Query 005607
Match_columns 688
No_of_seqs 236 out of 2316
Neff 8.1
Searched_HMMs 29240
Date Tue Mar 26 18:17:57 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005607.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2112-2115//hhsearch_pdb/005607hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xag_A Lysine-specific histone 1.0 1 1 438.8 44.8 467 11-493 246-833 (852)
2 2z3y_A Lysine-specific histone 1.0 1 1 433.8 46.5 464 12-491 76-660 (662)
3 4gut_A Lysine-specific histone 1.0 1 1 428.7 43.1 470 8-487 297-775 (776)
4 1s3e_A Amine oxidase [flavin-c 1.0 1 1 383.9 41.5 442 46-510 3-474 (520)
5 1rsg_A FMS1 protein; FAD bindi 1.0 1 1 382.0 40.2 430 47-493 8-511 (516)
6 2vvm_A Monoamine oxidase N; FA 1.0 1 1 354.7 34.6 416 46-493 38-489 (495)
7 2yg5_A Putrescine oxidase; oxi 1.0 1 1 354.4 31.7 419 47-490 5-452 (453)
8 1b37_A Protein (polyamine oxid 1.0 1 1 353.9 39.5 433 46-493 3-462 (472)
9 2iid_A L-amino-acid oxidase; f 1.0 1 1 336.2 39.1 422 46-491 32-486 (498)
10 3k7m_X 6-hydroxy-L-nicotine ox 1.0 1 1 329.0 35.4 404 47-490 1-427 (431)
No 1
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=1.00 E-value=1 Score=438.78 Aligned_cols=467 Identities=44% Similarity=0.756 Sum_probs=354.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEE
Q ss_conf 87899999999771010025531100149999999999379997628899999999979996899925999731011023
Q 005607 11 HSLLDSAYNYLVSNGYINFGVAPEIKEKIPVEPSSNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKK 90 (688)
Q Consensus 11 ~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~dVvIIGAGiaGLsAA~~L~k~G~~V~VlE~~~~~GGr~~s~~ 90 (688)
...|..+..|+..+++||+|..+... ..+....++|+|||||++||+||+.|++.|++|+|||+++++||++.+++
T Consensus 246 p~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~ 321 (852)
T 2xag_A 246 TVLVHRVHSYLERHGLINFGIYKRIK----PLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFR 321 (852)
T ss_dssp HHHHHHHHHHHHHTTSSSCSSCBCSS----CCCSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCEEE
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCC----CCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEC
T ss_conf 27999999999988988448555667----76657787089989878999999999977995899970476787233312
Q ss_pred CCCCCCCCCCEEEECCCEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 29998887760550145053299995999999982996655508821781599321913558999999999999999999
Q 005607 91 MEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSLLHKVRDKCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLRQ 170 (688)
Q Consensus 91 ~~g~~g~~~~~~~d~G~~~i~~~~~~~l~~l~~~lGl~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ll~~~~~~~~ 170 (688)
..+. .+|+|++++++..++++..+.+++|+....+...+.++..+|..++..........+..++.....+..
T Consensus 322 ~~~~-------~~~~G~~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~~~~~~l~~ 394 (852)
T 2xag_A 322 KGNY-------VADLGAMVVTGLGGNPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSH 394 (852)
T ss_dssp ETTE-------EEESSCCEECCSBTCHHHHHHHHTTCCEEECCCCCCEECTTSCBCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC-------CHHCCCEEECCCCCCHHHHHHHHHCCCHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5663-------120383486377885699999980972110256615995589556601222334554216778999863
Q ss_pred HHHC---CCCCCCHHH----------------------------------------------------------------
Q ss_conf 8400---136999889----------------------------------------------------------------
Q 005607 171 LMGE---VAMDVSLGS---------------------------------------------------------------- 183 (688)
Q Consensus 171 ~~~~---~~~~~s~~~---------------------------------------------------------------- 183 (688)
.... ...+.+++.
T Consensus 395 ~~~~~~~~~~~~slg~~~e~v~~~~er~~~~e~l~~~~~i~~~~~~i~~~~~~l~~~~~~l~~l~~~~~~~~~~~~p~~~ 474 (852)
T 2xag_A 395 QLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRDI 474 (852)
T ss_dssp TSCCCEETTEECBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCH
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 00110136787548888777666655302246777766566665432225888877677899999987654213565430
Q ss_pred ---------------HHHHHHHH--------------HCC-----CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
Q ss_conf ---------------99999999--------------426-----89999999999999831101343024567874125
Q 005607 184 ---------------ALETFWRV--------------YWD-----SGNAEAMNLFNWHLANLEYANASLLSKLSLAFWDQ 229 (688)
Q Consensus 184 ---------------~l~~~~~~--------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 229 (688)
.+..+..+ ... ..+...+.++.|+..++++.++..+..+++..|.+
T Consensus 475 ~~e~s~rs~~~~l~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~~~~ls~~~~~~l~~~~~~~e~~~~~~l~~lSl~~~~~ 554 (852)
T 2xag_A 475 TAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQ 554 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHSCCCSCSSCTTHHHHHHHHHHHHHHHHTSCTTTBBTTTTTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 13333321025699999987654455566889887640257521237888999999987410103568767632566532
Q ss_pred CCCCCCCCCEEECCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEE-C------CEEEEECEEEECCCCCCCCC--
Q ss_conf 89988899805608975899999987089314815889996499089998-9------97999369999279871017--
Q 005607 230 DDPYDMGGDHCFLPGGNGRLVQALVENVPILYEKTVHTIRYGSDGVQVLA-G------SQVFEGDMVLCTVPLGVLKS-- 300 (688)
Q Consensus 230 ~~~~~~~g~~~~~~GG~~~L~~aL~~~i~I~~n~~V~~I~~~~~~v~V~t-~------G~~i~AD~VI~AvP~~~l~~-- 300 (688)
...++..+.++.++||++.|+++|+++++|++|++|++|.+++++|+|++ + +++++||+||+|+|+.++++
T Consensus 555 ~~~~~~~g~~~~~~gG~~~L~~aLa~~l~I~Lnt~V~~I~~~~~gV~V~~~~~~~~~~g~~i~AD~VIvTvPl~vLk~l~ 634 (852)
T 2xag_A 555 DDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQP 634 (852)
T ss_dssp GGGGCCBSCCEEETTCTTHHHHHHTTTCCEECSEEEEEEEEETTEEEEEEEESSSTTCEEEEEESEEEECCCHHHHHCSS
T ss_pred CCCCCCCCCEEEECCCHHHHHHHHHHCCCEEECCEEEEEEECCCCEEEEEEECCCCCCCEEEECCEEEECCCHHHHHHHH
T ss_conf 00101377358863828899999984797882883899998699679999514668887088889999889989987652
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCEEEEEECCCCCCCCEEEEEECCHH
Q ss_conf 75113799979999999823986324999994876645688972133339999972499851332589758999934515
Q 005607 301 GSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEA 380 (688)
Q Consensus 301 ~~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f~~~~w~~~~~~~g~l~~~~~~~~~~~~~~~~~~p~g~~ll~~yv~g~~ 380 (688)
..|.|.|.||..+.+++++++|+++.||++.|+++||..+...||++......++..+.+|+.. +.+++++|+.|..
T Consensus 635 ~~I~F~P~LP~~k~~AI~~l~~g~v~KV~L~F~~~fW~~~~~~fG~l~~~~~~~~~l~~~~~~~---~~pvLl~~v~G~~ 711 (852)
T 2xag_A 635 PAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLY---KAPILLALVAGEA 711 (852)
T ss_dssp CSSEEESCCCHHHHHHHHHSEECCCEEEEEECSSCCSCTTCCEEEECCSSSTTTTTTCEEEECS---SSSEEEEEECHHH
T ss_pred CCCCCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCEEEEECCC---CCCEEEEEECCCC
T ss_conf 1356689899999999982796450899997677566788881565346667787227985489---9988999956847
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCC--------
Q ss_conf 576219996899999999998650999998888842899327999999762678889999651788752259--------
Q 005607 381 AHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVG-------- 452 (688)
Q Consensus 381 a~~~~~ls~eel~~~vl~~L~~if~~~~~~v~~p~~~~~~rW~~~p~~~Gay~~~~pG~~~~~~~~l~~pv~-------- 452 (688)
+..+..++++++++.++++|+++|+.. ..++|..+.+++|..+||+.|+|+++.||+...+++.+.+|+.
T Consensus 712 a~~l~~lsdeel~~~~l~~L~~ifG~~--~~~~P~~~~vtrW~~dp~s~GsYs~~~pG~~~~~~~~L~~P~~~~~~~p~~ 789 (852)
T 2xag_A 712 AGIMENISDDVIVGRCLAILKGIFGSS--AVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGA 789 (852)
T ss_dssp HHHGGGSCHHHHHHHHHHHHHHHHCTT--TCCCCSEEEECCTTTCTTTSSSCEECBTTCCTTHHHHTTSCBCCCCSSTTC
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHCCC--CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCC
T ss_conf 797861999999999999999984752--348852799975698987686444557986333579884755555555322
Q ss_pred ---CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---99399930233363573115889999999999999985422
Q 005607 453 ---DGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANARA 493 (688)
Q Consensus 453 ---~~~LyfAGd~~~~~~~g~veGAi~SG~~aA~~Il~~l~~~~ 493 (688)
.+||||||++++..|.||||||+.||.+||.+|++.+....
T Consensus 790 ~~~~grL~FAGE~Ts~~~~gtveGAi~SG~RAA~~Il~~l~~~~ 833 (852)
T 2xag_A 790 PQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFLGAM 833 (852)
T ss_dssp CCCCCCEEECSGGGCTTSTTSHHHHHHHHHHHHHHHHHHHHCCG
T ss_pred CCCCCCEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 57888199984567288873889999999999999999853787
No 2
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=1.00 E-value=1 Score=433.79 Aligned_cols=464 Identities=44% Similarity=0.757 Sum_probs=359.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEC
Q ss_conf 78999999997710100255311001499999999993799976288999999999799968999259997310110232
Q 005607 12 SLLDSAYNYLVSNGYINFGVAPEIKEKIPVEPSSNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKM 91 (688)
Q Consensus 12 ~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~dVvIIGAGiaGLsAA~~L~k~G~~V~VlE~~~~~GGr~~s~~~ 91 (688)
..|..+..|+..+++||.|..+... ++ .....++|+|||||++||+||+.|.+.|++|+|+|+++++||++.+.+.
