Query 005609
Match_columns 688
No_of_seqs 344 out of 1517
Neff 5.6
Searched_HMMs 29240
Date Tue Mar 26 18:49:20 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005609.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2112-2115//hhsearch_pdb/005609hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fkm_X Signaling protein; brom 1.0 1 1 208.4 11.5 108 173-280 16-123 (166)
2 4alg_A Bromodomain-containing 1.0 1 1 205.2 10.6 106 175-280 29-134 (154)
3 2ouo_A HUNK1 protein, bromodom 1.0 1 1 204.5 9.2 106 175-280 19-127 (130)
4 2oss_A HUNK1 protein, bromodom 1.0 1 1 203.6 12.6 105 176-280 19-123 (127)
5 3jvl_A Bromodomain-containing 1.0 1 1 197.8 7.8 105 176-280 7-114 (120)
6 3mb3_A PH-interacting protein; 1.0 1 1 197.1 11.6 106 177-284 20-126 (135)
7 3g0l_A Hwalp4, bromodomain adj 1.0 1 1 196.3 12.7 103 178-282 13-115 (117)
8 3p1f_A CREB-binding protein; s 1.0 1 1 195.8 11.5 110 174-283 7-117 (119)
9 2d9e_A Peregrin; four-helix bu 1.0 1 1 195.5 11.0 106 177-284 6-111 (121)
10 3q2e_A Bromodomain and WD repe 1.0 1 1 195.5 10.4 108 176-285 8-116 (123)
No 1
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=1.00 E-value=1 Score=208.42 Aligned_cols=108 Identities=32% Similarity=0.548 Sum_probs=103.9
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 98839999999999999990899877778856233588861211159999789999972299999999999997632101
Q 005609 173 GTGNVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNA 252 (688)
Q Consensus 173 ~~~~~~~~k~c~~IL~~L~~~~~a~~F~~PVDp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA 252 (688)
.+....|.+.|..||..|++++.+|+|..|||+.++.+||||.||++||||+||++||.++.|.++.+|..||+|||.||
T Consensus 16 ~p~~~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na 95 (166)
T 3fkm_X 16 FQGNKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNC 95 (166)
T ss_dssp -CTTHHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHCCCCCHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 96419999999999999985889712148898232449978876689999999999972799979999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2249999989999999999999999999
Q 005609 253 MTYNPPGNDFHIMADTLRKFFEARWKAI 280 (688)
Q Consensus 253 ~~YN~~~s~V~~~A~~L~~~Fe~~~k~i 280 (688)
++||++++.||.+|..|+.+|++.|+.+
T Consensus 96 ~~yN~~~s~i~~~A~~L~~~f~~~l~~~ 123 (166)
T 3fkm_X 96 SLYNTSNSVVAITGKNIETYFNNQLIVM 123 (166)
T ss_dssp HHSSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 9987999999999999999999999986
No 2
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=1.00 E-value=1 Score=205.15 Aligned_cols=106 Identities=39% Similarity=0.676 Sum_probs=101.0
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 83999999999999999089987777885623358886121115999978999997229999999999999763210122
Q 005609 175 GNVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMT 254 (688)
Q Consensus 175 ~~~~~~k~c~~IL~~L~~~~~a~~F~~PVDp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~ 254 (688)
....+...|..||..|++++.+|+|..|||+.++++||||+||++||||+||++||.++.|.++.+|..||+|||.||++
T Consensus 29 ~t~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~ 108 (154)
T 4alg_A 29 VTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYI 108 (154)
T ss_dssp CBHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 50999999999999998586853205789913224987898838998899999998548999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 49999989999999999999999999
Q 005609 255 YNPPGNDFHIMADTLRKFFEARWKAI 280 (688)
Q Consensus 255 YN~~~s~V~~~A~~L~~~Fe~~~k~i 280 (688)
||++++.||.+|..|+++|++.|+.+
T Consensus 109 YN~~~s~i~~~A~~L~~~f~~~~~~l 134 (154)
T 4alg_A 109 YNKPTDDIVLMAQTLEKIFLQKVASM 134 (154)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHTTS
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 87999999999999999999999978
No 3
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=1.00 E-value=1 Score=204.50 Aligned_cols=106 Identities=42% Similarity=0.731 Sum_probs=100.4
Q ss_pred CCHHHHHHHHHHHHHHHCCCC---CCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
Q ss_conf 839999999999999990899---87777885623358886121115999978999997229999999999999763210
Q 005609 175 GNVILMKQCETLLKRLMSHQY---GWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSN 251 (688)
Q Consensus 175 ~~~~~~k~c~~IL~~L~~~~~---a~~F~~PVDp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~N 251 (688)
.....++.|..||..|+.++. +|+|..|||+..+++||||+||++||||+||++||.++.|.++.+|.+||+|||.|
T Consensus 19 ~~~~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~N 98 (130)
T 2ouo_A 19 KVSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSN 98 (130)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 56999999999999999677635578753789903236985898818988899999999868999899999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 12249999989999999999999999999
Q 005609 252 AMTYNPPGNDFHIMADTLRKFFEARWKAI 280 (688)
Q Consensus 252 A~~YN~~~s~V~~~A~~L~~~Fe~~~k~i 280 (688)
|++||++++.||.+|..|+.+|+..|+.+
T Consensus 99 a~~yN~~~s~i~~~A~~L~~~f~~~~~~l 127 (130)
T 2ouo_A 99 CYKYNPPDHEVVAMARKLQDVFEMRFAKM 127 (130)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 99986999999999999999999999877
No 4
