Query 005609
Match_columns 688
No_of_seqs 378 out of 1517
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 02:07:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005609.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005609hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1474 Transcription initiati 100.0 7.8E-44 1.7E-48 410.0 27.3 573 5-678 47-633 (640)
2 cd05496 Bromo_WDR9_II Bromodom 99.9 4.5E-27 9.7E-32 217.8 11.3 106 177-284 4-110 (119)
3 cd05495 Bromo_cbp_like Bromodo 99.9 7.7E-27 1.7E-31 212.9 11.7 104 177-280 2-106 (108)
4 cd05497 Bromo_Brdt_I_like Brom 99.9 9.1E-27 2E-31 212.1 10.7 101 179-279 5-106 (107)
5 cd05505 Bromo_WSTF_like Bromod 99.9 2.6E-26 5.6E-31 205.6 9.6 95 180-276 2-96 (97)
6 cd05506 Bromo_plant1 Bromodoma 99.9 4.4E-26 9.6E-31 204.3 9.6 99 179-277 1-99 (99)
7 cd05503 Bromo_BAZ2A_B_like Bro 99.9 8.3E-26 1.8E-30 202.2 9.6 96 180-277 2-97 (97)
8 cd05498 Bromo_Brdt_II_like Bro 99.9 9.1E-26 2E-30 203.4 9.5 98 180-277 2-102 (102)
9 cd05504 Bromo_Acf1_like Bromod 99.9 2.2E-25 4.9E-30 205.4 11.0 102 177-280 11-112 (115)
10 cd05507 Bromo_brd8_like Bromod 99.9 2.5E-25 5.3E-30 201.7 10.6 101 177-279 2-102 (104)
11 cd05499 Bromo_BDF1_2_II Bromod 99.9 2.1E-25 4.6E-30 201.2 9.8 98 180-277 2-102 (102)
12 cd05500 Bromo_BDF1_2_I Bromodo 99.9 3.5E-25 7.6E-30 200.2 10.6 100 177-276 3-102 (103)
13 cd05501 Bromo_SP100C_like Brom 99.9 6.9E-25 1.5E-29 197.6 11.3 97 179-280 3-99 (102)
14 cd05502 Bromo_tif1_like Bromod 99.9 9.5E-25 2.1E-29 199.3 12.0 101 177-280 3-106 (109)
15 cd05510 Bromo_SPT7_like Bromod 99.9 1.3E-24 2.7E-29 199.5 10.6 102 177-280 6-109 (112)
16 cd05509 Bromo_gcn5_like Bromod 99.9 9.9E-25 2.2E-29 196.3 9.7 99 179-279 2-100 (101)
17 cd05508 Bromo_RACK7 Bromodomai 99.9 1.3E-24 2.8E-29 195.3 10.1 97 177-276 2-98 (99)
18 cd05513 Bromo_brd7_like Bromod 99.9 4.7E-24 1E-28 191.4 9.3 93 179-273 2-94 (98)
19 cd05516 Bromo_SNF2L2 Bromodoma 99.9 5.2E-24 1.1E-28 194.0 9.0 99 179-279 2-106 (107)
20 cd05512 Bromo_brd1_like Bromod 99.9 8.6E-24 1.9E-28 189.7 9.2 92 179-272 2-93 (98)
21 cd05528 Bromo_AAA Bromodomain; 99.9 1.8E-23 3.9E-28 192.0 10.7 101 178-280 3-107 (112)
22 cd05511 Bromo_TFIID Bromodomai 99.9 1.5E-23 3.2E-28 192.5 10.1 101 182-284 4-104 (112)
23 cd05519 Bromo_SNF2 Bromodomain 99.9 4.9E-23 1.1E-27 186.3 8.8 96 180-277 2-103 (103)
24 cd05515 Bromo_polybromo_V Brom 99.9 6.4E-23 1.4E-27 186.2 9.0 97 180-278 2-104 (105)
25 cd05524 Bromo_polybromo_I Brom 99.9 1E-22 2.2E-27 187.3 9.7 100 179-280 3-108 (113)
26 cd05529 Bromo_WDR9_I_like Brom 99.9 3.5E-22 7.7E-27 187.5 11.8 104 174-278 20-126 (128)
27 smart00297 BROMO bromo domain. 99.9 4E-22 8.6E-27 179.7 10.4 102 176-279 5-106 (107)
28 cd05517 Bromo_polybromo_II Bro 99.9 4E-22 8.8E-27 180.5 8.8 94 180-275 2-101 (103)
29 cd05520 Bromo_polybromo_III Br 99.9 4.4E-22 9.6E-27 180.2 8.9 91 184-276 6-102 (103)
30 cd05525 Bromo_ASH1 Bromodomain 99.9 6.1E-22 1.3E-26 180.2 9.6 96 179-276 3-104 (106)
31 cd05518 Bromo_polybromo_IV Bro 99.9 5.5E-22 1.2E-26 179.6 8.7 94 181-276 3-102 (103)
32 PF00439 Bromodomain: Bromodom 99.8 5.6E-21 1.2E-25 165.0 8.2 84 183-268 1-84 (84)
33 cd04369 Bromodomain Bromodomai 99.8 7.9E-21 1.7E-25 166.3 8.7 96 180-277 2-99 (99)
34 cd05522 Bromo_Rsc1_2_II Bromod 99.8 1.8E-20 4E-25 169.9 9.7 95 180-276 6-103 (104)
35 cd05521 Bromo_Rsc1_2_I Bromodo 99.8 1.7E-20 3.7E-25 170.7 9.3 95 179-277 2-102 (106)
36 cd05492 Bromo_ZMYND11 Bromodom 99.8 4.6E-20 1E-24 168.4 10.6 98 184-281 6-107 (109)
37 cd05526 Bromo_polybromo_VI Bro 99.7 5.7E-17 1.2E-21 148.0 9.3 100 178-281 3-108 (110)
38 COG5076 Transcription factor i 99.7 7.9E-17 1.7E-21 176.1 9.2 104 177-282 141-250 (371)
39 KOG1245 Chromatin remodeling c 99.7 7.9E-17 1.7E-21 197.6 7.1 95 183-280 1306-1400(1404)
40 KOG1472 Histone acetyltransfer 99.4 1.3E-13 2.8E-18 158.4 6.5 101 178-280 606-706 (720)
41 cd05494 Bromodomain_1 Bromodom 99.4 5.7E-13 1.2E-17 123.0 5.0 81 178-258 3-90 (114)
42 KOG0955 PHD finger protein BR1 99.0 5.2E-10 1.1E-14 133.9 6.8 102 177-280 564-665 (1051)
43 cd05491 Bromo_TBP7_like Bromod 98.9 1.1E-09 2.5E-14 100.9 5.2 42 218-259 62-103 (119)
44 KOG0386 Chromatin remodeling c 98.8 5.3E-09 1.1E-13 122.7 7.1 100 181-282 1027-1132(1157)
45 KOG0008 Transcription initiati 98.7 1E-08 2.3E-13 122.6 6.5 94 184-279 1388-1481(1563)
46 KOG1827 Chromatin remodeling c 98.7 2.6E-08 5.5E-13 113.8 6.7 98 178-277 52-155 (629)
47 KOG0008 Transcription initiati 98.6 6E-08 1.3E-12 116.3 8.2 103 179-283 1262-1364(1563)
48 KOG1474 Transcription initiati 98.6 1.1E-08 2.5E-13 119.3 1.9 93 188-280 2-94 (640)
49 KOG1472 Histone acetyltransfer 98.4 1.3E-07 2.9E-12 109.6 4.7 67 192-260 300-366 (720)
50 KOG1828 IRF-2-binding protein 98.0 9.7E-07 2.1E-11 95.2 0.0 95 181-277 22-116 (418)
51 KOG1828 IRF-2-binding protein 97.9 5.5E-06 1.2E-10 89.5 2.7 84 185-271 215-298 (418)
52 COG5076 Transcription factor i 96.7 0.00047 1E-08 76.1 0.9 92 186-279 271-362 (371)
53 KOG1029 Endocytic adaptor prot 95.1 0.056 1.2E-06 63.4 7.6 60 598-657 341-410 (1118)
54 cd05493 Bromo_ALL-1 Bromodomai 95.0 0.028 6.1E-07 53.4 4.4 61 220-280 59-119 (131)
55 PLN03086 PRLI-interacting fact 94.9 0.1 2.2E-06 60.6 9.4 67 597-664 5-78 (567)
56 PF13904 DUF4207: Domain of un 94.9 0.32 6.8E-06 51.6 12.3 48 600-647 100-149 (264)
57 PF09726 Macoilin: Transmembra 93.8 1.2 2.7E-05 53.3 15.3 87 563-649 428-527 (697)
58 PTZ00266 NIMA-related protein 92.8 0.6 1.3E-05 57.9 10.9 17 257-273 221-237 (1021)
59 PTZ00266 NIMA-related protein 92.3 0.58 1.3E-05 58.1 9.9 25 67-95 45-69 (1021)
60 KOG1029 Endocytic adaptor prot 91.7 0.68 1.5E-05 54.9 8.9 25 634-658 402-428 (1118)
61 KOG0163 Myosin class VI heavy 90.6 1.1 2.3E-05 53.2 9.0 64 595-658 936-1008(1259)
62 PTZ00121 MAEBL; Provisional 88.5 1.9 4.1E-05 54.4 9.4 15 568-582 1120-1134(2084)
63 KOG0644 Uncharacterized conser 88.5 0.44 9.4E-06 56.9 4.0 59 217-275 1050-1108(1113)
64 KOG1144 Translation initiation 87.7 1.9 4.1E-05 51.4 8.4 21 597-617 225-245 (1064)
65 KOG3375 Phosphoprotein/predict 86.8 2.5 5.5E-05 40.9 7.4 58 597-654 108-170 (174)
66 KOG0732 AAA+-type ATPase conta 86.4 0.34 7.4E-06 59.7 1.7 64 196-259 533-601 (1080)
67 KOG2072 Translation initiation 84.1 3 6.4E-05 50.1 7.8 71 581-658 568-644 (988)
68 PF05110 AF-4: AF-4 proto-onco 84.1 1.6 3.4E-05 55.1 5.9 17 80-96 46-65 (1191)
69 KOG0163 Myosin class VI heavy 83.6 4.5 9.7E-05 48.2 8.8 20 381-400 771-790 (1259)
70 PF10252 PP28: Casein kinase s 82.8 4.7 0.0001 35.6 6.6 36 593-628 21-58 (82)
71 KOG2891 Surface glycoprotein [ 82.7 3.4 7.4E-05 43.9 6.8 19 598-616 330-348 (445)
72 KOG1363 Predicted regulator of 82.1 2.7 5.9E-05 48.1 6.4 16 636-651 350-365 (460)
73 COG4741 Predicted secreted end 80.4 18 0.0004 35.5 10.3 31 643-673 71-115 (175)
74 PTZ00121 MAEBL; Provisional 79.7 8.1 0.00018 49.2 9.5 6 180-185 358-363 (2084)
75 PHA03308 transcriptional regul 76.6 1.6 3.5E-05 51.4 2.3 16 589-604 1349-1364(1463)
76 KOG2002 TPR-containing nuclear 76.6 16 0.00034 45.1 10.5 61 211-278 261-328 (1018)
77 PLN02316 synthase/transferase 75.8 7.2 0.00016 48.9 7.8 17 371-387 98-114 (1036)
78 PLN03086 PRLI-interacting fact 75.5 4 8.6E-05 47.8 5.2 65 580-647 7-72 (567)
79 PRK09510 tolA cell envelope in 74.5 15 0.00033 41.2 9.2 12 551-562 47-58 (387)
80 PRK00409 recombination and DNA 73.4 18 0.00039 44.3 10.3 31 331-361 223-253 (782)
81 PRK09510 tolA cell envelope in 71.8 22 0.00049 39.9 9.7 8 611-618 107-114 (387)
82 PF06936 Selenoprotein_S: Sele 68.8 23 0.00051 36.0 8.3 58 590-661 71-128 (190)
83 TIGR03825 FliH_bacil flagellar 68.7 27 0.00058 36.8 9.1 83 569-651 4-92 (255)
84 PF07946 DUF1682: Protein of u 68.7 20 0.00044 39.1 8.4 8 371-378 110-117 (321)
85 COG3064 TolA Membrane protein 68.5 24 0.00053 38.4 8.6 11 635-645 167-177 (387)
86 KOG3054 Uncharacterized conser 67.6 24 0.00053 37.2 8.1 13 596-608 118-130 (299)
87 KOG4364 Chromatin assembly fac 66.7 18 0.00039 42.9 7.7 8 579-586 249-256 (811)
88 KOG2140 Uncharacterized conser 66.7 4.5 9.7E-05 46.7 2.9 16 28-43 2-17 (739)
89 KOG1144 Translation initiation 66.6 22 0.00047 43.0 8.5 18 609-626 245-262 (1064)
90 PRK06568 F0F1 ATP synthase sub 66.4 57 0.0012 32.2 10.2 18 636-653 104-121 (154)
91 TIGR01069 mutS2 MutS2 family p 66.0 30 0.00065 42.4 9.9 31 331-361 218-248 (771)
92 TIGR01069 mutS2 MutS2 family p 65.6 33 0.00071 42.0 10.2 16 612-627 545-560 (771)
93 KOG2357 Uncharacterized conser 65.5 12 0.00025 42.1 5.8 26 578-603 352-377 (440)
94 PF03154 Atrophin-1: Atrophin- 65.1 3.8 8.3E-05 50.1 2.1 48 595-651 578-625 (982)
95 PF09726 Macoilin: Transmembra 65.0 24 0.00052 42.7 8.7 23 601-623 504-527 (697)
96 PF05672 MAP7: MAP7 (E-MAP-115 64.7 37 0.0008 34.1 8.6 18 596-613 44-61 (171)
97 PF07946 DUF1682: Protein of u 64.7 17 0.00038 39.6 7.0 10 573-582 242-251 (321)
98 KOG0577 Serine/threonine prote 64.6 2.3E+02 0.005 34.1 15.9 23 605-627 537-559 (948)
99 KOG0982 Centrosomal protein Nu 64.4 34 0.00074 38.7 9.0 50 607-656 247-300 (502)
100 PF07218 RAP1: Rhoptry-associa 63.3 59 0.0013 38.1 10.8 24 605-628 237-260 (782)
101 KOG1150 Predicted molecular ch 62.1 54 0.0012 33.8 9.2 29 617-645 177-205 (250)
102 PHA03308 transcriptional regul 62.0 8 0.00017 45.9 3.9 17 216-232 965-981 (1463)
103 PRK06800 fliH flagellar assemb 61.7 60 0.0013 33.0 9.3 33 623-655 67-99 (228)
104 PF00836 Stathmin: Stathmin fa 61.2 11 0.00024 36.6 4.1 39 615-653 47-85 (140)
105 KOG2072 Translation initiation 59.5 60 0.0013 39.7 10.4 21 611-631 797-817 (988)
106 PRK06568 F0F1 ATP synthase sub 59.4 76 0.0017 31.3 9.6 38 621-658 78-115 (154)
107 COG4942 Membrane-bound metallo 59.1 46 0.00099 37.9 9.0 13 335-347 59-71 (420)
108 KOG3054 Uncharacterized conser 57.6 45 0.00097 35.2 8.0 8 651-658 175-182 (299)
109 PRK06569 F0F1 ATP synthase sub 57.5 59 0.0013 32.1 8.5 81 577-658 37-118 (155)
110 PLN02316 synthase/transferase 56.8 25 0.00055 44.2 7.2 11 445-455 165-175 (1036)
111 PRK00409 recombination and DNA 56.8 58 0.0013 40.0 10.2 29 576-606 502-530 (782)
112 COG4290 Guanyl-specific ribonu 56.7 6.5 0.00014 37.7 1.7 31 7-37 100-136 (152)
113 KOG2133 Transcriptional corepr 56.2 7.2 0.00016 47.7 2.3 57 590-653 805-861 (1229)
114 PF05262 Borrelia_P83: Borreli 56.0 46 0.001 38.6 8.6 18 382-399 77-94 (489)
115 KOG0644 Uncharacterized conser 52.6 4.5 9.7E-05 48.8 -0.1 73 201-275 88-192 (1113)
116 PF09727 CortBP2: Cortactin-bi 52.4 89 0.0019 32.0 9.0 58 600-658 85-155 (192)
117 COG4942 Membrane-bound metallo 51.9 88 0.0019 35.7 9.8 7 636-642 249-255 (420)
118 KOG2130 Phosphatidylserine-spe 51.1 12 0.00026 40.7 2.8 12 234-245 157-168 (407)
119 KOG3116 Predicted C3H1-type Zn 50.5 21 0.00046 34.9 4.1 9 504-512 145-153 (177)
120 KOG3654 Uncharacterized CH dom 49.6 74 0.0016 36.8 8.7 11 648-658 452-462 (708)
121 PF05672 MAP7: MAP7 (E-MAP-115 48.8 1.3E+02 0.0029 30.2 9.5 21 596-616 36-56 (171)
122 PF06936 Selenoprotein_S: Sele 47.9 84 0.0018 32.1 8.1 33 616-648 79-111 (190)
123 PRK08476 F0F1 ATP synthase sub 47.9 1.7E+02 0.0037 28.1 10.0 21 634-654 94-114 (141)
124 PF15236 CCDC66: Coiled-coil d 47.3 1.7E+02 0.0036 29.1 9.8 18 595-612 69-86 (157)
125 TIGR01932 hflC HflC protein. H 47.0 1.1E+02 0.0024 33.3 9.5 10 649-658 287-296 (317)
126 PRK14471 F0F1 ATP synthase sub 46.8 1.8E+02 0.0038 28.4 10.1 14 639-652 111-124 (164)
127 PRK00247 putative inner membra 46.5 1.2E+02 0.0025 34.9 9.7 16 333-348 80-95 (429)
128 CHL00019 atpF ATP synthase CF0 46.1 2E+02 0.0043 28.7 10.5 13 574-586 48-60 (184)
129 PRK06231 F0F1 ATP synthase sub 45.9 1.6E+02 0.0035 30.2 10.0 16 637-652 149-164 (205)
130 PF06785 UPF0242: Uncharacteri 45.9 83 0.0018 34.7 8.0 52 599-653 130-181 (401)
131 PF15346 ARGLU: Arginine and g 45.3 1.3E+02 0.0028 29.6 8.6 6 660-665 139-144 (149)
132 KOG2689 Predicted ubiquitin re 44.8 78 0.0017 34.1 7.5 10 646-655 170-179 (290)
133 PRK06231 F0F1 ATP synthase sub 44.7 1.9E+02 0.004 29.7 10.2 9 578-586 76-84 (205)
134 PF07218 RAP1: Rhoptry-associa 44.5 1.6E+02 0.0034 34.8 10.3 23 598-620 248-270 (782)
135 CHL00118 atpG ATP synthase CF0 44.2 2.2E+02 0.0047 27.7 10.2 11 642-652 128-138 (156)
136 PRK14471 F0F1 ATP synthase sub 44.0 2E+02 0.0043 28.0 10.0 20 636-655 97-116 (164)
137 KOG1827 Chromatin remodeling c 43.5 3.5 7.6E-05 48.6 -2.8 74 197-272 214-287 (629)
138 PF06098 Radial_spoke_3: Radia 43.3 1.7E+02 0.0036 31.9 10.0 18 596-613 157-174 (291)
139 PF07888 CALCOCO1: Calcium bin 42.6 74 0.0016 37.4 7.6 65 566-630 333-412 (546)
140 PRK13454 F0F1 ATP synthase sub 42.0 2.2E+02 0.0048 28.5 10.1 21 635-655 130-150 (181)
141 CHL00118 atpG ATP synthase CF0 41.9 2.3E+02 0.0049 27.5 10.0 26 632-657 107-132 (156)
142 PRK13454 F0F1 ATP synthase sub 41.5 1.9E+02 0.0042 28.9 9.6 10 577-586 58-67 (181)
143 TIGR01216 ATP_synt_epsi ATP sy 40.5 57 0.0012 30.8 5.4 23 588-610 83-105 (130)
144 PRK13453 F0F1 ATP synthase sub 40.5 2.5E+02 0.0055 27.7 10.2 17 637-653 119-135 (173)
145 PRK14472 F0F1 ATP synthase sub 40.3 2.6E+02 0.0055 27.7 10.2 11 647-657 138-148 (175)
146 PRK01558 V-type ATP synthase s 40.3 2.3E+02 0.005 28.7 10.1 14 645-658 69-82 (198)
147 PF12052 VGCC_beta4Aa_N: Volta 40.3 30 0.00064 26.7 2.6 16 643-658 24-39 (42)
148 PRK13455 F0F1 ATP synthase sub 40.1 3.4E+02 0.0075 27.0 11.2 17 637-653 128-144 (184)
149 TIGR01933 hflK HflK protein. H 39.5 1.5E+02 0.0033 30.9 8.9 10 649-658 229-238 (261)
150 PRK11546 zraP zinc resistance 39.2 1.2E+02 0.0027 29.6 7.4 60 549-608 34-102 (143)
151 KOG2140 Uncharacterized conser 37.8 24 0.00053 41.0 2.7 14 473-486 677-690 (739)
152 COG3064 TolA Membrane protein 37.6 1.8E+02 0.004 32.0 9.0 6 634-639 180-185 (387)
153 PF05262 Borrelia_P83: Borreli 37.5 92 0.002 36.2 7.3 11 337-347 62-72 (489)
154 PRK09174 F0F1 ATP synthase sub 37.2 2.9E+02 0.0064 28.3 10.3 19 635-653 152-170 (204)
155 PF05501 DUF755: Domain of unk 37.2 26 0.00056 33.3 2.4 7 355-361 54-60 (123)
156 PRK07352 F0F1 ATP synthase sub 36.9 2.9E+02 0.0063 27.2 10.0 10 577-586 46-55 (174)
157 PF06658 DUF1168: Protein of u 36.6 2.6E+02 0.0057 27.3 9.2 15 599-613 47-61 (142)
158 PRK13460 F0F1 ATP synthase sub 36.5 3E+02 0.0064 27.2 10.0 14 645-658 134-147 (173)
159 PF14372 DUF4413: Domain of un 36.2 77 0.0017 28.6 5.3 49 232-280 3-51 (101)
160 PF06548 Kinesin-related: Kine 36.0 2E+02 0.0043 33.2 9.3 62 597-658 397-470 (488)
161 PRK07352 F0F1 ATP synthase sub 34.8 3.5E+02 0.0077 26.6 10.2 10 574-583 55-64 (174)
162 PRK14475 F0F1 ATP synthase sub 34.1 3.5E+02 0.0075 26.6 10.0 18 637-654 111-128 (167)
163 KOG2505 Ankyrin repeat protein 33.5 1.7E+02 0.0036 34.2 8.3 17 614-630 525-541 (591)
164 KOG2412 Nuclear-export-signal 33.5 1.9E+02 0.0042 34.0 8.9 18 641-658 260-277 (591)
165 PRK03963 V-type ATP synthase s 33.4 2.9E+02 0.0062 27.6 9.4 46 600-645 33-79 (198)
166 PRK14472 F0F1 ATP synthase sub 33.3 3.1E+02 0.0066 27.1 9.5 10 643-652 125-134 (175)
167 PRK13453 F0F1 ATP synthase sub 33.3 3.6E+02 0.0078 26.7 10.0 17 642-658 133-149 (173)
168 PF03154 Atrophin-1: Atrophin- 33.1 27 0.00059 43.1 2.3 23 636-658 606-628 (982)
169 PRK13428 F0F1 ATP synthase sub 33.0 2.7E+02 0.0059 32.0 10.2 14 639-652 104-117 (445)
170 PLN03188 kinesin-12 family pro 32.9 1.9E+02 0.0041 37.4 9.3 62 597-658 1167-1240(1320)
171 PRK01885 greB transcription el 32.8 74 0.0016 31.3 4.9 25 598-622 13-37 (157)
172 TIGR03321 alt_F1F0_F0_B altern 32.4 3.5E+02 0.0076 28.3 10.2 9 642-650 111-119 (246)
173 PF09831 DUF2058: Uncharacteri 32.3 2.4E+02 0.0053 28.5 8.5 25 634-658 59-83 (177)
174 PRK02292 V-type ATP synthase s 32.1 3.4E+02 0.0074 26.9 9.7 18 600-617 17-34 (188)
175 KOG2412 Nuclear-export-signal 31.8 91 0.002 36.5 6.0 26 600-625 232-259 (591)
176 KOG4220 Muscarinic acetylcholi 31.6 8.7E+02 0.019 28.2 13.9 12 640-651 408-419 (503)
177 PF09802 Sec66: Preprotein tra 31.0 6E+02 0.013 26.1 12.1 39 555-593 64-110 (190)
178 PF11875 DUF3395: Domain of un 30.9 2E+02 0.0043 28.1 7.5 9 601-609 8-16 (151)
179 cd07657 F-BAR_Fes_Fer The F-BA 30.8 2.2E+02 0.0048 29.9 8.3 62 594-658 114-180 (237)
180 KOG3634 Troponin [Cytoskeleton 30.7 1.5E+02 0.0033 32.7 7.1 25 589-613 86-110 (361)
181 KOG1420 Ca2+-activated K+ chan 30.7 34 0.00074 40.0 2.5 6 609-614 92-97 (1103)
182 PRK09173 F0F1 ATP synthase sub 30.5 4.8E+02 0.01 25.2 10.2 13 641-653 107-119 (159)
183 PF06785 UPF0242: Uncharacteri 30.5 4.3E+02 0.0094 29.4 10.4 79 562-650 62-167 (401)
184 TIGR03321 alt_F1F0_F0_B altern 30.4 3.3E+02 0.0071 28.5 9.6 10 644-653 122-131 (246)
185 PRK14474 F0F1 ATP synthase sub 30.1 4E+02 0.0086 28.2 10.2 12 646-657 124-135 (250)
186 PRK01005 V-type ATP synthase s 30.1 3.9E+02 0.0084 27.6 9.8 12 647-658 76-87 (207)
187 KOG2656 DNA methyltransferase 30.0 1.5E+02 0.0033 33.4 7.1 61 570-630 173-245 (445)
188 PRK07353 F0F1 ATP synthase sub 29.9 4.7E+02 0.01 24.5 10.1 13 641-653 110-122 (140)
189 PRK13428 F0F1 ATP synthase sub 29.5 2.5E+02 0.0054 32.3 9.1 17 641-657 115-131 (445)
190 PF04111 APG6: Autophagy prote 29.2 4E+02 0.0086 29.2 10.3 15 645-659 122-136 (314)
191 PRK07353 F0F1 ATP synthase sub 29.0 4.6E+02 0.01 24.5 9.6 22 635-656 93-114 (140)
192 COG2118 DNA-binding protein [G 28.9 2.1E+02 0.0045 27.0 6.7 23 646-668 70-92 (116)
193 KOG2130 Phosphatidylserine-spe 28.7 40 0.00086 37.0 2.4 8 272-279 163-170 (407)
194 CHL00019 atpF ATP synthase CF0 28.3 5.1E+02 0.011 25.8 10.2 10 643-652 131-140 (184)
195 PRK13461 F0F1 ATP synthase sub 28.2 5.5E+02 0.012 24.8 10.2 11 642-652 111-121 (159)
196 PTZ00491 major vault protein; 28.1 1.3E+02 0.0029 37.1 6.8 22 375-396 551-575 (850)
197 PRK05759 F0F1 ATP synthase sub 28.0 5.4E+02 0.012 24.6 10.2 15 643-657 120-134 (156)
198 PF11221 Med21: Subunit 21 of 28.0 1.7E+02 0.0036 28.3 6.4 62 575-647 76-141 (144)
199 PF05835 Synaphin: Synaphin pr 28.0 1E+02 0.0022 30.0 4.8 36 610-653 34-69 (139)
200 KOG2668 Flotillins [Intracellu 27.5 1.9E+02 0.0041 32.3 7.2 48 600-648 290-340 (428)
201 PF07046 CRA_rpt: Cytoplasmic 27.5 1.9E+02 0.0041 22.3 5.1 11 634-644 27-37 (42)
202 PF11180 DUF2968: Protein of u 27.5 6E+02 0.013 26.1 10.3 62 594-658 107-176 (192)
203 PTZ00436 60S ribosomal protein 27.4 1.9E+02 0.004 31.7 7.0 49 601-650 139-190 (357)
204 PRK13461 F0F1 ATP synthase sub 27.2 5.7E+02 0.012 24.7 10.1 11 642-652 100-110 (159)
205 KOG4326 Mitochondrial F1F0-ATP 27.1 3.3E+02 0.0072 23.7 7.1 17 554-570 3-20 (81)
206 COG2433 Uncharacterized conser 26.9 3.4E+02 0.0074 32.5 9.5 40 633-672 490-530 (652)
207 PRK09173 F0F1 ATP synthase sub 26.9 5.8E+02 0.013 24.6 10.9 7 648-654 103-109 (159)
208 PF07795 DUF1635: Protein of u 26.8 3.8E+02 0.0082 28.0 8.9 55 602-656 4-60 (214)
209 KOG2880 SMAD6 interacting prot 26.1 3.2E+02 0.0069 30.7 8.6 66 603-668 96-162 (424)
210 KOG2129 Uncharacterized conser 25.6 3.7E+02 0.0081 30.7 9.1 49 596-646 257-308 (552)
211 PRK13455 F0F1 ATP synthase sub 25.5 5.7E+02 0.012 25.4 10.0 10 577-586 54-63 (184)
212 cd07656 F-BAR_srGAP The F-BAR 25.4 3.6E+02 0.0079 28.3 8.8 17 642-658 186-202 (241)
213 TIGR02606 antidote_CC2985 puta 25.3 81 0.0018 26.8 3.2 26 224-249 12-37 (69)
214 TIGR03752 conj_TIGR03752 integ 25.3 1.8E+02 0.0039 33.7 6.9 64 558-621 41-109 (472)
215 KOG2117 Uncharacterized conser 24.7 1.5E+02 0.0033 33.2 5.9 27 599-625 81-111 (379)
216 PF06698 DUF1192: Protein of u 24.7 1.8E+02 0.0038 24.3 5.0 20 612-631 30-49 (59)
217 PF06637 PV-1: PV-1 protein (P 24.3 4.6E+02 0.0099 29.7 9.4 38 575-622 292-334 (442)
218 PF15186 TEX13: Testis-express 24.2 4.8E+02 0.01 25.7 8.5 41 614-655 89-129 (152)
219 PRK11029 FtsH protease regulat 23.7 4.8E+02 0.01 28.9 9.7 12 647-658 295-306 (334)
220 PRK09174 F0F1 ATP synthase sub 23.6 6.7E+02 0.015 25.7 10.2 27 577-604 80-106 (204)
221 PF12037 DUF3523: Domain of un 23.6 2.2E+02 0.0048 30.8 6.8 8 569-576 115-122 (276)
222 PF06637 PV-1: PV-1 protein (P 23.6 5.3E+02 0.012 29.2 9.8 43 589-631 289-331 (442)
223 COG1390 NtpE Archaeal/vacuolar 23.5 5.8E+02 0.013 26.0 9.6 58 598-655 16-74 (194)
224 TIGR01461 greB transcription e 23.1 2.7E+02 0.0059 27.3 6.9 26 597-622 10-35 (156)
225 COG1422 Predicted membrane pro 23.0 3E+02 0.0065 28.4 7.3 25 634-658 97-121 (201)
226 KOG2507 Ubiquitin regulatory p 22.6 4.5E+02 0.0098 30.2 9.1 7 572-578 198-204 (506)
227 KOG3756 Pinin (desmosome-assoc 22.5 2.7E+02 0.0058 30.6 7.1 39 641-679 206-249 (340)
228 PHA00451 protein kinase 22.4 4.6E+02 0.0099 28.6 8.7 69 590-658 226-311 (362)
229 cd07686 F-BAR_Fer The F-BAR (F 22.2 3.2E+02 0.007 28.8 7.7 61 595-658 115-177 (234)
230 PF13025 DUF3886: Protein of u 22.2 1.6E+02 0.0036 25.4 4.5 29 615-643 25-53 (70)
231 PF15437 PGBA_C: Plasminogen-b 22.2 4.3E+02 0.0093 23.6 7.0 45 609-653 37-82 (86)
232 PRK14473 F0F1 ATP synthase sub 21.7 7.4E+02 0.016 24.0 10.1 9 645-653 126-134 (164)
233 PRK06669 fliH flagellar assemb 21.6 6.6E+02 0.014 26.7 10.1 47 571-622 76-122 (281)
234 TIGR00570 cdk7 CDK-activating 21.2 5.4E+02 0.012 28.4 9.2 6 355-360 78-83 (309)
235 PF12848 ABC_tran_2: ABC trans 21.2 5.1E+02 0.011 21.9 10.1 39 592-630 13-51 (85)
236 PRK14475 F0F1 ATP synthase sub 21.2 7.8E+02 0.017 24.1 10.2 18 641-658 124-141 (167)
237 PRK12585 putative monovalent c 21.1 1.7E+02 0.0036 30.1 5.0 16 594-609 128-143 (197)
238 KOG4661 Hsp27-ERE-TATA-binding 20.9 4.8E+02 0.01 31.1 9.0 10 608-617 627-636 (940)
239 PRK02292 V-type ATP synthase s 20.5 6.7E+02 0.014 24.8 9.3 6 665-670 104-109 (188)
240 KOG2441 mRNA splicing factor/p 20.4 2.4E+02 0.0051 32.0 6.3 20 549-568 248-267 (506)
241 KOG1150 Predicted molecular ch 20.3 2.2E+02 0.0049 29.5 5.7 17 632-648 180-196 (250)
242 PF15236 CCDC66: Coiled-coil d 20.3 8.1E+02 0.017 24.4 9.4 22 597-618 81-102 (157)
243 KOG3654 Uncharacterized CH dom 20.3 2.8E+02 0.0061 32.4 7.0 12 673-684 476-487 (708)
No 1
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=100.00 E-value=7.8e-44 Score=410.03 Aligned_cols=573 Identities=26% Similarity=0.342 Sum_probs=356.1
Q ss_pred CCCCCCCcccccccccCCC-CCCCCCCCc-ccccccccCCCCcccccccccCCCCCCCCCcceeeeeCCCCCHHHHHHHH
Q 005609 5 NDRFSGGYYRSNAFETTGE-SEGSGSSGR-IDAEITASEDSSAPTRKCINLNPDKWDAFGVPLQVLSLPNLSRSERKDLV 82 (688)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~s~~~~~~~rk~~~~n~~~~~~f~v~~~~~~~s~~s~~e~~~L~ 82 (688)
+.-|+++++. .+|++++. ++.++.++. |..--.+++....++.+|+......-..|.++..++++.+++..++++|.
