Query 005611
Match_columns 688
No_of_seqs 562 out of 3852
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 02:09:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005611.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005611hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0734 AAA+-type ATPase conta 100.0 4.6E-94 1E-98 759.0 40.2 438 167-646 296-735 (752)
2 COG0465 HflB ATP-dependent Zn 100.0 2.9E-88 6.4E-93 748.8 44.6 460 154-649 129-594 (596)
3 KOG0731 AAA+-type ATPase conta 100.0 6.1E-87 1.3E-91 748.2 42.0 461 167-662 303-765 (774)
4 CHL00176 ftsH cell division pr 100.0 2.9E-79 6.4E-84 697.2 48.3 459 156-647 164-627 (638)
5 PRK10733 hflB ATP-dependent me 100.0 2E-76 4.3E-81 681.6 49.8 446 167-647 144-597 (644)
6 TIGR01241 FtsH_fam ATP-depende 100.0 8.1E-76 1.8E-80 661.9 49.1 459 155-644 35-495 (495)
7 COG1222 RPT1 ATP-dependent 26S 100.0 1.2E-54 2.5E-59 444.9 25.7 254 166-427 142-396 (406)
8 CHL00206 ycf2 Ycf2; Provisiona 100.0 2.9E-50 6.4E-55 478.0 27.8 307 201-549 1623-1984(2281)
9 KOG0730 AAA+-type ATPase [Post 100.0 2.4E-47 5.1E-52 416.8 24.1 251 165-426 424-677 (693)
10 KOG0733 Nuclear AAA ATPase (VC 100.0 1.4E-45 3.1E-50 396.7 25.7 249 167-426 503-772 (802)
11 KOG0727 26S proteasome regulat 100.0 8.9E-43 1.9E-47 340.3 22.7 252 166-425 146-398 (408)
12 KOG0733 Nuclear AAA ATPase (VC 100.0 4.3E-43 9.3E-48 377.6 21.5 228 168-406 183-414 (802)
13 KOG0728 26S proteasome regulat 100.0 1.4E-42 2.9E-47 338.7 21.1 252 167-426 139-391 (404)
14 KOG0652 26S proteasome regulat 100.0 1.6E-42 3.4E-47 339.9 19.2 252 166-425 162-414 (424)
15 KOG0729 26S proteasome regulat 100.0 7.7E-42 1.7E-46 336.0 18.1 256 166-429 168-424 (435)
16 KOG0726 26S proteasome regulat 100.0 4.4E-42 9.6E-47 341.5 15.5 253 167-427 177-430 (440)
17 COG1223 Predicted ATPase (AAA+ 100.0 7E-41 1.5E-45 328.7 21.0 241 167-422 113-354 (368)
18 KOG0736 Peroxisome assembly fa 100.0 8E-41 1.7E-45 368.2 23.1 248 167-426 664-935 (953)
19 PTZ00454 26S protease regulato 100.0 1.7E-39 3.6E-44 353.7 27.5 252 167-426 137-389 (398)
20 KOG0738 AAA+-type ATPase [Post 100.0 2.7E-39 5.9E-44 333.2 20.8 246 167-425 204-471 (491)
21 PF01434 Peptidase_M41: Peptid 100.0 1.3E-39 2.8E-44 327.1 15.1 208 412-642 1-213 (213)
22 PRK03992 proteasome-activating 100.0 7.6E-38 1.7E-42 342.1 27.1 255 167-429 123-378 (389)
23 PTZ00361 26 proteosome regulat 100.0 8.7E-38 1.9E-42 342.1 24.5 252 167-426 175-427 (438)
24 KOG0735 AAA+-type ATPase [Post 100.0 8.3E-38 1.8E-42 341.3 21.8 227 169-406 661-888 (952)
25 TIGR01243 CDC48 AAA family ATP 100.0 4.1E-36 8.8E-41 353.9 25.9 249 168-426 446-713 (733)
26 COG0464 SpoVK ATPases of the A 100.0 5.4E-36 1.2E-40 338.9 24.8 247 167-424 234-484 (494)
27 TIGR01242 26Sp45 26S proteasom 100.0 2.6E-35 5.6E-40 320.6 26.8 249 167-423 114-363 (364)
28 CHL00195 ycf46 Ycf46; Provisio 100.0 2E-35 4.3E-40 328.1 24.9 242 169-425 222-465 (489)
29 KOG0737 AAA+-type ATPase [Post 100.0 6.8E-36 1.5E-40 308.8 19.0 229 165-406 82-314 (386)
30 KOG0739 AAA+-type ATPase [Post 100.0 1.3E-36 2.9E-41 303.4 12.6 230 164-407 122-354 (439)
31 KOG0651 26S proteasome regulat 100.0 1.8E-36 3.8E-41 304.8 13.3 251 167-425 124-375 (388)
32 TIGR03689 pup_AAA proteasome A 100.0 8.7E-33 1.9E-37 306.5 24.2 254 166-429 173-484 (512)
33 KOG0730 AAA+-type ATPase [Post 100.0 3.1E-31 6.8E-36 290.6 20.8 241 170-429 180-422 (693)
34 KOG0741 AAA+-type ATPase [Post 100.0 1.7E-31 3.8E-36 283.8 15.8 249 168-425 212-492 (744)
35 PLN00020 ribulose bisphosphate 100.0 2.9E-30 6.2E-35 269.9 23.4 263 171-455 111-395 (413)
36 TIGR01243 CDC48 AAA family ATP 100.0 6.7E-30 1.4E-34 301.3 24.7 247 169-426 172-438 (733)
37 KOG0732 AAA+-type ATPase conta 100.0 1.8E-30 4E-35 299.6 19.1 251 168-429 258-531 (1080)
38 KOG0740 AAA+-type ATPase [Post 100.0 7.3E-29 1.6E-33 265.8 15.0 245 167-425 145-406 (428)
39 KOG0742 AAA+-type ATPase [Post 99.9 5.2E-20 1.1E-24 191.5 21.9 233 170-421 350-610 (630)
40 CHL00181 cbbX CbbX; Provisiona 99.8 5.1E-20 1.1E-24 193.3 19.1 212 174-405 22-256 (287)
41 KOG0058 Peptide exporter, ABC 99.8 2.3E-20 5E-25 208.6 16.4 195 100-326 393-660 (716)
42 TIGR02881 spore_V_K stage V sp 99.8 1.3E-19 2.8E-24 188.5 20.5 212 173-405 4-240 (261)
43 TIGR02880 cbbX_cfxQ probable R 99.8 9.9E-20 2.2E-24 191.2 17.4 209 176-405 23-255 (284)
44 PF00004 AAA: ATPase family as 99.8 1.1E-19 2.4E-24 168.0 12.8 130 211-352 1-132 (132)
45 KOG0743 AAA+-type ATPase [Post 99.8 2.6E-19 5.7E-24 190.9 15.3 212 171-396 197-413 (457)
46 KOG0744 AAA+-type ATPase [Post 99.8 2.3E-18 5.1E-23 175.1 14.2 238 174-422 141-413 (423)
47 PF05496 RuvB_N: Holliday junc 99.8 7.7E-18 1.7E-22 166.6 16.5 192 171-402 20-228 (233)
48 KOG0736 Peroxisome assembly fa 99.8 8.9E-18 1.9E-22 186.8 18.4 206 205-424 428-654 (953)
49 PRK00080 ruvB Holliday junctio 99.8 2.1E-17 4.6E-22 177.7 20.2 217 171-424 21-251 (328)
50 COG2274 SunT ABC-type bacterio 99.8 3.7E-18 8.1E-23 197.6 14.8 174 99-283 397-643 (709)
51 TIGR00635 ruvB Holliday juncti 99.8 2.1E-17 4.6E-22 175.8 19.4 214 173-423 2-229 (305)
52 KOG0735 AAA+-type ATPase [Post 99.7 2.8E-17 6.1E-22 181.3 18.6 241 207-455 430-683 (952)
53 COG2255 RuvB Holliday junction 99.7 1.5E-16 3.1E-21 160.2 18.3 217 171-427 22-255 (332)
54 COG0464 SpoVK ATPases of the A 99.7 8.2E-16 1.8E-20 174.4 22.3 219 194-425 4-228 (494)
55 TIGR02639 ClpA ATP-dependent C 99.7 1.7E-16 3.7E-21 187.3 16.5 224 171-426 178-432 (731)
56 TIGR00763 lon ATP-dependent pr 99.7 2.6E-16 5.6E-21 186.7 16.2 163 176-366 321-505 (775)
57 PRK11034 clpA ATP-dependent Cl 99.7 4.6E-16 1E-20 181.7 17.3 224 172-427 183-437 (758)
58 KOG0056 Heavy metal exporter H 99.7 6.6E-17 1.4E-21 171.8 7.8 194 101-326 465-730 (790)
59 TIGR02868 CydC thiol reductant 99.7 5.8E-16 1.3E-20 177.3 15.2 172 100-282 259-503 (529)
60 COG2256 MGS1 ATPase related to 99.7 1.1E-15 2.3E-20 160.9 14.9 205 170-425 19-240 (436)
61 TIGR00362 DnaA chromosomal rep 99.6 7.8E-15 1.7E-19 162.3 21.0 241 169-455 104-358 (405)
62 COG0466 Lon ATP-dependent Lon 99.6 1.4E-15 2.9E-20 169.7 14.5 235 175-424 323-585 (782)
63 TIGR02902 spore_lonB ATP-depen 99.6 2.7E-15 5.8E-20 170.5 17.4 217 167-425 57-334 (531)
64 PRK14956 DNA polymerase III su 99.6 5.8E-15 1.3E-19 162.4 19.0 203 169-420 12-243 (484)
65 PRK00149 dnaA chromosomal repl 99.6 6E-15 1.3E-19 165.3 19.4 221 169-424 116-350 (450)
66 TIGR02928 orc1/cdc6 family rep 99.6 2.5E-14 5.3E-19 156.1 23.3 223 171-423 11-274 (365)
67 PRK12323 DNA polymerase III su 99.6 3.1E-15 6.8E-20 168.2 16.4 201 170-419 11-245 (700)
68 PRK14962 DNA polymerase III su 99.6 7.6E-15 1.6E-19 163.8 18.7 204 170-422 9-241 (472)
69 PRK07003 DNA polymerase III su 99.6 8.1E-15 1.7E-19 166.8 18.3 201 170-419 11-240 (830)
70 PRK14961 DNA polymerase III su 99.6 1.8E-14 4E-19 156.8 19.7 203 170-421 11-242 (363)
71 KOG0055 Multidrug/pheromone ex 99.6 5E-15 1.1E-19 175.0 15.5 261 16-326 777-1182(1228)
72 COG5265 ATM1 ABC-type transpor 99.6 1.7E-14 3.7E-19 152.2 17.0 271 24-326 57-455 (497)
73 PRK06893 DNA replication initi 99.6 4.4E-14 9.5E-19 144.1 19.5 212 168-420 9-227 (229)
74 PRK06645 DNA polymerase III su 99.6 2.7E-14 5.9E-19 160.0 19.4 215 168-422 14-255 (507)
75 PRK14960 DNA polymerase III su 99.6 2.2E-14 4.8E-19 161.8 18.4 203 170-421 10-241 (702)
76 TIGR01193 bacteriocin_ABC ABC- 99.6 5.4E-15 1.2E-19 175.0 14.0 121 99-230 399-522 (708)
77 PRK04195 replication factor C 99.6 2.9E-14 6.2E-19 161.0 19.1 209 167-420 6-222 (482)
78 TIGR03796 NHPM_micro_ABC1 NHPM 99.6 6.7E-15 1.5E-19 174.3 14.7 172 100-282 398-648 (710)
79 PRK14088 dnaA chromosomal repl 99.6 2.6E-14 5.6E-19 159.0 18.4 224 168-424 98-333 (440)
80 PRK14958 DNA polymerase III su 99.6 2.5E-14 5.4E-19 161.3 18.3 203 170-421 11-242 (509)
81 PRK11176 lipid transporter ATP 99.6 7.3E-15 1.6E-19 170.2 14.3 172 100-282 270-513 (582)
82 PRK13342 recombination factor 99.6 4.2E-14 9E-19 156.7 19.5 200 171-424 8-220 (413)
83 TIGR03375 type_I_sec_LssB type 99.6 5.7E-15 1.2E-19 174.4 13.4 121 100-231 390-514 (694)
84 PRK00411 cdc6 cell division co 99.6 1.3E-13 2.8E-18 152.0 23.3 225 170-424 25-283 (394)
85 KOG2004 Mitochondrial ATP-depe 99.6 8.1E-15 1.8E-19 162.4 13.5 176 175-367 411-597 (906)
86 COG1132 MdlB ABC-type multidru 99.6 1.9E-15 4E-20 174.5 8.9 199 60-284 232-500 (567)
87 PRK07994 DNA polymerase III su 99.6 4E-14 8.7E-19 161.8 19.0 203 170-421 11-242 (647)
88 TIGR03797 NHPM_micro_ABC2 NHPM 99.6 1.3E-14 2.8E-19 171.1 14.5 172 100-282 380-621 (686)
89 PRK08691 DNA polymerase III su 99.6 4.7E-14 1E-18 160.6 18.2 209 170-421 11-242 (709)
90 PRK14086 dnaA chromosomal repl 99.6 6.1E-14 1.3E-18 158.3 18.5 191 209-425 315-517 (617)
91 TIGR03345 VI_ClpV1 type VI sec 99.6 4.3E-14 9.4E-19 168.2 18.0 217 171-420 183-428 (852)
92 TIGR03420 DnaA_homol_Hda DnaA 99.6 7.3E-14 1.6E-18 141.9 17.1 205 170-420 10-225 (226)
93 PRK14949 DNA polymerase III su 99.6 9.3E-14 2E-18 161.0 19.6 206 170-418 11-239 (944)
94 PRK14964 DNA polymerase III su 99.6 8.1E-14 1.8E-18 155.0 18.3 202 170-420 8-238 (491)
95 PRK08903 DnaA regulatory inact 99.6 1.3E-13 2.8E-18 140.5 18.3 202 169-421 12-224 (227)
96 PRK14951 DNA polymerase III su 99.6 1.1E-13 2.3E-18 158.1 19.2 202 170-420 11-246 (618)
97 PRK11160 cysteine/glutathione 99.6 4.3E-14 9.4E-19 163.2 15.8 166 105-282 270-508 (574)
98 TIGR02857 CydD thiol reductant 99.6 5.6E-14 1.2E-18 161.0 16.5 171 101-282 250-491 (529)
99 PRK12402 replication factor C 99.5 2.1E-13 4.5E-18 147.0 19.1 210 168-422 8-248 (337)
100 PRK08084 DNA replication initi 99.5 3.6E-13 7.7E-18 138.0 19.6 209 168-421 15-234 (235)
101 PLN03025 replication factor C 99.5 1.7E-13 3.7E-18 146.8 17.9 202 167-419 5-219 (319)
102 TIGR02203 MsbA_lipidA lipid A 99.5 4.5E-14 9.7E-19 163.2 14.1 122 99-231 258-381 (571)
103 PRK14963 DNA polymerase III su 99.5 3.1E-13 6.8E-18 152.1 20.3 202 170-421 9-238 (504)
104 TIGR01846 type_I_sec_HlyB type 99.5 4.2E-14 9.2E-19 166.9 14.0 121 100-231 383-506 (694)
105 TIGR00958 3a01208 Conjugate Tr 99.5 6.8E-14 1.5E-18 165.3 15.6 172 100-282 406-650 (711)
106 PRK12422 chromosomal replicati 99.5 2.2E-13 4.7E-18 151.4 18.6 225 169-424 105-344 (445)
107 PRK11174 cysteine/glutathione 99.5 3.7E-14 8E-19 164.5 12.9 167 106-283 273-519 (588)
108 PRK14969 DNA polymerase III su 99.5 2.9E-13 6.2E-18 153.6 18.3 209 170-421 11-242 (527)
109 PRK05563 DNA polymerase III su 99.5 5.3E-13 1.1E-17 152.5 20.3 202 170-420 11-241 (559)
110 PRK14957 DNA polymerase III su 99.5 3.7E-13 8E-18 151.8 18.6 203 170-421 11-242 (546)
111 PRK10865 protein disaggregatio 99.5 1.5E-13 3.3E-18 164.1 16.2 166 171-369 174-357 (857)
112 PRK14959 DNA polymerase III su 99.5 3.6E-13 7.8E-18 152.8 18.1 204 169-421 10-242 (624)
113 PRK07940 DNA polymerase III su 99.5 1.9E-13 4E-18 149.4 15.1 184 173-394 3-213 (394)
114 TIGR02397 dnaX_nterm DNA polym 99.5 4.2E-13 9.1E-18 145.8 17.8 205 168-421 7-240 (355)
115 TIGR01192 chvA glucan exporter 99.5 1.4E-13 3.1E-18 159.2 14.7 122 99-231 260-384 (585)
116 PRK13341 recombination factor 99.5 3.8E-13 8.1E-18 156.8 18.2 209 170-424 23-248 (725)
117 PRK10787 DNA-binding ATP-depen 99.5 2.6E-13 5.7E-18 159.9 17.1 163 176-367 323-507 (784)
118 PRK14952 DNA polymerase III su 99.5 4E-13 8.8E-18 152.8 18.0 203 170-420 8-241 (584)
119 PRK07764 DNA polymerase III su 99.5 4E-13 8.6E-18 158.3 18.5 209 169-419 9-242 (824)
120 TIGR03346 chaperone_ClpB ATP-d 99.5 3.7E-13 7.9E-18 161.4 18.5 201 172-405 170-398 (852)
121 PRK13657 cyclic beta-1,2-gluca 99.5 1.3E-13 2.9E-18 159.8 14.2 121 99-230 260-383 (588)
122 PRK08727 hypothetical protein; 99.5 1.2E-12 2.7E-17 133.8 19.6 209 168-422 12-230 (233)
123 PRK14087 dnaA chromosomal repl 99.5 7.1E-13 1.5E-17 147.8 19.2 190 209-423 142-348 (450)
124 PTZ00112 origin recognition co 99.5 8.5E-13 1.8E-17 150.8 19.8 217 174-425 754-1008(1164)
125 PRK10790 putative multidrug tr 99.5 1.7E-13 3.7E-18 159.0 13.3 166 105-282 275-509 (592)
126 PTZ00265 multidrug resistance 99.5 2.5E-13 5.4E-18 170.3 15.1 123 100-233 1088-1219(1466)
127 PHA02544 44 clamp loader, smal 99.5 5.8E-13 1.3E-17 142.5 15.8 161 166-366 12-173 (316)
128 CHL00095 clpC Clp protease ATP 99.5 4.4E-13 9.6E-18 160.2 16.3 201 172-405 176-403 (821)
129 PRK07133 DNA polymerase III su 99.5 1.2E-12 2.6E-17 150.5 19.2 210 168-420 11-240 (725)
130 PRK10789 putative multidrug tr 99.5 7E-14 1.5E-18 161.4 8.6 140 66-231 223-364 (569)
131 PRK05896 DNA polymerase III su 99.5 1.2E-12 2.6E-17 147.8 17.6 203 169-420 10-241 (605)
132 PRK09111 DNA polymerase III su 99.5 1.6E-12 3.5E-17 148.7 18.5 210 169-421 18-255 (598)
133 PF05673 DUF815: Protein of un 99.5 1.8E-12 3.8E-17 130.4 16.5 194 166-397 18-243 (249)
134 PRK08451 DNA polymerase III su 99.5 2.4E-12 5.2E-17 144.6 19.0 203 169-420 8-239 (535)
135 PRK05342 clpX ATP-dependent pr 99.4 2E-12 4.4E-17 141.9 18.0 222 173-404 68-379 (412)
136 KOG0989 Replication factor C, 99.4 1.6E-12 3.4E-17 132.6 15.4 194 165-401 26-236 (346)
137 PRK14965 DNA polymerase III su 99.4 1.8E-12 3.9E-17 148.7 17.7 201 170-419 11-240 (576)
138 PRK14970 DNA polymerase III su 99.4 2.4E-12 5.2E-17 140.7 17.6 210 169-421 11-231 (367)
139 PF00308 Bac_DnaA: Bacterial d 99.4 1.6E-12 3.6E-17 131.5 15.1 200 170-403 3-216 (219)
140 PRK14953 DNA polymerase III su 99.4 2.4E-12 5.1E-17 144.5 17.7 209 170-421 11-242 (486)
141 PRK14955 DNA polymerase III su 99.4 2E-12 4.4E-17 142.5 16.9 214 169-421 10-255 (397)
142 PRK13407 bchI magnesium chelat 99.4 6E-13 1.3E-17 142.0 12.1 214 170-424 3-307 (334)
143 KOG0057 Mitochondrial Fe/S clu 99.4 3.7E-13 7.9E-18 146.6 10.5 213 101-354 281-562 (591)
144 COG0593 DnaA ATPase involved i 99.4 4.8E-12 1.1E-16 136.8 19.0 243 167-455 79-333 (408)
145 KOG2028 ATPase related to the 99.4 2.1E-12 4.5E-17 133.7 15.2 208 170-424 133-369 (554)
146 COG1474 CDC6 Cdc6-related prot 99.4 6.7E-12 1.5E-16 135.9 20.1 217 176-424 18-266 (366)
147 PRK05642 DNA replication initi 99.4 8.7E-12 1.9E-16 127.6 19.5 180 208-421 45-233 (234)
148 PRK06620 hypothetical protein; 99.4 3.3E-12 7.1E-17 128.8 16.0 196 168-420 9-213 (214)
149 PRK06305 DNA polymerase III su 99.4 5E-12 1.1E-16 141.0 18.7 203 170-421 12-244 (451)
150 PRK06647 DNA polymerase III su 99.4 4E-12 8.8E-17 144.8 17.8 202 170-420 11-241 (563)
151 TIGR02640 gas_vesic_GvpN gas v 99.4 6.8E-12 1.5E-16 130.6 17.8 189 208-425 21-259 (262)
152 PRK00440 rfc replication facto 99.4 6.9E-12 1.5E-16 134.0 18.3 205 166-421 8-224 (319)
153 TIGR02204 MsbA_rel ABC transpo 99.4 1.9E-12 4.2E-17 149.8 14.2 122 100-232 263-390 (576)
154 CHL00081 chlI Mg-protoporyphyr 99.4 2.6E-12 5.7E-17 137.4 13.5 221 169-426 11-325 (350)
155 PRK14954 DNA polymerase III su 99.4 9.7E-12 2.1E-16 142.6 18.5 213 170-421 11-255 (620)
156 TIGR00390 hslU ATP-dependent p 99.4 1.1E-11 2.3E-16 133.8 17.3 86 176-261 13-102 (441)
157 TIGR00382 clpX endopeptidase C 99.4 8.7E-12 1.9E-16 136.3 16.8 223 173-405 74-386 (413)
158 TIGR01842 type_I_sec_PrtD type 99.4 6.1E-13 1.3E-17 152.9 8.1 139 67-232 228-368 (544)
159 COG4618 ArpD ABC-type protease 99.4 2.8E-13 6.1E-18 146.1 4.8 241 70-367 249-564 (580)
160 COG2812 DnaX DNA polymerase II 99.4 8.3E-12 1.8E-16 138.7 16.5 207 170-419 11-240 (515)
161 PRK14948 DNA polymerase III su 99.4 1.5E-11 3.3E-16 141.6 19.3 206 170-419 11-241 (620)
162 KOG0055 Multidrug/pheromone ex 99.4 1.2E-12 2.6E-17 155.1 9.9 159 136-326 312-545 (1228)
163 TIGR02030 BchI-ChlI magnesium 99.4 5.7E-12 1.2E-16 134.9 14.1 215 173-426 2-312 (337)
164 PRK05201 hslU ATP-dependent pr 99.4 1.2E-11 2.6E-16 133.6 16.4 175 177-363 17-345 (443)
165 PRK11034 clpA ATP-dependent Cl 99.4 1.9E-11 4.1E-16 143.3 19.3 165 177-368 460-668 (758)
166 TIGR02903 spore_lon_C ATP-depe 99.4 3.3E-11 7.1E-16 139.3 21.0 218 171-424 150-431 (615)
167 PRK14950 DNA polymerase III su 99.4 1.7E-11 3.6E-16 141.4 18.0 210 169-421 10-243 (585)
168 TIGR02639 ClpA ATP-dependent C 99.3 3.1E-11 6.7E-16 142.9 19.1 201 176-403 455-711 (731)
169 PRK09087 hypothetical protein; 99.3 1.4E-11 3E-16 125.3 13.4 172 209-423 45-222 (226)
170 PTZ00265 multidrug resistance 99.3 8.2E-12 1.8E-16 156.8 13.3 112 108-230 318-433 (1466)
171 TIGR00957 MRP_assoc_pro multi 99.3 1.2E-11 2.7E-16 156.6 14.9 114 106-230 1214-1334(1522)
172 TIGR01650 PD_CobS cobaltochela 99.3 6.4E-12 1.4E-16 132.4 9.9 204 207-450 63-313 (327)
173 COG1224 TIP49 DNA helicase TIP 99.3 1E-10 2.2E-15 121.4 18.2 100 322-424 321-433 (450)
174 cd00009 AAA The AAA+ (ATPases 99.3 3.4E-11 7.3E-16 111.9 13.6 124 207-351 18-150 (151)