T Consensus 76 ~~i~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~ 151 (662)
T 2z3y_A 76 VLVHRVHSYLERHGLINFGIYKRIK--PL--PTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRK 151 (662)
T ss_dssp HHHHHHHHHHHHTTSSSCSSCBCSS--CC--CSSCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCC--CC--CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 9999999999888998469744457--77--6567971899896799999999999779959999657888885123255
Q ss_pred CCCCCCCCCEEEECCCEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH---
Q ss_conf 99988877605501450532999959999999829966555088217815993219135589999999999999999---
Q 005607 92 EGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSLLHKVRDKCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRL--- 168 (688)
Q Consensus 92 ~g~~g~~~~~~~d~G~~~i~~~~~~~l~~l~~~lGl~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ll~~~~~~--- 168 (688)
.+. .+|+|++++++..++++..+.++++++...+.....++..+|..++..........+..++.....+
T Consensus 152 ~~~-------~~~~G~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 224 (662)
T 2z3y_A 152 GNY-------VADLGAMVVTGLGGNPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQ 224 (662)
T ss_dssp TTE-------EEESSCCEECCSBTCHHHHHHHHHTCCEEECCSCCCEECTTSCBCCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCC-------HHHCCCEEEECCCCCHHHHHHHHHCCCHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 676-------5340868991788846999999828620013666529967896887415556568998999999999723
Q ss_pred --------------------------------------------------------HHHHHCCCCCC-------------
Q ss_conf --------------------------------------------------------99840013699-------------
Q 005607 169 --------------------------------------------------------RQLMGEVAMDV------------- 179 (688)
Q Consensus 169 --------------------------------------------------------~~~~~~~~~~~------------- 179 (688)
...+..+....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~ 304 (662)
T 2z3y_A 225 LDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRDIT 304 (662)
T ss_dssp SCCCEETTEECBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCC--------CCT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 45544478998889999999876654312334455544555544322113321001456887755444332025665531
Q ss_pred --------------CHHHHHH----------HHHHHHCC-----CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
Q ss_conf --------------9889999----------99999426-----899999999999998311013430245678741258
Q 005607 180 --------------SLGSALE----------TFWRVYWD-----SGNAEAMNLFNWHLANLEYANASLLSKLSLAFWDQD 230 (688)
Q Consensus 180 --------------s~~~~l~----------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 230 (688)
.+..+.. .+...... ..+...+.++.|+..++++.++..+..+++..|.+.
T Consensus 305 ~~~s~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ls~~~~~~~ 384 (662)
T 2z3y_A 305 AEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQD 384 (662)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHTHHHHHHHHHHHHHTTSCCCSCSSCHHHHHHHHHHHHHHHHHTTSCGGGBBTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHCCCC
T ss_conf 13443103456888874321110044557889987640576322246778899999999888732789566587446878
Q ss_pred CCCCCCCCEEECCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEE-C------CEEEEECEEEECCCCCCCCC--C
Q ss_conf 9988899805608975899999987089314815889996499089998-9------97999369999279871017--7
Q 005607 231 DPYDMGGDHCFLPGGNGRLVQALVENVPILYEKTVHTIRYGSDGVQVLA-G------SQVFEGDMVLCTVPLGVLKS--G 301 (688)
Q Consensus 231 ~~~~~~g~~~~~~GG~~~L~~aL~~~i~I~~n~~V~~I~~~~~~v~V~t-~------G~~i~AD~VI~AvP~~~l~~--~ 301 (688)
..++..+.++.+.||++.|+++|+++++|++|++|++|+.++++|+|++ + +++++||+||+|+|+.++++ .
T Consensus 385 ~~~~~~g~~~~~~gG~~~l~~~La~~l~I~l~~~V~~I~~~~~~v~V~~~~~~~~~~~~~~~Ad~VI~tvP~~vL~~l~~ 464 (662)
T 2z3y_A 385 DDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPP 464 (662)
T ss_dssp GGGCCBSCCEEETTCTTHHHHHHTTTCEEETTEEEEEEEEETTEEEEEEEESSCTTCEEEEEESEEEECCCHHHHHCSSC
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHCCCEECCCEEEEEEECCCCEEEEEEECCCCCCCEEEEECEEEECCCHHHHHCCCC
T ss_conf 65355786444138677999999716956569868999978994899983145578870899098998799789840568
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCEEEEEECCCCCCCCEEEEEECCHHH
Q ss_conf 51137999799999998239863249999948766456889721333399999724998513325897589999345155
Q 005607 302 SIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAA 381 (688)
Q Consensus 302 ~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f~~~~w~~~~~~~g~l~~~~~~~~~~~~~~~~~~p~g~~ll~~yv~g~~a 381 (688)
.|.|.|+||+.+.+++++++|+++.||++.|+++||..+...||.+......++..+.+|+.. +.+++++|+.|..+
T Consensus 465 ~i~f~P~LP~~k~~Ai~~l~~g~~~KV~l~f~~~fW~~~~~~~G~l~~~~~~~~~~~~~~~~~---~~~vL~~~~~G~~a 541 (662)
T 2z3y_A 465 AVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLY---KAPILLALVAGEAA 541 (662)
T ss_dssp SSEEESCCCHHHHHHHHHSEECCCEEEEEECSSCCSCTTCSEEEECCSSSTTTTEEEEEECCS---SSSEEEEEECTHHH
T ss_pred CEEECCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEEEECCCCCCCCCEEEEEECC---CCCEEEEEECCHHH
T ss_conf 657768999999999984886654699998676664678984335368777887326999679---99889999246758
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCC--------
Q ss_conf 762199968999999999986509999988888428993279999997626788899996517887522599--------
Q 005607 382 HKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGD-------- 453 (688)
Q Consensus 382 ~~~~~ls~eel~~~vl~~L~~if~~~~~~v~~p~~~~~~rW~~~p~~~Gay~~~~pG~~~~~~~~l~~pv~~-------- 453 (688)
..+..++++++++.++++|+++|+.. ..++|..+.+++|..+||+.|+|+++.||+...+++.+.+|+..
T Consensus 542 ~~~~~lsdee~~~~~l~~L~~~~g~~--~~~~p~~~~v~~W~~dp~~~Gsys~~~pg~~~~~~~~l~~p~~~~~~~~~~~ 619 (662)
T 2z3y_A 542 GIMENISDDVIVGRCLAILKGIFGSS--AVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAP 619 (662)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHCTT--SSCCCSEEEECCTTTCTTTSSSCEECBTTCCTHHHHHHHCCBCC--------
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHCCC--CCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCC
T ss_conf 99870999999999999999984874--4688764579898989998823666779986216899847476655443446
Q ss_pred ---CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---93999302333635731158899999999999999854
Q 005607 454 ---GRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANA 491 (688)
Q Consensus 454 ---~~LyfAGd~~~~~~~g~veGAi~SG~~aA~~Il~~l~~ 491 (688)
+||||||++++..|+||||||+.||.+||++|++.+.+
T Consensus 620 ~~~grl~FAGe~ts~~~~g~v~GAi~SG~raA~~i~~~~~g 660 (662)
T 2z3y_A 620 QPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFLG 660 (662)
T ss_dssp -CCCCEEECSGGGCTTSTTSHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 88882999960106888747899999999999999997169
No 3
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=1.00 E-value=1 Score=428.68 Aligned_cols=470 Identities=36% Similarity=0.655 Sum_probs=365.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEE
Q ss_conf 12287899999999771010025531100149999999999379997628899999999979996899925999731011
Q 005607 8 KHCHSLLDSAYNYLVSNGYINFGVAPEIKEKIPVEPSSNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (688)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~dVvIIGAGiaGLsAA~~L~k~G~~V~VlE~~~~~GGr~~ 87 (688)
..+...+..++.|+.+++++|.+.........+.......+||+|||||++||+||+.|++.|++|+|||+++++|||+.
T Consensus 297 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ggri~ 376 (776)
T 4gut_A 297 IRCVQEVERILYFMTRKGLINTGVLSVGADQYLLPKDYHNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGRVW 376 (776)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSCTTCCCCGGGCSSCGGGTSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTTCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCEECEEE
T ss_conf 56578999999999974234046120455455788778898089989789999999999987992899806653000021
Q ss_pred EEECCCCCCCCCCEEEECCCEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02329998887760550145053299995999999982996655508821781599321913558999999999999999
Q 005607 88 TKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSLLHKVRDKCPLYRLDGNSVDPEIDMKVEADFNRLLDKASR 167 (688)
Q Consensus 88 s~~~~g~~g~~~~~~~d~G~~~i~~~~~~~l~~l~~~lGl~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ll~~~~~ 167 (688)
|....++ ..+|+|++++++...+++..+++++|++.........++..++..............+..+++....