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=1.00 E-value=1 Score=203.64 Aligned_cols=105 Identities=42% Similarity=0.768 Sum_probs=100.0
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 39999999999999990899877778856233588861211159999789999972299999999999997632101224
Q 005609 176 NVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTY 255 (688)
Q Consensus 176 ~~~~~k~c~~IL~~L~~~~~a~~F~~PVDp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~Y 255 (688)
..++...|..||..|++|+.+|+|..|||+.++++||||+||++||||+||++||.++.|.++.+|.+||+|||.||++|
T Consensus 19 ~~~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 98 (127)
T 2oss_A 19 TNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIY 98 (127)
T ss_dssp CHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999994955464448998232358648988279999999999998699999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999989999999999999999999
Q 005609 256 NPPGNDFHIMADTLRKFFEARWKAI 280 (688)
Q Consensus 256 N~~~s~V~~~A~~L~~~Fe~~~k~i 280 (688)
|+++|.||.+|..|+++|++.|+.+
T Consensus 99 N~~~s~i~~~A~~L~~~f~~~~~~l 123 (127)
T 2oss_A 99 NKPGDDIVLMAEALEKLFLQKINEL 123 (127)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 7999999999999999999999977
No 5
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=1.00 E-value=1 Score=197.79 Aligned_cols=105 Identities=43% Similarity=0.743 Sum_probs=100.3
Q ss_pred CHHHHHHHHHHHHHHHCCCC---CCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 39999999999999990899---877778856233588861211159999789999972299999999999997632101
Q 005609 176 NVILMKQCETLLKRLMSHQY---GWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNA 252 (688)
Q Consensus 176 ~~~~~k~c~~IL~~L~~~~~---a~~F~~PVDp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA 252 (688)
...+++.|..||..|+.++. +|+|..|||+..+++||||++|++||||+||++||.++.|.++.+|..||+|||.||
T Consensus 7 ~~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na 86 (120)
T 3jvl_A 7 ISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNC 86 (120)
T ss_dssp SCHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCHHCCCCCHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 29999999999999986767652536318999031489988998589999999999982699989999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2249999989999999999999999999
Q 005609 253 MTYNPPGNDFHIMADTLRKFFEARWKAI 280 (688)
Q Consensus 253 ~~YN~~~s~V~~~A~~L~~~Fe~~~k~i 280 (688)
++||+++|.||.+|..|+.+|++.|+.+
T Consensus 87 ~~yN~~~s~~~~~A~~L~~~f~~~~~~~ 114 (120)
T 3jvl_A 87 YKYNPPDHEVVAMARKLQDVFEMRFAKM 114 (120)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 9987999999999999999999999877
No 6
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=1.00 E-value=1 Score=197.10 Aligned_cols=106 Identities=37% Similarity=0.638 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999999908998777788562335888612111599997899999722999999999999976321012249
Q 005609 177 VILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYN 256 (688)
Q Consensus 177 ~~~~k~c~~IL~~L~~~~~a~~F~~PVDp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN 256 (688)
..|.+.|..||..|+.++.+|+|..|||+. .+||||++|++||||+||++||.++.|.++.+|..||+|||.||++||
T Consensus 20 ~~l~~~~~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 97 (135)
T 3mb3_A 20 QAWKKQCEELLNLIFQCEDSEPFRQPVDLL--EYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYT 97 (135)
T ss_dssp STHHHHHHHHHHHHHHSGGGGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHCCCCCHH--HCCCHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999998298876656899923--279889993798589999999817999999999999999999999978
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99-99899999999999999999999638
Q 005609 257 PP-GNDFHIMADTLRKFFEARWKAIEKKL 284 (688)
Q Consensus 257 ~~-~s~V~~~A~~L~~~Fe~~~k~ie~~~ 284 (688)
++ ++.||.+|..|+.+|++.|..+...+
T Consensus 98 ~~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 126 (135)
T 3mb3_A 98 PSKRSRIYSMSLRLSAFFEEHISSVLSDY 126 (135)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89898999999999999999999999989
No 7
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=1.00 E-value=1 Score=196.31 Aligned_cols=103 Identities=36% Similarity=0.681 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999999999999089987777885623358886121115999978999997229999999999999763210122499
Q 005609 178 ILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNP 257 (688)
Q Consensus 178 ~~~k~c~~IL~~L~~~~~a~~F~~PVDp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~ 257 (688)
..++.|..||..|+.|+.+|+|..|||+. .+||||++|++||||+||++||.++.|.++.+|..||+|||.||++||+
T Consensus 13 ~~~~~c~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 90 (117)
T 3g0l_A 13 KDLALCSMILTEMETHEDAWPFLLPVNLK--LVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNE 90 (117)
T ss_dssp THHHHHHHHHHHHHTSTTCGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHCCCCHHHCCCCCHH--HCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999998498966652859865--5588287858999999999998079997999999999999999999879
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998999999999999999999996
Q 005609 258 PGNDFHIMADTLRKFFEARWKAIEK 282 (688)
Q Consensus 258 ~~s~V~~~A~~L~~~Fe~~~k~ie~ 282 (688)
++|.+|.+|..|+.+|++.|+.+..