175 PRK14971 DNA polymerase III su 99.3 1.2E-10 2.5E-15 134.4 19.6 203 170-421 12-244 (614)
176 TIGR00368 Mg chelatase-related 99.3 6.6E-11 1.4E-15 133.0 16.7 213 171-421 188-497 (499)
177 COG3829 RocR Transcriptional r 99.3 5.6E-11 1.2E-15 130.2 14.0 250 170-459 240-532 (560)
178 TIGR02442 Cob-chelat-sub cobal 99.2 5.2E-11 1.1E-15 138.5 14.2 214 173-425 2-306 (633)
179 PRK09112 DNA polymerase III su 99.2 1.6E-10 3.5E-15 124.7 16.8 191 169-399 17-244 (351)
180 COG4988 CydD ABC-type transpor 99.2 3.7E-11 8E-16 132.9 11.9 205 52-282 212-489 (559)
181 TIGR01194 cyc_pep_trnsptr cycl 99.2 1.2E-11 2.7E-16 142.3 7.8 165 107-282 263-503 (555)
182 TIGR03015 pepcterm_ATPase puta 99.2 3E-10 6.4E-15 118.5 17.5 191 209-424 44-267 (269)
183 COG3604 FhlA Transcriptional r 99.2 4.9E-10 1.1E-14 121.3 18.4 201 170-403 218-456 (550)
184 PLN03232 ABC transporter C fam 99.2 6.3E-11 1.4E-15 150.0 13.6 171 101-282 544-773 (1495)
185 PRK13531 regulatory ATPase Rav 99.2 3.2E-10 6.9E-15 124.9 17.3 211 177-426 22-286 (498)
186 PF05621 TniB: Bacterial TniB 99.2 8.1E-10 1.8E-14 114.6 18.9 214 177-419 36-285 (302)
187 PLN03130 ABC transporter C fam 99.2 1.6E-10 3.4E-15 146.7 15.3 171 101-282 544-773 (1622)
188 PTZ00243 ABC transporter; Prov 99.2 1.7E-10 3.6E-15 146.2 15.4 114 106-230 1211-1358(1560)
189 PHA02244 ATPase-like protein 99.2 8.5E-10 1.8E-14 117.7 18.2 125 208-355 119-263 (383)
190 COG2607 Predicted ATPase (AAA+ 99.2 1.5E-09 3.3E-14 107.5 18.1 194 166-397 51-275 (287)
191 PRK09862 putative ATP-dependen 99.2 5.9E-10 1.3E-14 124.8 16.9 209 172-421 188-490 (506)
192 COG0542 clpA ATP-binding subun 99.2 1.6E-10 3.6E-15 133.0 12.7 159 175-367 491-706 (786)
193 TIGR03345 VI_ClpV1 type VI sec 99.2 7.2E-10 1.6E-14 132.4 18.6 198 175-403 566-830 (852)
194 smart00350 MCM minichromosome 99.2 3.3E-10 7.1E-15 128.7 14.8 191 206-423 234-504 (509)
195 PRK07471 DNA polymerase III su 99.1 6.8E-10 1.5E-14 120.5 16.2 187 169-397 13-240 (365)
196 PRK10865 protein disaggregatio 99.1 1.1E-09 2.4E-14 131.3 19.3 168 174-368 567-781 (857)
197 PRK05564 DNA polymerase III su 99.1 5.7E-10 1.2E-14 119.3 15.2 169 173-386 2-182 (313)
198 COG0714 MoxR-like ATPases [Gen 99.1 6.9E-10 1.5E-14 119.5 15.8 134 207-364 42-201 (329)
199 COG4987 CydC ABC-type transpor 99.1 6.2E-10 1.3E-14 121.7 14.9 100 171-281 336-506 (573)
200 TIGR03346 chaperone_ClpB ATP-d 99.1 1.9E-09 4.2E-14 129.6 19.7 203 175-404 565-826 (852)
201 KOG1969 DNA replication checkp 99.1 2.5E-09 5.4E-14 119.9 18.4 215 164-406 260-518 (877)
202 smart00382 AAA ATPases associa 99.1 3.6E-10 7.9E-15 103.9 9.7 128 208-353 2-147 (148)
203 COG2204 AtoC Response regulato 99.1 3.9E-10 8.4E-15 123.8 11.3 209 171-418 137-386 (464)
204 PRK15424 propionate catabolism 99.1 3.2E-10 7E-15 128.3 10.7 207 172-417 216-479 (538)
205 CHL00095 clpC Clp protease ATP 99.1 2.6E-09 5.6E-14 128.1 19.0 167 175-368 509-734 (821)
206 TIGR00678 holB DNA polymerase 99.1 1E-09 2.2E-14 108.5 12.9 144 206-386 12-183 (188)
207 PRK07399 DNA polymerase III su 99.1 1.2E-09 2.6E-14 116.4 14.1 184 173-398 2-224 (314)
208 TIGR02329 propionate_PrpR prop 99.1 6.6E-10 1.4E-14 125.8 12.7 216 171-419 208-466 (526)
209 TIGR00764 lon_rel lon-related 99.1 4.1E-10 8.9E-15 129.9 11.1 102 321-424 268-392 (608)
210 COG0606 Predicted ATPase with 99.1 1.6E-10 3.4E-15 125.2 7.2 210 171-421 175-483 (490)
211 PF01078 Mg_chelatase: Magnesi 99.1 1.9E-10 4E-15 113.6 5.8 143 173-356 1-205 (206)
212 COG1221 PspF Transcriptional r 99.1 6.8E-10 1.5E-14 119.9 10.6 197 170-405 73-311 (403)
213 TIGR00602 rad24 checkpoint pro 99.0 2.2E-09 4.8E-14 123.2 14.9 258 165-455 74-390 (637)
214 PRK11331 5-methylcytosine-spec 99.0 2.1E-09 4.5E-14 117.7 13.5 156 174-352 174-357 (459)
215 COG0542 clpA ATP-binding subun 99.0 2.5E-09 5.3E-14 123.5 14.7 220 171-422 166-412 (786)
216 TIGR02031 BchD-ChlD magnesium 99.0 1E-09 2.2E-14 126.4 11.2 188 209-424 17-259 (589)
217 PF07728 AAA_5: AAA domain (dy 99.0 2.2E-10 4.8E-15 107.3 4.6 113 210-344 1-139 (139)
218 TIGR00954 3a01203 Peroxysomal 99.0 3.4E-09 7.3E-14 124.3 14.8 114 107-231 358-501 (659)
219 TIGR01817 nifA Nif-specific re 99.0 3.3E-09 7.1E-14 121.7 14.3 208 169-418 190-440 (534)
220 PRK05707 DNA polymerase III su 99.0 3.8E-09 8.3E-14 113.2 13.4 156 206-395 20-203 (328)
221 PLN03232 ABC transporter C fam 99.0 6.4E-10 1.4E-14 140.9 8.7 158 114-282 1172-1404(1495)
222 PRK05022 anaerobic nitric oxid 99.0 3.9E-09 8.4E-14 120.2 13.9 206 173-417 185-437 (509)
223 PRK11608 pspF phage shock prot 99.0 7.7E-09 1.7E-13 111.1 15.3 192 173-403 4-240 (326)
224 PRK04132 replication factor C 99.0 5.9E-09 1.3E-13 122.7 15.4 172 210-420 566-751 (846)
225 PRK10522 multidrug transporter 99.0 6.9E-10 1.5E-14 127.7 7.5 162 110-282 261-482 (547)
226 TIGR02974 phageshock_pspF psp 99.0 5.2E-09 1.1E-13 112.4 13.6 188 177-403 1-233 (329)
227 KOG1942 DNA helicase, TBP-inte 99.0 3E-08 6.6E-13 100.5 17.7 130 267-424 296-439 (456)
228 KOG0991 Replication factor C, 99.0 6.9E-09 1.5E-13 102.2 12.6 203 165-418 17-232 (333)
229 COG4178 ABC-type uncharacteriz 98.9 1.5E-09 3.2E-14 122.3 8.4 171 101-282 312-548 (604)
230 PRK10820 DNA-binding transcrip 98.9 6.8E-09 1.5E-13 118.3 14.0 208 170-416 199-447 (520)
231 PLN03130 ABC transporter C fam 98.9 1.1E-09 2.4E-14 139.0 8.3 160 109-282 1173-1407(1622)
232 COG0470 HolB ATPase involved i 98.9 1.8E-08 4E-13 107.8 16.0 147 176-361 2-176 (325)
233 PRK11388 DNA-binding transcrip 98.9 6.9E-09 1.5E-13 121.6 13.7 208 171-420 321-568 (638)
234 PRK08058 DNA polymerase III su 98.9 5.3E-09 1.2E-13 112.5 11.4 149 173-364 3-180 (329)
235 COG1219 ClpX ATP-dependent pro 98.9 2.2E-09 4.7E-14 110.1 7.7 107 177-285 63-180 (408)
236 PF06068 TIP49: TIP49 C-termin 98.9 2.1E-08 4.5E-13 106.2 15.2 67 173-246 22-90 (398)
237 COG1220 HslU ATP-dependent pro 98.9 7.7E-09 1.7E-13 106.9 11.4 84 268-363 251-346 (444)
238 KOG0741 AAA+-type ATPase [Post 98.9 2E-08 4.3E-13 109.0 14.5 143 207-363 537-683 (744)
239 PRK15429 formate hydrogenlyase 98.9 2.5E-08 5.4E-13 117.8 16.5 196 171-403 372-609 (686)
240 TIGR01271 CFTR_protein cystic 98.8 5.6E-09 1.2E-13 132.3 9.7 112 109-231 1136-1268(1490)
241 PRK13765 ATP-dependent proteas 98.8 2.2E-08 4.7E-13 115.4 12.6 100 321-422 277-399 (637)
242 PF07724 AAA_2: AAA domain (Cd 98.8 7E-09 1.5E-13 100.8 6.7 113 208-333 3-132 (171)
243 PTZ00111 DNA replication licen 98.8 7E-08 1.5E-12 113.2 15.6 129 205-361 489-652 (915)
244 KOG1514 Origin recognition com 98.8 1.6E-07 3.5E-12 105.6 17.4 193 210-426 424-658 (767)
245 PF00158 Sigma54_activat: Sigm 98.8 3.9E-08 8.5E-13 95.3 11.0 93 177-282 1-108 (168)
246 TIGR00957 MRP_assoc_pro multi 98.8 6.6E-08 1.4E-12 123.0 15.9 166 106-282 568-793 (1522)
247 COG1239 ChlI Mg-chelatase subu 98.8 3.9E-08 8.5E-13 105.5 11.4 158 171-367 13-233 (423)
248 PRK06871 DNA polymerase III su 98.8 1.5E-07 3.3E-12 100.4 15.7 129 206-365 22-178 (325)
249 PRK06964 DNA polymerase III su 98.7 3.5E-08 7.6E-13 105.9 10.2 132 206-365 19-203 (342)
250 KOG0990 Replication factor C, 98.7 1E-07 2.2E-12 98.4 12.2 249 162-457 28-304 (360)
251 PF13177 DNA_pol3_delta2: DNA 98.7 8.3E-08 1.8E-12 92.6 10.6 133 179-352 1-160 (162)
252 PRK07993 DNA polymerase III su 98.7 1E-07 2.3E-12 102.4 12.3 155 206-395 22-204 (334)
253 COG1116 TauB ABC-type nitrate/ 98.7 9.2E-09 2E-13 103.6 3.5 80 202-281 23-162 (248)
254 TIGR02915 PEP_resp_reg putativ 98.7 1E-07 2.2E-12 107.0 11.9 207 173-417 137-383 (445)
255 PRK08769 DNA polymerase III su 98.7 4.2E-07 9.1E-12 96.8 15.7 157 206-395 24-208 (319)
256 PRK08116 hypothetical protein; 98.7 1.3E-07 2.9E-12 98.7 11.7 69 208-278 114-189 (268)
257 PF07726 AAA_3: ATPase family 98.7 6.7E-09 1.4E-13 94.6 1.6 109 210-344 1-129 (131)
258 KOG2227 Pre-initiation complex 98.7 8.1E-07 1.7E-11 96.0 17.2 205 175-408 150-384 (529)
259 KOG0745 Putative ATP-dependent 98.6 8.8E-08 1.9E-12 102.0 9.5 74 210-283 228-307 (564)
260 PRK12377 putative replication 98.6 2.9E-07 6.4E-12 94.6 12.8 70 208-279 101-175 (248)
261 PRK07952 DNA replication prote 98.6 4E-07 8.7E-12 93.4 12.6 101 170-279 67-174 (244)
262 PRK11361 acetoacetate metaboli 98.6 7.1E-07 1.5E-11 100.5 15.3 207 173-420 141-390 (457)
263 PRK06090 DNA polymerase III su 98.6 5.4E-07 1.2E-11 95.9 12.9 129 206-364 23-178 (319)
264 COG2884 FtsE Predicted ATPase 98.6 1.2E-07 2.7E-12 91.2 7.0 30 202-231 22-51 (223)
265 PRK10923 glnG nitrogen regulat 98.5 2.9E-07 6.2E-12 104.1 10.8 207 173-420 136-385 (469)
266 PRK08181 transposase; Validate 98.5 6.7E-07 1.5E-11 93.1 12.4 72 207-280 105-180 (269)
267 PF01637 Arch_ATPase: Archaeal 98.5 8E-07 1.7E-11 89.8 12.6 184 178-394 2-233 (234)
268 COG1117 PstB ABC-type phosphat 98.5 3.4E-07 7.3E-12 89.8 8.9 57 252-330 152-208 (253)
269 TIGR01271 CFTR_protein cystic 98.5 8.1E-07 1.8E-11 113.0 14.7 171 109-282 332-581 (1490)
270 PRK13406 bchD magnesium chelat 98.5 6.2E-07 1.3E-11 102.8 12.0 189 209-425 26-252 (584)
271 COG1136 SalX ABC-type antimicr 98.5 1.4E-07 3.1E-12 94.7 5.8 31 252-282 145-175 (226)
272 PRK15115 response regulator Gl 98.5 3.8E-07 8.3E-12 102.3 9.9 181 208-420 157-381 (444)
273 PRK06526 transposase; Provisio 98.5 3.1E-07 6.7E-12 95.0 8.4 72 207-280 97-172 (254)
274 COG4619 ABC-type uncharacteriz 98.5 4.9E-07 1.1E-11 85.3 8.6 74 252-352 136-209 (223)
275 COG1126 GlnQ ABC-type polar am 98.5 1.5E-07 3.2E-12 92.5 5.1 30 252-281 139-168 (240)
276 PRK08939 primosomal protein Dn 98.5 1.2E-06 2.5E-11 93.2 12.3 101 171-278 123-228 (306)
277 PF03969 AFG1_ATPase: AFG1-lik 98.4 7.6E-07 1.6E-11 96.5 10.0 141 205-380 59-207 (362)
278 COG1484 DnaC DNA replication p 98.4 1.9E-06 4.1E-11 89.3 12.4 72 207-279 104-179 (254)
279 COG1121 ZnuC ABC-type Mn/Zn tr 98.4 8.8E-08 1.9E-12 97.6 2.5 60 252-333 142-201 (254)
280 TIGR01818 ntrC nitrogen regula 98.4 1.2E-06 2.6E-11 98.8 11.8 210 175-420 134-381 (463)
281 PRK08699 DNA polymerase III su 98.4 8.8E-07 1.9E-11 94.9 9.9 132 206-364 19-183 (325)
282 PRK09183 transposase/IS protei 98.4 1.3E-06 2.8E-11 90.8 10.9 74 205-279 99-176 (259)
283 KOG2680 DNA helicase TIP49, TB 98.4 8.6E-06 1.9E-10 83.3 15.7 131 267-425 288-431 (454)
284 PF13173 AAA_14: AAA domain 98.4 2.1E-06 4.6E-11 79.3 10.6 69 209-279 3-73 (128)
285 KOG0054 Multidrug resistance-a 98.4 1.3E-06 2.8E-11 107.0 11.5 164 105-282 450-676 (1381)
286 PRK06835 DNA replication prote 98.4 1.8E-06 3.9E-11 92.5 11.2 69 209-279 184-258 (329)
287 COG1124 DppF ABC-type dipeptid 98.4 6.1E-07 1.3E-11 89.9 6.8 31 252-282 144-174 (252)
288 PF01695 IstB_IS21: IstB-like 98.4 7.6E-07 1.7E-11 87.2 7.1 71 206-278 45-119 (178)
289 PF03215 Rad17: Rad17 cell cyc 98.3 7.7E-06 1.7E-10 92.6 15.7 210 164-404 8-269 (519)
290 PTZ00243 ABC transporter; Prov 98.3 8.9E-06 1.9E-10 103.9 17.7 54 101-154 490-543 (1560)
291 KOG0054 Multidrug resistance-a 98.3 2.3E-05 4.9E-10 96.4 19.8 111 109-230 1071-1188(1381)
292 COG1120 FepC ABC-type cobalami 98.3 1.3E-06 2.7E-11 89.7 7.5 31 252-282 141-171 (258)
293 KOG1051 Chaperone HSP104 and r 98.3 5.5E-06 1.2E-10 97.4 13.5 130 176-331 563-711 (898)
294 PRK10365 transcriptional regul 98.3 2.4E-06 5.3E-11 95.6 10.2 203 176-420 140-386 (441)
295 PF13401 AAA_22: AAA domain; P 98.3 5.2E-06 1.1E-10 76.4 10.6 73 208-280 4-100 (131)
296 cd03216 ABC_Carb_Monos_I This 98.3 2.1E-06 4.5E-11 82.9 7.8 79 202-280 20-113 (163)
297 COG1241 MCM2 Predicted ATPase 98.3 4.1E-06 8.9E-11 96.4 11.3 221 174-424 285-593 (682)
298 COG3267 ExeA Type II secretory 98.3 4.1E-05 9E-10 77.4 17.0 183 210-417 53-267 (269)
299 smart00763 AAA_PrkA PrkA AAA d 98.3 1.6E-06 3.4E-11 92.9 7.3 84 174-263 49-144 (361)
300 PF14532 Sigma54_activ_2: Sigm 98.3 1.1E-06 2.5E-11 82.2 5.5 81 178-282 1-84 (138)
301 KOG0480 DNA replication licens 98.2 5.6E-06 1.2E-10 92.2 11.1 222 174-424 344-644 (764)
302 cd01120 RecA-like_NTPases RecA 98.2 4.8E-06 1E-10 79.0 8.9 72 211-282 2-100 (165)
303 KOG2035 Replication factor C, 98.2 1.3E-05 2.9E-10 81.4 12.2 172 171-386 9-220 (351)
304 COG3842 PotA ABC-type spermidi 98.2 1.2E-06 2.5E-11 93.8 4.9 31 252-282 139-169 (352)
305 COG1485 Predicted ATPase [Gene 98.2 6.7E-06 1.4E-10 86.6 10.1 139 206-378 63-208 (367)
306 COG3283 TyrR Transcriptional r 98.2 2.6E-05 5.7E-10 81.7 14.2 211 170-419 199-445 (511)
307 cd03238 ABC_UvrA The excision 98.2 3.7E-06 8E-11 82.2 7.5 79 202-280 15-120 (176)
308 PRK06921 hypothetical protein; 98.2 7.9E-06 1.7E-10 85.3 10.5 69 207-278 116-188 (266)
309 COG3284 AcoR Transcriptional a 98.2 5.7E-06 1.2E-10 93.0 9.3 204 178-420 316-554 (606)
310 PF00493 MCM: MCM2/3/5 family 98.2 4.2E-07 9.2E-12 97.8 0.3 218 176-423 25-326 (331)
311 KOG1970 Checkpoint RAD17-RFC c 98.2 5.8E-05 1.3E-09 83.3 16.6 172 209-403 111-320 (634)
312 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.1 8.5E-06 1.8E-10 77.0 8.9 77 202-280 20-101 (144)
313 COG1118 CysA ABC-type sulfate/ 98.1 4.9E-06 1.1E-10 85.9 7.3 60 252-332 140-199 (345)
314 COG4608 AppF ABC-type oligopep 98.1 3.2E-06 6.9E-11 86.5 5.9 81 202-282 33-142 (268)
315 cd03222 ABC_RNaseL_inhibitor T 98.1 3.6E-06 7.8E-11 82.4 5.9 76 205-280 22-102 (177)
316 COG1119 ModF ABC-type molybden 98.1 6.9E-06 1.5E-10 82.5 7.4 51 169-230 29-79 (257)
317 PF05729 NACHT: NACHT domain 98.1 3E-05 6.5E-10 74.0 11.7 142 210-368 2-165 (166)
318 PLN03210 Resistant to P. syrin 98.1 3.8E-05 8.2E-10 96.1 15.3 176 170-387 179-388 (1153)
319 PF12775 AAA_7: P-loop contain 98.1 9.6E-06 2.1E-10 84.9 8.5 139 207-368 32-195 (272)
320 KOG0482 DNA replication licens 98.1 1.2E-05 2.6E-10 87.4 9.2 231 176-426 343-641 (721)
321 COG3839 MalK ABC-type sugar tr 98.1 4E-06 8.7E-11 89.3 5.6 31 252-282 136-166 (338)
322 cd03228 ABCC_MRP_Like The MRP 98.1 1.3E-05 2.9E-10 77.9 8.6 110 202-334 22-158 (171)
323 cd03223 ABCD_peroxisomal_ALDP 98.1 1.5E-05 3.3E-10 77.1 8.9 79 202-280 21-122 (166)
324 cd03214 ABC_Iron-Siderophores_ 98.1 2.3E-05 5.1E-10 76.8 10.2 79 202-280 19-128 (180)
325 PF00931 NB-ARC: NB-ARC domain 98.0 0.00012 2.6E-09 77.0 16.1 160 206-396 17-203 (287)
326 cd03230 ABC_DR_subfamily_A Thi 98.0 8.9E-06 1.9E-10 79.2 7.0 80 202-281 20-127 (173)
327 KOG0478 DNA replication licens 98.0 6.4E-05 1.4E-09 84.7 14.2 132 206-356 460-616 (804)
328 cd03213 ABCG_EPDR ABCG transpo 98.0 7.2E-06 1.6E-10 81.5 6.3 79 202-280 29-142 (194)
329 PRK13539 cytochrome c biogenes 98.0 8.3E-06 1.8E-10 81.9 6.7 124 202-355 22-203 (207)
330 cd03247 ABCC_cytochrome_bd The 98.0 2.5E-05 5.5E-10 76.4 9.9 79 202-280 22-129 (178)
331 cd03246 ABCC_Protease_Secretio 98.0 1.1E-05 2.3E-10 78.7 7.2 79 202-280 22-127 (173)
332 PRK07276 DNA polymerase III su 98.0 7.6E-05 1.6E-09 78.4 13.8 154 206-396 22-198 (290)
333 TIGR02237 recomb_radB DNA repa 98.0 3.7E-05 8E-10 77.1 11.1 79 204-282 8-112 (209)
334 PRK13538 cytochrome c biogenes 98.0 1.6E-05 3.6E-10 79.5 8.5 30 202-231 21-50 (204)
335 PRK05917 DNA polymerase III su 98.0 1.6E-05 3.4E-10 83.4 8.5 118 206-353 17-154 (290)
336 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.0 6.1E-06 1.3E-10 83.4 5.4 30 202-231 24-53 (218)
337 COG4181 Predicted ABC-type tra 98.0 2.9E-06 6.3E-11 80.5 2.6 29 202-230 30-58 (228)
338 cd03232 ABC_PDR_domain2 The pl 98.0 3.5E-05 7.6E-10 76.4 10.5 79 202-280 27-139 (192)
339 COG1125 OpuBA ABC-type proline 98.0 1.3E-06 2.8E-11 87.8 0.2 29 252-280 138-166 (309)
340 PRK11650 ugpC glycerol-3-phosp 98.0 2.7E-06 5.9E-11 92.5 2.7 30 252-281 137-166 (356)
341 cd03233 ABC_PDR_domain1 The pl 98.0 2.3E-05 4.9E-10 78.4 9.0 79 202-280 27-149 (202)
342 COG1123 ATPase components of v 98.0 7.5E-06 1.6E-10 91.6 5.9 31 252-282 432-462 (539)
343 PRK05818 DNA polymerase III su 98.0 6.5E-05 1.4E-09 77.2 12.0 121 206-353 5-147 (261)
344 PRK13541 cytochrome c biogenes 98.0 4.3E-05 9.4E-10 75.9 10.5 30 202-231 20-49 (195)
345 cd03259 ABC_Carb_Solutes_like 98.0 9.7E-06 2.1E-10 81.6 5.8 30 202-231 20-49 (213)
346 TIGR02314 ABC_MetN D-methionin 98.0 3.7E-06 8E-11 90.9 2.8 29 202-230 25-53 (343)
347 cd03301 ABC_MalK_N The N-termi 98.0 1.5E-05 3.2E-10 80.3 6.9 31 202-232 20-50 (213)
348 cd03229 ABC_Class3 This class 98.0 6.9E-05 1.5E-09 73.3 11.4 79 202-280 20-131 (178)
349 cd03269 ABC_putative_ATPase Th 98.0 4.7E-05 1E-09 76.5 10.5 30 202-231 20-49 (210)
350 cd03293 ABC_NrtD_SsuB_transpor 98.0 7.9E-06 1.7E-10 82.8 4.8 30 202-231 24-53 (220)
351 COG3840 ThiQ ABC-type thiamine 97.9 5E-06 1.1E-10 79.7 3.0 30 252-281 132-161 (231)
352 PRK09452 potA putrescine/sperm 97.9 4.1E-06 8.8E-11 91.7 2.8 30 252-281 147-176 (375)
