCCCCCCCceEEEe----cCCCC-CCCCcccCCCCCCC-CcccH-HHHhcccCCCcE
Q 005607 388 ----PPTDAVTKVLQILKGIYEPKGINVPEPIQTVCT----RWGGD-PFSLGSYSNVAVGA-SGDDY-DIMAESVGDGRL 456 (688)
Q Consensus 388 ----s~eel~~~vl~~L~~i~~~~~~~i~~p~~~~~~----rW~~~-p~~~Gay~~~~pG~-~~~~~-~~l~~pi~~~~L 456 (688)
..+++.+.+++.|++++|.. .+-+..... .|... ....|+|....-.. ....+ +...+|+ +||
T Consensus 388 ~y~~~k~~~~~~il~~l~~~~p~l----~~~I~~~~~~TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~i--~gL 461 (493)
T TIGR02730 388 DYEAKKEADAERIIDRLEKIFPGL----DSAIDYKEVGTPRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNRTAI--PGL 461 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCh----hhcEEEEEeeCchhHHHHhCCCCcccCCcccccccccccCCCCCCCC--CCe
Confidence 14557888999999988632 111111110 11110 11234442111000 00011 1235677 899
Q ss_pred EEeecccccccCccchHHHHHHHHHHHHHHHHH
Q 005607 457 FFAGEATIRRYPATMHGAFLSGLRETAKMAHCA 489 (688)
Q Consensus 457 ~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l 489 (688)
|+||+++.++ +++.||+.||+.||++|+..+
T Consensus 462 yl~G~~~~pG--~Gv~g~~~sG~~~a~~i~~~~ 492 (493)
T TIGR02730 462 YCVGDSCFPG--QGLNAVAFSGFACAHRVAADL 492 (493)
T ss_pred EEecCcCCCC--CCHHHHHHHHHHHHHHHHhhc
Confidence 9999999753 589999999999999998754
No 28
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.95 E-value=1.2e-25 Score=233.10 Aligned_cols=416 Identities=18% Similarity=0.216 Sum_probs=262.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCc--EEEEecCCCCcceeeeeecCCCCCCCCceeeeccceeecCCCC--cHHHHHH
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFR--VTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLG--NPLGILA 122 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~--V~VLEa~~rvGGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~--~~l~~L~ 122 (688)
.++|+|||||||||+|||+|++.+.+ |+|+|+.+|+||+++|.+..+ ++.+|.|+..+.+... -.+..|+
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~n------g~ifE~GPrtlrpag~~g~~~l~lv 84 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQN------GFIFEEGPRTLRPAGPGGAETLDLV 84 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCC------ceeeccCCCccCcCCcchhHHHHHH
Confidence 48999999999999999999999876 566999999999999954443 3699999999987643 1345689
Q ss_pred HHhCCcee--eecCC-----ccEEecCCcccChhhhHH--HH---HHHHHHH-HH--HHHHHHHhhccccCCCHHHHHHH
Q 005607 123 KQLGSLLH--KVRDK-----CPLYRLDGNSVDPEIDMK--VE---ADFNRLL-DK--ASRLRQLMGEVAMDVSLGSALET 187 (688)
Q Consensus 123 ~~LGl~~~--~~~~~-----~~~~~~~G~~~~~~~~~~--~~---~~~~~ll-~~--~~~~~~~~~~~~~~~sl~~~l~~ 187 (688)
++||++.. .++.. ..+.++.|++...+.... .. ..+.+.+ .. ...++........++|+.+|.++
T Consensus 85 ~dLGl~~e~~~i~~~~paaknr~l~~~~~L~~vP~sl~~s~~~~l~p~~k~L~~a~l~e~fr~~~~~~~~dESV~sF~~R 164 (491)
T KOG1276|consen 85 SDLGLEDELQPIDISHPAAKNRFLYVPGKLPTVPSSLVGSLKFSLQPFGKPLLEAFLRELFRKKVSDPSADESVESFARR 164 (491)
T ss_pred HHcCccceeeecCCCChhhhheeeccCcccccCCcccccccccccCcccchhHHHHHhhhccccCCCCCccccHHHHHHH
Confidence 99999644 33322 234556666554442211 00 0111111 10 01122222334678888888652
Q ss_pred -HHH-------------HhccCCCHHHHHHHHHHHHhhhhccccchhhhHHHhhccCC-----------CCCCCCCeeec
Q 005607 188 -FWR-------------VYWDSGNAEAMNLFNWHLANLEYANASLLSKLSLAFWDQDD-----------PYDMGGDHCFL 242 (688)
Q Consensus 188 -~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-----------~~~~~g~~~~~ 242 (688)
|-. .+....+...+......++..|...++.+.......+.... ........+.+
T Consensus 165 rfG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~~~~sl 244 (491)
T KOG1276|consen 165 RFGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEKWTMFSL 244 (491)
T ss_pred hhhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcccccchhhh
Confidence 100 11222222233333344555565555544332222111110 00111124567
Q ss_pred CCChHHHHHHHHHcC-----CcccCceEEEEEecC-CeEEEEE---CC-EEEEecEEEEcCCCCcccCCccccCCCCCHH
Q 005607 243 PGGNGRLVQALVENV-----PILYEKTVHTIRYGS-DGVQVLA---GS-QVFEGDMVLCTVPLGVLKSGSIKFIPELPQR 312 (688)
Q Consensus 243 ~gG~~~L~~~L~~~l-----~I~lnt~V~~I~~~~-~~v~V~~---~g-~~~~ad~VI~AvP~~~l~~~~i~~~p~Lp~~ 312 (688)
+||++.|+++|.+.+ .|.++-++..+.... ++|.++. ++ ..+..+++++|+|..++.. ..+.+.+.
T Consensus 245 ~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~a~----ll~~~~~s 320 (491)
T KOG1276|consen 245 KGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVKLAK----LLRGLQNS 320 (491)
T ss_pred hhhHhHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCCceeeeccccccccchHHhhh----hccccchh
Confidence 899999999998866 367777777776654 4477665 33 3556677778999998876 56777777
Q ss_pred HHHHHHhcCCcceeEEEEEcCCcccccCCCCceeeecC--CCCCCceEEEee-ccccC--CCcEEEEEecchhhHh--hc
Q 005607 313 KLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDD--SSSRGEFFLFYS-YATVA--GGPLLIALVAGEAAHK--FE 385 (688)
Q Consensus 313 ~~~ai~~l~~~~~~kV~l~f~~~~w~~~~~~~g~l~~~--~~~~~~~~~~~~-~~~p~--g~~vl~~~~~g~~a~~--~~ 385 (688)
...++..++|.++..|++.|+.+-...+..+||.+++. .+.....-+.++ ...|+ +.+.+++++.+..... ..
T Consensus 321 ls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifdS~~Fp~~~~s~~vtvm~gg~~~~n~~~~ 400 (491)
T KOG1276|consen 321 LSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFDSMLFPDRSPSPKVTVMMGGGGSTNTSLA 400 (491)
T ss_pred hhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeEEEeecccCCCCCCCceEEEEecccccccCcCC
Confidence 78899999999999999999886555677899999983 322222323333 22222 2235666665544433 34
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCCCCCCceEEEecCCCCCCCCcccCCCCCCCCc---ccHHHHhcccCCCcEEEeecc
Q 005607 386 SMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASG---DDYDIMAESVGDGRLFFAGEA 462 (688)
Q Consensus 386 ~ls~eel~~~vl~~L~~i~~~~~~~i~~p~~~~~~rW~~~p~~~Gay~~~~pG~~~---~~~~~l~~pi~~~~L~fAGd~ 462 (688)
..|++|+++.+.++|.++++.. ..|....++-|.+ |...+..|+.. ..+..+.+.-+ .+|++||.|
T Consensus 401 ~~S~ee~~~~v~~alq~~Lgi~----~~P~~~~v~l~~~------ciPqy~vGh~~~le~a~~~l~~~~g-~~l~l~G~~ 469 (491)
T KOG1276|consen 401 VPSPEELVNAVTSALQKMLGIS----NKPVSVNVHLWKN------CIPQYTVGHDDVLEAAKSMLTDSPG-LGLFLGGNH 469 (491)
T ss_pred CCCHHHHHHHHHHHHHHHhCCC----CCcccccceehhh------cccceecchHHHHHHHHHHHHhCCC-CceEeeccc
Confidence 5689999999999999999865 2466666667765 44444555532 12233333322 589999999
Q ss_pred cccccCccchHHHHHHHHHHHHHH
Q 005607 463 TIRRYPATMHGAFLSGLRETAKMA 486 (688)
Q Consensus 463 ts~~~~g~~eGAi~SG~~AA~~Il 486 (688)
+.. -.+..+|.||+++|.+++
T Consensus 470 y~G---v~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 470 YGG---VSVGDCIESGRKTAVEVI 490 (491)
T ss_pred cCC---CChhHHHHhhHHHHHhhc
Confidence 985 368899999999998774
No 29
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.90 E-value=6.4e-23 Score=230.10 Aligned_cols=235 Identities=27% Similarity=0.289 Sum_probs=143.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceeeeeecCCCCCCCCceeeeccceeecCCCCcHHHHHHHHhC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLG 126 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~LG 126 (688)
.+||||||||++||+||.+|+++|++|+|||+++++|||++|.+..|+ .+|+|++++...... .+.++++
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf-------~fd~G~~~~~~~~~~---~~~~~l~ 72 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGF-------RFDTGPSWYLMPDPG---PLFRELG 72 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccce-------EeccCcceeecCchH---HHHHHhc
Confidence 489999999999999999999999999999999999999999999876 999999998876532 4566666
Q ss_pred -Cceee-----ecCCccEEecCCcccChhhhHH------------HHHHHHHHHHHHHHHHH-Hhhcc----cc-----C
Q 005607 127 -SLLHK-----VRDKCPLYRLDGNSVDPEIDMK------------VEADFNRLLDKASRLRQ-LMGEV----AM-----D 178 (688)
Q Consensus 127 -l~~~~-----~~~~~~~~~~~G~~~~~~~~~~------------~~~~~~~ll~~~~~~~~-~~~~~----~~-----~ 178 (688)
+.... .......+.++|..+....+.. ....+..++....+... ..... .. .
T Consensus 73 ~l~~~~l~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (487)
T COG1233 73 NLDADGLDLLPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDGEALARYLRLLARLYELLAALLLAPPRSELLLVP 152 (487)
T ss_pred cCcccceeeeccCCceeeecCCCCEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhhcCCCchhhhhhcc
Confidence 44332 2233445566666554332221 01223333332222111 11111 00 1
Q ss_pred CCHHHHHHHH-------HHHh-ccCCCHHHHHHHHHHHHhhhhccccchh-hhHHHhhccCCCCCCCCCeeecCCChHHH
Q 005607 179 VSLGSALETF-------WRVY-WDSGNAEAMNLFNWHLANLEYANASLLS-KLSLAFWDQDDPYDMGGDHCFLPGGNGRL 249 (688)
Q Consensus 179 ~sl~~~l~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~g~~~~~~gG~~~L 249 (688)
.....++... ..+. ....++..+..+........ ....... ...... .....+++.+++||++.|
T Consensus 153 ~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~~~~~~-~~p~~~~a~~~~~~-----~~~~~~G~~~p~GG~~al 226 (487)
T COG1233 153 DTPERLLRLLGFSLTSALDFFRGRFGSELLRALLAYSAVYGG-APPSTPPALYLLLS-----HLGLSGGVFYPRGGMGAL 226 (487)
T ss_pred ccHHHHHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCCchhHHHHHHH-----HhcccCCeeeeeCCHHHH
Confidence 1111221111 1111 11233344444433221111 1111111 111111 112345688999999999
Q ss_pred HHHHHH-----cCCcccCceEEEEEecCCe-EEEEE-CCEEEEecEEEEcCCCCc
Q 005607 250 VQALVE-----NVPILYEKTVHTIRYGSDG-VQVLA-GSQVFEGDMVLCTVPLGV 297 (688)
Q Consensus 250 ~~~L~~-----~l~I~lnt~V~~I~~~~~~-v~V~~-~g~~~~ad~VI~AvP~~~ 297 (688)
+++|++ |++|+++++|++|..++++ +++++ +++.+.+|.||+++-+..
T Consensus 227 ~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~~~ 281 (487)
T COG1233 227 VDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADPAL 281 (487)
T ss_pred HHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCchhh
Confidence 999987 7789999999999999875 66666 557899999999997733
No 30
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.88 E-value=7e-22 Score=213.16 Aligned_cols=417 Identities=19% Similarity=0.130 Sum_probs=219.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceeeeeecCCCCCCCCceeeeccceeecCCCCcHHHHHHHHhCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGS 127 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~LGl 127 (688)
++|+|+|||+|||+||++|+++|++|+|+|+++++||.+.|++..++ -..|+|-|+|+++|.|.+ .++++++.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg------~~~E~glh~f~~~Y~n~~-~ll~~~~~ 73 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDG------NHVEHGLHVFFGCYYNLL-TLLKELPI 73 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCC------CeeeeeeEEechhHHHHH-HHhhhCCc
Confidence 47999999999999999999999999999999999999999998654 499999999999998754 58899888
Q ss_pred ceeeecCC-ccEE-e---cCCccc-------ChhhhHHHHHHHHHHHHHHHHHHH------------HhhccccCCCHHH
Q 005607 128 LLHKVRDK-CPLY-R---LDGNSV-------DPEIDMKVEADFNRLLDKASRLRQ------------LMGEVAMDVSLGS 183 (688)
Q Consensus 128 ~~~~~~~~-~~~~-~---~~G~~~-------~~~~~~~~~~~~~~ll~~~~~~~~------------~~~~~~~~~sl~~ 183 (688)
+.+..... ...+ - ..|..- +.+........-...+....+.+- ....-.++.+..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~g~~~~~~eld~~s~~d 153 (485)
T COG3349 74 EDRLQLREHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQLPRREKIRFVLRLGDAPIGADRSLRELDKISFAD 153 (485)
T ss_pred hheeehHhhhhhhcccCCCCCcccccccCCCCCcchhhhhhhhccccCHHHHhHHhhccccccchhHHHHHHHhcccHHH
Confidence 75433211 1111 0 011000 001000000000000000000000 0001123444444
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHhhhhccccchhh-hHHHhhccCCCCC-CCCCeeecCCChH-----HHHHHHH-H
Q 005607 184 ALETFWRVYWDSGNAEAMNLFNWHLANLEYANASLLSK-LSLAFWDQDDPYD-MGGDHCFLPGGNG-----RLVQALV-E 255 (688)
Q Consensus 184 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~~-~~g~~~~~~gG~~-----~L~~~L~-~ 255 (688)
|+... .......+..+......+.+...+..+. .....+....... .......+.|+.. .+.+.+. .
T Consensus 154 ~l~~~-----g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~~g~~~E~~~~p~~~yi~~~ 228 (485)
T COG3349 154 WLKEK-----GAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGSPDEVLLQPWTEYIPER 228 (485)
T ss_pred HHHHh-----CCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhhcCCCcceeeehhhhhcccc
Confidence 44321 1122233344444433333332222111 1111110000000 0111223333332 2233333 3
Q ss_pred cCCcccCceEEEEEecCCe-----EEEEECCEEE---EecEEEEcCCCCcccCCccccCCCC-C-HHHHHHHHhcCCcce
Q 005607 256 NVPILYEKTVHTIRYGSDG-----VQVLAGSQVF---EGDMVLCTVPLGVLKSGSIKFIPEL-P-QRKLDAIKRLGYGLL 325 (688)
Q Consensus 256 ~l~I~lnt~V~~I~~~~~~-----v~V~~~g~~~---~ad~VI~AvP~~~l~~~~i~~~p~L-p-~~~~~ai~~l~~~~~ 325 (688)
+.+++...+|+.|..+... +.+...+... .++.++.+.....+++ ..|.. + ....+.+..+...++
T Consensus 229 G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~v~~~~~----~~ps~W~~~~~f~~ly~l~~~p~ 304 (485)
T COG3349 229 GRKVHADYPVKELDLDGARGLAKVTGGDVTGPEQEQQAALAVVDAFAVQRFKR----DLPSEWPKWSNFDGLYGLRLVPV 304 (485)
T ss_pred CceeeccceeeeeeccccccccceEeeeecCcceEeeehhhhhcccccchHhh----cCcccccccccccccccccccce
Confidence 6679999999999987621 2232233333 4455555555555543 22322 2 233455666778899
Q ss_pred eEEEEEcCCcccccCC--CCceee---ecCCCCCCceEEE----eeccccCCCcEEEEEecchhhHhhcCCChHHHHHHH
Q 005607 326 NKVAMLFPYVFWETDL--DTFGHL---TDDSSSRGEFFLF----YSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKV 396 (688)
Q Consensus 326 ~kV~l~f~~~~w~~~~--~~~g~l---~~~~~~~~~~~~~----~~~~~p~g~~vl~~~~~g~~a~~~~~ls~eel~~~v 396 (688)
.++.++|+...|.... ..++.. .......+.+... .++..|.....+...+. ....|...+.++++..+
T Consensus 305 ~~~~l~~~~~~~~~~~~~~~~~~dn~~~s~~~l~~~~ad~~~~~~~y~e~g~~~~le~~~~--~~~~~~~~~~~~~~a~~ 382 (485)
T COG3349 305 ITLHLRFDGWVTELTDRNQQFGIDNLLWSDDTLGGVVADLALTSPDYVEPGAGCYLEKVLA--PGWPFLFESDEAIVATF 382 (485)
T ss_pred eEEEEeecCccccccccchhhhhhccccccccCCceeeeccccchhhccccchhhhhhhhc--ccccccccchhhHHHHH
Confidence 9999999864443221 111111 1111111111000 01222221122222221 12345667888999999
Q ss_pred HHHHHhhcCCCCCCCCCCceEEEecCCCCCCCCcccCCCCCCCCcccHHHHhcccCCCcEEEeecccccccCccchHHHH
Q 005607 397 LQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFL 476 (688)
Q Consensus 397 l~~L~~i~~~~~~~i~~p~~~~~~rW~~~p~~~Gay~~~~pG~~~~~~~~l~~pi~~~~L~fAGd~ts~~~~g~~eGAi~ 476 (688)
.+.+...+|+... . .....+.+-. -+.....||.. ..++...+|+ +|+++|||++...+.++||+|..
T Consensus 383 e~~~~~~vP~~~~-a--~~~~~~i~~~------q~~~~~~pgs~-~~rP~~~Tpv--~N~~laGd~~~~~~~~smE~A~~ 450 (485)
T COG3349 383 EKELYELVPSLAE-A--KLKSSVLVNQ------QSLYGLAPGSY-HYRPEQKTPI--PNLLLAGDYTKQPYLGSMEGATL 450 (485)
T ss_pred HHHhhhcCCchhc-c--cccccceecc------ccccccCCCcc-ccCCCCCCCc--cchhhccceeecCCcCccchhhh
Confidence 9999987765321 1 1111111111 12223445554 3466667787 99999999999888899999999
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 005607 477 SGLRETAKMAHCANARAL 494 (688)
Q Consensus 477 SG~~AA~~Il~~l~~~~~ 494 (688)
||++||+.|+..+.....
T Consensus 451 sGl~AA~~v~~~~~~~~~ 468 (485)
T COG3349 451 SGLLAANAILDNLGHHAP 468 (485)
T ss_pred hHHHHHHHHHHhhhhcCc
Confidence 999999999988876554
No 31
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.87 E-value=1.9e-20 Score=189.55 Aligned_cols=271 Identities=20% Similarity=0.152 Sum_probs=173.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceeeeeecCCCCCCCCceeeeccceeecC-CCCcHHHHHHHHh
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTG-TLGNPLGILAKQL 125 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~S~~~~g~~g~~~~~~~D~G~~~~~~-~~~~~l~~L~~~L 125 (688)
+.+|+|||+|||||+|||.|++. ++|||||+.+++||++.|...+-. +.+..+|.|.+++.. .|+| +..|++++
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d---~~g~~vDtGfiVyn~~tYpn-l~~Lf~~i 82 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTD---GGGVFVDTGFIVYNERTYPN-LTRLFKTI 82 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeecccc---CCceeecceeEEecCCCcch-HHHHHHHc
Confidence 48899999999999999999876 799999999999999999865433 335789999999987 5555 66799999
Q ss_pred CCceeeecCCccEEecCCc-ccCh-------hh--hHHHHHHHHHHHHHHHHHHHHhh-----ccccCCCHHHHHHHHHH
Q 005607 126 GSLLHKVRDKCPLYRLDGN-SVDP-------EI--DMKVEADFNRLLDKASRLRQLMG-----EVAMDVSLGSALETFWR 190 (688)
Q Consensus 126 Gl~~~~~~~~~~~~~~~G~-~~~~-------~~--~~~~~~~~~~ll~~~~~~~~~~~-----~~~~~~sl~~~l~~~~~ 190 (688)
|++........++-...|. .+.- -. ..-....|..++..+-++..... ....+.++.+|+..-
T Consensus 83 Gv~t~as~Msf~v~~d~gglEy~g~tgl~~L~aqk~n~l~pRf~~mlaeiLrf~r~~~~~~d~~~~~~~tl~~~L~~~-- 160 (447)
T COG2907 83 GVDTKASFMSFSVSLDMGGLEYSGLTGLAGLLAQKRNLLRPRFPCMLAEILRFYRSDLAPSDNAGQGDTTLAQYLKQR-- 160 (447)
T ss_pred CCCCcccceeEEEEecCCceeeccCCCccchhhccccccchhHHHHHHHHHHHhhhhccchhhhcCCCccHHHHHHhc--
Confidence 9986644333222222221 1100 00 00112333444433333322111 114567888887530
Q ss_pred HhccCCCHH-HHHHHHHHHHhhhhccccchhhhHH----HhhccCC--CCCCCCCeeecCCChHHHHHHHHHcCC--ccc
Q 005607 191 VYWDSGNAE-AMNLFNWHLANLEYANASLLSKLSL----AFWDQDD--PYDMGGDHCFLPGGNGRLVQALVENVP--ILY 261 (688)
Q Consensus 191 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~----~~~~~~~--~~~~~g~~~~~~gG~~~L~~~L~~~l~--I~l 261 (688)
..... ..+.+.+..+.++.+.........+ .+..... .......|..+.||....+++|+.++. |.+
T Consensus 161 ----~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~~nhGll~l~~rp~wrtV~ggS~~yvq~laa~~~~~i~t 236 (447)
T COG2907 161 ----NFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFLVFTDNHGLLYLPKRPTWRTVAGGSRAYVQRLAADIRGRIET 236 (447)
T ss_pred ----CccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHHhccCceecCCCCceeEcccchHHHHHHHhccccceeec
Confidence 01111 1122233333333332222211111 1111111 111233477889999999999999986 999
Q ss_pred CceEEEEEecCCeEEEEE-CCEEEEecEEEEcCCCCcccCCccccCCCCCHHHHHHHHhcCCcceeEEEEEc
Q 005607 262 EKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLF 332 (688)
Q Consensus 262 nt~V~~I~~~~~~v~V~~-~g~~~~ad~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f 332 (688)
+++|.+|.+-.++|.|+. +|++.++|.||.++.+..... +.++-+++-.+.+..+.|.....|....
T Consensus 237 ~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~dqAl~----mL~e~sp~e~qll~a~~Ys~n~aVlhtd 304 (447)
T COG2907 237 RTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPDQALA----LLDEPSPEERQLLGALRYSANTAVLHTD 304 (447)
T ss_pred CCceeeeeeCCCceEEecCCCCccccceeeeecChHHHHH----hcCCCCHHHHHHHHhhhhhhceeEEeec
Confidence 999999999999998887 799999999999998876653 3455455666799999998777766554
No 32
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.74 E-value=3.3e-16 Score=163.81 Aligned_cols=240 Identities=18% Similarity=0.193 Sum_probs=137.7
Q ss_pred CCCCeeecCCChHHHHHHHHHcC-----CcccCceEEEEEecCCeEE-EEE-CCEEEEecEEEEcCCCCcccCCccccCC
Q 005607 235 MGGDHCFLPGGNGRLVQALVENV-----PILYEKTVHTIRYGSDGVQ-VLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIP 307 (688)
Q Consensus 235 ~~g~~~~~~gG~~~L~~~L~~~l-----~I~lnt~V~~I~~~~~~v~-V~~-~g~~~~ad~VI~AvP~~~l~~~~i~~~p 307 (688)
..+.|.++.||++.++.++++++ +|.+++.|.+|..+++.+. |.. +|++++++.||+++.+..+-. .+.|
T Consensus 252 ~~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~---kLlp 328 (561)
T KOG4254|consen 252 HKGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFE---KLLP 328 (561)
T ss_pred cCCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHH---HhCC
Confidence 45678899999999999998755 6999999999999987655 444 999999999999887665542 1333
Q ss_pred --CCCHHHHHHHHhcCCc-ceeE----EEEEcCCcccccCCCCceeee----c----------C-----CCCCCceEE-E
Q 005607 308 --ELPQRKLDAIKRLGYG-LLNK----VAMLFPYVFWETDLDTFGHLT----D----------D-----SSSRGEFFL-F 360 (688)
Q Consensus 308 --~Lp~~~~~ai~~l~~~-~~~k----V~l~f~~~~w~~~~~~~g~l~----~----------~-----~~~~~~~~~-~ 360 (688)
.||+.. .++.+.+. ++.| .++..+..- ..+....++.+ + + ...++..++ +
T Consensus 329 ~e~LPeef--~i~q~d~~spv~k~~~psFl~~~~~~-~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~si 405 (561)
T KOG4254|consen 329 GEALPEEF--VIQQLDTVSPVTKDKLPSFLCLPNTK-SLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSI 405 (561)
T ss_pred CccCCchh--hhhhcccccccccccCcceeecCCCC-CCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEEec
Confidence 467654 55555443 2332 334332211 11111111110 0 0 111222222 2
Q ss_pred eec----cccCCCcEEEEEecchhhHhhcCCC-------hHHHHHHHHHHHHhhcCCCCC-----CCCCCceEEEecCCC
Q 005607 361 YSY----ATVAGGPLLIALVAGEAAHKFESMP-------PTDAVTKVLQILKGIYEPKGI-----NVPEPIQTVCTRWGG 424 (688)
Q Consensus 361 ~~~----~~p~g~~vl~~~~~g~~a~~~~~ls-------~eel~~~vl~~L~~i~~~~~~-----~i~~p~~~~~~rW~~ 424 (688)
.+. -.|++++++..|+.... ..|+..+ .++..+++++.+++++|.... ++..|.+. .|.-.
T Consensus 406 PS~lDptlappg~Hvl~lf~~~t~-~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfsssv~~~dvgTP~t~--qr~l~ 482 (561)
T KOG4254|consen 406 PSSLDPTLAPPGKHVLHLFTQYTP-EEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSSSVESYDVGTPPTH--QRFLG 482 (561)
T ss_pred ccccCCCcCCCCceEEEEeccCCc-cccccCCcccchHHHHHHHHHHHHHHHHHcCCccceEEEEecCCCchh--hHHhc
Confidence 221 24678888888875432 3454433 457788999999988874321 11111110 11111
Q ss_pred CCCCCcccCCCCCCC--CcccHHHH-----hcccCCCcEEEeecccccccCccchHHHHHHHHHHHHHHHHHhh
Q 005607 425 DPFSLGSYSNVAVGA--SGDDYDIM-----AESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANA 491 (688)
Q Consensus 425 ~p~~~Gay~~~~pG~--~~~~~~~l-----~~pi~~~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l~~ 491 (688)
-..|.|-..+-+. -.-.++.. ++|+ ++||+||+.+.++ |.+-+|- |..+|...+...+.
T Consensus 483 --~~~Gn~~~~~~~ld~g~l~~Pv~~~s~y~tPI--~~LYlcGs~afPG--gGV~a~a--G~~~A~~a~~~~~~ 548 (561)
T KOG4254|consen 483 --RPGGNIFHGAMGLDQGYLHRPVMAWSNYSTPI--PGLYLCGSGAFPG--GGVMAAA--GRLAAHSAILDRKL 548 (561)
T ss_pred --CCCCcccCcccccccccccCCccccccCCCCC--CceEEecCCCCCC--CCccccc--hhHHHHHHhhhhhh
Confidence 0133332211111 00123333 7788 9999999999874 5565553 88888887776543
No 33
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.69 E-value=7.6e-16 Score=165.76 Aligned_cols=247 Identities=13% Similarity=0.134 Sum_probs=140.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceeeeeecCCCCCCCCceeeeccceeecCCCCcHHHHHHHHh-C
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQL-G 126 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~L-G 126 (688)
+||+|||||+|||++|++|++.|.+|+|||+++++||++.+....+. ...+.|+|+++..... +..++.++ .
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~g~------~~~~~G~h~f~t~~~~-v~~~~~~~~~ 74 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDETI------LFHQYGPHIFHTNNQY-VWDYISPFFE 74 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCCCc------eEEeecceeEecCcHH-HHHHHHhhcc
Confidence 79999999999999999999999999999999999999998765443 3459999999765433 33444443 2
Q ss_pred CceeeecCCccEEecCCcccChhhhHH-HHHHHHHH-HHHHH-HHHHHhhc--cccCCCHHHHHHHHHHHhccCCCHHHH
Q 005607 127 SLLHKVRDKCPLYRLDGNSVDPEIDMK-VEADFNRL-LDKAS-RLRQLMGE--VAMDVSLGSALETFWRVYWDSGNAEAM 201 (688)
Q Consensus 127 l~~~~~~~~~~~~~~~G~~~~~~~~~~-~~~~~~~l-l~~~~-~~~~~~~~--~~~~~sl~~~l~~~~~~~~~~~~~~~~ 201 (688)
.. ... .......+|+.++.|+... +...+... ...+. .+...... ......+.++.+.....++..+.....
T Consensus 75 ~~--~~~-~~~~~~~~g~~~~~P~~~~~i~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~G~~lye~ff 151 (377)
T TIGR00031 75 LN--NYQ-HRVLALYNNLDLTLPFNFNQFRKLLGVKDAQELQNFFNAQFKYGDHVPLEELQEIADPDIQLLYQFLYQKVY 151 (377)
T ss_pred cc--cee-EEEEEEECCeEEccCCCHHHHHHhcccchHHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 22 111 2235567888888777543 22222110 01111 11111110 001134445544333333322211111
Q ss_pred HHHHHHHHhhhhccccchhhhHHHhh-------ccCCCCCCCCCeeecCCChHHHHHHHHHc--CCcccCceEEEEEecC
Q 005607 202 NLFNWHLANLEYANASLLSKLSLAFW-------DQDDPYDMGGDHCFLPGGNGRLVQALVEN--VPILYEKTVHTIRYGS 272 (688)
Q Consensus 202 ~~~~~~~~~~~~~~~~~l~~l~~~~~-------~~~~~~~~~g~~~~~~gG~~~L~~~L~~~--l~I~lnt~V~~I~~~~ 272 (688)
.-+....|.. . .+.++..+. ...+.+....-...|++|++.|+++|.+. ++|++|+.+..++..+
T Consensus 152 ~~Yt~K~Wg~---~---p~el~~~~~~RvP~~~~~d~~yf~d~~q~~P~~Gyt~~~~~ml~~~~i~v~l~~~~~~~~~~~ 225 (377)
T TIGR00031 152 KPYTVKQWGL---P---AEEIDPFVIGRVPVVLSEDSSYFPDRYQGLPKGGYTKLFEKMLDHPLIDVKLNCHINLLKDKD 225 (377)
T ss_pred cccCceeeCC---C---hHHCCHHHeEecceEecCCCCcccccccccccccHHHHHHHHHhcCCCEEEeCCccceeeccc
Confidence 1111111111 1 112222111 11222222333567899999999999965 8999999888887655
Q ss_pred CeEEEEECCEEEEecEEEEcCCCCcccCCccccCCCCCHHHHHHHHhcCCcceeE
Q 005607 273 DGVQVLAGSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNK 327 (688)
Q Consensus 273 ~~v~V~~~g~~~~ad~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~~k 327 (688)
++|.+. ++.+. +.||.|.|++.+-. ....+|+|.++.-
T Consensus 226 ~~~~~~--~~~~~-~~vi~Tg~id~~f~--------------~~~g~L~yrsl~f 263 (377)
T TIGR00031 226 SQLHFA--NKAIR-KPVIYTGLIDQLFG--------------YRFGALQYRSLKF 263 (377)
T ss_pred cceeec--ccccc-CcEEEecCchHHHh--------------hccCcccceeEEE
Confidence 545443 22333 88999999887632 3456677766544
No 34
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.61 E-value=5.3e-13 Score=147.18 Aligned_cols=240 Identities=15% Similarity=0.186 Sum_probs=139.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceeeeeecCCC-------------CCCCCceeeeccceeecC
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGG-------------AGNRISASADLGGSVLTG 112 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~S~~~~g~-------------~g~~~~~~~D~G~~~~~~ 112 (688)
+.+||||||+|++|+.+|..|+++|++|+++|++++.||+.+|.+.... -|....+.+|+.++++..