T Consensus 47 n~~~~~~~~~-~~f~~~~sn~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (640)
T KOG1474|consen 47 NYYFSASECI-ADFKTKFSNCYLFNDSGDDVVRMKQSLEKLFPKKLRSMPSDEEDKSSVGPKASKIPLDKDSSSQVRKLS 125 (640)
T ss_pred CccccHhhhh-hhccccccchhcccCCccchhhccccchhhcccccccccccccCCcccccccccCcCCCCchhhhhhhh
Confidence 6778888877 89999996 555555554 54444588888899999998887777779999999999999999999999
Q ss_pred HHHHhHHHHHHHHHhhhcccccCCcccC--CCcccccCCCCCCCCCccCCcccccccCCCCCCCCCCCCCCCCCCCCCCC
Q 005609 83 HKLTSDLEQIRILQKKAGVQRTNGVTVS--SSSDILSCSNGPNRPKVQNSRKSLVMTCGPGKKVNPVSNNSRGWNRGTSG 160 (688)
Q Consensus 83 ~rl~~Ele~VR~l~kkie~~~~~~~~~s--~~~~~~s~~~~~~~~~~~~~~~ss~~~s~~~kk~~~~~~~~~~~~r~~~g 160 (688)
.+|+.+|++||.+.++++......+... +........++.. .......... -....+...++.. ....-.+.+
T Consensus 126 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~ 200 (640)
T KOG1474|consen 126 ERLKQELQQVRPLTKAVEFSPEPSVVSPVSPASQPFKSKNGVK--KVADTCVKSY--KSKSEREPSPGQK-REGTVAPNS 200 (640)
T ss_pred hccccccccCCcccccccccccccccCCCCCcccccccccchh--hhhccccccc--cccCcCCCCcccc-ccccccCcc
Confidence 9999999999999999972211111111 1111000000000 0000000000 0000000000100 000000000
Q ss_pred CCCC---CC-CCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCC
Q 005609 161 RFES---AG-KPTSTTGTGNVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYS 236 (688)
Q Consensus 161 r~~~---~~-~~~~~~~~~~~~~~k~c~~IL~~L~~~~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~ 236 (688)
.... .. ............++++|..||..||+|+++|+|+.|||++.+++||||+||+|||||+|||+||.+|.|.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~ 280 (640)
T KOG1474|consen 201 SRESGDSAAEEEAKPKSKLTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYK 280 (640)
T ss_pred ccccccccccccccccccccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccC
Confidence 0000 00 1111234567899999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCCcchhhhhhhcCCccccchh
Q 005609 237 SPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARWKAIEKKLPVTKPQSLPEKSAPRANVETAKAIPPAKRKKI 316 (688)
Q Consensus 237 S~~eF~~DvrLIF~NA~~YN~~~s~V~~~A~~L~~~Fe~~~k~ie~k~p~~~~~~~p~~~~~~~~~~~~~~~pp~KkrK~ 316 (688)
++.+|++||||||.|||+||++||+||.||..|+.+|+.+|+.+...+............... ............++.
T Consensus 281 ~~~eF~~DVRL~F~Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 358 (640)
T KOG1474|consen 281 SAEEFAADVRLTFDNCMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIEESESAVKEEAGMAS--SDQIPSNSVEGPRSS 358 (640)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhcccccccccccccccccccc--ccccccccccCcccc
Confidence 999999999999999999999999999999999999999999864433211100000000000 000000011111122
Q ss_pred hcccccCCCCCCCCCCCHHHHHHHHHHHhhhcccChHHHHHHHHhhcCCCCCCCCCeEEEeCCCCCHHHHHHHHHHHHHH
Q 005609 317 EIMCQEIVPTAVKPVMTDQEKHNLGRELESLLAEMPVHIIDFLREHSSNGRETGEDEIEIDIDDLSNDTLLTLRKLLDDY 396 (688)
Q Consensus 317 ~~~~~~~~~ep~~r~MT~eEK~~L~~~I~~Lp~E~l~~II~II~~~~p~l~~~~~dEIEIDId~L~~eTL~eL~~yV~~~ 396 (688)
.........++....|+.+|+..+...+..++.+...+++..++............++++|+..+.+.-+...+......
T Consensus 359 ~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (640)
T KOG1474|consen 359 SFESRESASEPSSELMSEEERKKLLAELKLLLKDVPPQLIALLQRPVSKPPRKIEEELESDKRPLVTGKLIKEKNKKEKA 438 (640)
T ss_pred cchhcccccCcccccccHHhhhhhHhhhhcchhhhhHHHHhhhhccccCccccccccccccccccchhhhhhhhhccccc
Confidence 11222223344567899999999999999999999999999999766544333456666766666555122211111111
Q ss_pred HHHHhhcccCCCcchhhhhccccCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCC
Q 005609 397 LEEKQKNQANVEPCEIELLNESGLSNSSMQQGKGNDLPDEDIDIGGNEPPVSSYPPMEIEKDTAIKSSKRVSPGSSSGSE 476 (688)
Q Consensus 397 L~~k~K~~~~~ep~E~e~~~~sg~~nss~~~~k~~e~~dEdvdIgg~~~p~~~~~pv~iekd~~~~ss~~ssssSSSsS~ 476 (688)
.....+..+..+. ..+.+..+++ .+|-..-.+++|-+.
T Consensus 439 ~~~~~r~~t~~~~---------------------~~l~~~~~~~---~~p~~l~~~~~~~~~------------------ 476 (640)
T KOG1474|consen 439 ANENKRDMTAPEK---------------------AKLKELLQNL---LPPNKLESIVEILKP------------------ 476 (640)
T ss_pred ccccccccccccc---------------------ccchhhccCC---CCCccccCcccccch------------------
Confidence 1111111111111 1122222222 111111112222100
Q ss_pred CCCCCCCCcccccCCCCCccCcCCcccCCCCCcccccCCCCCCCcccccccccccccccCCCCCccc-ccccCCCCCCCC
Q 005609 477 SSSSSDSESDDVKASSPVSASKVPKVSGHKDKLDEKTGSGDPLDVNQSVSGLDQLEHTSQQKPSSVE-SDFRQDGESAPN 555 (688)
Q Consensus 477 S~SSssS~Sd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 555 (688)
......|.+.....+.....++ +++.. ++
T Consensus 477 ---------------------------------------------~~~~~~l~~~~~~~~~~~~~vd~~~~~~-----~~ 506 (640)
T KOG1474|consen 477 ---------------------------------------------EKRQLDLSQNDDEIELDLDSVDGSQSRE-----PS 506 (640)
T ss_pred ---------------------------------------------hhhcccccccccchhhcccccccccccC-----CC
Confidence 0000011111111111111111 11111 12
Q ss_pred CCCCCchhHHHHhhcccchhhhHHhhhh-cccc-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005609 556 ERQVSPDKLYRATLLKNRFADTILKAKE-KTLS-QGDKGDPEKLRREREELELQKRKEKARLQAEAKAAEEARRQAEADA 633 (688)
Q Consensus 556 ~~~~sp~k~~raa~l~~rfad~i~ka~~-k~l~-~~~~~dp~kl~~e~e~le~~~~~ekar~~a~~~aae~a~r~~~~~~ 633 (688)
.-+...++.+++..+...|++-+.+++. +.+. .....+|+++....++.+.+.+.++++.++.-..++.+++.+.+.+
T Consensus 507 ~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 586 (640)
T KOG1474|consen 507 SNPLEIETIRETLKLSTERELELSKASSSRSLMRNRSGSLPERLSRSISEEKLREKSEKSSSEASSSSSEDGENKAASSG 586 (640)
T ss_pred cccchhhhhhccccchhhHHHHHHHHhhhhhhccCcccccccchhhhhhHHhhhhhhHhhhhhhhhhhHHHHhhcccccc
Confidence 5567788999999999999999999998 6655 4666799999999999999999999999999999999998776444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc---cCCcccccchhhccccccee
Q 005609 634 AVEARRKREVEREAARQALLKVNSV---QMGSHLFLPRFLFWFSTEHF 678 (688)
Q Consensus 634 ~~e~k~~re~ereaar~al~~me~t---~~~~~~~~~~~~~~~~~~~~ 678 (688)
.. .++.++++|+++++|+..|+.+ +.+..+.--.-+.+..+++.
T Consensus 587 ~~-~~~s~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~~~~~ss~~~~~ 633 (640)
T KOG1474|consen 587 SL-SPSSSSLERESNNSAEANGSSSSESSSSSSSSSSEEGSSSPTESL 633 (640)
T ss_pred cc-CccccccccchhHHHHhcccCccccccccccchhhccCCCCCccc
Confidence 33 5677789999999999999999 44444433333344444444
No 2
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=4.5e-27 Score=217.79 Aligned_cols=106 Identities=37% Similarity=0.604 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcccccC
Q 005609 177 VILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYN 256 (688)
Q Consensus 177 ~~~~k~c~~IL~~L~~~~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN 256 (688)
..|.+.|..||..|++|+.+|+|..|||+. .+||||+||++||||+||++||.+|.|.++.+|..||+|||.||++||
T Consensus 4 ~~w~~~c~~il~~l~~~~~s~~F~~PVd~~--~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN 81 (119)
T cd05496 4 SDWKKQCKELVNLMWDCEDSEPFRQPVDLL--KYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYT 81 (119)
T ss_pred HHHHHHHHHHHHHHHhCCccccccCCCChh--hcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 579999999999999999999999999976 799999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHhhC
Q 005609 257 PP-GNDFHIMADTLRKFFEARWKAIEKKL 284 (688)
Q Consensus 257 ~~-~s~V~~~A~~L~~~Fe~~~k~ie~k~ 284 (688)
++ ++.||.+|..|+..|+++|+.|...+
T Consensus 82 ~~~~s~i~~~a~~L~~~F~~~~~~l~~~~ 110 (119)
T cd05496 82 PNKRSRIYSMTLRLSALFEEHIKKIISDW 110 (119)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 85 99999999999999999999986544
No 3
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=7.7e-27 Score=212.90 Aligned_cols=104 Identities=31% Similarity=0.539 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhccccc
Q 005609 177 VILMKQCETLLKRLMSH-QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTY 255 (688)
Q Consensus 177 ~~~~k~c~~IL~~L~~~-~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~Y 255 (688)
.++.+.|..+|.+|+++ +.+|+|..|||+...++||||++|++||||+||++||.+|.|.++.+|.+||+|||.||+.|
T Consensus 2 ~~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~y 81 (108)
T cd05495 2 EELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLY 81 (108)
T ss_pred HHHHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999 99999999999998899999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 005609 256 NPPGNDFHIMADTLRKFFEARWKAI 280 (688)
Q Consensus 256 N~~~s~V~~~A~~L~~~Fe~~~k~i 280 (688)
|+++|.+|.+|..|++.|++.++.+
T Consensus 82 N~~~s~i~~~a~~l~~~F~~~~~~~ 106 (108)
T cd05495 82 NRKTSRVYKYCTKLAEVFEQEIDPV 106 (108)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998865
No 4
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=9.1e-27 Score=212.11 Aligned_cols=101 Identities=43% Similarity=0.771 Sum_probs=95.5
Q ss_pred HHHH-HHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcccccCC
Q 005609 179 LMKQ-CETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNP 257 (688)
Q Consensus 179 ~~k~-c~~IL~~L~~~~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~ 257 (688)
.++. +..||..|++|+.+|+|..|||+.+.++||||+||++||||+||++||.+|.|.++.+|.+||+|||.||+.||+
T Consensus 5 q~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~ 84 (107)
T cd05497 5 QLQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNK 84 (107)
T ss_pred HHHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 3444 478899999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 005609 258 PGNDFHIMADTLRKFFEARWKA 279 (688)
Q Consensus 258 ~~s~V~~~A~~L~~~Fe~~~k~ 279 (688)
++|.||.+|..|++.|++++++
T Consensus 85 ~~s~i~~~A~~l~~~f~~~l~~ 106 (107)
T cd05497 85 PGDDVVLMAQTLEKLFLQKLAQ 106 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999998875
No 5
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=2.6e-26 Score=205.63 Aligned_cols=95 Identities=31% Similarity=0.578 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcccccCCCC
Q 005609 180 MKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPG 259 (688)
Q Consensus 180 ~k~c~~IL~~L~~~~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~~ 259 (688)
+++|..||+.|++++.+|+|..||++. .+||||++|++||||+||++||.+|.|.|+.+|.+||+|||.||++||+++
T Consensus 2 ~~~c~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05505 2 LQKCEEILSKILKYRFSWPFREPVTAD--EAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENG 79 (97)
T ss_pred HHHHHHHHHHHHhCCCcccccCCCChh--hcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 578999999999999999999999965 799999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 005609 260 NDFHIMADTLRKFFEAR 276 (688)
Q Consensus 260 s~V~~~A~~L~~~Fe~~ 276 (688)
+.|+.+|..|++.|.++
T Consensus 80 s~i~~~a~~le~~f~~~ 96 (97)
T cd05505 80 SYVLSCMRKTEQCCVNL 96 (97)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999865
No 6
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=4.4e-26 Score=204.27 Aligned_cols=99 Identities=66% Similarity=1.204 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcccccCCC
Q 005609 179 LMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPP 258 (688)
Q Consensus 179 ~~k~c~~IL~~L~~~~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~ 258 (688)
+++.|..||+.|++++.+++|..||++....+|+||++|++||||+||++||.++.|.++.+|..||+|||.||++||++
T Consensus 1 ~~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~ 80 (99)
T cd05506 1 VMKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPP 80 (99)
T ss_pred CHHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 37899999999999999999999999888889999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 005609 259 GNDFHIMADTLRKFFEARW 277 (688)
Q Consensus 259 ~s~V~~~A~~L~~~Fe~~~ 277 (688)
+|.+|.+|..|++.|+++|
T Consensus 81 ~s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 81 GNDVHTMAKELLKIFETRW 99 (99)
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999987
No 7
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=8.3e-26 Score=202.24 Aligned_cols=96 Identities=43% Similarity=0.799 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcccccCCCC
Q 005609 180 MKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPG 259 (688)
Q Consensus 180 ~k~c~~IL~~L~~~~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~~ 259 (688)
+..|..||..|++|+.+++|..||++. .+|+||++|++||||+||++||.+|.|.|+.+|..||+|||.||+.||+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~--~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05503 2 LALCETILDEMEAHEDAWPFLEPVNTK--LVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDD 79 (97)
T ss_pred HHHHHHHHHHHHcCCCchhhcCCCCcc--ccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 578999999999999999999999976 799999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 005609 260 NDFHIMADTLRKFFEARW 277 (688)
Q Consensus 260 s~V~~~A~~L~~~Fe~~~ 277 (688)
+.++.+|..|++.|+.+|
T Consensus 80 s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 80 SEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999999987
No 8
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=9.1e-26 Score=203.41 Aligned_cols=98 Identities=49% Similarity=0.897 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHcC---CCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcccccC
Q 005609 180 MKQCETLLKRLMSH---QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYN 256 (688)
Q Consensus 180 ~k~c~~IL~~L~~~---~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN 256 (688)
++.|..||+.|+++ +.+++|..||++....+||||++|++||||+||++||.+|.|.++.+|..||+|||.||+.||
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn 81 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYN 81 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 67899999999999 899999999999888899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 005609 257 PPGNDFHIMADTLRKFFEARW 277 (688)
Q Consensus 257 ~~~s~V~~~A~~L~~~Fe~~~ 277 (688)
+++|.++.+|..|+..|+++|
T Consensus 82 ~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 82 PPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999987
No 9
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.2e-25 Score=205.45 Aligned_cols=102 Identities=39% Similarity=0.728 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcccccC
Q 005609 177 VILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYN 256 (688)
Q Consensus 177 ~~~~k~c~~IL~~L~~~~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN 256 (688)
...+..|..||..|+.++.+|+|..||++. .+||||++|++||||+||++||.+|.|.|+.+|..||+|||.||++||
T Consensus 11 ~~~~~~c~~il~~l~~~~~s~~F~~pvd~~--~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~yN 88 (115)
T cd05504 11 PLNLSALEQLLVEIVKHKDSWPFLRPVSKI--EVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLYN 88 (115)
T ss_pred HHHHHHHHHHHHHHHhCCCchhhcCCCCcc--ccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 567899999999999999999999999954 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 005609 257 PPGNDFHIMADTLRKFFEARWKAI 280 (688)
Q Consensus 257 ~~~s~V~~~A~~L~~~Fe~~~k~i 280 (688)
++++.+|.+|..|+.+|++.|+.+
T Consensus 89 ~~~s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 89 PEHTSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999876
No 10
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.5e-25 Score=201.70 Aligned_cols=101 Identities=31% Similarity=0.460 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcccccC
Q 005609 177 VILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYN 256 (688)
Q Consensus 177 ~~~~k~c~~IL~~L~~~~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN 256 (688)
..|.+.|..||..|++|+.+++|..||++. .+||||++|++||||+||++||.+|.|.++.+|..||+|||.||++||
T Consensus 2 ~~~~~~~~~il~~l~~~~~a~~F~~pV~~~--~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 79 (104)
T cd05507 2 RAWKKAILLVYRTLASHRYASVFLKPVTED--IAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYN 79 (104)
T ss_pred hHHHHHHHHHHHHHHcCCCCHhhcCCCCcc--ccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 368999999999999999999999999964 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 005609 257 PPGNDFHIMADTLRKFFEARWKA 279 (688)
Q Consensus 257 ~~~s~V~~~A~~L~~~Fe~~~k~ 279 (688)
++++.||.+|..|+..|...+..
T Consensus 80 ~~~s~v~~~A~~l~~~~~~~~~~ 102 (104)
T cd05507 80 SSDHDVYLMAVEMQREVMSQIQQ 102 (104)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999887653
No 11
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.1e-25 Score=201.20 Aligned_cols=98 Identities=48% Similarity=0.925 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHcC---CCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcccccC
Q 005609 180 MKQCETLLKRLMSH---QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYN 256 (688)
Q Consensus 180 ~k~c~~IL~~L~~~---~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN 256 (688)
++.|..||..|+++ +.+++|..|||+.+..+||||++|++||||+||++||.++.|.++.+|..||+|||.||+.||
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn 81 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFN 81 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 57899999999994 579999999999888999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 005609 257 PPGNDFHIMADTLRKFFEARW 277 (688)
Q Consensus 257 ~~~s~V~~~A~~L~~~Fe~~~ 277 (688)
+++|.+|.+|..|++.|+++|
T Consensus 82 ~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 82 PEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999886
No 12
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=3.5e-25 Score=200.23 Aligned_cols=100 Identities=40% Similarity=0.555 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcccccC
Q 005609 177 VILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYN 256 (688)
Q Consensus 177 ~~~~k~c~~IL~~L~~~~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN 256 (688)
..+.+.|..||+.|++++.+++|..|||+.+.++||||++|++||||+||++||.+|.|.++.+|..||+|||.||+.||
T Consensus 3 ~~~~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN 82 (103)
T cd05500 3 KHQHKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTFN 82 (103)
T ss_pred HHHHHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 46789999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 005609 257 PPGNDFHIMADTLRKFFEAR 276 (688)
Q Consensus 257 ~~~s~V~~~A~~L~~~Fe~~ 276 (688)
+++|.++.+|..|++.|++.
T Consensus 83 ~~~s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 83 GPEHPVSQMGKRLQAAFEKH 102 (103)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999875
No 13
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=6.9e-25 Score=197.60 Aligned_cols=97 Identities=30% Similarity=0.446 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcccccCCC
Q 005609 179 LMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPP 258 (688)
Q Consensus 179 ~~k~c~~IL~~L~~~~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~ 258 (688)
.++.|+.||..|++++.+++|..+ |. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||++
T Consensus 3 ~l~~ce~il~~l~~~~~s~~f~~~--p~--~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~ 78 (102)
T cd05501 3 ELLKCEFLLLKVYCMSKSGFFISK--PY--YIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKD 78 (102)
T ss_pred HHHHHHHHHHHHHhCcccccccCC--CC--CCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 467799999999999999999664 33 79999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 005609 259 GNDFHIMADTLRKFFEARWKAI 280 (688)
Q Consensus 259 ~s~V~~~A~~L~~~Fe~~~k~i 280 (688)
+ .++.+|..|++.|++.|+.+
T Consensus 79 ~-~~~~~a~~L~~~Fek~~~~~ 99 (102)
T cd05501 79 D-DFGQVGITLEKKFEKNFKEV 99 (102)
T ss_pred C-HHHHHHHHHHHHHHHHHHHH
Confidence 9 99999999999999999875
No 14
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=9.5e-25 Score=199.34 Aligned_cols=101 Identities=41% Similarity=0.721 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhc---CCCCCHHHHHHHHHhhhhccc
Q 005609 177 VILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMAS---NAYSSPLEFLADVRLTFSNAM 253 (688)
Q Consensus 177 ~~~~k~c~~IL~~L~~~~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~---~~Y~S~~eF~~DvrLIF~NA~ 253 (688)
...++.|..||..|++|+.+++|..||++ .+|+||++|++||||+||++||+. |.|.++.+|.+||+|||.||+
T Consensus 3 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~---~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~ 79 (109)
T cd05502 3 PIDQRKCERLLLELYCHELSLPFHEPVSP---SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCY 79 (109)
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCCCCC---CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999996 699999999999999999999999 699999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 005609 254 TYNPPGNDFHIMADTLRKFFEARWKAI 280 (688)
Q Consensus 254 ~YN~~~s~V~~~A~~L~~~Fe~~~k~i 280 (688)
.||+++|.++.+|..|++.|++.|+.+
T Consensus 80 ~yN~~~s~i~~~a~~l~~~f~~~~~~~ 106 (109)
T cd05502 80 KFNEEDSEVAQAGKELELFFEEQLKEI 106 (109)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999876
No 15
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.3e-24 Score=199.53 Aligned_cols=102 Identities=31% Similarity=0.466 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhccccc
Q 005609 177 VILMKQCETLLKRLMSH-QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTY 255 (688)
Q Consensus 177 ~~~~k~c~~IL~~L~~~-~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~Y 255 (688)
.++...|..||..|++| +.+++|..||++. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||+.|
T Consensus 6 ~~~~~~~~~il~~l~~~~~~s~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~y 83 (112)
T cd05510 6 EEFYESLDKVLNELKTYTEHSTPFLTKVSKR--EAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLY 83 (112)
T ss_pred HHHHHHHHHHHHHHHhcCccccchhcCCChh--hcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999 8999999999965 89999999999999999999999999999999999999999999999
Q ss_pred CCCCC-HHHHHHHHHHHHHHHHHHHH
Q 005609 256 NPPGN-DFHIMADTLRKFFEARWKAI 280 (688)
Q Consensus 256 N~~~s-~V~~~A~~L~~~Fe~~~k~i 280 (688)
|++++ .++.+|..|++.|+..+..|
T Consensus 84 N~~~s~~~~~~A~~l~~~~~~~~~~~ 109 (112)
T cd05510 84 NSDPSHPLRRHANFMKKKAEHLLKLI 109 (112)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 99866 67899999999999988765
No 16
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=9.9e-25 Score=196.31 Aligned_cols=99 Identities=39% Similarity=0.708 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcccccCCC
Q 005609 179 LMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPP 258 (688)
Q Consensus 179 ~~k~c~~IL~~L~~~~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~ 258 (688)
+..+|..||..|++|+.+++|..||++. .+|+||++|++||||+||++||.+|.|.++.+|..||+|||.||++||++
T Consensus 2 ~~~~~~~il~~l~~~~~a~~F~~pv~~~--~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~ 79 (101)
T cd05509 2 LYTQLKKVLDSLKNHKSAWPFLEPVDKE--EAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGP 79 (101)
T ss_pred hHHHHHHHHHHHHhCCCchhhcCCCChh--hcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 5789999999999999999999999976 69999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 005609 259 GNDFHIMADTLRKFFEARWKA 279 (688)
Q Consensus 259 ~s~V~~~A~~L~~~Fe~~~k~ 279 (688)
++.++.+|..|+..|++.+++
T Consensus 80 ~s~~~~~a~~l~~~f~~~~~~ 100 (101)
T cd05509 80 DTEYYKCANKLEKFFWKKLKE 100 (101)
T ss_pred CCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999998875
No 17
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.3e-24 Score=195.29 Aligned_cols=97 Identities=30% Similarity=0.434 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcccccC
Q 005609 177 VILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYN 256 (688)
Q Consensus 177 ~~~~k~c~~IL~~L~~~~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN 256 (688)
.++...+..++..|+ |+.+|+|..||++. .+||||.+|++||||+||++||.+|.|.++++|.+||+|||.||++||
T Consensus 2 ~~l~~~L~~~~~~~~-~~~s~~F~~PV~~~--~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN 78 (99)
T cd05508 2 DQLSKLLKFALERMK-QPGAEPFLKPVDLE--QFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYN 78 (99)
T ss_pred hHHHHHHHHHHHHHh-CcCcchhcCCCChh--hCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 356677888899999 99999999999975 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 005609 257 PPGNDFHIMADTLRKFFEAR 276 (688)
Q Consensus 257 ~~~s~V~~~A~~L~~~Fe~~ 276 (688)
+++|.++.+|..|.+.|+..