353 cd03215 ABC_Carb_Monos_II This 97.9 2.1E-05 4.5E-10 77.3 7.5 79 202-280 20-135 (182)
354 PRK11432 fbpC ferric transport 97.9 8.6E-06 1.9E-10 88.4 5.1 29 202-230 26-54 (351)
355 COG1122 CbiO ABC-type cobalt t 97.9 6.4E-06 1.4E-10 84.1 3.7 31 202-232 24-54 (235)
356 PRK13543 cytochrome c biogenes 97.9 2.4E-05 5.2E-10 79.0 7.9 30 202-231 31-60 (214)
357 cd03217 ABC_FeS_Assembly ABC-t 97.9 4.6E-05 9.9E-10 76.1 9.7 79 202-280 20-135 (200)
358 TIGR02211 LolD_lipo_ex lipopro 97.9 4E-05 8.6E-10 77.6 9.3 30 202-231 25-54 (221)
359 cd03266 ABC_NatA_sodium_export 97.9 2.4E-05 5.2E-10 79.1 7.6 30 202-231 25-54 (218)
360 PF12774 AAA_6: Hydrolytic ATP 97.9 0.00013 2.7E-09 74.5 12.8 128 209-361 33-175 (231)
361 cd03265 ABC_DrrA DrrA is the A 97.9 1.4E-05 3.1E-10 80.9 5.8 30 202-231 20-49 (220)
362 TIGR03864 PQQ_ABC_ATP ABC tran 97.9 5.5E-06 1.2E-10 84.9 2.8 30 202-231 21-50 (236)
363 TIGR03410 urea_trans_UrtE urea 97.9 2.5E-05 5.4E-10 79.6 7.6 30 202-231 20-49 (230)
364 cd03218 ABC_YhbG The ABC trans 97.9 2.7E-05 5.8E-10 79.5 7.7 30 202-231 20-49 (232)
365 cd01124 KaiC KaiC is a circadi 97.9 0.00011 2.4E-09 72.0 11.8 71 211-281 2-109 (187)
366 COG4525 TauB ABC-type taurine 97.9 5.5E-05 1.2E-09 73.4 9.1 29 202-230 25-53 (259)
367 PRK11607 potG putrescine trans 97.9 1.1E-05 2.3E-10 88.5 4.9 31 252-282 152-182 (377)
368 TIGR01166 cbiO cobalt transpor 97.9 5.9E-05 1.3E-09 74.6 9.8 30 202-231 12-41 (190)
369 cd03226 ABC_cobalt_CbiO_domain 97.9 4.6E-05 9.9E-10 76.3 9.1 30 202-231 20-49 (205)
370 cd03292 ABC_FtsE_transporter F 97.9 2.3E-05 4.9E-10 79.0 6.9 31 202-232 21-51 (214)
371 COG1131 CcmA ABC-type multidru 97.9 4E-05 8.8E-10 81.2 9.1 62 252-334 139-200 (293)
372 PRK13540 cytochrome c biogenes 97.9 4.8E-05 1E-09 75.9 9.1 30 202-231 21-50 (200)
373 cd00267 ABC_ATPase ABC (ATP-bi 97.9 2E-05 4.3E-10 75.4 6.1 79 202-280 19-111 (157)
374 cd03268 ABC_BcrA_bacitracin_re 97.9 2.1E-05 4.6E-10 78.8 6.6 30 202-231 20-49 (208)
375 TIGR03265 PhnT2 putative 2-ami 97.9 1.1E-05 2.4E-10 87.7 4.7 30 252-281 137-166 (353)
376 cd03263 ABC_subfamily_A The AB 97.9 9.5E-06 2.1E-10 82.1 3.9 30 202-231 22-51 (220)
377 KOG2383 Predicted ATPase [Gene 97.9 0.00014 3E-09 77.6 12.6 161 206-401 112-298 (467)
378 cd03296 ABC_CysA_sulfate_impor 97.9 3.8E-05 8.3E-10 78.8 8.4 30 202-231 22-51 (239)
379 PRK07132 DNA polymerase III su 97.9 0.00043 9.3E-09 73.3 16.4 127 206-364 16-160 (299)
380 cd03225 ABC_cobalt_CbiO_domain 97.9 3.3E-05 7.2E-10 77.6 7.7 30 202-231 21-50 (211)
381 cd03258 ABC_MetN_methionine_tr 97.9 2.6E-05 5.6E-10 79.7 7.0 30 202-231 25-54 (233)
382 COG4133 CcmA ABC-type transpor 97.9 6.3E-05 1.4E-09 72.7 8.9 117 202-340 22-199 (209)
383 COG1127 Ttg2A ABC-type transpo 97.9 3.5E-05 7.5E-10 77.3 7.4 29 202-230 28-56 (263)
384 TIGR02673 FtsE cell division A 97.9 2.7E-05 5.9E-10 78.4 6.8 30 202-231 22-51 (214)
385 cd03261 ABC_Org_Solvent_Resist 97.9 1.5E-05 3.3E-10 81.5 5.1 30 202-231 20-49 (235)
386 PRK11248 tauB taurine transpor 97.9 2.6E-05 5.7E-10 81.0 6.9 31 202-232 21-51 (255)
387 TIGR00960 3a0501s02 Type II (G 97.9 3E-05 6.5E-10 78.2 7.1 30 202-231 23-52 (216)
388 cd03283 ABC_MutS-like MutS-lik 97.9 6.2E-05 1.3E-09 75.2 9.3 74 204-278 21-116 (199)
389 TIGR01188 drrA daunorubicin re 97.9 1.6E-05 3.4E-10 84.8 5.2 30 202-231 13-42 (302)
390 PRK11000 maltose/maltodextrin 97.8 1.4E-05 2.9E-10 87.6 4.8 30 202-231 23-52 (369)
391 TIGR01184 ntrCD nitrate transp 97.8 1.7E-05 3.7E-10 81.0 5.2 31 202-232 5-35 (230)
392 cd03231 ABC_CcmA_heme_exporter 97.8 2.3E-05 5E-10 78.3 5.9 31 202-232 20-50 (201)
393 PRK11153 metN DL-methionine tr 97.8 7.9E-06 1.7E-10 88.6 2.7 30 202-231 25-54 (343)
394 TIGR01618 phage_P_loop phage n 97.8 7.9E-05 1.7E-09 75.2 9.7 24 207-230 11-34 (220)
395 TIGR01189 ccmA heme ABC export 97.8 3.3E-05 7.2E-10 76.9 7.0 30 202-231 20-49 (198)
396 cd03262 ABC_HisP_GlnQ_permease 97.8 5E-05 1.1E-09 76.4 8.2 30 202-231 20-49 (213)
397 cd03295 ABC_OpuCA_Osmoprotecti 97.8 3.9E-05 8.5E-10 78.9 7.4 30 202-231 21-50 (242)
398 PRK11308 dppF dipeptide transp 97.8 2.3E-05 5E-10 84.4 5.9 30 202-231 35-64 (327)
399 COG1135 AbcC ABC-type metal io 97.8 2.3E-05 5E-10 81.2 5.5 31 252-282 144-174 (339)
400 PRK13648 cbiO cobalt transport 97.8 5.3E-05 1.1E-09 79.3 8.4 30 202-231 29-58 (269)
401 PRK11629 lolD lipoprotein tran 97.8 2.1E-05 4.5E-10 80.4 5.3 30 202-231 29-58 (233)
402 PRK09544 znuC high-affinity zi 97.8 3.6E-05 7.8E-10 79.7 7.0 79 202-280 24-151 (251)
403 PRK11247 ssuB aliphatic sulfon 97.8 2.1E-05 4.5E-10 81.8 5.2 79 202-280 32-164 (257)
404 cd03237 ABC_RNaseL_inhibitor_d 97.8 2.7E-05 5.8E-10 80.4 5.9 77 205-281 22-147 (246)
405 TIGR01186 proV glycine betaine 97.8 1.1E-05 2.4E-10 87.7 3.1 30 202-231 13-42 (363)
406 COG1618 Predicted nucleotide k 97.8 0.00011 2.3E-09 69.4 9.1 27 206-232 3-29 (179)
407 cd03298 ABC_ThiQ_thiamine_tran 97.8 4E-05 8.6E-10 77.1 6.8 30 202-231 18-47 (211)
408 PRK14257 phosphate ABC transpo 97.8 3.4E-05 7.3E-10 83.1 6.6 31 202-232 102-132 (329)
409 TIGR01257 rim_protein retinal- 97.8 0.00029 6.2E-09 90.9 15.4 59 252-333 1064-1122(2272)
410 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.8 3.3E-05 7.2E-10 78.6 5.8 31 202-232 42-72 (224)
411 TIGR03740 galliderm_ABC gallid 97.8 4.6E-05 1E-09 77.3 6.9 31 202-232 20-50 (223)
412 TIGR02315 ABC_phnC phosphonate 97.8 8.8E-05 1.9E-09 76.2 9.0 30 202-231 22-51 (243)
413 cd03256 ABC_PhnC_transporter A 97.8 5.9E-05 1.3E-09 77.4 7.7 30 202-231 21-50 (241)
414 TIGR01288 nodI ATP-binding ABC 97.8 2.7E-05 5.9E-10 83.0 5.2 30 202-231 24-53 (303)
415 PRK10247 putative ABC transpor 97.8 9.5E-05 2.1E-09 75.2 9.0 30 202-231 27-56 (225)
416 PRK13537 nodulation ABC transp 97.8 7.7E-05 1.7E-09 79.6 8.7 61 252-334 141-201 (306)
417 PRK10851 sulfate/thiosulfate t 97.8 3.4E-05 7.3E-10 83.9 6.0 30 202-231 22-51 (353)
418 cd03267 ABC_NatA_like Similar 97.8 9.7E-05 2.1E-09 75.8 9.1 30 202-231 41-70 (236)
419 PRK14250 phosphate ABC transpo 97.8 8.7E-05 1.9E-09 76.3 8.7 30 202-231 23-52 (241)
420 PRK13635 cbiO cobalt transport 97.8 3.3E-05 7.1E-10 81.3 5.7 30 202-231 27-56 (279)
421 PRK08533 flagellar accessory p 97.8 0.00022 4.7E-09 72.9 11.5 77 204-280 20-130 (230)
422 PRK13650 cbiO cobalt transport 97.7 3.1E-05 6.7E-10 81.5 5.3 30 202-231 27-56 (279)
423 PRK11124 artP arginine transpo 97.7 0.00023 4.9E-09 73.2 11.5 31 202-232 22-52 (242)
424 TIGR01277 thiQ thiamine ABC tr 97.7 3.2E-05 6.9E-10 78.0 5.0 31 202-232 18-48 (213)
425 cd03224 ABC_TM1139_LivF_branch 97.7 3.5E-05 7.5E-10 78.1 5.3 29 202-230 20-48 (222)
426 PRK13652 cbiO cobalt transport 97.7 8.6E-05 1.9E-09 78.1 8.4 30 202-231 24-53 (277)
427 PRK10584 putative ABC transpor 97.7 3.7E-05 8E-10 78.3 5.5 30 202-231 30-59 (228)
428 cd03235 ABC_Metallic_Cations A 97.7 0.00011 2.5E-09 73.9 9.0 30 202-231 19-48 (213)
429 PRK10771 thiQ thiamine transpo 97.7 4.6E-05 1E-09 77.8 6.1 30 202-231 19-48 (232)
430 TIGR03608 L_ocin_972_ABC putat 97.7 6.1E-05 1.3E-09 75.3 6.9 31 202-232 18-48 (206)
431 PRK09493 glnQ glutamine ABC tr 97.7 0.00013 2.7E-09 75.0 9.4 30 202-231 21-50 (240)
432 cd01121 Sms Sms (bacterial rad 97.7 8.2E-05 1.8E-09 81.2 8.3 79 204-282 78-173 (372)
433 PRK13632 cbiO cobalt transport 97.7 4.6E-05 9.9E-10 79.9 6.2 30 202-231 29-58 (271)
434 PRK10575 iron-hydroxamate tran 97.7 2.5E-05 5.5E-10 81.5 4.2 30 202-231 31-60 (265)
435 TIGR03258 PhnT 2-aminoethylpho 97.7 3.4E-05 7.4E-10 84.1 5.3 30 202-231 25-54 (362)
436 cd03294 ABC_Pro_Gly_Bertaine T 97.7 7.8E-05 1.7E-09 78.0 7.9 31 202-232 44-74 (269)
437 COG3638 ABC-type phosphate/pho 97.7 9.2E-05 2E-09 74.1 7.5 29 202-230 24-52 (258)
438 PRK10908 cell division protein 97.7 6.9E-05 1.5E-09 76.0 6.9 30 202-231 22-51 (222)
439 cd03300 ABC_PotA_N PotA is an 97.7 0.00016 3.5E-09 73.9 9.5 31 202-232 20-50 (232)
440 PF13191 AAA_16: AAA ATPase do 97.7 9.4E-05 2E-09 72.1 7.5 59 177-244 2-63 (185)
441 KOG0477 DNA replication licens 97.7 0.00016 3.4E-09 80.7 9.7 33 207-239 481-513 (854)
442 cd03264 ABC_drug_resistance_li 97.7 3.3E-05 7.2E-10 77.6 4.2 59 252-333 133-191 (211)
443 PRK11614 livF leucine/isoleuci 97.7 9.7E-05 2.1E-09 75.7 7.7 29 202-230 25-53 (237)
444 PHA00729 NTP-binding motif con 97.7 7.2E-05 1.6E-09 75.5 6.5 24 210-233 19-42 (226)
445 TIGR03522 GldA_ABC_ATP gliding 97.7 4.7E-05 1E-09 81.1 5.3 30 202-231 22-51 (301)
446 PRK11144 modC molybdate transp 97.7 3.8E-05 8.3E-10 83.5 4.7 31 202-232 18-48 (352)
447 TIGR03005 ectoine_ehuA ectoine 97.7 0.0001 2.2E-09 76.3 7.6 31 202-232 20-50 (252)
448 cd03219 ABC_Mj1267_LivG_branch 97.7 0.00013 2.8E-09 74.6 8.3 30 202-231 20-49 (236)
449 PRK10070 glycine betaine trans 97.7 2.2E-05 4.7E-10 86.6 2.6 30 202-231 48-77 (400)
450 PRK06067 flagellar accessory p 97.7 0.00036 7.9E-09 71.3 11.6 40 204-243 21-63 (234)
451 PRK11823 DNA repair protein Ra 97.7 0.0005 1.1E-08 77.1 13.5 79 204-282 76-171 (446)
452 PRK10895 lipopolysaccharide AB 97.7 0.00016 3.5E-09 74.2 9.0 30 202-231 23-52 (241)
453 PRK09536 btuD corrinoid ABC tr 97.7 2.6E-05 5.6E-10 86.0 3.2 60 252-333 142-201 (402)
454 PRK11022 dppD dipeptide transp 97.7 5.7E-05 1.2E-09 81.3 5.8 31 202-232 27-57 (326)
455 PRK13548 hmuV hemin importer A 97.7 0.00014 2.9E-09 75.7 8.4 30 202-231 22-51 (258)
456 cd03250 ABCC_MRP_domain1 Domai 97.7 9.5E-05 2.1E-09 73.9 7.0 79 202-280 25-158 (204)
457 PF00005 ABC_tran: ABC transpo 97.7 3.8E-05 8.1E-10 71.4 3.8 31 202-232 5-35 (137)
458 PRK11831 putative ABC transpor 97.7 4.3E-05 9.4E-10 80.0 4.6 30 202-231 27-56 (269)
459 KOG2170 ATPase of the AAA+ sup 97.6 0.0025 5.4E-08 66.1 17.0 95 177-280 84-191 (344)
460 cd03253 ABCC_ATM1_transporter 97.6 5.9E-05 1.3E-09 77.2 5.4 30 202-231 21-50 (236)
461 cd03369 ABCC_NFT1 Domain 2 of 97.6 0.00021 4.6E-09 71.6 9.3 79 202-280 28-156 (207)
462 cd03252 ABCC_Hemolysin The ABC 97.6 5.7E-05 1.2E-09 77.4 5.2 30 202-231 22-51 (237)
463 PRK15079 oligopeptide ABC tran 97.6 6.8E-05 1.5E-09 80.9 6.0 29 202-230 41-69 (331)
464 PRK11264 putative amino-acid A 97.6 9.1E-05 2E-09 76.5 6.8 31 202-232 23-53 (250)
465 cd01128 rho_factor Transcripti 97.6 0.00054 1.2E-08 70.7 12.3 81 205-285 13-121 (249)
466 PRK10253 iron-enterobactin tra 97.6 0.00021 4.6E-09 74.6 9.5 30 202-231 27-56 (265)
467 PRK15112 antimicrobial peptide 97.6 0.00011 2.4E-09 76.7 7.4 31 202-232 33-63 (267)
468 PRK09361 radB DNA repair and r 97.6 0.00042 9E-09 70.4 11.4 79 204-282 19-122 (225)
469 PRK13638 cbiO cobalt transport 97.6 0.0001 2.3E-09 77.1 7.1 30 202-231 21-50 (271)
470 PRK13646 cbiO cobalt transport 97.6 0.00018 4E-09 75.9 9.0 30 202-231 27-56 (286)
471 TIGR02012 tigrfam_recA protein 97.6 0.00035 7.5E-09 74.5 11.0 79 204-282 51-148 (321)
472 TIGR02142 modC_ABC molybdenum 97.6 4.7E-05 1E-09 82.9 4.6 30 202-231 17-46 (354)
473 cd03299 ABC_ModC_like Archeal 97.6 0.00015 3.3E-09 74.2 8.0 30 202-231 19-48 (235)
474 TIGR00968 3a0106s01 sulfate AB 97.6 0.00022 4.8E-09 73.1 9.2 30 202-231 20-49 (237)
475 cd03297 ABC_ModC_molybdenum_tr 97.6 0.00011 2.3E-09 74.2 6.7 30 202-232 18-47 (214)
476 PRK13536 nodulation factor exp 97.6 0.00024 5.2E-09 76.9 9.8 60 252-333 175-234 (340)
477 cd03289 ABCC_CFTR2 The CFTR su 97.6 6.3E-05 1.4E-09 79.0 5.0 31 202-232 24-54 (275)
478 PRK13546 teichoic acids export 97.6 8.2E-05 1.8E-09 77.7 5.9 31 202-232 44-74 (264)
479 PRK13647 cbiO cobalt transport 97.6 9.4E-05 2E-09 77.6 6.3 30 202-231 25-54 (274)
480 PRK13644 cbiO cobalt transport 97.6 0.00012 2.5E-09 76.9 7.0 30 202-231 22-51 (274)
481 PRK13640 cbiO cobalt transport 97.6 9.9E-05 2.1E-09 77.8 6.5 31 202-232 27-57 (282)
482 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.6 8.3E-05 1.8E-09 76.2 5.7 30 202-231 23-52 (238)
483 PF00910 RNA_helicase: RNA hel 97.6 4.5E-05 9.7E-10 68.2 3.2 23 211-233 1-23 (107)
484 cd03248 ABCC_TAP TAP, the Tran 97.6 0.00016 3.5E-09 73.4 7.8 30 202-231 34-63 (226)
485 PRK13642 cbiO cobalt transport 97.6 3.5E-05 7.6E-10 81.0 2.9 30 202-231 27-56 (277)
486 cd03257 ABC_NikE_OppD_transpor 97.6 0.00016 3.4E-09 73.6 7.5 30 202-231 25-54 (228)
487 PRK14247 phosphate ABC transpo 97.6 0.00028 6.1E-09 72.9 9.4 31 202-232 23-53 (250)
488 cd03245 ABCC_bacteriocin_expor 97.6 8.7E-05 1.9E-09 75.1 5.5 30 202-231 24-53 (220)
489 cd03254 ABCC_Glucan_exporter_l 97.6 0.00027 5.8E-09 72.0 9.2 31 202-232 23-53 (229)
490 PRK13637 cbiO cobalt transport 97.6 7.5E-05 1.6E-09 78.9 5.2 30 202-231 27-56 (287)
491 PTZ00202 tuzin; Provisional 97.6 0.0036 7.9E-08 68.5 17.9 62 172-242 259-320 (550)
492 PF14516 AAA_35: AAA-like doma 97.6 0.0033 7.2E-08 67.8 17.9 177 206-399 29-243 (331)
493 PRK13633 cobalt transporter AT 97.6 3.7E-05 8E-10 81.0 2.7 30 202-231 30-59 (280)
494 PRK11300 livG leucine/isoleuci 97.6 0.00011 2.5E-09 76.0 6.4 30 202-231 25-54 (255)
495 KOG0927 Predicted transporter 97.6 0.00012 2.7E-09 80.7 6.8 102 168-280 386-540 (614)
496 COG4172 ABC-type uncharacteriz 97.6 0.00022 4.8E-09 76.2 8.3 31 252-282 429-459 (534)
497 PRK13636 cbiO cobalt transport 97.6 7.7E-05 1.7E-09 78.7 5.0 30 202-231 26-55 (283)
498 TIGR02770 nickel_nikD nickel i 97.6 0.00025 5.5E-09 72.3 8.7 31 202-232 6-36 (230)
499 TIGR02982 heterocyst_DevA ABC 97.6 4.3E-05 9.3E-10 77.4 3.0 30 202-231 25-54 (220)
500 TIGR00767 rho transcription te 97.6 0.00015 3.2E-09 78.8 7.2 29 205-233 165-193 (415)
No 1
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-94 Score=759.00 Aligned_cols=438 Identities=40% Similarity=0.656 Sum_probs=410.0
Q ss_pred cCCCCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHH
Q 005611 167 DGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 246 (688)
Q Consensus 167 ~~~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~ 246 (688)
....+++|+||.|+|++|++|+++++++++|..|.++|.+.|+||||+||||||||+||||+|+++++|||+.++++|-+
T Consensus 296 ~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdE 375 (752)
T KOG0734|consen 296 EQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDE 375 (752)
T ss_pred hhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhh
Confidence 34468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEE
Q 005611 247 VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLA 326 (688)
Q Consensus 247 ~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIa 326 (688)
+++|.|.+++|++|+.|+.++||||||||||+++.+|... ......+++||||.+||+|.++.+||||+
T Consensus 376 m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~-----------~~~y~kqTlNQLLvEmDGF~qNeGiIvig 444 (752)
T KOG0734|consen 376 MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPS-----------DQHYAKQTLNQLLVEMDGFKQNEGIIVIG 444 (752)
T ss_pred hhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCcc-----------HHHHHHHHHHHHHHHhcCcCcCCceEEEe
Confidence 9999999999999999999999999999999999988641 22367889999999999999999999999
Q ss_pred ecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 005611 327 ATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRK 406 (688)
Q Consensus 327 aTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~G~s~~dL~~lv~~A~~~A~~~ 406 (688)
+||.|+.||++|.||||||++|.+|.||...|.+||+.|+.++.+..++|+.-||+-|+||||+||+|++|+|+..|..+
T Consensus 445 ATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~d 524 (752)
T KOG0734|consen 445 ATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVD 524 (752)
T ss_pred ccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccHHHHHHHHHhhccCCCccCccccCCcchhHHHHHHHHHHHHHHhhhcccccccccceeeeeeccccCceeEEec
Q 005611 407 GHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQTLSQLVFHR 486 (688)
Q Consensus 407 ~~~~I~~~di~~Al~~~~~g~~~~~~~~~~~~~~~ia~hE~GhAvv~~~l~~~~~~~~~~v~~vsI~prg~~lg~~~~~~ 486 (688)
+...+++.|++.|-+++..|+++++..++++.++..||||.|||+++.+.... .|++|+||.|||.+||.+.+.|
T Consensus 525 ga~~VtM~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~GHAivA~yTk~A-----~PlhKaTImPRG~sLG~t~~LP 599 (752)
T KOG0734|consen 525 GAEMVTMKHLEFAKDRILMGPERKSMVIDEEAKKITAYHEGGHAIVALYTKGA-----MPLHKATIMPRGPSLGHTSQLP 599 (752)
T ss_pred CcccccHHHHhhhhhheeecccccccccChhhhhhhhhhccCceEEEeecCCC-----ccccceeeccCCccccceeecC
Confidence 99999999999999999999999999999999999999999999999988877 8999999999999999999999
Q ss_pred CCCcccccCCHHHHHHHHHHHhhHHHHHHHHhCC--ccCCCCcchHHHHHHHHHHHHHHhcCCccccccCCCCccccccc
Q 005611 487 LDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQ--DTSRASVNYLADASWLARKILTIWNLENPMVIHGEPPPWRKKVK 564 (688)
Q Consensus 487 ~~~~~~~~~t~~~l~~~i~v~LaGraAEei~fG~--~stga~~~Dl~~At~lA~~mv~~~Gm~~~~~~~~g~~~~~~~~~ 564 (688)
. .+.+..+ |.++++++.||||||+|||++||. +||||++ ||.+||++|+.||+.||||+++ ||+.+..+..
