BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005610
(688 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZYR|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Magnesium
pdb|2ZYR|B Chain B, A. Fulgidus Lipase With Fatty Acid Fragment And Magnesium
Length = 484
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 202 WAVLIEN---LAKIGYE-GKNLYM----ASYDWRLSFQNTEIRDQALSRLKSKIELLCVT 253
WA+++E + +G E G N+ + D LS + D+ SRL I+
Sbjct: 65 WALVVETDMLFSGLGSEFGLNISQIIDPETLDKILSKSRERLIDETFSRLDRVIDEALAE 124
Query: 254 NGYKKVVVVPHSMGVIYFLHFLK 276
+G KV +V HSMG + + ++
Sbjct: 125 SGADKVDLVGHSMGTFFLVRYVN 147
>pdb|2ZYS|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Chloride
Length = 479
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 202 WAVLIEN---LAKIGYE-GKNLYM----ASYDWRLSFQNTEIRDQALSRLKSKIELLCVT 253
WA+++E + +G E G N+ + D LS + D+ SRL I+
Sbjct: 65 WALVVETDMLFSGLGSEFGLNISQIIDPETLDKILSKSRERLIDETFSRLDRVIDEALAE 124
Query: 254 NGYKKVVVVPHSMGVIYFLHFLK 276
+G KV +V HSMG + + ++
Sbjct: 125 SGADKVDLVGHSMGTFFLVRYVN 147
>pdb|2ZYI|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Calcium
pdb|2ZYI|B Chain B, A. Fulgidus Lipase With Fatty Acid Fragment And Calcium
Length = 475
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 202 WAVLIEN---LAKIGYE-GKNLYM----ASYDWRLSFQNTEIRDQALSRLKSKIELLCVT 253
WA+++E + +G E G N+ + D LS + D+ SRL I+
Sbjct: 65 WALVVETDMLFSGLGSEFGLNISQIIDPETLDKILSKSRERLIDETFSRLDRVIDEALAE 124
Query: 254 NGYKKVVVVPHSMGVIYFLHFLK 276
+G KV +V HSMG + + ++
Sbjct: 125 SGADKVDLVGHSMGTFFLVRYVN 147
>pdb|2ZYH|A Chain A, Mutant A. Fulgidus Lipase S136a Complexed With Fatty Acid
Fragment
pdb|2ZYH|B Chain B, Mutant A. Fulgidus Lipase S136a Complexed With Fatty Acid
Fragment
Length = 475
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 202 WAVLIEN---LAKIGYE-GKNLYM----ASYDWRLSFQNTEIRDQALSRLKSKIELLCVT 253
WA+++E + +G E G N+ + D LS + D+ SRL I+
Sbjct: 65 WALVVETDMLFSGLGSEFGLNISQIIDPETLDKILSKSRERLIDETFSRLDRVIDEALAE 124
Query: 254 NGYKKVVVVPHSMGVIYFLHFLK 276
+G KV +V H+MG + + ++
Sbjct: 125 SGADKVDLVGHAMGTFFLVRYVN 147
>pdb|1FVU|B Chain B, Crystal Structure Of Botrocetin
pdb|1FVU|D Chain D, Crystal Structure Of Botrocetin
pdb|1IJK|C Chain C, The Von Willebrand Factor Mutant (I546v) A1 Domain-
Botrocetin Complex
pdb|1U0N|C Chain C, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
pdb|1U0O|B Chain B, The Mouse Von Willebrand Factor A1-Botrocetin Complex
Length = 125
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 44/112 (39%), Gaps = 19/112 (16%)
Query: 375 DWSPEEGHACQLVKKGNFQCSPNDNYTDAMRGFQIKETEKYGRIISF-GKEESQLPSSQI 433
DWS EGH + K+ + T+ G ++SF KEE+ S
Sbjct: 5 DWSSYEGHCYRFFKEWMHWDDAEEFCTEQQTG---------AHLVSFQSKEEADFVRSL- 54
Query: 434 PILNSKELLHGSAT----ETVNSSCRGVWTEYDEMDRESFRKIAENKVYTSK 481
+ E+L G V + CR WT+ E D + + IAE + SK
Sbjct: 55 ----TSEMLKGDVVWIGLSDVWNKCRFEWTDGMEFDYDDYYLIAEYECVASK 102
>pdb|2ZD2|A Chain A, D202k Mutant Of P. Denitrificans Atp12p
pdb|2ZD2|B Chain B, D202k Mutant Of P. Denitrificans Atp12p
Length = 234
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 12/57 (21%)
Query: 102 VPESPGVRLKRD---------GLTALHPVVLVPGIVTGGLELWEGR---PCSEGLFR 146
VP+ P V LK GLTALH +V +PG + GL + GR P + L R
Sbjct: 140 VPQDPVVLLKLRAEVASLDPFGLTALHDLVTLPGSLILGLAVIRGRIDAPTAHALSR 196
>pdb|2P4X|A Chain A, Crystal Structure Of Atp12 From Paracoccus Denitrificans
pdb|2P4X|B Chain B, Crystal Structure Of Atp12 From Paracoccus Denitrificans
pdb|2R31|A Chain A, Crystal Structure Of Atp12p From Paracoccus Denitrificans
Length = 239
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 12/57 (21%)
Query: 102 VPESPGVRLKRD---------GLTALHPVVLVPGIVTGGLELWEGR---PCSEGLFR 146
VP+ P V LK GLTALH +V +PG + GL + GR P + L R
Sbjct: 144 VPQDPVVLLKLRAEVASLDPFGLTALHDLVTLPGSLILGLAVIRGRIDAPTAHALSR 200
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,997,412
Number of Sequences: 62578
Number of extensions: 909796
Number of successful extensions: 2290
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2282
Number of HSP's gapped (non-prelim): 11
length of query: 688
length of database: 14,973,337
effective HSP length: 105
effective length of query: 583
effective length of database: 8,402,647
effective search space: 4898743201
effective search space used: 4898743201
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)