T Consensus 79 ~~~s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 79 GGDHKLTQAAKAIVKICEQE 98 (99)
T ss_pred CCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999998753
No 18
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=4.7e-24 Score=191.40 Aligned_cols=93 Identities=40% Similarity=0.534 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcccccCCC
Q 005609 179 LMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPP 258 (688)
Q Consensus 179 ~~k~c~~IL~~L~~~~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~ 258 (688)
+...|..||+.|+.++.+++|..||++. .+||||++|++||||+||++||+++.|.++.+|..||+|||.||++||++
T Consensus 2 l~~~l~~il~~l~~~~~~~~F~~PV~~~--~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 79 (98)
T cd05513 2 LQKALEQLIRQLQRKDPHGFFAFPVTDF--IAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKP 79 (98)
T ss_pred HHHHHHHHHHHHHcCCccccccCcCCcc--ccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 5678999999999999999999999964 79999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 005609 259 GNDFHIMADTLRKFF 273 (688)
Q Consensus 259 ~s~V~~~A~~L~~~F 273 (688)
+|.+|.+|..|...-
T Consensus 80 ~s~~~~~A~~L~~~~ 94 (98)
T cd05513 80 DTIYYKAAKKLLHSG 94 (98)
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999997643
No 19
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=5.2e-24 Score=194.01 Aligned_cols=99 Identities=26% Similarity=0.412 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHcCCC------CCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcc
Q 005609 179 LMKQCETLLKRLMSHQY------GWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNA 252 (688)
Q Consensus 179 ~~k~c~~IL~~L~~~~~------a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA 252 (688)
+.++|..||+.|+++.. +++|..||+. ..+||||++|++||||+||++||.+|.|.++.+|..||.|||.||
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~--~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na 79 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSR--KELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNA 79 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCc--ccCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 57889999999999866 8999999874 489999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHH
Q 005609 253 MTYNPPGNDFHIMADTLRKFFEARWKA 279 (688)
Q Consensus 253 ~~YN~~~s~V~~~A~~L~~~Fe~~~k~ 279 (688)
++||++||.||.+|..|+++|++.+..
T Consensus 80 ~~yN~~~s~i~~~a~~l~~~f~~~~~~ 106 (107)
T cd05516 80 QTFNLEGSLIYEDSIVLQSVFKSARQK 106 (107)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998764
No 20
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=8.6e-24 Score=189.72 Aligned_cols=92 Identities=34% Similarity=0.535 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcccccCCC
Q 005609 179 LMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPP 258 (688)
Q Consensus 179 ~~k~c~~IL~~L~~~~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~ 258 (688)
+...|+.+|..|+.|+.+++|..|||+. .+||||++|++||||+||++||.++.|.++.+|..||+|||.||+.||++
T Consensus 2 ~~~~l~~il~~l~~~~~~~~F~~pVd~~--~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 79 (98)
T cd05512 2 LEVLLRKTLDQLQEKDTAEIFSEPVDLS--EVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAK 79 (98)
T ss_pred HHHHHHHHHHHHHhCCCchhhcCCCCcc--ccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4567899999999999999999999965 79999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 005609 259 GNDFHIMADTLRKF 272 (688)
Q Consensus 259 ~s~V~~~A~~L~~~ 272 (688)
++.+|.+|..|++.
T Consensus 80 ~s~~~~~A~~l~~~ 93 (98)
T cd05512 80 DTIFYRAAVRLRDQ 93 (98)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999875
No 21
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.89 E-value=1.8e-23 Score=191.99 Aligned_cols=101 Identities=38% Similarity=0.523 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcccccCC
Q 005609 178 ILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNP 257 (688)
Q Consensus 178 ~~~k~c~~IL~~L~~~~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~ 257 (688)
++...|..|+++|+.|+.+++|..|||+. .+||||++|++||||+||++||.++.|.|+.+|.+||+|||.||+.||+
T Consensus 3 ~lr~~L~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~ 80 (112)
T cd05528 3 ELRLFLRDVLKRLASDKRFNAFTKPVDEE--EVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNP 80 (112)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCcc--ccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCC
Confidence 56778899999999999999999999976 7999999999999999999999999999999999999999999999999
Q ss_pred C----CCHHHHHHHHHHHHHHHHHHHH
Q 005609 258 P----GNDFHIMADTLRKFFEARWKAI 280 (688)
Q Consensus 258 ~----~s~V~~~A~~L~~~Fe~~~k~i 280 (688)
+ |+.++.+|..|++.|..++..+
T Consensus 81 ~~s~~~s~i~~~A~~L~~~~~~~~~~~ 107 (112)
T cd05528 81 DRDPADKLIRSRACELRDEVHAMIEAE 107 (112)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHhc
Confidence 9 4799999999999999988764
No 22
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=1.5e-23 Score=192.52 Aligned_cols=101 Identities=35% Similarity=0.614 Sum_probs=96.3
Q ss_pred HHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcccccCCCCCH
Q 005609 182 QCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGND 261 (688)
Q Consensus 182 ~c~~IL~~L~~~~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~~s~ 261 (688)
.+..|+.+|++|+.+++|..||++. .+|+||++|++||||+||++||.++.|.++.+|.+||+|||.||+.||+++|.
T Consensus 4 ~l~~ii~~l~~~~~s~~F~~pv~~~--~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~ 81 (112)
T cd05511 4 ILDEIVNELKNLPDSWPFHTPVNKK--KVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDSV 81 (112)
T ss_pred HHHHHHHHHHhCCCchhhcCCCChh--hcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 4678999999999999999999976 79999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Q 005609 262 FHIMADTLRKFFEARWKAIEKKL 284 (688)
Q Consensus 262 V~~~A~~L~~~Fe~~~k~ie~k~ 284 (688)
++.+|..|...|+..+..+++++
T Consensus 82 i~~~A~~l~~~~~~~~~~~~~~~ 104 (112)
T cd05511 82 YTKKAKEMLELAEELLAEREEKL 104 (112)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999887654
No 23
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=4.9e-23 Score=186.25 Aligned_cols=96 Identities=31% Similarity=0.475 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHcC------CCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhccc
Q 005609 180 MKQCETLLKRLMSH------QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAM 253 (688)
Q Consensus 180 ~k~c~~IL~~L~~~------~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~ 253 (688)
.+.|..|++.|+++ +.+++|..||+ +..+||||++|++||||+||++||.+|.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~--~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~ 79 (103)
T cd05519 2 KAAMLEIYDAVLNCEDETGRKLSELFLEKPS--KKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANAR 79 (103)
T ss_pred HHHHHHHHHHHHHhcCcCCCchhHHhcCCCC--CCCCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 57899999999954 56899999977 55899999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHH
Q 005609 254 TYNPPGNDFHIMADTLRKFFEARW 277 (688)
Q Consensus 254 ~YN~~~s~V~~~A~~L~~~Fe~~~ 277 (688)
.||++++.+|.+|..|++.|+.+|
T Consensus 80 ~yn~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 80 TYNQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999998764
No 24
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=6.4e-23 Score=186.22 Aligned_cols=97 Identities=29% Similarity=0.448 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHcC------CCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhccc
Q 005609 180 MKQCETLLKRLMSH------QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAM 253 (688)
Q Consensus 180 ~k~c~~IL~~L~~~------~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~ 253 (688)
+++|..|+..|..+ +.+++|..||+ +..+||||++|++||||+||++||.++.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~--~~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~ 79 (105)
T cd05515 2 QQKLWELYNAVKNYTDGRGRRLSLIFMRLPS--KSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNAC 79 (105)
T ss_pred hHHHHHHHHHHHHhhCcCCCcccHHhccCCC--cccCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 56788888888875 56899999977 45899999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHH
Q 005609 254 TYNPPGNDFHIMADTLRKFFEARWK 278 (688)
Q Consensus 254 ~YN~~~s~V~~~A~~L~~~Fe~~~k 278 (688)
+||+++|.+|.+|..|+++|.+..+
T Consensus 80 ~yN~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 80 KYNEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999987653
No 25
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=1e-22 Score=187.34 Aligned_cols=100 Identities=23% Similarity=0.391 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHcC------CCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcc
Q 005609 179 LMKQCETLLKRLMSH------QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNA 252 (688)
Q Consensus 179 ~~k~c~~IL~~L~~~------~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA 252 (688)
..+.|..|+..|+++ +.+.+|..+++ +..+||||++|++||||+||++||.++.|.++.+|..||+|||.||
T Consensus 3 ~~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~--~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na 80 (113)
T cd05524 3 PIAVCQELYDTIRNYKSEDGRILCESFIRVPK--RRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNA 80 (113)
T ss_pred HHHHHHHHHHHHHhhcccCCCchhHHHhcCCC--cccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHH
Confidence 368899999999975 44578998855 6699999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 005609 253 MTYNPPGNDFHIMADTLRKFFEARWKAI 280 (688)
Q Consensus 253 ~~YN~~~s~V~~~A~~L~~~Fe~~~k~i 280 (688)
+.||++++.+|.+|..|+++|++.++.+
T Consensus 81 ~~yN~~~s~~~~~A~~L~~~f~~~~~~~ 108 (113)
T cd05524 81 KAYYKPDSPEHKDACKLWELFLSARNEV 108 (113)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998876
No 26
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=3.5e-22 Score=187.51 Aligned_cols=104 Identities=27% Similarity=0.368 Sum_probs=98.1
Q ss_pred CCcHHHHHHHHHHHHHHH---cCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhh
Q 005609 174 TGNVILMKQCETLLKRLM---SHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFS 250 (688)
Q Consensus 174 ~~~~~~~k~c~~IL~~L~---~~~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~ 250 (688)
.....+...|..+|.+|+ .++.+++|..||++.. .+|+||++|++||||+||++||.++.|.++.+|..||+|||.
T Consensus 20 ~~~~~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~-~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~ 98 (128)
T cd05529 20 HIRDEERERLISGLDKLLLSLQLEIAEYFEYPVDLRA-WYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILS 98 (128)
T ss_pred CCCHHHHHHHHHHHHHHHhcccCcccccccCCCCccc-cCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 456788999999999999 8999999999999654 799999999999999999999999999999999999999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHH
Q 005609 251 NAMTYNPPGNDFHIMADTLRKFFEARWK 278 (688)
Q Consensus 251 NA~~YN~~~s~V~~~A~~L~~~Fe~~~k 278 (688)
||++||++++.++.+|..|+..|...+.
T Consensus 99 Na~~yN~~~s~i~~~A~~l~~~~~~~l~ 126 (128)
T cd05529 99 NAETFNEPNSEIAKKAKRLSDWLLRILS 126 (128)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998765
No 27
>smart00297 BROMO bromo domain.
Probab=99.87 E-value=4e-22 Score=179.74 Aligned_cols=102 Identities=46% Similarity=0.727 Sum_probs=97.0
Q ss_pred cHHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhccccc
Q 005609 176 NVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTY 255 (688)
Q Consensus 176 ~~~~~k~c~~IL~~L~~~~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~Y 255 (688)
...+...|..|+..+.+|+.+++|..||++. .+|+||.+|++||||++|++||.+|.|.++.+|..||+|||.||+.|
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~--~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~ 82 (107)
T smart00297 5 QKKLQSLLKAVLDKLDSHRLSWPFLKPVDRK--EAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTY 82 (107)
T ss_pred HHHHHHHHHHHHHHHHhCccchhhccCCChh--hccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999999999999865 69999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Q 005609 256 NPPGNDFHIMADTLRKFFEARWKA 279 (688)
Q Consensus 256 N~~~s~V~~~A~~L~~~Fe~~~k~ 279 (688)
|++++.++.+|..|...|+..|++
T Consensus 83 n~~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 83 NGPDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999875
No 28
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.86 E-value=4e-22 Score=180.46 Aligned_cols=94 Identities=33% Similarity=0.529 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHcC------CCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhccc
Q 005609 180 MKQCETLLKRLMSH------QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAM 253 (688)
Q Consensus 180 ~k~c~~IL~~L~~~------~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~ 253 (688)
.+.|..|+..|+.+ +.+++|..+++ +..+||||++|++||||+||++||.++.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~--~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~ 79 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPS--KVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAK 79 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCC--CCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHH
Confidence 46789999999986 45799999966 55999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHH
Q 005609 254 TYNPPGNDFHIMADTLRKFFEA 275 (688)
Q Consensus 254 ~YN~~~s~V~~~A~~L~~~Fe~ 275 (688)
+||+++|.+|.+|..|++.|+.
T Consensus 80 ~yN~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 80 TFNEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999975
No 29
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.86 E-value=4.4e-22 Score=180.19 Aligned_cols=91 Identities=30% Similarity=0.451 Sum_probs=82.2
Q ss_pred HHHHHHHHcC------CCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcccccCC
Q 005609 184 ETLLKRLMSH------QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNP 257 (688)
Q Consensus 184 ~~IL~~L~~~------~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~ 257 (688)
..|++.|+.+ +.+++|..||+ +..+||||++|++||||+||++||.+|.|.++.+|..||+|||.||++||+
T Consensus 6 ~~l~~~i~~~~~~~g~~~s~pF~~~p~--~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~ 83 (103)
T cd05520 6 WQLYDTIRNARNNQGQLLAEPFLKLPS--KRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNV 83 (103)
T ss_pred HHHHHHHHhhcCCCCCCccHhhhcCCC--cccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 4455555554 57899999977 558999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 005609 258 PGNDFHIMADTLRKFFEAR 276 (688)
Q Consensus 258 ~~s~V~~~A~~L~~~Fe~~ 276 (688)
++|.+|.+|..|+++|+++
T Consensus 84 ~~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 84 PNSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999864
No 30
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=6.1e-22 Score=180.17 Aligned_cols=96 Identities=24% Similarity=0.351 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHcC------CCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcc
Q 005609 179 LMKQCETLLKRLMSH------QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNA 252 (688)
Q Consensus 179 ~~k~c~~IL~~L~~~------~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA 252 (688)
+...|..||+.|..+ ..+++|..+++ +..+||||++|++||||+||++||.+|.|.++.+|..||.|||.||
T Consensus 3 l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~--k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na 80 (106)
T cd05525 3 LAQVLKEICDAIITYKDSNGQSLAIPFINLPS--KKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNA 80 (106)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccHhhccCCC--cccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 456788888888875 45799999965 6799999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHH
Q 005609 253 MTYNPPGNDFHIMADTLRKFFEAR 276 (688)
Q Consensus 253 ~~YN~~~s~V~~~A~~L~~~Fe~~ 276 (688)
+.||+++|.+|.+|..|+++|++.
T Consensus 81 ~~yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 81 EKYYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999863
No 31
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.86 E-value=5.5e-22 Score=179.58 Aligned_cols=94 Identities=29% Similarity=0.490 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHcC------CCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcccc
Q 005609 181 KQCETLLKRLMSH------QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMT 254 (688)
Q Consensus 181 k~c~~IL~~L~~~------~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~ 254 (688)
+++..|+..|... ..+.+|..+|+ +..+||||++|++||||+||++||.++.|.++.+|..||+|||.||+.
T Consensus 3 ~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~--~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 80 (103)
T cd05518 3 KRMLALFLYVLEYREGSGRRLCDLFMEKPS--KKDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARH 80 (103)
T ss_pred HHHHHHHHHHHHhhccCCCcccHHHhcCCC--cccCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4566666666654 56889999977 458999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 005609 255 YNPPGNDFHIMADTLRKFFEAR 276 (688)
Q Consensus 255 YN~~~s~V~~~A~~L~~~Fe~~ 276 (688)
||+++|.||.+|..|+++|+++
T Consensus 81 yN~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 81 YNEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999863
No 32
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.84 E-value=5.6e-21 Score=164.98 Aligned_cols=84 Identities=46% Similarity=0.781 Sum_probs=79.2
Q ss_pred HHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcccccCCCCCHH
Q 005609 183 CETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDF 262 (688)
Q Consensus 183 c~~IL~~L~~~~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~~s~V 262 (688)
|..||..|++|+.+++|..||++. .+|+|+.+|++||||.+|++||.+|.|.++.+|..||++||.||+.||++++.+
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~--~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~ 78 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPK--EYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPI 78 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTT--TSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChh--hCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHH
Confidence 899999999999999999999755 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 005609 263 HIMADT 268 (688)
Q Consensus 263 ~~~A~~ 268 (688)
|.+|.+
T Consensus 79 ~~~A~~ 84 (84)
T PF00439_consen 79 YKAAEK 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999974
No 33
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.83 E-value=7.9e-21 Score=166.32 Aligned_cols=96 Identities=46% Similarity=0.645 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHcC--CCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcccccCC
Q 005609 180 MKQCETLLKRLMSH--QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNP 257 (688)
Q Consensus 180 ~k~c~~IL~~L~~~--~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~ 257 (688)
...|..|+..|+.+ +.+++|..||++. .+|+||.+|++||||++|+.||.+|.|.++.+|.+||+|||.||+.||+
T Consensus 2 ~~~~~~i~~~l~~~~~~~~~~F~~~~~~~--~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~ 79 (99)
T cd04369 2 KKKLRSLLDALKKLKRDLSEPFLEPVDPK--EAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNG 79 (99)
T ss_pred HHHHHHHHHHHHhhcccccHHHhcCCChh--cCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 46799999999999 9999999999864 7999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 005609 258 PGNDFHIMADTLRKFFEARW 277 (688)
Q Consensus 258 ~~s~V~~~A~~L~~~Fe~~~ 277 (688)
.++.++.+|..|...|++.|
T Consensus 80 ~~~~~~~~a~~l~~~~~~~~ 99 (99)
T cd04369 80 PGSPIYKDAKKLEKLFEKLL 99 (99)
T ss_pred CCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999998754
No 34
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.83 E-value=1.8e-20 Score=169.92 Aligned_cols=95 Identities=27% Similarity=0.318 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHc---CCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcccccC
Q 005609 180 MKQCETLLKRLMS---HQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYN 256 (688)
Q Consensus 180 ~k~c~~IL~~L~~---~~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN 256 (688)
++.+...|..+.. ++.+++|..+|+.. .+||||++|++||||+||++||.++.|.++.+|..||+|||.||+.||
T Consensus 6 ~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~--~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn 83 (104)
T cd05522 6 IKNILKGLRKERDENGRLLTLHFEKLPDKA--REPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLYN 83 (104)
T ss_pred HHHHHHHHHHHhCcCCCcccHHHhcCCCcc--ccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 3444444444443 46899999998744 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 005609 257 PPGNDFHIMADTLRKFFEAR 276 (688)
Q Consensus 257 ~~~s~V~~~A~~L~~~Fe~~ 276 (688)
++++.+|.+|..|++.|+..
T Consensus 84 ~~~s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 84 ENDSQEYKDAVLLEKEARLL 103 (104)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999863
No 35
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.83 E-value=1.7e-20 Score=170.71 Aligned_cols=95 Identities=28% Similarity=0.444 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHcCC------CCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcc
Q 005609 179 LMKQCETLLKRLMSHQ------YGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNA 252 (688)
Q Consensus 179 ~~k~c~~IL~~L~~~~------~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA 252 (688)
+.++|..|+..|+... .+.+|..+++ +..+||||++|++||||+||++||.+ |.++.+|..||.|||.||
T Consensus 2 l~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~--~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na 77 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEENGIEIHPIFNVLPL--RKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNA 77 (106)
T ss_pred HHHHHHHHHHHHHhhcCcCCCCchHhhhcCCc--cccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHH
Confidence 4577899999998763 4568987755 66899999999999999999999998 999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHH
Q 005609 253 MTYNPPGNDFHIMADTLRKFFEARW 277 (688)
Q Consensus 253 ~~YN~~~s~V~~~A~~L~~~Fe~~~ 277 (688)
+.||++++.+|.+|..|+++|..++
T Consensus 78 ~~yN~~~s~i~~~A~~le~~~~~~~ 102 (106)
T cd05521 78 RLYNTKGSVIYKYALILEKYINDVI 102 (106)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999998865
No 36
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.82 E-value=4.6e-20 Score=168.39 Aligned_cols=98 Identities=20% Similarity=0.192 Sum_probs=87.6
Q ss_pred HHHHHHHHc-CCCCCCCCCCcc---ccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcccccCCCC
Q 005609 184 ETLLKRLMS-HQYGWVFNTPVD---VVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPG 259 (688)
Q Consensus 184 ~~IL~~L~~-~~~a~~F~~PVD---~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~~ 259 (688)
..++..+.+ -+..++|..||. +.+.++|+||.+|++||||+||++||.+|.|+++.+|.+||.|||+||+.||+++
T Consensus 6 ~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~~ 85 (109)
T cd05492 6 KFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGAD 85 (109)
T ss_pred HHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 445566666 466799999997 4445699999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q 005609 260 NDFHIMADTLRKFFEARWKAIE 281 (688)
Q Consensus 260 s~V~~~A~~L~~~Fe~~~k~ie 281 (688)
|.+|.+|..|.......+.+|.
T Consensus 86 s~~~~~A~~l~~d~~~el~Ei~ 107 (109)
T cd05492 86 SEQYDAARWLYRDTCHDLRELR 107 (109)
T ss_pred CHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998888774
No 37
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.69 E-value=5.7e-17 Score=148.02 Aligned_cols=100 Identities=19% Similarity=0.197 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHcCC------CCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhc
Q 005609 178 ILMKQCETLLKRLMSHQ------YGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSN 251 (688)
Q Consensus 178 ~~~k~c~~IL~~L~~~~------~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~N 251 (688)
.+.+.+..|+..+++|. ++.+|.+.+. ..|+||.+|+.||||++|++||.+|.|.++++|..||.|||.|
T Consensus 3 ~vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~----~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~N 78 (110)
T cd05526 3 LVQELLATLFVSVMNHQDEEGRCYSDSLAELPE----LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLER 78 (110)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCchHHHHHCCC----cccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHH
Confidence 35677889999999984 4778877733 4688999999999999999999999999999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005609 252 AMTYNPPGNDFHIMADTLRKFFEARWKAIE 281 (688)
Q Consensus 252 A~~YN~~~s~V~~~A~~L~~~Fe~~~k~ie 281 (688)
|++||.+||.+|.+|..|+.+|......+.
T Consensus 79 Ar~yN~~~S~iy~dA~eLq~~f~~~rd~~~ 108 (110)
T cd05526 79 ARRLSRTDSEIYEDAVELQQFFIKIRDELC 108 (110)
T ss_pred HHHhCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998877663
No 38
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.67 E-value=7.9e-17 Score=176.10 Aligned_cols=104 Identities=32% Similarity=0.460 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHcC------CCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhh
Q 005609 177 VILMKQCETLLKRLMSH------QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFS 250 (688)
Q Consensus 177 ~~~~k~c~~IL~~L~~~------~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~ 250 (688)
..+.+.|..++..+... ...++|..+|+ +..+|+||.||+.||||++|+++|..+.|.++++|..|+.|||.
T Consensus 141 ~~~~~~~~~i~~~~~~~~~~~~~~~s~~F~~~p~--k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~ 218 (371)
T COG5076 141 ELLYADNKAIAKFKKQLFLRDGRFLSSIFLGLPS--KREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFD 218 (371)
T ss_pred hhHHHHHHHHHHHHHHhhcccccccccccccCCc--cccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 33445555555444432 56888988866 77999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 005609 251 NAMTYNPPGNDFHIMADTLRKFFEARWKAIEK 282 (688)
Q Consensus 251 NA~~YN~~~s~V~~~A~~L~~~Fe~~~k~ie~ 282 (688)
||.+||.+++.||.+|..|++.|...+..+..
T Consensus 219 N~~~yN~~~s~v~~~a~~l~~~~~~~i~~~~~ 250 (371)
T COG5076 219 NCKLYNGPDSSVYVDAKELEKYFLKLIEEIPE 250 (371)
T ss_pred hhhhccCCCcchhhhhHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999987644
No 39
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.65 E-value=7.9e-17 Score=197.58 Aligned_cols=95 Identities=43% Similarity=0.864 Sum_probs=92.1
Q ss_pred HHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcccccCCCCCHH
Q 005609 183 CETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDF 262 (688)
Q Consensus 183 c~~IL~~L~~~~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~~s~V 262 (688)
|..||..|+.|..+|||+.||++. .+||||+||++||||.||+.||..|.|.++.+|..||.|||.||.+||.. +.+
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~--~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i 1382 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPK--EVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEI 1382 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChh--hcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhh
Confidence 899999999999999999999966 89999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005609 263 HIMADTLRKFFEARWKAI 280 (688)
Q Consensus 263 ~~~A~~L~~~Fe~~~k~i 280 (688)
+..+..|..+|...|...
T Consensus 1383 ~~ag~~l~~ff~~~~~~~ 1400 (1404)
T KOG1245|consen 1383 GRAGTCLRRFFHKRWRKK 1400 (1404)
T ss_pred hhhcchHHHHHHHHHHhh
Confidence 999999999999988754
No 40
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.42 E-value=1.3e-13 Score=158.40 Aligned_cols=101 Identities=34% Similarity=0.643 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcccccCC
Q 005609 178 ILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNP 257 (688)
Q Consensus 178 ~~~k~c~~IL~~L~~~~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~ 257 (688)
.+......||..|.+|..+|+|.+||+.. ++||||.+|++||||.||+.+|..+.|..+..|++|+.+||.||+.||+
T Consensus 606 ~~~s~~~~il~~l~~h~~awPf~~Pv~~~--e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~ 683 (720)
T KOG1472|consen 606 KLFSAIQNILDQLQNHGDAWPFLKPVNKK--EVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNG 683 (720)
T ss_pred hhhHHHHhHHhhhhcCCccCCccCccccc--cCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCC
Confidence 45667889999999999999999999955 9999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 005609 258 PGNDFHIMADTLRKFFEARWKAI 280 (688)
Q Consensus 258 ~~s~V~~~A~~L~~~Fe~~~k~i 280 (688)
.++..|+.|..|...|...++..
T Consensus 684 ~~~~y~k~~~~le~~~~~k~~~~ 706 (720)
T KOG1472|consen 684 SDTQYYKCAQALEKFFLFKLNEL 706 (720)
T ss_pred ccchheecccchhhhhcchhhhh
Confidence 99999999999999998877764
No 41
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.36 E-value=5.7e-13 Score=123.03 Aligned_cols=81 Identities=22% Similarity=0.258 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcC-------CCCCHHHHHHHHHhhhh
Q 005609 178 ILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASN-------AYSSPLEFLADVRLTFS 250 (688)
Q Consensus 178 ~~~k~c~~IL~~L~~~~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~-------~Y~S~~eF~~DvrLIF~ 250 (688)
+.+..|..+|..++.++.+|+|..|||+.+..+||||++|++||||+||+++|.++ .|.--..+.+++..++.