T Consensus 600 e-~D~~~~T-k~q~LA~lDV~MGGRvAEELIfG~D~iTsGAss-Dl~qAT~lA~~MVt~fGMSd~v----G~v~~~~~~~ 672 (752)
T KOG0734|consen 600 E-KDRYSIT-KAQLLARLDVCMGGRVAEELIFGTDKITSGASS-DLDQATKLARRMVTKFGMSDKV----GPVTLSAEDN 672 (752)
T ss_pred c-cchhhHH-HHHHHHHHHHhhcchHHHHHhccCCcccccccc-hHHHHHHHHHHHHHHcCccccc----cceeeeccCC
Confidence 7 5667776 999999999999999999999995 5889987 9999999999999999999999 9987765431
Q ss_pred ccCCCcccCCCccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHh
Q 005611 565 FVGPRLDFEGSLYDDYGLTEPPVNFNLDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEIDFILN 644 (688)
Q Consensus 565 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~a~~~a~~lL~~~~~~l~~la~~Lle~e~L~~~ei~~il~ 644 (688)
.........+.++.+|.++|+++|+||+.||+.|...+++||++|+++|||+++||+++++
T Consensus 673 -------------------~~s~~~~t~~lidaEi~~lL~~sYeRak~iL~~h~kEl~~LA~ALleYETL~A~eik~vl~ 733 (752)
T KOG0734|consen 673 -------------------SSSLSPRTQELIDAEIKRLLRDSYERAKSILKTHKKELHALAEALLEYETLDAKEIKRVLK 733 (752)
T ss_pred -------------------CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHh
Confidence 0113333445678899999999999999999999999999999999999999999999998
Q ss_pred cC
Q 005611 645 NY 646 (688)
Q Consensus 645 ~~ 646 (688)
..
T Consensus 734 g~ 735 (752)
T KOG0734|consen 734 GK 735 (752)
T ss_pred cc
Confidence 54
No 2
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-88 Score=748.76 Aligned_cols=460 Identities=44% Similarity=0.741 Sum_probs=431.7
Q ss_pred ccccccccccccccCCCCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 005611 154 GIDFSRSKAEARVDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG 233 (688)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~ 233 (688)
...+++++++...+....++|+||.|.|++|+++.++++++++|..|..+|.+.|+|++|+||||||||+||+++|++++
T Consensus 129 ~~~~gkskak~~~~~~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~ 208 (596)
T COG0465 129 AFSFGKSKAKLYLEDQVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG 208 (596)
T ss_pred ccCCChHHHHHhcccccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccC
Confidence 35667777777777788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeeCchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHh
Q 005611 234 VPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIEL 313 (688)
Q Consensus 234 ~~~~~v~~~~~~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~l 313 (688)
+||+.+++++|.+.++|.+.+++|++|.+|++++|||+||||+|+++..|..+.++ .+.++++++|++|.+|
T Consensus 209 VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~Gg--------gnderEQTLNQlLvEm 280 (596)
T COG0465 209 VPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGG--------GNDEREQTLNQLLVEM 280 (596)
T ss_pred CCceeccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCC--------CchHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999766555 7889999999999999
Q ss_pred cCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccCHHHHHhhCCCCCHHHHH
Q 005611 314 DGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLA 393 (688)
Q Consensus 314 d~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~G~s~~dL~ 393 (688)
|++..+.+|+|||+||+|+.+|++|+||||||+.|.++.||...|++|++.|+++.++.+++|+..+|+.|+||+++|+.
T Consensus 281 DGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~ 360 (596)
T COG0465 281 DGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLA 360 (596)
T ss_pred ccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCccccHHHHHHHHHhhccCCCccCccccCCcchhHHHHHHHHHHHHHHhhhcccccccccceeeee
Q 005611 394 QLVQEAALVAVRKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIV 473 (688)
Q Consensus 394 ~lv~~A~~~A~~~~~~~I~~~di~~Al~~~~~g~~~~~~~~~~~~~~~ia~hE~GhAvv~~~l~~~~~~~~~~v~~vsI~ 473 (688)
+++|+|+..|.++++..|++.||++|++++..|+++++..+++.+++.+||||+|||+++++++.. ++++|+||+
T Consensus 361 nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~erks~vise~ek~~~AYhEaghalv~~~l~~~-----d~v~KvtIi 435 (596)
T COG0465 361 NLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERKSRVISEAEKKITAYHEAGHALVGLLLPDA-----DPVHKVTII 435 (596)
T ss_pred hhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCcCcCCcccChhhhcchHHHHHHHHHHHHhCCCC-----cccceeeec
Confidence 999999999999999999999999999999999999999999999999999999999999999988 899999999
Q ss_pred eccccCceeEEecCCCcccccCCHHHHHHHHHHHhhHHHHHHHHhC-CccCCCCcchHHHHHHHHHHHHHHhcCCccccc
Q 005611 474 PRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYG-QDTSRASVNYLADASWLARKILTIWNLENPMVI 552 (688)
Q Consensus 474 prg~~lg~~~~~~~~~~~~~~~t~~~l~~~i~v~LaGraAEei~fG-~~stga~~~Dl~~At~lA~~mv~~~Gm~~~~~~ 552 (688)
|||+++||+++.|. ++.++.+ +++++++|+++||||||||++|| ++|||+++ |+++||.+|+.||++|||++.+
T Consensus 436 PrG~alG~t~~~Pe-~d~~l~s-k~~l~~~i~~~lgGRaAEel~~g~e~ttGa~~-D~~~at~~ar~mVt~~Gms~~l-- 510 (596)
T COG0465 436 PRGRALGYTLFLPE-EDKYLMS-KEELLDRIDVLLGGRAAEELIFGYEITTGASN-DLEKATDLARAMVTEYGMSAKL-- 510 (596)
T ss_pred cCchhhcchhcCCc-ccccccc-HHHHHHHHHHHhCCcHhhhhhhcccccccchh-hHHHHHHHHHHhhhhcCcchhh--
Confidence 99999999999997 4677776 99999999999999999999999 99999998 9999999999999999999999
Q ss_pred cCCCCcccccc-cccCCCcccCCCccCCCCCCCCCCCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 005611 553 HGEPPPWRKKV-KFVGPRLDFEGSLYDDYGLTEPPVNFNLDDDIA----WRTEELLRDMYGRTVTLLRRHHAALLKTVKV 627 (688)
Q Consensus 553 ~~g~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~ll~~a~~~a~~lL~~~~~~l~~la~~ 627 (688)
|++.|...+ .|+|++. ..+.+|+.++ .+|++++.++|++|+++|.+|++.++.+++.
T Consensus 511 --G~v~~~~~~~~flg~~~----------------~~~~~Se~ta~~ID~evk~ii~~~y~~a~~il~~~~~~l~~~~~~ 572 (596)
T COG0465 511 --GPVAYEQVEGVFLGRYQ----------------KAKNYSEETAQEIDREVKDIIDEAYERAKELLNENKDALETLAEM 572 (596)
T ss_pred --Cceehhhcccccccccc----------------cccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999998765 5776543 2344555554 5569999999999999999999999999999
Q ss_pred HHHhcccCHHHHHHHHhcCCCC
Q 005611 628 LLNQKEIGREEIDFILNNYPPQ 649 (688)
Q Consensus 628 Lle~e~L~~~ei~~il~~~~~~ 649 (688)
|+|+|||++++|..|++.++.+
T Consensus 573 Lle~Eti~~~~i~~i~~~~~~~ 594 (596)
T COG0465 573 LLEKETIDAEEIKDILAGRKLP 594 (596)
T ss_pred HHHhhccCHHHHHHHHhcccCC
Confidence 9999999999999999977543
No 3
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-87 Score=748.22 Aligned_cols=461 Identities=46% Similarity=0.735 Sum_probs=422.7
Q ss_pred cCCCCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHH
Q 005611 167 DGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 246 (688)
Q Consensus 167 ~~~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~ 246 (688)
+..++|+|+||.|++++|++|.|++.+|++|+.|+++|++.|+|+||+||||||||.||||+|+++++||+.+++++|.+
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE 382 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE 382 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH
Confidence 55677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEE
Q 005611 247 VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLA 326 (688)
Q Consensus 247 ~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIa 326 (688)
.++|.+..++|++|..|+.++|||+||||||+++..+++... ...+.+.++++||||.+||++....+|+|+|
T Consensus 383 ~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~-------~~~~~e~e~tlnQll~emDgf~~~~~vi~~a 455 (774)
T KOG0731|consen 383 MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGT-------GGGQDEREQTLNQLLVEMDGFETSKGVIVLA 455 (774)
T ss_pred HhcccchHHHHHHHHHhhccCCeEEEeccccccccccccccc-------CCCChHHHHHHHHHHHHhcCCcCCCcEEEEe
Confidence 999999999999999999999999999999999998852111 1267889999999999999999999999999
Q ss_pred ecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCC-CccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 005611 327 ATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQEAALVAVR 405 (688)
Q Consensus 327 aTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~-~~~dl~~la~~t~G~s~~dL~~lv~~A~~~A~~ 405 (688)
+||+++.||++|+||||||++|++++|+..+|.+|++.|+++.++. +++|+..+|.+|+||+|+||.++|++|+..|.+
T Consensus 456 ~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r 535 (774)
T KOG0731|consen 456 ATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAAR 535 (774)
T ss_pred ccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999985 788899999999999999999999999999999
Q ss_pred hCCccccHHHHHHHHHhhccCCCccCccccCCcchhHHHHHHHHHHHHHHhhhcccccccccceeeeeeccccCceeEEe
Q 005611 406 KGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQTLSQLVFH 485 (688)
Q Consensus 406 ~~~~~I~~~di~~Al~~~~~g~~~~~~~~~~~~~~~ia~hE~GhAvv~~~l~~~~~~~~~~v~~vsI~prg~~lg~~~~~ 485 (688)
++...|+..|+..|++|+..|.+.+...++.++++.+||||+|||+++|++++. +++.+|||+| |+++||+++.
T Consensus 536 ~~~~~i~~~~~~~a~~Rvi~G~~~~~~~~~~~~~~~~a~~eagha~~g~~l~~~-----dpl~kvsIiP-GqalG~a~~~ 609 (774)
T KOG0731|consen 536 KGLREIGTKDLEYAIERVIAGMEKKSRVLSLEEKKTVAYHEAGHAVVGWLLEHA-----DPLLKVSIIP-GQALGYAQYL 609 (774)
T ss_pred hccCccchhhHHHHHHHHhccccccchhcCHhhhhhhhhhhccchhhhcccccc-----CcceeEEecc-CCccceEEEC
Confidence 999999999999999999999999899999999999999999999999999877 9999999999 7799999999
Q ss_pred cCCCcccccCCHHHHHHHHHHHhhHHHHHHHHhC-CccCCCCcchHHHHHHHHHHHHHHhcCCccccccCCCCccccccc
Q 005611 486 RLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYG-QDTSRASVNYLADASWLARKILTIWNLENPMVIHGEPPPWRKKVK 564 (688)
Q Consensus 486 ~~~~~~~~~~t~~~l~~~i~v~LaGraAEei~fG-~~stga~~~Dl~~At~lA~~mv~~~Gm~~~~~~~~g~~~~~~~~~ 564 (688)
|.+ .++++ +++|+++|||.||||||||++|| ++|||+++ |+++||++|+.||+.|||++++ |++++....
T Consensus 610 P~~--~~l~s-k~ql~~rm~m~LGGRaAEev~fg~~iTtga~d-dl~kvT~~A~~~V~~~Gms~ki----g~~~~~~~~- 680 (774)
T KOG0731|consen 610 PTD--DYLLS-KEQLFDRMVMALGGRAAEEVVFGSEITTGAQD-DLEKVTKIARAMVASFGMSEKI----GPISFQMLL- 680 (774)
T ss_pred Ccc--ccccc-HHHHHHHHHHHhCcchhhheecCCccCchhhc-cHHHHHHHHHHHHHHcCccccc----CceeccCcc-
Confidence 973 36665 99999999999999999999997 78999987 9999999999999999999999 998874322
Q ss_pred ccCCCcccCCCccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHh
Q 005611 565 FVGPRLDFEGSLYDDYGLTEPPVNFNLDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEIDFILN 644 (688)
Q Consensus 565 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~a~~~a~~lL~~~~~~l~~la~~Lle~e~L~~~ei~~il~ 644 (688)
.|... ...|.+...-+.++.+++++++.||++|.++|++|++.++++|+.|++||+|+++|+..+++
T Consensus 681 -~~~~~------------~~~p~s~~~~~~Id~ev~~lv~~ay~~~~~ll~~n~~~l~~ia~~LLeke~l~~ee~~~ll~ 747 (774)
T KOG0731|consen 681 -PGDES------------FRKPYSEKTAQLIDTEVRRLVQKAYERTKELLRTNRDKLDKIAEVLLEKEVLTGEEIIALLG 747 (774)
T ss_pred -ccccc------------ccCccchhHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccHHHHHHHhc
Confidence 11111 12345556667778889999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccccccCCC
Q 005611 645 NYPPQTPISRLLEEENPG 662 (688)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~ 662 (688)
.+|+..+.....+++...
T Consensus 748 ~~~~~~~~~~~~~~~~~~ 765 (774)
T KOG0731|consen 748 ERPPGMPEKNVIVEQKIG 765 (774)
T ss_pred cCCCcccccchhhhhccc
Confidence 999998866666655554
No 4
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=2.9e-79 Score=697.23 Aligned_cols=459 Identities=42% Similarity=0.694 Sum_probs=407.2
Q ss_pred ccccccccccccCCCCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC
Q 005611 156 DFSRSKAEARVDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP 235 (688)
Q Consensus 156 ~~~~~~~~~~~~~~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~ 235 (688)
++++++.+........++|+||+|++++++++.+++.++++++.|..+|.+.|+++||+||||||||++|+++|++++.|
T Consensus 164 ~~~~~~~~~~~~~~~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p 243 (638)
T CHL00176 164 NFGKSKARFQMEADTGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP 243 (638)
T ss_pred ccchhHHHhhcccCCCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 44455444444556789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcC
Q 005611 236 FYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDG 315 (688)
Q Consensus 236 ~~~v~~~~~~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~ 315 (688)
++.++++++.+.+.|.+..+++.+|..|+...||||||||+|.++..++....+ .+.+.++++++++.++|+
T Consensus 244 ~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~--------~~~e~~~~L~~LL~~~dg 315 (638)
T CHL00176 244 FFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGG--------GNDEREQTLNQLLTEMDG 315 (638)
T ss_pred eeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCC--------CcHHHHHHHHHHHhhhcc
Confidence 999999999999999999999999999999999999999999999776543222 455677889999999999
Q ss_pred CCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccCHHHHHhhCCCCCHHHHHHH
Q 005611 316 FDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQL 395 (688)
Q Consensus 316 ~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~G~s~~dL~~l 395 (688)
+..+.+++||++||+++.+|++++|||||++++++++|+.++|.+||+.++++....++.++..+|+.++|||++||+++
T Consensus 316 ~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~l 395 (638)
T CHL00176 316 FKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANL 395 (638)
T ss_pred ccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHH
Confidence 98888999999999999999999999999999999999999999999999998888888899999999999999999999
Q ss_pred HHHHHHHHHHhCCccccHHHHHHHHHhhccCCCccCccccCCcchhHHHHHHHHHHHHHHhhhcccccccccceeeeeec
Q 005611 396 VQEAALVAVRKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPR 475 (688)
Q Consensus 396 v~~A~~~A~~~~~~~I~~~di~~Al~~~~~g~~~~~~~~~~~~~~~ia~hE~GhAvv~~~l~~~~~~~~~~v~~vsI~pr 475 (688)
|++|+..|.++++..|+.+|++.|++++..|.+++. ..++.+++++||||+||||++++++.. +++++|||+||
T Consensus 396 vneAal~a~r~~~~~It~~dl~~Ai~rv~~g~~~~~-~~~~~~~~~vA~hEaGhA~v~~~l~~~-----~~v~kvtI~pr 469 (638)
T CHL00176 396 LNEAAILTARRKKATITMKEIDTAIDRVIAGLEGTP-LEDSKNKRLIAYHEVGHAIVGTLLPNH-----DPVQKVTLIPR 469 (638)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHhhhccCc-cccHHHHHHHHHHhhhhHHHHhhccCC-----CceEEEEEeec
Confidence 999999999999999999999999999999987754 456778999999999999999999877 89999999999
Q ss_pred cccCceeEEecCCCcccccCCHHHHHHHHHHHhhHHHHHHHHhC--CccCCCCcchHHHHHHHHHHHHHHhcCCcccccc
Q 005611 476 GQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYG--QDTSRASVNYLADASWLARKILTIWNLENPMVIH 553 (688)
Q Consensus 476 g~~lg~~~~~~~~~~~~~~~t~~~l~~~i~v~LaGraAEei~fG--~~stga~~~Dl~~At~lA~~mv~~~Gm~~~~~~~ 553 (688)
|+++|++++.|. ++.+.++ +.+++++|+++|||||||+++|| ++|+|+++ ||++||++|+.||+.|||+. +
T Consensus 470 g~~~G~~~~~p~-~~~~~~t-~~~l~~~i~~~LgGraAE~~~fg~~~~~~Ga~~-Dl~~AT~iA~~mv~~~Gm~~-~--- 542 (638)
T CHL00176 470 GQAKGLTWFTPE-EDQSLVS-RSQILARIVGALGGRAAEEVVFGSTEVTTGASN-DLQQVTNLARQMVTRFGMSS-I--- 542 (638)
T ss_pred CCCCCceEecCC-ccccccc-HHHHHHHHHHHhhhHHHHHHhcCCCCcCCCchh-HHHHHHHHHHHHHHHhCCCc-C---
Confidence 999999999886 4455555 99999999999999999999999 46899886 99999999999999999995 7
Q ss_pred CCCCcccccc---cccCCCcccCCCccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005611 554 GEPPPWRKKV---KFVGPRLDFEGSLYDDYGLTEPPVNFNLDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLN 630 (688)
Q Consensus 554 ~g~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~a~~~a~~lL~~~~~~l~~la~~Lle 630 (688)
||+++.... .|+|+.+.. ....+....+.++.+|+++|++||++|+++|++||++|++||++|+|
T Consensus 543 -g~~~~~~~~~~~~~~~~~~~~-----------~~~~s~~~~~~iD~ev~~~l~~~~~~a~~iL~~~~~~l~~la~~Lle 610 (638)
T CHL00176 543 -GPISLESNNSTDPFLGRFMQR-----------NSEYSEEIADKIDMEVRSILHTCYQYAYQILKDNRVLIDLLVELLLQ 610 (638)
T ss_pred -CceeecCCCCccccccccccc-----------ccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 898886432 455543210 01112223345567789999999999999999999999999999999
Q ss_pred hcccCHHHHHHHHhcCC
Q 005611 631 QKEIGREEIDFILNNYP 647 (688)
Q Consensus 631 ~e~L~~~ei~~il~~~~ 647 (688)
+|+|+++||++|++.++
T Consensus 611 ~Etl~~~ei~~il~~~~ 627 (638)
T CHL00176 611 KETIDGDEFREIVNSYT 627 (638)
T ss_pred hCccCHHHHHHHHhhcC
Confidence 99999999999998764
No 5
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=2e-76 Score=681.59 Aligned_cols=446 Identities=40% Similarity=0.684 Sum_probs=405.4
Q ss_pred cCCCCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHH
Q 005611 167 DGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 246 (688)
Q Consensus 167 ~~~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~ 246 (688)
+.....+|+|+.|++..++++.+++.+++.+..+..++.+.|+|++|+||||||||+++++++++++.||+.++++++.+
T Consensus 144 ~~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~ 223 (644)
T PRK10733 144 EDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 223 (644)
T ss_pred chhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHH
Confidence 34456789999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEE
Q 005611 247 VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLA 326 (688)
Q Consensus 247 ~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIa 326 (688)
.+.|.+..+++..|..|+...||||||||+|+++.+++....+ .+.+..++++++|.+||++..+.+++||+
T Consensus 224 ~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g--------~~~~~~~~ln~lL~~mdg~~~~~~vivIa 295 (644)
T PRK10733 224 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGG--------GHDEREQTLNQMLVEMDGFEGNEGIIVIA 295 (644)
T ss_pred hhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCC--------CchHHHHHHHHHHHhhhcccCCCCeeEEE
Confidence 9999999999999999999999999999999999887653322 34566789999999999999889999999
Q ss_pred ecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 005611 327 ATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRK 406 (688)
Q Consensus 327 aTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~G~s~~dL~~lv~~A~~~A~~~ 406 (688)
|||+|+.+|++++||||||+++++++|+.++|.+||+.++++.++..++|+..+++.+.|||++||.++|++|+..|.++
T Consensus 296 aTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~ 375 (644)
T PRK10733 296 ATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG 375 (644)
T ss_pred ecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred CCccccHHHHHHHHHhhccCCCccCccccCCcchhHHHHHHHHHHHHHHhhhcccccccccceeeeeeccccCceeEEec
Q 005611 407 GHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQTLSQLVFHR 486 (688)
Q Consensus 407 ~~~~I~~~di~~Al~~~~~g~~~~~~~~~~~~~~~ia~hE~GhAvv~~~l~~~~~~~~~~v~~vsI~prg~~lg~~~~~~ 486 (688)
++..|+.+|++.|++++..+++++...+++.+++++||||+|||+++++++.. +++++|||+|||.++|++++.|
T Consensus 376 ~~~~i~~~d~~~a~~~v~~g~~~~~~~~~~~~~~~~a~he~gha~~~~~~~~~-----~~~~~v~i~prg~~~g~~~~~~ 450 (644)
T PRK10733 376 NKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEH-----DPVHKVTIIPRGRALGVTFFLP 450 (644)
T ss_pred CCCcccHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHccCC-----CceeEEEEeccCCCcceeEECC
Confidence 99999999999999999999887777788889999999999999999999877 8899999999999999999988
Q ss_pred CCCcccccCCHHHHHHHHHHHhhHHHHHHHHhC--CccCCCCcchHHHHHHHHHHHHHHhcCCccccccCCCCcccccc-
Q 005611 487 LDDESYMFERRPQLLHRLQVLLGGRAAEEVIYG--QDTSRASVNYLADASWLARKILTIWNLENPMVIHGEPPPWRKKV- 563 (688)
Q Consensus 487 ~~~~~~~~~t~~~l~~~i~v~LaGraAEei~fG--~~stga~~~Dl~~At~lA~~mv~~~Gm~~~~~~~~g~~~~~~~~- 563 (688)
. ++.+.+ ||.+|+++|+++|||||||+++|| ++|||+++ ||++||++|+.||+.||||+++ ||+.|....