T Consensus 377 T~~~~~G------~~vd~Ga~~i~G~~~np~~~l~~~lGl~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~ll~~~~~ 450 (776)
T 4gut_A 377 DDKSFKG------VTVGRGAQIVNGCINNPVALMCEQLGISMHKFGERCDLIQEGGRITDPTIDKRMDFHFNALLDVVSE 450 (776)
T ss_dssp EECCSTT------CCEESSCCEEECCTTCHHHHHHHHHTCCCEECCSCCCEECTTSCBCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCC------EEECCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 0013698------2862677697477667699999982986210466662680598636455779999999999999999
Q ss_pred HHHHHHCCCCCCCHHHHHHH----HHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCC-CCCCCEEEC
Q ss_conf 99984001369998899999----9999426899999999999998311013430245678741258998-889980560
Q 005607 168 LRQLMGEVAMDVSLGSALET----FWRVYWDSGNAEAMNLFNWHLANLEYANASLLSKLSLAFWDQDDPY-DMGGDHCFL 242 (688)
Q Consensus 168 ~~~~~~~~~~~~s~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~g~~~~~ 242 (688)
+... .....+.++...+.. +....+..........+.+....++...+..+..++...+.....+ ..++....+
T Consensus 451 ~~~~-~~~~~d~sl~~~~~~~~~~~l~~~gv~~~~l~~~~l~~~~~~l~~~~G~~l~~ls~~~~~~~~~~~~~~G~~~~~ 529 (776)
T 4gut_A 451 WRKD-KTQLQDVPLGEKIEEIYKAFIKESGIQFSELEGQVLQFHLSNLEYACGSNLHQVSARSWDHNEFFAQFAGDHTLL 529 (776)
T ss_dssp HGGG-CCGGGCCBHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHTSCTTSBBTTTTTGGGGSCCCCSCEEEC
T ss_pred HHHC-CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 7412-333332557999999999998750777552467899999987877417896774923321245677458970787
Q ss_pred CCCHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEE-CCEEEEECEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 8975899999987089314815889996499089998-997999369999279871017751137999799999998239
Q 005607 243 PGGNGRLVQALVENVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLG 321 (688)
Q Consensus 243 ~GG~~~L~~aL~~~i~I~~n~~V~~I~~~~~~v~V~t-~G~~i~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~ 321 (688)
.+|++.++++|+++++|++|++|++|+.++++|+|++ +|+++.||+||+|+|+.++++..+.|.|.||+.+.++++.++
T Consensus 530 ~~G~~~l~~aLa~gl~I~l~t~V~~I~~~~~~v~V~~~~G~~i~Ad~VIvA~P~~vL~~~~i~f~P~Lp~~~~~ai~~l~ 609 (776)
T 4gut_A 530 TPGYSVIIEKLAEGLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLG 609 (776)
T ss_dssp TTCTHHHHHHHHTTSCEESSCCEEEEECSSSSEEEEETTCCEEEESEEEECCCHHHHHTTCSEEESCCCHHHHHHHHHEE
T ss_pred CCHHHHHHHHHHHCCCEECCCEEEEEEECCCEEEEEECCCCEEECCEEEECCCHHHHHHCCCCCCCCCCHHHHHHHHHCC
T ss_conf 87099999999837937728856799982997999978985899299998789999964422658777999999997189
Q ss_pred CCCEEEEEEECCCCCCCCC---CCCCEEEECCCCCCCCEEEEEECCCCCCCCEEEEEECCHHHHHHCCCCHHHHHHHHHH
Q ss_conf 8632499999487664568---8972133339999972499851332589758999934515576219996899999999
Q 005607 322 YGLLNKVAMLFPYVFWETD---LDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQ 398 (688)
Q Consensus 322 ~~~~~kV~l~f~~~~w~~~---~~~~g~l~~~~~~~~~~~~~~~~~~p~g~~ll~~yv~g~~a~~~~~ls~eel~~~vl~ 398 (688)
++++.||++.|+++||+.. ...++.+......++.+..+++.....+..+|++|+.|+.+..+..++++++++.+++
T Consensus 610 ~g~~~KV~l~f~~~FW~~~~~g~~~fG~l~~~~~~~~~~~~~~d~~p~g~~~vL~~~i~G~~a~~l~~lsdeel~~~~l~ 689 (776)
T 4gut_A 610 AGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMA 689 (776)
T ss_dssp EECCEEEEEECSSCTTHHHHTTCSEEEECCSSGGGTTEEEEEEESCTTSCSCEEEEEECTHHHHHHHTSCHHHHHHHHHH
T ss_pred CEEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCEEEEEEECCHHHHHHHCCCHHHHHHHHHH
T ss_conf 74689999965742224667777607751577677862799924789988628999844455788870999999999999
Q ss_pred HHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 99865099999888884289932799999976267888999965178875225999399930233363573115889999
Q 005607 399 ILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSG 478 (688)
Q Consensus 399 ~L~~if~~~~~~v~~p~~~~~~rW~~~p~~~Gay~~~~pG~~~~~~~~l~~pv~~~~LyfAGd~~~~~~~g~veGAi~SG 478 (688)
+|+++|+.. .+++|..+.+++|..+||+.|+|+++.||.....++.+.+|+. ++|||||++++..++||||||++||
T Consensus 690 ~L~~ifg~~--~~~~P~~~~vt~W~~dp~s~Gsys~~~~g~~~~~~~~L~~p~~-grL~FAGE~Ts~~~~gtveGAi~SG 766 (776)
T 4gut_A 690 TLRELFKEQ--EVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQ-GTVFFAGEATNRHFPQTVTGAYLSG 766 (776)
T ss_dssp HHHHHTTTS--CCCCCSEEEECCGGGCTTTCCSEEEEBTTCCTHHHHHHHCCBT-TTEEECSGGGCSSSCSSHHHHHHHH
T ss_pred HHHHHHCCC--CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC-CCEEEEEHHHCCCCCCCHHHHHHHH
T ss_conf 999984951--1267635998607999866877776689976567999857578-8499996321578984789999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q 005607 479 LRETAKMAH 487 (688)
Q Consensus 479 ~~aA~~Il~ 487 (688)
.+||++|++
T Consensus 767 ~RaA~~Ila 775 (776)
T 4gut_A 767 VREASKIAA 775 (776)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
T ss_conf 999999974
No 4
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=1.00 E-value=1 Score=383.91 Aligned_cols=442 Identities=22% Similarity=0.331 Sum_probs=317.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECC-CCCCCCCCEEEECCCEEECCCCCCHHHHHHHH
Q ss_conf 99937999762889999999997999689992599973101102329-99888776055014505329999599999998
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKME-GGAGNRISASADLGGSVLTGTLGNPLGILAKQ 124 (688)
Q Consensus 46 ~~~dVvIIGAGiaGLsAA~~L~k~G~~V~VlE~~~~~GGr~~s~~~~-g~~g~~~~~~~d~G~~~i~~~~~~~l~~l~~~ 124 (688)
+++||||||||++||+||+.|++.|++|+|||+++++|||+.|.+.. +. .+|+|++++.+. .+.+..++++
T Consensus 3 ~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~~~~g~-------~~d~G~~~~~~~-~~~~~~l~~~ 74 (520)
T 1s3e_A 3 NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVK-------YVDLGGSYVGPT-QNRILRLAKE 74 (520)
T ss_dssp CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEECCTTTS-------CEESSCCEECTT-CHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEECCCCCCC-------CCCCCCEEECCC-CHHHHHHHHH
T ss_conf 87609999977999999999997799789995788899925512468885-------122685486177-1799999998
Q ss_pred HCCCEEEECC-CCCEEECCCCCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHC--C--------CCCCCHHHHHHH
Q ss_conf 2996655508-821781599321913------5589999999999999999998400--1--------369998899999
Q 005607 125 LGSLLHKVRD-KCPLYRLDGNSVDPE------IDMKVEADFNRLLDKASRLRQLMGE--V--------AMDVSLGSALET 187 (688)
Q Consensus 125 lGl~~~~~~~-~~~~~~~~g~~~~~~------~~~~~~~~~~~ll~~~~~~~~~~~~--~--------~~~~s~~~~l~~ 187 (688)
+|++...... ...++..+|.....+ ........+..++....++...+.. . .++.++.+++..