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l~~ 82 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFIMA 82 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeeeec
Confidence 4599999999999999999999999999999999999999999743220 011234567777777654
Q ss_pred CCCcHHHHHHHHhCCcee-eecC-CccEEe-cCCcccChhhhH-H----------HHHHHHHHHHHHHHHHHH----hhc
Q 005607 113 TLGNPLGILAKQLGSLLH-KVRD-KCPLYR-LDGNSVDPEIDM-K----------VEADFNRLLDKASRLRQL----MGE 174 (688)
Q Consensus 113 ~~~~~l~~L~~~LGl~~~-~~~~-~~~~~~-~~G~~~~~~~~~-~----------~~~~~~~ll~~~~~~~~~----~~~ 174 (688)
. ..+..++...++... .+.. ...+.+ .+|+....|... . -+..+.+++..+..+... ...
T Consensus 83 ~--G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~~vP~s~~~~~~s~ll~l~eKr~l~kfl~~v~~~~~~~~~~~~~ 160 (443)
T PTZ00363 83 S--GELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVPATDMEALSSPLMGFFEKNRCKNFLQYVSNYDENDPETHKG 160 (443)
T ss_pred C--ChHHHHHhhcCccceeeeEEeceEEEEecCCeEEECCCCHHHHhhCCCcchhhHHHHHHHHHHHHhhccCChhhhcc
Confidence 3 345567777776533 1111 122333 566654433211 1 112222333333222110 000
Q ss_pred c-ccCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhh---hccccchhhhHH-H-hhccCCCCCCCCCeeecCCChHH
Q 005607 175 V-AMDVSLGSALETFWRVYWDSGNAEAMNLFNWHLANLE---YANASLLSKLSL-A-FWDQDDPYDMGGDHCFLPGGNGR 248 (688)
Q Consensus 175 ~-~~~~sl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~l~~-~-~~~~~~~~~~~g~~~~~~gG~~~ 248 (688)
. .+..++.++++.+ .+++..+.++...+.... +........+.. . +......+. ...+.++.+|++.
T Consensus 161 ~~~d~~T~~d~L~~~------~ls~~~~d~i~~~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~~g-~~p~~yp~gG~g~ 233 (443)
T PTZ00363 161 LNLKTMTMAQLYKKF------GLEDNTIDFVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRYG-KSPFIYPLYGLGG 233 (443)
T ss_pred cCcccCCHHHHHHHh------CCCHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhcc-CCcceeeCCCHHH
Confidence 0 1235566655432 355666665544333321 111111111111 1 111001111 1235678999999
Q ss_pred HHHHHHH-----cCCcccCceEEEEEecCCe--EEEEE-CCEEEEecEEEEcCC
Q 005607 249 LVQALVE-----NVPILYEKTVHTIRYGSDG--VQVLA-GSQVFEGDMVLCTVP 294 (688)
Q Consensus 249 L~~~L~~-----~l~I~lnt~V~~I~~~~~~--v~V~~-~g~~~~ad~VI~AvP 294 (688)
|+++|++ |.+++++++|++|..++++ +.|++ +|++++|+.||+...
T Consensus 234 L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s 287 (443)
T PTZ00363 234 LPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPS 287 (443)
T ss_pred HHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcc
Confidence 9999974 5579999999999987643 45666 889999999999554
No 35
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.53 E-value=1.4e-14 Score=117.15 Aligned_cols=67 Identities=40% Similarity=0.548 Sum_probs=57.9
Q ss_pred EECccHHHHHHHHHHHHCCCcEEEEecCCCCcceeeeeecCCCCCCCCceeeeccceeecCC-CCcHHHHHHHHh
Q 005607 52 VIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGT-LGNPLGILAKQL 125 (688)
Q Consensus 52 IVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~-~~~~l~~L~~~L 125 (688)
|||||+|||+||+.|+++|++|+|||+++++||++++...++. .+|.|++++... ....+..++++|
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~-------~~d~g~~~~~~~~~~~~~~~l~~~L 68 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGY-------RFDLGAHYFFPPDDYPNLFRLLREL 68 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTE-------EEETSS-SEEETTSCHHHHHHHHTT
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCE-------EEeeccEEEeCCCCchHHHHHHcCC
Confidence 8999999999999999999999999999999999999998765 999999999874 345677787765
No 36
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.47 E-value=1.7e-11 Score=136.73 Aligned_cols=72 Identities=29% Similarity=0.321 Sum_probs=55.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHC----CCcEEEEecCCCCcceeeeeecCCCCCCCCceeeeccceeecCCCCcHHHHHH
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRL----GFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILA 122 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~----G~~V~VLEa~~rvGGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~ 122 (688)
+.+|+|||||||||+||++|++. |.+|+|||+++++||++.++..... ++.++.|.+. ...+ ..+..++
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~-----Gy~~~~G~~~-~~~y-~~l~~ll 94 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEK-----GYVARGGREM-ENHF-ECLWDLF 94 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccC-----CEEEECCCCc-cchH-HHHHHHH
Confidence 48999999999999999999996 6799999999999999988653211 2488888664 3332 3456676
Q ss_pred HHh
Q 005607 123 KQL 125 (688)
Q Consensus 123 ~~L 125 (688)
+.+
T Consensus 95 ~~i 97 (576)
T PRK13977 95 RSI 97 (576)
T ss_pred Hhc
Confidence 665
No 37
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.45 E-value=1.6e-12 Score=136.31 Aligned_cols=56 Identities=16% Similarity=0.261 Sum_probs=48.0
Q ss_pred eeecC-CChHHHHHHHHH-----cCCcccCceEEEEEecCCeEEEEE-CCEEEEecEEEEcCC
Q 005607 239 HCFLP-GGNGRLVQALVE-----NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVP 294 (688)
Q Consensus 239 ~~~~~-gG~~~L~~~L~~-----~l~I~lnt~V~~I~~~~~~v~V~~-~g~~~~ad~VI~AvP 294 (688)
-+|+. ...+.|+++|.+ +++|+++++|.+|..++.+..+.+ +|+++.||.+|+|+.
T Consensus 102 r~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtG 164 (408)
T COG2081 102 RMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATG 164 (408)
T ss_pred eecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecC
Confidence 44555 788899988865 678999999999999998899988 777999999999986
No 38
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.25 E-value=3.1e-11 Score=122.40 Aligned_cols=233 Identities=16% Similarity=0.210 Sum_probs=124.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceeeeeecCCCCCCCCceeeeccceeecCCCCcHHHHHHHHhC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLG 126 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~LG 126 (688)
+.|++|||||++|+..|..|++.|++|+|+|+++++||.|++...+.. +-.+.-.|+|.|+..... +...+..+-
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~t----GIlvHkYGpHIFHT~~~~-Vwdyv~~F~ 75 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQT----GILVHKYGPHIFHTDNKR-VWDYVNQFT 75 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCC----CeEEeeccCceeecCchH-HHHHHhhhh
Confidence 379999999999999999999999999999999999999999877421 125678899999876544 333433321
Q ss_pred CceeeecCCccEEecCCcccChhhhHHHHHHHHHHHH---HHHHHHHHhhccccCCCHHHH---HHHHHHHhccCCCHHH
Q 005607 127 SLLHKVRDKCPLYRLDGNSVDPEIDMKVEADFNRLLD---KASRLRQLMGEVAMDVSLGSA---LETFWRVYWDSGNAEA 200 (688)
Q Consensus 127 l~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ll~---~~~~~~~~~~~~~~~~sl~~~---l~~~~~~~~~~~~~~~ 200 (688)
--. ....+.+-..+|..++.|++... +++++. .....+........+.+..+. -+...+..+..+-...
T Consensus 76 e~~--~Y~hrVla~~ng~~~~lP~nl~t---i~ql~G~~~~p~~a~~~i~~~~~~~~~~~~q~~ee~ais~vg~~LY~~f 150 (374)
T COG0562 76 EFN--PYQHRVLALVNGQLYPLPFNLNT---INQLFGKNFTPDEARKFIEEQAAEIDIAEPQNLEEQAISLVGRDLYEAF 150 (374)
T ss_pred hhh--hhccceeEEECCeeeeccccHHH---HHHHhCccCCHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHH
Confidence 100 01112345578888887776542 222221 001111111111111111110 0000001110000000
Q ss_pred HHHHHHHHHhhhhc--cccchhhhHHHhhccCCCCCCCCCeeecCCChHHHHHHHHH--cCCcccCceEEEEEecCCeEE
Q 005607 201 MNLFNWHLANLEYA--NASLLSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQALVE--NVPILYEKTVHTIRYGSDGVQ 276 (688)
Q Consensus 201 ~~~~~~~~~~~~~~--~~~~l~~l~~~~~~~~~~~~~~g~~~~~~gG~~~L~~~L~~--~l~I~lnt~V~~I~~~~~~v~ 276 (688)
..-+....|.+... .++.+..+... +...+.|....-...|++|+..+.+.|.+ .+.|++||.-..|.....+
T Consensus 151 ~kgYT~KQWG~~p~eLpasvi~RvPVr-~~~dn~YF~d~yQGlP~~GYT~~~~kMl~hp~I~V~Lntd~~~~~~~~~~-- 227 (374)
T COG0562 151 FKGYTEKQWGLDPKELPASVIKRLPVR-LNFDNRYFSDTYQGLPKDGYTAMFEKMLDHPNIDVRLNTDFFDVKDQLRA-- 227 (374)
T ss_pred hccccHHHhCCChHHCCHHHhcccceE-EcccCcccCcccccCccccHHHHHHHHhcCCCceEEecCcHHHHhhhhcc--
Confidence 00001111111111 11111111110 11122222222344688999999999998 8899999988777643221
Q ss_pred EEECCEEEEecEEEEcCCCCccc
Q 005607 277 VLAGSQVFEGDMVLCTVPLGVLK 299 (688)
Q Consensus 277 V~~~g~~~~ad~VI~AvP~~~l~ 299 (688)
+.+..||.|-|+..+-
T Consensus 228 -------~~~~~VvytG~iD~~F 243 (374)
T COG0562 228 -------IPFAPVVYTGPIDAYF 243 (374)
T ss_pred -------cCCCceEEecchHhhh
Confidence 4455889998887764
No 39
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.24 E-value=1.2e-09 Score=121.42 Aligned_cols=38 Identities=42% Similarity=0.592 Sum_probs=35.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcc
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGG 84 (688)
++||||||||+||++||+.|+++|++|+|||+.+.+|.
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~ 42 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGA 42 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCC
Confidence 59999999999999999999999999999999988775
No 40
>PRK10015 oxidoreductase; Provisional
Probab=99.18 E-value=6.7e-09 Score=115.29 Aligned_cols=37 Identities=43% Similarity=0.657 Sum_probs=35.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCc
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvG 83 (688)
++||||||||+||++||+.|++.|++|+|||+.+.+|
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g 41 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAG 41 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 5899999999999999999999999999999988775
No 41
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.16 E-value=2.7e-10 Score=124.51 Aligned_cols=53 Identities=26% Similarity=0.350 Sum_probs=36.7
Q ss_pred ChHHHHHHHHH-----cCCcccCceEEEEEecCCe-EEEEE-CCEEEEecEEEEcCCCCc
Q 005607 245 GNGRLVQALVE-----NVPILYEKTVHTIRYGSDG-VQVLA-GSQVFEGDMVLCTVPLGV 297 (688)
Q Consensus 245 G~~~L~~~L~~-----~l~I~lnt~V~~I~~~~~~-v~V~~-~g~~~~ad~VI~AvP~~~ 297 (688)
-...+++.|.+ +++|+++++|++|..++++ +.|.+ +++++.||.||+|+.-..
T Consensus 107 ~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 107 KASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKS 166 (409)
T ss_dssp -HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SS
T ss_pred cHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCC
Confidence 45666666643 7789999999999998887 88999 999999999999986443
No 42
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.16 E-value=7.8e-09 Score=114.41 Aligned_cols=36 Identities=28% Similarity=0.580 Sum_probs=33.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rv 82 (688)
.+||+|||||++||++|..|++.|++|+|||+++.+
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 489999999999999999999999999999998754
No 43
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.15 E-value=6.6e-09 Score=108.91 Aligned_cols=37 Identities=41% Similarity=0.520 Sum_probs=34.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcc
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGG 84 (688)
+||+|||||++||++|+.|++.|++|+|+|++..++.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~ 37 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY 37 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence 5899999999999999999999999999999887653
No 44
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.12 E-value=6.8e-09 Score=114.20 Aligned_cols=42 Identities=38% Similarity=0.608 Sum_probs=38.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceeee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYT 88 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~S 88 (688)
++||||||||+||++||+.|+++|++|+|||+++.+|-...+
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~ 44 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC 44 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence 499999999999999999999999999999999999965544
No 45
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.10 E-value=1.3e-08 Score=111.15 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=36.0
Q ss_pred CCcccCceEEEEEecCCeEEEEE-CCEEEEecEEEEcCCCCc
Q 005607 257 VPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGV 297 (688)
Q Consensus 257 l~I~lnt~V~~I~~~~~~v~V~~-~g~~~~ad~VI~AvP~~~ 297 (688)
++|+++++|++|..+++++.|++ +|+++.+|.||.|.....
T Consensus 122 ~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S 163 (385)
T TIGR01988 122 VTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANS 163 (385)
T ss_pred cEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCC
Confidence 67999999999999888888887 888899999999887654
No 46
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.10 E-value=4.3e-08 Score=108.41 Aligned_cols=37 Identities=35% Similarity=0.600 Sum_probs=34.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcc
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGG 84 (688)
+||||||||++|+++|++|++.|++|+|||+++.+|+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~ 38 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAM 38 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCc
Confidence 6999999999999999999999999999999887664
No 47
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.07 E-value=2.3e-08 Score=109.73 Aligned_cols=192 Identities=14% Similarity=0.148 Sum_probs=99.3
Q ss_pred CCcccCceEEEEEecCCeEEEEE--CCEEEEecEEEEcCCCCcccCCccccCCCCCHHHHHHHHhcCCc-ceeEEEEEcC
Q 005607 257 VPILYEKTVHTIRYGSDGVQVLA--GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYG-LLNKVAMLFP 333 (688)
Q Consensus 257 l~I~lnt~V~~I~~~~~~v~V~~--~g~~~~ad~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~-~~~kV~l~f~ 333 (688)
++++.+++|+.++.+++.++++. +|+++.||.||-|=..+-..+..+. .+. .....|. ....+....+
T Consensus 120 v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S~vR~~~~-~~~--------~~~~~y~~~~l~~~~~~~ 190 (387)
T COG0654 120 VTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSAVRRAAG-IAE--------FSGRDYGQTALVANVEPE 190 (387)
T ss_pred cEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCchHHHHhcC-CCC--------ccCCCCCceEEEEEeecC
Confidence 68999999999999999888766 7889999999999886655442211 011 1111122 1222222222
Q ss_pred CcccccCCCCceeeecCCCCCCceEEEeeccccCCCcEEEEEecchhhHhhcCCChHHHHHHHHHHHHhhcCCCCCCCCC
Q 005607 334 YVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPE 413 (688)
Q Consensus 334 ~~~w~~~~~~~g~l~~~~~~~~~~~~~~~~~~p~g~~vl~~~~~g~~a~~~~~ls~eel~~~vl~~L~~i~~~~~~~i~~ 413 (688)
.+. ....+.+... .+. +.+++.. +....+..+.....+.....+++++. ++.|.+.++.. .+
T Consensus 191 ~~~---~~~~~~~~~~----~~~-~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~---~~- 252 (387)
T COG0654 191 EPH---EGRAGERFTH----AGP-FALLPLP--DNRSSVVWSLPPGPAEDLQGLSDEEF----LRELQRRLGER---DP- 252 (387)
T ss_pred CCC---CCeEEEEecC----CCc-eEEEecC--CCceeEEEECChhhHHHHhcCCHHHH----HHHHHHhcCcc---cc-
Confidence 111 1111111111 111 1222221 12233444444445556666777665 55666666532 11
Q ss_pred CceEEEecCCCCCCCCcccCCCCCCCCcccHHHHhcccCCCcEEEeecccccccC---ccchHHHHHHHHHHHHHHHHHh
Q 005607 414 PIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYP---ATMHGAFLSGLRETAKMAHCAN 490 (688)
Q Consensus 414 p~~~~~~rW~~~p~~~Gay~~~~pG~~~~~~~~l~~pi~~~~L~fAGd~ts~~~~---g~~eGAi~SG~~AA~~Il~~l~ 490 (688)
........|.. .|.. .....++...+|+.++||+.+.-+| .+++-|++-+..-|..|.+...
T Consensus 253 ~~~~~~~~~~~------~~pl---------~~~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~ 317 (387)
T COG0654 253 LGRVTLVSSRS------AFPL---------SLRVAERYRRGRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPR 317 (387)
T ss_pred cceEEEccccc------cccc---------cchhhhheecCcEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhh
Confidence 11122222211 1110 1112222233789999999996444 2677777777777777777655
No 48
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.07 E-value=1.7e-07 Score=102.22 Aligned_cols=43 Identities=21% Similarity=0.373 Sum_probs=36.5
Q ss_pred HcCCcccCceEEEEEecCCeEEEEECCEEEEecEEEEcCCCCc
Q 005607 255 ENVPILYEKTVHTIRYGSDGVQVLAGSQVFEGDMVLCTVPLGV 297 (688)
Q Consensus 255 ~~l~I~lnt~V~~I~~~~~~v~V~~~g~~~~ad~VI~AvP~~~ 297 (688)
.+++|+++++|++|..+++++.|.+++.++.+|.||+|+....
T Consensus 162 ~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 162 AGAELLFNEPVTAIEADGDGVTVTTADGTYEAKKLVVSAGAWV 204 (376)
T ss_pred CCCEEECCCEEEEEEeeCCeEEEEeCCCEEEeeEEEEecCcch
Confidence 4788999999999999888888888444899999999998653
No 49
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.06 E-value=3.7e-09 Score=113.74 Aligned_cols=59 Identities=27% Similarity=0.271 Sum_probs=43.8
Q ss_pred eeecCCC---hHHHHHHHHH-----cCCcccCceEEEEEecCCeEE-EEECCEEEEecEEEEcCCCCc
Q 005607 239 HCFLPGG---NGRLVQALVE-----NVPILYEKTVHTIRYGSDGVQ-VLAGSQVFEGDMVLCTVPLGV 297 (688)
Q Consensus 239 ~~~~~gG---~~~L~~~L~~-----~l~I~lnt~V~~I~~~~~~v~-V~~~g~~~~ad~VI~AvP~~~ 297 (688)
.+.+.+| ...+++.|.+ |++|+.+++|++|..++++|+ |.++.+.++||+||+|+.+..
T Consensus 136 ~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 136 VFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGEIRADRVVLAAGAWS 203 (358)
T ss_dssp EEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEEEEECEEEE--GGGH
T ss_pred hcccccccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccccccceeEecccccc
Confidence 4455566 5666666654 678999999999999999998 888444599999999997654
No 50
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.04 E-value=3.6e-08 Score=108.35 Aligned_cols=42 Identities=12% Similarity=0.169 Sum_probs=37.0
Q ss_pred cCCcccCceEEEEEecCCeEEEEE-CCEEEEecEEEEcCCCCc
Q 005607 256 NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGV 297 (688)
Q Consensus 256 ~l~I~lnt~V~~I~~~~~~v~V~~-~g~~~~ad~VI~AvP~~~ 297 (688)
+++|+++++|++|+.++++++|++ +|+++.+|.||.|.....
T Consensus 127 gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 127 GVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAS 169 (392)
T ss_pred CCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCc
Confidence 678999999999999888888887 788899999999997654
No 51
>PRK09126 hypothetical protein; Provisional
Probab=99.02 E-value=3.3e-08 Score=108.53 Aligned_cols=44 Identities=16% Similarity=0.230 Sum_probs=37.9
Q ss_pred cCCcccCceEEEEEecCCeEEEEE-CCEEEEecEEEEcCCCCccc
Q 005607 256 NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLK 299 (688)
Q Consensus 256 ~l~I~lnt~V~~I~~~~~~v~V~~-~g~~~~ad~VI~AvP~~~l~ 299 (688)
+++|+++++|++++.+++++.|++ +|++++||.||.|.......
T Consensus 125 g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~v 169 (392)
T PRK09126 125 GIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSAT 169 (392)
T ss_pred CcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCchh
Confidence 678999999999998888888877 78899999999999875443
No 52
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.99 E-value=3e-08 Score=108.74 Aligned_cols=36 Identities=39% Similarity=0.472 Sum_probs=33.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rv 82 (688)
.+||+|||||++||++|+.|++.|++|+|+|+.+.+
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~ 42 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY 42 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 489999999999999999999999999999998754
No 53
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.99 E-value=3.7e-08 Score=108.17 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=41.0
Q ss_pred HHHHHHHH--cCCcccCceEEEEEecCCeEEEEE-CCEEEEecEEEEcCCCCccc
Q 005607 248 RLVQALVE--NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLK 299 (688)
Q Consensus 248 ~L~~~L~~--~l~I~lnt~V~~I~~~~~~v~V~~-~g~~~~ad~VI~AvP~~~l~ 299 (688)
.|.+.+.+ +++|+.+++|+++..+++++.|+. ++++++||.||.|.......
T Consensus 117 ~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~v 171 (391)
T PRK08020 117 ALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQV 171 (391)
T ss_pred HHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCchh
Confidence 44444432 678999999999998888888877 77899999999999876543
No 54
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.98 E-value=5.3e-08 Score=106.49 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=41.3
Q ss_pred HHHHHHHHH--cCCcccCceEEEEEecCCeEEEEE-CCEEEEecEEEEcCCCCc
Q 005607 247 GRLVQALVE--NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGV 297 (688)
Q Consensus 247 ~~L~~~L~~--~l~I~lnt~V~~I~~~~~~v~V~~-~g~~~~ad~VI~AvP~~~ 297 (688)
+.|.+.+.+ +++++++++|++|..++++++|++ +|+++.||.||.|.+...
T Consensus 109 ~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 109 QALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANS 162 (382)
T ss_pred HHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCCh
Confidence 344444444 678999999999999888888887 778899999999998764
No 55
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.98 E-value=1.3e-08 Score=114.30 Aligned_cols=38 Identities=29% Similarity=0.473 Sum_probs=33.8
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHC--CCcEEEEecCCCCc
Q 005607 45 SNKLRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAG 83 (688)
Q Consensus 45 ~~~~dVvIVGAGiaGLsAA~~L~k~--G~~V~VLEa~~rvG 83 (688)
+.++||+|||||++||++|++|+++ |.+|+|||++. +|
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~-~g 61 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL-CG 61 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc-cc
Confidence 4458999999999999999999998 99999999954 54
No 56
>PRK08013 oxidoreductase; Provisional
Probab=98.97 E-value=6.8e-08 Score=106.49 Aligned_cols=53 Identities=9% Similarity=0.174 Sum_probs=42.2
Q ss_pred HHHHHHHH--cCCcccCceEEEEEecCCeEEEEE-CCEEEEecEEEEcCCCCcccC
Q 005607 248 RLVQALVE--NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKS 300 (688)
Q Consensus 248 ~L~~~L~~--~l~I~lnt~V~~I~~~~~~v~V~~-~g~~~~ad~VI~AvP~~~l~~ 300 (688)
.|.+.+.+ +++|+++++|++|+.++++++|+. +|++++||.||-|-..+-..+
T Consensus 116 ~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~vR 171 (400)
T PRK08013 116 ALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANSWLR 171 (400)
T ss_pred HHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCcHHH
Confidence 34444443 578999999999999888888887 888999999999988765543
No 57
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.97 E-value=7.6e-08 Score=106.24 Aligned_cols=53 Identities=11% Similarity=0.192 Sum_probs=41.6
Q ss_pred HHHHHHHH-cCCcccCceEEEEEecCCeEEEEE-CCEEEEecEEEEcCCCCcccC
Q 005607 248 RLVQALVE-NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKS 300 (688)
Q Consensus 248 ~L~~~L~~-~l~I~lnt~V~~I~~~~~~v~V~~-~g~~~~ad~VI~AvP~~~l~~ 300 (688)
.|.+.+.+ +++|+.+++|++|+.++++|+|++ +|++++||.||.|...+...+
T Consensus 117 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~vR 171 (405)
T PRK05714 117 ALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSAVR 171 (405)
T ss_pred HHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCchhH
Confidence 33444432 677999999999999988888887 788899999999998765443
No 58
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.97 E-value=2.1e-09 Score=118.16 Aligned_cols=41 Identities=32% Similarity=0.490 Sum_probs=37.1
Q ss_pred CcEEEECccHHHHHHHHHHHHC--CCcEEEEecCCCCcceeee
Q 005607 48 LRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAGGRVYT 88 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~--G~~V~VLEa~~rvGGr~~S 88 (688)
+||+|||||++|+++|++|++. |++|+|||+...+|+.+..
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~ 45 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTG 45 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccccc
Confidence 8999999999999999999999 9999999998888765443
No 59
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.95 E-value=7.9e-09 Score=112.21 Aligned_cols=42 Identities=26% Similarity=0.428 Sum_probs=38.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCC--CcEEEEecCCCCcceeee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLG--FRVTVLEGRKRAGGRVYT 88 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G--~~V~VLEa~~rvGGr~~S 88 (688)
++||+||||||.|+++|++|++.+ ++|+|+|+.+.+|--..+
T Consensus 3 ~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~ 46 (429)
T COG0579 3 DYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSS 46 (429)
T ss_pred ceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcccccccc
Confidence 489999999999999999999998 999999999999866555
No 60
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.94 E-value=4e-08 Score=108.27 Aligned_cols=42 Identities=14% Similarity=0.222 Sum_probs=37.1
Q ss_pred cCCcccCceEEEEEecCCeEEEEE-CCEEEEecEEEEcCCCCc
Q 005607 256 NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGV 297 (688)
Q Consensus 256 ~l~I~lnt~V~~I~~~~~~v~V~~-~g~~~~ad~VI~AvP~~~ 297 (688)
+++|+++++|++|+.+++++.|+. +|.++.+|.||.|.....
T Consensus 125 gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S 167 (403)
T PRK07333 125 GIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARS 167 (403)
T ss_pred CCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCCh
Confidence 678999999999999988888887 788899999999987653
No 61
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.94 E-value=1.4e-08 Score=110.86 Aligned_cols=41 Identities=12% Similarity=0.012 Sum_probs=35.2
Q ss_pred cCCcccCceEEEEEecCCeEEEEECCEEEEecEEEEcCCCC
Q 005607 256 NVPILYEKTVHTIRYGSDGVQVLAGSQVFEGDMVLCTVPLG 296 (688)
Q Consensus 256 ~l~I~lnt~V~~I~~~~~~v~V~~~g~~~~ad~VI~AvP~~ 296 (688)
+++++.+++|++|..+++++.|++++.++.+|.||+|+...
T Consensus 159 g~~~~~~~~V~~i~~~~~~~~v~~~~~~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 159 GATVRDGTKVVEIEPTELLVTVKTTKGSYQANKLVVTAGAW 199 (380)
T ss_pred CCEEECCCeEEEEEecCCeEEEEeCCCEEEeCEEEEecCcc
Confidence 77899999999999988888887755589999999999764
No 62
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.92 E-value=1.4e-09 Score=105.05 Aligned_cols=69 Identities=25% Similarity=0.475 Sum_probs=56.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceeeeeecCCCCCCCCceeeeccceeecCC-CCcHHHHHHHHhC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGT-LGNPLGILAKQLG 126 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~-~~~~l~~L~~~LG 126 (688)
.||+|||||.|||+|||+|+++|.+|+|||++..+||-++ .|++.|+.. -..+...+++++|
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w-----------------~GGmlf~~iVv~~~a~~iL~e~g 93 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW-----------------GGGMLFNKIVVREEADEILDEFG 93 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc-----------------ccccccceeeecchHHHHHHHhC
Confidence 7999999999999999999999999999999999998553 234444422 2456778999999
Q ss_pred Cceeeec
Q 005607 127 SLLHKVR 133 (688)
Q Consensus 127 l~~~~~~ 133 (688)
++.....
T Consensus 94 I~ye~~e 100 (262)
T COG1635 94 IRYEEEE 100 (262)
T ss_pred CcceecC
Confidence 9876544
No 63
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.91 E-value=2e-07 Score=102.24 Aligned_cols=37 Identities=38% Similarity=0.600 Sum_probs=34.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCc
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvG 83 (688)
++||+|||||++||++|+.|++.|++|+|+|++..+.
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 41 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPR 41 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCcc
Confidence 3899999999999999999999999999999987653
No 64
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.90 E-value=7.9e-08 Score=106.13 Aligned_cols=51 Identities=16% Similarity=0.233 Sum_probs=41.1
Q ss_pred HHHHHHHH--cCCcccCceEEEEEecCCeEEEEE-CCEEEEecEEEEcCCCCcc
Q 005607 248 RLVQALVE--NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVL 298 (688)
Q Consensus 248 ~L~~~L~~--~l~I~lnt~V~~I~~~~~~v~V~~-~g~~~~ad~VI~AvP~~~l 298 (688)
.|.+.+.+ +++|+++++|++|..+++.+.|+. +|++++||.||.|-..+..
T Consensus 116 ~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S~ 169 (405)
T PRK08850 116 ALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANSW 169 (405)
T ss_pred HHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCCh
Confidence 34444443 578999999999999888888887 8889999999999987544
No 65
>PRK06184 hypothetical protein; Provisional
Probab=98.89 E-value=1.2e-07 Score=107.56 Aligned_cols=36 Identities=33% Similarity=0.524 Sum_probs=33.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rv 82 (688)
++||+|||||++||++|..|++.|++|+|||+++.+
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~ 38 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP 38 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 489999999999999999999999999999998754
No 66
>PRK07190 hypothetical protein; Provisional
Probab=98.89 E-value=2.2e-07 Score=104.73 Aligned_cols=45 Identities=9% Similarity=0.084 Sum_probs=38.8
Q ss_pred cCCcccCceEEEEEecCCeEEEEE-CCEEEEecEEEEcCCCCcccC
Q 005607 256 NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKS 300 (688)
Q Consensus 256 ~l~I~lnt~V~~I~~~~~~v~V~~-~g~~~~ad~VI~AvP~~~l~~ 300 (688)
+++|+++++|++|+.+++++.++. +|++++|+.||.|.......+
T Consensus 123 Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S~vR 168 (487)
T PRK07190 123 GAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRSFVR 168 (487)
T ss_pred CCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCHHHH
Confidence 678999999999999998888776 778999999999998765443
No 67
>PRK06834 hypothetical protein; Provisional
Probab=98.88 E-value=4e-07 Score=102.79 Aligned_cols=44 Identities=18% Similarity=0.192 Sum_probs=37.9
Q ss_pred cCCcccCceEEEEEecCCeEEEEE-CCEEEEecEEEEcCCCCccc
Q 005607 256 NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLK 299 (688)
Q Consensus 256 ~l~I~lnt~V~~I~~~~~~v~V~~-~g~~~~ad~VI~AvP~~~l~ 299 (688)
+++|+++++|++|+.++++|.|+. +|+++++|.||.|.......