T Consensus 451 ~-~~~~~~-~~~~l~~~i~~~lgGraAE~~~~g~~~~ttGa~~-Dl~~AT~lA~~mv~~~Gms~~l----g~~~~~~~~~ 523 (644)
T PRK10733 451 E-GDAISA-SRQKLESQISTLYGGRLAEEIIYGPEHVSTGASN-DIKVATNLARNMVTQWGFSEKL----GPLLYAEEEG 523 (644)
T ss_pred C-cccccc-cHHHHHHHHHHHHhhHHHHHHHhCCCCCCCCcHH-HHHHHHHHHHHHHHHhCCCccc----cchhhccccc
Confidence 6 344444 499999999999999999999998 57889876 9999999999999999999999 999886543
Q ss_pred -cccCCCcccCCCccCCCCCCCCCCCCCCcHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHH
Q 005611 564 -KFVGPRLDFEGSLYDDYGLTEPPVNFNLDDD----IAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREE 638 (688)
Q Consensus 564 -~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~ll~~a~~~a~~lL~~~~~~l~~la~~Lle~e~L~~~e 638 (688)
.|+|++.. ..+.+|++ ++++|+++|+++|++|+++|++||+.|++||++|+|+|||+++|
T Consensus 524 ~~~lg~~~~---------------~~~~~s~~~~~~id~ev~~il~~~~~~a~~iL~~~~~~l~~la~~Lle~etl~~~e 588 (644)
T PRK10733 524 EVFLGRSVA---------------KAKHMSDETARIIDQEVKALIERNYNRARQLLTDNMDILHAMKDALMKYETIDAPQ 588 (644)
T ss_pred ccccccccc---------------cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhceeCHHH
Confidence 56665431 22445554 46788999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC
Q 005611 639 IDFILNNYP 647 (688)
Q Consensus 639 i~~il~~~~ 647 (688)
|+++++.+.
T Consensus 589 i~~i~~~~~ 597 (644)
T PRK10733 589 IDDLMARRD 597 (644)
T ss_pred HHHHHhcCC
Confidence 999998753
No 6
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=8.1e-76 Score=661.87 Aligned_cols=459 Identities=44% Similarity=0.745 Sum_probs=409.8
Q ss_pred cccccccccccccCCCCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCC
Q 005611 155 IDFSRSKAEARVDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV 234 (688)
Q Consensus 155 ~~~~~~~~~~~~~~~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~ 234 (688)
..+.+++.+......++++|+||+|++++++++++++.++++++.|..+|.++|+++||+||||||||++++++|++++.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~ 114 (495)
T TIGR01241 35 FSFGKSKAKLLNEEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV 114 (495)
T ss_pred cCCCCCccccccCCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC
Confidence 44556666666677889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEeeCchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhc
Q 005611 235 PFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD 314 (688)
Q Consensus 235 ~~~~v~~~~~~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld 314 (688)
|++.++++++.+.+.|.+.+.++..|+.|+...||||||||+|.++.+++....+ .+.+...++++++.++|
T Consensus 115 ~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~--------~~~~~~~~~~~lL~~~d 186 (495)
T TIGR01241 115 PFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGG--------GNDEREQTLNQLLVEMD 186 (495)
T ss_pred CeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCC--------ccHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999877543221 34556788999999999
Q ss_pred CCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccCHHHHHhhCCCCCHHHHHH
Q 005611 315 GFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQ 394 (688)
Q Consensus 315 ~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~G~s~~dL~~ 394 (688)
++.++.+++||+|||+|+.+|++++|||||++.|++++|+.++|.+|++.++++.+...+.++..++..+.|||++||.+
T Consensus 187 ~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~ 266 (495)
T TIGR01241 187 GFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLAN 266 (495)
T ss_pred cccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHH
Confidence 99888899999999999999999999999999999999999999999999999888778889999999999999999999
Q ss_pred HHHHHHHHHHHhCCccccHHHHHHHHHhhccCCCccCccccCCcchhHHHHHHHHHHHHHHhhhcccccccccceeeeee
Q 005611 395 LVQEAALVAVRKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVP 474 (688)
Q Consensus 395 lv~~A~~~A~~~~~~~I~~~di~~Al~~~~~g~~~~~~~~~~~~~~~ia~hE~GhAvv~~~l~~~~~~~~~~v~~vsI~p 474 (688)
+|++|+..|.++++..|+.+|+..|++++..+++.+...+++.+++++|+||+|||+++++++.. +++.++||.|
T Consensus 267 l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEaGhAlv~~~l~~~-----~~v~~vsi~p 341 (495)
T TIGR01241 267 LLNEAALLAARKNKTEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEAGHALVGLLLKDA-----DPVHKVTIIP 341 (495)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHhHHHHHHhcCCC-----CceEEEEEee
Confidence 99999999999898999999999999999999877777788899999999999999999999866 7899999999
Q ss_pred ccccCceeEEecCCCcccccCCHHHHHHHHHHHhhHHHHHHHHhCCccCCCCcchHHHHHHHHHHHHHHhcCCccccccC
Q 005611 475 RGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRASVNYLADASWLARKILTIWNLENPMVIHG 554 (688)
Q Consensus 475 rg~~lg~~~~~~~~~~~~~~~t~~~l~~~i~v~LaGraAEei~fG~~stga~~~Dl~~At~lA~~mv~~~Gm~~~~~~~~ 554 (688)
||+++|++.+.+. ++.+.. |+++++++|+|+|||||||+++||++|+|+++ ||++||++|+.||..|||++++
T Consensus 342 rg~~~G~~~~~~~-~~~~~~-t~~~l~~~i~v~LaGraAE~~~~G~~s~Ga~~-Dl~~At~lA~~mv~~~Gm~~~~---- 414 (495)
T TIGR01241 342 RGQALGYTQFLPE-EDKYLY-TKSQLLAQIAVLLGGRAAEEIIFGEVTTGASN-DIKQATNIARAMVTEWGMSDKL---- 414 (495)
T ss_pred cCCccceEEecCc-cccccC-CHHHHHHHHHHHhhHHHHHHHHhcCCCCCchH-HHHHHHHHHHHHHHHhCCCccc----
Confidence 9999999988775 334444 59999999999999999999999999999986 9999999999999999999988
Q ss_pred CCCcccccc--cccCCCcccCCCccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Q 005611 555 EPPPWRKKV--KFVGPRLDFEGSLYDDYGLTEPPVNFNLDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQK 632 (688)
Q Consensus 555 g~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~a~~~a~~lL~~~~~~l~~la~~Lle~e 632 (688)
|++++.... .++|+++.. ..+.+....+.++++++++|+++|++|+++|++||+++++||++|+++|
T Consensus 415 g~~~~~~~~~~~~l~~~~~~-----------~~~~s~~~~~~id~~v~~lL~~a~~ra~~lL~~~~~~l~~la~~Ll~~e 483 (495)
T TIGR01241 415 GPVAYGSDGGDVFLGRGFAK-----------AKEYSEETAREIDEEVKRIIEEAYKRAKQILTENRDELELLAKALLEKE 483 (495)
T ss_pred CceeeccCcccccccccccc-----------ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence 888876543 454443210 1122333344566788999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHh
Q 005611 633 EIGREEIDFILN 644 (688)
Q Consensus 633 ~L~~~ei~~il~ 644 (688)
+|+++||++|++
T Consensus 484 ~L~~~ei~~il~ 495 (495)
T TIGR01241 484 TITREEIKELLA 495 (495)
T ss_pred eeCHHHHHHHhC
Confidence 999999999974
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-54 Score=444.92 Aligned_cols=254 Identities=45% Similarity=0.780 Sum_probs=245.4
Q ss_pred ccCCCCcccccccccHHHHHHHHHHHHH-hcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchh
Q 005611 166 VDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 244 (688)
Q Consensus 166 ~~~~~~v~f~dV~G~~~~k~~L~~ii~~-l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~ 244 (688)
++..|+++|+||.|+++++++|++.+.. +++|+.|..+|++||+|||||||||||||+||||+|++.++.|+.+.++++
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 3667999999999999999999999997 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEE
Q 005611 245 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF 324 (688)
Q Consensus 245 ~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viV 324 (688)
..+|+|+|.+-+|++|+.|+.++||||||||||+++.+|.....+ .+.+.++++.+||.+||||.+..+|-|
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~--------gDrEVQRTmleLL~qlDGFD~~~nvKV 293 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTS--------GDREVQRTMLELLNQLDGFDPRGNVKV 293 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCC--------chHHHHHHHHHHHHhccCCCCCCCeEE
Confidence 999999999999999999999999999999999999998765444 778999999999999999999999999
Q ss_pred EEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 005611 325 LAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAV 404 (688)
Q Consensus 325 IaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~G~s~~dL~~lv~~A~~~A~ 404 (688)
|+|||+++.|||||+|||||||.|+||+||.+.|.+||+.|.+++++.+++|++.+|+.++|+||+||.++|.+|...|.
T Consensus 294 I~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~Ai 373 (406)
T COG1222 294 IMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAI 373 (406)
T ss_pred EEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCccccHHHHHHHHHhhccCC
Q 005611 405 RKGHESILSSDMDDAVDRLTVGP 427 (688)
Q Consensus 405 ~~~~~~I~~~di~~Al~~~~~g~ 427 (688)
|+.+..++++||.+|++++....
T Consensus 374 R~~R~~Vt~~DF~~Av~KV~~~~ 396 (406)
T COG1222 374 RERRDEVTMEDFLKAVEKVVKKK 396 (406)
T ss_pred HhccCeecHHHHHHHHHHHHhcc
Confidence 99999999999999999998754
No 8
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=2.9e-50 Score=477.96 Aligned_cols=307 Identities=19% Similarity=0.251 Sum_probs=259.5
Q ss_pred hccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHHHH--------------------------------
Q 005611 201 DKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVL-------------------------------- 248 (688)
Q Consensus 201 ~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~~~-------------------------------- 248 (688)
.++|+++|+||||+||||||||+|||++|+++++||+.++++++.+.+
T Consensus 1623 lrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~ 1702 (2281)
T CHL00206 1623 LRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELL 1702 (2281)
T ss_pred HHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhh
Confidence 467889999999999999999999999999999999999999998643
Q ss_pred ---------hh--hhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCC
Q 005611 249 ---------VG--VGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD 317 (688)
Q Consensus 249 ---------~g--~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~ 317 (688)
.+ ++..+++.+|+.|+..+||||||||||+++.+.. ...++++|+.+|++..
T Consensus 1703 e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds-----------------~~ltL~qLLneLDg~~ 1765 (2281)
T CHL00206 1703 TMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES-----------------NYLSLGLLVNSLSRDC 1765 (2281)
T ss_pred hhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc-----------------ceehHHHHHHHhcccc
Confidence 12 2334589999999999999999999999986521 1235789999999763
Q ss_pred ---CCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHh--ccCcCCC-ccCHHHHHhhCCCCCHHH
Q 005611 318 ---TGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHA--SKVKMSD-SVDLSSYAKNLPGWTGAR 391 (688)
Q Consensus 318 ---~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l--~~~~~~~-~~dl~~la~~t~G~s~~d 391 (688)
..++|+||||||+|+.|||||+||||||+.|+++.|+..+|++++..++ ++..+.. .+|+..+|+.|+||||||
T Consensus 1766 ~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGAD 1845 (2281)
T CHL00206 1766 ERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARD 1845 (2281)
T ss_pred ccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHH
Confidence 4568999999999999999999999999999999999999999988653 4444543 368999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCccccHHHHHHHHHhhccCCCccCccccCCcchhHHHHHHHHHHHHHHhhhcccccccccceee
Q 005611 392 LAQLVQEAALVAVRKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRIS 471 (688)
Q Consensus 392 L~~lv~~A~~~A~~~~~~~I~~~di~~Al~~~~~g~~~~~~~~~~~~~~~ia~hE~GhAvv~~~l~~~~~~~~~~v~~vs 471 (688)
|+++|++|+..|.++++..|+.++++.|++|+..|.+.+.. + ...+.+++||+||||+++++... +++++||
T Consensus 1846 LanLvNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~~~~~~--~-~~~~~ia~yEiGhAvvq~~L~~~-----~pv~kIS 1917 (2281)
T CHL00206 1846 LVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVR--S-VQDHGILFYQIGRAVAQNVLLSN-----CPIDPIS 1917 (2281)
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhhhhhccc--C-cchhhhhhhHHhHHHHHHhccCC-----CCcceEE
Confidence 99999999999999999999999999999999999875432 2 23345799999999999999877 8999999
Q ss_pred eeec------cccCceeEEecCCCcccccCCHHHHHHHHHHHhhHHHHHHHHhCCccCCCCcchHHHHHHHHHHHHHHhc
Q 005611 472 IVPR------GQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRASVNYLADASWLARKILTIWN 545 (688)
Q Consensus 472 I~pr------g~~lg~~~~~~~~~~~~~~~t~~~l~~~i~v~LaGraAEei~fG~~stga~~~Dl~~At~lA~~mv~~~G 545 (688)
|.++ |.++|++++.|. + ..++ +.+++.+|++||||||||++||+..+ .|+.||+.||
T Consensus 1918 Iy~~~~~~r~~~~yl~~wyle~--~-~~mk-k~tiL~~Il~cLAGraAedlwf~~~~-------------~~~n~It~yg 1980 (2281)
T CHL00206 1918 IYMKKKSCKEGDSYLYKWYFEL--G-TSMK-KLTILLYLLSCSAGSVAQDLWSLPGP-------------DEKNGITSYG 1980 (2281)
T ss_pred EecCCccccCcccceeEeecCC--c-ccCC-HHHHHHHHHHHhhhhhhhhhccCcch-------------hhhcCccccc
Confidence 9532 467799998875 2 4454 99999999999999999999996544 3567777777
Q ss_pred CCcc
Q 005611 546 LENP 549 (688)
Q Consensus 546 m~~~ 549 (688)
|.+.
T Consensus 1981 ~vEn 1984 (2281)
T CHL00206 1981 LVEN 1984 (2281)
T ss_pred chhh
Confidence 7776
No 9
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-47 Score=416.85 Aligned_cols=251 Identities=44% Similarity=0.733 Sum_probs=236.7
Q ss_pred cccCCCCcccccccccHHHHHHHHHHHHH-hcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCch
Q 005611 165 RVDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 243 (688)
Q Consensus 165 ~~~~~~~v~f~dV~G~~~~k~~L~~ii~~-l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~ 243 (688)
...+.++++|+||.|+++.|.+|++.+.| +++|+.|.++|+.+|+|||||||||||||++||++|++++++|+.+.+++
T Consensus 424 ~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpE 503 (693)
T KOG0730|consen 424 ILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPE 503 (693)
T ss_pred eeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHH
Confidence 33566899999999999999999999988 99999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEE
Q 005611 244 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 323 (688)
Q Consensus 244 ~~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~vi 323 (688)
++++|+|+++..+|..|.+|+...|||||+||||+++..|++.. .....+.+++||++|||+...++|+
T Consensus 504 L~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~-----------~~v~~RVlsqLLtEmDG~e~~k~V~ 572 (693)
T KOG0730|consen 504 LFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSS-----------SGVTDRVLSQLLTEMDGLEALKNVL 572 (693)
T ss_pred HHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCc-----------cchHHHHHHHHHHHcccccccCcEE
Confidence 99999999999999999999999999999999999999986432 2456788999999999999999999
Q ss_pred EEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 005611 324 FLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVA 403 (688)
Q Consensus 324 VIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~G~s~~dL~~lv~~A~~~A 403 (688)
|||+||+|+.||++++||||||+.|+||+||.+.|.+||+.+++++++.+++|+.+||+.|.||||+||.++|++|+..|
T Consensus 573 ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a 652 (693)
T KOG0730|consen 573 VIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLA 652 (693)
T ss_pred EEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCC--ccccHHHHHHHHHhhccC
Q 005611 404 VRKGH--ESILSSDMDDAVDRLTVG 426 (688)
Q Consensus 404 ~~~~~--~~I~~~di~~Al~~~~~g 426 (688)
.++.- ..|+.+||.+|+..+...
T Consensus 653 ~~e~i~a~~i~~~hf~~al~~~r~s 677 (693)
T KOG0730|consen 653 LRESIEATEITWQHFEEALKAVRPS 677 (693)
T ss_pred HHHhcccccccHHHHHHHHHhhccc
Confidence 98854 479999999999877543
No 10
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-45 Score=396.67 Aligned_cols=249 Identities=43% Similarity=0.720 Sum_probs=230.8
Q ss_pred cCCCCcccccccccHHHHHHHHHHHHH-hcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhH
Q 005611 167 DGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 245 (688)
Q Consensus 167 ~~~~~v~f~dV~G~~~~k~~L~~ii~~-l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~ 245 (688)
..-|+++|+||.|+++++.+|...+.+ +++|+.|+.+|+..|.|||||||||||||.||||+|++++.+|+.+.++++.
T Consensus 503 ~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELl 582 (802)
T KOG0733|consen 503 ATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELL 582 (802)
T ss_pred eecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHH
Confidence 445899999999999999999987776 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEE
Q 005611 246 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 325 (688)
Q Consensus 246 ~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVI 325 (688)
++|+|+++..+|..|.+|+.++|||||+||+|++.++|+.. ......+.+|+||.+|||+..+.+|.||
T Consensus 583 NkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~-----------~s~~s~RvvNqLLtElDGl~~R~gV~vi 651 (802)
T KOG0733|consen 583 NKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDE-----------GSSVSSRVVNQLLTELDGLEERRGVYVI 651 (802)
T ss_pred HHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCC-----------CchhHHHHHHHHHHHhcccccccceEEE
Confidence 99999999999999999999999999999999999998753 2344578899999999999999999999
Q ss_pred EecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhc--cCcCCCccCHHHHHhhCC--CCCHHHHHHHHHHHHH
Q 005611 326 AATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHAS--KVKMSDSVDLSSYAKNLP--GWTGARLAQLVQEAAL 401 (688)
Q Consensus 326 aaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~--~~~~~~~~dl~~la~~t~--G~s~~dL~~lv~~A~~ 401 (688)
||||+||.+||+++||||||+.+++++|+.++|.+||+.+.+ +.++.+++|++.||+.+. ||||+||..||++|..
T Consensus 652 aATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi 731 (802)
T KOG0733|consen 652 AATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASI 731 (802)
T ss_pred eecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998 778899999999999876 9999999999999999
Q ss_pred HHHHhCC----------------ccccHHHHHHHHHhhccC
Q 005611 402 VAVRKGH----------------ESILSSDMDDAVDRLTVG 426 (688)
Q Consensus 402 ~A~~~~~----------------~~I~~~di~~Al~~~~~g 426 (688)
.|.++.- -.++..||++|+.++...