T Consensus 3 e~~~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (114)
T cd05494 3 EALERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEG 82 (114)
T ss_pred HHHHHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHcccccccccccccccccccccccccc
Confidence 45778889999999999999999999997789999999999999999999999997 45555566777777777
Q ss_pred cccccCCC
Q 005609 251 NAMTYNPP 258 (688)
Q Consensus 251 NA~~YN~~ 258 (688)
||..||..
T Consensus 83 ~~~~~~~~ 90 (114)
T cd05494 83 RRSPSNIY 90 (114)
T ss_pred ccCccccc
Confidence 77777654
No 42
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.98 E-value=5.2e-10 Score=133.87 Aligned_cols=102 Identities=33% Similarity=0.467 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcccccC
Q 005609 177 VILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYN 256 (688)
Q Consensus 177 ~~~~k~c~~IL~~L~~~~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN 256 (688)
.+..+.+..+|..|.......+|..|||+. .+|||+++|++||||.|++.++.++.|.++++|.+|+.||..||+.||
T Consensus 564 ~p~~kLl~~~l~~lq~kD~~gif~~pvd~~--e~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~yn 641 (1051)
T KOG0955|consen 564 NPFKKLLQKSLDKLQKKDSYGIFAEPVDPS--ELPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEYN 641 (1051)
T ss_pred chHHHHHHHHHHHhhcccccCceeeccChh--hcccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHhh
Confidence 456777889999999999999999999976 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 005609 257 PPGNDFHIMADTLRKFFEARWKAI 280 (688)
Q Consensus 257 ~~~s~V~~~A~~L~~~Fe~~~k~i 280 (688)
..+..+|..|..+++.....+...
T Consensus 642 ~~dtv~~r~av~~~e~~~~~~~~a 665 (1051)
T KOG0955|consen 642 AKDTVYYRAAVRLRELIKKDFRNA 665 (1051)
T ss_pred ccCeehHhhhHHHHhhhhhHHHhc
Confidence 999999999999999888776654
No 43
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.92 E-value=1.1e-09 Score=100.94 Aligned_cols=42 Identities=29% Similarity=0.452 Sum_probs=39.9
Q ss_pred cCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcccccCCCC
Q 005609 218 KHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPG 259 (688)
Q Consensus 218 k~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~~ 259 (688)
-+||||+||++||.+|+|.++.+|++||+|||.||++||.++
T Consensus 62 ~y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 62 FYNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred EeccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 468999999999999999999999999999999999999873
No 44
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.81 E-value=5.3e-09 Score=122.70 Aligned_cols=100 Identities=31% Similarity=0.435 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHcC------CCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcccc
Q 005609 181 KQCETLLKRLMSH------QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMT 254 (688)
Q Consensus 181 k~c~~IL~~L~~~------~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~ 254 (688)
+.|..|+....++ ..+.+|... |++..+||||.||+.||++..|+++|.++.|.+..+...||.++|.||++
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~--~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~ 1104 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKL--PSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNART 1104 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccC--cccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhh
Confidence 7788888777755 447789887 56789999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 005609 255 YNPPGNDFHIMADTLRKFFEARWKAIEK 282 (688)
Q Consensus 255 YN~~~s~V~~~A~~L~~~Fe~~~k~ie~ 282 (688)
||..||.||..|..|+.+|......|..
T Consensus 1105 ~~~egs~~y~d~~~l~~~~~~~~~~~~~ 1132 (1157)
T KOG0386|consen 1105 YNEEGSRVYEDAIVLQSVFKSARQEISK 1132 (1157)
T ss_pred hccCCceechhHHHHHHHHhhhHHHHhc
Confidence 9999999999999999999998888753
No 45
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.74 E-value=1e-08 Score=122.63 Aligned_cols=94 Identities=30% Similarity=0.551 Sum_probs=81.0
Q ss_pred HHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcccccCCCCCHHH
Q 005609 184 ETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFH 263 (688)
Q Consensus 184 ~~IL~~L~~~~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~~s~V~ 263 (688)
..|+.+++.-+.+|+|.+||+.. .+|+||.+|++||||.||.+++....|.+..+|.+||++|+.||..||+..+.+.
T Consensus 1388 d~~vs~~~~ipes~~f~~~v~~k--~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~y~ 1465 (1563)
T KOG0008|consen 1388 DNIVSQMKEIPESWPFHEPVNKK--RVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAESAYT 1465 (1563)
T ss_pred hhHHHHHHhcchhcccccccchh--hchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCcccccc
Confidence 34455555568899999999965 7999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHH
Q 005609 264 IMADTLRKFFEARWKA 279 (688)
Q Consensus 264 ~~A~~L~~~Fe~~~k~ 279 (688)
..|..+-.+....+.+
T Consensus 1466 ~k~~k~~ev~~~~~~e 1481 (1563)
T KOG0008|consen 1466 KKARKIGEVGLANLLE 1481 (1563)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777776666555443
No 46
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.67 E-value=2.6e-08 Score=113.80 Aligned_cols=98 Identities=27% Similarity=0.365 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHcC------CCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhc
Q 005609 178 ILMKQCETLLKRLMSH------QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSN 251 (688)
Q Consensus 178 ~~~k~c~~IL~~L~~~------~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~N 251 (688)
..+.++..||..|..+ .....|.+. |.+...|+||.+|..||.|..|++|+..+.|.+.+.|..|+.|||.|
T Consensus 52 ~~~~~f~~il~~~~~~~d~~gk~~~d~fekl--p~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~en 129 (629)
T KOG1827|consen 52 PLIPKFKTILASLLDLKDDEGKQLFDKFEKL--PSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTEN 129 (629)
T ss_pred HHHHHHHHHHHHHHhhccccCcccchhHhhc--cccccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 4566677777777766 346678777 44779999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHHH
Q 005609 252 AMTYNPPGNDFHIMADTLRKFFEARW 277 (688)
Q Consensus 252 A~~YN~~~s~V~~~A~~L~~~Fe~~~ 277 (688)
|+.||.+++.+|.++..|+..|....
T Consensus 130 a~~~n~~ds~~~~~s~~l~~~~~~~~ 155 (629)
T KOG1827|consen 130 ARLYNRPDSLIYKDSGELEKYFISLE 155 (629)
T ss_pred HHHhcCcchhhhhhhhhhhcchhhhh
Confidence 99999999999999999999998754
No 47
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.62 E-value=6e-08 Score=116.32 Aligned_cols=103 Identities=29% Similarity=0.442 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcccccCCC
Q 005609 179 LMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPP 258 (688)
Q Consensus 179 ~~k~c~~IL~~L~~~~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~ 258 (688)
+.-.+..|++.+...++..+|..||+.. .++|||.||+.||||.|+|+.+....|.+-++|+.|+.|||+|..+||++
T Consensus 1262 ~ss~l~~i~n~~~~~~~t~~f~~Pv~~k--~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~ 1339 (1563)
T KOG0008|consen 1262 LSSILETIINQARSSPNTYPFPTPVNAK--EVKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGP 1339 (1563)
T ss_pred cccchHHHHHHHhcCCCCcCCCCccchh--hccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCc
Confidence 4455678889999999999999999955 89999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhh
Q 005609 259 GNDFHIMADTLRKFFEARWKAIEKK 283 (688)
Q Consensus 259 ~s~V~~~A~~L~~~Fe~~~k~ie~k 283 (688)
.+.+...+..+....-..|.+-+.+
T Consensus 1340 ~~~~t~~~q~mls~~~~~~~ekedk 1364 (1563)
T KOG0008|consen 1340 LASLTRQQQSMLSLCFEKLKEKEDK 1364 (1563)
T ss_pred hHHHHHHHHHHHHHHHHhhchhHHH
Confidence 9999999999888877777654443
No 48
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.62 E-value=1.1e-08 Score=119.33 Aligned_cols=93 Identities=40% Similarity=0.744 Sum_probs=86.8
Q ss_pred HHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcccccCCCCCHHHHHHH
Q 005609 188 KRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMAD 267 (688)
Q Consensus 188 ~~L~~~~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~~s~V~~~A~ 267 (688)
+.+.+|.++|+|..||+.+.+.+|+||.+|++|||++||+.++.+++|.+..+..+|+.-+|.||..||.++.+|+.++.
T Consensus 2 ~~~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~ 81 (640)
T KOG1474|consen 2 KEARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQ 81 (640)
T ss_pred cccccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccc
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 005609 268 TLRKFFEARWKAI 280 (688)
Q Consensus 268 ~L~~~Fe~~~k~i 280 (688)
.++..|......+
T Consensus 82 ~~~~~~~~~~~~~ 94 (640)
T KOG1474|consen 82 SLEKLFPKKLRSM 94 (640)
T ss_pred cchhhcccccccc
Confidence 9999997665543
No 49
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.45 E-value=1.3e-07 Score=109.58 Aligned_cols=67 Identities=34% Similarity=0.527 Sum_probs=62.9
Q ss_pred cCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcccccCCCCC
Q 005609 192 SHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGN 260 (688)
Q Consensus 192 ~~~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~~s 260 (688)
.+.++|+|.+||+.. ..|+||.||+-||||+|+.+++..+.|.+.++|..|+.+||.||.+||..-+
T Consensus 300 ~~~~s~~~~~kvs~~--~a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n~ee~ 366 (720)
T KOG1472|consen 300 RTEHSTPFLEKVSKE--DAPNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYNSEES 366 (720)
T ss_pred ccccccccccCCChh--hCcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhccccc
Confidence 388999999999955 8999999999999999999999999999999999999999999999997643
No 50
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.04 E-value=9.7e-07 Score=95.15 Aligned_cols=95 Identities=25% Similarity=0.213 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcccccCCCCC
Q 005609 181 KQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGN 260 (688)
Q Consensus 181 k~c~~IL~~L~~~~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~~s 260 (688)
.....++.+|-+...-..|..||.+. ..|+|.+||+.|||+.|++.|++-++|.+..+|..|.+||..||..||..++
T Consensus 22 ~~~ehhlrkl~sKdp~q~fafplt~~--map~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~T 99 (418)
T KOG1828|consen 22 GDAEHHLRKLPSKDPKQKFAFPLTDK--MAPNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPT 99 (418)
T ss_pred hhHHHHHHhccccChhhhhccccchh--hccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCc
Confidence 33456777777777778888898866 7999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005609 261 DFHIMADTLRKFFEARW 277 (688)
Q Consensus 261 ~V~~~A~~L~~~Fe~~~ 277 (688)
.++..|..|..+-...+
T Consensus 100 v~~~aaKrL~~v~~~~~ 116 (418)
T KOG1828|consen 100 VPIVAAKRLCPVRLGMT 116 (418)
T ss_pred cccccccccchhhcchh
Confidence 99999999987654433
No 51
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=97.90 E-value=5.5e-06 Score=89.48 Aligned_cols=84 Identities=21% Similarity=0.176 Sum_probs=75.2
Q ss_pred HHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcccccCCCCCHHHH
Q 005609 185 TLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHI 264 (688)
Q Consensus 185 ~IL~~L~~~~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~~s~V~~ 264 (688)
....+|.......+|+.|+-.. ..|.|..+|++|+|++|++.|...+.|.| .+|..|+.||+-||++||.+...+|.
T Consensus 215 ~q~~kl~~~~p~~~lnyg~tas--~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~yye 291 (418)
T KOG1828|consen 215 LQEDKLNRVDPVAYLNYGPTAS--FAPGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKSYYE 291 (418)
T ss_pred HHHHHhcccCchhhhcccchhh--hcccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchHHHH
Confidence 3445555667788999997755 89999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHH
Q 005609 265 MADTLRK 271 (688)
Q Consensus 265 ~A~~L~~ 271 (688)
+|..+.-
T Consensus 292 lank~lh 298 (418)
T KOG1828|consen 292 LANKQLH 298 (418)
T ss_pred HHHhhhh
Confidence 9988876
No 52
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=96.74 E-value=0.00047 Score=76.06 Aligned_cols=92 Identities=32% Similarity=0.541 Sum_probs=82.6
Q ss_pred HHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcccccCCCCCHHHHH
Q 005609 186 LLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIM 265 (688)
Q Consensus 186 IL~~L~~~~~a~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~~s~V~~~ 265 (688)
++.....+...|+|..++... ..|+|+++|..+|++.|.+.++..+.|.....|..|..++|.||..||+....++..
T Consensus 271 ~i~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (371)
T COG5076 271 LITNSQAHVGAWPFLRPVSDE--EVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKN 348 (371)
T ss_pred cccccccccccccccccCCcc--cccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhhh
Confidence 334446678899999998744 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 005609 266 ADTLRKFFEARWKA 279 (688)
Q Consensus 266 A~~L~~~Fe~~~k~ 279 (688)
+..+..+|......
T Consensus 349 ~~~~~~~~~~~~~~ 362 (371)
T COG5076 349 ANVLEDFVIKKTRL 362 (371)
T ss_pred ccchhhhHhhhhhh
Confidence 99999998876654
No 53
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.06 E-value=0.056 Score=63.44 Aligned_cols=60 Identities=43% Similarity=0.534 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHHhhh
Q 005609 598 RREREELELQKR-----KEKARLQAEAKAAEEARRQ----AEADA-AVEARRKREVEREAARQALLKVNS 657 (688)
Q Consensus 598 ~~e~e~le~~~~-----~ekar~~a~~~aae~a~r~----~~~~~-~~e~k~~re~ereaar~al~~me~ 657 (688)
|+|+||+|+..| +||+|.++|-|+-.+..++ +|-|+ .+|.++++-.+|||||+.|.+|-+
T Consensus 341 qreree~eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkeie~rEaar~ElEkqRq 410 (1118)
T KOG1029|consen 341 QREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEIERREAAREELEKQRQ 410 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444443 3455677777766655433 23333 223333444567899988866543
No 54
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=95.05 E-value=0.028 Score=53.44 Aligned_cols=61 Identities=18% Similarity=0.360 Sum_probs=45.9
Q ss_pred CCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 005609 220 PMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARWKAI 280 (688)
Q Consensus 220 PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~~s~V~~~A~~L~~~Fe~~~k~i 280 (688)
|.||.-|++||..|.|+++.+|.+||-.|+.-++.-.+....+-+.-..+..+|.+.+..+
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~v 119 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESV 119 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHh
Confidence 8999999999999999999999999999998777655444444444444555665554443
No 55
>PLN03086 PRLI-interacting factor K; Provisional
Probab=94.94 E-value=0.1 Score=60.61 Aligned_cols=67 Identities=37% Similarity=0.430 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---cCCccc
Q 005609 597 LRREREELELQKRKEKA----RLQAEAKAAEEARRQAEADAAVEARRKREVEREAARQALLKVNSV---QMGSHL 664 (688)
Q Consensus 597 l~~e~e~le~~~~~eka----r~~a~~~aae~a~r~~~~~~~~e~k~~re~ereaar~al~~me~t---~~~~~~ 664 (688)
|++-+|.||+.|+|.|+ |+++|-|+-++|+|++|| -++..+.+|=-.++|+-.|=|+|+.. +.|+-|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 78 (567)
T PLN03086 5 LRRAREKLEREQRERKQRAKLKLERERKAKEEAAKQREA-IEAAQRSRRLDAIEAQIKADQQMQESLQAGRGIVF 78 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Confidence 55556666666665544 678888998888888884 22223333333455666677888887 666555
No 56
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=94.90 E-value=0.32 Score=51.65 Aligned_cols=48 Identities=27% Similarity=0.339 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q 005609 600 EREELELQKRKEKARLQAEAKAAEEARRQAEADA--AVEARRKREVEREA 647 (688)
Q Consensus 600 e~e~le~~~~~ekar~~a~~~aae~a~r~~~~~~--~~e~k~~re~erea 647 (688)
++++|..++.+.+++++.+-..++++.|++.|+. ..=.++|.++++.+
T Consensus 100 ~~~klqqk~l~~~~~~E~~k~~~e~e~Rk~lA~~~y~eWl~~K~~q~~~~ 149 (264)
T PF13904_consen 100 EQEKLQQKQLELKQKEEREKQEEEKEERKRLAEEKYQEWLQRKEEQERKQ 149 (264)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444333333445666666666666666666543 34444554444443
No 57
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=93.80 E-value=1.2 Score=53.34 Aligned_cols=87 Identities=30% Similarity=0.421 Sum_probs=52.4
Q ss_pred hHHHHhhcccchhhhHHhhhhcccccC---CCCChHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005609 563 KLYRATLLKNRFADTILKAKEKTLSQG---DKGDPEKLRREREELEL--------QKRKEKARLQAEAKAAEEARRQAEA 631 (688)
Q Consensus 563 k~~raa~l~~rfad~i~ka~~k~l~~~---~~~dp~kl~~e~e~le~--------~~~~ekar~~a~~~aae~a~r~~~~ 631 (688)
|.||+-|=-.|=.+.=|+-|---|..+ -|.+-.-||+|-|+|+. ||++-..-.+.|-|-+++++.++++
T Consensus 428 kkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~l 507 (697)
T PF09726_consen 428 KKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASL 507 (697)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888888775555544 34555667777776665 4444444445555556665555555
Q ss_pred HH--HHHHHHHHHHHHHHHH
Q 005609 632 DA--AVEARRKREVEREAAR 649 (688)
Q Consensus 632 ~~--~~e~k~~re~ereaar 649 (688)
|+ .+|.|++++.|..|||
T Consensus 508 EkQL~eErk~r~~ee~~aar 527 (697)
T PF09726_consen 508 EKQLQEERKARKEEEEKAAR 527 (697)
T ss_pred HHHHHHHHHHHhHHHHhhhh
Confidence 44 4444444444444444
No 58
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=92.78 E-value=0.6 Score=57.94 Aligned_cols=17 Identities=6% Similarity=0.120 Sum_probs=12.1
Q ss_pred CCCCHHHHHHHHHHHHH
Q 005609 257 PPGNDFHIMADTLRKFF 273 (688)
Q Consensus 257 ~~~s~V~~~A~~L~~~F 273 (688)
..-++||.++..|..++
T Consensus 221 s~KSDVWSLG~ILYELL 237 (1021)
T PTZ00266 221 DDKSDMWALGCIIYELC 237 (1021)
T ss_pred CchhHHHHHHHHHHHHH
Confidence 34578888888776655
No 59
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=92.32 E-value=0.58 Score=58.09 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=12.0
Q ss_pred eeeCCCCCHHHHHHHHHHHHhHHHHHHHH
Q 005609 67 VLSLPNLSRSERKDLVHKLTSDLEQIRIL 95 (688)
Q Consensus 67 ~~~~s~~s~~e~~~L~~rl~~Ele~VR~l 95 (688)
++.+..+...+. .+|..|+.-.+.|
T Consensus 45 vIk~~~l~e~~~----~~~~~EI~IL~~L 69 (1021)
T PTZ00266 45 AISYRGLKEREK----SQLVIEVNVMREL 69 (1021)
T ss_pred EEeccccCHHHH----HHHHHHHHHHHHc
Confidence 344444444443 3455566554444
No 60
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.68 E-value=0.68 Score=54.86 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHhhhc
Q 005609 634 AVEARRKREVEREAARQA--LLKVNSV 658 (688)
Q Consensus 634 ~~e~k~~re~ereaar~a--l~~me~t 658 (688)
..|..++|.+|=|.||.+ |-+|+|-
T Consensus 402 r~ElEkqRqlewErar~qem~~Qk~re 428 (1118)
T KOG1029|consen 402 REELEKQRQLEWERARRQEMLNQKNRE 428 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 456666777777777754 4566666
No 61
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=90.61 E-value=1.1 Score=53.22 Aligned_cols=64 Identities=38% Similarity=0.464 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 005609 595 EKLRREREELELQKRKEKARLQAEA----KAAEEARRQAEA-----DAAVEARRKREVEREAARQALLKVNSV 658 (688)
Q Consensus 595 ~kl~~e~e~le~~~~~ekar~~a~~----~aae~a~r~~~~-----~~~~e~k~~re~ereaar~al~~me~t 658 (688)
|.-|+|-||-++|..|||+|+.+|. |++|+.|+.++. +++.+++-.+|.|.|+-||+-.+-||-
T Consensus 936 ER~rrEaeek~rre~ee~k~~k~e~e~kRK~eEeqr~~qee~e~~l~~e~q~qla~e~eee~k~q~~~Eqer~ 1008 (1259)
T KOG0163|consen 936 ERKRREAEEKRRREEEEKKRAKAEMETKRKAEEEQRKAQEEEERRLALELQEQLAKEAEEEAKRQNQLEQERR 1008 (1259)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3334555555566666666665543 333333333332 124555666677777777775555554
No 62
>PTZ00121 MAEBL; Provisional
Probab=88.55 E-value=1.9 Score=54.44 Aligned_cols=15 Identities=20% Similarity=0.005 Sum_probs=7.7
Q ss_pred hhcccchhhhHHhhh
Q 005609 568 TLLKNRFADTILKAK 582 (688)
Q Consensus 568 a~l~~rfad~i~ka~ 582 (688)
|..|.++|-.+-.||
T Consensus 1120 ~~~r~e~arr~eeAR 1134 (2084)
T PTZ00121 1120 AKKKAEDARKAEEAR 1134 (2084)
T ss_pred HHHHHHHHHHHHHHh
Confidence 345555555555554
No 63
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=88.47 E-value=0.44 Score=56.89 Aligned_cols=59 Identities=24% Similarity=0.393 Sum_probs=51.2
Q ss_pred ccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHHHH
Q 005609 217 IKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEA 275 (688)
Q Consensus 217 Ik~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~~s~V~~~A~~L~~~Fe~ 275 (688)
-.-|..|..|..+|++++|.+.+.|..||..|..||.+|-+-+..+...+..|...|..
T Consensus 1050 fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~ 1108 (1113)
T KOG0644|consen 1050 FPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDR 1108 (1113)
T ss_pred CCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhh
Confidence 34688999999999999999999999999999999999999888777776777666653
No 64
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=87.66 E-value=1.9 Score=51.45 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005609 597 LRREREELELQKRKEKARLQA 617 (688)
Q Consensus 597 l~~e~e~le~~~~~ekar~~a 617 (688)
.++|.||-++|.+||+.|+++
T Consensus 225 ~~qe~eE~qkreeEE~~r~ee 245 (1064)
T KOG1144|consen 225 KRQEEEERQKREEEERLRREE 245 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544
No 65
>KOG3375 consensus Phosphoprotein/predicted coiled-coil protein [General function prediction only]
Probab=86.81 E-value=2.5 Score=40.92 Aligned_cols=58 Identities=40% Similarity=0.457 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 005609 597 LRREREELELQKRKEK-ARLQAEAKAAEEARRQAEA----DAAVEARRKREVEREAARQALLK 654 (688)
Q Consensus 597 l~~e~e~le~~~~~ek-ar~~a~~~aae~a~r~~~~----~~~~e~k~~re~ereaar~al~~ 654 (688)
-|+|+|+||++...|+ -+|+...|.-++..-++.- ...+|+-++||.|+.||+.+-++
T Consensus 108 SRRereeiEKQrA~eRYmklh~aGKTeqAkaDLaRlalir~qReeaa~kre~ekkaa~~~tk~ 170 (174)
T KOG3375|consen 108 SRREREEIEKQRAKERYMKLHLAGKTEQAKADLARLALIRQQREEAAAKREAEKKAADVATKK 170 (174)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence 4999999999887666 4787776665544333221 22567778999999999887553
No 66
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=86.40 E-value=0.34 Score=59.70 Aligned_cols=64 Identities=17% Similarity=0.168 Sum_probs=56.2
Q ss_pred CCCCCCCcccccc---CCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHH--HHHhhhhcccccCCCC
Q 005609 196 GWVFNTPVDVVKM---NIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLA--DVRLTFSNAMTYNPPG 259 (688)
Q Consensus 196 a~~F~~PVD~~~~---~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~--DvrLIF~NA~~YN~~~ 259 (688)
...|..|+.+... .+++|..+|+.+||+...-.++..+.|.++.+|.. +++|||.|++.||+..
T Consensus 533 ~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 533 SVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred ccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 6678888764322 25699999999999999999999999999999999 9999999999999875
No 67
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=84.09 E-value=3 Score=50.13 Aligned_cols=71 Identities=30% Similarity=0.365 Sum_probs=36.2
Q ss_pred hhhcccccCCCCChHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH---HHHHHHHHHH
Q 005609 581 AKEKTLSQGDKGDPEKLRREREELELQ--KRKEKARLQAEAKAAEEARRQAEADAAVEA-RRKREVE---REAARQALLK 654 (688)
Q Consensus 581 a~~k~l~~~~~~dp~kl~~e~e~le~~--~~~ekar~~a~~~aae~a~r~~~~~~~~e~-k~~re~e---reaar~al~~ 654 (688)
||.+.+ ..-|.|-||++.++|.=|.+ .++.++--.||-|++.++.. +.|+ |..+|.| -+.++.++++
T Consensus 568 aRk~li-E~rKe~~E~~~~~re~Eea~~q~~e~~~~r~aE~kRl~ee~~------Ere~~R~l~E~e~i~~k~~ke~~~~ 640 (988)
T KOG2072|consen 568 ARKSLI-EKRKEDLEKQNVEREAEEAQEQAKEQRQAREAEEKRLIEEKK------EREAKRILREKEAIRKKELKERLEQ 640 (988)
T ss_pred HHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 33456777775555444433 33333222233333332222 2222 2345555 6788899999
Q ss_pred hhhc
Q 005609 655 VNSV 658 (688)
Q Consensus 655 me~t 658 (688)
|+.|
T Consensus 641 ~~~t 644 (988)
T KOG2072|consen 641 LKQT 644 (988)
T ss_pred HHHH
Confidence 9999
No 68
>PF05110 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 This family consist of family member 1 (proto-oncogene AF4), family member 2 or FMR2 (Fragile X E mental retardation syndrome), family member 3 or LAF4 (lymphoid nuclear protein related to AF4) and family member 4 (protein lilliputian). Lilliputian is a Drosophila AF4 protein homologue which contains an AT-hook domain. It represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila []. These proteins have been linked to Homo sapiens diseases such as acute lymphoblastic leukemia and mental retardation [].
Probab=84.08 E-value=1.6 Score=55.12 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=10.9
Q ss_pred HHHHHHHhHH---HHHHHHH
Q 005609 80 DLVHKLTSDL---EQIRILQ 96 (688)
Q Consensus 80 ~L~~rl~~El---e~VR~l~ 96 (688)
+|=.|+.+.| |.|-.|.
T Consensus 46 eLssriQ~mLGnYeemk~~~ 65 (1191)
T PF05110_consen 46 ELSSRIQNMLGNYEEMKELL 65 (1191)
T ss_pred HHHHHHHHHhcCHHHHhccc
Confidence 5656666554 7887776
No 69
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=83.65 E-value=4.5 Score=48.25 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=14.8
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 005609 381 LSNDTLLTLRKLLDDYLEEK 400 (688)
Q Consensus 381 L~~eTL~eL~~yV~~~L~~k 400 (688)
-+|+|+.+|-.-|+.||.-.
T Consensus 771 sDPe~m~~lv~kVn~WLv~s 790 (1259)
T KOG0163|consen 771 SDPETMLELVAKVNKWLVRS 790 (1259)
T ss_pred cCHHHHHHHHHHHHHHHHHh
Confidence 47788888888888887653
No 70
>PF10252 PP28: Casein kinase substrate phosphoprotein PP28; InterPro: IPR019380 This domain is a region of 70 residues conserved in proteins from plants to humans and contains a serine/arginine rich motif. In rats the full protein is a casein kinase substrate, and this region contains phosphorylation sites for both cAMP-dependent protein kinase and casein kinase II [].
Probab=82.81 E-value=4.7 Score=35.58 Aligned_cols=36 Identities=44% Similarity=0.661 Sum_probs=27.2
Q ss_pred ChHHH-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 005609 593 DPEKL-RREREELELQKRKEKA-RLQAEAKAAEEARRQ 628 (688)
Q Consensus 593 dp~kl-~~e~e~le~~~~~eka-r~~a~~~aae~a~r~ 628 (688)
+|.-| |+|+|++|+++..++= .|+++.|.-|+..-+
T Consensus 21 ~~~~lSRRERE~iekq~A~erY~klh~~GKT~eakaDL 58 (82)
T PF10252_consen 21 APPELSRREREEIEKQRARERYMKLHAEGKTDEAKADL 58 (82)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHhhchHHHHHhH
Confidence 44455 9999999999877765 678888887765443
No 71
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=82.65 E-value=3.4 Score=43.91 Aligned_cols=19 Identities=42% Similarity=0.597 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005609 598 RREREELELQKRKEKARLQ 616 (688)
Q Consensus 598 ~~e~e~le~~~~~ekar~~ 616 (688)
|+|+.|||+...|||.|++
T Consensus 330 rqekqeleqmaeeekkr~e 348 (445)
T KOG2891|consen 330 RQEKQELEQMAEEEKKREE 348 (445)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566667766666666665
No 72
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=82.14 E-value=2.7 Score=48.06 Aligned_cols=16 Identities=50% Similarity=0.688 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 005609 636 EARRKREVEREAARQA 651 (688)
Q Consensus 636 e~k~~re~ereaar~a 651 (688)
+-|+++|-|||.+|+.