T Consensus 114 gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 114 GVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLV 158 (488)
T ss_pred CCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCc
Confidence 678999999999999999998887 77789999999998765443
No 68
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.87 E-value=5.6e-07 Score=103.36 Aligned_cols=36 Identities=36% Similarity=0.533 Sum_probs=33.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rv 82 (688)
++||+|||||++||++|+.|++.|++|+|+|+++.+
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~ 58 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL 58 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 489999999999999999999999999999998754
No 69
>PRK05868 hypothetical protein; Validated
Probab=98.86 E-value=6.2e-07 Score=97.83 Aligned_cols=47 Identities=21% Similarity=0.227 Sum_probs=39.9
Q ss_pred HHcCCcccCceEEEEEecCCeEEEEE-CCEEEEecEEEEcCCCCcccC
Q 005607 254 VENVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKS 300 (688)
Q Consensus 254 ~~~l~I~lnt~V~~I~~~~~~v~V~~-~g~~~~ad~VI~AvP~~~l~~ 300 (688)
..+++|+++++|++|+.++++|+|+. +|++++||.||-|-..+...+
T Consensus 116 ~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~vR 163 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSNVR 163 (372)
T ss_pred cCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCchHH
Confidence 34678999999999998888899888 888999999999988765554
No 70
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.85 E-value=3.1e-07 Score=100.93 Aligned_cols=50 Identities=16% Similarity=0.215 Sum_probs=40.0
Q ss_pred HHHHHHHH--cCCcccCceEEEEEecCCeEEEEE-CCEEEEecEEEEcCCCCc
Q 005607 248 RLVQALVE--NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGV 297 (688)
Q Consensus 248 ~L~~~L~~--~l~I~lnt~V~~I~~~~~~v~V~~-~g~~~~ad~VI~AvP~~~ 297 (688)
.|.+.+.+ +++|+++++|++|..+++++.|++ ++.++.+|.||.|.....
T Consensus 117 ~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 117 RLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHS 169 (395)
T ss_pred HHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCh
Confidence 44444433 578999999999998888888887 777899999999998653
No 71
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.85 E-value=2.7e-07 Score=101.12 Aligned_cols=45 Identities=11% Similarity=0.226 Sum_probs=39.0
Q ss_pred cCCcccCceEEEEEecCCeEEEEE-CCEEEEecEEEEcCCCCcccC
Q 005607 256 NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKS 300 (688)
Q Consensus 256 ~l~I~lnt~V~~I~~~~~~v~V~~-~g~~~~ad~VI~AvP~~~l~~ 300 (688)
+++|+.+++|++++.++++++|+. +|.++++|.||.|...+...+
T Consensus 125 ~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~vR 170 (384)
T PRK08849 125 NLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQVR 170 (384)
T ss_pred CeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCchhH
Confidence 577999999999999999888888 888999999999998765543
No 72
>PRK08244 hypothetical protein; Provisional
Probab=98.84 E-value=4.2e-07 Score=103.03 Aligned_cols=34 Identities=35% Similarity=0.558 Sum_probs=32.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~r 81 (688)
+||+|||||++||++|..|++.|++|+|+|+++.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 8999999999999999999999999999999764
No 73
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.83 E-value=4.2e-08 Score=109.52 Aligned_cols=41 Identities=51% Similarity=0.665 Sum_probs=38.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~ 87 (688)
.++|+|||||+|||+||++|.+.|++|+|||+++.+||...
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~ 50 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWV 50 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceee
Confidence 48999999999999999999999999999999999999764
No 74
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.83 E-value=2.8e-08 Score=98.45 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=31.1
Q ss_pred cCCcccCceEEEEEecCCeEEEEE-CCEEEEecEEEEcCCCC
Q 005607 256 NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLG 296 (688)
Q Consensus 256 ~l~I~lnt~V~~I~~~~~~v~V~~-~g~~~~ad~VI~AvP~~ 296 (688)
+++|+++++|++|.+++++|+|++ ++++++||+||+|+...
T Consensus 96 ~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~ 137 (203)
T PF13738_consen 96 GLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHY 137 (203)
T ss_dssp TGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SS
T ss_pred CcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeecc
Confidence 456999999999999999999999 67799999999999853
No 75
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.82 E-value=7.1e-07 Score=98.12 Aligned_cols=35 Identities=43% Similarity=0.587 Sum_probs=33.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~r 81 (688)
++||+|||||++||++|..|++.|++|+|+|+++.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 38999999999999999999999999999999874
No 76
>PRK07045 putative monooxygenase; Reviewed
Probab=98.82 E-value=8.2e-07 Score=97.44 Aligned_cols=36 Identities=42% Similarity=0.558 Sum_probs=33.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rv 82 (688)
++||+|||||++||+||..|+++|++|+|+|+.+.+
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 489999999999999999999999999999998754
No 77
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.81 E-value=2.2e-08 Score=110.79 Aligned_cols=39 Identities=31% Similarity=0.551 Sum_probs=34.9
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCccee
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~ 86 (688)
+||+|||||++||++|++|++.|++|+|||+...+|..+
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~~~~a 39 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGPALET 39 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCchhhhh
Confidence 489999999999999999999999999999976666544
No 78
>PRK06185 hypothetical protein; Provisional
Probab=98.80 E-value=4.5e-07 Score=100.10 Aligned_cols=36 Identities=33% Similarity=0.473 Sum_probs=33.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~r 81 (688)
.++||+|||||++||++|+.|++.|++|+|+|+++.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 348999999999999999999999999999999753
No 79
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.79 E-value=5e-06 Score=90.78 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=38.0
Q ss_pred HHHHHHHcCCcccCceEEEEEecCCeEEEEE-CCEEEEecEEEEcCCCC
Q 005607 249 LVQALVENVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLG 296 (688)
Q Consensus 249 L~~~L~~~l~I~lnt~V~~I~~~~~~v~V~~-~g~~~~ad~VI~AvP~~ 296 (688)
+.+.+.++..+++++.|++|+..++.+.|++ +|++++|+.||-|.++.
T Consensus 93 l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 93 LLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPS 141 (374)
T ss_pred HHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcc
Confidence 3333333445889999999999998877777 88899999999999854
No 80
>PRK11445 putative oxidoreductase; Provisional
Probab=98.79 E-value=3.2e-06 Score=91.46 Aligned_cols=46 Identities=11% Similarity=0.094 Sum_probs=37.3
Q ss_pred HHcCCcccCceEEEEEecCCeEEEEE--CCE--EEEecEEEEcCCCCccc
Q 005607 254 VENVPILYEKTVHTIRYGSDGVQVLA--GSQ--VFEGDMVLCTVPLGVLK 299 (688)
Q Consensus 254 ~~~l~I~lnt~V~~I~~~~~~v~V~~--~g~--~~~ad~VI~AvP~~~l~ 299 (688)
..++++++++.|++|+.+++++.|+. +|+ +++||.||.|.......
T Consensus 110 ~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~v 159 (351)
T PRK11445 110 PASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANSMV 159 (351)
T ss_pred hcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCcHH
Confidence 35788999999999999888888775 553 68999999999876443
No 81
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.78 E-value=3e-08 Score=111.30 Aligned_cols=39 Identities=21% Similarity=0.398 Sum_probs=34.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC-C-CcEEEEecCCCCcc
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRL-G-FRVTVLEGRKRAGG 84 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~-G-~~V~VLEa~~rvGG 84 (688)
..+|||||||||.|+++||+|++. + .+|+|||+.+.+|.
T Consensus 44 ~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~a~ 84 (497)
T PTZ00383 44 DVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFAL 84 (497)
T ss_pred CcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcchhh
Confidence 358999999999999999999996 3 69999999887653
No 82
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.78 E-value=1.2e-07 Score=111.20 Aligned_cols=39 Identities=33% Similarity=0.492 Sum_probs=35.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCccee
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~ 86 (688)
+|||||||||+|+++|++|+++|++|+|||+...+|+.+
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~~~ga 299 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGA 299 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCccccC
Confidence 699999999999999999999999999999987776543
No 83
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.77 E-value=2.1e-06 Score=94.25 Aligned_cols=32 Identities=41% Similarity=0.574 Sum_probs=31.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~ 79 (688)
+||+|||||+||++||+.|++.|++|+|+|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 69999999999999999999999999999997
No 84
>PRK07236 hypothetical protein; Provisional
Probab=98.77 E-value=1.1e-07 Score=104.31 Aligned_cols=44 Identities=9% Similarity=-0.064 Sum_probs=37.4
Q ss_pred CCcccCceEEEEEecCCeEEEEE-CCEEEEecEEEEcCCCCcccC
Q 005607 257 VPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKS 300 (688)
Q Consensus 257 l~I~lnt~V~~I~~~~~~v~V~~-~g~~~~ad~VI~AvP~~~l~~ 300 (688)
.+|+++++|++|+.++++|+|+. +|+++++|.||.|-..+...+
T Consensus 113 ~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~vR 157 (386)
T PRK07236 113 ERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTVR 157 (386)
T ss_pred cEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCchHH
Confidence 35999999999999988898888 888999999999977655443
No 85
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.75 E-value=2.4e-06 Score=93.50 Aligned_cols=37 Identities=46% Similarity=0.696 Sum_probs=33.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCc
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvG 83 (688)
++|||||||||+||++||+|++.|.+|+|+|+..-.+
T Consensus 4 ~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~ 40 (387)
T COG0665 4 KMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40 (387)
T ss_pred cceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence 5899999999999999999999999999999966544
No 86
>PRK06126 hypothetical protein; Provisional
Probab=98.75 E-value=6.6e-07 Score=102.77 Aligned_cols=35 Identities=34% Similarity=0.508 Sum_probs=32.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~r 81 (688)
.+||+|||||++||++|..|++.|++|+|+|+++.
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 48999999999999999999999999999998763
No 87
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.74 E-value=4.2e-09 Score=102.53 Aligned_cols=69 Identities=28% Similarity=0.468 Sum_probs=44.9
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceeeeeecCCCCCCCCceeeeccceeecCC-CCcHHHHHHHHhC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGT-LGNPLGILAKQLG 126 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~-~~~~l~~L~~~LG 126 (688)
+||+|||||+|||+||++|+++|++|+|||++..+||.++.- ++.|+.. -+.+-..+++++|
T Consensus 18 ~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~G-----------------g~lf~~iVVq~~a~~iL~elg 80 (230)
T PF01946_consen 18 YDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGG-----------------GMLFNKIVVQEEADEILDELG 80 (230)
T ss_dssp ESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS------------------CTT---EEEETTTHHHHHHHT
T ss_pred CCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccccc-----------------ccccchhhhhhhHHHHHHhCC
Confidence 899999999999999999999999999999999999876431 1111110 0123446889999
Q ss_pred Cceeeec
Q 005607 127 SLLHKVR 133 (688)
Q Consensus 127 l~~~~~~ 133 (688)
++.....
T Consensus 81 i~y~~~~ 87 (230)
T PF01946_consen 81 IPYEEYG 87 (230)
T ss_dssp ---EE-S
T ss_pred ceeEEeC
Confidence 9876543
No 88
>PLN02463 lycopene beta cyclase
Probab=98.72 E-value=4.6e-06 Score=92.79 Aligned_cols=35 Identities=31% Similarity=0.550 Sum_probs=32.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
..+||+|||||+|||++|+.|++.|++|+|+|++.
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~ 61 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP 61 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence 34899999999999999999999999999999865
No 89
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.72 E-value=3.4e-07 Score=104.92 Aligned_cols=38 Identities=37% Similarity=0.474 Sum_probs=34.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCc
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvG 83 (688)
.++||+|||||++||++|..|++.|++|+|||++..++
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~ 46 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLY 46 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 45899999999999999999999999999999987654
No 90
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.71 E-value=8.1e-07 Score=100.82 Aligned_cols=41 Identities=34% Similarity=0.555 Sum_probs=38.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCccee
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~ 86 (688)
..+||||||||++||+||+.++++|.+|+|||+...+||..
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s 100 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNT 100 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcc
Confidence 35899999999999999999999999999999999998843
No 91
>PRK07588 hypothetical protein; Provisional
Probab=98.70 E-value=1.3e-07 Score=103.95 Aligned_cols=50 Identities=22% Similarity=0.234 Sum_probs=41.2
Q ss_pred HHHHHcCCcccCceEEEEEecCCeEEEEE-CCEEEEecEEEEcCCCCcccC
Q 005607 251 QALVENVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKS 300 (688)
Q Consensus 251 ~~L~~~l~I~lnt~V~~I~~~~~~v~V~~-~g~~~~ad~VI~AvP~~~l~~ 300 (688)
+++..+++|+++++|++|+.++++|+|++ +|+++++|.||.|-......+
T Consensus 111 ~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~vR 161 (391)
T PRK07588 111 TAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSHVR 161 (391)
T ss_pred HhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCccch
Confidence 33444578999999999999999999888 888899999999998765544
No 92
>PRK06847 hypothetical protein; Provisional
Probab=98.68 E-value=1.3e-07 Score=103.03 Aligned_cols=44 Identities=23% Similarity=0.136 Sum_probs=38.2
Q ss_pred cCCcccCceEEEEEecCCeEEEEE-CCEEEEecEEEEcCCCCccc
Q 005607 256 NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLK 299 (688)
Q Consensus 256 ~l~I~lnt~V~~I~~~~~~v~V~~-~g~~~~ad~VI~AvP~~~l~ 299 (688)
+++|+++++|++|+.++++++|++ +|+++.+|.||.|.......
T Consensus 121 gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~~ 165 (375)
T PRK06847 121 GADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSKV 165 (375)
T ss_pred CCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcch
Confidence 678999999999999888888887 88899999999999865443
No 93
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.68 E-value=4.9e-07 Score=101.73 Aligned_cols=39 Identities=44% Similarity=0.549 Sum_probs=35.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC--Ccce
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR--AGGR 85 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~r--vGGr 85 (688)
.+||||||||++||+||+.++++|.+|+|||+... .||.
T Consensus 4 ~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~ 44 (466)
T PRK08274 4 MVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGN 44 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcc
Confidence 48999999999999999999999999999999874 5663
No 94
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.67 E-value=3.1e-06 Score=92.50 Aligned_cols=44 Identities=2% Similarity=0.010 Sum_probs=36.5
Q ss_pred CCcccCceEEEEEecCCeEEEEECCEEEEecEEEEcCCCCcccC
Q 005607 257 VPILYEKTVHTIRYGSDGVQVLAGSQVFEGDMVLCTVPLGVLKS 300 (688)
Q Consensus 257 l~I~lnt~V~~I~~~~~~v~V~~~g~~~~ad~VI~AvP~~~l~~ 300 (688)
++++++++|++|..++++++|..++.+++||.||-|-..+-..+
T Consensus 120 v~~~~~~~v~~i~~~~~~v~v~~~~~~~~adlvIgADG~~S~vR 163 (374)
T PRK06617 120 ITLIDNNQYQEVISHNDYSIIKFDDKQIKCNLLIICDGANSKVR 163 (374)
T ss_pred cEEECCCeEEEEEEcCCeEEEEEcCCEEeeCEEEEeCCCCchhH
Confidence 56889999999999888888888444999999999988765443
No 95
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.67 E-value=8.4e-07 Score=98.96 Aligned_cols=53 Identities=21% Similarity=0.175 Sum_probs=39.9
Q ss_pred HHHHHHHH----cCCcccCceEEEEEec-------CCeEEEEE-CCEEEEecEEEEcCCCCcccC
Q 005607 248 RLVQALVE----NVPILYEKTVHTIRYG-------SDGVQVLA-GSQVFEGDMVLCTVPLGVLKS 300 (688)
Q Consensus 248 ~L~~~L~~----~l~I~lnt~V~~I~~~-------~~~v~V~~-~g~~~~ad~VI~AvP~~~l~~ 300 (688)
.|.+.+.+ +++++++++|++|+.. +++++|+. +|++++||.||-|-......+
T Consensus 122 ~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR 186 (437)
T TIGR01989 122 SLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVR 186 (437)
T ss_pred HHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChhH
Confidence 34454443 3679999999999753 45678877 889999999999988765544
No 96
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.66 E-value=4.2e-07 Score=102.38 Aligned_cols=41 Identities=22% Similarity=0.311 Sum_probs=36.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHC--CCcEEEEecCCCCcceee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~--G~~V~VLEa~~rvGGr~~ 87 (688)
++|||||||||.|++.||+|++. |.+|+|||+.+.+|+...
T Consensus 5 ~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~sS 47 (494)
T PRK05257 5 KTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALESS 47 (494)
T ss_pred cceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhcC
Confidence 48999999999999999999985 789999999888776443
No 97
>PRK06996 hypothetical protein; Provisional
Probab=98.66 E-value=3.1e-06 Score=93.27 Aligned_cols=48 Identities=19% Similarity=0.219 Sum_probs=37.1
Q ss_pred HHHHHHHHH-cCCcccCceEEEEEecCCeEEEEE-CC---EEEEecEEEEcCC
Q 005607 247 GRLVQALVE-NVPILYEKTVHTIRYGSDGVQVLA-GS---QVFEGDMVLCTVP 294 (688)
Q Consensus 247 ~~L~~~L~~-~l~I~lnt~V~~I~~~~~~v~V~~-~g---~~~~ad~VI~AvP 294 (688)
..|.+.+.+ +++++++++|++|+.++++|+++. ++ ++++||.||-|-.
T Consensus 119 ~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG 171 (398)
T PRK06996 119 AALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEG 171 (398)
T ss_pred HHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCC
Confidence 344444433 567999999999999989998876 33 6899999999976
No 98
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.66 E-value=2.9e-07 Score=103.09 Aligned_cols=38 Identities=21% Similarity=0.313 Sum_probs=35.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHC--CCcEEEEecCCCCcc
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAGG 84 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~--G~~V~VLEa~~rvGG 84 (688)
.+|||||||||+|+++|+.|++. |.+|+|||+.+.+|-
T Consensus 6 ~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~ 45 (497)
T PRK13339 6 SKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAI 45 (497)
T ss_pred cCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcch
Confidence 47999999999999999999998 899999999777774
No 99
>PRK06753 hypothetical protein; Provisional
Probab=98.65 E-value=1.4e-07 Score=102.98 Aligned_cols=44 Identities=16% Similarity=0.074 Sum_probs=37.4
Q ss_pred CCcccCceEEEEEecCCeEEEEE-CCEEEEecEEEEcCCCCcccC
Q 005607 257 VPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKS 300 (688)
Q Consensus 257 l~I~lnt~V~~I~~~~~~v~V~~-~g~~~~ad~VI~AvP~~~l~~ 300 (688)
.+|+++++|++|+.++++++|++ +|+++.+|.||-|-..+...+
T Consensus 111 ~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~vR 155 (373)
T PRK06753 111 DAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSKVR 155 (373)
T ss_pred ceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchHHH
Confidence 35999999999998888899888 888999999999988665443
No 100
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.64 E-value=1.5e-07 Score=102.23 Aligned_cols=34 Identities=41% Similarity=0.673 Sum_probs=32.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~r 81 (688)
+||+|||||++|+++|++|++.|++|+|||+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5899999999999999999999999999999764
No 101
>PRK07538 hypothetical protein; Provisional
Probab=98.64 E-value=2.7e-06 Score=94.20 Aligned_cols=35 Identities=34% Similarity=0.603 Sum_probs=32.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rv 82 (688)
+||+|||||++||++|..|++.|++|+|+|+++.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 48999999999999999999999999999997654
No 102
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.63 E-value=4.3e-06 Score=96.32 Aligned_cols=54 Identities=26% Similarity=0.242 Sum_probs=43.1
Q ss_pred HHHHHHHHHcCC---cccCceEEEEEecCCeEEEEE-CCEEEEecEEEEcCCCCcccC
Q 005607 247 GRLVQALVENVP---ILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKS 300 (688)
Q Consensus 247 ~~L~~~L~~~l~---I~lnt~V~~I~~~~~~v~V~~-~g~~~~ad~VI~AvP~~~l~~ 300 (688)
..|.+.|.+.+. ++++++|++|+.++++|+|++ +|+++.+|.||.|-..+...+
T Consensus 194 ~~L~~~L~~alg~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~S~vR 251 (668)
T PLN02927 194 MTLQQILARAVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWSKVR 251 (668)
T ss_pred HHHHHHHHhhCCCCEEEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCCCCcHHH
Confidence 456666666552 788999999999999999888 888899999999998765443
No 103
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.62 E-value=5.4e-07 Score=101.34 Aligned_cols=38 Identities=24% Similarity=0.397 Sum_probs=34.8
Q ss_pred CcEEEECccHHHHHHHHHHHHC--CCcEEEEecCCCCcce
Q 005607 48 LRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAGGR 85 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~--G~~V~VLEa~~rvGGr 85 (688)
+|||||||||+|+++|++|++. |.+|+|||+.+.+|..
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~ 40 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAE 40 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhh
Confidence 5899999999999999999997 9999999998877743
No 104
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.61 E-value=4.1e-07 Score=100.19 Aligned_cols=53 Identities=23% Similarity=0.304 Sum_probs=41.5
Q ss_pred hHHHHHHHHH-----cCCcccCceEEEEEecCCeEEEEECCEEEEecEEEEcCCCCcc
Q 005607 246 NGRLVQALVE-----NVPILYEKTVHTIRYGSDGVQVLAGSQVFEGDMVLCTVPLGVL 298 (688)
Q Consensus 246 ~~~L~~~L~~-----~l~I~lnt~V~~I~~~~~~v~V~~~g~~~~ad~VI~AvP~~~l 298 (688)
...+.+.|.+ +++|+++++|++|..+++.+.|+++++++.+|.||+|+.....
T Consensus 104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~~~~~i~ad~VIlAtG~~s~ 161 (400)
T TIGR00275 104 AADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVETSGGEYEADKVILATGGLSY 161 (400)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEECCcEEEcCEEEECCCCccc
Confidence 4555555543 6789999999999888777777777778999999999986543
No 105
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.61 E-value=8.7e-07 Score=98.94 Aligned_cols=38 Identities=39% Similarity=0.590 Sum_probs=35.8
Q ss_pred cEEEECccHHHHHHHHHHHHCC-CcEEEEecCCCCccee
Q 005607 49 RVLVIGAGLAGLAAARQLMRLG-FRVTVLEGRKRAGGRV 86 (688)
Q Consensus 49 dVvIVGAGiaGLsAA~~L~k~G-~~V~VLEa~~rvGGr~ 86 (688)
||||||||++||+||+.++++| .+|+|||+.+..||..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s 39 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNS 39 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcc
Confidence 7999999999999999999999 9999999999988853
No 106
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.60 E-value=7.5e-07 Score=101.14 Aligned_cols=39 Identities=31% Similarity=0.452 Sum_probs=35.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcc
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGG 84 (688)
+.+||+|||||++|+++|+.|+++|++|+|+|+++..+|
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~G 43 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASA 43 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 359999999999999999999999999999999876555
No 107
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.59 E-value=2.5e-05 Score=90.85 Aligned_cols=38 Identities=39% Similarity=0.424 Sum_probs=35.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcc
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGG 84 (688)
.+||+|||||+|||+||..+++.|.+|+|+|+....||
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g 45 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKA 45 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence 48999999999999999999999999999999876555
No 108
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.59 E-value=8.4e-07 Score=98.02 Aligned_cols=38 Identities=39% Similarity=0.569 Sum_probs=33.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC-CC-cEEEEecCCCCcc
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRL-GF-RVTVLEGRKRAGG 84 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~-G~-~V~VLEa~~rvGG 84 (688)
..+||+|||||++|+++|++|++. |. +|+|||++. +|+
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~-~~~ 68 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW-LGG 68 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc-ccC
Confidence 348999999999999999999995 95 899999975 443
No 109
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.58 E-value=5.2e-07 Score=99.99 Aligned_cols=36 Identities=50% Similarity=0.714 Sum_probs=33.3
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcc
Q 005607 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (688)
Q Consensus 49 dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGG 84 (688)
||||||+|+|||+||..++++|.+|+|+|+....||
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg 36 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGG 36 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGS
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccccc
Confidence 899999999999999999999999999999999998
No 110
>PRK07121 hypothetical protein; Validated
Probab=98.58 E-value=1.7e-06 Score=97.98 Aligned_cols=41 Identities=41% Similarity=0.538 Sum_probs=38.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCccee
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~ 86 (688)
..+||||||||+|||+||+.++++|.+|+|||+....||..
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s 59 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGAT 59 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcc
Confidence 35899999999999999999999999999999999888844
No 111
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.56 E-value=1e-05 Score=94.21 Aligned_cols=37 Identities=30% Similarity=0.507 Sum_probs=33.2
Q ss_pred CCCCcEEEECccHHHHHHHHHHHH-CCCcEEEEecCCC
Q 005607 45 SNKLRVLVIGAGLAGLAAARQLMR-LGFRVTVLEGRKR 81 (688)
Q Consensus 45 ~~~~dVvIVGAGiaGLsAA~~L~k-~G~~V~VLEa~~r 81 (688)
.+++||+|||||++||++|..|++ .|++|+|||+++.
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 346899999999999999999999 5999999999753
No 112
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.56 E-value=2.1e-06 Score=98.36 Aligned_cols=40 Identities=35% Similarity=0.621 Sum_probs=37.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCccee
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~ 86 (688)
..+||||||+| +||+||...++.|.+|+|||+.+.+||.+
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~ 54 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGST 54 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcc
Confidence 35999999999 99999999999999999999999999955
No 113
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.56 E-value=4e-07 Score=100.24 Aligned_cols=40 Identities=53% Similarity=0.682 Sum_probs=37.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCccee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~ 86 (688)
..+|+|||||.|||+||+.|.+.|++|+|||+.+.+||--
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW 45 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLW 45 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceE
Confidence 3899999999999999999999999999999999999843
No 114
>PLN02697 lycopene epsilon cyclase
Probab=98.55 E-value=3.4e-05 Score=87.31 Aligned_cols=35 Identities=37% Similarity=0.589 Sum_probs=32.3
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 005607 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (688)
Q Consensus 45 ~~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~ 79 (688)
...+||+|||||+|||++|..|++.|++|+|+|+.
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~ 140 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 140 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence 34589999999999999999999999999999974
No 115
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.54 E-value=3.6e-07 Score=100.46 Aligned_cols=53 Identities=21% Similarity=0.261 Sum_probs=41.3
Q ss_pred HHHHHHHHH--cCCcccCceEEEEEecCCeEEEEE-CCEEEEecEEEEcCCCCccc
Q 005607 247 GRLVQALVE--NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLK 299 (688)
Q Consensus 247 ~~L~~~L~~--~l~I~lnt~V~~I~~~~~~v~V~~-~g~~~~ad~VI~AvP~~~l~ 299 (688)
+.|.+.+.+ +++++++++|++|..+++++.|+. +|+++.||.||.|.......
T Consensus 113 ~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 113 LSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSVV 168 (396)
T ss_pred HHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChHH
Confidence 344554433 367999999999998888888877 78889999999998766443
No 116
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.52 E-value=2e-06 Score=98.56 Aligned_cols=36 Identities=31% Similarity=0.487 Sum_probs=33.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rv 82 (688)
.+||+|||||+.|+++|+.|+++|++|+|||+++-.
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~ 41 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGLRCILVERHDIA 41 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 489999999999999999999999999999997643
No 117
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.52 E-value=4.3e-07 Score=95.53 Aligned_cols=38 Identities=39% Similarity=0.688 Sum_probs=34.8
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCccee
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~ 86 (688)
+||+|||||++||+||..|++.|++|+|+|+.+ +||++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~ 38 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQL 38 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcce
Confidence 589999999999999999999999999999876 77654
No 118
>PRK09897 hypothetical protein; Provisional
Probab=98.51 E-value=1.4e-06 Score=98.36 Aligned_cols=42 Identities=24% Similarity=0.533 Sum_probs=36.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCC--CcEEEEecCCCCc-ceeeee
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLG--FRVTVLEGRKRAG-GRVYTK 89 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G--~~V~VLEa~~rvG-Gr~~S~ 89 (688)
++|+|||||.+|+++|.+|.+.+ .+|+|||++..+| |.+++.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~ 46 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSD 46 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecC
Confidence 68999999999999999999865 4899999999998 665543
No 119
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.51 E-value=1.1e-06 Score=97.25 Aligned_cols=53 Identities=17% Similarity=0.250 Sum_probs=42.6
Q ss_pred HHHHHHHHHcC---CcccCceEEEEEecCCeEEEEE-CCEEEEecEEEEcCCCCccc
Q 005607 247 GRLVQALVENV---PILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLK 299 (688)
Q Consensus 247 ~~L~~~L~~~l---~I~lnt~V~~I~~~~~~v~V~~-~g~~~~ad~VI~AvP~~~l~ 299 (688)
..|.+.|.+.+ .++++++|++|+.++++|+|+. +|.++.+|.||.|-..+...
T Consensus 105 ~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~v 161 (414)
T TIGR03219 105 ADFLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSAL 161 (414)
T ss_pred HHHHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHHH
Confidence 34666665544 4899999999999888999887 88899999999998876543
No 120
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.48 E-value=3.7e-06 Score=96.99 Aligned_cols=41 Identities=44% Similarity=0.590 Sum_probs=38.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~ 87 (688)
.+||||||||++||+||+.++++|.+|+||||....||...
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~ 49 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTA 49 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccc
Confidence 48999999999999999999999999999999999988653
No 121
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.43 E-value=4.6e-06 Score=95.70 Aligned_cols=40 Identities=45% Similarity=0.707 Sum_probs=37.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCC--CCccee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK--RAGGRV 86 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~--rvGGr~ 86 (688)
.+||||||+|+|||+||..++++|.+|+|||+.+ .+||.+
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s 45 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQA 45 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCce
Confidence 4899999999999999999999999999999999 888855
No 122
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.42 E-value=1.2e-06 Score=89.94 Aligned_cols=62 Identities=16% Similarity=0.124 Sum_probs=44.7
Q ss_pred CeeecCCChHHHHHHHHH-cCCcccCceEEEEEec---CCeEEEEE-CCEEEEecEEEEcCCCCccc
Q 005607 238 DHCFLPGGNGRLVQALVE-NVPILYEKTVHTIRYG---SDGVQVLA-GSQVFEGDMVLCTVPLGVLK 299 (688)
Q Consensus 238 ~~~~~~gG~~~L~~~L~~-~l~I~lnt~V~~I~~~---~~~v~V~~-~g~~~~ad~VI~AvP~~~l~ 299 (688)
++.....-...+.+.+.+ |+.++-+..|+.+... +..+.|.| +|..+.|+.+|+|+.+...+
T Consensus 148 Gvi~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~k 214 (399)
T KOG2820|consen 148 GVINAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINK 214 (399)
T ss_pred cEeeHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHh
Confidence 344444445555555543 6779999999998853 34567766 88889999999999987665
No 123
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.40 E-value=2.2e-06 Score=94.42 Aligned_cols=35 Identities=40% Similarity=0.574 Sum_probs=32.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rv 82 (688)
.+|+|||||++||++|..|++.|++|+|+|+.+.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~ 37 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL 37 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 68999999999999999999999999999997754
No 124
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.39 E-value=8.2e-06 Score=94.98 Aligned_cols=38 Identities=39% Similarity=0.592 Sum_probs=35.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcc
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGG 84 (688)
.+||+|||||+|||+||..+++.|.+|+|+|+...+||
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~ 72 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRR 72 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence 48999999999999999999999999999999877753
No 125
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.38 E-value=1.6e-05 Score=88.60 Aligned_cols=39 Identities=33% Similarity=0.604 Sum_probs=36.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcc
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGG 84 (688)
..+||+||||||+|+.+|+.++-+|++|+|+|++|-..|
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsG 49 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASG 49 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCc
Confidence 459999999999999999999999999999999998776
No 126
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.37 E-value=1.7e-05 Score=91.57 Aligned_cols=42 Identities=40% Similarity=0.502 Sum_probs=38.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceee
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~ 87 (688)
..+||+|||+|++|++||+.++++|++|+|||+.+.+||.+.