T Consensus 732 ~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pS 772 (802)
T KOG0733|consen 732 LALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPS 772 (802)
T ss_pred HHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCC
Confidence 9987510 136778999999988654
No 11
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-43 Score=340.32 Aligned_cols=252 Identities=41% Similarity=0.692 Sum_probs=240.5
Q ss_pred ccCCCCcccccccccHHHHHHHHHHHHH-hcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchh
Q 005611 166 VDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 244 (688)
Q Consensus 166 ~~~~~~v~f~dV~G~~~~k~~L~~ii~~-l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~ 244 (688)
..+++++++.||.|++-.|+++++.++. +.+.+.|++.|+.||+|+|+|||||||||+|++++|+.....|+.+.+++|
T Consensus 146 ~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsef 225 (408)
T KOG0727|consen 146 PDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF 225 (408)
T ss_pred CCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHH
Confidence 3567899999999999999999999997 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEE
Q 005611 245 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF 324 (688)
Q Consensus 245 ~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viV 324 (688)
..+|.|+|..-+|+.|+.|+.++|+||||||+|++..+|-....+ .+.+.++.+-+||..||+|....+|-|
T Consensus 226 vqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtg--------adrevqril~ellnqmdgfdq~~nvkv 297 (408)
T KOG0727|consen 226 VQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTG--------ADREVQRILIELLNQMDGFDQTTNVKV 297 (408)
T ss_pred HHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhcccccc--------ccHHHHHHHHHHHHhccCcCcccceEE
Confidence 999999999999999999999999999999999999988654444 677889999999999999999999999
Q ss_pred EEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 005611 325 LAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAV 404 (688)
Q Consensus 325 IaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~G~s~~dL~~lv~~A~~~A~ 404 (688)
|.+||+.+.|||+|+||||+|+.|+||+||..+++-++.....++++++++|++.+..+-+..|++||..+|++|...|.
T Consensus 298 imatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~av 377 (408)
T KOG0727|consen 298 IMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAV 377 (408)
T ss_pred EEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCccccHHHHHHHHHhhcc
Q 005611 405 RKGHESILSSDMDDAVDRLTV 425 (688)
Q Consensus 405 ~~~~~~I~~~di~~Al~~~~~ 425 (688)
++++-.+...||++|......
T Consensus 378 r~nryvvl~kd~e~ay~~~vk 398 (408)
T KOG0727|consen 378 RENRYVVLQKDFEKAYKTVVK 398 (408)
T ss_pred HhcceeeeHHHHHHHHHhhcC
Confidence 999999999999999987653
No 12
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-43 Score=377.60 Aligned_cols=228 Identities=44% Similarity=0.789 Sum_probs=216.8
Q ss_pred CCCCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHHH
Q 005611 168 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV 247 (688)
Q Consensus 168 ~~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~~ 247 (688)
..++++|+|+.|++....+|.+++..+++|+.|..+|+.||+|+|||||||||||+||+++|+++++||+.++++++++.
T Consensus 183 ~~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSG 262 (802)
T KOG0733|consen 183 PESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSG 262 (802)
T ss_pred CCCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcc
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCC----CcEE
Q 005611 248 LVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTG----KGVI 323 (688)
Q Consensus 248 ~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~----~~vi 323 (688)
+.|++++++|++|..|....|||+||||||++.++|... ..+..++.+.+||..||++... ..|+
T Consensus 263 vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~a-----------qreMErRiVaQLlt~mD~l~~~~~~g~~Vl 331 (802)
T KOG0733|consen 263 VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEA-----------QREMERRIVAQLLTSMDELSNEKTKGDPVL 331 (802)
T ss_pred cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhH-----------HHHHHHHHHHHHHHhhhcccccccCCCCeE
Confidence 999999999999999999999999999999999999762 4455678889999999998543 6799
Q ss_pred EEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 005611 324 FLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVA 403 (688)
Q Consensus 324 VIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~G~s~~dL~~lv~~A~~~A 403 (688)
||+|||+||.|||+|+|+||||+.|.+..|+..+|.+||+..++++.++.++|+.+||..|+||.|+||.++|.+|+..|
T Consensus 332 VIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vA 411 (802)
T KOG0733|consen 332 VIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVA 411 (802)
T ss_pred EEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHh
Q 005611 404 VRK 406 (688)
Q Consensus 404 ~~~ 406 (688)
++|
T Consensus 412 ikR 414 (802)
T KOG0733|consen 412 IKR 414 (802)
T ss_pred HHH
Confidence 876
No 13
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-42 Score=338.69 Aligned_cols=252 Identities=39% Similarity=0.704 Sum_probs=241.5
Q ss_pred cCCCCcccccccccHHHHHHHHHHHHH-hcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhH
Q 005611 167 DGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 245 (688)
Q Consensus 167 ~~~~~v~f~dV~G~~~~k~~L~~ii~~-l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~ 245 (688)
+.-|+-+++-|.|.+.++++++++++. .++|+.|..+|+..|+|+|||||||||||.||+++|....+.|+.++++++.
T Consensus 139 eKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselv 218 (404)
T KOG0728|consen 139 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 218 (404)
T ss_pred hhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHH
Confidence 345778899999999999999999997 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEE
Q 005611 246 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 325 (688)
Q Consensus 246 ~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVI 325 (688)
.+|.|++..-+|++|-.|+.++|+|||.||||+++..|.++..+ .+.+.++++-+||..+|+|...+++-||
T Consensus 219 qk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~g--------gdsevqrtmlellnqldgfeatknikvi 290 (404)
T KOG0728|consen 219 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSG--------GDSEVQRTMLELLNQLDGFEATKNIKVI 290 (404)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCC--------ccHHHHHHHHHHHHhccccccccceEEE
Confidence 99999999999999999999999999999999999998776655 6788899999999999999999999999
Q ss_pred EecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 005611 326 AATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVR 405 (688)
Q Consensus 326 aaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~G~s~~dL~~lv~~A~~~A~~ 405 (688)
.+||+.+.|||+|+||||+|+.|+||+|+.+.|.+|++.|.+++++...+++..+|...+|.||+++..+|.+|...|.+
T Consensus 291 matnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alr 370 (404)
T KOG0728|consen 291 MATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALR 370 (404)
T ss_pred EeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCccccHHHHHHHHHhhccC
Q 005611 406 KGHESILSSDMDDAVDRLTVG 426 (688)
Q Consensus 406 ~~~~~I~~~di~~Al~~~~~g 426 (688)
+.+-.+|++||+-|+.++...
T Consensus 371 errvhvtqedfemav~kvm~k 391 (404)
T KOG0728|consen 371 ERRVHVTQEDFEMAVAKVMQK 391 (404)
T ss_pred HhhccccHHHHHHHHHHHHhc
Confidence 999999999999999988753
No 14
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-42 Score=339.94 Aligned_cols=252 Identities=40% Similarity=0.710 Sum_probs=239.0
Q ss_pred ccCCCCcccccccccHHHHHHHHHHHHH-hcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchh
Q 005611 166 VDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 244 (688)
Q Consensus 166 ~~~~~~v~f~dV~G~~~~k~~L~~ii~~-l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~ 244 (688)
++.+|+-+++||.|++.++++|.+.+-. +.+++.|.++|++||+|+|+|||||||||++|++.|...+..|+...++++
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQL 241 (424)
T KOG0652|consen 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQL 241 (424)
T ss_pred eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHH
Confidence 3667888999999999999999987775 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEE
Q 005611 245 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF 324 (688)
Q Consensus 245 ~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viV 324 (688)
..+|.|.|.+-+|++|+.|+.++|+||||||+|+++.+|..... ..+.+.++++-+||..+|+|.++..+-|
T Consensus 242 VQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek--------~GDREVQRTMLELLNQLDGFss~~~vKv 313 (424)
T KOG0652|consen 242 VQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEK--------AGDREVQRTMLELLNQLDGFSSDDRVKV 313 (424)
T ss_pred HhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccc--------cccHHHHHHHHHHHHhhcCCCCccceEE
Confidence 99999999999999999999999999999999999988854322 2678889999999999999999999999
Q ss_pred EEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 005611 325 LAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAV 404 (688)
Q Consensus 325 IaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~G~s~~dL~~lv~~A~~~A~ 404 (688)
||+||+.+.|||+|+|+||+|+.|+||.|+.+.|.+|++.|.++++..++++++++|+.|++|+|+++..+|-+|...|.
T Consensus 314 iAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiAL 393 (424)
T KOG0652|consen 314 IAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIAL 393 (424)
T ss_pred EeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCccccHHHHHHHHHhhcc
Q 005611 405 RKGHESILSSDMDDAVDRLTV 425 (688)
Q Consensus 405 ~~~~~~I~~~di~~Al~~~~~ 425 (688)
|++...++.+||.+++-.+..
T Consensus 394 Rr~atev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 394 RRGATEVTHEDFMEGILEVQA 414 (424)
T ss_pred hcccccccHHHHHHHHHHHHH
Confidence 999999999999999877654
No 15
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-42 Score=336.00 Aligned_cols=256 Identities=41% Similarity=0.672 Sum_probs=242.5
Q ss_pred ccCCCCcccccccccHHHHHHHHHHHHH-hcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchh
Q 005611 166 VDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 244 (688)
Q Consensus 166 ~~~~~~v~f~dV~G~~~~k~~L~~ii~~-l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~ 244 (688)
++++++++++||.|+.+.++.|+++++. +.+|+.|-.+|+.||+|+|+|||||||||.+|+++|+..+..|+.+-++++
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigsel 247 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL 247 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH
Confidence 4678999999999999999999999997 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEE
Q 005611 245 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF 324 (688)
Q Consensus 245 ~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viV 324 (688)
..+|+|++..-+|++|+.|+.+..||||+||+|++++.|-.+..+ .+.+.++++-+++..+|+|..+.++-|
T Consensus 248 vqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~g--------gdnevqrtmleli~qldgfdprgnikv 319 (435)
T KOG0729|consen 248 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAG--------GDNEVQRTMLELINQLDGFDPRGNIKV 319 (435)
T ss_pred HHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCC--------CcHHHHHHHHHHHHhccCCCCCCCeEE
Confidence 999999999999999999999999999999999999887543333 566788899999999999999999999
Q ss_pred EEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 005611 325 LAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAV 404 (688)
Q Consensus 325 IaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~G~s~~dL~~lv~~A~~~A~ 404 (688)
+.+||+|+.|||+|+||||+|+.++|.+||.+.|..||+.|.+.+....++.++-+|+.++.-+|++|+.+|.+|...|.
T Consensus 320 lmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfai 399 (435)
T KOG0729|consen 320 LMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAI 399 (435)
T ss_pred EeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCccccHHHHHHHHHhhccCCCc
Q 005611 405 RKGHESILSSDMDDAVDRLTVGPKR 429 (688)
Q Consensus 405 ~~~~~~I~~~di~~Al~~~~~g~~~ 429 (688)
+..+...|..||.+|++++..|-.+
T Consensus 400 rarrk~atekdfl~av~kvvkgy~k 424 (435)
T KOG0729|consen 400 RARRKVATEKDFLDAVNKVVKGYAK 424 (435)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999877554
No 16
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-42 Score=341.48 Aligned_cols=253 Identities=37% Similarity=0.675 Sum_probs=240.6
Q ss_pred cCCCCcccccccccHHHHHHHHHHHHH-hcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhH
Q 005611 167 DGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 245 (688)
Q Consensus 167 ~~~~~v~f~dV~G~~~~k~~L~~ii~~-l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~ 245 (688)
+..|.-+|.|+.|++.+++++++.++. +.+|+.|..+|++||+||+|||+||||||.||+|+|+.....|+.+-+++++
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 456788999999999999999999997 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEE
Q 005611 246 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 325 (688)
Q Consensus 246 ~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVI 325 (688)
.+|.|.+.+-+|.+|.-|..++|+|+||||||+++.+|-....+ ...+.++++-+||..+|+|.++..|-||
T Consensus 257 QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~Sg--------gerEiQrtmLELLNQldGFdsrgDvKvi 328 (440)
T KOG0726|consen 257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSG--------GEREIQRTMLELLNQLDGFDSRGDVKVI 328 (440)
T ss_pred HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCc--------cHHHHHHHHHHHHHhccCccccCCeEEE
Confidence 99999999999999999999999999999999999988554333 5677888999999999999999999999
Q ss_pred EecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 005611 326 AATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVR 405 (688)
Q Consensus 326 aaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~G~s~~dL~~lv~~A~~~A~~ 405 (688)
.+||+.+.|||+|+||||+|+.|+|+.||...++.||..|..++.+..+++++.+...-..+||+||.++|.+|...|.|
T Consensus 329 mATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlR 408 (440)
T KOG0726|consen 329 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALR 408 (440)
T ss_pred EecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCccccHHHHHHHHHhhccCC
Q 005611 406 KGHESILSSDMDDAVDRLTVGP 427 (688)
Q Consensus 406 ~~~~~I~~~di~~Al~~~~~g~ 427 (688)
+.+..++.+||..|.+++....
T Consensus 409 erRm~vt~~DF~ka~e~V~~~K 430 (440)
T KOG0726|consen 409 ERRMKVTMEDFKKAKEKVLYKK 430 (440)
T ss_pred HHHhhccHHHHHHHHHHHHHhc
Confidence 9999999999999999988654
No 17
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=7e-41 Score=328.66 Aligned_cols=241 Identities=37% Similarity=0.633 Sum_probs=223.5
Q ss_pred cCCCCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHH
Q 005611 167 DGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 246 (688)
Q Consensus 167 ~~~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~ 246 (688)
...++++|+||+|++++|...+-++.++++|+.|..+ .|++||+|||||||||++|+++|++++.|++.+...+++.
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liG 189 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIG 189 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHH
Confidence 3457899999999999999999999999999976554 6899999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEE
Q 005611 247 VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLA 326 (688)
Q Consensus 247 ~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIa 326 (688)
.++|.+..+++.++.+|+..+|||+||||+|+++-.|. +..........+|.||.+||+...+.+|+.||
T Consensus 190 ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRr----------yQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 190 EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRR----------YQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhh----------HHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 99999999999999999999999999999999986552 11233345567899999999999999999999
Q ss_pred ecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccCHHHHHhhCCCCCHHHHH-HHHHHHHHHHHH
Q 005611 327 ATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLA-QLVQEAALVAVR 405 (688)
Q Consensus 327 aTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~G~s~~dL~-~lv~~A~~~A~~ 405 (688)
+||+|+.||+++++ ||...|+|.+|+.++|.+|++.++++.++.-+.++..+++.+.|+||+||. .+++.|...|..
T Consensus 260 aTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ 337 (368)
T COG1223 260 ATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIA 337 (368)
T ss_pred ecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999999999999999999999999999999987 688999999999
Q ss_pred hCCccccHHHHHHHHHh
Q 005611 406 KGHESILSSDMDDAVDR 422 (688)
Q Consensus 406 ~~~~~I~~~di~~Al~~ 422 (688)
++++.|+.+|++.|+++
T Consensus 338 ed~e~v~~edie~al~k 354 (368)
T COG1223 338 EDREKVEREDIEKALKK 354 (368)
T ss_pred hchhhhhHHHHHHHHHh
Confidence 99999999999999987
No 18
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-41 Score=368.18 Aligned_cols=248 Identities=38% Similarity=0.654 Sum_probs=224.8
Q ss_pred cCCCCcccccccccHHHHHHHHHHHHH-hcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhH
Q 005611 167 DGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 245 (688)
Q Consensus 167 ~~~~~v~f~dV~G~~~~k~~L~~ii~~-l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~ 245 (688)
+.-|+|+|+||.|.+++|.++.+-+.. +++|+.| ..|+++..|||||||||||||.+|||+|.++...|+.+.++++.
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLf-ssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELL 742 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELF-SSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELL 742 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhh-hccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHH
Confidence 445899999999999999999999986 9999988 56888899999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcC--CccCcchhhhhhhhHHHHHHHHHHHHHhcCCC--CCCc
Q 005611 246 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQG--IFKDTTDHLYNAATQERETTLNQLLIELDGFD--TGKG 321 (688)
Q Consensus 246 ~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~--~~~~ 321 (688)
++|+|++++++|+.|++|+..+|||||+||+|+++++|+. ++++. ..+.+.|||.+||++. ..+.
T Consensus 743 NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGV-----------MDRVVSQLLAELDgls~~~s~~ 811 (953)
T KOG0736|consen 743 NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGV-----------MDRVVSQLLAELDGLSDSSSQD 811 (953)
T ss_pred HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCcccc-----------HHHHHHHHHHHhhcccCCCCCc
Confidence 9999999999999999999999999999999999998864 33332 3567799999999997 5678
Q ss_pred EEEEEecCCCCcCCccccCCCccceeeeccCCC-hhhHHHHHHHHhccCcCCCccCHHHHHhhCC-CCCHHHHHHHHHHH
Q 005611 322 VIFLAATNRRDLLDPALLRPGRFDRKIRIRAPN-AKGRTEILKIHASKVKMSDSVDLSSYAKNLP-GWTGARLAQLVQEA 399 (688)
Q Consensus 322 viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd-~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~-G~s~~dL~~lv~~A 399 (688)
|+||+|||+||.|||+|+||||||+.+++.+++ .+.+..+|+...++..+++++|+.++|+.++ .|||+|+-.+|..|
T Consensus 812 VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA 891 (953)
T KOG0736|consen 812 VFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDA 891 (953)
T ss_pred eEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHH
Confidence 999999999999999999999999999999885 5678889999999999999999999999976 69999999999999
Q ss_pred HHHHHHhCC-----------------ccccHHHHHHHHHhhccC
Q 005611 400 ALVAVRKGH-----------------ESILSSDMDDAVDRLTVG 426 (688)
Q Consensus 400 ~~~A~~~~~-----------------~~I~~~di~~Al~~~~~g 426 (688)
...|.+|.- -.++++||.++.+++...
T Consensus 892 ~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PS 935 (953)
T KOG0736|consen 892 MLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPS 935 (953)
T ss_pred HHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCc
Confidence 999987621 148899999999988754
No 19
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1.7e-39 Score=353.70 Aligned_cols=252 Identities=41% Similarity=0.691 Sum_probs=234.3
Q ss_pred cCCCCcccccccccHHHHHHHHHHHHH-hcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhH
Q 005611 167 DGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 245 (688)
Q Consensus 167 ~~~~~v~f~dV~G~~~~k~~L~~ii~~-l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~ 245 (688)
...++++|+||+|++.+++++++.+.+ +.+|+.|..+|+.+|+++||+||||||||++|+++|++++.+++.+.++++.
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 457899999999999999999999885 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEE
Q 005611 246 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 325 (688)
Q Consensus 246 ~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVI 325 (688)
..+.|++...++..|..|+...||||||||+|+++.++.....+ .+.+....+.+++..++++....+++||
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~--------~d~~~~r~l~~LL~~ld~~~~~~~v~VI 288 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTG--------ADREVQRILLELLNQMDGFDQTTNVKVI 288 (398)
T ss_pred HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCC--------ccHHHHHHHHHHHHHhhccCCCCCEEEE
Confidence 99999999999999999999999999999999998776432211 2345567889999999998888899999
Q ss_pred EecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 005611 326 AATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVR 405 (688)
Q Consensus 326 aaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~G~s~~dL~~lv~~A~~~A~~ 405 (688)
+|||+++.+|++++|||||++.|++++|+.++|.+||+.++.+.++..++++..++..++||||+||.++|++|...|.+
T Consensus 289 ~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r 368 (398)
T PTZ00454 289 MATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVR 368 (398)
T ss_pred EecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCccccHHHHHHHHHhhccC
Q 005611 406 KGHESILSSDMDDAVDRLTVG 426 (688)
Q Consensus 406 ~~~~~I~~~di~~Al~~~~~g 426 (688)
+++..|+.+||.+|++++...
T Consensus 369 ~~~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 369 KNRYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred cCCCccCHHHHHHHHHHHHhc
Confidence 999999999999999998654
No 20
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-39 Score=333.24 Aligned_cols=246 Identities=35% Similarity=0.591 Sum_probs=221.9
Q ss_pred cCCCCcccccccccHHHHHHHHHHHHH-hcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhH
Q 005611 167 DGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 245 (688)
Q Consensus 167 ~~~~~v~f~dV~G~~~~k~~L~~ii~~-l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~ 245 (688)
...++++|+||.|++++|+-|++.+-. +..|+.|+.+ .+|=+|+|++||||||||+||||+|.+++..||.++.+.+.
T Consensus 204 ~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstlt 282 (491)
T KOG0738|consen 204 QRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLT 282 (491)
T ss_pred ccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhh
Confidence 456889999999999999999998875 8889888653 36668999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCC----CCc
Q 005611 246 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT----GKG 321 (688)
Q Consensus 246 ~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~----~~~ 321 (688)
++|-|++++-+|.+|+.|+..+|++|||||||+++.+|+... .++..++.-++||..|||... .+.
T Consensus 283 SKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~----------EHEaSRRvKsELLvQmDG~~~t~e~~k~ 352 (491)
T KOG0738|consen 283 SKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSS----------EHEASRRVKSELLVQMDGVQGTLENSKV 352 (491)
T ss_pred hhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCcc----------chhHHHHHHHHHHHHhhcccccccccee
Confidence 999999999999999999999999999999999999886531 456677888999999999843 244
Q ss_pred EEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccCHHHHHhhCCCCCHHHHHHHHHHHHH
Q 005611 322 VIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAAL 401 (688)
Q Consensus 322 viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~G~s~~dL~~lv~~A~~ 401 (688)
|+|+|+||.|++||++++| ||.+.|+||+|+.+.|..+++..++.....++++++.++..+.||||+||.++|++|.+
T Consensus 353 VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm 430 (491)
T KOG0738|consen 353 VMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASM 430 (491)
T ss_pred EEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 9999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCC-----------------ccccHHHHHHHHHhhcc
Q 005611 402 VAVRKGH-----------------ESILSSDMDDAVDRLTV 425 (688)
Q Consensus 402 ~A~~~~~-----------------~~I~~~di~~Al~~~~~ 425 (688)
.+.||.- ..++..||+.|+.++..
T Consensus 431 ~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~p 471 (491)
T KOG0738|consen 431 MAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRP 471 (491)
T ss_pred HHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCc
Confidence 9988521 34778888888877754
No 21
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=100.00 E-value=1.3e-39 Score=327.15 Aligned_cols=208 Identities=29% Similarity=0.468 Sum_probs=168.1
Q ss_pred cHHHHHHHHHhhccCCCccCccccCCcchhHHHHHHHHHHHHHHhhhcccccccccceeeeeeccccCceeEEecCCCcc
Q 005611 412 LSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQTLSQLVFHRLDDES 491 (688)
Q Consensus 412 ~~~di~~Al~~~~~g~~~~~~~~~~~~~~~ia~hE~GhAvv~~~l~~~~~~~~~~v~~vsI~prg~~lg~~~~~~~~~~~ 491 (688)
|++||++|++++..|++++...+++.+++++|+||+||||++++++.. +++.++||+|||.++|++.+.|. ++.