T Consensus 75 lgl~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~ 154 (520)
T 1s3e_A 75 LGLETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDK 154 (520)
T ss_dssp TTCCEEECCCSSEEEEEETTEEEEECSSSCCCCSHHHHHHHHHHHHHHHHHHTTSCTTCGGGSTTHHHHHTSBHHHHHHH
T ss_pred CCCCCEECCCCCCEEEEECCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHHHH
T ss_conf 59962121468846999899798715778877887889999999999999986547688866515355613489999986
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC-C------CCCCCCCEEECCCCHHHHHHHHHH--CCC
Q ss_conf 9999426899999999999998311013430245678741258-9------988899805608975899999987--089
Q 005607 188 FWRVYWDSGNAEAMNLFNWHLANLEYANASLLSKLSLAFWDQD-D------PYDMGGDHCFLPGGNGRLVQALVE--NVP 258 (688)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~------~~~~~g~~~~~~GG~~~L~~aL~~--~i~ 258 (688)
. ..++....++.+............++......+... . ....++....+.||++.|+++|++ +.+
T Consensus 155 ---~---~~~~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~lg~~ 228 (520)
T 1s3e_A 155 ---L---CWTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLLGDR 228 (520)
T ss_dssp ---H---CSSHHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHTTTCHHHHHCSTTSTTSEEETTCTHHHHHHHHHHHGGG
T ss_pred ---H---CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCEEEEECCHHHHHHHHHHHCCCC
T ss_conf ---0---7998999999999751147996886789999997626865553045787636999087999999999875983
Q ss_pred CCCCCEEEEEEECCCEEEEEE-CCEEEEECEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCC
Q ss_conf 314815889996499089998-9979993699992798710177511379997999999982398632499999487664
Q 005607 259 ILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFW 337 (688)
Q Consensus 259 I~~n~~V~~I~~~~~~v~V~t-~G~~i~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f~~~~w 337 (688)
|++|++|++|+.++++|+|++ +|+++.||+||+|+|+.++.+ +.+.|.||..+.+++++++++++.|+++.|++++|
T Consensus 229 i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~--l~~~p~lp~~~~~~i~~~~~~~~~kv~l~~~~~~w 306 (520)
T 1s3e_A 229 VKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMK--IHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFW 306 (520)
T ss_dssp EESSCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGGGGGG--SEEESCCCHHHHHHTTSCCBCCEEEEEEECSSCGG
T ss_pred EECCCEEEEEEECCCEEEEEECCCEEEEECEEEECCCHHHHCC--EEECCCCCHHHHHHHHHCCCCCEEEEEEEECCCCC
T ss_conf 8828816999987983899978984999298998889799716--02389999899999982798625899999488764
Q ss_pred CCCCCCCEEEECCCCCCCCEEEEEECCCCCC-CCEEEEEECCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCE
Q ss_conf 5688972133339999972499851332589-758999934515576219996899999999998650999998888842
Q 005607 338 ETDLDTFGHLTDDSSSRGEFFLFYSYATVAG-GPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQ 416 (688)
Q Consensus 338 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~p~g-~~ll~~yv~g~~a~~~~~ls~eel~~~vl~~L~~if~~~~~~v~~p~~ 416 (688)
.... ..+.+..... ..+....++...+++ ..++++|+.+..+..|..++++++++.++++|+++|+.. .+..|.+
T Consensus 307 ~~~~-~~g~~~~~~~-~~~~~~~~d~~~~~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~vl~~L~~~~~~~--~~~~p~~ 382 (520)
T 1s3e_A 307 RKKD-YCGTMIIDGE-EAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSL--EALEPVH 382 (520)
T ss_dssp GGGT-EEEEEEECST-TCSCSEEEECCCTTSCSCEEEEEEETHHHHHHTTSCHHHHHHHHHHHHHHHHTCG--GGGCCSE
T ss_pred CCCC-CCCEEECCCC-CCCEEEEEECCCCCCCCCEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCC--CCCCCCE
T ss_conf 4788-7751512589-9736999627899999888999854565534543999999999999999970960--1588668
Q ss_pred EEEECCCCCCCCCCCCC-CCCCCCCCCCHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 89932799999976267-88899996517887522599939993023336357311588999999999999998542210
Q 005607 417 TVCTRWGGDPFSLGSYS-NVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANARALR 495 (688)
Q Consensus 417 ~~~~rW~~~p~~~Gay~-~~~pG~~~~~~~~l~~pv~~~~LyfAGd~~~~~~~g~veGAi~SG~~aA~~Il~~l~~~~~~ 495 (688)
+..++|..+||..|+|+ +..||+.....+.+++|+ +||||||++++..++||||||+.||.+||++|++.++. ..+
T Consensus 383 ~~~~~W~~~~~~~G~~~~~~~~g~~~~~~~~l~~p~--~~L~fAG~~t~~~~~g~v~GAi~SG~~aA~~i~~~l~~-~~~ 459 (520)
T 1s3e_A 383 YEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPV--DRIYFAGTETATHWSGYMEGAVEAGERAAREILHAMGK-IPE 459 (520)
T ss_dssp EEEEEGGGCTTTCSSSCBCCCTTHHHHHGGGTTCCB--TTEEECSGGGCSSSTTSHHHHHHHHHHHHHHHHHHTTS-SCG
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCC--CCEEEEEHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHC-CCC
T ss_conf 999760778888998755038985201068972888--87798203543767488378999999999999999733-764
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 011136789877210
Q 005607 496 MKVKVGKIPSKNAYS 510 (688)
Q Consensus 496 ~~~~~~~~~~~~~~~ 510 (688)
+.++..+|++.+..+
T Consensus 460 ~~~~~~~~~~~~~~~ 474 (520)
T 1s3e_A 460 DEIWQSEPESVDVPA 474 (520)
T ss_dssp GGSSCCCCCCSSSCC
T ss_pred CCCCCCCCCCCCCCC
T ss_conf 432345876566776
No 5
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=1.00 E-value=1 Score=382.01 Aligned_cols=430 Identities=25% Similarity=0.327 Sum_probs=294.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCCCCCEEEEEEC-CCCCCCCCCEEEECCCEEECCCCCCHHHHHHHH
Q ss_conf 993799976288999999999799-968999259997310110232-999888776055014505329999599999998
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLG-FRVTVLEGRKRAGGRVYTKKM-EGGAGNRISASADLGGSVLTGTLGNPLGILAKQ 124 (688)
Q Consensus 47 ~~dVvIIGAGiaGLsAA~~L~k~G-~~V~VlE~~~~~GGr~~s~~~-~g~~g~~~~~~~d~G~~~i~~~~~~~l~~l~~~ 124 (688)
.+||||||||+|||+||+.|+++| ++|+|||+++++|||+.|... .|. .+|+|++|+++...+++..++.+
T Consensus 8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~t~~~~~G~-------~~D~G~~~~~~~~~~~~~~~~~~ 80 (516)
T 1rsg_A 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGR-------KYDIGASWHHDTLTNPLFLEEAQ 80 (516)
T ss_dssp EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCCEEECGGGC-------EEESSCCEECCTTTCHHHHHHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEECCCCC-------EEECCCEEEECCCCCHHHHHHHH
T ss_conf 88689989788999999999866998889996789878813665548995-------78428868755788817999987
Q ss_pred HCCCE----EEECCCCC-EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-H--CCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 29966----55508821-78159932191355899999999999999999984-0--01369998899999999942689
Q 005607 125 LGSLL----HKVRDKCP-LYRLDGNSVDPEIDMKVEADFNRLLDKASRLRQLM-G--EVAMDVSLGSALETFWRVYWDSG 196 (688)
Q Consensus 125 lGl~~----~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~--~~~~~~s~~~~l~~~~~~~~~~~ 196 (688)
+++.. ........ .+..++.......... +..+++....+.... . ....+.++.+++..+........
T Consensus 81 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~l~~~l~~~~~~l 156 (516)
T 1rsg_A 81 LSLNDGRTRFVFDDDNFIYIDEERGRVDHDKELL----LEIVDNEMSKFAELEFHQHLGVSDCSFFQLVMKYLLQRRQFL 156 (516)
T ss_dssp HHHHHCCCCEECCCCCCEEEETTTEECTTCTTTC----HHHHHHHHHHHHHHHC-------CCBHHHHHHHHHHHHGGGS
T ss_pred HCCCCCCEEEEECCCCEEEECCCCCCCCCCHHHH----HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 0777756058977997798738876444107999----999999999999997530257789999999999998740236
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHCCC---CCCCCEEEEEEEC-C
Q ss_conf 99999999999983110134302456787412589988899805608975899999987089---3148158899964-9
Q 005607 197 NAEAMNLFNWHLANLEYANASLLSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQALVENVP---ILYEKTVHTIRYG-S 272 (688)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~~~~~~GG~~~L~~aL~~~i~---I~~n~~V~~I~~~-~ 272 (688)
.+.....+......+....+.....+++.+.... ..+...++.+ ++.++++|++.++ |++|++|++|..+ +
T Consensus 157 ~~~~~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~----~~~~~~~~~g-~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~ 231 (516)
T 1rsg_A 157 TNDQIRYLPQLCRYLELWHGLDWKLLSAKDTYFG----HQGRNAFALN-YDSVVQRIAQSFPQNWLKLSCEVKSITREPS 231 (516)
T ss_dssp CHHHHHHHHHHHGGGHHHHTBCTTTSBHHHHCCC----CSSCCEEESC-HHHHHHHHHTTSCGGGEETTCCEEEEEECTT
T ss_pred CHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHH----CCCCCHHHHC-HHHHHHHHHHHCCCCEEEECCEEEEEEECCC
T ss_conf 8889999999999999880899478781777763----4674413337-9999999997587878998998889997599
Q ss_pred CEEEEEE-CCEEEEECEEEECCCCCCCCCC---------CCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 9089998-9979993699992798710177---------51137999799999998239863249999948766456889
Q 005607 273 DGVQVLA-GSQVFEGDMVLCTVPLGVLKSG---------SIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLD 342 (688)
Q Consensus 273 ~~v~V~t-~G~~i~AD~VI~AvP~~~l~~~---------~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f~~~~w~~~~~ 342 (688)
++|.|++ +|++++||+||+|+|+.+++.. .+.|.|+||+.+.+++++++++++.||++.|+++||+.+..
T Consensus 232 ~~v~v~~~~g~~~~ad~VI~t~p~~~l~~~~~~~~~~~~~i~f~P~Lp~~~~~ai~~~~~~~~~Kv~l~f~~~fW~~~~~ 311 (516)
T 1rsg_A 232 KNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESS 311 (516)
T ss_dssp SCEEEEETTSCEEEEEEEEECCCHHHHHGGGSSCSCSTTCCEEESCCCHHHHHHTTSSCCCCCEEEEEEESSCCSCCSCS
T ss_pred CEEEEEECCCCEEECCEEEECCCHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCC
T ss_conf 75999988995999999998898778610434434555614766999989999887389785169999958877888878
Q ss_pred CCEEEECCCC---------C------------------C-CCE---EEEEECCCCCCCCEEEEEECCHHHHHHCCC--CH
Q ss_conf 7213333999---------9------------------9-724---998513325897589999345155762199--96
Q 005607 343 TFGHLTDDSS---------S------------------R-GEF---FLFYSYATVAGGPLLIALVAGEAAHKFESM--PP 389 (688)
Q Consensus 343 ~~g~l~~~~~---------~------------------~-~~~---~~~~~~~~p~g~~ll~~yv~g~~a~~~~~l--s~ 389 (688)
.+..+..... . + ..+ ..+.+...+.+.+++++|+.++.+..++.+ ++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~g~~a~~~~~l~~~~ 391 (516)
T 1rsg_A 312 KIVTLANSTNEFVEIVRNAENLDELDSMLEREDSQKHTSVTCWSQPLFFVNLSKSTGVASFMMLMQAPLTNHIESIREDK 391 (516)
T ss_dssp EEEECCCCCHHHHHHHHHCCSHHHHHHHC---------CCCTTSSCEEEEEHHHHTSCSEEEEEECBTHHHHHHHTTTCH
T ss_pred CEEEECCCCCCCHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCHHHHHHHHCCCCH
T ss_conf 37995788765201104676421012101223433334654356850699866517986799994306788887047887
Q ss_pred HHHHH---HHHHHHHHHCCCC----CCCCC-------CCC--EEEEECCCCCCCCCCCCCCCCCCCCCC-CHHHHHCCCC
Q ss_conf 89999---9999998650999----99888-------884--289932799999976267888999965-1788752259
Q 005607 390 TDAVT---KVLQILKGIYEPK----GINVP-------EPI--QTVCTRWGGDPFSLGSYSNVAVGASGD-DYDIMAESVG 452 (688)
Q Consensus 390 eel~~---~vl~~L~~if~~~----~~~v~-------~p~--~~~~~rW~~~p~~~Gay~~~~pG~~~~-~~~~l~~pv~ 452 (688)
+++++ .++++|.++|+.. ....+ .|. .+.+++|..+||+.|+|+++.||+... ....+.++..