T Consensus 11 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 52 (581)
T PRK06134 11 LECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTA 52 (581)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 459999999999999999999999999999999998898653
No 127
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.36 E-value=4.4e-05 Score=86.62 Aligned_cols=39 Identities=33% Similarity=0.453 Sum_probs=34.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCccee
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~ 86 (688)
+||+|||||++|+.||..+++.|.+|+|+|+....+|.+
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~ 39 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKC 39 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCC
Confidence 689999999999999999999999999999975544444
No 128
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.35 E-value=3.8e-06 Score=95.72 Aligned_cols=41 Identities=41% Similarity=0.603 Sum_probs=36.1
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceee
Q 005607 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 45 ~~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~ 87 (688)
...+||+|||||++||+||.+|++.|++|+|+|. ++||.+.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~--~~GG~~~ 249 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE--RFGGQVL 249 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCeee
Confidence 3458999999999999999999999999999975 4888653
No 129
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.35 E-value=1.5e-05 Score=91.93 Aligned_cols=40 Identities=33% Similarity=0.506 Sum_probs=37.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcce
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGR 85 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr 85 (688)
..+||||||+|++||+||..++++|.+|+|||+.+.+||.
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~ 49 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS 49 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence 3589999999999999999999999999999999988883
No 130
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.34 E-value=4.5e-06 Score=79.40 Aligned_cols=48 Identities=25% Similarity=0.354 Sum_probs=36.7
Q ss_pred HHHHHHHHcCCc-ccCceEEEEEecCCeEEEEE-CCEEEEecEEEEcCCC
Q 005607 248 RLVQALVENVPI-LYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPL 295 (688)
Q Consensus 248 ~L~~~L~~~l~I-~lnt~V~~I~~~~~~v~V~~-~g~~~~ad~VI~AvP~ 295 (688)
.+.+.+..+++| +...+|++|...++++.|++ +|..+.+|+||+|+..
T Consensus 106 ~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 106 RLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred HHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 334434345443 35779999999999998877 8999999999999864
No 131
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.34 E-value=5e-07 Score=92.90 Aligned_cols=39 Identities=41% Similarity=0.600 Sum_probs=37.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCccee
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~ 86 (688)
+||+|||||++||+||+.|+++|++|+|||++..+||.+
T Consensus 22 ~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~ 60 (254)
T TIGR00292 22 SDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS 60 (254)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 899999999999999999999999999999999998754
No 132
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=98.34 E-value=2.4e-05 Score=85.93 Aligned_cols=236 Identities=17% Similarity=0.188 Sum_probs=123.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceeeeeecCC-------C-------CCCCCceeeeccceeec
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEG-------G-------AGNRISASADLGGSVLT 111 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~S~~~~g-------~-------~g~~~~~~~D~G~~~~~ 111 (688)
+.+||||+|-|+.-...|..|++.|++|+.+|+++.-||...|..... . .+....+.+|+-+..+.
T Consensus 3 ~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKll~ 82 (438)
T PF00996_consen 3 EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKLLY 82 (438)
T ss_dssp SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--BEE
T ss_pred ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHhhh
Confidence 359999999999999999999999999999999999999998875321 0 02345678899888876
Q ss_pred CCCCcHHHHHHHHhCCc----eeeecCCccEEecCCcccChhhh-----------HHHHHHHHHHHHHHHHHHHHhh---
Q 005607 112 GTLGNPLGILAKQLGSL----LHKVRDKCPLYRLDGNSVDPEID-----------MKVEADFNRLLDKASRLRQLMG--- 173 (688)
Q Consensus 112 ~~~~~~l~~L~~~LGl~----~~~~~~~~~~~~~~G~~~~~~~~-----------~~~~~~~~~ll~~~~~~~~~~~--- 173 (688)
.. ..+-.++-.-++. ...+. ..+.+.+|+....|.. ..-+..+-+++..+..+...-.
T Consensus 83 a~--g~LV~lLi~S~V~rYLEFk~V~--~~~v~~~~~l~kVP~sr~dvf~s~~lsl~eKR~lmkFl~~v~~~~~~~~~~~ 158 (438)
T PF00996_consen 83 AR--GPLVKLLISSGVTRYLEFKAVD--GSYVYKNGKLHKVPCSREDVFKSKLLSLFEKRRLMKFLKFVANYEEDDPSTH 158 (438)
T ss_dssp TT--SHHHHHHHHCTGGGGSEEEEES--EEEEEETTEEEE--SSHHHHHC-TTS-HHHHHHHHHHHHHHHHGCTTBGGGS
T ss_pred cc--CHHHHHHHhCCcccceEEEEcc--eeEEEeCCEEeeCCCCHHHhhcCCCccHHHHHHHHHHHHHHhhcccCCcchh
Confidence 54 3455566556653 22222 2344456655433321 1122333344444433211100
Q ss_pred -cc-ccCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhh---hccccchhhhHH--HhhccCCCCCCCCCeeecCCCh
Q 005607 174 -EV-AMDVSLGSALETFWRVYWDSGNAEAMNLFNWHLANLE---YANASLLSKLSL--AFWDQDDPYDMGGDHCFLPGGN 246 (688)
Q Consensus 174 -~~-~~~~sl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~l~~--~~~~~~~~~~~~g~~~~~~gG~ 246 (688)
.. ....++.++++. ..+++....++...++... +........+.. .+......|. .+.+.++.-|.
T Consensus 159 ~~~~~~~~~~~e~~~~------f~L~~~~~~~i~haiaL~~~~~~~~~p~~~~l~ri~~yl~SlgryG-~sPfLyP~YG~ 231 (438)
T PF00996_consen 159 KGLDPEKKTFQELLKK------FGLSENLIDFIGHAIALSLDDSYLTEPAREGLERIKLYLSSLGRYG-KSPFLYPLYGL 231 (438)
T ss_dssp TTG-TTTSBHHHHHHH------TTS-HHHHHHHHHHTS-SSSSGGGGSBSHHHHHHHHHHHHHHCCCS-SSSEEEETT-T
T ss_pred hccccccccHHHHHHh------cCCCHHHHHHHHHhhhhccCcccccccHHHHHHHHHHHHHHHhccC-CCCEEEEccCC
Confidence 00 123344444432 2345555444432211111 001101111111 1111112222 23678888999
Q ss_pred HHHHHHHHH-----cCCcccCceEEEEEecCCe-EE-EEECCEEEEecEEEEc
Q 005607 247 GRLVQALVE-----NVPILYEKTVHTIRYGSDG-VQ-VLAGSQVFEGDMVLCT 292 (688)
Q Consensus 247 ~~L~~~L~~-----~l~I~lnt~V~~I~~~~~~-v~-V~~~g~~~~ad~VI~A 292 (688)
+.|++++++ |-...+|++|.+|..++++ +. |..+|++++|++||+.
T Consensus 232 GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~ge~v~~k~vI~d 284 (438)
T PF00996_consen 232 GELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSEGEVVKAKKVIGD 284 (438)
T ss_dssp THHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEETTEEEEESEEEEE
T ss_pred ccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEecCCEEEEcCEEEEC
Confidence 999999876 5569999999999985544 33 4459999999999964
No 133
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.32 E-value=5.8e-07 Score=92.65 Aligned_cols=39 Identities=38% Similarity=0.657 Sum_probs=37.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCccee
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~ 86 (688)
+||+|||||+|||+||++|++.|++|+|+|+...+||.+
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~ 64 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM 64 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Confidence 899999999999999999999999999999999998854
No 134
>PRK12839 hypothetical protein; Provisional
Probab=98.30 E-value=3e-05 Score=89.16 Aligned_cols=41 Identities=34% Similarity=0.475 Sum_probs=38.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~ 87 (688)
.+||+|||+|++||+||+.|++.|.+|+|||+...+||.+.
T Consensus 8 ~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 48 (572)
T PRK12839 8 TYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATA 48 (572)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence 48999999999999999999999999999999999998663
No 135
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.30 E-value=1.3e-05 Score=89.29 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=34.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcce
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGR 85 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr 85 (688)
.+||||||+|.|||+||..+. .|.+|+|+||.+..||.
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~ 41 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN 41 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc
Confidence 489999999999999999984 79999999999887763
No 136
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.28 E-value=7.2e-06 Score=93.36 Aligned_cols=40 Identities=43% Similarity=0.622 Sum_probs=35.4
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCccee
Q 005607 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (688)
Q Consensus 45 ~~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~ 86 (688)
...+||+|||||++||+||.+|++.|++|+|+|. ++||.+
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~ 249 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQV 249 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCcc
Confidence 3459999999999999999999999999999974 678755
No 137
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.24 E-value=1.8e-05 Score=89.53 Aligned_cols=38 Identities=42% Similarity=0.510 Sum_probs=34.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcce
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGR 85 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr 85 (688)
.+||+|||||+|||+||..+++.|. |+|+|+.+..||.
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~ 39 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGN 39 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCc
Confidence 3799999999999999999999997 9999999877763
No 138
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.24 E-value=3.6e-05 Score=84.16 Aligned_cols=44 Identities=32% Similarity=0.479 Sum_probs=39.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHC----CCcEEEEecCCCCcceeeeee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRL----GFRVTVLEGRKRAGGRVYTKK 90 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~----G~~V~VLEa~~rvGGr~~S~~ 90 (688)
+.++-|||+|||+|+||.+|.+. |.+|.|||+.+.+||.+-+..
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g 49 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAG 49 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCC
Confidence 46789999999999999999997 468999999999999886553
No 139
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.24 E-value=2.4e-05 Score=90.26 Aligned_cols=38 Identities=32% Similarity=0.504 Sum_probs=34.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCC--CcEEEEecCCCCcc
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLG--FRVTVLEGRKRAGG 84 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G--~~V~VLEa~~rvGG 84 (688)
.+||+|||||+|||+||..++++| .+|+|+|+....||
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg 42 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRS 42 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCch
Confidence 379999999999999999999874 89999999876665
No 140
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.23 E-value=4.6e-05 Score=87.95 Aligned_cols=41 Identities=37% Similarity=0.554 Sum_probs=38.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~ 87 (688)
.+||+|||+|.+||+||..++++|.+|+|||+.+.+||.+.
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~ 56 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTA 56 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc
Confidence 58999999999999999999999999999999999998553
No 141
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.22 E-value=2.8e-05 Score=89.73 Aligned_cols=38 Identities=32% Similarity=0.386 Sum_probs=35.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcc
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGG 84 (688)
.+||+|||||+|||+||..+++.|.+|+|+|+....||
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g 44 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRS 44 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 38999999999999999999999999999999877666
No 142
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.22 E-value=2.2e-05 Score=87.48 Aligned_cols=55 Identities=25% Similarity=0.320 Sum_probs=39.3
Q ss_pred ecCCChHHHHHHHHH-----cCCcccCceEEEEEec--CCeEE-EEE--CCEEEEecEEEEcCCC
Q 005607 241 FLPGGNGRLVQALVE-----NVPILYEKTVHTIRYG--SDGVQ-VLA--GSQVFEGDMVLCTVPL 295 (688)
Q Consensus 241 ~~~gG~~~L~~~L~~-----~l~I~lnt~V~~I~~~--~~~v~-V~~--~g~~~~ad~VI~AvP~ 295 (688)
++.++...+++.|.+ +++|+++++|++|..+ ++.+. |.. ++.++.++.||+|+.-
T Consensus 117 ~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG 181 (432)
T TIGR02485 117 FLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGG 181 (432)
T ss_pred eecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCC
Confidence 344555667776643 6789999999999876 34443 333 4468999999999973
No 143
>PLN02661 Putative thiazole synthesis
Probab=98.19 E-value=2.9e-06 Score=90.01 Aligned_cols=41 Identities=32% Similarity=0.596 Sum_probs=37.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHC-CCcEEEEecCCCCcceee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRL-GFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~-G~~V~VLEa~~rvGGr~~ 87 (688)
.+||+|||||++||+||++|++. |++|+|+|+...+||.+.
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~ 133 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAW 133 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccccee
Confidence 47999999999999999999986 899999999999988544
No 144
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.18 E-value=1.9e-05 Score=90.40 Aligned_cols=40 Identities=33% Similarity=0.409 Sum_probs=35.3
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcce
Q 005607 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGR 85 (688)
Q Consensus 45 ~~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr 85 (688)
+..+||+|||+|+|||+||..++ .|.+|+|+||....||.
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~ 46 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSA 46 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCc
Confidence 34589999999999999999996 59999999999887774
No 145
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.17 E-value=4.1e-05 Score=88.88 Aligned_cols=38 Identities=32% Similarity=0.474 Sum_probs=35.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcc
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGG 84 (688)
.+||+|||||+|||+||..+++.|.+|+|+||....||
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g 66 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRS 66 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCC
Confidence 48999999999999999999999999999999887666
No 146
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.16 E-value=4.8e-05 Score=88.09 Aligned_cols=38 Identities=29% Similarity=0.410 Sum_probs=35.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcc
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGG 84 (688)
.+||+|||||+|||+||..+++.|.+|+|+||....||
T Consensus 12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g 49 (598)
T PRK09078 12 KYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRS 49 (598)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCc
Confidence 48999999999999999999999999999999776665
No 147
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.16 E-value=2.4e-06 Score=95.15 Aligned_cols=43 Identities=37% Similarity=0.550 Sum_probs=39.0
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCc-EEEEecCCCCcceee
Q 005607 45 SNKLRVLVIGAGLAGLAAARQLMRLGFR-VTVLEGRKRAGGRVY 87 (688)
Q Consensus 45 ~~~~dVvIVGAGiaGLsAA~~L~k~G~~-V~VLEa~~rvGGr~~ 87 (688)
...+||+|||||+|||++|++|.++|.+ ++||||++++||-=+
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~ 49 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWR 49 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcch
Confidence 3458999999999999999999999999 999999999998433
No 148
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.15 E-value=3.2e-06 Score=94.53 Aligned_cols=42 Identities=36% Similarity=0.504 Sum_probs=39.0
Q ss_pred CCcEEEECccHHHHHHHHHHHH--CCCcEEEEecCCCCcceeee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMR--LGFRVTVLEGRKRAGGRVYT 88 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k--~G~~V~VLEa~~rvGGr~~S 88 (688)
..+|+|||||+|||+||+.|++ .|++|+|||+.+.+||.++.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS 69 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence 3789999999999999999997 79999999999999998864
No 149
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.14 E-value=5.8e-06 Score=91.60 Aligned_cols=75 Identities=36% Similarity=0.445 Sum_probs=59.4
Q ss_pred cccchhhHHHHHHHHHHHHHhhhhccccccchhccCCCCCCCCCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCc
Q 005607 4 ESVPKHCHSLLDSAYNYLVSNGYINFGVAPEIKEKIPVEPSSNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (688)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~in~g~~~~~~~~~p~~~~~~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvG 83 (688)
+.-+-+|+.+.-.+.+.-.+.|+|.. .++..... .+|+|||||++||+||+.|+++|++|+|+|+.+.+|
T Consensus 90 ~~~~v~i~~le~~i~d~~~~~g~i~~--------~~~~~~tg--~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~G 159 (457)
T COG0493 90 EELPVNIGALERAIGDKADREGWIPG--------ELPGSRTG--KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDG 159 (457)
T ss_pred CCCchhhhhHHHHHhhHHHHhCCCCC--------CCCCCCCC--CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCc
Confidence 34566777777777777777777652 12222222 789999999999999999999999999999999999
Q ss_pred ceeee
Q 005607 84 GRVYT 88 (688)
Q Consensus 84 Gr~~S 88 (688)
|++..
T Consensus 160 Gll~y 164 (457)
T COG0493 160 GLLLY 164 (457)
T ss_pred eeEEe
Confidence 98854
No 150
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.14 E-value=2.7e-06 Score=101.81 Aligned_cols=42 Identities=48% Similarity=0.651 Sum_probs=39.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceeee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYT 88 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~S 88 (688)
.++|+|||||+|||+||++|++.|++|+|+|+++.+||.++.
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~ 578 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN 578 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence 479999999999999999999999999999999999998854
No 151
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.13 E-value=2.5e-06 Score=102.80 Aligned_cols=41 Identities=39% Similarity=0.519 Sum_probs=39.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~ 87 (688)
.++|+|||||+|||+||++|++.|++|+|||+.+++||.++
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence 48999999999999999999999999999999999999875
No 152
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.13 E-value=2.2e-05 Score=89.15 Aligned_cols=38 Identities=24% Similarity=0.573 Sum_probs=34.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcce
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGR 85 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr 85 (688)
.+||+|||+|+|||+||..+++ |.+|+|+|+....||.
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~ 40 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSN 40 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCC
Confidence 4899999999999999999976 9999999999887764
No 153
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.12 E-value=5.7e-05 Score=87.60 Aligned_cols=37 Identities=27% Similarity=0.440 Sum_probs=33.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHC--CCcEEEEecCCCCc
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAG 83 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~--G~~V~VLEa~~rvG 83 (688)
.+||+|||||+|||+||..+++. |.+|+|+|+....+
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~ 49 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKR 49 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCC
Confidence 38999999999999999999998 99999999987543
No 154
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.10 E-value=2.9e-06 Score=95.33 Aligned_cols=40 Identities=43% Similarity=0.624 Sum_probs=38.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCccee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~ 86 (688)
.+||+|||||++|++||++|++.|++|+|+|+++.+||.+
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~ 44 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGC 44 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccc
Confidence 4999999999999999999999999999999998999876
No 155
>PRK12831 putative oxidoreductase; Provisional
Probab=98.09 E-value=4.3e-06 Score=93.83 Aligned_cols=41 Identities=39% Similarity=0.682 Sum_probs=38.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~ 87 (688)
.+||+|||||++||+||++|++.|++|+|+|+.+.+||.+.
T Consensus 140 ~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 48999999999999999999999999999999999999874
No 156
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.09 E-value=2.5e-06 Score=91.59 Aligned_cols=35 Identities=49% Similarity=0.684 Sum_probs=31.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rv 82 (688)
+||+|||||++||++|..|+++|++|+|||++..+
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 79999999999999999999999999999997754
No 157
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.09 E-value=6.8e-05 Score=86.62 Aligned_cols=39 Identities=31% Similarity=0.463 Sum_probs=35.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCC---CcEEEEecCCCCcce
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLG---FRVTVLEGRKRAGGR 85 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G---~~V~VLEa~~rvGGr 85 (688)
.+||+|||||+|||+||..+++.| .+|+|+|+....||.
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~ 46 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSH 46 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCC
Confidence 489999999999999999999998 899999998877763
No 158
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.06 E-value=4e-06 Score=94.21 Aligned_cols=39 Identities=36% Similarity=0.607 Sum_probs=37.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceee
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~ 87 (688)
+||+|||||++|++||++|++.|++|+|+|+ +.+||.|.
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~ 40 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCL 40 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCcee
Confidence 8999999999999999999999999999999 89999764
No 159
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.05 E-value=3.5e-06 Score=95.62 Aligned_cols=39 Identities=49% Similarity=0.677 Sum_probs=33.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCccee
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~ 86 (688)
++|+|||||+|||+||..|.+.|++|++||+++.+||-=
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W 40 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLW 40 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGG
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccC
Confidence 689999999999999999999999999999999999944
No 160
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.05 E-value=6.3e-05 Score=86.30 Aligned_cols=38 Identities=32% Similarity=0.336 Sum_probs=33.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC-Ccce
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR-AGGR 85 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~r-vGGr 85 (688)
.+||+|||||+|||+||..+ +.|.+|+|+|+... .||.
T Consensus 7 ~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~ 45 (543)
T PRK06263 7 ITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGC 45 (543)
T ss_pred ccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCcc
Confidence 38999999999999999999 99999999999764 4443
No 161
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.03 E-value=4.4e-06 Score=89.50 Aligned_cols=64 Identities=34% Similarity=0.467 Sum_probs=48.5
Q ss_pred hhccccccchhccCCCCC-CCCCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceeeee
Q 005607 26 YINFGVAPEIKEKIPVEP-SSNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTK 89 (688)
Q Consensus 26 ~in~g~~~~~~~~~p~~~-~~~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~S~ 89 (688)
++-++++.+....+++.- .+-..+|.|||||+|||+||..|++.|++|.|+|+++.+|||+...
T Consensus 102 llr~avakar~le~le~~~~~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~ 166 (622)
T COG1148 102 LLRMAVAKARKLEPLEEIKVEVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKL 166 (622)
T ss_pred HHHHHHHHHhhcCChhhHHHhhccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhh
Confidence 444555555444333321 1223689999999999999999999999999999999999997654
No 162
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.01 E-value=5.2e-06 Score=92.87 Aligned_cols=40 Identities=38% Similarity=0.579 Sum_probs=37.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~ 87 (688)
++||+|||||++|++||..+++.|++|+|+|+ +.+||.|.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~ 41 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCV 41 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceee
Confidence 48999999999999999999999999999998 58999764
No 163
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.01 E-value=5.4e-06 Score=93.24 Aligned_cols=41 Identities=37% Similarity=0.640 Sum_probs=38.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~ 87 (688)
++||+|||||.+|++||..+++.|++|+|+|+++.+||.|-
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~ 43 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCL 43 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeec
Confidence 48999999999999999999999999999999888999763
No 164
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.00 E-value=4.9e-06 Score=92.50 Aligned_cols=39 Identities=38% Similarity=0.507 Sum_probs=33.3
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceee
Q 005607 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 49 dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~ 87 (688)
||||||||++|++||..+++.|.+|+|+|+.+.+||.+.
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t 39 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMAT 39 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcce
Confidence 899999999999999999999999999999999999664
No 165
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.00 E-value=7e-06 Score=97.97 Aligned_cols=42 Identities=55% Similarity=0.680 Sum_probs=39.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceeee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYT 88 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~S 88 (688)
.++|+|||||+|||+||++|++.|++|+|+|+.+.+||.++.
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~ 580 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN 580 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence 479999999999999999999999999999999999998754
No 166
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.00 E-value=6.9e-06 Score=91.70 Aligned_cols=35 Identities=43% Similarity=0.590 Sum_probs=32.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
.++||+|||||+||++||+.|+++|++|+|+|++.
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 45899999999999999999999999999999965
No 167
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.00 E-value=5.7e-06 Score=92.61 Aligned_cols=40 Identities=35% Similarity=0.591 Sum_probs=36.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~ 87 (688)
.+||+|||||.+|++||..|++.|++|+|+|+ +.+||-|-
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~-~~~GG~c~ 41 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEA-KKLGGTCV 41 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecc-ccccccee
Confidence 59999999999999999999999999999998 56888663
No 168
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.98 E-value=0.00011 Score=84.69 Aligned_cols=40 Identities=28% Similarity=0.285 Sum_probs=35.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHC--CCcEEEEecCCCCccee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAGGRV 86 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~--G~~V~VLEa~~rvGGr~ 86 (688)
.+||+|||||+|||+||..++++ |.+|+|+||....||.+
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s 44 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHT 44 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCc
Confidence 38999999999999999999987 58999999998877733
No 169
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.98 E-value=6.9e-06 Score=91.71 Aligned_cols=40 Identities=35% Similarity=0.515 Sum_probs=36.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC-Cccee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR-AGGRV 86 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~r-vGGr~ 86 (688)
.+||+|||||.+|++||..|++.|++|+|+|+++. +||.|
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c 43 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTC 43 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceee
Confidence 49999999999999999999999999999999874 68865
No 170
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.97 E-value=8e-06 Score=92.73 Aligned_cols=39 Identities=31% Similarity=0.499 Sum_probs=35.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcc
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGG 84 (688)
.++||+|||||++|+++|++|+++|++|+|||+.+-.+|
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~G 43 (502)
T PRK13369 5 ETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQG 43 (502)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCC
Confidence 348999999999999999999999999999999875443
No 171
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.97 E-value=8.7e-06 Score=93.50 Aligned_cols=40 Identities=28% Similarity=0.450 Sum_probs=36.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~ 87 (688)
.+||+|||||+|||+||.+|++.|++|+|+|+ +.+||.+.
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~-~~~GG~~~ 43 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEK-DDFGGQIT 43 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEec-CCCCceEE
Confidence 48999999999999999999999999999999 47888764
No 172
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.95 E-value=8.6e-06 Score=91.02 Aligned_cols=41 Identities=34% Similarity=0.562 Sum_probs=36.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCC-CCcceee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK-RAGGRVY 87 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~-rvGGr~~ 87 (688)
.+||+|||||.+|++||++|++.|++|+|+|+.+ .+||.+.
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~ 44 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCI 44 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEe
Confidence 4899999999999999999999999999999976 4787663
No 173
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.95 E-value=1.2e-05 Score=89.98 Aligned_cols=41 Identities=49% Similarity=0.687 Sum_probs=38.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~ 87 (688)
.++|+|||||++||+||+.|++.|++|+|+|+.+.+||.+.
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT 173 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence 48999999999999999999999999999999999999764
No 174
>PRK06116 glutathione reductase; Validated
Probab=97.94 E-value=8.1e-06 Score=91.49 Aligned_cols=39 Identities=33% Similarity=0.656 Sum_probs=36.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCccee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~ 86 (688)
.+||+|||||++|++||..|++.|++|+|+|+. .+||-|
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c 42 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTC 42 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhh
Confidence 489999999999999999999999999999984 788866
No 175
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.94 E-value=9.6e-06 Score=91.33 Aligned_cols=41 Identities=37% Similarity=0.503 Sum_probs=38.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCccee
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~ 86 (688)
.++||+|||||.+|++||..|++.|++|+|+|+.+.+||-|
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c 43 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVC 43 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccc
Confidence 35999999999999999999999999999999988899865
No 176
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.93 E-value=1.1e-05 Score=98.30 Aligned_cols=41 Identities=41% Similarity=0.560 Sum_probs=38.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~ 87 (688)
.++|+|||||+|||+||++|++.|++|+|||+.+.+||.++
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~ 470 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQ 470 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceee
Confidence 47999999999999999999999999999999999999775
No 177
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.92 E-value=1e-05 Score=91.17 Aligned_cols=41 Identities=27% Similarity=0.547 Sum_probs=37.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceee
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~ 87 (688)
..+||+|||||.+|++||..|++.|++|+|+|+. .+||-|.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~ 43 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCL 43 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceE
Confidence 3599999999999999999999999999999985 7898664
No 178
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.92 E-value=9.6e-06 Score=91.21 Aligned_cols=40 Identities=40% Similarity=0.672 Sum_probs=36.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~ 87 (688)
.+||+|||||++|++||..|++.|++|+|+|+.. +||.|.
T Consensus 4 ~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~ 43 (462)
T PRK06416 4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCL 43 (462)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-ccccee
Confidence 4999999999999999999999999999999866 898664
No 179
>PLN02985 squalene monooxygenase
Probab=97.92 E-value=2.1e-05 Score=89.28 Aligned_cols=37 Identities=38% Similarity=0.538 Sum_probs=33.6
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 005607 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (688)
Q Consensus 45 ~~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~r 81 (688)
...+||+|||||++||++|+.|++.|++|+|+|+...
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 3458999999999999999999999999999999653
No 180
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.90 E-value=1.1e-05 Score=88.64 Aligned_cols=35 Identities=37% Similarity=0.582 Sum_probs=33.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~r 81 (688)
.+||+|||||++||++|..|++.|++|+|+|+++.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 37999999999999999999999999999999874
No 181
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=97.90 E-value=1.1e-05 Score=85.58 Aligned_cols=36 Identities=42% Similarity=0.708 Sum_probs=33.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rv 82 (688)
+.+||||||||+||++|..|.+.|++|+|||++..+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 478999999999999999999999999999997654
No 182
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.90 E-value=1e-05 Score=88.75 Aligned_cols=36 Identities=44% Similarity=0.629 Sum_probs=33.7
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcc
Q 005607 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (688)
Q Consensus 49 dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGG 84 (688)
||+|||||+|||++|+.|++.|++|+|+|+++.+||
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~ 36 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPG 36 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCC
Confidence 799999999999999999999999999999877664
No 183
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.89 E-value=0.00017 Score=82.03 Aligned_cols=34 Identities=38% Similarity=0.406 Sum_probs=30.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~r 81 (688)
..+||+|||+|+|||+||..++ |.+|+|+|+...
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 3489999999999999999996 579999999886
No 184
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.89 E-value=1.6e-05 Score=87.85 Aligned_cols=43 Identities=23% Similarity=0.356 Sum_probs=38.5
Q ss_pred CCcEEEECccHHHHHHHHHHH-HCCCcEEEEecCCCCcceeeee
Q 005607 47 KLRVLVIGAGLAGLAAARQLM-RLGFRVTVLEGRKRAGGRVYTK 89 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~-k~G~~V~VLEa~~rvGGr~~S~ 89 (688)
..+|+|||||+|||+||.+|. +.|++|+|||+.+.+||.++..
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~G 82 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYG 82 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEe
Confidence 378999999999999999765 6799999999999999988754
No 185
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.89 E-value=0.00034 Score=75.96 Aligned_cols=40 Identities=18% Similarity=0.341 Sum_probs=35.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC--CCcEEEEecCCCCcce
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAGGR 85 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~--G~~V~VLEa~~rvGGr 85 (688)
+.+|||+|||||.|.+.++.|++. .++|+|+|+-+.++.-
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A~E 43 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVALE 43 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcchhh
Confidence 358999999999999999999986 6899999999988743
No 186
>PRK06370 mercuric reductase; Validated
Probab=97.88 E-value=1.3e-05 Score=90.08 Aligned_cols=40 Identities=35% Similarity=0.570 Sum_probs=36.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCccee
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~ 86 (688)
+++||+|||||++|++||.+|++.|++|+|+|+. .+||.|
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c 43 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTC 43 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCce
Confidence 3599999999999999999999999999999985 677765
No 187
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.88 E-value=1.2e-05 Score=90.26 Aligned_cols=39 Identities=46% Similarity=0.698 Sum_probs=36.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCccee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~ 86 (688)
.+||||||||++|++||.+|++.|++|+|+|+ +.+||.+
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~ 41 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTC 41 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Cccccce
Confidence 48999999999999999999999999999999 7888865
No 188
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.88 E-value=1.7e-05 Score=94.51 Aligned_cols=41 Identities=41% Similarity=0.608 Sum_probs=38.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~ 87 (688)
.++|+|||||+|||+||++|++.|++|+|||+.+.+||.+.
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 47999999999999999999999999999999999999764
No 189
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.88 E-value=1.3e-05 Score=88.24 Aligned_cols=36 Identities=39% Similarity=0.576 Sum_probs=32.9
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCc
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvG 83 (688)
+||+|||||++|++||+.|+++|++|+|+|++...+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~ 36 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA 36 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 589999999999999999999999999999976543
No 190
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.87 E-value=1.4e-05 Score=93.65 Aligned_cols=42 Identities=45% Similarity=0.577 Sum_probs=39.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceeee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYT 88 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~S 88 (688)
.++|+|||||+|||+||++|++.|++|+|+|+.+.+||.+..