T Consensus 1 ~~~d~~~a~drv~~G~~~~~~~~~~~~~~~~A~HEAGhAvva~~l~~~-----~~v~~vsi~prg~~~G~~~~~~~-~~~ 74 (213)
T PF01434_consen 1 TMEDIEEAIDRVLMGPEKKSRKLSEEEKRRIAYHEAGHAVVAYLLPPA-----DPVSKVSIVPRGSALGFTQFTPD-EDR 74 (213)
T ss_dssp -HHHHHHHHHHHHCCSCCTTS---HHHHHHHHHHHHHHHHHHHHSSS--------EEEEESSTTCCCCHCCEECHH-TT-
T ss_pred CHHHHHHHHHHHhcCcCcCCCCCCHHHHHHHHHHHHHHHHHHHHhccc-----ccEEEEEEecCCCcceeEEeccc-hhc
Confidence 578999999999999998778889999999999999999999999876 78999999999999999999886 333
Q ss_pred cccCCHHHHHHHHHHHhhHHHHHHHHhC--CccCCCCcchHHHHHHHHHHHHHHhcCCccccccCCCCcccccc---ccc
Q 005611 492 YMFERRPQLLHRLQVLLGGRAAEEVIYG--QDTSRASVNYLADASWLARKILTIWNLENPMVIHGEPPPWRKKV---KFV 566 (688)
Q Consensus 492 ~~~~t~~~l~~~i~v~LaGraAEei~fG--~~stga~~~Dl~~At~lA~~mv~~~Gm~~~~~~~~g~~~~~~~~---~~~ 566 (688)
+.. ||.+++++|+|+|||||||+++|| ++|+|+++ ||++||++|++||..|||++++ |++++.... .|+
T Consensus 75 ~~~-t~~~l~~~i~v~LaGraAEe~~~g~~~~stGa~~-DL~~At~iA~~mv~~~Gm~~~~----g~~~~~~~~~~~~~~ 148 (213)
T PF01434_consen 75 YIR-TRSYLEDRICVLLAGRAAEELFFGEDNVSTGASS-DLQQATEIARKMVASYGMGDSL----GLLSYSPNDDDEVFL 148 (213)
T ss_dssp SS--BHHHHHHHHHHHHHHHHHHHHHHSCCS-BGGGHH-HHHHHHHHHHHHHHTST-TTTT----TSS-SEEEE-S-SSS
T ss_pred ccc-cHHHHHhhHHHHHHHHHHHHhhcCcceecccchh-HHHHHHHHHHHHHHHhCCCCCC----ceeeeeccccccccc
Confidence 344 599999999999999999999999 88999876 9999999999999999999988 888876543 233
Q ss_pred CCCcccCCCccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHH
Q 005611 567 GPRLDFEGSLYDDYGLTEPPVNFNLDDDIAWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEIDFI 642 (688)
Q Consensus 567 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~a~~~a~~lL~~~~~~l~~la~~Lle~e~L~~~ei~~i 642 (688)
|+.++. ..+.+....+.++++|+++|+++|++|+++|++||+.|++||++|+++++|+++||++|
T Consensus 149 ~~~~~~-----------~~~~s~~~~~~i~~ev~~lL~~a~~~a~~iL~~~r~~l~~la~~Lle~~~L~~~ei~~I 213 (213)
T PF01434_consen 149 GREWNS-----------RRPMSEETRALIDREVRKLLEEAYARAKEILEENREALEALAEALLEKETLSGEEIEEI 213 (213)
T ss_dssp -E---E-----------EESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHH
T ss_pred cccccc-----------cCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHhhC
Confidence 322200 00122233455677889999999999999999999999999999999999999999986
No 22
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=7.6e-38 Score=342.10 Aligned_cols=255 Identities=45% Similarity=0.756 Sum_probs=235.0
Q ss_pred cCCCCcccccccccHHHHHHHHHHHHH-hcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhH
Q 005611 167 DGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 245 (688)
Q Consensus 167 ~~~~~v~f~dV~G~~~~k~~L~~ii~~-l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~ 245 (688)
...++++|+||+|++++++++++.+.. +.+++.|..+|+.+|+++||+||||||||++|+++|++++.+|+.++++++.
T Consensus 123 ~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~ 202 (389)
T PRK03992 123 IESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 202 (389)
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHh
Confidence 455789999999999999999999886 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEE
Q 005611 246 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 325 (688)
Q Consensus 246 ~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVI 325 (688)
..+.|.+...++.+|..|....||||||||+|.++.++.+.... ...+..+.+.+++.+++++....++.||
T Consensus 203 ~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~--------~~~~~~~~l~~lL~~ld~~~~~~~v~VI 274 (389)
T PRK03992 203 QKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTS--------GDREVQRTLMQLLAEMDGFDPRGNVKII 274 (389)
T ss_pred HhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCC--------ccHHHHHHHHHHHHhccccCCCCCEEEE
Confidence 99999999999999999999999999999999999776543211 2345567788999999998887899999
Q ss_pred EecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 005611 326 AATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVR 405 (688)
Q Consensus 326 aaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~G~s~~dL~~lv~~A~~~A~~ 405 (688)
+|||+++.+|++++|||||++.|++++|+.++|.+||+.++++..+..++++..++..|.||+++||.++|++|...|.+
T Consensus 275 ~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~ 354 (389)
T PRK03992 275 AATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIR 354 (389)
T ss_pred EecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888889999999999999999999999999999999
Q ss_pred hCCccccHHHHHHHHHhhccCCCc
Q 005611 406 KGHESILSSDMDDAVDRLTVGPKR 429 (688)
Q Consensus 406 ~~~~~I~~~di~~Al~~~~~g~~~ 429 (688)
+++..|+.+||.+|++++....+.
T Consensus 355 ~~~~~i~~~d~~~A~~~~~~~~~~ 378 (389)
T PRK03992 355 DDRTEVTMEDFLKAIEKVMGKEEK 378 (389)
T ss_pred cCCCCcCHHHHHHHHHHHhccccc
Confidence 999999999999999998765443
No 23
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=8.7e-38 Score=342.12 Aligned_cols=252 Identities=40% Similarity=0.712 Sum_probs=232.9
Q ss_pred cCCCCcccccccccHHHHHHHHHHHHH-hcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhH
Q 005611 167 DGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 245 (688)
Q Consensus 167 ~~~~~v~f~dV~G~~~~k~~L~~ii~~-l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~ 245 (688)
...+.++|+||.|++++++++++.+.. +.+|+.|..+|+.+|+++||+||||||||++|+++|++++.+|+.+.++++.
T Consensus 175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~ 254 (438)
T PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI 254 (438)
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh
Confidence 456789999999999999999999985 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEE
Q 005611 246 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 325 (688)
Q Consensus 246 ~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVI 325 (688)
..+.|.+...++..|..|....||||||||+|+++.++.....+ ...+...++.+++..++++....++.||
T Consensus 255 ~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sg--------g~~e~qr~ll~LL~~Ldg~~~~~~V~VI 326 (438)
T PTZ00361 255 QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSG--------GEKEIQRTMLELLNQLDGFDSRGDVKVI 326 (438)
T ss_pred hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCc--------ccHHHHHHHHHHHHHHhhhcccCCeEEE
Confidence 99999999999999999999999999999999999776432211 3345567778899999998877889999
Q ss_pred EecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 005611 326 AATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVR 405 (688)
Q Consensus 326 aaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~G~s~~dL~~lv~~A~~~A~~ 405 (688)
+|||+++.+|++++|||||++.|+|++|+.++|.+||+.++.+..+..++++..++..+.|+|++||.++|++|...|.+
T Consensus 327 ~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr 406 (438)
T PTZ00361 327 MATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALR 406 (438)
T ss_pred EecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred hCCccccHHHHHHHHHhhccC
Q 005611 406 KGHESILSSDMDDAVDRLTVG 426 (688)
Q Consensus 406 ~~~~~I~~~di~~Al~~~~~g 426 (688)
+++..|+.+||..|++++...
T Consensus 407 ~~r~~Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 407 ERRMKVTQADFRKAKEKVLYR 427 (438)
T ss_pred hcCCccCHHHHHHHHHHHHhh
Confidence 999999999999999998654
No 24
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-38 Score=341.31 Aligned_cols=227 Identities=41% Similarity=0.703 Sum_probs=216.3
Q ss_pred CCCcccccccccHHHHHHHHHHHHH-hcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHHH
Q 005611 169 STGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV 247 (688)
Q Consensus 169 ~~~v~f~dV~G~~~~k~~L~~ii~~-l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~~ 247 (688)
..++.|+||.|+.++|+.|++.+.+ -++|..|.+..++.+.|||||||||||||+||.++|..++..|+.+.++++.++
T Consensus 661 ~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~K 740 (952)
T KOG0735|consen 661 STGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSK 740 (952)
T ss_pred cCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHH
Confidence 3469999999999999999999998 899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 005611 248 LVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAA 327 (688)
Q Consensus 248 ~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaa 327 (688)
|.|.+++.+|++|.+|+..+|||||+||+|+++++|+.+..+. ..+.+|++|.+|||.+.-.+|.|+|+
T Consensus 741 yIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGV-----------TDRVVNQlLTelDG~Egl~GV~i~aa 809 (952)
T KOG0735|consen 741 YIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGV-----------TDRVVNQLLTELDGAEGLDGVYILAA 809 (952)
T ss_pred HhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCc-----------hHHHHHHHHHhhccccccceEEEEEe
Confidence 9999999999999999999999999999999999998765553 35678999999999999999999999
Q ss_pred cCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 005611 328 TNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRK 406 (688)
Q Consensus 328 TN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~G~s~~dL~~lv~~A~~~A~~~ 406 (688)
|.+||.+||+|+||||+|+.++.+.|+..+|.+|++...+......++|++.+|..|+||||+||..++..|...|.++
T Consensus 810 TsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 810 TSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred cCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999888764
No 25
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=4.1e-36 Score=353.92 Aligned_cols=249 Identities=43% Similarity=0.758 Sum_probs=228.5
Q ss_pred CCCCcccccccccHHHHHHHHHHHHH-hcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHH
Q 005611 168 GSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 246 (688)
Q Consensus 168 ~~~~v~f~dV~G~~~~k~~L~~ii~~-l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~ 246 (688)
..+.++|+||+|++.+|+.|++.+.+ +++++.+..+|.++|+|+||+||||||||++|+++|++++.+|+.++++++.+
T Consensus 446 ~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~ 525 (733)
T TIGR01243 446 EVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILS 525 (733)
T ss_pred cccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhh
Confidence 34688999999999999999999986 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEE
Q 005611 247 VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLA 326 (688)
Q Consensus 247 ~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIa 326 (688)
+|+|++++.++.+|..|+...||||||||+|++++.++... ......+.+++++.+||++....+++||+
T Consensus 526 ~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~----------~~~~~~~~~~~lL~~ldg~~~~~~v~vI~ 595 (733)
T TIGR01243 526 KWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF----------DTSVTDRIVNQLLTEMDGIQELSNVVVIA 595 (733)
T ss_pred cccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC----------CccHHHHHHHHHHHHhhcccCCCCEEEEE
Confidence 99999999999999999999999999999999998775422 12234678899999999998888999999
Q ss_pred ecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 005611 327 ATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRK 406 (688)
Q Consensus 327 aTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~G~s~~dL~~lv~~A~~~A~~~ 406 (688)
|||+|+.+|++++|||||++++++++|+.++|.+||+.+.++.++..++|+..+|+.|.||||+||.++|++|...|.++
T Consensus 596 aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~ 675 (733)
T TIGR01243 596 ATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRE 675 (733)
T ss_pred eCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998874
Q ss_pred C------------------CccccHHHHHHHHHhhccC
Q 005611 407 G------------------HESILSSDMDDAVDRLTVG 426 (688)
Q Consensus 407 ~------------------~~~I~~~di~~Al~~~~~g 426 (688)
. ...|+.+||..|+.++...
T Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps 713 (733)
T TIGR01243 676 SIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPS 713 (733)
T ss_pred HhhhccchhhhcccccccccCcccHHHHHHHHHHcCCC
Confidence 2 1268999999999877543
No 26
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-36 Score=338.93 Aligned_cols=247 Identities=47% Similarity=0.739 Sum_probs=229.9
Q ss_pred cCCCCcccccccccHHHHHHHHHHHHH-hcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhH
Q 005611 167 DGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 245 (688)
Q Consensus 167 ~~~~~v~f~dV~G~~~~k~~L~~ii~~-l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~ 245 (688)
...+.++|+|+.|++..++.+++.+.+ +++++.|...+.++++++||+||||||||++|+++|.+++.+|+.+.++++.
T Consensus 234 ~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~ 313 (494)
T COG0464 234 FEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELL 313 (494)
T ss_pred cCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHh
Confidence 456789999999999999999999997 8899999988999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEE
Q 005611 246 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 325 (688)
Q Consensus 246 ~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVI 325 (688)
++|+|+++++++..|..|+...||||||||+|++...++.... ....+.+++++.++++.....+|+||
T Consensus 314 sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~-----------~~~~r~~~~lL~~~d~~e~~~~v~vi 382 (494)
T COG0464 314 SKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSED-----------GSGRRVVGQLLTELDGIEKAEGVLVI 382 (494)
T ss_pred ccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCc-----------hHHHHHHHHHHHHhcCCCccCceEEE
Confidence 9999999999999999999999999999999999998875321 22267889999999999999999999
Q ss_pred EecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCc--CCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 005611 326 AATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVK--MSDSVDLSSYAKNLPGWTGARLAQLVQEAALVA 403 (688)
Q Consensus 326 aaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~--~~~~~dl~~la~~t~G~s~~dL~~lv~~A~~~A 403 (688)
+|||+|+.+|++++|||||++.+++++||.++|.+|++.+++... +..++++..+++.+.||+++||..+|++|...+
T Consensus 383 ~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~ 462 (494)
T COG0464 383 AATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEA 462 (494)
T ss_pred ecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998544 357899999999999999999999999999999
Q ss_pred HHhC-CccccHHHHHHHHHhhc
Q 005611 404 VRKG-HESILSSDMDDAVDRLT 424 (688)
Q Consensus 404 ~~~~-~~~I~~~di~~Al~~~~ 424 (688)
.++. ...++.+||.+|+.+..
T Consensus 463 ~~~~~~~~~~~~~~~~a~~~~~ 484 (494)
T COG0464 463 LREARRREVTLDDFLDALKKIK 484 (494)
T ss_pred HHHhccCCccHHHHHHHHHhcC
Confidence 9988 77899999999999843
No 27
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=2.6e-35 Score=320.59 Aligned_cols=249 Identities=47% Similarity=0.785 Sum_probs=229.1
Q ss_pred cCCCCcccccccccHHHHHHHHHHHHH-hcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhH
Q 005611 167 DGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 245 (688)
Q Consensus 167 ~~~~~v~f~dV~G~~~~k~~L~~ii~~-l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~ 245 (688)
...+.++|+||.|++++++++++.+.. +.+++.|..+|+.+|++++|+||||||||++|+++|++++.+++.+.++++.
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 456789999999999999999999875 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEE
Q 005611 246 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 325 (688)
Q Consensus 246 ~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVI 325 (688)
..+.|.+...++..|..+....|+||||||+|.++.++.....+ ...+....+.+++.+++++....++.||
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~--------~~~~~~~~l~~ll~~ld~~~~~~~v~vI 265 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTS--------GDREVQRTLMQLLAELDGFDPRGNVKVI 265 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCC--------ccHHHHHHHHHHHHHhhCCCCCCCEEEE
Confidence 99999999999999999999999999999999998766432211 3445567788999999988777889999
Q ss_pred EecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 005611 326 AATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVR 405 (688)
Q Consensus 326 aaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~G~s~~dL~~lv~~A~~~A~~ 405 (688)
+|||+++.+|++++|||||++.|++++|+.++|.+|++.++.+..+..++++..+++.+.||+++||.++|++|...|.+
T Consensus 266 ~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~ 345 (364)
T TIGR01242 266 AATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIR 345 (364)
T ss_pred EecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988888889999999999999999999999999999999
Q ss_pred hCCccccHHHHHHHHHhh
Q 005611 406 KGHESILSSDMDDAVDRL 423 (688)
Q Consensus 406 ~~~~~I~~~di~~Al~~~ 423 (688)
+++..|+.+||.+|++++
T Consensus 346 ~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 346 EERDYVTMDDFIKAVEKV 363 (364)
T ss_pred hCCCccCHHHHHHHHHHh
Confidence 999999999999999875
No 28
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=2e-35 Score=328.12 Aligned_cols=242 Identities=27% Similarity=0.420 Sum_probs=211.5
Q ss_pred CCCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHHHH
Q 005611 169 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVL 248 (688)
Q Consensus 169 ~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~~~ 248 (688)
.++++|+||.|++..|+++++....+ +.....+|+++|+|+||+||||||||++|+++|++++.|++.++++.+.+.+
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 46789999999999999998765433 2334577899999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEec
Q 005611 249 VGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAAT 328 (688)
Q Consensus 249 ~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaT 328 (688)
+|+++.+++.+|..|+..+||||||||+|.++.+++... ......+.++.++..++. ...+++||+||
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~----------d~~~~~rvl~~lL~~l~~--~~~~V~vIaTT 367 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKG----------DSGTTNRVLATFITWLSE--KKSPVFVVATA 367 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCC----------CchHHHHHHHHHHHHHhc--CCCceEEEEec
Confidence 999999999999999999999999999999886543211 123345677888888873 45679999999
Q ss_pred CCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCC--CccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 005611 329 NRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS--DSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRK 406 (688)
Q Consensus 329 N~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~--~~~dl~~la~~t~G~s~~dL~~lv~~A~~~A~~~ 406 (688)
|+++.+|++++|+||||+.+++++|+.++|.+||+.++++.... .+.++..+++.|.||||+||+++|++|...|..+
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~ 447 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYE 447 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999886432 4788999999999999999999999999999876
Q ss_pred CCccccHHHHHHHHHhhcc
Q 005611 407 GHESILSSDMDDAVDRLTV 425 (688)
Q Consensus 407 ~~~~I~~~di~~Al~~~~~ 425 (688)
+ ..++.+|+..|+.++.+
T Consensus 448 ~-~~lt~~dl~~a~~~~~P 465 (489)
T CHL00195 448 K-REFTTDDILLALKQFIP 465 (489)
T ss_pred C-CCcCHHHHHHHHHhcCC
Confidence 6 56899999999988875
No 29
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-36 Score=308.83 Aligned_cols=229 Identities=38% Similarity=0.625 Sum_probs=209.1
Q ss_pred cccCCCCcccccccccHHHHHHHHHHHHH-hcChhhhhcc-CCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCc
Q 005611 165 RVDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKM-GIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS 242 (688)
Q Consensus 165 ~~~~~~~v~f~dV~G~~~~k~~L~~ii~~-l~~~~~~~~~-g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~ 242 (688)
+.+...+++|+||.|++.+++.|++.+.. ++.|+.|..- -.++++||||+||||||||++|+++|++++.+|+.++++
T Consensus 82 v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s 161 (386)
T KOG0737|consen 82 VPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVS 161 (386)
T ss_pred cchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeecc
Confidence 44566799999999999999999998876 9999998532 267899999999999999999999999999999999999
Q ss_pred hhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCc-
Q 005611 243 EFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKG- 321 (688)
Q Consensus 243 ~~~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~- 321 (688)
.+.++|.|++.+.++..|..|.+-.||||||||+|+++..|+. ..++.....-+++...+||+..+.+
T Consensus 162 ~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s-----------~dHEa~a~mK~eFM~~WDGl~s~~~~ 230 (386)
T KOG0737|consen 162 NLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRS-----------TDHEATAMMKNEFMALWDGLSSKDSE 230 (386)
T ss_pred ccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhccc-----------chHHHHHHHHHHHHHHhccccCCCCc
Confidence 9999999999999999999999999999999999999988743 1445555666899999999976654
Q ss_pred -EEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccCHHHHHhhCCCCCHHHHHHHHHHHH
Q 005611 322 -VIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAA 400 (688)
Q Consensus 322 -viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~G~s~~dL~~lv~~A~ 400 (688)
|+|+||||+|.++|.+++| |+.+.++|+.|+.++|++||+..+++.++.+++|+.++|+.|.||||.||.++|+.|+
T Consensus 231 rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa 308 (386)
T KOG0737|consen 231 RVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAA 308 (386)
T ss_pred eEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 9999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 005611 401 LVAVRK 406 (688)
Q Consensus 401 ~~A~~~ 406 (688)
....++
T Consensus 309 ~~~ire 314 (386)
T KOG0737|consen 309 LRPIRE 314 (386)
T ss_pred HhHHHH
Confidence 888764
No 30
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-36 Score=303.35 Aligned_cols=230 Identities=37% Similarity=0.614 Sum_probs=207.2
Q ss_pred ccccCCCCcccccccccHHHHHHHHHHHHH-hcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCc
Q 005611 164 ARVDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS 242 (688)
Q Consensus 164 ~~~~~~~~v~f~dV~G~~~~k~~L~~ii~~-l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~ 242 (688)
+++.++|+++|+||.|++.+|+.|++.+-. ++.|+.|... -+|=+|+||+||||||||.||+++|.+++..||.++.+
T Consensus 122 AIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGk-R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSS 200 (439)
T KOG0739|consen 122 AIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGK-RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 200 (439)
T ss_pred hhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCC-CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehH
Confidence 355678999999999999999999998775 8889887542 35567999999999999999999999999999999999
Q ss_pred hhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCC-CCc
Q 005611 243 EFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT-GKG 321 (688)
Q Consensus 243 ~~~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~-~~~ 321 (688)
++.++|.|++++-++.+|+.|+.+.|+||||||||++++.+++. .++..+++-.++|..|.+... +.+
T Consensus 201 DLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~en-----------EseasRRIKTEfLVQMqGVG~d~~g 269 (439)
T KOG0739|consen 201 DLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSEN-----------ESEASRRIKTEFLVQMQGVGNDNDG 269 (439)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCC-----------chHHHHHHHHHHHHhhhccccCCCc
Confidence 99999999999999999999999999999999999999998763 344566777899999998854 568
Q ss_pred EEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCC-CccCHHHHHhhCCCCCHHHHHHHHHHHH
Q 005611 322 VIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQEAA 400 (688)
Q Consensus 322 viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~-~~~dl~~la~~t~G~s~~dL~~lv~~A~ 400 (688)
|+|+++||-|+.||.+++| ||++.|++|+|+...|..+++.|+...+.. .+.|+..|++.|+||||+||.-+++.|.
T Consensus 270 vLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDal 347 (439)
T KOG0739|consen 270 VLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDAL 347 (439)
T ss_pred eEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhh
Confidence 9999999999999999999 999999999999999999999999876644 4568999999999999999999999999
Q ss_pred HHHHHhC
Q 005611 401 LVAVRKG 407 (688)
Q Consensus 401 ~~A~~~~ 407 (688)
...+|+-
T Consensus 348 mePvRkv 354 (439)
T KOG0739|consen 348 MEPVRKV 354 (439)
T ss_pred hhhHHHh
Confidence 9888764
No 31
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-36 Score=304.78 Aligned_cols=251 Identities=41% Similarity=0.680 Sum_probs=236.6
Q ss_pred cCCCCcccccccccHHHHHHHHHHHHH-hcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhH
Q 005611 167 DGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 245 (688)
Q Consensus 167 ~~~~~v~f~dV~G~~~~k~~L~~ii~~-l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~ 245 (688)
+...+++|+++.|.-++..++++.+.. +.+|+.+.+.|+++|++++||||||+|||.+|+++|...+++|+.+..+++.
T Consensus 124 e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv 203 (388)
T KOG0651|consen 124 EDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALV 203 (388)
T ss_pred cCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhh
Confidence 455789999999999999999999886 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEE
Q 005611 246 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 325 (688)
Q Consensus 246 ~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVI 325 (688)
+++.|+.++-+|+.|+.|+...|||||+||||+.++++... ....+.+.++++..|+.+|+++....+|-+|
T Consensus 204 ~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se--------~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~I 275 (388)
T KOG0651|consen 204 DKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSE--------GTSSDREIQRTLMELLNQMDGFDTLHRVKTI 275 (388)
T ss_pred hhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEecc--------ccchhHHHHHHHHHHHHhhccchhcccccEE
Confidence 99999999999999999999999999999999999887331 1236788999999999999999999999999
Q ss_pred EecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 005611 326 AATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVR 405 (688)
Q Consensus 326 aaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~G~s~~dL~~lv~~A~~~A~~ 405 (688)
+|||+|+.|||+|+||||+|+.+++|+|+...|..|++.|.+.+.....+|.+.+.+..+||+++|+.+.|.+|-..|.+
T Consensus 276 matNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~ 355 (388)
T KOG0651|consen 276 MATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIP 355 (388)
T ss_pred EecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccc
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hCCccccHHHHHHHHHhhcc
Q 005611 406 KGHESILSSDMDDAVDRLTV 425 (688)
Q Consensus 406 ~~~~~I~~~di~~Al~~~~~ 425 (688)
..+..+..+|+..++.++..
