Query 005608
Match_columns 688
No_of_seqs 190 out of 1859
Neff 3.8
Searched_HMMs 29240
Date Tue Mar 26 18:33:49 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005608.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2112-2115//hhsearch_pdb/005608hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 1.0 1 1 113.5 5.8 73 616-688 12-88 (91)
2 1x4j_A Ring finger protein 38; 1.0 1 1 106.4 2.7 65 624-688 4-71 (75)
3 1v87_A Deltex protein 2; ring- 1.0 1 1 97.7 4.3 49 639-687 24-92 (114)
4 2ep4_A Ring finger protein 24; 1.0 1 1 97.6 4.8 52 637-688 12-63 (74)
5 4a0k_B E3 ubiquitin-protein li 1.0 1 1 96.8 0.5 51 637-687 45-110 (117)
6 2ect_A Ring finger protein 126 1.0 1 1 96.8 5.0 51 638-688 13-63 (78)
7 3dpl_R Ring-box protein 1; ubi 1.0 1 1 96.6 5.6 51 637-687 34-99 (106)
8 2ecl_A Ring-box protein 2; RNF 1.0 1 1 96.4 3.1 51 638-688 13-75 (81)
9 4ayc_A E3 ubiquitin-protein li 1.0 1 1 95.7 3.7 46 640-688 53-98 (138)
10 2kiz_A E3 ubiquitin-protein li 1.0 1 1 95.5 5.0 52 637-688 11-62 (69)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=113.48 Aligned_cols=73 Identities=37% Similarity=0.752 Sum_probs=63.8
Q ss_pred CCCCCCCHHHHHCCCCCCCCCCC----CCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 48999999888229960102689----88834322688889995099154790134519998834999975566799
Q 005608 616 NHQSGASANQINSLPLSTVQTDN----FEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSIT 688 (688)
Q Consensus 616 n~~rGaSke~I~sLP~~tiq~ds----~deeCsICLEefe~Ge~VrvLPC~HiFHkeCI~~WL~rkkTCPVCR~~Is 688 (688)
....|++++.|..||...+.... .+..|+||++.|..++.++.|||+|.||..||..||..+.+||+||.++.
T Consensus 12 ~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 12 VANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCCCCCCHHHHHHCCCEEECCCCCCCCCCCCCCCCCHHHCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 67789899999847772443665666899988436902158982796279994899999999976996838094079
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=106.41 Aligned_cols=65 Identities=28% Similarity=0.749 Sum_probs=54.6
Q ss_pred HHHHCCCCCCCCCC---CCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 88822996010268---988834322688889995099154790134519998834999975566799
Q 005608 624 NQINSLPLSTVQTD---NFEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSIT 688 (688)
Q Consensus 624 e~I~sLP~~tiq~d---s~deeCsICLEefe~Ge~VrvLPC~HiFHkeCI~~WL~rkkTCPVCR~~Is 688 (688)
..+..||...+... ..+..|+||++.|..++.++.|||+|.||..||..||..+.+||+||.++.
T Consensus 4 ~~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 4 GSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp CCCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred HHHHHCCCEEECCCCCCCCCCCCEECCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 66856881884576666799989388935279986998789987579999999974993907088078
No 3
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=1.00 E-value=1 Score=97.67 Aligned_cols=49 Identities=31% Similarity=0.642 Sum_probs=40.9
Q ss_pred CCCCCCCCCCCCCCCC---------------CEEEECCCCCCCHHHHHHHH-----HCCCCCCCCCCCC
Q ss_conf 8883432268888999---------------50991547901345199988-----3499997556679
Q 005608 639 FEEACAICLDNPSIGD---------------SIRHLPCLHKFHKDCIDPWL-----SRRPSCPVCKSSI 687 (688)
Q Consensus 639 ~deeCsICLEefe~Ge---------------~VrvLPC~HiFHkeCI~~WL-----~rkkTCPVCR~~I 687 (688)
.++.|+|||+.|..+. .++.+||+|.||..||..|| ..+.+||+||..+
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~ 92 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred CCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 999684078100374443332223455752135229979960499999999703677898699999823
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=97.59 Aligned_cols=52 Identities=37% Similarity=0.896 Sum_probs=47.2
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 8988834322688889995099154790134519998834999975566799
Q 005608 637 DNFEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSIT 688 (688)
Q Consensus 637 ds~deeCsICLEefe~Ge~VrvLPC~HiFHkeCI~~WL~rkkTCPVCR~~Is 688 (688)
...+..|+||++.|..+..++.|||+|.||..||..||..+.+||+||.++.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL 63 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCEECHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 8999989577920179972787089998549999999985996979593416
No 5
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=1.00 E-value=1 Score=96.80 Aligned_cols=51 Identities=31% Similarity=0.642 Sum_probs=42.2
Q ss_pred CCCCCCCCCCCCCCCCC-------------C--CEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 89888343226888899-------------9--509915479013451999883499997556679