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~ 368 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF 368 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee
Confidence 479999999999999999999999999999999999997653
No 191
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.87 E-value=1.8e-05 Score=92.56 Aligned_cols=41 Identities=44% Similarity=0.679 Sum_probs=38.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~ 87 (688)
.++|+|||||++||+||+.|++.|++|+|+|+.+++||.++
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 47999999999999999999999999999999999999774
No 192
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.87 E-value=1.9e-05 Score=91.25 Aligned_cols=60 Identities=38% Similarity=0.545 Sum_probs=47.2
Q ss_pred HHHHHHhhhhccccccchhccCCCCCCCCCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceee
Q 005607 18 YNYLVSNGYINFGVAPEIKEKIPVEPSSNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 18 ~~~~~~~~~in~g~~~~~~~~~p~~~~~~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~ 87 (688)
.++-...|.|. +-+|..... .+|+|||+|+|||+||-+|-++|+.|+|+|+++|+||.+.
T Consensus 1766 id~af~egwm~--------p~pp~~rtg--~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ 1825 (2142)
T KOG0399|consen 1766 IDKAFEEGWMK--------PCPPAFRTG--KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLM 1825 (2142)
T ss_pred HHHHHHhcCCc--------cCCcccccC--cEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceee
Confidence 34444456554 233444333 8899999999999999999999999999999999999774
No 193
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.87 E-value=1.6e-05 Score=89.61 Aligned_cols=40 Identities=38% Similarity=0.570 Sum_probs=36.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~ 87 (688)
++||+|||||++|++||.+|++.|++|+|+|+ +.+||.|.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~-~~~GG~c~ 43 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEK-KYWGGVCL 43 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCcee
Confidence 48999999999999999999999999999998 57888763
No 194
>PRK10262 thioredoxin reductase; Provisional
Probab=97.86 E-value=1.7e-05 Score=84.69 Aligned_cols=41 Identities=27% Similarity=0.524 Sum_probs=36.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceee
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~ 87 (688)
+.+||+|||||+|||+||..|++.|++|+|+|+ ..+||.+.
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~-~~~gg~~~ 45 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITG-MEKGGQLT 45 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEe-ecCCCcee
Confidence 458999999999999999999999999999996 46787653
No 195
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.84 E-value=2.2e-05 Score=88.16 Aligned_cols=41 Identities=51% Similarity=0.785 Sum_probs=38.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~ 87 (688)
.++|+|||||++||+||+.|++.|++|+|+|+.+.+||.+.
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~ 180 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR 180 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence 48999999999999999999999999999999999998764
No 196
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.84 E-value=1.8e-05 Score=90.12 Aligned_cols=39 Identities=36% Similarity=0.626 Sum_probs=36.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCccee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~ 86 (688)
.+|||||||| +||+||+++++.|.+|+|||+...+||..
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t 45 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTT 45 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcce
Confidence 5899999999 99999999999999999999999888844
No 197
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.83 E-value=2.5e-05 Score=88.05 Aligned_cols=41 Identities=51% Similarity=0.712 Sum_probs=38.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~ 87 (688)
.++|+|||||++||+||+.|++.|++|+|+|+.+.+||.++
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR 183 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence 37999999999999999999999999999999999999764
No 198
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.83 E-value=2.1e-05 Score=96.09 Aligned_cols=42 Identities=45% Similarity=0.657 Sum_probs=39.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceeee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYT 88 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~S 88 (688)
.+||+|||||+|||+||.+|++.|++|+|+|+.+++||.+..
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 589999999999999999999999999999999999998864
No 199
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.82 E-value=0.00064 Score=69.71 Aligned_cols=38 Identities=42% Similarity=0.629 Sum_probs=35.5
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCccee
Q 005607 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (688)
Q Consensus 49 dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~ 86 (688)
.|||||+|+|||+|+..|...|-.|+++|+...+||..
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNS 48 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNS 48 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcc
Confidence 59999999999999999999988899999999999864
No 200
>PRK14694 putative mercuric reductase; Provisional
Probab=97.81 E-value=2.1e-05 Score=88.57 Aligned_cols=41 Identities=39% Similarity=0.551 Sum_probs=37.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceee
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~ 87 (688)
+.+||+|||||++|++||..|++.|++|+|+|+. .+||-|.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~ 45 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCV 45 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-cccccee
Confidence 4599999999999999999999999999999985 7888663
No 201
>PRK14727 putative mercuric reductase; Provisional
Probab=97.80 E-value=2.6e-05 Score=88.02 Aligned_cols=41 Identities=41% Similarity=0.597 Sum_probs=38.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~ 87 (688)
++||+|||||.+|++||..|++.|.+|+|+|+.+.+||.|.
T Consensus 16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~ 56 (479)
T PRK14727 16 QLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCV 56 (479)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEec
Confidence 49999999999999999999999999999999889999764
No 202
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.78 E-value=2.3e-05 Score=88.20 Aligned_cols=38 Identities=34% Similarity=0.540 Sum_probs=35.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCccee
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~ 86 (688)
+||||||||++|++||..|++.|++|+|+|+.. +||.|
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c 38 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTC 38 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCe
Confidence 699999999999999999999999999999865 78765
No 203
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.77 E-value=2.8e-05 Score=91.91 Aligned_cols=39 Identities=33% Similarity=0.454 Sum_probs=35.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcce
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGR 85 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr 85 (688)
.++|+|||||+|||+||++|++.|++|+|+|+.+..|+-
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP 421 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence 489999999999999999999999999999998776653
No 204
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.76 E-value=5e-05 Score=88.71 Aligned_cols=41 Identities=41% Similarity=0.599 Sum_probs=38.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~ 87 (688)
.++|+|||||++||+||+.|++.|++|+|+|+.+++||.++
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~ 350 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT 350 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence 48899999999999999999999999999999999999875
No 205
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.76 E-value=2.5e-05 Score=90.76 Aligned_cols=39 Identities=33% Similarity=0.526 Sum_probs=35.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcc
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGG 84 (688)
+.+||||||||+.|+++|+.|+++|++|+|+|+.+-.+|
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G 108 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG 108 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence 348999999999999999999999999999999865555
No 206
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.74 E-value=3.1e-05 Score=88.03 Aligned_cols=39 Identities=31% Similarity=0.468 Sum_probs=35.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecC-CCCcce
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR-KRAGGR 85 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~-~rvGGr 85 (688)
.+||||||||+||+.||+.+++.|++|+|+|++ +.+|+.
T Consensus 4 ~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m 43 (618)
T PRK05192 4 EYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM 43 (618)
T ss_pred cceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc
Confidence 499999999999999999999999999999997 477754
No 207
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.73 E-value=4.1e-05 Score=86.09 Aligned_cols=42 Identities=45% Similarity=0.590 Sum_probs=39.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceeee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYT 88 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~S 88 (688)
..+|+|||||++||+||+.|++.|++|+|+|+.+.+||.++.
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~ 182 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTF 182 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeee
Confidence 479999999999999999999999999999999999997753
No 208
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.73 E-value=3.4e-05 Score=84.03 Aligned_cols=37 Identities=46% Similarity=0.462 Sum_probs=33.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCc
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvG 83 (688)
+.||+|||||++|+.||+.|++.|++|+|+|+++...
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~ 38 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKK 38 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccC
Confidence 3789999999999999999999999999999877654
No 209
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.73 E-value=3.5e-05 Score=88.54 Aligned_cols=40 Identities=28% Similarity=0.509 Sum_probs=37.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCccee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~ 86 (688)
++||||||+|++||+||..|+++|.+|+|||+....||.+
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~ 45 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGST 45 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence 5899999999999999999999999999999998888854
No 210
>PRK13748 putative mercuric reductase; Provisional
Probab=97.72 E-value=3.1e-05 Score=89.33 Aligned_cols=40 Identities=43% Similarity=0.558 Sum_probs=37.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~ 87 (688)
.+||||||||.+|++||..|++.|.+|+|+|+. .+||-|.
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~ 137 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCV 137 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeecc
Confidence 489999999999999999999999999999996 8898653
No 211
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.72 E-value=3.2e-05 Score=84.29 Aligned_cols=37 Identities=38% Similarity=0.688 Sum_probs=34.3
Q ss_pred cEEEECccHHHHHHHHHHHHC--CCcEEEEecCCCCcce
Q 005607 49 RVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAGGR 85 (688)
Q Consensus 49 dVvIVGAGiaGLsAA~~L~k~--G~~V~VLEa~~rvGGr 85 (688)
||+|||||+|||++|+.|++. |++|+|+|+.+.+||.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~ 39 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN 39 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence 799999999999999999997 9999999999877763
No 212
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=3.3e-05 Score=81.39 Aligned_cols=42 Identities=33% Similarity=0.534 Sum_probs=34.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceeee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYT 88 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~S 88 (688)
.+||+|||||++||+||.+++++|.+++|++....+||....
T Consensus 3 ~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~ 44 (305)
T COG0492 3 IYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTK 44 (305)
T ss_pred eeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCcccc
Confidence 589999999999999999999999995555544667765543
No 213
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.72 E-value=3.4e-05 Score=87.04 Aligned_cols=32 Identities=41% Similarity=0.688 Sum_probs=31.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEec
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEG 78 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa 78 (688)
.+||+|||||++|++||.+|++.|.+|+|+|+
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 48999999999999999999999999999998
No 214
>PLN02815 L-aspartate oxidase
Probab=97.69 E-value=4.9e-05 Score=87.58 Aligned_cols=39 Identities=28% Similarity=0.486 Sum_probs=35.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcce
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGR 85 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr 85 (688)
..+||+|||+|+|||+||..+++.| +|+|+|+....||.
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~ 66 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESN 66 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCc
Confidence 4589999999999999999999999 99999999988773
No 215
>PTZ00058 glutathione reductase; Provisional
Probab=97.69 E-value=4.6e-05 Score=87.11 Aligned_cols=40 Identities=35% Similarity=0.523 Sum_probs=37.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~ 87 (688)
++||||||||.+|++||..+++.|.+|+|+|+. .+||.|-
T Consensus 48 ~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCl 87 (561)
T PTZ00058 48 VYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCV 87 (561)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-ccccccc
Confidence 589999999999999999999999999999985 7999773
No 216
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.68 E-value=8.8e-05 Score=82.54 Aligned_cols=50 Identities=18% Similarity=0.135 Sum_probs=37.4
Q ss_pred HHHHHHHHH-----cCCcccCceEEEEEecCCe-EEEEECCEEEEecEEEEcCCCC
Q 005607 247 GRLVQALVE-----NVPILYEKTVHTIRYGSDG-VQVLAGSQVFEGDMVLCTVPLG 296 (688)
Q Consensus 247 ~~L~~~L~~-----~l~I~lnt~V~~I~~~~~~-v~V~~~g~~~~ad~VI~AvP~~ 296 (688)
..+..+|+. |..|..||+|++|....++ +-|+|.-..+++.+||-|+...
T Consensus 187 ~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G~iet~~~VNaaGvW 242 (856)
T KOG2844|consen 187 AGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHGSIETECVVNAAGVW 242 (856)
T ss_pred HHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCcceecceEEechhHH
Confidence 455555543 6679999999999987655 5577766678899999887654
No 217
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.67 E-value=4.2e-05 Score=86.72 Aligned_cols=32 Identities=31% Similarity=0.527 Sum_probs=30.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEec
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEG 78 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa 78 (688)
.+||+|||||.+|++||.+|++.|.+|+|+|+
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~ 36 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDY 36 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 48999999999999999999999999999996
No 218
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.67 E-value=6.1e-05 Score=85.07 Aligned_cols=41 Identities=51% Similarity=0.707 Sum_probs=38.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~ 87 (688)
.++|+|||||++||+||..|++.|++|+|+|+.+++||.+.
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~ 183 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM 183 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 37999999999999999999999999999999999999775
No 219
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.65 E-value=5.3e-05 Score=87.05 Aligned_cols=41 Identities=32% Similarity=0.519 Sum_probs=37.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCccee
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~ 86 (688)
+.+||+|||+|++||+||..++++|.+|+|||+...+||.+
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~ 46 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGST 46 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCccc
Confidence 35899999999999999999999999999999999888754
No 220
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.64 E-value=8.1e-05 Score=76.38 Aligned_cols=40 Identities=45% Similarity=0.699 Sum_probs=34.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCC--CCccee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK--RAGGRV 86 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~--rvGGr~ 86 (688)
..||||||||++||.||.+|+.+|++|+|+|+.. .+||.+
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA 46 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA 46 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence 4899999999999999999999999999999854 355533
No 221
>PTZ00367 squalene epoxidase; Provisional
Probab=97.64 E-value=4.9e-05 Score=86.98 Aligned_cols=34 Identities=29% Similarity=0.502 Sum_probs=32.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
.+||+|||||++|+++|+.|+++|++|+|+|+..
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 4899999999999999999999999999999864
No 222
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.64 E-value=5e-05 Score=87.79 Aligned_cols=38 Identities=32% Similarity=0.425 Sum_probs=35.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcc
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGG 84 (688)
+.||+|||+|+|||+||..++++|.+|+|+|+....||
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g 40 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRS 40 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 47999999999999999999999999999999887665
No 223
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=97.64 E-value=4.1e-05 Score=80.71 Aligned_cols=43 Identities=40% Similarity=0.672 Sum_probs=37.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC------CCcEEEEecCCCCcceeee
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRL------GFRVTVLEGRKRAGGRVYT 88 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~------G~~V~VLEa~~rvGGr~~S 88 (688)
+.+||+|||||.|||+||.+|.+. .++|+|+|+...+||.+-|
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlS 123 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLS 123 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceec
Confidence 358999999999999999999774 4679999999999987654
No 224
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.63 E-value=0.00029 Score=78.88 Aligned_cols=33 Identities=39% Similarity=0.627 Sum_probs=27.7
Q ss_pred cEEEECccHHHHHHHHHHHHCC---CcEEEEecCCC
Q 005607 49 RVLVIGAGLAGLAAARQLMRLG---FRVTVLEGRKR 81 (688)
Q Consensus 49 dVvIVGAGiaGLsAA~~L~k~G---~~V~VLEa~~r 81 (688)
||||||||.||.++|..|++.+ ++|+|+|+.+.
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~ 36 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDI 36 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCC
Confidence 7999999999999999999998 89999999653
No 225
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.63 E-value=6.7e-05 Score=85.92 Aligned_cols=39 Identities=38% Similarity=0.532 Sum_probs=36.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcc
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGG 84 (688)
..+||+|||||+|||+||..+++.|.+|+|+||....||
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g 53 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDG 53 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCC
Confidence 358999999999999999999999999999999988776
No 226
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.62 E-value=5.6e-05 Score=82.79 Aligned_cols=37 Identities=43% Similarity=0.451 Sum_probs=33.9
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcc
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGG 84 (688)
.+|+|||||++|+.||+.|++.|++|+|+|+++.+|-
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT 37 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence 3799999999999999999999999999999887653
No 227
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.62 E-value=8.1e-05 Score=85.84 Aligned_cols=41 Identities=46% Similarity=0.673 Sum_probs=38.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~ 87 (688)
..+|+|||||++||+||+.|++.|++|+|+|+.+.+||.++
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR 177 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 47899999999999999999999999999999999999764
No 228
>PLN02507 glutathione reductase
Probab=97.61 E-value=6e-05 Score=85.45 Aligned_cols=32 Identities=38% Similarity=0.539 Sum_probs=30.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEec
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEG 78 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa 78 (688)
.+||+|||||.+|++||..+++.|.+|+|+|+
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 48999999999999999999999999999996
No 229
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.58 E-value=6.5e-05 Score=86.68 Aligned_cols=37 Identities=32% Similarity=0.520 Sum_probs=34.5
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcce
Q 005607 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGR 85 (688)
Q Consensus 49 dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr 85 (688)
||+|||||+|||+||..+++.|.+|+|+|+....||.
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~ 37 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSH 37 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCc
Confidence 7999999999999999999999999999998877663
No 230
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.57 E-value=6.9e-05 Score=86.28 Aligned_cols=38 Identities=34% Similarity=0.580 Sum_probs=35.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcc
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGG 84 (688)
.+||+|||||+|||+||..+++.|.+|+|+||....||
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g 42 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRS 42 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 48999999999999999999999999999999876665
No 231
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.56 E-value=7.4e-05 Score=86.88 Aligned_cols=38 Identities=32% Similarity=0.387 Sum_probs=35.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcc
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGG 84 (688)
.+||+|||||+|||+||..++++|.+|+|+||....||
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g 87 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRS 87 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCC
Confidence 47999999999999999999999999999999877666
No 232
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.54 E-value=8.3e-05 Score=86.00 Aligned_cols=38 Identities=37% Similarity=0.535 Sum_probs=35.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcc
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGG 84 (688)
.+||+|||||+|||+||..+++.|.+|+|||+....||
T Consensus 12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g 49 (591)
T PRK07057 12 KFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRS 49 (591)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence 48999999999999999999999999999999877666
No 233
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.54 E-value=5.7e-05 Score=79.60 Aligned_cols=36 Identities=31% Similarity=0.467 Sum_probs=30.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCC-CcEEEEecCCCCc
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLG-FRVTVLEGRKRAG 83 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G-~~V~VLEa~~rvG 83 (688)
|||||||||.+|..+|.+|+++| .+|+|||+..+..
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCT
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCc
Confidence 69999999999999999999997 6999999966533
No 234
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.53 E-value=2.7e-05 Score=74.92 Aligned_cols=66 Identities=27% Similarity=0.583 Sum_probs=50.4
Q ss_pred CcEEEECccHHHHHHHHHHHHC--CCcEEEEecCCCCcceeeeeecCCCCCCCCceeeeccceeecCC-CCcHHHHHHHH
Q 005607 48 LRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGT-LGNPLGILAKQ 124 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~--G~~V~VLEa~~rvGGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~-~~~~l~~L~~~ 124 (688)
.||||||||-+||+|||+++++ ..+|.|+|++-.+||-++ +|+..|... -+.|-..+++|
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW-----------------LGGQLFSAMvvRKPAhLFL~E 139 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW-----------------LGGQLFSAMVVRKPAHLFLQE 139 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc-----------------ccchhhhhhhhcChHHHHHHH
Confidence 5999999999999999999976 688999999999987543 233444321 23455668899
Q ss_pred hCCcee
Q 005607 125 LGSLLH 130 (688)
Q Consensus 125 LGl~~~ 130 (688)
+|++..
T Consensus 140 igvpYe 145 (328)
T KOG2960|consen 140 IGVPYE 145 (328)
T ss_pred hCCCcc
Confidence 999754
No 235
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.53 E-value=0.00012 Score=79.16 Aligned_cols=41 Identities=44% Similarity=0.613 Sum_probs=38.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~ 87 (688)
..+|+|||||++||+||..|++.|++|+|+|+.+.+||.+.
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~ 58 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML 58 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence 37899999999999999999999999999999999999764
No 236
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.53 E-value=8.9e-05 Score=83.39 Aligned_cols=33 Identities=42% Similarity=0.688 Sum_probs=31.8
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
+||+|||||+|||+||..+++.|.+|+|+|+..
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 799999999999999999999999999999975
No 237
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.53 E-value=5.9e-05 Score=74.33 Aligned_cols=33 Identities=42% Similarity=0.639 Sum_probs=30.7
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 005607 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (688)
Q Consensus 49 dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~r 81 (688)
||+|||||+|||+||.+|++.|.+|+|+|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 799999999999999999999999999987653
No 238
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.49 E-value=0.00012 Score=81.06 Aligned_cols=42 Identities=40% Similarity=0.654 Sum_probs=38.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceee
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~ 87 (688)
..||+||||||.+|.+||.++++.|.+|.|+|+..++||-|-
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCl 44 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCL 44 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEE
Confidence 359999999999999999999999999999999889998663
No 239
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.48 E-value=7.6e-05 Score=80.55 Aligned_cols=40 Identities=30% Similarity=0.473 Sum_probs=30.7
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEE-ecCCCCcceeee
Q 005607 49 RVLVIGAGLAGLAAARQLMRLGFRVTVL-EGRKRAGGRVYT 88 (688)
Q Consensus 49 dVvIVGAGiaGLsAA~~L~k~G~~V~VL-Ea~~rvGGr~~S 88 (688)
||+|||||+||+.||+.+++.|.+|+|+ +..+.+|....+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cn 41 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCN 41 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccch
Confidence 7999999999999999999999999999 666666654433
No 240
>PLN02546 glutathione reductase
Probab=97.47 E-value=0.00011 Score=83.93 Aligned_cols=32 Identities=31% Similarity=0.449 Sum_probs=30.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEec
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEG 78 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa 78 (688)
.+||+|||||.+|+.||..+++.|++|+|+|+
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 48999999999999999999999999999996
No 241
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.47 E-value=0.00011 Score=85.77 Aligned_cols=38 Identities=37% Similarity=0.385 Sum_probs=35.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcc
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGG 84 (688)
.+||+|||||+|||+||..++++|.+|+|+|+....+|
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s 42 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRS 42 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCc
Confidence 48999999999999999999999999999999876654
No 242
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.46 E-value=0.00015 Score=90.10 Aligned_cols=41 Identities=39% Similarity=0.572 Sum_probs=38.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCccee
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~ 86 (688)
..+||||||+|.|||+||...++.|.+|+||||....||..
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s 448 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNS 448 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCch
Confidence 35899999999999999999999999999999999999854
No 243
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.46 E-value=0.00019 Score=59.90 Aligned_cols=35 Identities=43% Similarity=0.638 Sum_probs=32.8
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCc
Q 005607 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (688)
Q Consensus 49 dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvG 83 (688)
+|+|||||..|+-+|..|++.|.+|+|+|+++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 58999999999999999999999999999988765
No 244
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.46 E-value=0.00012 Score=82.53 Aligned_cols=40 Identities=35% Similarity=0.526 Sum_probs=35.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHC-CCcEEEEecC--------CCCccee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRL-GFRVTVLEGR--------KRAGGRV 86 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~-G~~V~VLEa~--------~rvGGr~ 86 (688)
.+||||||||.+|..||..+++. |.+|+|+|+. +.+||-|
T Consensus 3 ~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtC 51 (486)
T TIGR01423 3 AFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTC 51 (486)
T ss_pred ccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCee
Confidence 49999999999999999999997 9999999984 5677765
No 245
>PRK13984 putative oxidoreductase; Provisional
Probab=97.45 E-value=0.00017 Score=84.03 Aligned_cols=42 Identities=38% Similarity=0.638 Sum_probs=38.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceee
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~ 87 (688)
...+|+|||||++||+||+.|++.|++|+|||+.+.+||...
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 347899999999999999999999999999999999998664
No 246
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.41 E-value=0.00015 Score=82.17 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=35.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcc
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGG 84 (688)
+||+|||+|++|+++|+.|+++|++|+|+|+....||
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence 6999999999999999999999999999999998875
No 247
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.40 E-value=0.0056 Score=66.17 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=34.7
Q ss_pred cCCcccCceEEEEEecCCeEE-EEE-CCEEEEecEEEEcCCCC
Q 005607 256 NVPILYEKTVHTIRYGSDGVQ-VLA-GSQVFEGDMVLCTVPLG 296 (688)
Q Consensus 256 ~l~I~lnt~V~~I~~~~~~v~-V~~-~g~~~~ad~VI~AvP~~ 296 (688)
|++|+++++|..|...++.+. |.+ +|+++.+|+||+|+.-.
T Consensus 187 G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grs 229 (486)
T COG2509 187 GGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRS 229 (486)
T ss_pred CcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcc
Confidence 578999999999999998654 333 88999999999999754
No 248
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.39 E-value=0.00018 Score=83.67 Aligned_cols=40 Identities=35% Similarity=0.604 Sum_probs=36.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecC-CCCccee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR-KRAGGRV 86 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~-~rvGGr~ 86 (688)
.+||||||||.+|++||..+++.|.+|+|+|+. +.+||-|
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtC 156 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTC 156 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccce
Confidence 589999999999999999999999999999974 4788865
No 249
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.37 E-value=0.00016 Score=83.62 Aligned_cols=38 Identities=24% Similarity=0.326 Sum_probs=34.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHC--CCcEEEEecCCCCcc
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAGG 84 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~--G~~V~VLEa~~rvGG 84 (688)
.+||+|||||+|||+||..+++. |.+|+|+||....||
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g 43 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS 43 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 38999999999999999999987 479999999887776
No 250
>PRK08275 putative oxidoreductase; Provisional
Probab=97.33 E-value=0.00019 Score=82.57 Aligned_cols=37 Identities=35% Similarity=0.419 Sum_probs=33.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHC--CCcEEEEecCCCCc
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAG 83 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~--G~~V~VLEa~~rvG 83 (688)
.+||+|||||+|||+||..+++. |.+|+|+|+....+
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~ 47 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKR 47 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCC
Confidence 38999999999999999999987 68999999987643
No 251
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.29 E-value=0.00025 Score=81.25 Aligned_cols=38 Identities=39% Similarity=0.515 Sum_probs=34.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcce
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGR 85 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr 85 (688)
.+||+|||+|+|||+||..+++. .+|+|+||....||.
T Consensus 8 ~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~ 45 (536)
T PRK09077 8 QCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGS 45 (536)
T ss_pred cCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCC
Confidence 48999999999999999999987 899999998887773
No 252
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.29 E-value=0.00025 Score=79.64 Aligned_cols=37 Identities=35% Similarity=0.542 Sum_probs=33.9
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCccee
Q 005607 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (688)
Q Consensus 49 dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~ 86 (688)
+|||||||.+|++||..|++.|.+|+|+|+. .+||-|
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c 38 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTC 38 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccC
Confidence 7999999999999999999999999999985 577755
No 253
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.28 E-value=0.00023 Score=84.82 Aligned_cols=34 Identities=38% Similarity=0.537 Sum_probs=31.5
Q ss_pred CcEEEECccHHHHHHHHHHHHC--CCcEEEEecCCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKR 81 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~--G~~V~VLEa~~r 81 (688)
++|+|||||++||+||..|++. |++|+|+|++..
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 4799999999999999999998 899999999764
No 254
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.27 E-value=0.00028 Score=79.45 Aligned_cols=39 Identities=38% Similarity=0.568 Sum_probs=35.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceee
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~ 87 (688)
+||+|||||.+|+.||..|++.|.+|+|+|+. .+||.|-
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~ 40 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAV 40 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCccc
Confidence 68999999999999999999999999999985 5888764
No 255
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.27 E-value=0.00034 Score=73.38 Aligned_cols=34 Identities=41% Similarity=0.574 Sum_probs=31.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~ 79 (688)
...||||||||++|-+-|+.|++.|-+|.|+|+.
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 3589999999999999999999999999999984
No 256
>PRK02106 choline dehydrogenase; Validated
Probab=97.27 E-value=0.00027 Score=81.49 Aligned_cols=35 Identities=31% Similarity=0.403 Sum_probs=32.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHH-CCCcEEEEecCC
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMR-LGFRVTVLEGRK 80 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k-~G~~V~VLEa~~ 80 (688)
..+||||||||.+|+.+|.+|++ .|++|+|||+..
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 34899999999999999999999 799999999975
No 257
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.26 E-value=0.00028 Score=79.70 Aligned_cols=33 Identities=36% Similarity=0.560 Sum_probs=31.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~ 79 (688)
.+||+|||||.+|+.||..+++.|.+|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 389999999999999999999999999999974
No 258
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.23 E-value=0.00031 Score=81.30 Aligned_cols=37 Identities=30% Similarity=0.330 Sum_probs=33.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcc
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGG 84 (688)
.+||+|||||+|||+||..+++. .+|+|+|+....||
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g 41 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS 41 (583)
T ss_pred eccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence 48999999999999999999987 89999999875554
No 259
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.23 E-value=0.00034 Score=77.16 Aligned_cols=34 Identities=47% Similarity=0.644 Sum_probs=32.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
++||+|||||++|++||..|+++|++|+|+|+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4899999999999999999999999999999864
No 260
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.22 E-value=0.00031 Score=72.32 Aligned_cols=32 Identities=34% Similarity=0.609 Sum_probs=30.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEec
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEG 78 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa 78 (688)
++||+|||||+|||+||..|+++|+++.|+-.
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~ 33 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNR 33 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeC
Confidence 48999999999999999999999999988876
No 261
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.22 E-value=0.00029 Score=81.66 Aligned_cols=35 Identities=37% Similarity=0.570 Sum_probs=32.4
Q ss_pred EEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcc
Q 005607 50 VLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (688)
Q Consensus 50 VvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGG 84 (688)
|+|||||+|||+||..+++.|.+|+|+|+...+||
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~ 35 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRR 35 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCC
Confidence 79999999999999999999999999999886653
No 262
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.17 E-value=0.00037 Score=80.55 Aligned_cols=33 Identities=24% Similarity=0.577 Sum_probs=30.9
Q ss_pred cEEEECccHHHHHHHHHHH----HCCCcEEEEecCCC
Q 005607 49 RVLVIGAGLAGLAAARQLM----RLGFRVTVLEGRKR 81 (688)
Q Consensus 49 dVvIVGAGiaGLsAA~~L~----k~G~~V~VLEa~~r 81 (688)
||+|||||+|||+||..++ ++|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 7999999999999999998 78999999999775
No 263
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=97.16 E-value=0.0055 Score=66.30 Aligned_cols=63 Identities=32% Similarity=0.434 Sum_probs=47.0
Q ss_pred CCCeeecCCChHHHHHHHHH--cCCcccCceEEEE-EecCCe---EEEEE----CCEEEEecEEEEcCCCCccc
Q 005607 236 GGDHCFLPGGNGRLVQALVE--NVPILYEKTVHTI-RYGSDG---VQVLA----GSQVFEGDMVLCTVPLGVLK 299 (688)
Q Consensus 236 ~g~~~~~~gG~~~L~~~L~~--~l~I~lnt~V~~I-~~~~~~---v~V~~----~g~~~~ad~VI~AvP~~~l~ 299 (688)
.++.+.+.||+.++++.|.+ +..+ +|++|++| ...+++ +.|++ +...-.+|.||+|+|++.-.
T Consensus 117 ~~gl~sV~GGN~qI~~~ll~~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~~~ 189 (368)
T PF07156_consen 117 TGGLWSVEGGNWQIFEGLLEASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQSF 189 (368)
T ss_pred cCCceEecCCHHHHHHHHHHHccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCccccc
Confidence 35678999999999999976 6679 99999999 444443 45655 22234579999999996443
No 264
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.16 E-value=0.00041 Score=79.12 Aligned_cols=39 Identities=36% Similarity=0.535 Sum_probs=36.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcce
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGR 85 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr 85 (688)
++||+|||||.|||.||..++++|.+|+|+|+....+|.