T Consensus 392 ~~~~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~a~~p~~~~~~~~~W~~dp~~~Gsys~~~~g~~~~~~~~~l~~~~~ 471 (516)
T 1rsg_A 392 ERLFSFFQPVLNKIMKCLDSEDVIDGMRPIENIANANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVDMVVAMSNGQD 471 (516)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCEECCC-------CCSCEEEEEEECCTTTCTTTTTCCCCCBC----CHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
T ss_conf 99999999999998752045433357887532345679865607983688899878667776789887899998406887
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99399930233363573115889999999999999985422
Q 005607 453 DGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANARA 493 (688)
Q Consensus 453 ~~~LyfAGd~~~~~~~g~veGAi~SG~~aA~~Il~~l~~~~ 493 (688)
++|||||++++..++||||||++||.+||.+|++.+..+-
T Consensus 472 -~rl~FAGe~ts~~~~g~v~GA~~SG~raA~~i~~~~~~~~ 511 (516)
T 1rsg_A 472 -SRIRFAGEHTIMDGAGCAYGAWESGRREATRISDLLKLEH 511 (516)
T ss_dssp -SSEEECSTTSCSTTBTSHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred -CCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -7479700123567775320178889999999999866654
No 6
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=1.00 E-value=1 Score=354.67 Aligned_cols=416 Identities=18% Similarity=0.218 Sum_probs=287.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCEEEECCCEEECCCCCCHHHHHHHHH
Q ss_conf 99937999762889999999997999689992599973101102329998887760550145053299995999999982
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQL 125 (688)
Q Consensus 46 ~~~dVvIIGAGiaGLsAA~~L~k~G~~V~VlE~~~~~GGr~~s~~~~g~~g~~~~~~~d~G~~~i~~~~~~~l~~l~~~l 125 (688)
+.+||+|||||++||+||+.|++.|++|+|||+++++|||++|.+..|. .+|+|++++++.+. .+..+++++
T Consensus 38 ~~~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g~-------~~d~G~~~~~~~~~-~~~~~l~~l 109 (495)
T 2vvm_A 38 GPWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGY-------PYEMGGTWVHWHQS-HVWREITRY 109 (495)
T ss_dssp CCEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCCEEEETTE-------EEECSCCCBCTTSH-HHHHHHHHT
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEECCCCCE-------EECCCCEEECCCCH-HHHHHHHHC
T ss_conf 6788899997689999999998789978999578877872100355872-------22579728558558-999999984
Q ss_pred CC--CEEEEC---C-CCCEEECC--CCCCCHHHHHHHHHHHHHHHHHHHH-----HHHHHH-----------CCCCCCCH
Q ss_conf 99--665550---8-82178159--9321913558999999999999999-----999840-----------01369998
Q 005607 126 GS--LLHKVR---D-KCPLYRLD--GNSVDPEIDMKVEADFNRLLDKASR-----LRQLMG-----------EVAMDVSL 181 (688)
Q Consensus 126 Gl--~~~~~~---~-~~~~~~~~--g~~~~~~~~~~~~~~~~~ll~~~~~-----~~~~~~-----------~~~~~~s~ 181 (688)
|+ +..... . ...++..+ +.....+... ....+...+..... .+..+. ...++.++
T Consensus 110 gl~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 188 (495)
T 2vvm_A 110 KMHNALSPSFNFSRGVNHFQLRTNPTTSTYMTHEA-EDELLRSALHKFTNVDGTNGRTVLPFPHDMFYVPEFRKYDEMSY 188 (495)
T ss_dssp TCTTCEEESCCCSSSCCEEEEESSTTCCEEECHHH-HHHHHHHHHHHHHCSSSSTTTTTCSCTTSTTSSTTHHHHHTSBH
T ss_pred CCCCEEECCCCCCCCCEEEEECCCCCCEEECCHHH-HHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99530210355577751799527878413368788-89999999999970140334432788788556823344303119
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC-CC-CCC---CCCCCEEECCCCHHHHHHHHHHC
Q ss_conf 89999999994268999999999999983110134302456787412-58-998---88998056089758999999870
Q 005607 182 GSALETFWRVYWDSGNAEAMNLFNWHLANLEYANASLLSKLSLAFWD-QD-DPY---DMGGDHCFLPGGNGRLVQALVEN 256 (688)
Q Consensus 182 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~-~~~---~~~g~~~~~~GG~~~L~~aL~~~ 256 (688)
.+++... ....++..+.++.+............++......+. .. ..+ ......+.+.+|++.++++|.+.
T Consensus 189 ~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~ 264 (495)
T 2vvm_A 189 SERIDQI----RDELSLNERSSLEAFILLCSGGTLENSSFGEFLHWWAMSGYTYQGCMDCLMSYKFKDGQSAFARRFWEE 264 (495)
T ss_dssp HHHHHHH----GGGCCHHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHHTTSSHHHHHHHHHSEEETTCHHHHHHHHHHH
T ss_pred HHHHHHH----HCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCEEEECCCHHHHHHHHHHH
T ss_conf 9999986----154999999999999997428981130699999999976997888874322587679899999999997
Q ss_pred ------CCCCCCCEEEEEEECCCEEEEEE-CCEEEEECEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEE
Q ss_conf ------89314815889996499089998-99799936999927987101775113799979999999823986324999
Q 005607 257 ------VPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVA 329 (688)
Q Consensus 257 ------i~I~~n~~V~~I~~~~~~v~V~t-~G~~i~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~~kV~ 329 (688)
++|++|++|++|+.+++++.|++ +|++++||+||+|+|+.++.+ +.+.|.||+.+.++++.+.++++.||+
T Consensus 265 l~~~g~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~l~~--i~~~p~lp~~~~~ai~~~~~~~~~kv~ 342 (495)
T 2vvm_A 265 AAGTGRLGYVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNVLST--IQFSPALSTERISAMQAGHVSMCTKVH 342 (495)
T ss_dssp HHTTTCEEEESSCCEEEEEECSSSEEEEETTCCEEEEEEEEECCCGGGGGG--SEEESCCCHHHHHHHHHCCCCCCEEEE
T ss_pred HHHCCCEEEEECCEEEEEEECCCEEEEEECCCCEEECCEEEECCCHHHHHH--EEECCCCCHHHHHHHHHCCCCCEEEEE
T ss_conf 664386489948988999973998999988997999099998989787841--016899998999999835987504999
Q ss_pred EECCCCCCCCCCCCCEEEECCCCCCCCEEEEEECCCCCCCCEEEEEECCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99487664568897213333999997249985133258975899993451557621999689999999999865099999
Q 005607 330 MLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGI 409 (688)
Q Consensus 330 l~f~~~~w~~~~~~~g~l~~~~~~~~~~~~~~~~~~p~g~~ll~~yv~g~~a~~~~~ls~eel~~~vl~~L~~if~~~~~ 409 (688)
+.|++++|.. ..+..... ....+.+.+...|.+..++++|+... +. +++++.++.++++|+++++.
T Consensus 343 l~~~~~~~~~---~~g~~~~~---~~~~~~~~~~~~~~~~~vl~~~~~~~-~~----~~~~e~~~~~~~~L~~~~~~--- 408 (495)
T 2vvm_A 343 AEVDNKDMRS---WTGIAYPF---NKLCYAIGDGTTPAGNTHLVCFGNSA-NH----IQPDEDVRETLKAVGQLAPG--- 408 (495)
T ss_dssp EEESCGGGGG---EEEEECSS---CSSCEEEEEEECTTSCEEEEEEECST-TC----CCTTTCHHHHHHHHHTTSTT---
T ss_pred EEECCCCCCC---CEEEECCC---CCCEEEECCCCCCCCCEEEEEEECCC-CC----CCCHHHHHHHHHHHHHHCCC---
T ss_conf 9978745788---40675699---97079962788999974999991730-02----79778999999999986578---
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 88888428993279999997626788899996517887522599939993023336357311588999999999999998
Q 005607 410 NVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCA 489 (688)
Q Consensus 410 ~v~~p~~~~~~rW~~~p~~~Gay~~~~pG~~~~~~~~l~~pv~~~~LyfAGd~~~~~~~g~veGAi~SG~~aA~~Il~~l 489 (688)
.++|..+.+++|..+||+.|+|+.+.||+....++.+++|. +||||||++++..+++|||||+.||.+||++|++.+
T Consensus 409 -~~~~~~~~~~~W~~dp~~~g~y~~~~~g~~~~~~~~l~~p~--~~l~fAGe~t~~~~~g~veGAi~SG~raA~~i~~~l 485 (495)
T 2vvm_A 409 -TFGVKRLVFHNWVKDEFAKGAWFFSRPGMVSECLQGLREKH--GGVVFANSDWALGWRSFIDGAIEEGTRAARVVLEEL 485 (495)
T ss_dssp -SCCEEEEEECCTTTCTTTSSSSCCCCTTHHHHHHHHHHCCB--TTEEECCGGGCSSSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCC--CCEEEECHHHHCCCCEEEEHHHHHHHHHHHHHHHHH
T ss_conf -77760899847589988898756738995055689974867--977982235516786198849999999999999985
Q ss_pred HHHH
Q ss_conf 5422
Q 005607 490 NARA 493 (688)
Q Consensus 490 ~~~~ 493 (688)
+++.