T Consensus 350 ~er~~~~ee~e~~R~~ 365 (460)
T KOG1363|consen 350 KERKEEEEERETARQL 365 (460)
T ss_pred hhhhhHHHHHHHHHHH
Confidence 3344456778888863
No 73
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=80.36 E-value=18 Score=35.49 Aligned_cols=31 Identities=23% Similarity=0.066 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhhhc--------------cCCcccccchhhccc
Q 005609 643 VEREAARQALLKVNSV--------------QMGSHLFLPRFLFWF 673 (688)
Q Consensus 643 ~ereaar~al~~me~t--------------~~~~~~~~~~~~~~~ 673 (688)
+.+||-|.|.++=.-. +-+-.|+|-+|+||-
T Consensus 71 kieeaR~dav~kS~~Vi~GrVtEqlaPffp~f~ynPkD~RfIGTP 115 (175)
T COG4741 71 KIEEAREDAVRKSRAVILGRVTEQLAPFFPEFKYNPKDARFIGTP 115 (175)
T ss_pred HHHHHHHHHHHHhHHHHhhhhHhhhcccccCCCcCCccceeeCCC
Confidence 4556666777765543 445566788888874
No 74
>PTZ00121 MAEBL; Provisional
Probab=79.74 E-value=8.1 Score=49.22 Aligned_cols=6 Identities=33% Similarity=0.833 Sum_probs=2.4
Q ss_pred HHHHHH
Q 005609 180 MKQCET 185 (688)
Q Consensus 180 ~k~c~~ 185 (688)
...|.+
T Consensus 358 f~~CiE 363 (2084)
T PTZ00121 358 FKKCIE 363 (2084)
T ss_pred HHHHHH
Confidence 344433
No 75
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=76.55 E-value=1.6 Score=51.37 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=10.3
Q ss_pred CCCCChHHHHHHHHHH
Q 005609 589 GDKGDPEKLRREREEL 604 (688)
Q Consensus 589 ~~~~dp~kl~~e~e~l 604 (688)
..--||-|+-||.-++
T Consensus 1349 aswsdpskipqevlri 1364 (1463)
T PHA03308 1349 ASWSDPSKIPQEVLRI 1364 (1463)
T ss_pred cccCCcccchHHHHHH
Confidence 3456888887775443
No 76
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=76.55 E-value=16 Score=45.13 Aligned_cols=61 Identities=13% Similarity=0.227 Sum_probs=33.0
Q ss_pred CchhhhccCCCCHHHHHHHHh-cCCCCCHHHHHHHHHhhhhcccccCCCCCH----HHHHHHHHH--HHHHHHHH
Q 005609 211 PDYYTIIKHPMDFGTIKEKMA-SNAYSSPLEFLADVRLTFSNAMTYNPPGND----FHIMADTLR--KFFEARWK 278 (688)
Q Consensus 211 PDYy~iIk~PMDL~TIkkKL~-~~~Y~S~~eF~~DvrLIF~NA~~YN~~~s~----V~~~A~~L~--~~Fe~~~k 278 (688)
--|+.--.+||-|..+...+- .+.|..+.+|+. ||..++..++. .|.+|+--. ..|++.++
T Consensus 261 ~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~-------~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~ 328 (1018)
T KOG2002|consen 261 RAYKENNENPVALNHLANHFYFKKDYERVWHLAE-------HAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFK 328 (1018)
T ss_pred HHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHH-------HHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 447777788987776665543 345666655543 44555433332 455554432 23555444
No 77
>PLN02316 synthase/transferase
Probab=75.79 E-value=7.2 Score=48.87 Aligned_cols=17 Identities=35% Similarity=0.663 Sum_probs=10.7
Q ss_pred CCeEEEeCCCCCHHHHH
Q 005609 371 EDEIEIDIDDLSNDTLL 387 (688)
Q Consensus 371 ~dEIEIDId~L~~eTL~ 387 (688)
+..+-+|.+.++++.|.
T Consensus 98 ~~~~~~~~~~~~~~~~~ 114 (1036)
T PLN02316 98 EESISTDMDGIDDDSLD 114 (1036)
T ss_pred cccccccccccchHHHH
Confidence 35556666777776665
No 78
>PLN03086 PRLI-interacting factor K; Provisional
Probab=75.51 E-value=4 Score=47.82 Aligned_cols=65 Identities=28% Similarity=0.396 Sum_probs=42.8
Q ss_pred hhhhccc-ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005609 580 KAKEKTL-SQGDKGDPEKLRREREELELQKRKEKARLQAEAKAAEEARRQAEADAAVEARRKREVEREA 647 (688)
Q Consensus 580 ka~~k~l-~~~~~~dp~kl~~e~e~le~~~~~ekar~~a~~~aae~a~r~~~~~~~~e~k~~re~erea 647 (688)
.||+|-. +|.+..+-.||++|+ |++.|+|.|+--.+|-|++..||...++|.++|+.+-|.-|.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (567)
T PLN03086 7 RAREKLEREQRERKQRAKLKLER---ERKAKEEAAKQREAIEAAQRSRRLDAIEAQIKADQQMQESLQA 72 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4556533 244555555666655 4567777777777788888888887777777777666655543
No 79
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=74.48 E-value=15 Score=41.20 Aligned_cols=12 Identities=25% Similarity=0.271 Sum_probs=6.2
Q ss_pred CCCCCCCCCCch
Q 005609 551 ESAPNERQVSPD 562 (688)
Q Consensus 551 ~~~~~~~~~sp~ 562 (688)
.+++..+-|.|-
T Consensus 47 g~~i~AVmvD~~ 58 (387)
T PRK09510 47 GSVIDAVMVDPG 58 (387)
T ss_pred cccccceecChH
Confidence 344555555554
No 80
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=73.43 E-value=18 Score=44.26 Aligned_cols=31 Identities=23% Similarity=0.258 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHHHHhhhcccChHHHHHHHHh
Q 005609 331 VMTDQEKHNLGRELESLLAEMPVHIIDFLRE 361 (688)
Q Consensus 331 ~MT~eEK~~L~~~I~~Lp~E~l~~II~II~~ 361 (688)
-++..+...|...|..|-.+....+..|+++
T Consensus 223 y~ep~~~~~ln~~l~~l~~~~~~~~~~il~~ 253 (782)
T PRK00409 223 YIEPQSVVELNNEIRELRNKEEQEIERILKE 253 (782)
T ss_pred EEEcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777766655544444444443
No 81
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=71.77 E-value=22 Score=39.93 Aligned_cols=8 Identities=63% Similarity=0.808 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 005609 611 EKARLQAE 618 (688)
Q Consensus 611 ekar~~a~ 618 (688)
|+.|+|++
T Consensus 107 e~er~~~~ 114 (387)
T PRK09510 107 EKERLAAQ 114 (387)
T ss_pred HHHHHHHH
Confidence 33344433
No 82
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=68.75 E-value=23 Score=36.01 Aligned_cols=58 Identities=33% Similarity=0.453 Sum_probs=28.1
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 005609 590 DKGDPEKLRREREELELQKRKEKARLQAEAKAAEEARRQAEADAAVEARRKREVEREAARQALLKVNSVQMG 661 (688)
Q Consensus 590 ~~~dp~kl~~e~e~le~~~~~ekar~~a~~~aae~a~r~~~~~~~~e~k~~re~ereaar~al~~me~t~~~ 661 (688)
.+.||..+.+..|.++.-.+ |||++..|. |+....+++++|.|+=|++|.+-|+.+++
T Consensus 71 ~~~dpd~v~~rqEa~eaAR~----RmQEE~dak----------A~~~kEKq~q~EEEKRrqkie~we~~q~G 128 (190)
T PF06936_consen 71 AKKDPDVVVRRQEAMEAARR----RMQEELDAK----------AEEYKEKQKQEEEEKRRQKIEMWESMQEG 128 (190)
T ss_dssp HTTSHHHHHHHHHHHHHHHH----HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred hhcChhHHHHHHHHHHHHHH----HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777666666653322 344433222 12222334556666666777655655443
No 83
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=68.75 E-value=27 Score=36.83 Aligned_cols=83 Identities=18% Similarity=0.168 Sum_probs=42.0
Q ss_pred hcccchhhhHHhhhhc-cccc-----CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005609 569 LLKNRFADTILKAKEK-TLSQ-----GDKGDPEKLRREREELELQKRKEKARLQAEAKAAEEARRQAEADAAVEARRKRE 642 (688)
Q Consensus 569 ~l~~rfad~i~ka~~k-~l~~-----~~~~dp~kl~~e~e~le~~~~~ekar~~a~~~aae~a~r~~~~~~~~e~k~~re 642 (688)
++|+.|+-+..+.+.. .+.+ ..+.+-++++.+.+++-...++|-++|-++|++--++.+.+......+++.+++
T Consensus 4 ~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e 83 (255)
T TIGR03825 4 IIKSTKSVIPAQERGIIPLRQVTDVPETEQELADEEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERE 83 (255)
T ss_pred hhcCccCCcchhhcceeeeeeeccCcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555554432 1111 222234666777777777777777777776665444443222112334444444
Q ss_pred HHHHHHHHH
Q 005609 643 VEREAARQA 651 (688)
Q Consensus 643 ~ereaar~a 651 (688)
.-++.||+.
T Consensus 84 ~~~e~A~~e 92 (255)
T TIGR03825 84 RLIQEAKQE 92 (255)
T ss_pred HHHHHHHHH
Confidence 444444444
No 84
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=68.70 E-value=20 Score=39.12 Aligned_cols=8 Identities=38% Similarity=0.833 Sum_probs=6.9
Q ss_pred CCeEEEeC
Q 005609 371 EDEIEIDI 378 (688)
Q Consensus 371 ~dEIEIDI 378 (688)
.|.|+|+|
T Consensus 110 ~D~v~i~i 117 (321)
T PF07946_consen 110 KDRVTIEI 117 (321)
T ss_pred CCeEEEEE
Confidence 68899998
No 85
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=68.52 E-value=24 Score=38.40 Aligned_cols=11 Identities=36% Similarity=0.462 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 005609 635 VEARRKREVER 645 (688)
Q Consensus 635 ~e~k~~re~er 645 (688)
+|+|++-|.++
T Consensus 167 aeAkkkAe~a~ 177 (387)
T COG3064 167 AEAKKKAEEAA 177 (387)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 86
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.58 E-value=24 Score=37.15 Aligned_cols=13 Identities=38% Similarity=0.539 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 005609 596 KLRREREELELQK 608 (688)
Q Consensus 596 kl~~e~e~le~~~ 608 (688)
++|+|-|+-|+.+
T Consensus 118 r~qRe~E~~eREe 130 (299)
T KOG3054|consen 118 RAQREAEEAEREE 130 (299)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555444433
No 87
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=66.68 E-value=18 Score=42.88 Aligned_cols=8 Identities=38% Similarity=0.492 Sum_probs=3.5
Q ss_pred Hhhhhccc
Q 005609 579 LKAKEKTL 586 (688)
Q Consensus 579 ~ka~~k~l 586 (688)
+|...|-+
T Consensus 249 ~KQ~rk~m 256 (811)
T KOG4364|consen 249 LKQLRKNM 256 (811)
T ss_pred HHHHHHhH
Confidence 44444444
No 88
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=66.65 E-value=4.5 Score=46.67 Aligned_cols=16 Identities=31% Similarity=0.210 Sum_probs=8.5
Q ss_pred CCCCcccccccccCCC
Q 005609 28 GSSGRIDAEITASEDS 43 (688)
Q Consensus 28 ~~~~~~~~~~~~s~~~ 43 (688)
||+..-|+|-+.+|+.
T Consensus 2 ~ssv~~dkps~~~d~r 17 (739)
T KOG2140|consen 2 ESSVQPDKPSTSSDKR 17 (739)
T ss_pred CcccCCCCCCCchhhh
Confidence 3455556665555543
No 89
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=66.65 E-value=22 Score=42.99 Aligned_cols=18 Identities=33% Similarity=0.470 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005609 609 RKEKARLQAEAKAAEEAR 626 (688)
Q Consensus 609 ~~ekar~~a~~~aae~a~ 626 (688)
.||++|.+.+-+++|+|+
T Consensus 245 eEEer~~ee~E~~~eEak 262 (1064)
T KOG1144|consen 245 EEEERRREEEEAQEEEAK 262 (1064)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333344443
No 90
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=66.40 E-value=57 Score=32.16 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005609 636 EARRKREVEREAARQALL 653 (688)
Q Consensus 636 e~k~~re~ereaar~al~ 653 (688)
+|++.-+.||++|...|+
T Consensus 104 ~A~~~Ie~Ek~~Al~elr 121 (154)
T PRK06568 104 DAIQLIQNQKSTASKELQ 121 (154)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444555555555554
No 91
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=66.00 E-value=30 Score=42.38 Aligned_cols=31 Identities=26% Similarity=0.266 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHHhhhcccChHHHHHHHHh
Q 005609 331 VMTDQEKHNLGRELESLLAEMPVHIIDFLRE 361 (688)
Q Consensus 331 ~MT~eEK~~L~~~I~~Lp~E~l~~II~II~~ 361 (688)
-++..+...|.+.|..|-.+....+..|++.
T Consensus 218 ~~ep~~~~~ln~~l~~l~~~~~~e~~~il~~ 248 (771)
T TIGR01069 218 YIEPQAIVKLNNKLAQLKNEEECEIEKILRT 248 (771)
T ss_pred EEEcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666655544444444443
No 92
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=65.61 E-value=33 Score=42.04 Aligned_cols=16 Identities=31% Similarity=0.437 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 005609 612 KARLQAEAKAAEEARR 627 (688)
Q Consensus 612 kar~~a~~~aae~a~r 627 (688)
+++|+++.+..++.++
T Consensus 545 ~~~l~~~~~~l~~~~~ 560 (771)
T TIGR01069 545 KKELEQEMEELKERER 560 (771)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444443333
No 93
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.46 E-value=12 Score=42.10 Aligned_cols=26 Identities=42% Similarity=0.414 Sum_probs=13.4
Q ss_pred HHhhhhcccccCCCCChHHHHHHHHH
Q 005609 578 ILKAKEKTLSQGDKGDPEKLRREREE 603 (688)
Q Consensus 578 i~ka~~k~l~~~~~~dp~kl~~e~e~ 603 (688)
|-++.-=-|...-+.+-.+.|++.|+
T Consensus 352 id~~~~~~lS~~~k~kt~~~RQ~~~e 377 (440)
T KOG2357|consen 352 IDKAKKLFLSKDAKAKTDKNRQRVEE 377 (440)
T ss_pred HHHHHhhhchHHHHhhhhhhHHHHHH
Confidence 33443333444445566677776544
No 94
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=65.11 E-value=3.8 Score=50.10 Aligned_cols=48 Identities=54% Similarity=0.650 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005609 595 EKLRREREELELQKRKEKARLQAEAKAAEEARRQAEADAAVEARRKREVEREAARQA 651 (688)
Q Consensus 595 ~kl~~e~e~le~~~~~ekar~~a~~~aae~a~r~~~~~~~~e~k~~re~ereaar~a 651 (688)
-||-+.|||+ -||+|-|||.+|-|++.|.++ .|.-|.||+|||+.|++
T Consensus 578 SKLAkKRee~-----~ek~RReaEq~~reerERer~----~e~~rerer~~~~~r~~ 625 (982)
T PF03154_consen 578 SKLAKKREER-----VEKARREAEQRAREERERERE----REREREREREREAERAA 625 (982)
T ss_pred cHHhhhhHHH-----HHHHHhhhhccchhhhhhccc----ccchhhhhhhhhhhhhh
Confidence 4787777774 245677777766555544332 22234445555555554
No 95
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=64.98 E-value=24 Score=42.69 Aligned_cols=23 Identities=48% Similarity=0.562 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHH
Q 005609 601 REELELQKRKEK-ARLQAEAKAAE 623 (688)
Q Consensus 601 ~e~le~~~~~ek-ar~~a~~~aae 623 (688)
|-.||++..+|| +|.+|+.+||.
T Consensus 504 R~~lEkQL~eErk~r~~ee~~aar 527 (697)
T PF09726_consen 504 RASLEKQLQEERKARKEEEEKAAR 527 (697)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhhh
Confidence 455666655555 56666666554
No 96
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=64.71 E-value=37 Score=34.06 Aligned_cols=18 Identities=50% Similarity=0.538 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005609 596 KLRREREELELQKRKEKA 613 (688)
Q Consensus 596 kl~~e~e~le~~~~~eka 613 (688)
+.|+++|+.+++.+++.+
T Consensus 44 ~ER~ekEE~er~~ree~~ 61 (171)
T PF05672_consen 44 QERLEKEEQERRKREELA 61 (171)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 97
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=64.67 E-value=17 Score=39.62 Aligned_cols=10 Identities=20% Similarity=0.315 Sum_probs=6.4
Q ss_pred chhhhHHhhh
Q 005609 573 RFADTILKAK 582 (688)
Q Consensus 573 rfad~i~ka~ 582 (688)
.|+|.+.+.+
T Consensus 242 ~l~D~~~~~~ 251 (321)
T PF07946_consen 242 YLIDKLARFK 251 (321)
T ss_pred HHHHHhheee
Confidence 3788887443
No 98
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=64.61 E-value=2.3e+02 Score=34.14 Aligned_cols=23 Identities=39% Similarity=0.342 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005609 605 ELQKRKEKARLQAEAKAAEEARR 627 (688)
Q Consensus 605 e~~~~~ekar~~a~~~aae~a~r 627 (688)
|+..+.-.|-++-++|+|+++.|
T Consensus 537 ekl~~khqa~~ekeak~~~a~Ek 559 (948)
T KOG0577|consen 537 EKLARKHQAIGEKEAKAASAEEK 559 (948)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHH
Confidence 34444444444445555544443
No 99
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=64.37 E-value=34 Score=38.71 Aligned_cols=50 Identities=32% Similarity=0.403 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhh
Q 005609 607 QKRKEKARLQAEAKAAEEARRQAEADA----AVEARRKREVEREAARQALLKVN 656 (688)
Q Consensus 607 ~~~~ekar~~a~~~aae~a~r~~~~~~----~~e~k~~re~ereaar~al~~me 656 (688)
+.+-|-+-|++-+.+-|+-+|.+|-.| +.|.||+||..-..+|.|=.+-|
T Consensus 247 rlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle~E 300 (502)
T KOG0982|consen 247 RLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLEKE 300 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544322 55666666665555555544443
No 100
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=63.30 E-value=59 Score=38.06 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005609 605 ELQKRKEKARLQAEAKAAEEARRQ 628 (688)
Q Consensus 605 e~~~~~ekar~~a~~~aae~a~r~ 628 (688)
-+-..||--.+.++-+++++.|+.
T Consensus 237 ~kvk~~e~~~~dee~k~i~~~rke 260 (782)
T PF07218_consen 237 IKVKEEEEKELDEEHKEIEEKRKE 260 (782)
T ss_pred HHHHHHHHhHHhHHHHHHHHHHHH
Confidence 344445555566666766666553
No 101
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=62.14 E-value=54 Score=33.83 Aligned_cols=29 Identities=48% Similarity=0.619 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005609 617 AEAKAAEEARRQAEADAAVEARRKREVER 645 (688)
Q Consensus 617 a~~~aae~a~r~~~~~~~~e~k~~re~er 645 (688)
-+++|-++..|.+|+|-++|.|++|+.|=
T Consensus 177 ~e~r~~~eRkr~re~eIeaeek~Kr~~E~ 205 (250)
T KOG1150|consen 177 LEARANEERKRQREEEIEAEEKRKREREW 205 (250)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666665543
No 102
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=62.05 E-value=8 Score=45.91 Aligned_cols=17 Identities=12% Similarity=0.526 Sum_probs=10.5
Q ss_pred hccCCCCHHHHHHHHhc
Q 005609 216 IIKHPMDFGTIKEKMAS 232 (688)
Q Consensus 216 iIk~PMDL~TIkkKL~~ 232 (688)
+-..|+.|+...+++.-
T Consensus 965 fa~dpv~l~ef~kr~sp 981 (1463)
T PHA03308 965 FARDPVALGEFCKRISP 981 (1463)
T ss_pred hccCchHHHHHHhhcCc
Confidence 34566667777666654
No 103
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=61.72 E-value=60 Score=33.01 Aligned_cols=33 Identities=30% Similarity=0.252 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005609 623 EEARRQAEADAAVEARRKREVEREAARQALLKV 655 (688)
Q Consensus 623 e~a~r~~~~~~~~e~k~~re~ereaar~al~~m 655 (688)
|.++=.++.++=.|.+++-+.+-||+|++.|+=
T Consensus 67 er~~l~~er~~~~~~~~e~~~~~e~~r~~feke 99 (228)
T PRK06800 67 ERQQLLADREQFQEHVQQQMKEIEAARQQFQKE 99 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444556677788888889999998763
No 104
>PF00836 Stathmin: Stathmin family; InterPro: IPR000956 Stathmin is a ubiquitous phosphorylated protein thought to act as an intracellular relay for diverse regulatory pathways [], functioning through a variety of secondary messengers. Its phosphorylation and gene expression are regulated throughout development [] and in response to extracellular signals regulating cell proliferation, differentiation and function []. Stathmin, and the related proteins SCG10 and XB3, contain a N-terminal domain (XB3 contains an additional N-terminal hydrophobic region), a 78 amino acid coiled-coil region, and a short C-terminal domain.; GO: 0035556 intracellular signal transduction; PDB: 3RYC_E 3RYH_E 3N2K_E 1Z2B_E 1SA1_E 3HKD_E 3DU7_E 3HKC_E 3HKB_E 3HKE_E ....
Probab=61.18 E-value=11 Score=36.56 Aligned_cols=39 Identities=41% Similarity=0.479 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005609 615 LQAEAKAAEEARRQAEADAAVEARRKREVEREAARQALL 653 (688)
Q Consensus 615 ~~a~~~aae~a~r~~~~~~~~e~k~~re~ereaar~al~ 653 (688)
||.-.+|||++|+-.||+--.-...+||.+|+.++.|+.
T Consensus 47 IqkKLeAAEERRKs~Ea~~l~~laekreh~~ev~~Ka~E 85 (140)
T PF00836_consen 47 IQKKLEAAEERRKSQEAQVLKKLAEKREHEREVLQKALE 85 (140)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444567888888887776544444567777777666653
No 105
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=59.51 E-value=60 Score=39.68 Aligned_cols=21 Identities=24% Similarity=0.253 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005609 611 EKARLQAEAKAAEEARRQAEA 631 (688)
Q Consensus 611 ekar~~a~~~aae~a~r~~~~ 631 (688)
++-|+....+.+|++.|++|.
T Consensus 797 eerk~~~~re~EEEr~Rr~EE 817 (988)
T KOG2072|consen 797 EERKQAYYREIEEERARREEE 817 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555544
No 106
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=59.36 E-value=76 Score=31.28 Aligned_cols=38 Identities=16% Similarity=0.140 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 005609 621 AAEEARRQAEADAAVEARRKREVEREAARQALLKVNSV 658 (688)
Q Consensus 621 aae~a~r~~~~~~~~e~k~~re~ereaar~al~~me~t 658 (688)
.|.+...+..+++-.+++..-++-.+.|++.++.++.-
T Consensus 78 ~A~~~a~~~~~ea~~eA~~ea~r~~~~A~~~Ie~Ek~~ 115 (154)
T PRK06568 78 ESNEVTKKIIQEKTKEIEEFLEHKKSDAIQLIQNQKST 115 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344555666666666667777777766654
No 107
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=59.15 E-value=46 Score=37.85 Aligned_cols=13 Identities=31% Similarity=0.624 Sum_probs=6.9
Q ss_pred HHHHHHHHHHhhh
Q 005609 335 QEKHNLGRELESL 347 (688)
Q Consensus 335 eEK~~L~~~I~~L 347 (688)
.+..+|...|++|
T Consensus 59 ~~~~kL~~~lk~~ 71 (420)
T COG4942 59 DQRAKLEKQLKSL 71 (420)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555555
No 108
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.58 E-value=45 Score=35.25 Aligned_cols=8 Identities=25% Similarity=0.451 Sum_probs=4.0
Q ss_pred HHHHhhhc
Q 005609 651 ALLKVNSV 658 (688)
Q Consensus 651 al~~me~t 658 (688)
...+|+-.
T Consensus 175 EylkmKaa 182 (299)
T KOG3054|consen 175 EYLKMKAA 182 (299)
T ss_pred HHHHHHhh
Confidence 34566543
No 109
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=57.51 E-value=59 Score=32.11 Aligned_cols=81 Identities=14% Similarity=0.210 Sum_probs=37.7
Q ss_pred hHHhhhhcccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005609 577 TILKAKEKTLSQGDKGDPEKLRREREELELQKRKEKARLQAEAKA-AEEARRQAEADAAVEARRKREVEREAARQALLKV 655 (688)
Q Consensus 577 ~i~ka~~k~l~~~~~~dp~kl~~e~e~le~~~~~ekar~~a~~~a-ae~a~r~~~~~~~~e~k~~re~ereaar~al~~m 655 (688)
-|+..|++.... +-..-++++.|-++++..-.++-+.-.+++.+ ++++|.+..|+++++.+.-.+.=++.--+-.++|
T Consensus 37 ~iLe~R~~~I~~-~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~~~~~~~~~~ 115 (155)
T PRK06569 37 EIFNNRQTNIQD-NITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKNSINQNIEDI 115 (155)
T ss_pred HHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666654432 22233455555555544444433332232222 1233444444555554444444455555667777
Q ss_pred hhc
Q 005609 656 NSV 658 (688)
Q Consensus 656 e~t 658 (688)
.+.
T Consensus 116 ~~~ 118 (155)
T PRK06569 116 NLA 118 (155)
T ss_pred HHH
Confidence 766
No 110
>PLN02316 synthase/transferase
Probab=56.81 E-value=25 Score=44.25 Aligned_cols=11 Identities=18% Similarity=0.344 Sum_probs=5.0
Q ss_pred CCCCCCCCccc
Q 005609 445 PPVSSYPPMEI 455 (688)
Q Consensus 445 ~p~~~~~pv~i 455 (688)
.|+.+.+-|.|
T Consensus 165 ~~L~~~~~v~i 175 (1036)
T PLN02316 165 STLANEPDVLI 175 (1036)
T ss_pred CccCCCCceEE
Confidence 34444444444
No 111
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=56.81 E-value=58 Score=40.01 Aligned_cols=29 Identities=34% Similarity=0.253 Sum_probs=13.2
Q ss_pred hhHHhhhhcccccCCCCChHHHHHHHHHHHH
Q 005609 576 DTILKAKEKTLSQGDKGDPEKLRREREELEL 606 (688)
Q Consensus 576 d~i~ka~~k~l~~~~~~dp~kl~~e~e~le~ 606 (688)
+.|-.|++..- .+..+-++|-.+.++..+
T Consensus 502 ~ii~~A~~~~~--~~~~~~~~li~~l~~~~~ 530 (782)
T PRK00409 502 NIIEEAKKLIG--EDKEKLNELIASLEELER 530 (782)
T ss_pred HHHHHHHHHHh--hhhhHHHHHHHHHHHHHH
Confidence 45556665222 233455555444333333
No 112
>COG4290 Guanyl-specific ribonuclease Sa [Nucleotide transport and metabolism]
Probab=56.68 E-value=6.5 Score=37.68 Aligned_cols=31 Identities=39% Similarity=0.595 Sum_probs=21.8
Q ss_pred CCCCCcccccccccCCCCCC------CCCCCcccccc
Q 005609 7 RFSGGYYRSNAFETTGESEG------SGSSGRIDAEI 37 (688)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 37 (688)
+-+.||||-+.|||+|++.- +|..-+.|+|+
T Consensus 100 ar~~gYYREYTVeTpG~sdRGarRIV~GGd~~t~~e~ 136 (152)
T COG4290 100 ARSRGYYREYTVETPGLSDRGARRIVTGGDPPTDPEV 136 (152)
T ss_pred ccccCcceeeEeeCCCcccCCceeEeeCCCCCCCcce
Confidence 34689999999999998752 35554555443
No 113
>KOG2133 consensus Transcriptional corepressor Atrophin-1/DRPLA [General function prediction only]
Probab=56.24 E-value=7.2 Score=47.67 Aligned_cols=57 Identities=42% Similarity=0.542 Sum_probs=39.2
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005609 590 DKGDPEKLRREREELELQKRKEKARLQAEAKAAEEARRQAEADAAVEARRKREVEREAARQALL 653 (688)
Q Consensus 590 ~~~dp~kl~~e~e~le~~~~~ekar~~a~~~aae~a~r~~~~~~~~e~k~~re~ereaar~al~ 653 (688)
.-.-|+||-..++.+ +|||+-.|+++++|+.+|.++ ++.|.-|+||.||||-|-|-.