T Consensus 6 ~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~ 44 (562)
T COG1053 6 EFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGH 44 (562)
T ss_pred cCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCc
Confidence 589999999999999999999999999999998877743
No 265
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.13 E-value=0.00055 Score=71.82 Aligned_cols=45 Identities=27% Similarity=0.330 Sum_probs=40.2
Q ss_pred CcEEEECccHHHHHHHHHHHHC--CCcEEEEecCCCCcceeeeeecC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAGGRVYTKKME 92 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~--G~~V~VLEa~~rvGGr~~S~~~~ 92 (688)
+.|+|||+|+||+++|+.|.++ +++|+|+|+.+.++|.++...-+
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAP 67 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAP 67 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCC
Confidence 6899999999999999999985 68999999999999988765544
No 266
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0029 Score=67.07 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=40.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceeeeee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKK 90 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~S~~ 90 (688)
.+||+|+|-|+.=..-+..|+..|.+|+.+|+++.-||-..|.+
T Consensus 4 eyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~saslt 47 (440)
T KOG1439|consen 4 EYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLT 47 (440)
T ss_pred ceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCcccccee
Confidence 39999999999999989999999999999999999999887754
No 267
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.04 E-value=0.00091 Score=68.49 Aligned_cols=42 Identities=36% Similarity=0.578 Sum_probs=37.4
Q ss_pred CCCCCCCcEEEECccHHHHHHHHHHHHC--CCcEEEEecCCCCc
Q 005607 42 EPSSNKLRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAG 83 (688)
Q Consensus 42 ~~~~~~~dVvIVGAGiaGLsAA~~L~k~--G~~V~VLEa~~rvG 83 (688)
..+.+++|+|||||||.||+.|++|.-+ +.+|.|||+...++
T Consensus 43 s~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 43 SISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred ccccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 3445679999999999999999999987 89999999998876
No 268
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.039 Score=58.20 Aligned_cols=241 Identities=15% Similarity=0.128 Sum_probs=120.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceeeeeecCC-------------CCCCCCceeeeccceeecCC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEG-------------GAGNRISASADLGGSVLTGT 113 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~S~~~~g-------------~~g~~~~~~~D~G~~~~~~~ 113 (688)
.+||+|+|-|+.=..-+..|+-+|.+|+++|+++.-|+-..|.+... ..+....+-+|+=+..+...
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~k~~~drd~~iDL~PK~l~A~ 85 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPSKGGGDRDLNIDLIPKFLFAN 85 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccccccccccccchhhchhhhccc
Confidence 49999999999999999999999999999999999998877754321 00112233444444444322
Q ss_pred CCcHHHHHHHHhCCceee-e-cCCccEEecCCcccChhhh-----------HHHHHHHHHHHHHHHHHHHH---hhcccc
Q 005607 114 LGNPLGILAKQLGSLLHK-V-RDKCPLYRLDGNSVDPEID-----------MKVEADFNRLLDKASRLRQL---MGEVAM 177 (688)
Q Consensus 114 ~~~~l~~L~~~LGl~~~~-~-~~~~~~~~~~G~~~~~~~~-----------~~~~~~~~~ll~~~~~~~~~---~~~~~~ 177 (688)
..+..++-+.|+.... + .-...+++.+|+....+.. ..-....-+++.++..+... ......
T Consensus 86 --s~l~~iLi~t~v~~YLefk~i~~~~~~~~~k~~kVP~ne~ei~~s~~lsL~eKr~vmrFl~~V~n~~~~~~~~~~~~e 163 (434)
T COG5044 86 --SELLKILIETGVTEYLEFKQISGSFLYRPGKIYKVPYNEAEIFTSPLLSLFEKRRVMRFLKWVSNYAEQKSTLQELYE 163 (434)
T ss_pred --chHHHHHHHhChHhheeeeeccccEEecCCcEEECCccHHhhhcCCCcchhhHHHHHHHHHHHHhHHhhhhhchhhhh
Confidence 2233455556653221 1 1112333444444332211 11122333444444333321 111112
Q ss_pred CCCHHHHHHHHHHHhccCCC-HHHHHHHHHHHHhhhhccccchhhhHHHhhccCCCCCCCCCeeecCCChHHHHHHHHH-
Q 005607 178 DVSLGSALETFWRVYWDSGN-AEAMNLFNWHLANLEYANASLLSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQALVE- 255 (688)
Q Consensus 178 ~~sl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~~~~~~gG~~~L~~~L~~- 255 (688)
+..+ ++.+...++.... .+..-.--.....+..-....++.+ +.+......+. .....++.-|.+.|++-+++
T Consensus 164 ~k~~---~~~~~ekf~L~~~~~e~i~~~i~l~ldl~~p~re~~erI-l~Y~~Sf~~yg-~~pyLyp~YGl~El~QGFaRs 238 (434)
T COG5044 164 SKDT---MEFLFEKFGLSGATEEFIGHGIALSLDLDIPAREALERI-LRYMRSFGDYG-KSPYLYPRYGLGELSQGFARS 238 (434)
T ss_pred cccH---HHHHHHHHccCcchhhhhhhhhhhhccccCCchHHHHHH-HHHHHhhcccC-CCcceeeccCchhhhHHHHHh
Confidence 1112 2222222222111 1111000000000110011111111 11222111121 12366788889999998876
Q ss_pred ----cCCcccCceEEEEEecCCeEEEEECCEEEEecEEEEcCC
Q 005607 256 ----NVPILYEKTVHTIRYGSDGVQVLAGSQVFEGDMVLCTVP 294 (688)
Q Consensus 256 ----~l~I~lnt~V~~I~~~~~~v~V~~~g~~~~ad~VI~AvP 294 (688)
|.++.+|+++.+|...+...+|..++.+..|..||....
T Consensus 239 sav~GgtymLn~~i~ein~tk~v~~v~~~~~~~ka~KiI~~~~ 281 (434)
T COG5044 239 SAVYGGTYMLNQAIDEINETKDVETVDKGSLTQKAGKIISSPT 281 (434)
T ss_pred hhccCceeecCcchhhhccccceeeeecCcceeecCcccCCcc
Confidence 567999999999988777223333677888888886543
No 269
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.90 E-value=0.0009 Score=81.28 Aligned_cols=35 Identities=40% Similarity=0.431 Sum_probs=32.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~r 81 (688)
.+||+|||||+|||+||..+++.|.+|+|+|+...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 48999999999999999999999999999999774
No 270
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=96.90 E-value=0.00085 Score=69.34 Aligned_cols=35 Identities=31% Similarity=0.431 Sum_probs=32.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHC----CCcEEEEecCCC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRL----GFRVTVLEGRKR 81 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~----G~~V~VLEa~~r 81 (688)
.+||+|||||.+|++.|+.|.+. |++|+|+|+.+.
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 58999999999999999999875 799999999774
No 271
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.90 E-value=0.0052 Score=67.18 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=34.4
Q ss_pred cCCcccCceEEEEEecCCeEEEEE-CCEEEEecEEEEcCCC
Q 005607 256 NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPL 295 (688)
Q Consensus 256 ~l~I~lnt~V~~I~~~~~~v~V~~-~g~~~~ad~VI~AvP~ 295 (688)
+++++++++|++|..+++++.|.. +|+++.+|.||+++..
T Consensus 197 gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~ 237 (377)
T PRK04965 197 GVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGL 237 (377)
T ss_pred CCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCC
Confidence 677899999999998777777776 8889999999999874
No 272
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=96.87 E-value=0.0059 Score=68.66 Aligned_cols=34 Identities=35% Similarity=0.556 Sum_probs=31.8
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~r 81 (688)
.+|+|||||.+|+-+|..|.+.|.+|+|+|+.++
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 204 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDR 204 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCC
Confidence 6899999999999999999999999999998664
No 273
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.86 E-value=0.0011 Score=73.91 Aligned_cols=36 Identities=25% Similarity=0.436 Sum_probs=32.1
Q ss_pred CcEEEECccHHHHHHHHHHHHC--CCcEEEEecCCCCc
Q 005607 48 LRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAG 83 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~--G~~V~VLEa~~rvG 83 (688)
++|||||||++|++||..|.+. +++|+|+|+++.++
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~ 39 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS 39 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc
Confidence 5899999999999999999987 67899999987644
No 274
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=96.80 E-value=0.00051 Score=69.54 Aligned_cols=39 Identities=28% Similarity=0.629 Sum_probs=35.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCC------CcEEEEecCCCCcc
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLG------FRVTVLEGRKRAGG 84 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~G------~~V~VLEa~~rvGG 84 (688)
+..+|+||||||.|.++||+|++.+ +.|+|||++...||
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g 53 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG 53 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence 3488999999999999999999987 78999999888776
No 275
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.79 E-value=0.00096 Score=76.45 Aligned_cols=32 Identities=34% Similarity=0.342 Sum_probs=30.4
Q ss_pred cEEEECccHHHHHHHHHHHHCC-CcEEEEecCC
Q 005607 49 RVLVIGAGLAGLAAARQLMRLG-FRVTVLEGRK 80 (688)
Q Consensus 49 dVvIVGAGiaGLsAA~~L~k~G-~~V~VLEa~~ 80 (688)
|+||||||.+|+.+|.+|+++| ++|+|||+..
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 7999999999999999999998 7999999975
No 276
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.77 E-value=0.0013 Score=73.43 Aligned_cols=36 Identities=31% Similarity=0.563 Sum_probs=31.9
Q ss_pred CcEEEECccHHHHHHHHHHHHCC--CcEEEEecCCCCc
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLG--FRVTVLEGRKRAG 83 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G--~~V~VLEa~~rvG 83 (688)
++|||||||++||+||..|++.| .+|+|+|+++.++
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~ 38 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS 38 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce
Confidence 37999999999999999999875 5899999988754
No 277
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.76 E-value=0.0013 Score=75.26 Aligned_cols=35 Identities=31% Similarity=0.469 Sum_probs=32.5
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 005607 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (688)
Q Consensus 45 ~~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~ 79 (688)
..++|+||||+|.+|-+.|..|++.|++|+|||+.
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG 39 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG 39 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCC
Confidence 34599999999999999999999999999999994
No 278
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.76 E-value=0.0015 Score=71.39 Aligned_cols=33 Identities=33% Similarity=0.657 Sum_probs=31.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
+||+|||||++|+++|+.|++.|++|+|+|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 589999999999999999999999999999865
No 279
>PLN02785 Protein HOTHEAD
Probab=96.75 E-value=0.0018 Score=74.72 Aligned_cols=35 Identities=31% Similarity=0.471 Sum_probs=31.8
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 45 ~~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
+..+|+||||||.+|+..|.+|++ +.+|+|||+..
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 345999999999999999999999 68999999965
No 280
>PRK07846 mycothione reductase; Reviewed
Probab=96.74 E-value=0.011 Score=66.33 Aligned_cols=34 Identities=29% Similarity=0.491 Sum_probs=31.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~r 81 (688)
.+|+|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ 200 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGR 200 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence 6899999999999999999999999999998664
No 281
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=96.73 E-value=0.0045 Score=64.89 Aligned_cols=42 Identities=40% Similarity=0.547 Sum_probs=37.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHC----CCcEEEEecCCCCcceeee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRL----GFRVTVLEGRKRAGGRVYT 88 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~----G~~V~VLEa~~rvGGr~~S 88 (688)
++.+-|||+|+|||++|..|.+. |.++-|||--.-.||-.-.
T Consensus 22 qKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG 67 (587)
T COG4716 22 QKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDG 67 (587)
T ss_pred cceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCC
Confidence 37899999999999999999986 5689999999999996643
No 282
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.73 E-value=0.0017 Score=72.82 Aligned_cols=37 Identities=19% Similarity=0.361 Sum_probs=32.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCccee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~ 86 (688)
++||||||||.+|..||.. ++|.+|+|+|+ +.+||-|
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC 38 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTC 38 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCee
Confidence 4999999999999998754 47999999998 6788866
No 283
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=96.70 E-value=0.011 Score=64.78 Aligned_cols=52 Identities=15% Similarity=0.287 Sum_probs=41.1
Q ss_pred HHHHHHHH----HcCCcccCceEEEEEecCCeEEEEE-CCEEEEecEEEEcCCCCcc
Q 005607 247 GRLVQALV----ENVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVL 298 (688)
Q Consensus 247 ~~L~~~L~----~~l~I~lnt~V~~I~~~~~~v~V~~-~g~~~~ad~VI~AvP~~~l 298 (688)
..++.+|. +|++|+.+++|++|+.++++|.|++ +|.++.||+||+|+.....
T Consensus 135 ~~~~~~l~~~~~~G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 135 PQLCRALLAHAGIRLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred HHHHHHHHhccCCCcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcccc
Confidence 34444443 3778999999999999888888888 6667999999999987643
No 284
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.66 E-value=0.002 Score=70.91 Aligned_cols=37 Identities=22% Similarity=0.462 Sum_probs=32.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCC--cEEEEecCCCCc
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGF--RVTVLEGRKRAG 83 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~--~V~VLEa~~rvG 83 (688)
+.+|||||||+||++||..|++.|+ +|+|+++.+...
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~ 41 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP 41 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC
Confidence 3689999999999999999999987 699999987553
No 285
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.66 E-value=0.016 Score=65.14 Aligned_cols=35 Identities=34% Similarity=0.510 Sum_probs=32.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rv 82 (688)
.+|+|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 207 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRI 207 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCc
Confidence 57999999999999999999999999999987653
No 286
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.65 E-value=0.002 Score=71.64 Aligned_cols=38 Identities=32% Similarity=0.455 Sum_probs=33.2
Q ss_pred CCCCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 005607 44 SSNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (688)
Q Consensus 44 ~~~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~r 81 (688)
...+++|||||||.+||.||..|.+.+++|+|+|++++
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence 34458999999999999999999877899999998774
No 287
>PRK07846 mycothione reductase; Reviewed
Probab=96.64 E-value=0.0019 Score=72.34 Aligned_cols=36 Identities=19% Similarity=0.363 Sum_probs=31.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCccee
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~ 86 (688)
+||+|||||.+|.+||.. +.|.+|+|+|+ +.+||-|
T Consensus 2 yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GGtC 37 (451)
T PRK07846 2 YDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGGTC 37 (451)
T ss_pred CCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCcc
Confidence 899999999999999876 46999999998 5688766
No 288
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=96.64 E-value=0.016 Score=65.05 Aligned_cols=35 Identities=31% Similarity=0.548 Sum_probs=32.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rv 82 (688)
.+|+|||||..|+-.|..|++.|.+|+|+|+++++
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 210 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRL 210 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 67999999999999999999999999999987643
No 289
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=96.63 E-value=0.002 Score=67.76 Aligned_cols=42 Identities=36% Similarity=0.589 Sum_probs=39.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceee
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~ 87 (688)
..+||+|||+|+.|-.||..-++.|++...+|++..+||-|-
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcL 79 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCL 79 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceee
Confidence 359999999999999999999999999999999999998663
No 290
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.58 E-value=0.016 Score=64.92 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=34.0
Q ss_pred cCCcccCceEEEEEecCCeEEEEE-CCEEEEecEEEEcCCC
Q 005607 256 NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPL 295 (688)
Q Consensus 256 ~l~I~lnt~V~~I~~~~~~v~V~~-~g~~~~ad~VI~AvP~ 295 (688)
++++++++.|++|+.+++++.|+. +|+++.+|.||++++.
T Consensus 223 gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~ 263 (452)
T TIGR03452 223 KWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGR 263 (452)
T ss_pred CCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeecc
Confidence 567899999999998777777776 7778999999999973
No 291
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.47 E-value=0.0029 Score=69.46 Aligned_cols=39 Identities=41% Similarity=0.654 Sum_probs=36.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCccee
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~ 86 (688)
.+|+|||||..||.+|..|++.|++|+|+|+.+++||+.
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~ 175 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQL 175 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhh
Confidence 789999999999999999999999999999999988644
No 292
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.43 E-value=0.0034 Score=67.58 Aligned_cols=35 Identities=29% Similarity=0.334 Sum_probs=27.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCC-CcEEEEecCCC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLG-FRVTVLEGRKR 81 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G-~~V~VLEa~~r 81 (688)
.+|+|+||.|+++|+-|..|.+.+ .+++.||+++.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 379999999999999999999886 89999999774
No 293
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.25 E-value=0.0036 Score=64.66 Aligned_cols=34 Identities=44% Similarity=0.517 Sum_probs=31.8
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~r 81 (688)
..|.|||||+||.-|||+|+++|++|.|+|-++.
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 5699999999999999999999999999998764
No 294
>PRK06116 glutathione reductase; Validated
Probab=96.24 E-value=0.025 Score=63.41 Aligned_cols=34 Identities=29% Similarity=0.340 Sum_probs=31.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~r 81 (688)
.+|+|||||.+|+-.|..|++.|.+|+++++.++
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 201 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDA 201 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 6799999999999999999999999999998653
No 295
>PLN02507 glutathione reductase
Probab=96.23 E-value=0.037 Score=62.87 Aligned_cols=40 Identities=15% Similarity=0.291 Sum_probs=34.3
Q ss_pred cCCcccCceEEEEEecCCeEEEEE-CCEEEEecEEEEcCCC
Q 005607 256 NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPL 295 (688)
Q Consensus 256 ~l~I~lnt~V~~I~~~~~~v~V~~-~g~~~~ad~VI~AvP~ 295 (688)
+++|++++.|++|+.+++++.+.+ +|+++.+|.||++++.
T Consensus 258 GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~ 298 (499)
T PLN02507 258 GINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGR 298 (499)
T ss_pred CCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecC
Confidence 678999999999998777777777 7788999999999873
No 296
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.82 E-value=0.0099 Score=65.06 Aligned_cols=38 Identities=29% Similarity=0.643 Sum_probs=33.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHC----CCcEEEEecCCCCcce
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRL----GFRVTVLEGRKRAGGR 85 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~----G~~V~VLEa~~rvGGr 85 (688)
+++|+|||+|.+|++.|.+|.+. +. |.|+|.+...|+-
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~-Isi~e~~~~~G~G 42 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGL-ISIFEPRPNFGQG 42 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCc-eEEeccccccCCC
Confidence 37899999999999999999985 33 9999999998853
No 297
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=95.74 E-value=0.0074 Score=66.01 Aligned_cols=32 Identities=56% Similarity=0.721 Sum_probs=29.9
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 005607 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (688)
Q Consensus 49 dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~r 81 (688)
||+|||+|+|||+||..|.+. ++|+|+=+...
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~ 40 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPL 40 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCC
Confidence 899999999999999999988 99999999664
No 298
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=95.58 E-value=0.015 Score=63.51 Aligned_cols=33 Identities=15% Similarity=0.404 Sum_probs=29.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCC--CcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLG--FRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G--~~V~VLEa~~ 80 (688)
++|||||||+||+++|..|.+.+ .+|+|+++++
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence 68999999999999999998864 5799999866
No 299
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=95.51 E-value=0.016 Score=63.12 Aligned_cols=35 Identities=34% Similarity=0.665 Sum_probs=32.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCC--CcEEEEecCCC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLG--FRVTVLEGRKR 81 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G--~~V~VLEa~~r 81 (688)
+++|||||||.+||.+|..|.+.- .+|+|+|++++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~ 39 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDY 39 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCc
Confidence 478999999999999999999974 88999999885
No 300
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=95.41 E-value=0.014 Score=63.50 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=29.0
Q ss_pred cEEEECccHHHHHHHHHHHHC---CCcEEEEecCCC
Q 005607 49 RVLVIGAGLAGLAAARQLMRL---GFRVTVLEGRKR 81 (688)
Q Consensus 49 dVvIVGAGiaGLsAA~~L~k~---G~~V~VLEa~~r 81 (688)
+|||||||+||+.+|..|.+. +++|+|+|+++.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCC
Confidence 489999999999999999743 689999998765
No 301
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=95.30 E-value=0.49 Score=50.32 Aligned_cols=43 Identities=19% Similarity=0.170 Sum_probs=35.4
Q ss_pred cCCcccCceEEEEEecCCeEE-EEECCEEEEecEEEEcCCCCcc
Q 005607 256 NVPILYEKTVHTIRYGSDGVQ-VLAGSQVFEGDMVLCTVPLGVL 298 (688)
Q Consensus 256 ~l~I~lnt~V~~I~~~~~~v~-V~~~g~~~~ad~VI~AvP~~~l 298 (688)
|++|+.+++|++|..++++|. |.+++++++||.||+|+....-
T Consensus 151 g~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 151 GVEIIEHTEVQHIEIRGEKVTAIVTPSGDVQADQVVLAAGAWAG 194 (337)
T ss_pred CCEEEccceEEEEEeeCCEEEEEEcCCCEEECCEEEEcCChhhh
Confidence 778999999999999888765 5555458999999999987643
No 302
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=95.12 E-value=0.025 Score=62.32 Aligned_cols=36 Identities=31% Similarity=0.362 Sum_probs=33.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCc
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvG 83 (688)
.+|+|||||..|+-+|..|++.|.+|+|+|+.+++.
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l 180 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVM 180 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcch
Confidence 579999999999999999999999999999988654
No 303
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.021 Score=59.31 Aligned_cols=33 Identities=36% Similarity=0.581 Sum_probs=31.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEec
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEG 78 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa 78 (688)
..+|.||||||-+||+||.+.+..|.+|.+||.
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf 50 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDF 50 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence 349999999999999999999999999999997
No 304
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.02 E-value=0.027 Score=63.70 Aligned_cols=34 Identities=50% Similarity=0.784 Sum_probs=31.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~r 81 (688)
.+|+|||+|.+|+++|..|.+.|++|+++|+++.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 6899999999999999999999999999998663
No 305
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.90 E-value=0.037 Score=57.81 Aligned_cols=43 Identities=33% Similarity=0.442 Sum_probs=39.3
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceee
Q 005607 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 45 ~~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~ 87 (688)
.+.+|..|||||-.|+++|++-++.|.+|.|.|..-++||-|-
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCV 60 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCV 60 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEE
Confidence 3469999999999999999999999999999999889998663
No 306
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.72 E-value=0.031 Score=62.85 Aligned_cols=34 Identities=38% Similarity=0.512 Sum_probs=31.7
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCCCC
Q 005607 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (688)
Q Consensus 49 dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rv 82 (688)
+|+|||+|.+|++||+.|.+.|++|+++|++..+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5999999999999999999999999999987754
No 307
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.66 E-value=0.035 Score=52.75 Aligned_cols=32 Identities=38% Similarity=0.425 Sum_probs=30.2
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 49 dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
+|+|||||-.|.+.|..|+++|++|+|+.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999999865
No 308
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=94.57 E-value=0.039 Score=66.42 Aligned_cols=36 Identities=28% Similarity=0.512 Sum_probs=32.4
Q ss_pred CcEEEECccHHHHHHHHHHHHC----CCcEEEEecCCCCc
Q 005607 48 LRVLVIGAGLAGLAAARQLMRL----GFRVTVLEGRKRAG 83 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~----G~~V~VLEa~~rvG 83 (688)
.+|||||||++|+.+|..|.+. +++|+|++++++++
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~ 43 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA 43 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc
Confidence 5899999999999999999864 57999999999876
No 309
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=94.56 E-value=0.045 Score=61.12 Aligned_cols=35 Identities=37% Similarity=0.481 Sum_probs=32.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rv 82 (688)
.+|+|||||.+|+.+|..|++.|.+|+|+|+.+++
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 192 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI 192 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 57999999999999999999999999999998765
No 310
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=94.55 E-value=0.041 Score=61.02 Aligned_cols=47 Identities=30% Similarity=0.396 Sum_probs=37.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceeeeeecCC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEG 93 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~S~~~~g 93 (688)
.+||||||||.||.-||+..++.|.+++|+=-+-..=|.+.....-|
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIG 50 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIG 50 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccC
Confidence 38999999999999999999999999999887554444555543333
No 311
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=0.1 Score=51.38 Aligned_cols=43 Identities=30% Similarity=0.428 Sum_probs=36.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEec----CCCCcceeeee
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEG----RKRAGGRVYTK 89 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa----~~rvGGr~~S~ 89 (688)
+.+|+|||+|+++-+||.+++++-.+.+|||. ..-+||.+.|.
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTT 54 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTT 54 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeee
Confidence 35899999999999999999999999999996 34457877654
No 312
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=94.23 E-value=0.045 Score=65.70 Aligned_cols=47 Identities=17% Similarity=0.262 Sum_probs=35.9
Q ss_pred HHHHHH-HcCCcccCceEEEEEecCCeEEEEE-CCEEEEecEEEEcCCC
Q 005607 249 LVQALV-ENVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPL 295 (688)
Q Consensus 249 L~~~L~-~~l~I~lnt~V~~I~~~~~~v~V~~-~g~~~~ad~VI~AvP~ 295 (688)
+.+.|. .+++|++++.|++|..++....|+. +|+++.+|.||++++.
T Consensus 188 l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~ 236 (785)
T TIGR02374 188 LQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGI 236 (785)
T ss_pred HHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCC
Confidence 344444 3789999999999986554455666 8889999999999864
No 313
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=94.20 E-value=0.055 Score=61.09 Aligned_cols=35 Identities=34% Similarity=0.586 Sum_probs=32.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rv 82 (688)
.+|+|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~i 215 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRI 215 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcc
Confidence 58999999999999999999999999999997753
No 314
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=94.12 E-value=0.049 Score=58.31 Aligned_cols=35 Identities=31% Similarity=0.442 Sum_probs=30.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC----CCcEEEEecCC
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRL----GFRVTVLEGRK 80 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~----G~~V~VLEa~~ 80 (688)
+.+||+|||||+.|++-|..|... .++|+|+|..+
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~ 73 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD 73 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence 359999999999999999999865 46899999973
No 315
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=93.83 E-value=0.074 Score=51.75 Aligned_cols=32 Identities=38% Similarity=0.581 Sum_probs=27.8
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 49 dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
+|.|||||..|..-|..++..|++|+++|.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 58999999999999999999999999999843
No 316
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=93.80 E-value=0.075 Score=59.83 Aligned_cols=35 Identities=37% Similarity=0.565 Sum_probs=32.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rv 82 (688)
.+|+|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 201 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRL 201 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcC
Confidence 67999999999999999999999999999987654
No 317
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=93.76 E-value=0.056 Score=52.81 Aligned_cols=33 Identities=30% Similarity=0.488 Sum_probs=26.9
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
++|+|||.|..||..|..|++.|++|+.+|...
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 579999999999999999999999999999865
No 318
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=93.73 E-value=0.061 Score=60.97 Aligned_cols=38 Identities=26% Similarity=0.398 Sum_probs=33.3
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHC-CCcEEEEecCCCC
Q 005607 45 SNKLRVLVIGAGLAGLAAARQLMRL-GFRVTVLEGRKRA 82 (688)
Q Consensus 45 ~~~~dVvIVGAGiaGLsAA~~L~k~-G~~V~VLEa~~rv 82 (688)
...||.||||||-||..-|..|++. -++|+|||+...+
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 3469999999999999999999997 6799999995543
No 319
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=93.45 E-value=0.098 Score=58.81 Aligned_cols=35 Identities=31% Similarity=0.495 Sum_probs=32.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rv 82 (688)
.+|+|||||.+|+-+|..|.+.|.+|+|+|+.+++
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~l 205 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQL 205 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 57999999999999999999999999999997653
No 320
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=93.43 E-value=0.057 Score=55.41 Aligned_cols=32 Identities=41% Similarity=0.597 Sum_probs=27.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCC-------CcEEEEec
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLG-------FRVTVLEG 78 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G-------~~V~VLEa 78 (688)
.++|+|||||+.||++|..|.+.+ .+|+|++-
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~D 41 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISD 41 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecC
Confidence 479999999999999999998854 46888874
No 321
>PRK06370 mercuric reductase; Validated
Probab=93.42 E-value=0.096 Score=58.94 Aligned_cols=36 Identities=36% Similarity=0.519 Sum_probs=33.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCc
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvG 83 (688)
.+|+|||||..|+-+|..|++.|.+|+|+|+.+++.
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l 207 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL 207 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC
Confidence 689999999999999999999999999999987653
No 322
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=93.41 E-value=0.1 Score=58.56 Aligned_cols=35 Identities=29% Similarity=0.438 Sum_probs=32.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rv 82 (688)
.+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~i 201 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERV 201 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 57999999999999999999999999999997754
No 323
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=93.39 E-value=0.099 Score=59.00 Aligned_cols=35 Identities=37% Similarity=0.552 Sum_probs=32.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rv 82 (688)
.+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~i 209 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQV 209 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 57999999999999999999999999999997754
No 324
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=93.38 E-value=0.1 Score=58.81 Aligned_cols=35 Identities=43% Similarity=0.565 Sum_probs=32.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rv 82 (688)
.+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~i 209 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRI 209 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 67999999999999999999999999999987654
No 325
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.36 E-value=0.05 Score=56.83 Aligned_cols=40 Identities=43% Similarity=0.625 Sum_probs=32.4
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCccee
Q 005607 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (688)
Q Consensus 45 ~~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~ 86 (688)
+..+||.|||||++|-+||.+-+++|++.-|+- +|.||.+
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQv 248 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQV 248 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCee
Confidence 345999999999999999999999999865542 5666644
No 326
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=93.25 E-value=0.11 Score=57.76 Aligned_cols=35 Identities=34% Similarity=0.550 Sum_probs=32.9
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rv 82 (688)
.+++|||||..|+=-|..+++.|.+|+|+|+.+++
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i 208 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI 208 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 56999999999999999999999999999998864
No 327
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=93.23 E-value=0.12 Score=49.66 Aligned_cols=33 Identities=39% Similarity=0.480 Sum_probs=29.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
.+|+|+|+|.+|+.||..|...|.+|+++|...
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 789999999999999999999999999999743
No 328
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=93.20 E-value=0.11 Score=58.23 Aligned_cols=35 Identities=43% Similarity=0.663 Sum_probs=32.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rv 82 (688)
.+|+|||||.+|+-.|..|++.|.+|+|+|+.+++
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 204 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRI 204 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence 68999999999999999999999999999997754
No 329
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=93.19 E-value=0.029 Score=61.84 Aligned_cols=39 Identities=28% Similarity=0.515 Sum_probs=35.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcc
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGG 84 (688)
..+||+|||||.+|-.||.--+-+|.+|.++|+.|.--|
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SG 104 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASG 104 (680)
T ss_pred CcccEEEECCCccCcceeehhhcccceeEEEecccccCC
Confidence 458999999999999999999999999999999886554
No 330
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=93.18 E-value=0.12 Score=57.54 Aligned_cols=35 Identities=31% Similarity=0.505 Sum_probs=32.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rv 82 (688)
.+|+|||||.+|+-+|..|++.|.+|+|+++.+++
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 172 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERI 172 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCccc
Confidence 68999999999999999999999999999986643
No 331
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=93.13 E-value=0.1 Score=58.22 Aligned_cols=36 Identities=25% Similarity=0.436 Sum_probs=33.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCc
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvG 83 (688)
.+|+|||||..|+-.|..|++.|.+|+|+|+.+++.
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~ 184 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKIN 184 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 579999999999999999999999999999977653
No 332
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=93.08 E-value=0.064 Score=55.48 Aligned_cols=62 Identities=24% Similarity=0.394 Sum_probs=43.2
Q ss_pred HHHHhhhhccccccchhccCCCCCCCCCCcEEEECccHHHHHHHHHHHHC-CC-cEEEEecCCC
Q 005607 20 YLVSNGYINFGVAPEIKEKIPVEPSSNKLRVLVIGAGLAGLAAARQLMRL-GF-RVTVLEGRKR 81 (688)
Q Consensus 20 ~~~~~~~in~g~~~~~~~~~p~~~~~~~~dVvIVGAGiaGLsAA~~L~k~-G~-~V~VLEa~~r 81 (688)
||.-+..+..-+.+-+.+++......+.++|.|||||-+|++.|..+.+. |. +|.|+|-.++
T Consensus 12 ~l~t~~~~~~~~~~~~~~t~~~~~~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 12 FLSTNSTIKSQTGPFQLATMLARFARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred hhhhccccccccccEeehhhhhhhcccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 44444455544444444444444445569999999999999999999875 54 6999997654
No 333
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.07 E-value=0.11 Score=58.12 Aligned_cols=34 Identities=41% Similarity=0.702 Sum_probs=31.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
.++|+|||+|..|+++|..|++.|++|+++|...