T Consensus 486 ~~~~ 489 (495)
T 2vvm_A 486 GTKR 489 (495)
T ss_dssp CCC-
T ss_pred CCCC
T ss_conf 3556
No 7
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=1.00 E-value=1 Score=354.40 Aligned_cols=419 Identities=22% Similarity=0.327 Sum_probs=293.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCEEEECCCEEECCCCCCHHHHHHHHHC
Q ss_conf 99379997628899999999979996899925999731011023299988877605501450532999959999999829
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLG 126 (688)
Q Consensus 47 ~~dVvIIGAGiaGLsAA~~L~k~G~~V~VlE~~~~~GGr~~s~~~~g~~g~~~~~~~d~G~~~i~~~~~~~l~~l~~~lG 126 (688)
++||+|||||++||+||+.|++.|++|+|||+++++||++.|....|. .+|.|++++... .+.+..+++++|
T Consensus 5 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~-------~~~~g~~~~~~~-~~~~~~~~~~~g 76 (453)
T 2yg5_A 5 QRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGA-------VLEIGGQWVSPD-QTALISLLDELG 76 (453)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCEEEETTE-------EEECSCCCBCTT-CHHHHHHHHHTT
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEECCCCCCC-------EECCCCEEECCC-CHHHHHHHHHCC
T ss_conf 488899898799999999999789948999787877884303446883-------132598275175-089999999839
Q ss_pred CCEEEECC-CCCEEECC-CCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHC----------CCCCCCHHHHHHHHH
Q ss_conf 96655508-82178159-932191-----35589999999999999999998400----------136999889999999
Q 005607 127 SLLHKVRD-KCPLYRLD-GNSVDP-----EIDMKVEADFNRLLDKASRLRQLMGE----------VAMDVSLGSALETFW 189 (688)
Q Consensus 127 l~~~~~~~-~~~~~~~~-g~~~~~-----~~~~~~~~~~~~ll~~~~~~~~~~~~----------~~~~~s~~~~l~~~~ 189 (688)
+....... ...++..+ +..... +........+..++.....+...+.. ..++.++.+++...
T Consensus 77 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~- 155 (453)
T 2yg5_A 77 LKTFERYREGESVYISSAGERTRYTGDSFPTNETTKKEMDRLIDEMDDLAAQIGAEEPWAHPLARDLDTVSFKQWLINQ- 155 (453)
T ss_dssp CCEEECCCCSEEEEECTTSCEEEECSSSCSCCHHHHHHHHHHHHHHHHHHHHHCSSCGGGSTTHHHHHSSBHHHHHHHH-
T ss_pred CCCCCCCCCCCEEEEECCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHH-
T ss_conf 9421014689779981798356436888987705589999999999999965687788789523444124499999863-
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHCCC-CCC-----CCCCCEEECCCCHHHHHHHHHHCC--CCC
Q ss_conf 9942689999999999999831101343-0245678741258-998-----889980560897589999998708--931
Q 005607 190 RVYWDSGNAEAMNLFNWHLANLEYANAS-LLSKLSLAFWDQD-DPY-----DMGGDHCFLPGGNGRLVQALVENV--PIL 260 (688)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~~~~~~~-~~~-----~~~g~~~~~~GG~~~L~~aL~~~i--~I~ 260 (688)
...+....++.+........... .++......+... ... ..+..++++.||++.++++|++.+ +|+
T Consensus 156 -----~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~g~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~lg~~i~ 230 (453)
T 2yg5_A 156 -----SDDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFSHLVDEDFILDKRVIGGMQQVSIRMAEALGDDVF 230 (453)
T ss_dssp -----CSCHHHHHHHHHHHCCCCCCSCTTSSBHHHHHHHHHHTTCHHHHHCHHHHTCEEETTCTHHHHHHHHHHHGGGEE
T ss_pred -----CCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCCCEE
T ss_conf -----599999999999987631368745564899998733478676513578850689759757999999986577588
Q ss_pred CCCEEEEEEECCCE-EEEEECCEEEEECEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCC
Q ss_conf 48158899964990-89998997999369999279871017751137999799999998239863249999948766456
Q 005607 261 YEKTVHTIRYGSDG-VQVLAGSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWET 339 (688)
Q Consensus 261 ~n~~V~~I~~~~~~-v~V~t~G~~i~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f~~~~w~~ 339 (688)
+|++|++|..++++ |.|+++++++.||+||+|+|+.++.+ +.+.|.+|+.+.+++++++++++.||++.|++++|..
T Consensus 231 ~~~~V~~i~~~~~~~v~v~~~~~~~~ad~VI~a~p~~~~~~--l~~~p~lp~~~~~~i~~~~~~~~~kv~l~~~~~~w~~ 308 (453)
T 2yg5_A 231 LNAPVRTVKWNESGATVLADGDIRVEASRVILAVPPNLYSR--ISYDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFWRE 308 (453)
T ss_dssp CSCCEEEEEEETTEEEEEETTTEEEEEEEEEECSCGGGGGG--SEEESCCCHHHHHHGGGEEECCEEEEEEEESSCGGGG
T ss_pred CCCCEEEEEEECCCEEEEEECCEEEECCEEEECCCHHHHHC--CEECCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCCC
T ss_conf 68944899984895089997991998198998689788831--7758999989999996478830689999979987788
Q ss_pred CCCCCEEEECCCCCCCCEEEEEECCCCCC-CCEEEEEECCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
Q ss_conf 88972133339999972499851332589-75899993451557621999689999999999865099999888884289
Q 005607 340 DLDTFGHLTDDSSSRGEFFLFYSYATVAG-GPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTV 418 (688)
Q Consensus 340 ~~~~~g~l~~~~~~~~~~~~~~~~~~p~g-~~ll~~yv~g~~a~~~~~ls~eel~~~vl~~L~~if~~~~~~v~~p~~~~ 418 (688)
.. ..+.+... ..++.+.++...+++ ..++++++.++.+..|..++++++++.++++|+++|+. ++..|..+.
T Consensus 309 ~~-~~g~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~---~~~~p~~~~ 381 (453)
T 2yg5_A 309 DG-LSGTGFGA---SEVVQEVYDNTNHEDDRGTLVAFVSDEKADAMFELSAEERKATILASLARYLGP---KAEEPVVYY 381 (453)
T ss_dssp GT-EEEEEECT---TSSSCEEEECCCTTCSSEEEEEEEEHHHHHHHHHSCHHHHHHHHHHHHHHHHCG---GGGCCSEEE
T ss_pred CC-CCCEEECC---CCCEEEEEECCCCCCCCCEEEEEECCHHHHHHHCCCHHHHHHHHHHHHHHHHCC---CCCCCCEEE
T ss_conf 99-77606438---987599974888889987899992437777774499999999999999998473---578835899
Q ss_pred EECCCCCCCCCCCCC-CCCCCCCCCCHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 932799999976267-888999965178875225999399930233363573115889999999999999985
Q 005607 419 CTRWGGDPFSLGSYS-NVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCAN 490 (688)
Q Consensus 419 ~~rW~~~p~~~Gay~-~~~pG~~~~~~~~l~~pv~~~~LyfAGd~~~~~~~g~veGAi~SG~~aA~~Il~~l~ 490 (688)
.++|..+||..|+|. ...||......+.+++|+ +||||||++++..++|+||||+.||.+||++|++.++
T Consensus 382 ~~~W~~~~~~~G~~~~~~~~g~~~~~~~~~~~p~--~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~ 452 (453)
T 2yg5_A 382 ESDWGSEEWTRGCYAASFDLGGLHRYGADSRTPV--GPIHFSCSDIAAEGYQHVDGAVRMGQRTAADIIARSK 452 (453)
T ss_dssp ECCTTTCTTTCSSSCEEECTTHHHHHGGGTTCCB--TTEEECCGGGCSTTTTSHHHHHHHHHHHHHHHHHHC-
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCHHHHHCCC--CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 7236889888977768679985022217873886--8669964002431204369999999999999999732
No 8
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=1.00 E-value=1 Score=353.90 Aligned_cols=433 Identities=25% Similarity=0.413 Sum_probs=297.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCEEEEEECCCCCCCCCCEEEECCCEEECC---CCCCHHHHH
Q ss_conf 99937999762889999999997999-68999259997310110232999888776055014505329---999599999
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTG---TLGNPLGIL 121 (688)
Q Consensus 46 ~~~dVvIIGAGiaGLsAA~~L~k~G~-~V~VlE~~~~~GGr~~s~~~~g~~g~~~~~~~d~G~~~i~~---~~~~~l~~l 121 (688)
+.+||+|||||++||++|+.|++.|+ +|+|||+++++||++.+....+. .+|.|++|+.+ ...+++..+
T Consensus 3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~~~~~~~-------~~d~g~~~~~~~~~~~~~~~~~~ 75 (472)
T 1b37_A 3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGI-------NVELGANWVEGVNGGKMNPIWPI 75 (472)
T ss_dssp --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEETTE-------EEESSCCEEEEESSSSCCTHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEECCCCCC-------EEEECCEEEECCCCCCCCHHHHH
T ss_conf 88808998977999999999986699856999278877885322135782-------78348868964688887789999
Q ss_pred HHH-HCCCEEEECCC---CCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 998-29966555088---217815993219135589999999999999999998400-1369998899999999942689
Q 005607 122 AKQ-LGSLLHKVRDK---CPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLRQLMGE-VAMDVSLGSALETFWRVYWDSG 196 (688)
Q Consensus 122 ~~~-lGl~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~-~~~~~s~~~~l~~~~~~~~~~~ 196 (688)
+++ +|+........ ..++..+|..++.+...........+......+...+.. ..++.++... .++........