T Consensus 91 ~~s~~~~~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 91 DDSDIGRAGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999999999883
No 8
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=1.00 E-value=1 Score=195.83 Aligned_cols=110 Identities=30% Similarity=0.492 Sum_probs=103.5
Q ss_pred CCCHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 8839999999999999990-899877778856233588861211159999789999972299999999999997632101
Q 005609 174 TGNVILMKQCETLLKRLMS-HQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNA 252 (688)
Q Consensus 174 ~~~~~~~k~c~~IL~~L~~-~~~a~~F~~PVDp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA 252 (688)
....++.+.|..+|..|+. ++.+|+|..|||+..+++||||++|++||||+||++||.++.|.++.+|..||+|||.||
T Consensus 7 ~~~~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na 86 (119)
T 3p1f_A 7 FKPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNA 86 (119)
T ss_dssp CCHHHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCHHCCCCCHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 89999999999999999981988734228899410359978899659998999999982699989999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2249999989999999999999999999963
Q 005609 253 MTYNPPGNDFHIMADTLRKFFEARWKAIEKK 283 (688)
Q Consensus 253 ~~YN~~~s~V~~~A~~L~~~Fe~~~k~ie~~ 283 (688)
++||+++|.+|.+|..|+.+|++.|..+...
T Consensus 87 ~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~ 117 (119)
T 3p1f_A 87 WLYNRKTSRVYKFCSKLAEVFEQEIDPVMQS 117 (119)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9987999999999999999999999999875
No 9
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=195.48 Aligned_cols=106 Identities=28% Similarity=0.402 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999999908998777788562335888612111599997899999722999999999999976321012249
Q 005609 177 VILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYN 256 (688)
Q Consensus 177 ~~~~k~c~~IL~~L~~~~~a~~F~~PVDp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN 256 (688)
.++...|..||..|++++.+|+|..|||+. .+||||++|++||||+||++||.++.|.++.+|.+||+|||.||++||
T Consensus 6 ~pl~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 83 (121)
T 2d9e_A 6 SGFLILLRKTLEQLQEKDTGNIFSEPVPLS--EVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYN 83 (121)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCSSSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHCCCCCHHHCCCCCCC--CCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 589999999999998298548657969700--068889883898679999999866999999999999999999999987
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999899999999999999999999638
Q 005609 257 PPGNDFHIMADTLRKFFEARWKAIEKKL 284 (688)
Q Consensus 257 ~~~s~V~~~A~~L~~~Fe~~~k~ie~~~ 284 (688)
+++|.+|.+|..|++.|+..|..+.+.+
T Consensus 84 ~~~s~~~~~A~~L~~~~~~~l~~~~~~~ 111 (121)
T 2d9e_A 84 AKDTIFYRAAVRLREQGGAVLRQARRQA 111 (121)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999
No 10
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=1.00 E-value=1 Score=195.46 Aligned_cols=108 Identities=39% Similarity=0.668 Sum_probs=102.0
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 39999999999999990899877778856233588861211159999789999972299999999999997632101224
Q 005609 176 NVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTY 255 (688)
Q Consensus 176 ~~~~~k~c~~IL~~L~~~~~a~~F~~PVDp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~Y 255 (688)
...|.+.|..||..|++++.+|+|..|||+. .+||||.+|++||||+||++||.++.|.++.+|..||+|||.||++|
T Consensus 8 ~~~~~~~c~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 85 (123)
T 3q2e_A 8 ESNWKKQCKELVNLIFQCEDSEPFRQPVDLV--EYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAY 85 (123)
T ss_dssp --CHHHHHHHHHHHHHTSGGGGGGSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHCCCCCHH--HCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999998198757556899812--16788988189998999999984699999999999999999999998
Q ss_pred CCC-CCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999-998999999999999999999996389
Q 005609 256 NPP-GNDFHIMADTLRKFFEARWKAIEKKLP 285 (688)
Q Consensus 256 N~~-~s~V~~~A~~L~~~Fe~~~k~ie~~~p 285 (688)
|++ ++.||.+|..|+.+|++.|+.+...+-
T Consensus 86 N~~~~s~i~~~A~~L~~~f~~~~~~~~~~~~ 116 (123)
T 3q2e_A 86 TPNKRSKIYSMTLRLSALFEEKMKKISSDFK 116 (123)
T ss_dssp SCCTTSHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8899989999999999999999999889899
Done!