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3789999999999999999999999999999864
No 334
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=93.06 E-value=0.11 Score=58.48 Aligned_cols=35 Identities=34% Similarity=0.464 Sum_probs=32.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rv 82 (688)
.+|+|||||..|+-+|..|++.|.+|+|+|+.+++
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~ 207 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRA 207 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 57999999999999999999999999999986643
No 335
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.04 E-value=0.13 Score=48.09 Aligned_cols=31 Identities=35% Similarity=0.537 Sum_probs=28.9
Q ss_pred EEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 50 VLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 50 VvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
|+|||+|-.|+..|+.|+++|++|+++-+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999998844
No 336
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=92.83 E-value=0.13 Score=58.11 Aligned_cols=35 Identities=40% Similarity=0.532 Sum_probs=32.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rv 82 (688)
.+|+|||||..|+-+|..|++.|.+|+|+|+.+++
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 218 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAF 218 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCcc
Confidence 58999999999999999999999999999987643
No 337
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=92.79 E-value=0.12 Score=50.84 Aligned_cols=34 Identities=29% Similarity=0.414 Sum_probs=28.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
..+|+|||+|.|+.-+|..|++.|.+|+++=+++
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 4789999999999999999999999999997764
No 338
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.76 E-value=0.12 Score=54.88 Aligned_cols=33 Identities=36% Similarity=0.440 Sum_probs=30.9
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
++|.|||+|.-|.+.|..|+++|++|++++++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 479999999999999999999999999999865
No 339
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=92.52 E-value=1.3 Score=47.82 Aligned_cols=39 Identities=21% Similarity=0.299 Sum_probs=28.8
Q ss_pred cCCcccCceEEEEEecCC-eEEEEE-C-----CEEEEecEEEEcCC
Q 005607 256 NVPILYEKTVHTIRYGSD-GVQVLA-G-----SQVFEGDMVLCTVP 294 (688)
Q Consensus 256 ~l~I~lnt~V~~I~~~~~-~v~V~~-~-----g~~~~ad~VI~AvP 294 (688)
.+.|+.+++|++++..++ ++.++. + ..++.+|.||+||.
T Consensus 293 ~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATG 338 (341)
T PF13434_consen 293 RLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATG 338 (341)
T ss_dssp -SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---
T ss_pred CeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCC
Confidence 456899999999999984 888776 2 35789999999986
No 340
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.50 E-value=0.15 Score=51.50 Aligned_cols=67 Identities=22% Similarity=0.355 Sum_probs=46.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceeeeeecCCCCCCCCceeeeccceeecCCCCcHHHHHHHHhCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGS 127 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~LGl 127 (688)
++++|||+|--|.+.|..|.+.|++|+++|..+.. +... ..-+.+.+.+.+...+ ...+++.|+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~---~~~~-----------~~~~~~~~~v~gd~t~--~~~L~~agi 64 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEER---VEEF-----------LADELDTHVVIGDATD--EDVLEEAGI 64 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHH---HHHH-----------hhhhcceEEEEecCCC--HHHHHhcCC
Confidence 47999999999999999999999999999986631 1110 0112455665543322 246778887
Q ss_pred cee
Q 005607 128 LLH 130 (688)
Q Consensus 128 ~~~ 130 (688)
+..
T Consensus 65 ~~a 67 (225)
T COG0569 65 DDA 67 (225)
T ss_pred CcC
Confidence 643
No 341
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=92.39 E-value=0.17 Score=56.46 Aligned_cols=34 Identities=32% Similarity=0.568 Sum_probs=31.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~r 81 (688)
.+|+|||||.+|+-+|..|.+.|.+|+|+++.++
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 183 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDR 183 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence 6799999999999999999999999999998664
No 342
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=92.33 E-value=0.15 Score=61.32 Aligned_cols=36 Identities=39% Similarity=0.503 Sum_probs=33.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCc
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvG 83 (688)
.+|+|||||.+|+-+|..|++.|.+|+|+|..+++-
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll 176 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLM 176 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchh
Confidence 579999999999999999999999999999987753
No 343
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=92.12 E-value=0.16 Score=52.56 Aligned_cols=46 Identities=37% Similarity=0.510 Sum_probs=39.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecC--------CCCcceeeeeecC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR--------KRAGGRVYTKKME 92 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~--------~rvGGr~~S~~~~ 92 (688)
..+|+|||||..|.-||....-.|-+|+++|.+ +..|||+.+....
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st 221 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYST 221 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcC
Confidence 368999999999999999999999999999987 5578887776543
No 344
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=92.01 E-value=0.2 Score=56.42 Aligned_cols=36 Identities=31% Similarity=0.553 Sum_probs=32.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCc
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvG 83 (688)
.+|+|||+|..|+-.|..|++.|.+|+|+|+.+++.
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l 213 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVL 213 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCC
Confidence 479999999999999999999999999999877543
No 345
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=91.98 E-value=0.095 Score=52.85 Aligned_cols=33 Identities=27% Similarity=0.579 Sum_probs=27.6
Q ss_pred cEEEECccHHHHHHHHHHHHC--CCcEEEEecCCC
Q 005607 49 RVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKR 81 (688)
Q Consensus 49 dVvIVGAGiaGLsAA~~L~k~--G~~V~VLEa~~r 81 (688)
+.+||||||||.+||-+|+.. ..+|+|+-+++.
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~ 35 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF 35 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence 368999999999999999985 457888887664
No 346
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=91.96 E-value=0.18 Score=57.51 Aligned_cols=33 Identities=42% Similarity=0.430 Sum_probs=30.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
.+|+|||||.+|+-+|..|++.|.+|+|+|..+
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~ 385 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD 385 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC
Confidence 589999999999999999999999999999755
No 347
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=91.83 E-value=0.24 Score=47.50 Aligned_cols=34 Identities=26% Similarity=0.318 Sum_probs=30.4
Q ss_pred CCCcEEEECccH-HHHHHHHHHHHCCCcEEEEecC
Q 005607 46 NKLRVLVIGAGL-AGLAAARQLMRLGFRVTVLEGR 79 (688)
Q Consensus 46 ~~~dVvIVGAGi-aGLsAA~~L~k~G~~V~VLEa~ 79 (688)
+.++|+|||+|- +|..+|.+|.+.|.+|+|..++
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 348999999995 7999999999999999999975
No 348
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.83 E-value=0.19 Score=52.78 Aligned_cols=33 Identities=36% Similarity=0.387 Sum_probs=30.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
.+|+|||+|.-|.+.|..|+++|++|+++|.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 579999999999999999999999999999743
No 349
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=91.72 E-value=0.25 Score=49.17 Aligned_cols=33 Identities=33% Similarity=0.499 Sum_probs=30.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
.+|+|||||-+|+..+..|.+.|.+|+|+....
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 689999999999999999999999999997654
No 350
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.60 E-value=0.2 Score=52.54 Aligned_cols=33 Identities=27% Similarity=0.513 Sum_probs=30.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
.+|+|||+|.-|...|..|+++|++|++++.++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 469999999999999999999999999999754
No 351
>PTZ00058 glutathione reductase; Provisional
Probab=91.60 E-value=0.22 Score=57.29 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=32.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rv 82 (688)
..+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~i 272 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRL 272 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccc
Confidence 368999999999999999999999999999987653
No 352
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=91.57 E-value=0.26 Score=52.43 Aligned_cols=34 Identities=32% Similarity=0.398 Sum_probs=31.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
+++|+|||+|.-|.+-|..|+++|++|+++-++.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 3789999999999999999999999999998743
No 353
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=91.56 E-value=0.22 Score=58.25 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=33.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCc
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvG 83 (688)
.+|+|||||..|+-.|..|++.|.+|+|+|+.+++.
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll 348 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL 348 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc
Confidence 579999999999999999999999999999987643
No 354
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=91.55 E-value=0.2 Score=60.44 Aligned_cols=36 Identities=39% Similarity=0.427 Sum_probs=33.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCc
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvG 83 (688)
.+++|||||+.||-+|..|++.|.+|+|+|..+++-
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll 181 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLM 181 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccch
Confidence 579999999999999999999999999999988753
No 355
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=91.50 E-value=0.26 Score=53.76 Aligned_cols=43 Identities=35% Similarity=0.448 Sum_probs=33.9
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceee
Q 005607 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 45 ~~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~ 87 (688)
...+||||||||.||.-||..-++.|.+.+||-.+-.-=|.+.
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~ms 68 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMS 68 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccc
Confidence 3459999999999999999999999999888876433333333
No 356
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.48 E-value=0.21 Score=52.35 Aligned_cols=33 Identities=39% Similarity=0.476 Sum_probs=30.8
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
.+|+|||+|.-|..-|..|+++|++|+++|.++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 479999999999999999999999999999855
No 357
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=91.48 E-value=0.24 Score=55.41 Aligned_cols=41 Identities=20% Similarity=0.270 Sum_probs=34.2
Q ss_pred HcCCcccCceEEEEEecCCeEEEEE-CCEEEEecEEEEcCCC
Q 005607 255 ENVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPL 295 (688)
Q Consensus 255 ~~l~I~lnt~V~~I~~~~~~v~V~~-~g~~~~ad~VI~AvP~ 295 (688)
.++++++++.|++|..+++++.|+. +++++.+|.||++++.
T Consensus 220 ~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~ 261 (446)
T TIGR01424 220 RGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGR 261 (446)
T ss_pred CCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCC
Confidence 3678999999999988777777766 7888999999999873
No 358
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=91.19 E-value=0.28 Score=51.97 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=30.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~ 79 (688)
.++|+|||+|--|...|++|+++|.+|+++.+.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 378999999999999999999999999999985
No 359
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.18 E-value=0.24 Score=52.70 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=30.8
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
.+|+|||+|.-|..-|..++.+|++|+++|..+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 579999999999999999999999999999855
No 360
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=91.11 E-value=0.26 Score=55.19 Aligned_cols=33 Identities=39% Similarity=0.556 Sum_probs=31.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
.+|+|||||..|+-+|..|.+.|.+|+|+++++
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 689999999999999999999999999999865
No 361
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=91.10 E-value=0.25 Score=56.40 Aligned_cols=33 Identities=45% Similarity=0.459 Sum_probs=30.8
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
.+|+|||||.+|+-+|..|+..|.+|+|++..+
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~ 384 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAP 384 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECc
Confidence 689999999999999999999999999998755
No 362
>PRK10262 thioredoxin reductase; Provisional
Probab=90.97 E-value=0.29 Score=52.12 Aligned_cols=33 Identities=27% Similarity=0.394 Sum_probs=31.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
.+|+|||+|.+|+-.|..|++.|.+|+++++.+
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence 689999999999999999999999999999865
No 363
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.95 E-value=0.33 Score=51.04 Aligned_cols=33 Identities=30% Similarity=0.311 Sum_probs=30.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
.+|+|||+|.-|...|..|+++|++|++++.+.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 679999999999999999999999999999743
No 364
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=90.85 E-value=0.43 Score=43.97 Aligned_cols=33 Identities=45% Similarity=0.568 Sum_probs=30.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCc-EEEEecC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFR-VTVLEGR 79 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~-V~VLEa~ 79 (688)
..+|+|||||=+|-++++.|.+.|.+ |+|+-++
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 47899999999999999999999987 9999874
No 365
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=90.83 E-value=0.29 Score=54.65 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=31.9
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rv 82 (688)
.+|+|||+|..|+-.|..|++.|.+|+|+|+.+++
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 193 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLF 193 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 57999999999999999999999999999986643
No 366
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.81 E-value=0.26 Score=55.49 Aligned_cols=34 Identities=26% Similarity=0.044 Sum_probs=31.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~r 81 (688)
.+|+|+|.|.+|.+||..|.+.|.+|+|.|.++.
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~ 42 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCNA 42 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence 6799999999999999999999999999997553
No 367
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=90.75 E-value=0.29 Score=51.55 Aligned_cols=31 Identities=29% Similarity=0.490 Sum_probs=29.3
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 005607 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (688)
Q Consensus 49 dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~ 79 (688)
+|+|||+|--|.+.|..|++.|++|+++.++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 6999999999999999999999999999974
No 368
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=90.74 E-value=0.25 Score=54.66 Aligned_cols=36 Identities=50% Similarity=0.704 Sum_probs=33.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rv 82 (688)
.++|+|+|-|.+|++||..|.+.|.+|++.|.+..+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 478999999999999999999999999999976654
No 369
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=90.52 E-value=0.28 Score=56.53 Aligned_cols=34 Identities=35% Similarity=0.469 Sum_probs=31.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~r 81 (688)
.+|+|||||.+|+-.|..|++.|.+|+|+++.++
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 6899999999999999999999999999998664
No 370
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=90.47 E-value=0.3 Score=52.47 Aligned_cols=33 Identities=30% Similarity=0.569 Sum_probs=30.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
++|.|||.|..||+.|..|++.|++|+.+|-..
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 579999999999999999999999999999744
No 371
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=90.40 E-value=0.33 Score=51.21 Aligned_cols=31 Identities=35% Similarity=0.518 Sum_probs=29.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEec
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEG 78 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa 78 (688)
++|+|||+|.-|.+.|..|+++|++|+++.+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 3699999999999999999999999999987
No 372
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=90.39 E-value=0.33 Score=52.14 Aligned_cols=32 Identities=31% Similarity=0.421 Sum_probs=30.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~ 79 (688)
++|.|||+|.-|.+.|..|+++|++|++++++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 67999999999999999999999999999974
No 373
>PRK04148 hypothetical protein; Provisional
Probab=90.38 E-value=0.27 Score=45.12 Aligned_cols=33 Identities=24% Similarity=0.470 Sum_probs=30.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~r 81 (688)
.+|++||.| .|...|..|++.|++|+.+|-+..
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 679999999 999999999999999999998765
No 374
>PRK12831 putative oxidoreductase; Provisional
Probab=90.25 E-value=0.35 Score=54.50 Aligned_cols=34 Identities=35% Similarity=0.546 Sum_probs=31.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
..+|+|||||..|+-+|..|.+.|.+|+|+++++
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 3689999999999999999999999999999754
No 375
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=90.23 E-value=0.36 Score=52.16 Aligned_cols=33 Identities=36% Similarity=0.495 Sum_probs=30.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCc-EEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFR-VTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~-V~VLEa~~ 80 (688)
.+|+|||+|..|+-+|..|.+.|.+ |+|+++.+
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 5799999999999999999999997 99998754
No 376
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=90.17 E-value=0.27 Score=43.09 Aligned_cols=33 Identities=39% Similarity=0.554 Sum_probs=30.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~ 79 (688)
..+|+|||||-.|..-+..|.+.|.+|+|+-..
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 478999999999999999999999999999887
No 377
>PLN02546 glutathione reductase
Probab=90.12 E-value=0.37 Score=55.45 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=32.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rv 82 (688)
.+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~i 287 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKV 287 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccc
Confidence 58999999999999999999999999999987654
No 378
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=90.06 E-value=0.41 Score=50.69 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=30.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCC-cEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~-~V~VLEa~~ 80 (688)
++|+|||+|..|.+.|+.|+..|+ +|+++|...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 579999999999999999999887 899999844
No 379
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.00 E-value=0.38 Score=51.02 Aligned_cols=33 Identities=27% Similarity=0.533 Sum_probs=29.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCC--CcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLG--FRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G--~~V~VLEa~~ 80 (688)
++|+|||+|..|.++|+.|+..| .+|.++|.+.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 36999999999999999999999 4799999854
No 380
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=89.95 E-value=0.41 Score=52.20 Aligned_cols=33 Identities=36% Similarity=0.453 Sum_probs=30.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
.+|+|||+|..|+.+|..|...|.+|++++.+.
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 679999999999999999999999999999743
No 381
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=89.94 E-value=0.47 Score=51.53 Aligned_cols=45 Identities=33% Similarity=0.538 Sum_probs=37.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCC-CcEEEEecC--------CCCcceeeeeecC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLG-FRVTVLEGR--------KRAGGRVYTKKME 92 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G-~~V~VLEa~--------~rvGGr~~S~~~~ 92 (688)
++|+|||||--|.++|+.|++.| .+|+|-+++ ...++++.+...+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD 55 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVD 55 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEec
Confidence 68999999999999999999999 899999997 4445555554443
No 382
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=89.92 E-value=0.4 Score=50.03 Aligned_cols=33 Identities=30% Similarity=0.450 Sum_probs=30.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
.+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 689999999999999999999999999999854
No 383
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.82 E-value=0.38 Score=54.11 Aligned_cols=33 Identities=27% Similarity=0.585 Sum_probs=31.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
.+|.|+|.|.+|+++|..|.+.|++|++.|.++
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 579999999999999999999999999999765
No 384
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=89.80 E-value=0.36 Score=50.78 Aligned_cols=33 Identities=27% Similarity=0.515 Sum_probs=30.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
.+|.|||+|.-|...|..|+++|++|+++|.++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 579999999999999999999999999999744
No 385
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=89.72 E-value=0.49 Score=46.93 Aligned_cols=33 Identities=24% Similarity=0.446 Sum_probs=30.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~ 79 (688)
..+|+|||||-.|...|..|.+.|.+|+|++..
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 378999999999999999999999999999754
No 386
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=89.70 E-value=0.41 Score=54.17 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=30.2
Q ss_pred CcEEEECccHHHHHHHHHHHHC---CCcEEEEecCCCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRL---GFRVTVLEGRKRA 82 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~---G~~V~VLEa~~rv 82 (688)
.+|+|||||..|+-.|..|... |.+|+|+|+.+++
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~i 225 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMI 225 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcc
Confidence 6799999999999999777654 9999999997764
No 387
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.69 E-value=0.4 Score=50.09 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=30.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
.+|+|||+|.-|.+.|..|+++|++|+++|.+.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 579999999999999999999999999998744
No 388
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=89.41 E-value=0.41 Score=53.07 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=31.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
++|.|||.|..|+..|..|+++|++|++++.+.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 679999999999999999999999999999755
No 389
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.31 E-value=0.49 Score=52.94 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=31.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~r 81 (688)
++|+|+|+|-+|+++|..|++.|++|++.|..+.
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 6799999999999999999999999999997654
No 390
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=89.22 E-value=0.54 Score=44.61 Aligned_cols=31 Identities=32% Similarity=0.366 Sum_probs=29.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEe
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLE 77 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLE 77 (688)
..+|+|||||-.|+.-|..|.+.|++|+|+.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 4789999999999999999999999999994
No 391
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=89.21 E-value=0.52 Score=46.63 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=30.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCC-cEEEEecC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGR 79 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~-~V~VLEa~ 79 (688)
+.+|+|||+|--|..+|..|++.|+ +++|+|..
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3789999999999999999999999 59999974
No 392
>PRK13748 putative mercuric reductase; Provisional
Probab=89.15 E-value=0.48 Score=54.74 Aligned_cols=32 Identities=38% Similarity=0.576 Sum_probs=30.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~ 79 (688)
.+|+|||||..|+-.|..|++.|.+|+|+++.
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 57999999999999999999999999999973
No 393
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.14 E-value=0.46 Score=53.89 Aligned_cols=32 Identities=44% Similarity=0.573 Sum_probs=30.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~ 79 (688)
.+|+|+|.|.+|++++..|.+.|.+|++.|.+
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 67999999999999999999999999999964
No 394
>PRK14694 putative mercuric reductase; Provisional
Probab=88.93 E-value=0.55 Score=52.95 Aligned_cols=40 Identities=8% Similarity=0.213 Sum_probs=32.7
Q ss_pred cCCcccCceEEEEEecCCeEEEEECCEEEEecEEEEcCCC
Q 005607 256 NVPILYEKTVHTIRYGSDGVQVLAGSQVFEGDMVLCTVPL 295 (688)
Q Consensus 256 ~l~I~lnt~V~~I~~~~~~v~V~~~g~~~~ad~VI~AvP~ 295 (688)
+++|++++.|++|+.+++.+.+.++++++.+|.||+++..
T Consensus 232 GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~ 271 (468)
T PRK14694 232 GIEVLKQTQASEVDYNGREFILETNAGTLRAEQLLVATGR 271 (468)
T ss_pred CCEEEeCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccCC
Confidence 6789999999999887776666665567999999998863
No 395
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=88.88 E-value=0.59 Score=49.22 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=30.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
.+|.|||+|.-|...|..|++.|++|+++|.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 569999999999999999999999999999754
No 396
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.80 E-value=0.62 Score=49.41 Aligned_cols=34 Identities=29% Similarity=0.338 Sum_probs=31.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
.++|.|||+|.-|.+.|..|+++|++|+++.++.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3689999999999999999999999999999754
No 397
>PRK14727 putative mercuric reductase; Provisional
Probab=88.75 E-value=0.54 Score=53.18 Aligned_cols=41 Identities=12% Similarity=0.265 Sum_probs=33.6
Q ss_pred HcCCcccCceEEEEEecCCeEEEEECCEEEEecEEEEcCCC
Q 005607 255 ENVPILYEKTVHTIRYGSDGVQVLAGSQVFEGDMVLCTVPL 295 (688)
Q Consensus 255 ~~l~I~lnt~V~~I~~~~~~v~V~~~g~~~~ad~VI~AvP~ 295 (688)
.+++|+++++|++|+.+++++.+..+++++.+|.||++++.
T Consensus 241 ~GV~i~~~~~V~~i~~~~~~~~v~~~~g~i~aD~VlvA~G~ 281 (479)
T PRK14727 241 EGIEVLNNTQASLVEHDDNGFVLTTGHGELRAEKLLISTGR 281 (479)
T ss_pred CCCEEEcCcEEEEEEEeCCEEEEEEcCCeEEeCEEEEccCC
Confidence 36789999999999987777777765557899999999874
No 398
>PTZ00052 thioredoxin reductase; Provisional
Probab=88.65 E-value=0.57 Score=53.26 Aligned_cols=31 Identities=42% Similarity=0.558 Sum_probs=29.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEec
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEG 78 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa 78 (688)
.+|+|||||..|+-.|..|++.|.+|+|+++
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~ 213 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVR 213 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEc
Confidence 4799999999999999999999999999986
No 399
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=88.63 E-value=0.44 Score=52.79 Aligned_cols=33 Identities=36% Similarity=0.527 Sum_probs=30.6
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 005607 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (688)
Q Consensus 49 dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~r 81 (688)
+|.|||.|..|+..|..|+++|++|++++.+..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 699999999999999999999999999998653
No 400
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.48 E-value=0.54 Score=52.62 Aligned_cols=33 Identities=45% Similarity=0.664 Sum_probs=30.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
..|+|+|+|-+|+++|..|++.|++|++.|.+.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 579999999999999999999999999999754
No 401
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.41 E-value=0.62 Score=49.42 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=30.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
.+|.|||+|.-|.+.|..|++.|++|++++.+.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 579999999999999999999999999999744
No 402
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=88.40 E-value=0.6 Score=49.71 Aligned_cols=33 Identities=36% Similarity=0.454 Sum_probs=30.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
++|.|||+|.-|...|..|++.|++|++++++.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 579999999999999999999999999998743
No 403
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=88.20 E-value=0.54 Score=53.28 Aligned_cols=31 Identities=35% Similarity=0.482 Sum_probs=29.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEec
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEG 78 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa 78 (688)
.+|+|||||..|+-.|..|++.|.+|+|+++
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~ 211 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVR 211 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEe
Confidence 5799999999999999999999999999986
No 404
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.86 E-value=0.54 Score=52.75 Aligned_cols=31 Identities=23% Similarity=0.420 Sum_probs=28.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~ 79 (688)
.+|+|+|.|.+|.+||..|.+ |.+|+|.|..
T Consensus 7 ~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 7 QKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 679999999999999999995 9999999954
No 405
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=87.82 E-value=0.63 Score=51.72 Aligned_cols=35 Identities=34% Similarity=0.505 Sum_probs=30.1
Q ss_pred CcEEEECccHHHHHHHHHHHH--------------CCCcEEEEecCCCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMR--------------LGFRVTVLEGRKRA 82 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k--------------~G~~V~VLEa~~rv 82 (688)
.+|+|||||.+|+-.|..|++ .|.+|+|+|+.+++
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l 222 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV 222 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc
Confidence 489999999999999999986 47889999987654
No 406
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.77 E-value=0.7 Score=49.44 Aligned_cols=33 Identities=36% Similarity=0.415 Sum_probs=30.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
++|.|||+|.-|.+-|..|+++|++|++++++.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 679999999999999999999999999998843
No 407
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=87.74 E-value=0.7 Score=44.01 Aligned_cols=33 Identities=36% Similarity=0.583 Sum_probs=28.9
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
++|.|||-|..|..-|..|.++|++|.+++++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 689999999999999999999999999999754
No 408
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=87.70 E-value=0.71 Score=52.16 Aligned_cols=34 Identities=47% Similarity=0.598 Sum_probs=30.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
..+|+|||+|..||.|+..+...|.+|+++|.++
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3789999999999999999999999999998754
No 409
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=87.52 E-value=0.57 Score=52.68 Aligned_cols=34 Identities=26% Similarity=0.509 Sum_probs=30.9
Q ss_pred CcEEEECccHHHHH-HHHHHHHCCCcEEEEecCCC
Q 005607 48 LRVLVIGAGLAGLA-AARQLMRLGFRVTVLEGRKR 81 (688)
Q Consensus 48 ~dVvIVGAGiaGLs-AA~~L~k~G~~V~VLEa~~r 81 (688)
++|.|||.|-+|++ +|..|.+.|++|++.|....
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 67999999999999 59999999999999998653
No 410
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=87.52 E-value=0.72 Score=51.84 Aligned_cols=34 Identities=44% Similarity=0.577 Sum_probs=30.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCC-cEEEEecCC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGRK 80 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~-~V~VLEa~~ 80 (688)
..+|+|||||..|+-+|..|.+.|. +|+|+++++
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 3689999999999999999999998 799999754
No 411
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=87.12 E-value=1.6 Score=47.57 Aligned_cols=57 Identities=14% Similarity=0.123 Sum_probs=42.6
Q ss_pred eeec-CCChHHHHHHHHH-----cCCcccCceEEEEEecCCeEEEEE--CCEEEEecEEEEcCCCCc
Q 005607 239 HCFL-PGGNGRLVQALVE-----NVPILYEKTVHTIRYGSDGVQVLA--GSQVFEGDMVLCTVPLGV 297 (688)
Q Consensus 239 ~~~~-~gG~~~L~~~L~~-----~l~I~lnt~V~~I~~~~~~v~V~~--~g~~~~ad~VI~AvP~~~ 297 (688)
.+|| ..-.+.++++|.. +++|+++++|++| +++++.+.+ ++..++||+||+|+.-..
T Consensus 77 rvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 77 RVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCcc
Confidence 3454 4567888888754 6789999999999 444577776 446799999999997543
No 412
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=86.93 E-value=1.4 Score=49.70 Aligned_cols=34 Identities=35% Similarity=0.509 Sum_probs=30.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCC-cEEEEecCC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGRK 80 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~-~V~VLEa~~ 80 (688)
..+|+|||+|..|+-+|..+.+.|. +|+|+++++
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 3789999999999999999999996 699999865
No 413
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.84 E-value=0.73 Score=52.38 Aligned_cols=33 Identities=45% Similarity=0.581 Sum_probs=30.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
.+|.|||.|.+|+++|..|.+.|++|++.|...
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 579999999999999999999999999999754
No 414
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=86.77 E-value=0.51 Score=49.59 Aligned_cols=33 Identities=42% Similarity=0.431 Sum_probs=28.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~ 79 (688)
.+||+|||||-||+-||.-|+--=-.|+|||=.
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~ 386 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFA 386 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhhhheeeeeecc
Confidence 479999999999999999998544469999953
No 415
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=86.77 E-value=0.91 Score=47.86 Aligned_cols=34 Identities=41% Similarity=0.522 Sum_probs=31.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
..+|+|||+|-.|+.+|..|...|.+|++++++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3789999999999999999999999999999864
No 416
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=86.72 E-value=0.97 Score=45.66 Aligned_cols=32 Identities=34% Similarity=0.720 Sum_probs=29.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCc---EEEEecC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFR---VTVLEGR 79 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~---V~VLEa~ 79 (688)
.+|+|+|||-+|..+|+.|.+.|.+ |.|++++
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 6899999999999999999999975 8888875
No 417
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=86.65 E-value=0.82 Score=54.81 Aligned_cols=33 Identities=36% Similarity=0.551 Sum_probs=30.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCc-EEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFR-VTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~-V~VLEa~~ 80 (688)
.+|||||||..|+-+|..|.+.|.+ |+|+++++
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 6899999999999999999999997 99999754
No 418
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.47 E-value=0.72 Score=49.49 Aligned_cols=46 Identities=30% Similarity=0.362 Sum_probs=42.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceeeeeecC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKME 92 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~S~~~~ 92 (688)
++||||||-|+.=-.-|...++.|.+|+=||.+..-||.-.|+.+.
T Consensus 8 ~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms 53 (547)
T KOG4405|consen 8 EFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMS 53 (547)
T ss_pred hccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeec
Confidence 4999999999999999999999999999999999999998888765
No 419
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=86.42 E-value=0.86 Score=48.69 Aligned_cols=31 Identities=26% Similarity=0.335 Sum_probs=29.2
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 005607 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (688)
Q Consensus 49 dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~ 79 (688)
+|.|||||--|.+-|..|+++|++|+++.++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 6999999999999999999999999999874
No 420
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=86.35 E-value=1 Score=44.54 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=30.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
+.|+|+|.|-.|..+|..|.+.|++|++.|.+.
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 689999999999999999999999999998753
No 421
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=86.32 E-value=0.84 Score=51.81 Aligned_cols=33 Identities=33% Similarity=0.440 Sum_probs=30.9
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
.+|.|||+|.-|-.-|..|+++|++|+|+|.+.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 579999999999999999999999999999864
No 422
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=86.26 E-value=1.3 Score=37.29 Aligned_cols=31 Identities=32% Similarity=0.445 Sum_probs=28.5
Q ss_pred CcEEEECccHHHHHHHHHHHHC-CCcEEEEec
Q 005607 48 LRVLVIGAGLAGLAAARQLMRL-GFRVTVLEG 78 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~-G~~V~VLEa 78 (688)
.+++|+|+|..|..+|..|.+. +.+|.++++
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 6799999999999999999998 578999987
No 423
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.23 E-value=0.86 Score=51.46 Aligned_cols=32 Identities=44% Similarity=0.572 Sum_probs=29.8
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~ 79 (688)
.+|.|+|.|-+|+++|..|.+.|.+|++.|..
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 56999999999999999999999999999964
No 424
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=86.00 E-value=0.88 Score=48.21 Aligned_cols=34 Identities=32% Similarity=0.614 Sum_probs=29.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~r 81 (688)
++|.|+|+|.-|...|+.|+++|.+|+++=+.++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 4799999999999999999999977887766553
No 425
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=85.85 E-value=1 Score=49.58 Aligned_cols=33 Identities=33% Similarity=0.306 Sum_probs=30.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
.+|+|+|+|..|+.+|..|...|.+|+|.|..+
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 689999999999999999999999999999754
No 426
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=85.82 E-value=1 Score=47.17 Aligned_cols=33 Identities=42% Similarity=0.633 Sum_probs=30.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCCC-cEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~-~V~VLEa~~ 80 (688)
.+|+|||+|-+|-++|+.|++.|. +|+|+++..
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 689999999999999999999998 699998753
No 427
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=85.74 E-value=0.94 Score=47.29 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=29.6
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 49 dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
+|.|||.|.-|.+-|..|.++|++|++++.+.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999998743
No 428
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=85.67 E-value=1.1 Score=47.70 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=31.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCC-cEEEEecCCC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGRKR 81 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~-~V~VLEa~~r 81 (688)
..+|+|||||-.|-+.|+.|+..|+ +|.|+|....
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 3689999999999999999999996 8999998654
No 429
>PRK06223 malate dehydrogenase; Reviewed
Probab=85.65 E-value=1.1 Score=47.51 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=30.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCC-cEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~-~V~VLEa~~ 80 (688)
++|+|||||..|.+.|+.|+..|+ +|.|+|...