T Consensus 76 ~~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~l~~~~~~~~ 154 (472)
T 1b37_A 76 VNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGEKLSATLHASGRDDMSILAM-QRLNEHQPNGP 154 (472)
T ss_dssp HHTTSCCCEEECCCTTGGGCEECSSSSBCCHHHHHHHHHHHHHHHHHHHHHHHTSCTTCTTCCBHHHH-HHHHHTSSSSC
T ss_pred HHHHCCCCEEECCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH-HHHHHHCCCCC
T ss_conf 97643973340447643432584789798899999999999999999999987513455203669999-99864214566
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCC-CCCCCEE--ECCCCHHHHHHHHHHCC-------------CCC
Q ss_conf 9999999999998311013430245678741258998-8899805--60897589999998708-------------931
Q 005607 197 NAEAMNLFNWHLANLEYANASLLSKLSLAFWDQDDPY-DMGGDHC--FLPGGNGRLVQALVENV-------------PIL 260 (688)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~g~~~--~~~GG~~~L~~aL~~~i-------------~I~ 260 (688)
......++.+......+.... ..+++........+ ..++... .+.||++.++++|++.+ +|+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~~~~~~~i~~~~i~ 232 (472)
T 1b37_A 155 ATPVDMVVDYYKFDYEFAEPP--RVTSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQ 232 (472)
T ss_dssp CSHHHHHHHHHHTHHHHSSCG--GGBBSTTTSSCHHHHHHCSEEEEECCTTCTTHHHHHHHHTTSCBCTTTCCBCCTTEE
T ss_pred CCHHHHHHHHHHHHHHHCCCC--CCCCHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEE
T ss_conf 548999999999864004552--336444403333202468963664269869999999987462212333466664798
Q ss_pred CCCEEEEEEECCCEEEEEE-CCEEEEECEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCC
Q ss_conf 4815889996499089998-997999369999279871017751137999799999998239863249999948766456
Q 005607 261 YEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWET 339 (688)
Q Consensus 261 ~n~~V~~I~~~~~~v~V~t-~G~~i~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f~~~~w~~ 339 (688)
+|++|++|+.++++++|++ +|++++||+||+|+|+.++.++.+.+.|.||+.+.++++++.++++.||++.|+++||..
T Consensus 233 ~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~l~~~~~~~~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w~~ 312 (472)
T 1b37_A 233 LNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTKIFLKFPRKFWPE 312 (472)
T ss_dssp SSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSEEECEEEEEEECSSCCSCC
T ss_pred CCCEEEEEEECCCCEEEEECCCCEEECCEEEEECCHHHHCCCCEEECCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCC
T ss_conf 08878999975990799989998999298999469789564870578999999999998469764249999879867899
Q ss_pred CCCCCEEEECCCCCCCCEEEEEE-CCCCCCCCEEEEEECCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
Q ss_conf 88972133339999972499851-33258975899993451557621999689999999999865099999888884289
Q 005607 340 DLDTFGHLTDDSSSRGEFFLFYS-YATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTV 418 (688)
Q Consensus 340 ~~~~~g~l~~~~~~~~~~~~~~~-~~~p~g~~ll~~yv~g~~a~~~~~ls~eel~~~vl~~L~~if~~~~~~v~~p~~~~ 418 (688)
.. ..+.+...+...+....+.. ....++..+++.++.+..+..|..++++++++.++++|+++||. ..+++++.+.
T Consensus 313 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~a~~~~~~~~~e~~~~~l~~L~~~~Pg--~~~~~~~~~~ 389 (472)
T 1b37_A 313 GK-GREFFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPG--KDVPDATDIL 389 (472)
T ss_dssp ST-TCSEEEECCSSTTSSCEEEECTTTSTTCCEEEEEEEHHHHHHHHTSCHHHHHHHHHHHHHHHCTT--SCCCCCSEEE
T ss_pred CC-CCCEEEECCCCCCCCEEEECCCCCCCCCCEEEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHCCC--CCCCCCCEEE
T ss_conf 99-86158752667763303431567789988899992537888987289999999999999997399--9899976689
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 932799999976267888999965178875225999399930233363573115889999999999999985422
Q 005607 419 CTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANARA 493 (688)
Q Consensus 419 ~~rW~~~p~~~Gay~~~~pG~~~~~~~~l~~pv~~~~LyfAGd~~~~~~~g~veGAi~SG~~aA~~Il~~l~~~~ 493 (688)
+++|..+|+..|+|+...||.....++.+++|+ +||||||+++++.++||||||+.||.+||++|++.++.+.
T Consensus 390 ~~~W~~~~~~~G~~~~~~~g~~~~~~~~l~~p~--~~l~fAG~~t~~~~~g~v~GA~~SG~~aA~~i~~~l~~~~ 462 (472)
T 1b37_A 390 VPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPV--GRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQKKM 462 (472)
T ss_dssp CCCTTTCTTTSSSEEECBTTCCHHHHHHHHCCB--TTEEECSGGGCTTTTTSHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ECCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC--CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 650699999884568788998866899985667--8189821446787787316899999999999999987076
No 9
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=1.00 E-value=1 Score=336.22 Aligned_cols=422 Identities=22% Similarity=0.273 Sum_probs=285.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCEEEECCCEEECCCCCCHHHHHHHHH
Q ss_conf 99937999762889999999997999689992599973101102329998887760550145053299995999999982
Q 005607 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQL 125 (688)
Q Consensus 46 ~~~dVvIIGAGiaGLsAA~~L~k~G~~V~VlE~~~~~GGr~~s~~~~g~~g~~~~~~~d~G~~~i~~~~~~~l~~l~~~l 125 (688)
..+||+|||||++||+||+.|++.|++|+|||+++++||++.+...... +..+|+|+++++.. ...+..+++++
T Consensus 32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~~~~~~~~-----~~~~~~g~~~~~~~-~~~~~~~~~~~ 105 (498)
T 2iid_A 32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEA-----GWYANLGPMRLPEK-HRIVREYIRKF 105 (498)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTT-----TEEEESSCCCEETT-CHHHHHHHHHT
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEECCCCC-----CCHHHCCCCCCCCH-HHHHHHHHHHH
T ss_conf 9987899889999999999998689828999788888874343126887-----71110674003454-89999999996
Q ss_pred CCCEEEECC--CCCEEECCCCCCC----------------HH-HHHHHHHHHHHHHHH-HHHHHH----HHHCCCCCCCH
Q ss_conf 996655508--8217815993219----------------13-558999999999999-999999----84001369998
Q 005607 126 GSLLHKVRD--KCPLYRLDGNSVD----------------PE-IDMKVEADFNRLLDK-ASRLRQ----LMGEVAMDVSL 181 (688)
Q Consensus 126 Gl~~~~~~~--~~~~~~~~g~~~~----------------~~-~~~~~~~~~~~ll~~-~~~~~~----~~~~~~~~~s~ 181 (688)
|+....... ...++..++.... .. ........+...+.. ...+.. ......++.++
T Consensus 106 g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 185 (498)
T 2iid_A 106 DLRLNEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYST 185 (498)
T ss_dssp TCCEEEECSCCTTSEEEETTEEEEHHHHHHCGGGGCCCCCGGGTTCCHHHHHHHHTHHHHHHHHHSCHHHHHHHHTTSBH
T ss_pred CCCCEEECCCCCCCEEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99865511367761799589160253002585302667774446989999999999999998743227899888651369
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHCC--CC
Q ss_conf 8999999999426899999999999998311013430245678741258998889980560897589999998708--93
Q 005607 182 GSALETFWRVYWDSGNAEAMNLFNWHLANLEYANASLLSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQALVENV--PI 259 (688)
Q Consensus 182 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~~~~~~GG~~~L~~aL~~~i--~I 259 (688)
.+++... ...+......+.................+...... .....+..+.||++.|+++|++.+ +|
T Consensus 186 ~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~gG~~~l~~~l~~~l~~~i 255 (498)
T 2iid_A 186 KEYLIKE-----GDLSPGAVDMIGDLLNEDSGYYVSFIESLKHDDIF-----AYEKRFDEIVDGMDKLPTAMYRDIQDKV 255 (498)
T ss_dssp HHHHHHT-----SCCCHHHHHHHHHHTTCGGGTTSBHHHHHHHHHHH-----TTCCCEEEETTCTTHHHHHHHHHTGGGE
T ss_pred HHHHHHC-----CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC-----CCCCCEEEECCCHHHHHHHHHHHCCCCC
T ss_conf 9999872-----49998999889875375565148799999987003-----5686368868969999999998635653
Q ss_pred CCCCEEEEEEECCCEEEEEE-CCE----EEEECEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCC
Q ss_conf 14815889996499089998-997----9993699992798710177511379997999999982398632499999487
Q 005607 260 LYEKTVHTIRYGSDGVQVLA-GSQ----VFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPY 334 (688)
Q Consensus 260 ~~n~~V~~I~~~~~~v~V~t-~G~----~i~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f~~ 334 (688)
++|++|++|+.++++|.|++ +++ +++||+||+|+|+..+. .+.|.|+||+.+.+++++++++++.||++.|++
T Consensus 256 ~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~ad~vI~t~p~~~~~--~i~f~p~Lp~~~~~ai~~l~~~~~~kv~l~~~~ 333 (498)
T 2iid_A 256 HFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVR--LIKFNPPLLPKKAHALRSVHYRSGTKIFLTCTT 333 (498)
T ss_dssp ESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHT--TSEEESCCCHHHHHHHHHCCEECEEEEEEEESS
T ss_pred CCCCEEEEEEECCCEEEEEEECCCCCCCEEEECEEEECCCHHHHH--HEECCCCCCHHHHHHHHHCCCCCEEEEEEEECC
T ss_conf 249879999987993899994488664058719899898868773--121688999999999985788651699999689
Q ss_pred CCCCCCCCCCEEEECCCCCCCCEEEEEEC-CCCCCCCEEEEEECCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 66456889721333399999724998513-32589758999934515576219996899999999998650999998888
Q 005607 335 VFWETDLDTFGHLTDDSSSRGEFFLFYSY-ATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPE 413 (688)
Q Consensus 335 ~~w~~~~~~~g~l~~~~~~~~~~~~~~~~-~~p~g~~ll~~yv~g~~a~~~~~ls~eel~~~vl~~L~~if~~~~~~v~~ 413 (688)
+||..+....+...... .....+++. ..|.+..++++|+.++.+..|..++++++++.++++|+++|+.....+..