T Consensus 805 ~Pl~p~~~akl~~~~-----~~kak~aa~~ra~er~~~~r~--re~e~~~e~e~~~~aersak~ 861 (1229)
T KOG2133|consen 805 EPLSPSKLAKLRSNV-----EEKAKRAAEQRARERSERERE--RETELEREREVEREAERSAKE 861 (1229)
T ss_pred CCCCcccccccccch-----HHHHHHHHHHHHHHhhhhhhh--hhhcccccccccchHHhhhhh
Confidence 334455555555544 478888999999998777555 566666777777887776655
No 114
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=56.04 E-value=46 Score=38.61 Aligned_cols=18 Identities=33% Similarity=0.639 Sum_probs=10.6
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 005609 382 SNDTLLTLRKLLDDYLEE 399 (688)
Q Consensus 382 ~~eTL~eL~~yV~~~L~~ 399 (688)
..+....|++.|..||..
T Consensus 77 ~vdhI~nlrrIiagyl~~ 94 (489)
T PF05262_consen 77 RVDHINNLRRIIAGYLEA 94 (489)
T ss_pred CccHHHHHHHHHHHHHHH
Confidence 445556666666666554
No 115
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=52.63 E-value=4.5 Score=48.81 Aligned_cols=73 Identities=21% Similarity=0.162 Sum_probs=54.1
Q ss_pred CCccccccCCCchhhhccCCCCHHHHHHHHhcCCC--------------C----------CHHH------HHHHHHhhhh
Q 005609 201 TPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAY--------------S----------SPLE------FLADVRLTFS 250 (688)
Q Consensus 201 ~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y--------------~----------S~~e------F~~DvrLIF~ 250 (688)
-++| +..+|-|..+...|.+|+|++..|.+..| . ++.+ ...-+.+|-.
T Consensus 88 ~~~d--~~~pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~~i~~ 165 (1113)
T KOG0644|consen 88 PMLD--KPIPPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAPSIGC 165 (1113)
T ss_pred cCcC--CCCCcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCcccccceeccCCcchhhhhcCccccc
Confidence 3555 44788899999999999999999998777 2 3333 6677888999
Q ss_pred cccccCCCCCHHHH--HHHHHHHHHHH
Q 005609 251 NAMTYNPPGNDFHI--MADTLRKFFEA 275 (688)
Q Consensus 251 NA~~YN~~~s~V~~--~A~~L~~~Fe~ 275 (688)
||+.+|.|++.|-. +...|...|..
T Consensus 166 at~~~akPgtmvqkmk~ikrLlgH~na 192 (1113)
T KOG0644|consen 166 ATFSIAKPGTMVQKMKNIKRLLGHRNA 192 (1113)
T ss_pred ceeeecCcHHHHHHHHHHHHHHhhhhh
Confidence 99999999995532 33444444533
No 116
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=52.37 E-value=89 Score=31.97 Aligned_cols=58 Identities=29% Similarity=0.365 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHhhhc
Q 005609 600 EREELELQKRKEKARLQAEAKAAEEARRQAEADAAVEARRKR-------------EVEREAARQALLKVNSV 658 (688)
Q Consensus 600 e~e~le~~~~~ekar~~a~~~aae~a~r~~~~~~~~e~k~~r-------------e~ereaar~al~~me~t 658 (688)
+.+.+...||+=-.||.++..+||...|+--.|.+.|.++.- |+||+.-++ +.+|||.
T Consensus 85 ~Le~l~~~qk~~q~Rm~~qL~~aE~rhrr~i~eLe~EKrkh~~~~aqgDD~t~lLEkEReRLkq-~lE~Ek~ 155 (192)
T PF09727_consen 85 ELEKLMEHQKKMQRRMLEQLAAAEKRHRRTIQELEEEKRKHAEDMAQGDDFTNLLEKERERLKQ-QLEQEKA 155 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH-HHHHHHH
Confidence 567888899999999999999999999988777777666554 677776664 5567776
No 117
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=51.95 E-value=88 Score=35.66 Aligned_cols=7 Identities=29% Similarity=0.368 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 005609 636 EARRKRE 642 (688)
Q Consensus 636 e~k~~re 642 (688)
.++.+||
T Consensus 249 ~~re~~a 255 (420)
T COG4942 249 KAREAAA 255 (420)
T ss_pred HHHHHHH
Confidence 3344444
No 118
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=51.15 E-value=12 Score=40.74 Aligned_cols=12 Identities=42% Similarity=0.625 Sum_probs=5.2
Q ss_pred CCCCHHHHHHHH
Q 005609 234 AYSSPLEFLADV 245 (688)
Q Consensus 234 ~Y~S~~eF~~Dv 245 (688)
.|.-+.=|..|+
T Consensus 157 dY~VPk~F~dDl 168 (407)
T KOG2130|consen 157 DYSVPKYFRDDL 168 (407)
T ss_pred hcCcchhhhHHH
Confidence 344444444444
No 119
>KOG3116 consensus Predicted C3H1-type Zn-finger protein [General function prediction only]
Probab=50.51 E-value=21 Score=34.88 Aligned_cols=9 Identities=0% Similarity=0.080 Sum_probs=3.5
Q ss_pred CCCCCcccc
Q 005609 504 GHKDKLDEK 512 (688)
Q Consensus 504 ~~~~~~~~~ 512 (688)
+++.+++.+
T Consensus 145 ssdSdS~s~ 153 (177)
T KOG3116|consen 145 SSDSDSESA 153 (177)
T ss_pred CCccccccc
Confidence 333343333
No 120
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=49.58 E-value=74 Score=36.82 Aligned_cols=11 Identities=18% Similarity=0.305 Sum_probs=7.1
Q ss_pred HHHHHHHhhhc
Q 005609 648 ARQALLKVNSV 658 (688)
Q Consensus 648 ar~al~~me~t 658 (688)
-|.+|+-||--
T Consensus 452 rrkqlklmed~ 462 (708)
T KOG3654|consen 452 RRKQLKLMEDL 462 (708)
T ss_pred HHHHHHHHHhh
Confidence 35677777754
No 121
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=48.77 E-value=1.3e+02 Score=30.18 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005609 596 KLRREREELELQKRKEKARLQ 616 (688)
Q Consensus 596 kl~~e~e~le~~~~~ekar~~ 616 (688)
.+|+|+|+.|+++++|..|+.
T Consensus 36 ReQkErEE~ER~ekEE~er~~ 56 (171)
T PF05672_consen 36 REQKEREEQERLEKEEQERRK 56 (171)
T ss_pred HHHhhhHHHHHHHHHHHHHHH
Confidence 447788888888888777654
No 122
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=47.95 E-value=84 Score=32.09 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005609 616 QAEAKAAEEARRQAEADAAVEARRKREVEREAA 648 (688)
Q Consensus 616 ~a~~~aae~a~r~~~~~~~~e~k~~re~ereaa 648 (688)
.+...|.++||++..+|..+.+...+|++++.-
T Consensus 79 ~~rqEa~eaAR~RmQEE~dakA~~~kEKq~q~E 111 (190)
T PF06936_consen 79 VRRQEAMEAARRRMQEELDAKAEEYKEKQKQEE 111 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444333
No 123
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=47.94 E-value=1.7e+02 Score=28.05 Aligned_cols=21 Identities=19% Similarity=0.129 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005609 634 AVEARRKREVEREAARQALLK 654 (688)
Q Consensus 634 ~~e~k~~re~ereaar~al~~ 654 (688)
-++++..-+.+++.|+..|..
T Consensus 94 ~~~A~~~~~~~~~~a~~~l~~ 114 (141)
T PRK08476 94 IEAKKAELESKYEAFAKQLAN 114 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666665554
No 124
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=47.31 E-value=1.7e+02 Score=29.11 Aligned_cols=18 Identities=44% Similarity=0.634 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005609 595 EKLRREREELELQKRKEK 612 (688)
Q Consensus 595 ~kl~~e~e~le~~~~~ek 612 (688)
+|-++..++.+++++||.
T Consensus 69 Ek~r~k~~E~err~~EE~ 86 (157)
T PF15236_consen 69 EKRRQKQEEEERRRREEE 86 (157)
T ss_pred HHHHHHHHHHHHHHHHhH
Confidence 344444445554444443
No 125
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=47.03 E-value=1.1e+02 Score=33.29 Aligned_cols=10 Identities=10% Similarity=0.026 Sum_probs=8.1
Q ss_pred HHHHHHhhhc
Q 005609 649 RQALLKVNSV 658 (688)
Q Consensus 649 r~al~~me~t 658 (688)
+..|+-|++.
T Consensus 287 ~~~le~~~~~ 296 (317)
T TIGR01932 287 WRSLEAYEKS 296 (317)
T ss_pred HHHHHHHHHH
Confidence 6778888887
No 126
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=46.82 E-value=1.8e+02 Score=28.40 Aligned_cols=14 Identities=29% Similarity=0.302 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 005609 639 RKREVEREAARQAL 652 (688)
Q Consensus 639 ~~re~ereaar~al 652 (688)
..-+.|++.|+..|
T Consensus 111 ~~i~~ek~~a~~~l 124 (164)
T PRK14471 111 ASIESEKNAAMAEI 124 (164)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444444
No 127
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=46.50 E-value=1.2e+02 Score=34.89 Aligned_cols=16 Identities=13% Similarity=0.187 Sum_probs=8.4
Q ss_pred CHHHHHHHHHHHhhhc
Q 005609 333 TDQEKHNLGRELESLL 348 (688)
Q Consensus 333 T~eEK~~L~~~I~~Lp 348 (688)
+.+++..+...+..|.
T Consensus 80 d~e~~~~~qqe~~~Ly 95 (429)
T PRK00247 80 DEASIRELQQKQKDLN 95 (429)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3455666655555443
No 128
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=46.15 E-value=2e+02 Score=28.73 Aligned_cols=13 Identities=15% Similarity=0.440 Sum_probs=6.2
Q ss_pred hhhhHHhhhhccc
Q 005609 574 FADTILKAKEKTL 586 (688)
Q Consensus 574 fad~i~ka~~k~l 586 (688)
+--.++..|....
T Consensus 48 PI~~~l~~R~~~I 60 (184)
T CHL00019 48 VLSDLLDNRKQTI 60 (184)
T ss_pred HHHHHHHHHHHHH
Confidence 3344455555444
No 129
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=45.95 E-value=1.6e+02 Score=30.16 Aligned_cols=16 Identities=38% Similarity=0.522 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 005609 637 ARRKREVEREAARQAL 652 (688)
Q Consensus 637 ~k~~re~ereaar~al 652 (688)
++.+-|.|++.|+.+|
T Consensus 149 A~~~Ie~Ek~~a~~~L 164 (205)
T PRK06231 149 ARQEIEKERRELKEQL 164 (205)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 130
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=45.85 E-value=83 Score=34.73 Aligned_cols=52 Identities=25% Similarity=0.204 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005609 599 REREELELQKRKEKARLQAEAKAAEEARRQAEADAAVEARRKREVEREAARQALL 653 (688)
Q Consensus 599 ~e~e~le~~~~~ekar~~a~~~aae~a~r~~~~~~~~e~k~~re~ereaar~al~ 653 (688)
+..|+|=++.+||+++||++..+.....+..| ++-+.--||+..+-|+|+-.
T Consensus 130 q~LE~li~~~~EEn~~lqlqL~~l~~e~~Eke---eesq~LnrELaE~layqq~L 181 (401)
T PF06785_consen 130 QHLEGLIRHLREENQCLQLQLDALQQECGEKE---EESQTLNRELAEALAYQQEL 181 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhH---HHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999998876665444 33333456666666666543
No 131
>PF15346 ARGLU: Arginine and glutamate-rich 1
Probab=45.29 E-value=1.3e+02 Score=29.64 Aligned_cols=6 Identities=17% Similarity=-0.252 Sum_probs=3.2
Q ss_pred CCcccc
Q 005609 660 MGSHLF 665 (688)
Q Consensus 660 ~~~~~~ 665 (688)
+|++|+
T Consensus 139 ~~sRpK 144 (149)
T PF15346_consen 139 NNSRPK 144 (149)
T ss_pred CCCCCC
Confidence 356664
No 132
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=44.79 E-value=78 Score=34.06 Aligned_cols=10 Identities=30% Similarity=0.305 Sum_probs=5.3
Q ss_pred HHHHHHHHHh
Q 005609 646 EAARQALLKV 655 (688)
Q Consensus 646 eaar~al~~m 655 (688)
+|+|.|+-+=
T Consensus 170 KaeRka~~e~ 179 (290)
T KOG2689|consen 170 KAERKAKYEN 179 (290)
T ss_pred HHHHHHHhcc
Confidence 4556665543
No 133
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=44.67 E-value=1.9e+02 Score=29.71 Aligned_cols=9 Identities=11% Similarity=0.445 Sum_probs=3.9
Q ss_pred HHhhhhccc
Q 005609 578 ILKAKEKTL 586 (688)
Q Consensus 578 i~ka~~k~l 586 (688)
++..|.+..
T Consensus 76 ~L~~R~~~I 84 (205)
T PRK06231 76 FLNKRKELI 84 (205)
T ss_pred HHHHHHHHH
Confidence 344454433
No 134
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=44.46 E-value=1.6e+02 Score=34.77 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005609 598 RREREELELQKRKEKARLQAEAK 620 (688)
Q Consensus 598 ~~e~e~le~~~~~ekar~~a~~~ 620 (688)
-.|.++++...+||+..|.|+-.
T Consensus 248 dee~k~i~~~rkeerlk~l~esd 270 (782)
T PF07218_consen 248 DEEHKEIEEKRKEERLKMLAESD 270 (782)
T ss_pred hHHHHHHHHHHHHHHHHhhccCC
Confidence 34566666666666666665543
No 135
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=44.25 E-value=2.2e+02 Score=27.69 Aligned_cols=11 Identities=36% Similarity=0.549 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 005609 642 EVEREAARQAL 652 (688)
Q Consensus 642 e~ereaar~al 652 (688)
+.||++|+..|
T Consensus 128 ~~ek~~a~~~l 138 (156)
T CHL00118 128 EAQKEKALKSL 138 (156)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 136
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=44.04 E-value=2e+02 Score=28.04 Aligned_cols=20 Identities=20% Similarity=0.167 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 005609 636 EARRKREVEREAARQALLKV 655 (688)
Q Consensus 636 e~k~~re~ereaar~al~~m 655 (688)
+++.+-+...+.|++.+...
T Consensus 97 ~A~~ea~~~~~~a~~~i~~e 116 (164)
T PRK14471 97 EAQVEGDKMIEQAKASIESE 116 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444333
No 137
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=43.48 E-value=3.5 Score=48.61 Aligned_cols=74 Identities=9% Similarity=-0.060 Sum_probs=65.5
Q ss_pred CCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHH
Q 005609 197 WVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKF 272 (688)
Q Consensus 197 ~~F~~PVD~~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~~s~V~~~A~~L~~~ 272 (688)
..|..-+| ...+|+||.+++-||.+..+.+++..++|.....|..|.-.+|.|+..||.....++..+..|.+.
T Consensus 214 er~w~~~d--g~k~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~ 287 (629)
T KOG1827|consen 214 ERLWKLPD--GEKWPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEE 287 (629)
T ss_pred cccccCcc--cccccceeEeeCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCccccccc
Confidence 33444444 447999999999999999999999999999999999999999999999999999999999888774
No 138
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=43.33 E-value=1.7e+02 Score=31.92 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005609 596 KLRREREELELQKRKEKA 613 (688)
Q Consensus 596 kl~~e~e~le~~~~~eka 613 (688)
.|++.++.+|.++..|.+
T Consensus 157 ~lr~~q~~fe~~R~aEl~ 174 (291)
T PF06098_consen 157 ALRRQQRAFEELRNAELA 174 (291)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455555555555544
No 139
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=42.63 E-value=74 Score=37.41 Aligned_cols=65 Identities=32% Similarity=0.423 Sum_probs=42.2
Q ss_pred HHhhcccchhhhHHh--------hhhc-ccccCCCCC---hHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 005609 566 RATLLKNRFADTILK--------AKEK-TLSQGDKGD---PEKLRREREELELQKRKEK---ARLQAEAKAAEEARRQAE 630 (688)
Q Consensus 566 raa~l~~rfad~i~k--------a~~k-~l~~~~~~d---p~kl~~e~e~le~~~~~ek---ar~~a~~~aae~a~r~~~ 630 (688)
-+|=|+.+.||.-+. +|+| +|.|.-..+ -+||..|++++++.-+||+ .+|+.++...-++.|-+-
T Consensus 333 e~aql~~qLad~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vql 412 (546)
T PF07888_consen 333 EAAQLKLQLADASLELKEGRSQWAQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQL 412 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 356666677776443 3455 444543333 5688889888888776655 488888887777776433
No 140
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=42.01 E-value=2.2e+02 Score=28.49 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 005609 635 VEARRKREVEREAARQALLKV 655 (688)
Q Consensus 635 ~e~k~~re~ereaar~al~~m 655 (688)
++++.+-+.+|+.|+..|+.+
T Consensus 130 aea~~~I~~~k~~a~~~l~~~ 150 (181)
T PRK13454 130 AESEKRIAEIRAGALESVEEV 150 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777665
No 141
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=41.95 E-value=2.3e+02 Score=27.53 Aligned_cols=26 Identities=12% Similarity=0.060 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005609 632 DAAVEARRKREVEREAARQALLKVNS 657 (688)
Q Consensus 632 ~~~~e~k~~re~ereaar~al~~me~ 657 (688)
+.-++++.+.+...+.|++.++...+
T Consensus 107 ~~~~~A~~ea~~~~~~a~~~i~~ek~ 132 (156)
T CHL00118 107 NELKQAQKYIDSLLNEATKQLEAQKE 132 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555555666666666666655443
No 142
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=41.49 E-value=1.9e+02 Score=28.88 Aligned_cols=10 Identities=20% Similarity=0.531 Sum_probs=4.8
Q ss_pred hHHhhhhccc
Q 005609 577 TILKAKEKTL 586 (688)
Q Consensus 577 ~i~ka~~k~l 586 (688)
.|+..|.+.+
T Consensus 58 ~~l~~R~~~I 67 (181)
T PRK13454 58 AVLAERQGTI 67 (181)
T ss_pred HHHHHHHHHH
Confidence 3445555444
No 143
>TIGR01216 ATP_synt_epsi ATP synthase, F1 epsilon subunit (delta in mitochondria). This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation.
Probab=40.50 E-value=57 Score=30.84 Aligned_cols=23 Identities=17% Similarity=0.066 Sum_probs=18.8
Q ss_pred cCCCCChHHHHHHHHHHHHHHHH
Q 005609 588 QGDKGDPEKLRREREELELQKRK 610 (688)
Q Consensus 588 ~~~~~dp~kl~~e~e~le~~~~~ 610 (688)
.++..|+++++..++++|.+..+
T Consensus 83 ~~~~id~~~a~~~~~~ae~~l~~ 105 (130)
T TIGR01216 83 FADDIDEAEAEKALEAAEKLLES 105 (130)
T ss_pred EcccCCHHHHHHHHHHHHHHHhh
Confidence 56778999999999988887653
No 144
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=40.48 E-value=2.5e+02 Score=27.73 Aligned_cols=17 Identities=18% Similarity=0.180 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005609 637 ARRKREVEREAARQALL 653 (688)
Q Consensus 637 ~k~~re~ereaar~al~ 653 (688)
++..-+.|+++|+..|+
T Consensus 119 A~~~I~~ek~~a~~~l~ 135 (173)
T PRK13453 119 AQSEINSQKERAIADIN 135 (173)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 145
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=40.32 E-value=2.6e+02 Score=27.65 Aligned_cols=11 Identities=18% Similarity=0.084 Sum_probs=4.2
Q ss_pred HHHHHHHHhhh
Q 005609 647 AARQALLKVNS 657 (688)
Q Consensus 647 aar~al~~me~ 657 (688)
++..|++-.+|
T Consensus 138 i~~lA~~~a~k 148 (175)
T PRK14472 138 VADLAVKGAEK 148 (175)
T ss_pred HHHHHHHHHHH
Confidence 33333333443
No 146
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=40.31 E-value=2.3e+02 Score=28.74 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=6.0
Q ss_pred HHHHHHHHHHhhhc
Q 005609 645 REAARQALLKVNSV 658 (688)
Q Consensus 645 reaar~al~~me~t 658 (688)
+-++|+.|...+++
T Consensus 69 ~l~~r~~ll~~k~~ 82 (198)
T PRK01558 69 RQAGRDLLISFEKS 82 (198)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 147
>PF12052 VGCC_beta4Aa_N: Voltage gated calcium channel subunit beta domain 4Aa N terminal; InterPro: IPR000584 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. Co-expression of beta subunit mRNA with alpha-1 subunit mRNA in xenopus oocytes produces increased calcium currents, which are accompanied by a shift in the voltage-dependence of activation to more negative membrane potentials. Conversely, microinjection of antisense oligonucleotides to beta subunit mRNA produces decreased calcium currents and shifts voltage-dependent activation to more positive membrane potentials. There are four distinct beta subunits: beta-1, beta-2, beta-3 and beta-4; and the magnitude of the shift in the voltage-dependence of activation of change to membrane potentials varies with the particular subtype []. This entry represents the beta subunits found in L-type voltage-gated calcium channels.; GO: 0005245 voltage-gated calcium channel activity, 0006816 calcium ion transport, 0051925 regulation of calcium ion transport via voltage-gated calcium channel activity; PDB: 1T0J_A 1T0H_A 2D46_A 1T3S_A 1T3L_A 4DEY_A 4DEX_A 1VYT_B 1VYU_A.
Probab=40.31 E-value=30 Score=26.73 Aligned_cols=16 Identities=44% Similarity=0.623 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhhhc
Q 005609 643 VEREAARQALLKVNSV 658 (688)
Q Consensus 643 ~ereaar~al~~me~t 658 (688)
+-||+-|||+.++||-
T Consensus 24 lRre~erqA~~QLekA 39 (42)
T PF12052_consen 24 LRREAERQALAQLEKA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6678888999998873
No 148
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=40.13 E-value=3.4e+02 Score=26.96 Aligned_cols=17 Identities=24% Similarity=0.145 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005609 637 ARRKREVEREAARQALL 653 (688)
Q Consensus 637 ~k~~re~ereaar~al~ 653 (688)
++.+-+.||+.|+..|+
T Consensus 128 A~~~I~~ek~~a~~~l~ 144 (184)
T PRK13455 128 AEDQIASAEAAAVKAVR 144 (184)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444445555554443
No 149
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=39.51 E-value=1.5e+02 Score=30.88 Aligned_cols=10 Identities=30% Similarity=0.275 Sum_probs=6.1
Q ss_pred HHHHHHhhhc
Q 005609 649 RQALLKVNSV 658 (688)
Q Consensus 649 r~al~~me~t 658 (688)
++.|+.|++.
T Consensus 229 ~~~le~~~~~ 238 (261)
T TIGR01933 229 RLYLETMEKV 238 (261)
T ss_pred HHHHHHHHHH
Confidence 4456666666
No 150
>PRK11546 zraP zinc resistance protein; Provisional
Probab=39.23 E-value=1.2e+02 Score=29.60 Aligned_cols=60 Identities=15% Similarity=0.200 Sum_probs=43.2
Q ss_pred CCCCCCCCCCCCchhHHHHhhcccchhhhHHhhhhc---------ccccCCCCChHHHHHHHHHHHHHH
Q 005609 549 DGESAPNERQVSPDKLYRATLLKNRFADTILKAKEK---------TLSQGDKGDPEKLRREREELELQK 608 (688)
Q Consensus 549 ~~~~~~~~~~~sp~k~~raa~l~~rfad~i~ka~~k---------~l~~~~~~dp~kl~~e~e~le~~~ 608 (688)
.|+....-.+|+||+.--.=-|...|.+.....|++ +|..+++-|++|++.-..|+...+
T Consensus 34 ~G~~~~~~~~LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr 102 (143)
T PRK11546 34 HGMWQQNAAPLTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLR 102 (143)
T ss_pred CCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 455455677999999887778889999988877753 455788888887765555554433
No 151
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=37.79 E-value=24 Score=40.96 Aligned_cols=14 Identities=57% Similarity=0.563 Sum_probs=6.8
Q ss_pred CCCCCCCCCCCCcc
Q 005609 473 SGSESSSSSDSESD 486 (688)
Q Consensus 473 SsS~S~SSssS~Sd 486 (688)
|+|+||+|++|++|
T Consensus 677 s~s~s~~s~ssSsd 690 (739)
T KOG2140|consen 677 SESDSGDSSSSSSD 690 (739)
T ss_pred cCCCCCCcccccch
Confidence 44555555544444
No 152
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=37.62 E-value=1.8e+02 Score=31.96 Aligned_cols=6 Identities=50% Similarity=0.479 Sum_probs=2.2
Q ss_pred HHHHHH
Q 005609 634 AVEARR 639 (688)
Q Consensus 634 ~~e~k~ 639 (688)
++|++.
T Consensus 180 ~eeAka 185 (387)
T COG3064 180 AEEAKA 185 (387)
T ss_pred HHHHHH
Confidence 333333
No 153
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=37.48 E-value=92 Score=36.23 Aligned_cols=11 Identities=18% Similarity=0.326 Sum_probs=4.4
Q ss_pred HHHHHHHHhhh
Q 005609 337 KHNLGRELESL 347 (688)
Q Consensus 337 K~~L~~~I~~L 347 (688)
+..|.-+|-.|
T Consensus 62 ~~~~~ADi~~i 72 (489)
T PF05262_consen 62 KKKLDADIFII 72 (489)
T ss_pred ccCCCCcEEEE
Confidence 33444444433
No 154
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=37.17 E-value=2.9e+02 Score=28.32 Aligned_cols=19 Identities=16% Similarity=0.032 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005609 635 VEARRKREVEREAARQALL 653 (688)
Q Consensus 635 ~e~k~~re~ereaar~al~ 653 (688)
++++.+-+.+|+.|+..|.
T Consensus 152 ~~Ae~~I~~ek~~A~~el~ 170 (204)
T PRK09174 152 KEAEARIAAIKAKAMADVG 170 (204)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555543
No 155
>PF05501 DUF755: Domain of unknown function (DUF755) ; InterPro: IPR008474 This family is predominated by ORFs from Anelloviridae. The function of this family remains to be determined.
Probab=37.17 E-value=26 Score=33.29 Aligned_cols=7 Identities=14% Similarity=0.733 Sum_probs=2.9
Q ss_pred HHHHHHh
Q 005609 355 IIDFLRE 361 (688)
Q Consensus 355 II~II~~ 361 (688)
+++|++.
T Consensus 54 L~~l~~q 60 (123)
T PF05501_consen 54 LMQLLQQ 60 (123)
T ss_pred HHHHHHH
Confidence 4444443
No 156
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=36.94 E-value=2.9e+02 Score=27.25 Aligned_cols=10 Identities=20% Similarity=0.567 Sum_probs=4.8
Q ss_pred hHHhhhhccc
Q 005609 577 TILKAKEKTL 586 (688)
Q Consensus 577 ~i~ka~~k~l 586 (688)
.++..|++.+
T Consensus 46 ~~l~~R~~~I 55 (174)
T PRK07352 46 KILEERREAI 55 (174)
T ss_pred HHHHHHHHHH
Confidence 3445555444
No 157
>PF06658 DUF1168: Protein of unknown function (DUF1168); InterPro: IPR009548 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=36.60 E-value=2.6e+02 Score=27.29 Aligned_cols=15 Identities=40% Similarity=0.505 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHH
Q 005609 599 REREELELQKRKEKA 613 (688)
Q Consensus 599 ~e~e~le~~~~~eka 613 (688)
+|.++|+....+.+.
T Consensus 47 rE~~Rl~~me~~~~~ 61 (142)
T PF06658_consen 47 REYERLEYMEEEAKK 61 (142)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455565555444333
No 158
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=36.52 E-value=3e+02 Score=27.17 Aligned_cols=14 Identities=7% Similarity=0.126 Sum_probs=5.6
Q ss_pred HHHHHHHHHHhhhc
Q 005609 645 REAARQALLKVNSV 658 (688)
Q Consensus 645 reaar~al~~me~t 658 (688)
.+.+..|++-.+|.