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 689999999999999999999876 899999844
No 430
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=85.64 E-value=0.94 Score=51.52 Aligned_cols=34 Identities=32% Similarity=0.437 Sum_probs=31.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~r 81 (688)
.+|.|||+|.-|..-|..|+++|++|+|+|.+..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 5699999999999999999999999999997654
No 431
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=85.48 E-value=0.94 Score=50.92 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=29.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCC--CcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLG--FRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G--~~V~VLEa~~ 80 (688)
++|+|||+|..||..|..|++.| ++|+.+|...
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 67999999999999999999985 7799999744
No 432
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=85.46 E-value=1 Score=49.47 Aligned_cols=31 Identities=19% Similarity=0.378 Sum_probs=28.0
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 49 dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
+|.|||.|..|+..|..|+. |++|+++|.+.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~ 32 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILP 32 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCH
Confidence 69999999999999988875 99999999865
No 433
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=85.20 E-value=0.48 Score=51.84 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=29.5
Q ss_pred cCCcccCceEEEEEecCCeEEEEECCE-EEEecEEEEcCCCC
Q 005607 256 NVPILYEKTVHTIRYGSDGVQVLAGSQ-VFEGDMVLCTVPLG 296 (688)
Q Consensus 256 ~l~I~lnt~V~~I~~~~~~v~V~~~g~-~~~ad~VI~AvP~~ 296 (688)
|++|++++.|++|+.+ ++++. +|+ ++.++.||.|+...
T Consensus 223 GV~v~l~~~Vt~v~~~--~v~~~-~g~~~I~~~tvvWaaGv~ 261 (405)
T COG1252 223 GVEVLLGTPVTEVTPD--GVTLK-DGEEEIPADTVVWAAGVR 261 (405)
T ss_pred CCEEEcCCceEEECCC--cEEEc-cCCeeEecCEEEEcCCCc
Confidence 7899999999999754 44444 444 69999999998754
No 434
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=85.05 E-value=0.97 Score=51.34 Aligned_cols=33 Identities=24% Similarity=0.452 Sum_probs=30.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
++|.|||+|.-|..-|..|+++|++|+|++.+.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 479999999999999999999999999999854
No 435
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=85.00 E-value=1.6 Score=47.62 Aligned_cols=32 Identities=31% Similarity=0.503 Sum_probs=30.2
Q ss_pred CcEEEEC-ccHHHHHHHHHHHHCCCcEEEEecC
Q 005607 48 LRVLVIG-AGLAGLAAARQLMRLGFRVTVLEGR 79 (688)
Q Consensus 48 ~dVvIVG-AGiaGLsAA~~L~k~G~~V~VLEa~ 79 (688)
.+|+||| .|.-|-+.|..|.++|++|++++++
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 7899999 8999999999999999999999974
No 436
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=84.83 E-value=1.3 Score=46.53 Aligned_cols=33 Identities=36% Similarity=0.489 Sum_probs=31.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
.+|+|||+|-.|.+.|..|...|.+|+|++++.
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 789999999999999999999999999999864
No 437
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=84.74 E-value=0.91 Score=53.95 Aligned_cols=33 Identities=27% Similarity=0.309 Sum_probs=31.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
.+|+|||||.-|-.-|..++.+|++|+|+|.++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 579999999999999999999999999999864
No 438
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=84.62 E-value=1.5 Score=38.78 Aligned_cols=62 Identities=27% Similarity=0.348 Sum_probs=41.6
Q ss_pred EEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcceeeeeecCCCCCCCCceeeeccceeecCCCCcHHHHHHHHhCCce
Q 005607 50 VLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSLL 129 (688)
Q Consensus 50 VvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGGr~~S~~~~g~~g~~~~~~~D~G~~~~~~~~~~~l~~L~~~LGl~~ 129 (688)
|+|+|.|--|...|..|.+.+.+|+++|..... +.. .-+.|.+++.+...++ ..+++.++..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~---~~~-------------~~~~~~~~i~gd~~~~--~~l~~a~i~~ 62 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPER---VEE-------------LREEGVEVIYGDATDP--EVLERAGIEK 62 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHH---HHH-------------HHHTTSEEEES-TTSH--HHHHHTTGGC
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHH---HHH-------------HHhcccccccccchhh--hHHhhcCccc
Confidence 799999999999999999987799999996532 111 2233445565544332 3567777753
No 439
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=84.27 E-value=1.1 Score=41.21 Aligned_cols=32 Identities=41% Similarity=0.697 Sum_probs=29.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCC-cEEEEec
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGF-RVTVLEG 78 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~-~V~VLEa 78 (688)
+.+|+|||+|--|...|..|++.|+ +++|+|.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~ 34 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDD 34 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEES
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCC
Confidence 3789999999999999999999998 5999997
No 440
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.24 E-value=1.2 Score=49.46 Aligned_cols=33 Identities=33% Similarity=0.470 Sum_probs=30.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
.+|+|||-|.+|+++|..|.+.|++|++.|.+.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~ 36 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL 36 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 579999999999999999999999999999643
No 441
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=84.22 E-value=1.6 Score=40.49 Aligned_cols=33 Identities=27% Similarity=0.502 Sum_probs=29.3
Q ss_pred CcEEEECc-cHHHHHHHHHHHHCCC--cEEEEecCC
Q 005607 48 LRVLVIGA-GLAGLAAARQLMRLGF--RVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGA-GiaGLsAA~~L~k~G~--~V~VLEa~~ 80 (688)
++|+|||| |-.|-+.|+.|...++ ++.|+|...
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 47999999 9999999999999875 699999864
No 442
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.14 E-value=1.1 Score=50.35 Aligned_cols=32 Identities=38% Similarity=0.460 Sum_probs=29.8
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~ 79 (688)
.+|.|||.|-+|+++|..|.+.|++|++.|..
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~ 41 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAGGAEVIAWDDN 41 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEECCC
Confidence 57999999999999999999999999999954
No 443
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=84.05 E-value=18 Score=41.97 Aligned_cols=40 Identities=13% Similarity=0.072 Sum_probs=29.7
Q ss_pred cCCcccCceEEEEEec-CCeEE-EEE----CCE--EEEecEEEEcCCC
Q 005607 256 NVPILYEKTVHTIRYG-SDGVQ-VLA----GSQ--VFEGDMVLCTVPL 295 (688)
Q Consensus 256 ~l~I~lnt~V~~I~~~-~~~v~-V~~----~g~--~~~ad~VI~AvP~ 295 (688)
+++|+.++.++++..+ +++|. |.. +|+ .+.|+.||+|+.-
T Consensus 140 gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 187 (570)
T PRK05675 140 GTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGG 187 (570)
T ss_pred CCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCC
Confidence 6789999999999985 45554 221 443 5789999999964
No 444
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=84.01 E-value=1.4 Score=46.79 Aligned_cols=32 Identities=28% Similarity=0.478 Sum_probs=29.1
Q ss_pred cEEEECccHHHHHHHHHHHHCC--CcEEEEecCC
Q 005607 49 RVLVIGAGLAGLAAARQLMRLG--FRVTVLEGRK 80 (688)
Q Consensus 49 dVvIVGAGiaGLsAA~~L~k~G--~~V~VLEa~~ 80 (688)
+|+|||+|-.|.+.|+.|+..| .+|.|++...
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 6999999999999999999999 4799999854
No 445
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=83.94 E-value=1.2 Score=52.96 Aligned_cols=34 Identities=24% Similarity=0.263 Sum_probs=31.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
-.+|+|||||.-|-.-|..++.+|++|+++|.+.
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 3679999999999999999999999999999854
No 446
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=83.86 E-value=1.4 Score=49.71 Aligned_cols=33 Identities=48% Similarity=0.635 Sum_probs=30.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
.+|+|+|+|..|+.++..+...|.+|+++|.+.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 689999999999999999999999999998754
No 447
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.84 E-value=1.2 Score=49.89 Aligned_cols=33 Identities=33% Similarity=0.548 Sum_probs=30.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
--|+|||.|-+|+++|..|.+.|++|++.|..+
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 569999999999999999999999999999754
No 448
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=83.37 E-value=1.3 Score=46.72 Aligned_cols=32 Identities=31% Similarity=0.446 Sum_probs=30.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~ 79 (688)
.+|.|||||.-|-.-|+.++..|++|+++|.+
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 67999999999999999999988999999986
No 449
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=83.05 E-value=1.6 Score=43.84 Aligned_cols=31 Identities=23% Similarity=0.432 Sum_probs=27.9
Q ss_pred CcEEEEC-ccHHHHHHHHHHHHCCCcEEEEec
Q 005607 48 LRVLVIG-AGLAGLAAARQLMRLGFRVTVLEG 78 (688)
Q Consensus 48 ~dVvIVG-AGiaGLsAA~~L~k~G~~V~VLEa 78 (688)
++|.||| +|.-|.+.|..|++.|++|+++.+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r 32 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSR 32 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEc
Confidence 3699997 799999999999999999998865
No 450
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=83.05 E-value=1.7 Score=46.79 Aligned_cols=32 Identities=44% Similarity=0.704 Sum_probs=30.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCC-cEEEEec
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGF-RVTVLEG 78 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~-~V~VLEa 78 (688)
+.+|+|||+|--|-.+|..|++.|+ +++|+|.
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~ 56 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDR 56 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 3789999999999999999999999 7999998
No 451
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=83.05 E-value=1.6 Score=45.08 Aligned_cols=33 Identities=30% Similarity=0.454 Sum_probs=29.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCC-cEEEEecC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGR 79 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~-~V~VLEa~ 79 (688)
+.+|+|||+|-.|..+|..|++.|+ +++|+|..
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3789999999999999999999995 69999973
No 452
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=82.96 E-value=1.7 Score=45.19 Aligned_cols=33 Identities=36% Similarity=0.457 Sum_probs=30.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~ 79 (688)
..+|+|+|+|-+|.++|+.|++.|++|+|+.++
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~ 149 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRT 149 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 367999999999999999999999999999875
No 453
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=82.96 E-value=0.64 Score=49.59 Aligned_cols=37 Identities=43% Similarity=0.582 Sum_probs=34.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCCcc
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~rvGG 84 (688)
.+.+|||||+.||--+.--.+.|-+||++|..+.+||
T Consensus 212 k~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~ 248 (506)
T KOG1335|consen 212 KKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGG 248 (506)
T ss_pred ceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcc
Confidence 5799999999999999999999999999999998885
No 454
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=82.80 E-value=1.6 Score=46.82 Aligned_cols=32 Identities=38% Similarity=0.650 Sum_probs=29.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCC-cEEEEecC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGR 79 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~-~V~VLEa~ 79 (688)
.+|+|||+|--|..+|..|++.|+ +++|+|..
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 689999999999999999999998 69999973
No 455
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=82.71 E-value=1.5 Score=53.73 Aligned_cols=33 Identities=42% Similarity=0.552 Sum_probs=31.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
.+|||||||..|+-||..+.+.|.+|+++.+++
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 689999999999999999999999999998764
No 456
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=82.55 E-value=1.7 Score=47.72 Aligned_cols=34 Identities=32% Similarity=0.333 Sum_probs=31.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
...|+|||.|..|+.+|..|...|.+|+|+|...
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 3689999999999999999999999999999754
No 457
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.49 E-value=1.4 Score=48.67 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=27.9
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 005607 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (688)
Q Consensus 49 dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~ 79 (688)
+|.|||.|-+|+++|..|. .|.+|++.|..
T Consensus 2 ~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~ 31 (401)
T PRK03815 2 KISLFGYGKTTKALAKFLK-KFGGVDIFDDK 31 (401)
T ss_pred eEEEEeECHHHHHHHHHHh-CCCeEEEEcCC
Confidence 5899999999999999999 99999999953
No 458
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=82.46 E-value=1.3 Score=52.85 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=31.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
-.+|.|||||.-|-.-|+.++.+|++|+++|.++
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~ 368 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP 368 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence 3679999999999999999999999999999855
No 459
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=82.45 E-value=0.63 Score=50.38 Aligned_cols=74 Identities=16% Similarity=0.181 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHhhhhccccccchhccCCCCCCCCCCcEEEECccHHHHHHHHHHHH--------------CCCcEE
Q 005607 9 HCHSLLDSAYNYLVSNGYINFGVAPEIKEKIPVEPSSNKLRVLVIGAGLAGLAAARQLMR--------------LGFRVT 74 (688)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~in~g~~~~~~~~~p~~~~~~~~dVvIVGAGiaGLsAA~~L~k--------------~G~~V~ 74 (688)
+|.+.+--+.+-.-=+.-|=..+-.+..+..+.+..+..-.+||||||++|.-.|.+|+. .-++|+
T Consensus 180 e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vt 259 (491)
T KOG2495|consen 180 ENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVT 259 (491)
T ss_pred hchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEE
Q ss_pred EEecCCCC
Q 005607 75 VLEGRKRA 82 (688)
Q Consensus 75 VLEa~~rv 82 (688)
++||.+.+
T Consensus 260 LiEA~d~i 267 (491)
T KOG2495|consen 260 LIEAADHI 267 (491)
T ss_pred eeccchhH
No 460
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=82.43 E-value=1.3 Score=43.81 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=31.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 46 ~~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
+.+.|.|||||.-|...|..-+..|++|.|.+++.
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~ 44 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANE 44 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCH
Confidence 34789999999999999999999999999999855
No 461
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=82.27 E-value=2 Score=42.13 Aligned_cols=32 Identities=34% Similarity=0.439 Sum_probs=29.0
Q ss_pred CcEEEECc-cHHHHHHHHHHHHCCCcEEEEecC
Q 005607 48 LRVLVIGA-GLAGLAAARQLMRLGFRVTVLEGR 79 (688)
Q Consensus 48 ~dVvIVGA-GiaGLsAA~~L~k~G~~V~VLEa~ 79 (688)
.+|+|+|| |-.|..+|..|++.|.+|+++.++
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 68999997 999999999999999999999653
No 462
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.10 E-value=1.7 Score=48.57 Aligned_cols=33 Identities=30% Similarity=0.564 Sum_probs=30.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
++|.|||-|-+|++++..|.+.|++|++.|...
T Consensus 7 ~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~ 39 (438)
T PRK03806 7 KKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI 39 (438)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 679999999999999999999999999999754
No 463
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=82.07 E-value=2.1 Score=44.92 Aligned_cols=33 Identities=30% Similarity=0.328 Sum_probs=29.8
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCc-EEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFR-VTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~-V~VLEa~~ 80 (688)
..|+|+|||=+|.++|+.|++.|.+ |+|+.++.
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 6799999999999999999999997 99998753
No 464
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=82.05 E-value=1.4 Score=49.64 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=30.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~ 79 (688)
..+|+|||+|.+|+=.|..|++.+.+|+|+.++
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~ 236 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRA 236 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEee
Confidence 468999999999999999999999999998874
No 465
>PTZ00117 malate dehydrogenase; Provisional
Probab=82.01 E-value=2 Score=45.84 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=30.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCC-CcEEEEecCC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLG-FRVTVLEGRK 80 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G-~~V~VLEa~~ 80 (688)
+.+|+|||||-.|-+.|+.|+..| .++.|+|...
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 478999999999999999999998 5899999754
No 466
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=81.67 E-value=2.2 Score=42.29 Aligned_cols=32 Identities=34% Similarity=0.500 Sum_probs=29.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCC-cEEEEec
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGF-RVTVLEG 78 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~-~V~VLEa 78 (688)
+.+|+|||+|-.|..+|..|++.|. +++|+|.
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~ 53 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDD 53 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecC
Confidence 4789999999999999999999998 6999887
No 467
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=81.57 E-value=2.9 Score=44.39 Aligned_cols=44 Identities=25% Similarity=0.320 Sum_probs=34.0
Q ss_pred cCCcccCceEEEEEecCCeEEEEE----CC--EEEEecEEEEcCCCCccc
Q 005607 256 NVPILYEKTVHTIRYGSDGVQVLA----GS--QVFEGDMVLCTVPLGVLK 299 (688)
Q Consensus 256 ~l~I~lnt~V~~I~~~~~~v~V~~----~g--~~~~ad~VI~AvP~~~l~ 299 (688)
+++|+++++|++++.+++++++.. +| ++++||.||-|-..+...
T Consensus 125 gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~v 174 (356)
T PF01494_consen 125 GVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSKV 174 (356)
T ss_dssp TEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-HH
T ss_pred hhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccch
Confidence 678999999999999998877655 34 378999999998776543
No 468
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=81.57 E-value=1.8 Score=50.91 Aligned_cols=39 Identities=15% Similarity=0.237 Sum_probs=32.7
Q ss_pred CcEEEeecccccccCccchHHHHHHHHHHHHHHHHHhhhhh
Q 005607 454 GRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANARAL 494 (688)
Q Consensus 454 ~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l~~~~~ 494 (688)
++||.+||.... +..+..|+..|..||..|.+.+.++.+
T Consensus 467 pgVfA~GDv~~g--~~~v~~Ai~~G~~AA~~I~~~L~g~~~ 505 (652)
T PRK12814 467 AGVFAGGDCVTG--ADIAINAVEQGKRAAHAIDLFLNGKPV 505 (652)
T ss_pred CCEEEcCCcCCC--chHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 889999999863 456788999999999999999976543
No 469
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=81.49 E-value=2.3 Score=42.43 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=29.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCc-EEEEecC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFR-VTVLEGR 79 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~-V~VLEa~ 79 (688)
.+|+|||+|-.|...|..|++.|+. ++|+|..
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 7899999999999999999999985 9999973
No 470
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=81.48 E-value=1.9 Score=51.15 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=30.4
Q ss_pred CCcEEEECccHHHHHHHHHHH-HCCCcEEEEecCC
Q 005607 47 KLRVLVIGAGLAGLAAARQLM-RLGFRVTVLEGRK 80 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~-k~G~~V~VLEa~~ 80 (688)
-.+|+|||||.-|..-|..++ ++|++|+|+|.++
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~ 338 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKAGIPVRIKDINP 338 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 367999999999999999998 5899999999854
No 471
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=81.45 E-value=2.3 Score=39.65 Aligned_cols=33 Identities=33% Similarity=0.496 Sum_probs=29.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCC-CcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLG-FRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G-~~V~VLEa~~ 80 (688)
.+|+|||+|..|.+.|..|.+.| .+|++++++.
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 67999999999999999999996 7899998753
No 472
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=81.38 E-value=1.7 Score=45.83 Aligned_cols=31 Identities=29% Similarity=0.371 Sum_probs=28.3
Q ss_pred EEEECccHHHHHHHHHHHHCCC-cEEEEecCC
Q 005607 50 VLVIGAGLAGLAAARQLMRLGF-RVTVLEGRK 80 (688)
Q Consensus 50 VvIVGAGiaGLsAA~~L~k~G~-~V~VLEa~~ 80 (688)
|+|||||..|.+.|+.|+..|+ +|+|+|...
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 6899999999999999999887 999999864
No 473
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=81.28 E-value=1.7 Score=45.58 Aligned_cols=32 Identities=25% Similarity=0.405 Sum_probs=29.2
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 49 dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
+|.|||.|.-|...|..|++.|++|++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 48999999999999999999999999998753
No 474
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=81.19 E-value=2.4 Score=40.96 Aligned_cols=31 Identities=29% Similarity=0.329 Sum_probs=28.5
Q ss_pred cEEEECccHHHHHHHHHHHHCCCc-EEEEecC
Q 005607 49 RVLVIGAGLAGLAAARQLMRLGFR-VTVLEGR 79 (688)
Q Consensus 49 dVvIVGAGiaGLsAA~~L~k~G~~-V~VLEa~ 79 (688)
+|+|||+|-.|-..|..|++.|+. ++|+|..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 489999999999999999999995 9999973
No 475
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=80.84 E-value=1.7 Score=40.08 Aligned_cols=31 Identities=45% Similarity=0.656 Sum_probs=27.4
Q ss_pred EEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 50 VLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 50 VvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
++|+|||..+.+.|..+...|++|+|+|-+.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 5899999999999999999999999999864
No 476
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.74 E-value=42 Score=37.41 Aligned_cols=60 Identities=23% Similarity=0.292 Sum_probs=39.3
Q ss_pred HHHHHHHHhhhhccccccchhccCCCCCCCCCCcEEEECccHHHHHHHHHHHHCCCc--EEEEecCC
Q 005607 16 SAYNYLVSNGYINFGVAPEIKEKIPVEPSSNKLRVLVIGAGLAGLAAARQLMRLGFR--VTVLEGRK 80 (688)
Q Consensus 16 ~~~~~~~~~~~in~g~~~~~~~~~p~~~~~~~~dVvIVGAGiaGLsAA~~L~k~G~~--V~VLEa~~ 80 (688)
++++|-=+.+||+.-..+..-. ..+...+|+|||+|++=+=.=+.|..+|++ |+++-++.
T Consensus 170 ~~~~~~~~~~~ia~~~~~~~ld-----~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG 231 (474)
T COG4529 170 AARDLKGSPRLIADPYPANALD-----GVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG 231 (474)
T ss_pred hhhccCCCcceeccccCCcccc-----cccCCCceEEecCCchhHHHHHHHhccCCccceEEEeccc
Confidence 4556655555666444331111 112225699999999999999999999985 88887643
No 477
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=80.44 E-value=1.8 Score=51.41 Aligned_cols=34 Identities=26% Similarity=0.301 Sum_probs=30.7
Q ss_pred CCcEEEECccHHHHHHHHHHH-HCCCcEEEEecCC
Q 005607 47 KLRVLVIGAGLAGLAAARQLM-RLGFRVTVLEGRK 80 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~-k~G~~V~VLEa~~ 80 (688)
-.+|+|||||..|-.-|..++ ..|++|+++|.+.
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 367999999999999999999 8899999999854
No 478
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=80.41 E-value=2.5 Score=44.99 Aligned_cols=34 Identities=24% Similarity=0.469 Sum_probs=30.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCC--cEEEEecCC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGF--RVTVLEGRK 80 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~--~V~VLEa~~ 80 (688)
..+|+|||+|-.|-++|+.|+..|. ++.|+|...
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 3689999999999999999999987 799999743
No 479
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=80.37 E-value=2.1 Score=47.83 Aligned_cols=34 Identities=26% Similarity=0.511 Sum_probs=31.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~r 81 (688)
++|+|||+|-.|...|..|.+.|++|+++|++..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 3699999999999999999999999999998553
No 480
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=80.30 E-value=2.4 Score=42.53 Aligned_cols=31 Identities=32% Similarity=0.644 Sum_probs=28.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEe
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLE 77 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLE 77 (688)
..+|+|||||-.++-=+..|.+.|.+|+|+=
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVa 55 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYILS 55 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 4789999999999999999999999999993
No 481
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=80.30 E-value=2.6 Score=44.84 Aligned_cols=33 Identities=24% Similarity=0.491 Sum_probs=29.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCC--cEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGF--RVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~--~V~VLEa~~ 80 (688)
.+|+|||+|-.|-++|+.|+..|. ++.|+|...
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 689999999999999999999886 599999754
No 482
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=80.29 E-value=1.9 Score=48.03 Aligned_cols=32 Identities=38% Similarity=0.563 Sum_probs=29.5
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 49 dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
+|.|||.|-+|+++|..|.+.|++|++.|...
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~ 32 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKP 32 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCC
Confidence 47899999999999999999999999999754
No 483
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=80.28 E-value=2 Score=40.82 Aligned_cols=33 Identities=52% Similarity=0.564 Sum_probs=27.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
+.|+|+|=|..|-.+|..|...|.+|+|.|..+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 679999999999999999999999999999854
No 484
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=80.09 E-value=2.3 Score=48.03 Aligned_cols=38 Identities=13% Similarity=0.147 Sum_probs=31.8
Q ss_pred CcEEEeecccccccCccchHHHHHHHHHHHHHHHHHhhhh
Q 005607 454 GRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANARA 493 (688)
Q Consensus 454 ~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l~~~~ 493 (688)
++||.+||.+.. +..+..|+..|..||..|.+.+....
T Consensus 431 ~gVfa~GD~~~g--~~~~~~Av~~G~~AA~~i~~~L~g~~ 468 (471)
T PRK12810 431 PKVFAAGDMRRG--QSLVVWAIAEGRQAARAIDAYLMGST 468 (471)
T ss_pred CCEEEccccCCC--chhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 889999999873 34678899999999999999886543
No 485
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=79.83 E-value=2 Score=51.93 Aligned_cols=34 Identities=29% Similarity=0.361 Sum_probs=31.1
Q ss_pred CcEEEECccHHHHHH-HHHHHHCCCcEEEEecCCC
Q 005607 48 LRVLVIGAGLAGLAA-ARQLMRLGFRVTVLEGRKR 81 (688)
Q Consensus 48 ~dVvIVGAGiaGLsA-A~~L~k~G~~V~VLEa~~r 81 (688)
..|.|||.|-+|++| |..|.+.|++|++.|.+..
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~ 39 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEG 39 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCC
Confidence 469999999999999 9999999999999997653
No 486
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=79.74 E-value=2.4 Score=46.87 Aligned_cols=33 Identities=39% Similarity=0.408 Sum_probs=30.9
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
..|+|||.|..|..+|..|...|.+|+|.|..+
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 689999999999999999999999999999754
No 487
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=79.60 E-value=4.3 Score=47.90 Aligned_cols=36 Identities=14% Similarity=0.208 Sum_probs=31.2
Q ss_pred CcEEEeecccccccCccchHHHHHHHHHHHHHHHHHhh
Q 005607 454 GRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANA 491 (688)
Q Consensus 454 ~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l~~ 491 (688)
++||.+||.... +..+.-|+..|..||..|.+.|+.
T Consensus 618 ~gVfAaGD~~~g--~~~vv~Ai~~Gr~AA~~I~~~L~~ 653 (654)
T PRK12769 618 PKIFAGGDAVRG--ADLVVTAMAEGRHAAQGIIDWLGV 653 (654)
T ss_pred CCEEEcCCcCCC--CcHHHHHHHHHHHHHHHHHHHhCc
Confidence 889999999863 457789999999999999998864
No 488
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=79.38 E-value=38 Score=39.17 Aligned_cols=41 Identities=17% Similarity=0.048 Sum_probs=31.3
Q ss_pred cCCcccCceEEEEEecCCeEE-EEE----CC--EEEEecEEEEcCCCC
Q 005607 256 NVPILYEKTVHTIRYGSDGVQ-VLA----GS--QVFEGDMVLCTVPLG 296 (688)
Q Consensus 256 ~l~I~lnt~V~~I~~~~~~v~-V~~----~g--~~~~ad~VI~AvP~~ 296 (688)
+++|++++.++++..+++.|. |.. ++ ..+.|+.||+|+.-.
T Consensus 150 gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 197 (566)
T PRK06452 150 NVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGM 197 (566)
T ss_pred CCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCcc
Confidence 678999999999998877665 222 23 357899999999643
No 489
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=79.21 E-value=2.6 Score=47.72 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=30.9
Q ss_pred CcEEEeecccccccCccchHHHHHHHHHHHHHHHHHhhh
Q 005607 454 GRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANAR 492 (688)
Q Consensus 454 ~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l~~~ 492 (688)
++||.|||.+.. +..+.-|+..|..||..|.+.+...
T Consensus 445 ~gVfAaGD~~~g--~~~~~~Av~~G~~AA~~i~~~L~g~ 481 (485)
T TIGR01317 445 PGVFAAGDCRRG--QSLIVWAINEGRKAAAAVDRYLMGS 481 (485)
T ss_pred CCEEEeeccCCC--cHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 889999998763 4467779999999999999988643
No 490
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=79.08 E-value=2.8 Score=42.90 Aligned_cols=35 Identities=37% Similarity=0.497 Sum_probs=31.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~r 81 (688)
..+++|+|||.-+...|..+...|++|+|+|-++.
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 37899999999999999999999999999996543
No 491
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=79.01 E-value=2.8 Score=43.69 Aligned_cols=33 Identities=33% Similarity=0.511 Sum_probs=30.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCC-CcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLG-FRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G-~~V~VLEa~~ 80 (688)
.+|+|+|+|=+|.++|+.|.+.| .+|+|+.++.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~ 157 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTV 157 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 67999999999999999999999 6899998753
No 492
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=78.86 E-value=2.4 Score=44.63 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=30.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
.+|.|||.|.-|..-|..|+++|++|++++++.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 479999999999999999999999999998754
No 493
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=78.73 E-value=3 Score=38.56 Aligned_cols=31 Identities=35% Similarity=0.546 Sum_probs=28.4
Q ss_pred cEEEECccHHHHHHHHHHHHCCC-cEEEEecC
Q 005607 49 RVLVIGAGLAGLAAARQLMRLGF-RVTVLEGR 79 (688)
Q Consensus 49 dVvIVGAGiaGLsAA~~L~k~G~-~V~VLEa~ 79 (688)
+|+|||+|-.|...|..|++.|+ +++|+|..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 48999999999999999999998 59999974
No 494
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=78.51 E-value=3.2 Score=42.33 Aligned_cols=32 Identities=38% Similarity=0.512 Sum_probs=29.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCC-cEEEEec
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGF-RVTVLEG 78 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~-~V~VLEa 78 (688)
..+|+|||+|-.|..+|..|++.|. +++|+|.
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~ 56 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDF 56 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeC
Confidence 3789999999999999999999997 4888887
No 495
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=78.45 E-value=2.7 Score=44.17 Aligned_cols=33 Identities=24% Similarity=0.583 Sum_probs=30.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
++|.|||.|..|...|..|++.|++|++++++.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~ 35 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP 35 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 579999999999999999999999999998743
No 496
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=78.32 E-value=1.1e+02 Score=33.27 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=32.3
Q ss_pred cCCcccCceEEEEEec-CCeEEEEE-CCEEEEecEEEEcCCCCc
Q 005607 256 NVPILYEKTVHTIRYG-SDGVQVLA-GSQVFEGDMVLCTVPLGV 297 (688)
Q Consensus 256 ~l~I~lnt~V~~I~~~-~~~v~V~~-~g~~~~ad~VI~AvP~~~ 297 (688)
+++++ .+.|+.+..+ ++.+.|++ +|++++|+.||.|.+...
T Consensus 99 gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 99 GVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred CcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 45564 6689999877 56677777 677999999999998765
No 497
>PLN02494 adenosylhomocysteinase
Probab=78.16 E-value=3 Score=46.43 Aligned_cols=34 Identities=26% Similarity=0.243 Sum_probs=31.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~~V~VLEa~~ 80 (688)
...|+|||.|..|..+|..|...|.+|+++|..+
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp 287 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDP 287 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3789999999999999999999999999999754
No 498
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=77.75 E-value=3.2 Score=42.50 Aligned_cols=32 Identities=38% Similarity=0.497 Sum_probs=29.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCC-cEEEEec
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGF-RVTVLEG 78 (688)
Q Consensus 47 ~~dVvIVGAGiaGLsAA~~L~k~G~-~V~VLEa 78 (688)
+.+|+|||+|--|..+|..|+..|+ +++|+|.
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~ 64 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDF 64 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 3789999999999999999999997 5888886
No 499
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=77.36 E-value=3.4 Score=43.27 Aligned_cols=32 Identities=44% Similarity=0.555 Sum_probs=29.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCC-cEEEEecC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGR 79 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~-~V~VLEa~ 79 (688)
.+|+|||||=+|-++|+.|.+.|. +|+|+.++
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt 158 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRN 158 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 679999999999999999999997 59999775
No 500
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=77.34 E-value=3.3 Score=45.04 Aligned_cols=32 Identities=31% Similarity=0.583 Sum_probs=29.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCC---cEEEEecC
Q 005607 48 LRVLVIGAGLAGLAAARQLMRLGF---RVTVLEGR 79 (688)
Q Consensus 48 ~dVvIVGAGiaGLsAA~~L~k~G~---~V~VLEa~ 79 (688)
.+|+|.|||-||+++|..|...|. +|.++|+.
T Consensus 200 ~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~ 234 (432)
T COG0281 200 QKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRK 234 (432)
T ss_pred eEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecC
Confidence 789999999999999999999998 58888874
Done!