T Consensus 334 ~~w~~~~~~~~~~~~~~---~~~~~~~~s~~~p~g~~~L~~~~~g~~a~~~~~~~~~~~~~~~l~~L~~~~g~~~~~~~~ 410 (498)
T 2iid_A 334 KFWEDDGIHGGKSTTDL---PSRFIYYPNHNFTNGVGVIIAYGIGDDANFFQALDFKDCADIVFNDLSLIHQLPKKDIQS 410 (498)
T ss_dssp CGGGGGTCCSSEEEESS---TTCEEECCSSCCTTSCEEEEEEEEHHHHHTTTTSCHHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCC---CCCEEEECCCCCCCCCCEEEEEECCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 99617775478603789---841499789887799818999957842766653999999999999999981997566565
Q ss_pred -CCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf -842899327999999762678889999651788752259993999302333635731158899999999999999854
Q 005607 414 -PIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANA 491 (688)
Q Consensus 414 -p~~~~~~rW~~~p~~~Gay~~~~pG~~~~~~~~l~~pv~~~~LyfAGd~~~~~~~g~veGAi~SG~~aA~~Il~~l~~ 491 (688)
+....+++|..+||+.|+|+++.|++.....+.+.+|. +||||||++++.. +|||+||+.||.++|++|++.+..
T Consensus 411 ~~~~~~~~~W~~~p~~~G~~~~~~~~~~~~~~~~l~~p~--~~l~fAGe~t~~~-~g~~~GAi~SG~raA~~i~~~l~~ 486 (498)
T 2iid_A 411 FCYPSVIQKWSLDKYAMGGITTFTPYQFQHFSDPLTASQ--GRIYFAGEYTAQA-HGWIDSTIKSGLRAARDVNLASEN 486 (498)
T ss_dssp HEEEEEEEEGGGCTTTCSSEECCCTTHHHHHHHHHHCCB--TTEEECSGGGSSS-SSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HCCCCEEEECCCCCCCCCEEEECCCCCHHHHHHHHHCCC--CCEEEEECCCCCC-CCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 347617986589988881005027854677889972978--8689987200368-717999999999999999997449
No 10
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=1.00 E-value=1 Score=329.05 Aligned_cols=404 Identities=22% Similarity=0.289 Sum_probs=275.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECC---CCCCCCCCEEEECCCEEECCCCCCHHHHHHH
Q ss_conf 9937999762889999999997999689992599973101102329---9988877605501450532999959999999
Q 005607 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKME---GGAGNRISASADLGGSVLTGTLGNPLGILAK 123 (688)
Q Consensus 47 ~~dVvIIGAGiaGLsAA~~L~k~G~~V~VlE~~~~~GGr~~s~~~~---g~~g~~~~~~~d~G~~~i~~~~~~~l~~l~~ 123 (688)
++||||||||++||+||+.|++.|++|+|||+++++||++.+.... +. .+|+|++++.......+..+++
T Consensus 1 ~~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~cipg~-------~~~~g~~~~~~~~~~~~~~~~~ 73 (431)
T 3k7m_X 1 MYDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGL-------RVEIGGAYLHRKHHPRLAAELD 73 (431)
T ss_dssp CEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEEECSSSTTC-------EEESSCCCBCTTTCHHHHHHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEECCEECCCCCCC-------EEECCCEEECCCCCHHHHHHHH
T ss_conf 987899898578999999999869909999657776673041234578996-------3725873668887679999999
Q ss_pred HHCCCEEEECCCCCEE--ECCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHH----HC-CCCCCCHHHHHHHHHHH
Q ss_conf 8299665550882178--15993219-----1355899999999999999999984----00-13699988999999999
Q 005607 124 QLGSLLHKVRDKCPLY--RLDGNSVD-----PEIDMKVEADFNRLLDKASRLRQLM----GE-VAMDVSLGSALETFWRV 191 (688)
Q Consensus 124 ~lGl~~~~~~~~~~~~--~~~g~~~~-----~~~~~~~~~~~~~ll~~~~~~~~~~----~~-~~~~~s~~~~l~~~~~~ 191 (688)
++|++........... ..++.... ..........+..+......+.... .. ...+.++.+++...
T Consensus 74 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~d~s~~~~l~~~--- 150 (431)
T 3k7m_X 74 RYGIPTAAASEFTSFRHRLGPTAVDQAFPIPGSEAVAVEAATYTLLRDAHRIDLEKGLENQDLEDLDIPLNEYVDKL--- 150 (431)
T ss_dssp HHTCCEEECCCCCEECCBSCTTCCSSSSCCCGGGHHHHHHHHHHHHHHHTTCCTTTCTTSSSCGGGCSBHHHHHHHH---
T ss_pred HHCCEEEECCCCCCEEEEECCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCHHHHHHHC---
T ss_conf 81986662278884799926984637878987999999999999999997558778766866366467899999761---
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH-CCC-CCC---CCCCCEEECCCCHHHHHHHHHHCC-CCCCCCEE
Q ss_conf 426899999999999998311013430245678741-258-998---889980560897589999998708-93148158
Q 005607 192 YWDSGNAEAMNLFNWHLANLEYANASLLSKLSLAFW-DQD-DPY---DMGGDHCFLPGGNGRLVQALVENV-PILYEKTV 265 (688)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~-~~~---~~~g~~~~~~GG~~~L~~aL~~~i-~I~~n~~V 265 (688)
...+....++..............++......+ ... ..+ ...... .+.+|++.+++.+.+.. +|++|++|
T Consensus 151 ---~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~l~~~~~~~~g~i~~~~~V 226 (431)
T 3k7m_X 151 ---DLPPVSRQFLLAWAWNMLGQPADQASALWMLQLVAAHHYSILGVVLSLDE-VFSNGSADLVDAMSQEIPEIRLQTVV 226 (431)
T ss_dssp ---TCCHHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHHTTSCHHHHHHTCCE-EETTCTHHHHHHHHTTCSCEESSCCE
T ss_pred ---CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEECCHHH-HCCCCHHHHHHHHHHHCCCEEECCEE
T ss_conf ---89989999999999986099852656999999998569960100023333-22886999999998537966838987
Q ss_pred EEEEECCCEEEEEE-CCEEEEECEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCC
Q ss_conf 89996499089998-99799936999927987101775113799979999999823986324999994876645688972
Q 005607 266 HTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTF 344 (688)
Q Consensus 266 ~~I~~~~~~v~V~t-~G~~i~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f~~~~w~~~~~~~ 344 (688)
++|+.++++++|++ +|++++||+||+|+|+.+++ .+.+.|++|..+.+++..+.+...+||.+.|++++|. .+
T Consensus 227 ~~i~~~~~~v~v~~~~g~~~~ad~vi~a~~~~~l~--~i~~~p~l~~~~~~~~~~~~~~~~~kv~~~~~~~~~~----i~ 300 (431)
T 3k7m_X 227 TGIDQSGDVVNVTVKDGHAFQAHSVIVATPMNTWR--RIVFTPALPERRRSVIEEGHGGQGLKILIHVRGAEAG----IE 300 (431)
T ss_dssp EEEECSSSSEEEEETTSCCEEEEEEEECSCGGGGG--GSEEESCCCHHHHHHHHHCCCCCEEEEEEEEESCCTT----EE
T ss_pred EEEEECCCEEEEEECCCCEEEECEEEEECCCCHHH--HEEECCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCC----CE
T ss_conf 89998699289998899899939799904833275--5033799998999999837976458999997987767----65
Q ss_pred EEEECCCCCCCCEEEEEECCCC-CCCCEEEEEECCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCC
Q ss_conf 1333399999724998513325-897589999345155762199968999999999986509999988888428993279
Q 005607 345 GHLTDDSSSRGEFFLFYSYATV-AGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWG 423 (688)
Q Consensus 345 g~l~~~~~~~~~~~~~~~~~~p-~g~~ll~~yv~g~~a~~~~~ls~eel~~~vl~~L~~if~~~~~~v~~p~~~~~~rW~ 423 (688)
+ ..++. ...++++... .+..++++++.++. +...+. + .+.+.|+++++. . .|.++..++|.
T Consensus 301 ~--~~d~~----~~~~~~~~~~~~~~~~l~~~~~g~~---~~~~~~-~---~~~~~l~~~~~~----~-~~~~~~~~~W~ 362 (431)
T 3k7m_X 301 C--VGDGI----FPTLYDYCEVSESERLLVAFTDSGS---FDPTDI-G---AVKDAVLYYLPE----V-EVLGIDYHDWI 362 (431)
T ss_dssp E--EBSSS----SSEEEEEEECSSSEEEEEEEEETTT---CCTTCH-H---HHHHHHHHHCTT----C-EEEEEECCCTT
T ss_pred E--CCCCC----EEEEEECCCCCCCCEEEEEEECCCC---CCCCCH-H---HHHHHHHHHCCC----C-CCCEEEECCCC
T ss_conf 7--27988----7999807678999859999953634---798889-9---999999996688----9-83176833168
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999976267888999965178875225999399930233363573115889999999999999985
Q 005607 424 GDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCAN 490 (688)
Q Consensus 424 ~~p~~~Gay~~~~pG~~~~~~~~l~~pv~~~~LyfAGd~~~~~~~g~veGAi~SG~~aA~~Il~~l~ 490 (688)
.+||+.|+|+++.||+....++.+++|+ +||||||++++..++||||||++||.|||.+|+....
T Consensus 363 ~d~~~~G~~~~~~~g~~~~~~~~l~~p~--g~~~fAGe~t~~~~~g~~~GA~~sg~raa~~i~~~~~ 427 (431)
T 3k7m_X 363 ADPLFEGPWVAPRVGQFSRVHKELGEPA--GRIHFVGSDVSLEFPGYIEGALETAECAVNAILHSHH 427 (431)
T ss_dssp TCTTTSSSSCCCCTTTTTTSSGGGGSCB--TTEEECSGGGCSSSTTSHHHHHHHHHHHHHHHHHC--
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHCCC--CCEEEEEHHHHCCCCEEEHHHHHHHHHHHHHHHHHHC
T ss_conf 9999888887758997754278971977--8489975355066874715999999999999986402
Done!