Q 005608 637 DNFEEACAICLDNPSIG-------------D--SIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSI 687 (688)
Q Consensus 637 ds~deeCsICLEefe~G-------------e--~VrvLPC~HiFHkeCI~~WL~rkkTCPVCR~~I 687 (688)
+..++.|+||++.|... + .++.++|+|.||..||.+||..+.+||+||.++
T Consensus 45 d~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 45 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp CCCC--------------------------------------------------------------
T ss_pred CCCCCCCEECCHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHCCCCCCCCCCEE
T ss_conf 689976758794450858112136444566643110477585473799999997299088999864
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=1.00 E-value=1 Score=96.76 Aligned_cols=51 Identities=45% Similarity=1.103 Sum_probs=46.6
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 988834322688889995099154790134519998834999975566799
Q 005608 638 NFEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSIT 688 (688)
Q Consensus 638 s~deeCsICLEefe~Ge~VrvLPC~HiFHkeCI~~WL~rkkTCPVCR~~Is 688 (688)
.....|+||++.|..+..++.|||+|.||..||..||..+.+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 63 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT 63 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCC
T ss_pred CCCCCCEECCCCCCCCCCEEEECCCCEECHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 999989248830069977798588995358999999985990818697458
No 7
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=1.00 E-value=1 Score=96.56 Aligned_cols=51 Identities=31% Similarity=0.604 Sum_probs=43.7
Q ss_pred CCCCCCCCCCCCCCCCCC---------------CEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 898883432268888999---------------509915479013451999883499997556679
Q 005608 637 DNFEEACAICLDNPSIGD---------------SIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSI 687 (688)
Q Consensus 637 ds~deeCsICLEefe~Ge---------------~VrvLPC~HiFHkeCI~~WL~rkkTCPVCR~~I 687 (688)
+..++.|+||++.|...- .++.+||+|.||..||.+||..+.+||+||.++
T Consensus 34 d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 34 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp SSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCCCCCCCCCHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCEECHHHHHHHHHCCCCCCCCCCCC
T ss_conf 788989701796684847001023445677663376166486799899999997698586989826
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=96.44 Aligned_cols=51 Identities=27% Similarity=0.654 Sum_probs=41.5
Q ss_pred CCCCCCCCCCCCCCC-----------CCCEEEEC-CCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 988834322688889-----------99509915-4790134519998834999975566799
Q 005608 638 NFEEACAICLDNPSI-----------GDSIRHLP-CLHKFHKDCIDPWLSRRPSCPVCKSSIT 688 (688)
Q Consensus 638 s~deeCsICLEefe~-----------Ge~VrvLP-C~HiFHkeCI~~WL~rkkTCPVCR~~Is 688 (688)
..++.|+||++.|.. ++.++.+| |+|.||..||.+||..+.+||+||.++.
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCCCCCCHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 889999133935656486000225788568994899984475999999986898988297843
No 9
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=1.00 E-value=1 Score=95.67 Aligned_cols=46 Identities=35% Similarity=0.860 Sum_probs=41.5
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 8834322688889995099154790134519998834999975566799
Q 005608 640 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSIT 688 (688)
Q Consensus 640 deeCsICLEefe~Ge~VrvLPC~HiFHkeCI~~WL~rkkTCPVCR~~Is 688 (688)
+..|+||++.|..+ +.+||+|.||..||..|+..+.+||+||.++.
T Consensus 53 ~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp HSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCCCC---EECCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 59975627232796---67889998469999999976996999998278
No 10
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=95.46 Aligned_cols=52 Identities=42% Similarity=1.079 Sum_probs=46.8
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 8988834322688889995099154790134519998834999975566799
Q 005608 637 DNFEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSIT 688 (688)
Q Consensus 637 ds~deeCsICLEefe~Ge~VrvLPC~HiFHkeCI~~WL~rkkTCPVCR~~Is 688 (688)
......|+||++.|..++.++.+||+|.||..||..|+..+.+||+||..|.
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIE 62 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred CCCCCCCEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 8899999258913168986898689989989999999985997928096064
Done!