T Consensus 134 ~ei~~lA~~~a~ki 147 (173)
T PRK13460 134 NQIVEMTITIASKV 147 (173)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333344444443
No 159
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=36.16 E-value=77 Score=28.65 Aligned_cols=49 Identities=16% Similarity=0.342 Sum_probs=40.8
Q ss_pred cCCCCCHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 005609 232 SNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARWKAI 280 (688)
Q Consensus 232 ~~~Y~S~~eF~~DvrLIF~NA~~YN~~~s~V~~~A~~L~~~Fe~~~k~i 280 (688)
.-.|.|..-|...|..|-.....++..+..+..+|..|...|++.|+.+
T Consensus 3 ~~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~ 51 (101)
T PF14372_consen 3 GSSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDC 51 (101)
T ss_pred CCCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3468888888888877777777777778899999999999999999865
No 160
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=36.02 E-value=2e+02 Score=33.16 Aligned_cols=62 Identities=32% Similarity=0.344 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhc
Q 005609 597 LRREREELELQKRKEKARLQAEAKAAEEA--------RRQAEADA----AVEARRKREVEREAARQALLKVNSV 658 (688)
Q Consensus 597 l~~e~e~le~~~~~ekar~~a~~~aae~a--------~r~~~~~~----~~e~k~~re~ereaar~al~~me~t 658 (688)
||.|||+=-+..++|.-.||.|.+--.+| -|.+|||. +.+.-..-|+|-+.|-+++.+++|-
T Consensus 397 lr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~k 470 (488)
T PF06548_consen 397 LRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQENEKAKKQIEKLKRK 470 (488)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788887788899999999998743322 36666643 3344444556666666666666654
No 161
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=34.79 E-value=3.5e+02 Score=26.63 Aligned_cols=10 Identities=20% Similarity=0.348 Sum_probs=4.8
Q ss_pred hhhhHHhhhh
Q 005609 574 FADTILKAKE 583 (688)
Q Consensus 574 fad~i~ka~~ 583 (688)
.++.|..|+.
T Consensus 55 I~~~l~~A~~ 64 (174)
T PRK07352 55 ILQALKEAEE 64 (174)
T ss_pred HHHHHHHHHH
Confidence 4455555543
No 162
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=34.14 E-value=3.5e+02 Score=26.57 Aligned_cols=18 Identities=22% Similarity=0.143 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005609 637 ARRKREVEREAARQALLK 654 (688)
Q Consensus 637 ~k~~re~ereaar~al~~ 654 (688)
++.+-+.||+.|+..|+.
T Consensus 111 A~~~I~~e~~~a~~el~~ 128 (167)
T PRK14475 111 AERKIAQAEAQAAADVKA 128 (167)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444555555555543
No 163
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=33.53 E-value=1.7e+02 Score=34.21 Aligned_cols=17 Identities=41% Similarity=0.593 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005609 614 RLQAEAKAAEEARRQAE 630 (688)
Q Consensus 614 r~~a~~~aae~a~r~~~ 630 (688)
.++.++++||+.++.++
T Consensus 525 k~kkelrkaeekqk~ae 541 (591)
T KOG2505|consen 525 KLKKELRKAEEKQKYAE 541 (591)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56667777787777666
No 164
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=33.52 E-value=1.9e+02 Score=33.98 Aligned_cols=18 Identities=28% Similarity=0.176 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 005609 641 REVEREAARQALLKVNSV 658 (688)
Q Consensus 641 re~ereaar~al~~me~t 658 (688)
.|.||.+|+++=.+|..-
T Consensus 260 qeee~ke~e~~~~k~~q~ 277 (591)
T KOG2412|consen 260 QEEERKEAEEQAEKEVQD 277 (591)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 366777777777776544
No 165
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=33.38 E-value=2.9e+02 Score=27.62 Aligned_cols=46 Identities=26% Similarity=0.328 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 005609 600 EREELELQKRKEKARLQAEAKAAEE-ARRQAEADAAVEARRKREVER 645 (688)
Q Consensus 600 e~e~le~~~~~ekar~~a~~~aae~-a~r~~~~~~~~e~k~~re~er 645 (688)
.+++.+++..++.+.+..+++...+ .++++.+.+..+.|++.-..|
T Consensus 33 i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar 79 (198)
T PRK03963 33 IKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQ 79 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443222 222333334444444444333
No 166
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=33.32 E-value=3.1e+02 Score=27.09 Aligned_cols=10 Identities=30% Similarity=0.328 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 005609 643 VEREAARQAL 652 (688)
Q Consensus 643 ~ereaar~al 652 (688)
.|++.|+.+|
T Consensus 125 ~e~~~a~~~l 134 (175)
T PRK14472 125 QEKRRALDVL 134 (175)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 167
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=33.26 E-value=3.6e+02 Score=26.65 Aligned_cols=17 Identities=12% Similarity=0.354 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHhhhc
Q 005609 642 EVEREAARQALLKVNSV 658 (688)
Q Consensus 642 e~ereaar~al~~me~t 658 (688)
++..+++..|++-.+|.
T Consensus 133 ~l~~ei~~lA~~~a~kl 149 (173)
T PRK13453 133 DINNQVSELSVLIASKV 149 (173)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 168
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=33.10 E-value=27 Score=43.09 Aligned_cols=23 Identities=39% Similarity=0.455 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 005609 636 EARRKREVEREAARQALLKVNSV 658 (688)
Q Consensus 636 e~k~~re~ereaar~al~~me~t 658 (688)
|.-++||.|||.+|++=+..+.+
T Consensus 606 er~~e~~rerer~~~~~r~~k~s 628 (982)
T PF03154_consen 606 EREREREREREREREAERAAKAS 628 (982)
T ss_pred cccccchhhhhhhhhhhhhhccc
Confidence 33334455666666666666655
No 169
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=33.02 E-value=2.7e+02 Score=31.95 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 005609 639 RKREVEREAARQAL 652 (688)
Q Consensus 639 ~~re~ereaar~al 652 (688)
.+-+.||+.|...|
T Consensus 104 ~~Ie~ek~~a~~el 117 (445)
T PRK13428 104 RQVQLLRAQLTRQL 117 (445)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 170
>PLN03188 kinesin-12 family protein; Provisional
Probab=32.88 E-value=1.9e+02 Score=37.38 Aligned_cols=62 Identities=29% Similarity=0.286 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-------HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhc
Q 005609 597 LRREREELELQKRKEKARLQAEAKAA-EEA-------RRQAEADA----AVEARRKREVEREAARQALLKVNSV 658 (688)
Q Consensus 597 l~~e~e~le~~~~~ekar~~a~~~aa-e~a-------~r~~~~~~----~~e~k~~re~ereaar~al~~me~t 658 (688)
||.|||.=-+..++|.-.||+|.+-- |+. =|.+|||. |.+.-..-|+|-+.|-+.+.+++|-
T Consensus 1167 l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrk 1240 (1320)
T PLN03188 1167 LKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRK 1240 (1320)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777788899999999997632 222 36666653 3444455567777777777777765
No 171
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=32.83 E-value=74 Score=31.28 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005609 598 RREREELELQKRKEKARLQAEAKAA 622 (688)
Q Consensus 598 ~~e~e~le~~~~~ekar~~a~~~aa 622 (688)
.+=++||+.++..++..+-++++.|
T Consensus 13 ~~L~~EL~~L~~~~r~e~~~~i~~A 37 (157)
T PRK01885 13 ARLKQELDYLWREERPEVTQKVSWA 37 (157)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3334455555555555555555555
No 172
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=32.37 E-value=3.5e+02 Score=28.31 Aligned_cols=9 Identities=22% Similarity=0.202 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 005609 642 EVEREAARQ 650 (688)
Q Consensus 642 e~ereaar~ 650 (688)
+.|++.|..
T Consensus 111 e~E~~~a~~ 119 (246)
T TIGR03321 111 RREQAALSD 119 (246)
T ss_pred HHHHHHHHH
Confidence 344444443
No 173
>PF09831 DUF2058: Uncharacterized protein conserved in bacteria (DUF2058); InterPro: IPR018636 This family, found in various prokaryotic proteins, has no known function.
Probab=32.30 E-value=2.4e+02 Score=28.50 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 005609 634 AVEARRKREVEREAARQALLKVNSV 658 (688)
Q Consensus 634 ~~e~k~~re~ereaar~al~~me~t 658 (688)
+.-..|+.+.++.+...+|.+|=.+
T Consensus 59 ~Ln~qr~~~~~~K~~~AqikQlI~~ 83 (177)
T PF09831_consen 59 ELNRQRQAEAERKEIQAQIKQLIEQ 83 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667777777777777777665
No 174
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=32.11 E-value=3.4e+02 Score=26.93 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005609 600 EREELELQKRKEKARLQA 617 (688)
Q Consensus 600 e~e~le~~~~~ekar~~a 617 (688)
|.+++....+.+.+.+.+
T Consensus 17 e~~~I~~ea~~~~~~i~~ 34 (188)
T PRK02292 17 RASEIRAEADEEAEEIIA 34 (188)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333344444433
No 175
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=31.82 E-value=91 Score=36.48 Aligned_cols=26 Identities=38% Similarity=0.405 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 005609 600 EREELELQKRKEKARL--QAEAKAAEEA 625 (688)
Q Consensus 600 e~e~le~~~~~ekar~--~a~~~aae~a 625 (688)
+.+|..|+++++.+++ ||.++++|+-
T Consensus 232 ~~qEe~Rqk~d~~~~~~eqekiR~~eek 259 (591)
T KOG2412|consen 232 AHQEELRQKEDEEAELQEQEKIRAEEEK 259 (591)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3444444444444433 4555555544
No 176
>KOG4220 consensus Muscarinic acetylcholine receptor [Signal transduction mechanisms]
Probab=31.62 E-value=8.7e+02 Score=28.15 Aligned_cols=12 Identities=33% Similarity=0.274 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHH
Q 005609 640 KREVEREAARQA 651 (688)
Q Consensus 640 ~re~ereaar~a 651 (688)
.+-+||+|||+-
T Consensus 408 ~~~rErKAAkTL 419 (503)
T KOG4220|consen 408 SLVRERKAAKTL 419 (503)
T ss_pred hhHHHHHHHHHH
Confidence 446788999874
No 177
>PF09802 Sec66: Preprotein translocase subunit Sec66; InterPro: IPR018624 Members of this family of proteins are a component of the heterotetrameric Sec62/63 complex composed of SEC62, SEC63, SEC66 and SEC72. The Sec62/63 complex associates with the Sec61 complex to form the Sec complex. Sec 66 is involved in SRP-independent post-translational translocation across the endoplasmic reticulum and functions together with the Sec61 complex and KAR2 in a channel-forming translocon complex. Furthermore, Sec66 is also required for growth at elevated temperatures [, , , ].
Probab=30.97 E-value=6e+02 Score=26.06 Aligned_cols=39 Identities=33% Similarity=0.636 Sum_probs=28.5
Q ss_pred CCCCCCchhHHHHhhcccchhhh--HHhhhhc-----cc-ccCCCCC
Q 005609 555 NERQVSPDKLYRATLLKNRFADT--ILKAKEK-----TL-SQGDKGD 593 (688)
Q Consensus 555 ~~~~~sp~k~~raa~l~~rfad~--i~ka~~k-----~l-~~~~~~d 593 (688)
...+-.|++.|+|||||+--+|. |+|-|+. .| .+|--||
T Consensus 64 ~k~~k~~e~VLKAALLrRavedIrR~~klre~k~~l~~L~q~GsIGD 110 (190)
T PF09802_consen 64 EKKPKVPEKVLKAALLRRAVEDIRRIIKLREDKPALNKLYQNGSIGD 110 (190)
T ss_pred cccCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHCCCccH
Confidence 34477899999999999988885 5666642 23 3687777
No 178
>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein. DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.
Probab=30.85 E-value=2e+02 Score=28.12 Aligned_cols=9 Identities=33% Similarity=0.597 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 005609 601 REELELQKR 609 (688)
Q Consensus 601 ~e~le~~~~ 609 (688)
+.+++++++
T Consensus 8 ~~~~~~~r~ 16 (151)
T PF11875_consen 8 KREIEEQRE 16 (151)
T ss_pred HHHHHHHHH
Confidence 333333333
No 179
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=30.82 E-value=2.2e+02 Score=29.86 Aligned_cols=62 Identities=18% Similarity=0.182 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhc
Q 005609 594 PEKLRREREELELQKRKEKARLQAEAKAAEEARRQAEADAAVEA-----RRKREVEREAARQALLKVNSV 658 (688)
Q Consensus 594 p~kl~~e~e~le~~~~~ekar~~a~~~aae~a~r~~~~~~~~e~-----k~~re~ereaar~al~~me~t 658 (688)
-.||+.|+.........-|..-+..-+.||.|+.+.+ +++. +++.|+-|...-++.++|.+.
T Consensus 114 ~~kl~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar~k~e---~a~~~~~~~~~~~eKak~k~~~~~~k~~~a 180 (237)
T cd07657 114 RQQIDEQYKKLTDEVEKLKSEYQKLLEDYKAAKSKFE---EAVVKGGRGGRKLDKARDKYQKACRKLHLC 180 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhcccchhhHHHHHHHHHHHHHHHHHH
Confidence 3566777666666666666667777777788877765 3333 235566666666777777776
No 180
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=30.70 E-value=1.5e+02 Score=32.69 Aligned_cols=25 Identities=48% Similarity=0.692 Sum_probs=13.8
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHH
Q 005609 589 GDKGDPEKLRREREELELQKRKEKA 613 (688)
Q Consensus 589 ~~~~dp~kl~~e~e~le~~~~~eka 613 (688)
|+..|--+|++|+++-++....+|.
T Consensus 86 ~ey~~~~~~~rer~E~eL~eLkekq 110 (361)
T KOG3634|consen 86 GEYEDFDRIEREREEKELKELKEKQ 110 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666665555555554
No 181
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=30.69 E-value=34 Score=40.05 Aligned_cols=6 Identities=0% Similarity=0.147 Sum_probs=2.2
Q ss_pred HHHHHH
Q 005609 609 RKEKAR 614 (688)
Q Consensus 609 ~~ekar 614 (688)
++.++-
T Consensus 92 k~~~~s 97 (1103)
T KOG1420|consen 92 KINNGS 97 (1103)
T ss_pred hhhccc
Confidence 333333
No 182
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=30.49 E-value=4.8e+02 Score=25.19 Aligned_cols=13 Identities=15% Similarity=-0.028 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 005609 641 REVEREAARQALL 653 (688)
Q Consensus 641 re~ereaar~al~ 653 (688)
-+.||+.|+..|+
T Consensus 107 I~~ek~~a~~el~ 119 (159)
T PRK09173 107 IAQAETDAINAVR 119 (159)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555544444
No 183
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=30.48 E-value=4.3e+02 Score=29.41 Aligned_cols=79 Identities=20% Similarity=0.303 Sum_probs=46.4
Q ss_pred hhHHHHhhcccchhhhHHhhhhcccccCCCCChHHHHHHHHHHHHHHHHHHH---------------------------H
Q 005609 562 DKLYRATLLKNRFADTILKAKEKTLSQGDKGDPEKLRREREELELQKRKEKA---------------------------R 614 (688)
Q Consensus 562 ~k~~raa~l~~rfad~i~ka~~k~l~~~~~~dp~kl~~e~e~le~~~~~eka---------------------------r 614 (688)
++.|++| |..+|.+.-.-+...| |=||+=+|-+|++|.|-+. +
T Consensus 62 e~qlk~a------a~~llq~kirk~~e~~----eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~ 131 (401)
T PF06785_consen 62 EKQLKTA------AGQLLQTKIRKITEKD----EGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQH 131 (401)
T ss_pred HHHHHHH------HHHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHH
Confidence 4566666 7888877755554332 3588889999988877543 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005609 615 LQAEAKAAEEARRQAEADAAVEARRKREVEREAARQ 650 (688)
Q Consensus 615 ~~a~~~aae~a~r~~~~~~~~e~k~~re~ereaar~ 650 (688)
|++.+..+++.-.+-++...+=.+.-+|+|-|++-.
T Consensus 132 LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~L 167 (401)
T PF06785_consen 132 LEGLIRHLREENQCLQLQLDALQQECGEKEEESQTL 167 (401)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHH
Confidence 444444444444443444444444555666665543
No 184
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=30.43 E-value=3.3e+02 Score=28.51 Aligned_cols=10 Identities=10% Similarity=0.288 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 005609 644 EREAARQALL 653 (688)
Q Consensus 644 ereaar~al~ 653 (688)
..+.+..|++
T Consensus 122 ~~ei~~la~~ 131 (246)
T TIGR03321 122 RRRTGAEVFA 131 (246)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 185
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=30.14 E-value=4e+02 Score=28.16 Aligned_cols=12 Identities=8% Similarity=0.235 Sum_probs=4.8
Q ss_pred HHHHHHHHHhhh
Q 005609 646 EAARQALLKVNS 657 (688)
Q Consensus 646 eaar~al~~me~ 657 (688)
+.+..+++--+|
T Consensus 124 ~v~~la~~~A~k 135 (250)
T PRK14474 124 QTGQQMVKIIRA 135 (250)
T ss_pred HHHHHHHHHHHH
Confidence 333444443344
No 186
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=30.13 E-value=3.9e+02 Score=27.58 Aligned_cols=12 Identities=17% Similarity=0.346 Sum_probs=6.9
Q ss_pred HHHHHHHHhhhc
Q 005609 647 AARQALLKVNSV 658 (688)
Q Consensus 647 aar~al~~me~t 658 (688)
++|+++..++++
T Consensus 76 ~~R~~~l~aKqe 87 (207)
T PRK01005 76 AGKRSLESLKQA 87 (207)
T ss_pred HHHHHHHHHHHH
Confidence 446666666555
No 187
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=29.99 E-value=1.5e+02 Score=33.45 Aligned_cols=61 Identities=28% Similarity=0.330 Sum_probs=41.7
Q ss_pred cccchhh---hHHhhhhcc---cccCCCCChHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q 005609 570 LKNRFAD---TILKAKEKT---LSQGDKGDPEKLRREREELELQ------KRKEKARLQAEAKAAEEARRQAE 630 (688)
Q Consensus 570 l~~rfad---~i~ka~~k~---l~~~~~~dp~kl~~e~e~le~~------~~~ekar~~a~~~aae~a~r~~~ 630 (688)
||.||=- -|++||.-+ |...-.-|-++=++-|+-|++. |-+|-+-|-+|.|.-|+++++++
T Consensus 173 LKeRyY~v~r~l~kAr~~s~sdllk~~~yd~e~Er~RKk~L~~L~sRt~~qvaEEe~Ll~E~KkiEarkke~~ 245 (445)
T KOG2656|consen 173 LKERYYSVCRKLLKARAPSNSDLLKSLVYDAEHERERKKYLERLLSRTPEQVAEEEALLVELKKIEARKKERL 245 (445)
T ss_pred HHHHHHHHHHHHHHccCCCchhhhhccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 6777754 478888765 5667778888888888888874 55566667777776665554433
No 188
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=29.94 E-value=4.7e+02 Score=24.51 Aligned_cols=13 Identities=31% Similarity=0.238 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 005609 641 REVEREAARQALL 653 (688)
Q Consensus 641 re~ereaar~al~ 653 (688)
-+.|+++|+..|+
T Consensus 110 i~~e~~~a~~~l~ 122 (140)
T PRK07353 110 IEQQKQAALAQLE 122 (140)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 189
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=29.55 E-value=2.5e+02 Score=32.25 Aligned_cols=17 Identities=12% Similarity=0.286 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHhhh
Q 005609 641 REVEREAARQALLKVNS 657 (688)
Q Consensus 641 re~ereaar~al~~me~ 657 (688)
+++..+.+..|++--+|
T Consensus 115 ~elr~ei~~lAv~~A~k 131 (445)
T PRK13428 115 RQLRLELGHESVRQAGE 131 (445)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 190
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=29.21 E-value=4e+02 Score=29.19 Aligned_cols=15 Identities=20% Similarity=0.177 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhhhcc
Q 005609 645 REAARQALLKVNSVQ 659 (688)
Q Consensus 645 reaar~al~~me~t~ 659 (688)
.+.++..|.+.+|||
T Consensus 122 ~~~~~~~L~~L~ktN 136 (314)
T PF04111_consen 122 YEYASNQLDRLRKTN 136 (314)
T ss_dssp HHHHHHHHHCHHT--
T ss_pred HHHHHHHHHHHHhcC
Confidence 345666777777883
No 191
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=29.04 E-value=4.6e+02 Score=24.55 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 005609 635 VEARRKREVEREAARQALLKVN 656 (688)
Q Consensus 635 ~e~k~~re~ereaar~al~~me 656 (688)
.+++.+-+...+.|+..+....
T Consensus 93 ~~a~~ea~~~~~~a~~~i~~e~ 114 (140)
T PRK07353 93 AEAQAEAQASKEKARREIEQQK 114 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555554443
No 192
>COG2118 DNA-binding protein [General function prediction only]
Probab=28.87 E-value=2.1e+02 Score=27.02 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=15.7
Q ss_pred HHHHHHHHHhhhccCCcccccch
Q 005609 646 EAARQALLKVNSVQMGSHLFLPR 668 (688)
Q Consensus 646 eaar~al~~me~t~~~~~~~~~~ 668 (688)
||+-.+|-+|-.|+.=.|.++-+
T Consensus 70 eavE~qLi~LaqtGri~~~I~e~ 92 (116)
T COG2118 70 EAVENQLIQLAQTGRITHKIDEE 92 (116)
T ss_pred HHHHHHHHHHHHcCCCCCCCCHH
Confidence 67777888888886555665433
No 193
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=28.69 E-value=40 Score=36.97 Aligned_cols=8 Identities=13% Similarity=0.322 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 005609 272 FFEARWKA 279 (688)
Q Consensus 272 ~Fe~~~k~ 279 (688)
+|.+-|-.
T Consensus 163 ~F~dDlF~ 170 (407)
T KOG2130|consen 163 YFRDDLFQ 170 (407)
T ss_pred hhhHHHHH
Confidence 44444433
No 194
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=28.31 E-value=5.1e+02 Score=25.76 Aligned_cols=10 Identities=20% Similarity=0.288 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 005609 643 VEREAARQAL 652 (688)
Q Consensus 643 ~ereaar~al 652 (688)
.|++.|+.+|
T Consensus 131 ~Ek~~a~~~l 140 (184)
T CHL00019 131 FEQQRAINQV 140 (184)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 195
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=28.22 E-value=5.5e+02 Score=24.77 Aligned_cols=11 Identities=27% Similarity=0.398 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 005609 642 EVEREAARQAL 652 (688)
Q Consensus 642 e~ereaar~al 652 (688)
+.|++.|+..|
T Consensus 111 ~~e~~~a~~~l 121 (159)
T PRK13461 111 QREKEKAEYEI 121 (159)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 196
>PTZ00491 major vault protein; Provisional
Probab=28.13 E-value=1.3e+02 Score=37.11 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=10.6
Q ss_pred EEeCCCCCH---HHHHHHHHHHHHH
Q 005609 375 EIDIDDLSN---DTLLTLRKLLDDY 396 (688)
Q Consensus 375 EIDId~L~~---eTL~eL~~yV~~~ 396 (688)
+||++.-++ .-+|...+||-++
T Consensus 551 ~F~v~~~d~~~~~k~Fsv~DFvGd~ 575 (850)
T PTZ00491 551 YFDVTDGNPEDAQKCFSVPDFVGDA 575 (850)
T ss_pred EEecCCCChhhHhheeccCchHHHH
Confidence 344444444 3555555555444
No 197
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=28.00 E-value=5.4e+02 Score=24.56 Aligned_cols=15 Identities=13% Similarity=0.229 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHhhh
Q 005609 643 VEREAARQALLKVNS 657 (688)
Q Consensus 643 ~ereaar~al~~me~ 657 (688)
+..+++..|++-.+|
T Consensus 120 l~~~~~~lA~~~a~k 134 (156)
T PRK05759 120 LRKQVADLAVAGAEK 134 (156)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333334433333
No 198
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=28.00 E-value=1.7e+02 Score=28.32 Aligned_cols=62 Identities=31% Similarity=0.313 Sum_probs=36.5
Q ss_pred hhhHHhhhhcc-c-c--cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005609 575 ADTILKAKEKT-L-S--QGDKGDPEKLRREREELELQKRKEKARLQAEAKAAEEARRQAEADAAVEARRKREVEREA 647 (688)
Q Consensus 575 ad~i~ka~~k~-l-~--~~~~~dp~kl~~e~e~le~~~~~ekar~~a~~~aae~a~r~~~~~~~~e~k~~re~erea 647 (688)
.|.|+|||+-- | . =|.... |..|.+.=++|++|.+.|++.++.+-.+++...++=+++=++.
T Consensus 76 ~dIi~kakqIe~LIdsLPg~~~s-----------ee~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i~~i 141 (144)
T PF11221_consen 76 TDIIRKAKQIEYLIDSLPGIEVS-----------EEEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQELIREI 141 (144)
T ss_dssp HHHHHHHHHHHHHHHHSTTSSS------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCCCCCCC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68889999742 2 1 232222 4455666677888888888777765555555544444444433
No 199
>PF05835 Synaphin: Synaphin protein; InterPro: IPR008849 This family consists of several eukaryotic synaphin 1 and 2 proteins. Synaphin/complexin is a cytosolic protein that preferentially binds to syntaxin within the SNARE complex. Synaphin promotes SNAREs to form precomplexes that oligomerise into higher order structures. A peptide from the central, syntaxin binding domain of synaphin competitively inhibits these two proteins from interacting and prevents SNARE complexes from oligomerising. It is thought that oligomerisation of SNARE complexes into a higher order structure creates a SNARE scaffold for efficient, regulated fusion of synaptic vesicles []. Synaphin promotes neuronal exocytosis by promoting interaction between the complementary syntaxin and synaptobrevin transmembrane regions that reside in opposing membranes prior to fusion [].; GO: 0019905 syntaxin binding, 0006836 neurotransmitter transport; PDB: 3RL0_m 3RK3_E 1L4A_E 1KIL_E.
Probab=27.99 E-value=1e+02 Score=30.00 Aligned_cols=36 Identities=33% Similarity=0.444 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005609 610 KEKARLQAEAKAAEEARRQAEADAAVEARRKREVEREAARQALL 653 (688)
Q Consensus 610 ~ekar~~a~~~aae~a~r~~~~~~~~e~k~~re~ereaar~al~ 653 (688)
++-...|++...+++.|+. .-+++|.|||.-|+.+.
T Consensus 34 ee~~E~qeal~eeee~Rk~--------k~~k~eaERe~mRq~IR 69 (139)
T PF05835_consen 34 EEEEEYQEALREEEEERKA--------KHAKMEAEREKMRQHIR 69 (139)
T ss_dssp HCCHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 4444455555544443331 23466667777776654
No 200
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=27.55 E-value=1.9e+02 Score=32.30 Aligned_cols=48 Identities=44% Similarity=0.402 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 005609 600 EREELELQKRKEKAR--LQAEAKAAEEARRQAEADA-AVEARRKREVEREAA 648 (688)
Q Consensus 600 e~e~le~~~~~ekar--~~a~~~aae~a~r~~~~~~-~~e~k~~re~ereaa 648 (688)
|++++++.+.-+|.+ +|||+.| +--|++-+||| ++|++-+-|-||-++
T Consensus 290 e~~r~~klaEAnk~~~~~qaqAEA-~~irk~geAEA~~ieA~akaeaeqm~~ 340 (428)
T KOG2668|consen 290 EVERETKLAEANKELYNKQAQAEA-ELIRKQGEAEAFAIEADAKAEAEQMAA 340 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHhhhhhHHHHHHH
Confidence 456666666655554 3444432 33445555555 555555555555443
No 201
>PF07046 CRA_rpt: Cytoplasmic repetitive antigen (CRA) like repeat; InterPro: IPR009761 This family consists of several repeats of around 42 residues in length. These repeated sequences are found in multiple copies in Trypanosoma cruzi antigens, Q26907 from SWISSPROT contains 23 copies of this repeat [].
Probab=27.47 E-value=1.9e+02 Score=22.33 Aligned_cols=11 Identities=45% Similarity=0.652 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 005609 634 AVEARRKREVE 644 (688)
Q Consensus 634 ~~e~k~~re~e 644 (688)
.+|+..+|-.|
T Consensus 27 ~aEaeKqraaE 37 (42)
T PF07046_consen 27 AAEAEKQRAAE 37 (42)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 202
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=27.47 E-value=6e+02 Score=26.12 Aligned_cols=62 Identities=29% Similarity=0.366 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 005609 594 PEKLRREREELELQKRKEK---ARLQAEAKAAEE-----ARRQAEADAAVEARRKREVEREAARQALLKVNSV 658 (688)
Q Consensus 594 p~kl~~e~e~le~~~~~ek---ar~~a~~~aae~-----a~r~~~~~~~~e~k~~re~ereaar~al~~me~t 658 (688)
--+|.-+++-+||.-.+-. +|||+.+..|.. +.++.+ ....-..-+-||.+|+..|.++.+-
T Consensus 107 R~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q---~r~ea~aL~~e~~aaqaQL~~lQ~q 176 (192)
T PF11180_consen 107 RAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQ---ARQEAQALEAERRAAQAQLRQLQRQ 176 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666777777654433 366666654432 222222 1111123455666777666555443
No 203
>PTZ00436 60S ribosomal protein L19-like protein; Provisional
Probab=27.37 E-value=1.9e+02 Score=31.69 Aligned_cols=49 Identities=31% Similarity=0.360 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 005609 601 REELELQKRKEKARLQAEAKAAEEARRQAEA---DAAVEARRKREVEREAARQ 650 (688)
Q Consensus 601 ~e~le~~~~~ekar~~a~~~aae~a~r~~~~---~~~~e~k~~re~ereaar~ 650 (688)
+|-|+.. +.|+.|.......+++.|-+.+. .+.-..-++||.|||-||.
T Consensus 139 ~e~I~k~-KaE~~R~K~L~dQ~eArR~k~~~~r~~~~~~~~~~~~~~~~~~~~ 190 (357)
T PTZ00436 139 MEHIHKV-KNEKKKERQLAEQLAAKRLKDEQHRHKARKQELRKREKDRERARR 190 (357)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHH
Confidence 4444443 33445544444444443333321 2333334578888888774
No 204
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=27.21 E-value=5.7e+02 Score=24.66 Aligned_cols=11 Identities=18% Similarity=0.145 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 005609 642 EVEREAARQAL 652 (688)
Q Consensus 642 e~ereaar~al 652 (688)
+.-.+.|+..+
T Consensus 100 ~~~~~~a~~~i 110 (159)
T PRK13461 100 DLIIERAKLEA 110 (159)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 205
>KOG4326 consensus Mitochondrial F1F0-ATP synthase, subunit e [Energy production and conversion]
Probab=27.06 E-value=3.3e+02 Score=23.71 Aligned_cols=17 Identities=41% Similarity=0.421 Sum_probs=10.2
Q ss_pred CCCCCCCch-hHHHHhhc
Q 005609 554 PNERQVSPD-KLYRATLL 570 (688)
Q Consensus 554 ~~~~~~sp~-k~~raa~l 570 (688)
|+.++|||- |.=|.+.|
T Consensus 3 p~pV~vSPLIkfGRysaL 20 (81)
T KOG4326|consen 3 PPPVTVSPLIKFGRYSAL 20 (81)
T ss_pred CCCeeecHHHHhhHHHHH
Confidence 467888884 44444443
No 206
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=26.95 E-value=3.4e+02 Score=32.48 Aligned_cols=40 Identities=20% Similarity=0.192 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhhhccCCcccccchhhcc
Q 005609 633 AAVEARRKREVEREAARQA-LLKVNSVQMGSHLFLPRFLFW 672 (688)
Q Consensus 633 ~~~e~k~~re~ereaar~a-l~~me~t~~~~~~~~~~~~~~ 672 (688)
...+.++--+|+|+-++.- +++||-...+.|.+-.+-|.|
T Consensus 490 L~e~~~~ve~L~~~l~~l~k~~~lE~sG~g~pvk~ve~~t~ 530 (652)
T COG2433 490 LEEKKKRVEELERKLAELRKMRKLELSGKGTPVKVVEKLTL 530 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcceehhhhhhH
Confidence 3555556667777777654 677777788888766665543
No 207
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=26.95 E-value=5.8e+02 Score=24.61 Aligned_cols=7 Identities=29% Similarity=0.392 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 005609 648 ARQALLK 654 (688)
Q Consensus 648 ar~al~~ 654 (688)
|++.++.
T Consensus 103 a~~~I~~ 109 (159)
T PRK09173 103 AEQKIAQ 109 (159)
T ss_pred HHHHHHH
Confidence 4443333
No 208
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=26.79 E-value=3.8e+02 Score=27.99 Aligned_cols=55 Identities=29% Similarity=0.280 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhh
Q 005609 602 EELELQKRKEKARLQAEAKAAEEARRQAEADA--AVEARRKREVEREAARQALLKVN 656 (688)
Q Consensus 602 e~le~~~~~ekar~~a~~~aae~a~r~~~~~~--~~e~k~~re~ereaar~al~~me 656 (688)
|||-....---.+|++-..+|.|.-|+++.+. =...=++--+||--||..||+.-
T Consensus 4 EELRq~Ll~TTlELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 4 EELRQKLLYTTLELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555555544332 23344455678999999999644
No 209
>KOG2880 consensus SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain [Signal transduction mechanisms]
Probab=26.06 E-value=3.2e+02 Score=30.67 Aligned_cols=66 Identities=20% Similarity=0.181 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCCcccccch
Q 005609 603 ELELQKRKEKARLQAEAKAAEEARRQAEADAAVEARRKREVEREAARQALLKVNSV-QMGSHLFLPR 668 (688)
Q Consensus 603 ~le~~~~~ekar~~a~~~aae~a~r~~~~~~~~e~k~~re~ereaar~al~~me~t-~~~~~~~~~~ 668 (688)
+.+....+-..|-|-|-..--++.++-.||..-++..+|+.|+|.-|-|+++-+.- +...+++.+.
T Consensus 96 ~~deL~~~ll~rY~~eyn~y~~~K~k~~~E~~k~le~~~~~E~e~kr~aq~k~Q~l~~~~f~~~~~~ 162 (424)
T KOG2880|consen 96 RIDELKAKLLKRYNVEYNEYDHSKKKNLAERFKKLEVQREEETERKRSAQTKQQQLESSQFSPLEPP 162 (424)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHhhcchhhHHHHHHHHHHhhhcCCcccCCccCch
Confidence 33334444444445444443344444444444445557777777777776666655 6666665443
No 210
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=25.57 E-value=3.7e+02 Score=30.74 Aligned_cols=49 Identities=24% Similarity=0.293 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 005609 596 KLRREREELELQKRKEKARLQAEAKAAE---EARRQAEADAAVEARRKREVERE 646 (688)
Q Consensus 596 kl~~e~e~le~~~~~ekar~~a~~~aae---~a~r~~~~~~~~e~k~~re~ere 646 (688)
|||-|.|+|-.... .|.+++++|-++ +.+-.+++-+....|-++|+||.
T Consensus 257 ~l~~EveRlrt~l~--~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erR 308 (552)
T KOG2129|consen 257 KLQAEVERLRTYLS--RAQKSYQEKLMQYRAEEVDHREENERLQRKLINELERR 308 (552)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 67777777765443 344555555433 33333444455666777888874
No 211
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=25.47 E-value=5.7e+02 Score=25.36 Aligned_cols=10 Identities=10% Similarity=0.371 Sum_probs=5.2
Q ss_pred hHHhhhhccc
Q 005609 577 TILKAKEKTL 586 (688)
Q Consensus 577 ~i~ka~~k~l 586 (688)
.++..|++..
T Consensus 54 ~~L~~R~~~I 63 (184)
T PRK13455 54 GMLDKRAEGI 63 (184)
T ss_pred HHHHHHHHHH
Confidence 3455665444
No 212
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=25.36 E-value=3.6e+02 Score=28.35 Aligned_cols=17 Identities=24% Similarity=0.216 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHhhhc
Q 005609 642 EVEREAARQALLKVNSV 658 (688)
Q Consensus 642 e~ereaar~al~~me~t 658 (688)
|+-+...-++.++|.+.
T Consensus 186 eK~k~k~~~~~~k~~~a 202 (241)
T cd07656 186 EKRQAKYSEAKLKCTKA 202 (241)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555666777776
No 213
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=25.32 E-value=81 Score=26.78 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=23.1
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhh
Q 005609 224 GTIKEKMASNAYSSPLEFLADVRLTF 249 (688)
Q Consensus 224 ~TIkkKL~~~~Y~S~~eF~~DvrLIF 249 (688)
..|+..+..|.|.|..+++.|.-.+|
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~l 37 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLL 37 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHH
Confidence 36899999999999999999987766
No 214
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=25.28 E-value=1.8e+02 Score=33.68 Aligned_cols=64 Identities=25% Similarity=0.333 Sum_probs=36.4
Q ss_pred CCCchhHHHHhhcccchhhhH--Hhhhhcccc---cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005609 558 QVSPDKLYRATLLKNRFADTI--LKAKEKTLS---QGDKGDPEKLRREREELELQKRKEKARLQAEAKA 621 (688)
Q Consensus 558 ~~sp~k~~raa~l~~rfad~i--~ka~~k~l~---~~~~~dp~kl~~e~e~le~~~~~ekar~~a~~~a 621 (688)
+++|+-+==--+-=+.|+||| |=|+-|.|. +.-..|=++|+.|-|+|.+|+.--..||+..+.+
T Consensus 41 ~ltpee~kalGiegDTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~ 109 (472)
T TIGR03752 41 ELSPEELKALGIEGDTPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQS 109 (472)
T ss_pred cCCcchhHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 677775433345567778887 345554442 1122333566666676666666666666655544
No 215
>KOG2117 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.67 E-value=1.5e+02 Score=33.17 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 005609 599 REREELELQKRKEKA----RLQAEAKAAEEA 625 (688)
Q Consensus 599 ~e~e~le~~~~~eka----r~~a~~~aae~a 625 (688)
.++|.+++.+..++- =||-.+++|+-+
T Consensus 81 kk~e~~~~~~~~~~r~kPkYi~nLie~aerR 111 (379)
T KOG2117|consen 81 KKREQLPRLRLREKRRKPKYIENLIEAAERR 111 (379)
T ss_pred HHhhhhHhhhhhccccccHHHHHHHHHHHHH
Confidence 445555555555544 366677766633
No 216
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=24.67 E-value=1.8e+02 Score=24.34 Aligned_cols=20 Identities=35% Similarity=0.227 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005609 612 KARLQAEAKAAEEARRQAEA 631 (688)
Q Consensus 612 kar~~a~~~aae~a~r~~~~ 631 (688)
-+-|+|||.+++++..++.|
T Consensus 30 Ia~L~aEI~R~~~~~~~K~a 49 (59)
T PF06698_consen 30 IALLEAEIARLEAAIAKKSA 49 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46677888887777765554
No 217
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=24.27 E-value=4.6e+02 Score=29.73 Aligned_cols=38 Identities=37% Similarity=0.386 Sum_probs=25.5
Q ss_pred hhhHHhhhhcccccCCCCChHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q 005609 575 ADTILKAKEKTLSQGDKGDPEKLRREREELELQ-----KRKEKARLQAEAKAA 622 (688)
Q Consensus 575 ad~i~ka~~k~l~~~~~~dp~kl~~e~e~le~~-----~~~ekar~~a~~~aa 622 (688)
||++-.|||. ..||+.+.++|+- ...||+.-+|++++|
T Consensus 292 ~~I~~VarEN----------s~LqrQKle~e~~l~a~qeakek~~KEAqarea 334 (442)
T PF06637_consen 292 AGIERVAREN----------SDLQRQKLEAEQGLQASQEAKEKAGKEAQAREA 334 (442)
T ss_pred hhHHHHHHhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888883 3577777777775 345666666666555
No 218
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=24.23 E-value=4.8e+02 Score=25.75 Aligned_cols=41 Identities=32% Similarity=0.286 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005609 614 RLQAEAKAAEEARRQAEADAAVEARRKREVEREAARQALLKV 655 (688)
Q Consensus 614 r~~a~~~aae~a~r~~~~~~~~e~k~~re~ereaar~al~~m 655 (688)
+||.+++.-+.|.. +.|-.=.+.+.+||.||+.|.-+||.+
T Consensus 89 ~Lqd~~~~hksa~~-aLas~L~~Lr~q~e~e~keaa~qL~~~ 129 (152)
T PF15186_consen 89 WLQDQAEEHKSAAW-ALASELKRLREQREMERKEAAFQLQLT 129 (152)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666665544432 111112334456777777776665443
No 219
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=23.70 E-value=4.8e+02 Score=28.87 Aligned_cols=12 Identities=17% Similarity=0.041 Sum_probs=8.2
Q ss_pred HHHHHHHHhhhc
Q 005609 647 AARQALLKVNSV 658 (688)
Q Consensus 647 aar~al~~me~t 658 (688)
..+..|+-||++
T Consensus 295 ~~~~~lea~~~~ 306 (334)
T PRK11029 295 AFIRSLRAYENS 306 (334)
T ss_pred HHHHHHHHHHHH
Confidence 445667778877
No 220
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=23.64 E-value=6.7e+02 Score=25.69 Aligned_cols=27 Identities=19% Similarity=0.455 Sum_probs=10.8
Q ss_pred hHHhhhhcccccCCCCChHHHHHHHHHH
Q 005609 577 TILKAKEKTLSQGDKGDPEKLRREREEL 604 (688)
Q Consensus 577 ~i~ka~~k~l~~~~~~dp~kl~~e~e~l 604 (688)
.||..|+..+.. +-.+-++++.|-+++
T Consensus 80 ~vLe~R~~~I~~-~L~~Ae~~k~eAe~~ 106 (204)
T PRK09174 80 GIIETRRDRIAQ-DLDQAARLKQEADAA 106 (204)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 344555543321 222334444443333
No 221
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=23.62 E-value=2.2e+02 Score=30.77 Aligned_cols=8 Identities=38% Similarity=0.858 Sum_probs=3.1
Q ss_pred hcccchhh
Q 005609 569 LLKNRFAD 576 (688)
Q Consensus 569 ~l~~rfad 576 (688)
|-+.|+.|
T Consensus 115 LaRkR~~~ 122 (276)
T PF12037_consen 115 LARKRYQD 122 (276)
T ss_pred HHHHHHHH
Confidence 33344433
No 222
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=23.59 E-value=5.3e+02 Score=29.23 Aligned_cols=43 Identities=33% Similarity=0.419 Sum_probs=28.5
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005609 589 GDKGDPEKLRREREELELQKRKEKARLQAEAKAAEEARRQAEA 631 (688)
Q Consensus 589 ~~~~dp~kl~~e~e~le~~~~~ekar~~a~~~aae~a~r~~~~ 631 (688)
+=..|-+..-+|-.+|+++..+--..|+|-..|.|.|.+.|.|
T Consensus 289 ~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqa 331 (442)
T PF06637_consen 289 SLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQA 331 (442)
T ss_pred HHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566677778888887777777777766666666555443
No 223
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=23.46 E-value=5.8e+02 Score=26.04 Aligned_cols=58 Identities=31% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005609 598 RREREELELQKRKEKARLQAEAKA-AEEARRQAEADAAVEARRKREVEREAARQALLKV 655 (688)
Q Consensus 598 ~~e~e~le~~~~~ekar~~a~~~a-ae~a~r~~~~~~~~e~k~~re~ereaar~al~~m 655 (688)
+.|.+++....++|-.++.+++++ |+++.+...+.+..|+-+.+....-.|......|
T Consensus 16 ~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~A~le~r~~ 74 (194)
T COG1390 16 EEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALLEARRK 74 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 224
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=23.09 E-value=2.7e+02 Score=27.32 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005609 597 LRREREELELQKRKEKARLQAEAKAA 622 (688)
Q Consensus 597 l~~e~e~le~~~~~ekar~~a~~~aa 622 (688)
+.+=++||+..+..++.++.++++.|
T Consensus 10 ~~~L~~El~~L~~~~r~~~~~~i~~A 35 (156)
T TIGR01461 10 YEKLKQELNYLWREERPEVTQKVTWA 35 (156)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 33445556666666666666666666
No 225
>COG1422 Predicted membrane protein [Function unknown]
Probab=22.95 E-value=3e+02 Score=28.42 Aligned_cols=25 Identities=8% Similarity=-0.007 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 005609 634 AVEARRKREVEREAARQALLKVNSV 658 (688)
Q Consensus 634 ~~e~k~~re~ereaar~al~~me~t 658 (688)
..-.||=+|.+-|+.+-+.+.|+-+
T Consensus 97 ~~~lkkLq~~qmem~~~Q~elmk~q 121 (201)
T COG1422 97 MKKLKKLQEKQMEMMDDQRELMKMQ 121 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345555666667777777777765
No 226
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=22.59 E-value=4.5e+02 Score=30.23 Aligned_cols=7 Identities=29% Similarity=0.520 Sum_probs=3.1
Q ss_pred cchhhhH
Q 005609 572 NRFADTI 578 (688)
Q Consensus 572 ~rfad~i 578 (688)
.|.+|+-
T Consensus 198 ~rl~~lt 204 (506)
T KOG2507|consen 198 SRLCDLT 204 (506)
T ss_pred hHHHHHH
Confidence 4444443
No 227
>KOG3756 consensus Pinin (desmosome-associated protein) [Cytoskeleton]
Probab=22.51 E-value=2.7e+02 Score=30.64 Aligned_cols=39 Identities=18% Similarity=0.150 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHhhhc-----cCCcccccchhhcccccceee
Q 005609 641 REVEREAARQALLKVNSV-----QMGSHLFLPRFLFWFSTEHFS 679 (688)
Q Consensus 641 re~ereaar~al~~me~t-----~~~~~~~~~~~~~~~~~~~~~ 679 (688)
|-+++..|++.|.+--.- -.+|+-+-.--|||.-+-|.+
T Consensus 206 R~l~~kka~~q~~e~w~~~~kk~s~~IRTKTkPhlFy~P~k~~p 249 (340)
T KOG3756|consen 206 RLLEQKKALAQLFEEWNEHNKKISNYIRTKTKPHLFYRPVKHLP 249 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCceeeccccCCh
Confidence 344555555555543322 333333333344444444443
No 228
>PHA00451 protein kinase
Probab=22.38 E-value=4.6e+02 Score=28.65 Aligned_cols=69 Identities=25% Similarity=0.214 Sum_probs=39.0
Q ss_pred CCCChHHHHHHHHHHHHHHHHH-----HH------HHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHH
Q 005609 590 DKGDPEKLRREREELELQKRKE-----KA------RLQAEAKAAEEARRQAEAD---A---AVEARRKREVEREAARQAL 652 (688)
Q Consensus 590 ~~~dp~kl~~e~e~le~~~~~e-----ka------r~~a~~~aae~a~r~~~~~---~---~~e~k~~re~ereaar~al 652 (688)
=..||+-|..|.|.+..+.-=| || ..|..-|||..+||++... - =+..++.+-++|...+.|-
T Consensus 226 F~ldPd~LiaEvEaia~~~~IeRck~rKakrdpng~fq~~rkaa~K~Rk~~~k~~~r~ak~l~~~r~~~~~~~Rne~rA~ 305 (362)
T PHA00451 226 FPLDPDELIAEVEAIANQRMIERCKNRKAKRDPNGTFQVARKAAMKRRKRNRKLRARNAKELAAMRMEANQIRRNEPRAR 305 (362)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHH
Confidence 3456666666666555443333 22 4677777877777654421 0 1223444556666677777
Q ss_pred HHhhhc
Q 005609 653 LKVNSV 658 (688)
Q Consensus 653 ~~me~t 658 (688)
.-|-.+
T Consensus 306 m~~G~~ 311 (362)
T PHA00451 306 MLMGDK 311 (362)
T ss_pred HHhhhh
Confidence 777665
No 229
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=22.25 E-value=3.2e+02 Score=28.77 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=35.6
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhc
Q 005609 595 EKLRREREE-LELQKRKEKARLQAEAKAAEEARRQAEADAAVEAR-RKREVEREAARQALLKVNSV 658 (688)
Q Consensus 595 ~kl~~e~e~-le~~~~~ekar~~a~~~aae~a~r~~~~~~~~e~k-~~re~ereaar~al~~me~t 658 (688)
+||..|+-+ -...-.+-|..-....+.+|.||++.+ .+.++ ++.++-+++--++..+|..+
T Consensus 115 ~kl~~e~~~~~~~~l~K~K~~Y~~~~~~~e~ar~K~~---~a~~~gk~~~Ka~~k~~~~~~km~~~ 177 (234)
T cd07686 115 QQIEAEMYKVTKTELEKLKCSYRQLTKEVNSAKEKYK---DAVAKGKETEKARERYDKATMKLHML 177 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HhhhcccchHHHHHHHHHHHHHHHhh
Confidence 344444433 223333444555666677777877765 44443 34566666667777788776
No 230
>PF13025 DUF3886: Protein of unknown function (DUF3886)
Probab=22.21 E-value=1.6e+02 Score=25.37 Aligned_cols=29 Identities=38% Similarity=0.477 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005609 615 LQAEAKAAEEARRQAEADAAVEARRKREV 643 (688)
Q Consensus 615 ~~a~~~aae~a~r~~~~~~~~e~k~~re~ 643 (688)
+..+.++.|+.|+.++.+...+.+++||+
T Consensus 25 ~k~eLk~~ee~r~e~e~~~~~~erk~rEK 53 (70)
T PF13025_consen 25 KKQELKAEEEKRKEEERARRREERKEREK 53 (70)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
No 231
>PF15437 PGBA_C: Plasminogen-binding protein pgbA C-terminal
Probab=22.16 E-value=4.3e+02 Score=23.59 Aligned_cols=45 Identities=38% Similarity=0.468 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 005609 609 RKEKARLQAEAKAAEEARRQAEADA-AVEARRKREVEREAARQALL 653 (688)
Q Consensus 609 ~~ekar~~a~~~aae~a~r~~~~~~-~~e~k~~re~ereaar~al~ 653 (688)
+|||-||-.+-|.|-+.+|-+|-+. +-|---+-|+|=|--|.||.
T Consensus 37 kEekrrLkeEkKkAKAeqrA~EfEqRakehqErDEkElEERrKALe 82 (86)
T PF15437_consen 37 KEEKRRLKEEKKKAKAEQRAREFEQRAKEHQERDEKELEERRKALE 82 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4555555555555555554333211 22222233444455566664
No 232
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=21.73 E-value=7.4e+02 Score=24.00 Aligned_cols=9 Identities=22% Similarity=0.150 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 005609 645 REAARQALL 653 (688)
Q Consensus 645 reaar~al~ 653 (688)
.+.+..|+.
T Consensus 126 ~~i~~la~~ 134 (164)
T PRK14473 126 SQIADLVTL 134 (164)
T ss_pred HHHHHHHHH
Confidence 333333333
No 233
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=21.57 E-value=6.6e+02 Score=26.71 Aligned_cols=47 Identities=30% Similarity=0.285 Sum_probs=29.1
Q ss_pred ccchhhhHHhhhhcccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005609 571 KNRFADTILKAKEKTLSQGDKGDPEKLRREREELELQKRKEKARLQAEAKAA 622 (688)
Q Consensus 571 ~~rfad~i~ka~~k~l~~~~~~dp~kl~~e~e~le~~~~~ekar~~a~~~aa 622 (688)
...|.+.+++|++++=. --+++|.+.|.+....+++++++.+++++.
T Consensus 76 ~~~a~~~l~~~~~ea~~-----~l~~a~~q~e~~~~ea~~e~e~~~~~a~~e 122 (281)
T PRK06669 76 EEEAKEELLKKTDEASS-----IIEKLQMQIEREQEEWEEELERLIEEAKAE 122 (281)
T ss_pred hHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777765331 124667777777766666666666555543
No 234
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.23 E-value=5.4e+02 Score=28.37 Aligned_cols=6 Identities=0% Similarity=0.429 Sum_probs=2.3
Q ss_pred HHHHHH
Q 005609 355 IIDFLR 360 (688)
Q Consensus 355 II~II~ 360 (688)
|..|.+
T Consensus 78 v~~i~N 83 (309)
T TIGR00570 78 VLKIYN 83 (309)
T ss_pred HHHHHc
Confidence 333443
No 235
>PF12848 ABC_tran_2: ABC transporter
Probab=21.21 E-value=5.1e+02 Score=21.94 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=23.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005609 592 GDPEKLRREREELELQKRKEKARLQAEAKAAEEARRQAE 630 (688)
Q Consensus 592 ~dp~kl~~e~e~le~~~~~ekar~~a~~~aae~a~r~~~ 630 (688)
|+-.--...+++....+.......+.+++..++.-++-.
T Consensus 13 GnY~~y~~~k~~~~~~~~~~~~~~~k~~~~l~~~i~r~~ 51 (85)
T PF12848_consen 13 GNYSDYLEQKEERRERQERQYEKQQKEIKRLEEFIRRFR 51 (85)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344444555666666666666667777766666555444
No 236
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=21.16 E-value=7.8e+02 Score=24.06 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 005609 641 REVEREAARQALLKVNSV 658 (688)
Q Consensus 641 re~ereaar~al~~me~t 658 (688)
.++..+++..|++--+|.
T Consensus 124 ~el~~e~~~lAv~~A~ki 141 (167)
T PRK14475 124 ADVKAAAVDLAAQAAETV 141 (167)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555544443
No 237
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=21.09 E-value=1.7e+02 Score=30.11 Aligned_cols=16 Identities=56% Similarity=0.625 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHH
Q 005609 594 PEKLRREREELELQKR 609 (688)
Q Consensus 594 p~kl~~e~e~le~~~~ 609 (688)
-+|-|+|||+||.|..
T Consensus 128 ~~~~~~~~~~~~~~~~ 143 (197)
T PRK12585 128 IEKARQEREELEERME 143 (197)
T ss_pred HHHHHHhHHHHHHHHH
Confidence 4688889999987754
No 238
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=20.86 E-value=4.8e+02 Score=31.05 Aligned_cols=10 Identities=20% Similarity=0.305 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 005609 608 KRKEKARLQA 617 (688)
Q Consensus 608 ~~~ekar~~a 617 (688)
|+.+..|++.
T Consensus 627 ~RirE~rerE 636 (940)
T KOG4661|consen 627 QRIREERERE 636 (940)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 239
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=20.46 E-value=6.7e+02 Score=24.83 Aligned_cols=6 Identities=17% Similarity=0.329 Sum_probs=2.4
Q ss_pred ccchhh
Q 005609 665 FLPRFL 670 (688)
Q Consensus 665 ~~~~~~ 670 (688)
++..++
T Consensus 104 ~l~~li 109 (188)
T PRK02292 104 LTKSLL 109 (188)
T ss_pred HHHHHH
Confidence 333444
No 240
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=20.36 E-value=2.4e+02 Score=32.05 Aligned_cols=20 Identities=20% Similarity=0.184 Sum_probs=12.3
Q ss_pred CCCCCCCCCCCCchhHHHHh
Q 005609 549 DGESAPNERQVSPDKLYRAT 568 (688)
Q Consensus 549 ~~~~~~~~~~~sp~k~~raa 568 (688)
..|.-+..--|.-+|.|=|+
T Consensus 248 SNWKNpkGYTipLdkRlaad 267 (506)
T KOG2441|consen 248 SNWKNPKGYTIPLDKRLAAD 267 (506)
T ss_pred hcCcCCCCceecchhhhhhc
Confidence 35666666666667777554
No 241
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=20.33 E-value=2.2e+02 Score=29.50 Aligned_cols=17 Identities=47% Similarity=0.499 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005609 632 DAAVEARRKREVEREAA 648 (688)
Q Consensus 632 ~~~~e~k~~re~ereaa 648 (688)
.|-.|.+|+||-|=||+
T Consensus 180 r~~~eRkr~re~eIeae 196 (250)
T KOG1150|consen 180 RANEERKRQREEEIEAE 196 (250)
T ss_pred HHHHHHHHhHHHHHHHH
Confidence 44566666766665555
No 242
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=20.30 E-value=8.1e+02 Score=24.42 Aligned_cols=22 Identities=41% Similarity=0.492 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005609 597 LRREREELELQKRKEKARLQAE 618 (688)
Q Consensus 597 l~~e~e~le~~~~~ekar~~a~ 618 (688)
.++|-++=|.|...|+++||.+
T Consensus 81 r~~EE~~EE~Rl~rere~~q~~ 102 (157)
T PF15236_consen 81 RRREEEEEEERLAREREELQRQ 102 (157)
T ss_pred HHHHhHHHHHHHHHHHHHHHHH
Confidence 3333333444444455555444
No 243
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=20.29 E-value=2.8e+02 Score=32.36 Aligned_cols=12 Identities=33% Similarity=0.614 Sum_probs=6.3
Q ss_pred cccceeeccccC
Q 005609 673 FSTEHFSGVCTD 684 (688)
Q Consensus 673 ~~~~~~~~~~~~ 684 (688)
-.+-|-.+.|.-
T Consensus 476 pks~hr~~~cs~ 487 (708)
T KOG3654|consen 476 PKSRHRSGCCSP 487 (708)
T ss_pred CCccccccccCC
Confidence 344555565653
Done!