T Consensus 356 ~~~~~vl~Ed~~k~vrk~~~ 375 (388)
T KOG0651|consen 356 EERDEVLHEDFMKLVRKQAD 375 (388)
T ss_pred hhhHHHhHHHHHHHHHHHHH
Confidence 99999999999999988754
No 32
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=8.7e-33 Score=306.48 Aligned_cols=254 Identities=33% Similarity=0.598 Sum_probs=209.6
Q ss_pred ccCCCCcccccccccHHHHHHHHHHHHH-hcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC---------
Q 005611 166 VDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--------- 235 (688)
Q Consensus 166 ~~~~~~v~f~dV~G~~~~k~~L~~ii~~-l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~--------- 235 (688)
.+..++++|+||+|+++.++++++.+.. +.+++.|...|+++|+|+|||||||||||++++++|++++.+
T Consensus 173 ~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~ 252 (512)
T TIGR03689 173 LEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKS 252 (512)
T ss_pred eecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCce
Confidence 3556889999999999999999998886 899999999999999999999999999999999999998654
Q ss_pred -EEEeeCchhHHHHhhhhhHHHHHHHHHHHhC----CCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHH
Q 005611 236 -FYQMAGSEFVEVLVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLL 310 (688)
Q Consensus 236 -~~~v~~~~~~~~~~g~~~~~~r~~f~~A~~~----~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL 310 (688)
|+.+..+++.+++.|++++.++.+|..|+.. .||||||||+|+++.+++... .+......+++++
T Consensus 253 ~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~----------s~d~e~~il~~LL 322 (512)
T TIGR03689 253 YFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV----------SSDVETTVVPQLL 322 (512)
T ss_pred eEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc----------cchHHHHHHHHHH
Confidence 5677788888999999999999999988764 699999999999998765321 1222356779999
Q ss_pred HHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhcc-CcCCC---------ccCHHHH
Q 005611 311 IELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASK-VKMSD---------SVDLSSY 380 (688)
Q Consensus 311 ~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~-~~~~~---------~~dl~~l 380 (688)
..||++....+++||+|||+++.|||+++||||||++|+|++|+.++|.+||+.++.. .++.. ..++..+
T Consensus 323 ~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al 402 (512)
T TIGR03689 323 SELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAAL 402 (512)
T ss_pred HHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHH
Confidence 9999998888999999999999999999999999999999999999999999999864 23311 1122222
Q ss_pred Hhh-----------------------------CCCCCHHHHHHHHHHHHHHHHHh----CCccccHHHHHHHHHhhccCC
Q 005611 381 AKN-----------------------------LPGWTGARLAQLVQEAALVAVRK----GHESILSSDMDDAVDRLTVGP 427 (688)
Q Consensus 381 a~~-----------------------------t~G~s~~dL~~lv~~A~~~A~~~----~~~~I~~~di~~Al~~~~~g~ 427 (688)
++. ++.+||++|+++|.+|...|.++ +...|+.+|+..|+..-...-
T Consensus 403 ~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~~ 482 (512)
T TIGR03689 403 IQRAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRES 482 (512)
T ss_pred HHHHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhccc
Confidence 211 45578999999999998888765 446889999999988765543
Q ss_pred Cc
Q 005611 428 KR 429 (688)
Q Consensus 428 ~~ 429 (688)
+.
T Consensus 483 ~~ 484 (512)
T TIGR03689 483 ED 484 (512)
T ss_pred cc
Confidence 33
No 33
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.1e-31 Score=290.64 Aligned_cols=241 Identities=40% Similarity=0.683 Sum_probs=223.5
Q ss_pred CCcccccccccHHHHHHHHHHHHH-hcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHHHH
Q 005611 170 TGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVL 248 (688)
Q Consensus 170 ~~v~f~dV~G~~~~k~~L~~ii~~-l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~~~ 248 (688)
..+. .++.|.......+++.+.. +.++..+...|+++|+++|+|||||||||.+++++|++.++.++.+++++++.++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5566 7899999999999999987 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhCC-CeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 005611 249 VGVGSARIRDLFKRAKVNK-PSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAA 327 (688)
Q Consensus 249 ~g~~~~~~r~~f~~A~~~~-p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaa 327 (688)
.|++++.+|..|++|.+.+ |+++||||+|++++++... .....++..+++..+|+..+..+++||++
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~------------~~~e~Rv~sqlltL~dg~~~~~~vivl~a 326 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGA------------DDVESRVVSQLLTLLDGLKPDAKVIVLAA 326 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCccccc------------chHHHHHHHHHHHHHhhCcCcCcEEEEEe
Confidence 9999999999999999999 9999999999999988642 12345677899999999998899999999
Q ss_pred cCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Q 005611 328 TNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKG 407 (688)
Q Consensus 328 TN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~G~s~~dL~~lv~~A~~~A~~~~ 407 (688)
||+|+.||++++| ||||+.+++..|+..+|.+|++.+.++++..++.++..+|..++||.|+||..+|++|...+.++
T Consensus 327 tnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~- 404 (693)
T KOG0730|consen 327 TNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR- 404 (693)
T ss_pred cCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-
Confidence 9999999999999 99999999999999999999999999999998899999999999999999999999999999887
Q ss_pred CccccHHHHHHHHHhhccCCCc
Q 005611 408 HESILSSDMDDAVDRLTVGPKR 429 (688)
Q Consensus 408 ~~~I~~~di~~Al~~~~~g~~~ 429 (688)
+++++..|...+.+...+
T Consensus 405 ----~~~~~~~A~~~i~psa~R 422 (693)
T KOG0730|consen 405 ----TLEIFQEALMGIRPSALR 422 (693)
T ss_pred ----hHHHHHHHHhcCCchhhh
Confidence 888999998887664433
No 34
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.7e-31 Score=283.81 Aligned_cols=249 Identities=33% Similarity=0.568 Sum_probs=213.9
Q ss_pred CCCCcccccc--cccHHHHHHH-HHHHH-HhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-CEEEeeCc
Q 005611 168 GSTGVKFSDV--AGIDEAVEEL-QELVR-YLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV-PFYQMAGS 242 (688)
Q Consensus 168 ~~~~v~f~dV--~G~~~~k~~L-~~ii~-~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~-~~~~v~~~ 242 (688)
..|+.+|+++ .|++..-..+ ++... .+-.|+...++|++.-+|+|||||||||||.+||.+...++. +--.++++
T Consensus 212 i~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGP 291 (744)
T KOG0741|consen 212 INPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGP 291 (744)
T ss_pred cCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcH
Confidence 3578889985 8888665554 44333 377889999999999999999999999999999999998864 55778999
Q ss_pred hhHHHHhhhhhHHHHHHHHHHHhC--------CCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhc
Q 005611 243 EFVEVLVGVGSARIRDLFKRAKVN--------KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD 314 (688)
Q Consensus 243 ~~~~~~~g~~~~~~r~~f~~A~~~--------~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld 314 (688)
+..++|+|+++.++|.+|+.|... .-.||++||||+++..|++..++ .......+||||.-||
T Consensus 292 eIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~---------TGVhD~VVNQLLsKmD 362 (744)
T KOG0741|consen 292 EILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGS---------TGVHDTVVNQLLSKMD 362 (744)
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCC---------CCccHHHHHHHHHhcc
Confidence 999999999999999999988431 23599999999999998764433 2234578899999999
Q ss_pred CCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccC----cCCCccCHHHHHhhCCCCCHH
Q 005611 315 GFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKV----KMSDSVDLSSYAKNLPGWTGA 390 (688)
Q Consensus 315 ~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~----~~~~~~dl~~la~~t~G~s~~ 390 (688)
|.+.-.+++||+.||++|.+|+||+|||||..++++.+||+..|.+|++.|.+++ .+..++|+.++|++|..|||+
T Consensus 363 GVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGA 442 (744)
T KOG0741|consen 363 GVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGA 442 (744)
T ss_pred cHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchh
Confidence 9999999999999999999999999999999999999999999999999998764 366899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC---------------CccccHHHHHHHHHhhcc
Q 005611 391 RLAQLVQEAALVAVRKG---------------HESILSSDMDDAVDRLTV 425 (688)
Q Consensus 391 dL~~lv~~A~~~A~~~~---------------~~~I~~~di~~Al~~~~~ 425 (688)
+|+.+++.|...|..|. +-.|+.+||..|++.+.+
T Consensus 443 EleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkP 492 (744)
T KOG0741|consen 443 ELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKP 492 (744)
T ss_pred HHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCc
Confidence 99999999998887552 125899999999997765
No 35
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.97 E-value=2.9e-30 Score=269.90 Aligned_cols=263 Identities=19% Similarity=0.196 Sum_probs=197.1
Q ss_pred Ccccccc-cccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHHHHh
Q 005611 171 GVKFSDV-AGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLV 249 (688)
Q Consensus 171 ~v~f~dV-~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~~~~ 249 (688)
.-+|+++ .|+--.+.-+..++..+...-. ...++++|.+++||||||||||++|+++|++++++++.++++++.++|+
T Consensus 111 ~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l-~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~v 189 (413)
T PLN00020 111 TRSFDNLVGGYYIAPAFMDKVAVHIAKNFL-ALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENA 189 (413)
T ss_pred hcchhhhcCccccCHHHHHHHHHHHHhhhh-hccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcC
Confidence 4567777 6666555555555433221111 1367899999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHh-----CCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCC--------
Q 005611 250 GVGSARIRDLFKRAKV-----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF-------- 316 (688)
Q Consensus 250 g~~~~~~r~~f~~A~~-----~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~-------- 316 (688)
|++++.+|..|..|.. .+||||||||||++++++.... .....+....+|+..+|+.
T Consensus 190 GEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~----------~tv~~qiV~~tLLnl~D~p~~v~l~G~ 259 (413)
T PLN00020 190 GEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQ----------YTVNNQMVNGTLMNIADNPTNVSLGGD 259 (413)
T ss_pred CcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCC----------cchHHHHHHHHHHHHhcCCcccccccc
Confidence 9999999999999975 4699999999999998875321 1111222336788877752
Q ss_pred ----CCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccCHHHHHhhCCC----CC
Q 005611 317 ----DTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPG----WT 388 (688)
Q Consensus 317 ----~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~G----~s 388 (688)
....+|+||+|||+|+.|||+|+||||||+.+ +.|+.++|.+|++.++++.+++ ..|+..++..++| |.
T Consensus 260 w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~ 336 (413)
T PLN00020 260 WREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFF 336 (413)
T ss_pred ccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhh
Confidence 34567999999999999999999999999965 5899999999999999988776 5789999999887 56
Q ss_pred HHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHhhccCCCccCccccCCcchhHHHHHHHHHHHHHH
Q 005611 389 GARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHL 455 (688)
Q Consensus 389 ~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al~~~~~g~~~~~~~~~~~~~~~ia~hE~GhAvv~~~ 455 (688)
|+--..+..++...-+.+- . ++..-+++.. .++..+.........-..-|.||.++...
T Consensus 337 GAlrar~yd~~v~~~i~~~----g---~~~~~~~l~~-~~~~~p~f~~~~~t~~~l~~~g~~l~~eq 395 (413)
T PLN00020 337 GALRARVYDDEVRKWIAEV----G---VENLGKKLVN-SKKGPPTFEPPKMTLEKLLEYGNMLVREQ 395 (413)
T ss_pred hHHHHHHHHHHHHHHHHHh----h---HHHHHHHHhc-CCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 7666677666655544331 1 2222222332 23334455566666778899999998763
No 36
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=6.7e-30 Score=301.28 Aligned_cols=247 Identities=44% Similarity=0.749 Sum_probs=222.7
Q ss_pred CCCcccccccccHHHHHHHHHHHHH-hcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHHH
Q 005611 169 STGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV 247 (688)
Q Consensus 169 ~~~v~f~dV~G~~~~k~~L~~ii~~-l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~~ 247 (688)
.++++|+||+|++++++.+++.+.. +++|+.|+.+|+.+|+++||+||||||||++++++|++++.+++.++++++...
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 4679999999999999999999886 899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 005611 248 LVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAA 327 (688)
Q Consensus 248 ~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaa 327 (688)
+.|...++++.+|..|....|+||||||+|.+..++.... .......+++|+..++++.....++||++
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~-----------~~~~~~~~~~Ll~~ld~l~~~~~vivI~a 320 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT-----------GEVEKRVVAQLLTLMDGLKGRGRVIVIGA 320 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc-----------chHHHHHHHHHHHHhhccccCCCEEEEee
Confidence 9999999999999999999999999999999997765421 12234567889999998888888999999
Q ss_pred cCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Q 005611 328 TNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKG 407 (688)
Q Consensus 328 TN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~G~s~~dL~~lv~~A~~~A~~~~ 407 (688)
||+++.+|++++|+|||++.+++++|+.++|.+|++.+.+...+..+.++..++..+.||+++|+..++++|...+.++.
T Consensus 321 tn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~ 400 (733)
T TIGR01243 321 TNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRF 400 (733)
T ss_pred cCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888888899999999999999999999999998887652
Q ss_pred -------------------CccccHHHHHHHHHhhccC
Q 005611 408 -------------------HESILSSDMDDAVDRLTVG 426 (688)
Q Consensus 408 -------------------~~~I~~~di~~Al~~~~~g 426 (688)
...++.+|+..|+..+...
T Consensus 401 ~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps 438 (733)
T TIGR01243 401 IREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPS 438 (733)
T ss_pred hhccccccccccccchhcccccccHHHHHHHHhhcccc
Confidence 1247789999999877654
No 37
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.8e-30 Score=299.56 Aligned_cols=251 Identities=38% Similarity=0.650 Sum_probs=223.8
Q ss_pred CCCCcccccccccHHHHHHHHHHHHH-hcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEeeC
Q 005611 168 GSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAG 241 (688)
Q Consensus 168 ~~~~v~f~dV~G~~~~k~~L~~ii~~-l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~-----~~~~~~v~~ 241 (688)
....++|++|+|.+..+++|++.+.. +.+|+.|.++++.||+|+|++||||||||+.|+++|..+ ...|+.-.+
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 34588999999999999999999886 999999999999999999999999999999999999977 467888899
Q ss_pred chhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCc
Q 005611 242 SEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKG 321 (688)
Q Consensus 242 ~~~~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ 321 (688)
++..++|+|+.+..+|.+|+.|+...|+|+|+||||.+++.|+.. ..+.....+..||..|||+..+..
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSsk-----------qEqih~SIvSTLLaLmdGldsRgq 406 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSK-----------QEQIHASIVSTLLALMDGLDSRGQ 406 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccch-----------HHHhhhhHHHHHHHhccCCCCCCc
Confidence 999999999999999999999999999999999999999988652 455567788899999999999999
Q ss_pred EEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCC-CccCHHHHHhhCCCCCHHHHHHHHHHHH
Q 005611 322 VIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQEAA 400 (688)
Q Consensus 322 viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~-~~~dl~~la~~t~G~s~~dL~~lv~~A~ 400 (688)
|+||+|||+|+.+||+++||||||+.+++++|+.+.|.+|+..+..+-.-. ...-+..+|..+.||-|+||+.+|.+|+
T Consensus 407 VvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAa 486 (1080)
T KOG0732|consen 407 VVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAA 486 (1080)
T ss_pred eEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998765522 1223778999999999999999999999
Q ss_pred HHHHHhCC----------------ccccHHHHHHHHHhhccCCCc
Q 005611 401 LVAVRKGH----------------ESILSSDMDDAVDRLTVGPKR 429 (688)
Q Consensus 401 ~~A~~~~~----------------~~I~~~di~~Al~~~~~g~~~ 429 (688)
..+.++.- ..+...||..|+.+......+
T Consensus 487 l~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 487 LIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred hhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCc
Confidence 99987632 237788888998888765544
No 38
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.3e-29 Score=265.78 Aligned_cols=245 Identities=34% Similarity=0.540 Sum_probs=208.0
Q ss_pred cCCCCcccccccccHHHHHHHHHHHHH-hcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhH
Q 005611 167 DGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 245 (688)
Q Consensus 167 ~~~~~v~f~dV~G~~~~k~~L~~ii~~-l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~ 245 (688)
.....+.|+|+.|.+.+++.+.+.+-+ +..++.|..+. .+++++||.||||+|||+|++++|.+++..|+.++.+.+.
T Consensus 145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLt 223 (428)
T KOG0740|consen 145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLT 223 (428)
T ss_pred ccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhh
Confidence 344679999999999999999999887 77788887654 5667999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCC--CCCcEE
Q 005611 246 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD--TGKGVI 323 (688)
Q Consensus 246 ~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~--~~~~vi 323 (688)
++|+|+++..+|.+|.-|+..+|+|+||||+|+++.+|... .++...+...+++..+++.. .+.+|+
T Consensus 224 sK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~-----------e~e~srr~ktefLiq~~~~~s~~~drvl 292 (428)
T KOG0740|consen 224 SKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDN-----------EHESSRRLKTEFLLQFDGKNSAPDDRVL 292 (428)
T ss_pred hhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCc-----------ccccchhhhhHHHhhhccccCCCCCeEE
Confidence 99999999999999999999999999999999999988543 23334455567777776653 356899
Q ss_pred EEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcC-CCccCHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 005611 324 FLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKM-SDSVDLSSYAKNLPGWTGARLAQLVQEAALV 402 (688)
Q Consensus 324 VIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~-~~~~dl~~la~~t~G~s~~dL~~lv~~A~~~ 402 (688)
||+|||+|+.+|.+++| ||.+.+++|+|+.+.|..+|+.++.+.+. -.+.|+..+++.|+|||+.||.++|++|+.-
T Consensus 293 vigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~ 370 (428)
T KOG0740|consen 293 VIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMG 370 (428)
T ss_pred EEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcC
Confidence 99999999999999999 99999999999999999999999977633 3456899999999999999999999999765
Q ss_pred HHHhCC-------------ccccHHHHHHHHHhhcc
Q 005611 403 AVRKGH-------------ESILSSDMDDAVDRLTV 425 (688)
Q Consensus 403 A~~~~~-------------~~I~~~di~~Al~~~~~ 425 (688)
-.+... ..++..|+..++..+..
T Consensus 371 p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~ 406 (428)
T KOG0740|consen 371 PLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKP 406 (428)
T ss_pred chhhcccchhhhhcchhccCCCCcchHHHHHHhhcc
Confidence 544322 34666677777665543
No 39
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=5.2e-20 Score=191.45 Aligned_cols=233 Identities=26% Similarity=0.395 Sum_probs=176.2
Q ss_pred CCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHHHHh
Q 005611 170 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLV 249 (688)
Q Consensus 170 ~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~~~~ 249 (688)
++-.|++|+-.......++++...-.+... .-.+-+++++|||||||||++|+-||+..|..+-.+.+.+.-- +-
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aTaNTK~----h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG 424 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIATANTKK----HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LG 424 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHhccccc----ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cc
Confidence 445599999999999999888665444432 2245578999999999999999999999999998888776422 12
Q ss_pred hhhhHHHHHHHHHHHhCCC-eEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEec
Q 005611 250 GVGSARIRDLFKRAKVNKP-SVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAAT 328 (688)
Q Consensus 250 g~~~~~~r~~f~~A~~~~p-~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaT 328 (688)
.++..++..+|..|...+. -+|||||+|+++..|... .+++.....+|.||-.-. ...+.++++.+|
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnkt----------ymSEaqRsaLNAlLfRTG--dqSrdivLvlAt 492 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKT----------YMSEAQRSALNALLFRTG--DQSRDIVLVLAT 492 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchh----------hhcHHHHHHHHHHHHHhc--ccccceEEEecc
Confidence 2345678899999987654 488999999999877542 256667788888875532 345678888899
Q ss_pred CCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCC----C-------------------ccC----HHHHH
Q 005611 329 NRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS----D-------------------SVD----LSSYA 381 (688)
Q Consensus 329 N~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~----~-------------------~~d----l~~la 381 (688)
|+|..+|.++-+ |+|.+++||+|..++|..++..|+++.-.. . ..+ +.+.|
T Consensus 493 NrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaA 570 (630)
T KOG0742|consen 493 NRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAA 570 (630)
T ss_pred CCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHH
Confidence 999999999999 999999999999999999999988763211 0 011 56778
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHH
Q 005611 382 KNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 421 (688)
Q Consensus 382 ~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al~ 421 (688)
+.|.||||++|..|+-.....+.-.....++...|++.++
T Consensus 571 kkTeGfSGREiakLva~vQAavYgsedcvLd~~lf~e~v~ 610 (630)
T KOG0742|consen 571 KKTEGFSGREIAKLVASVQAAVYGSEDCVLDEALFDERVD 610 (630)
T ss_pred HhccCCcHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHH
Confidence 9999999999999987665555444444555555555444
No 40
>CHL00181 cbbX CbbX; Provisional
Probab=99.84 E-value=5.1e-20 Score=193.32 Aligned_cols=212 Identities=17% Similarity=0.273 Sum_probs=156.0
Q ss_pred cccccccHHHHHHHHHHHHHhcChhhhhccCCCCC---ceEEEEcCCCChHHHHHHHHHHhc-------CCCEEEeeCch
Q 005611 174 FSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPP---HGVLLEGPPGCGKTLVAKAIAGEA-------GVPFYQMAGSE 243 (688)
Q Consensus 174 f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~---~gvLL~GppGtGKT~La~alA~~~-------~~~~~~v~~~~ 243 (688)
+++++|++++|+++++++.++..+..+...|..++ .+++|+||||||||++|+++|+.+ ..+++.++.++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 34799999999999999888666666667776554 358999999999999999999875 23689999999
Q ss_pred hHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEE
Q 005611 244 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 323 (688)
Q Consensus 244 ~~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~vi 323 (688)
+...+.|....+.+..|++|. ++||||||+|.+...+.+ .......++.|+..|+. ...+++
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~-------------~~~~~e~~~~L~~~me~--~~~~~~ 163 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNE-------------RDYGSEAIEILLQVMEN--QRDDLV 163 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCc-------------cchHHHHHHHHHHHHhc--CCCCEE
Confidence 999999988878888887764 469999999998653221 11123445667777763 235677
Q ss_pred EEEecCCCC-----cCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCC--CccC--HHH-HHhh--CCCC-CHH
Q 005611 324 FLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS--DSVD--LSS-YAKN--LPGW-TGA 390 (688)
Q Consensus 324 VIaaTN~~~-----~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~--~~~d--l~~-la~~--t~G~-s~~ 390 (688)
||++++... .++|++++ ||+.+|+|++|+.+++.+|++.++.+.... ++.. +.. +.+. .+.| +++
T Consensus 164 vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR 241 (287)
T CHL00181 164 VIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANAR 241 (287)
T ss_pred EEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHH
Confidence 888776422 34689999 999999999999999999999999765433 2211 112 2221 2333 489
Q ss_pred HHHHHHHHHHHHHHH
Q 005611 391 RLAQLVQEAALVAVR 405 (688)
Q Consensus 391 dL~~lv~~A~~~A~~ 405 (688)
++++++.+|...-..
T Consensus 242 ~vrn~ve~~~~~~~~ 256 (287)
T CHL00181 242 SVRNALDRARMRQAN 256 (287)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999888655433
No 41
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=2.3e-20 Score=208.61 Aligned_cols=195 Identities=21% Similarity=0.211 Sum_probs=149.9
Q ss_pred cccceeccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc-cccccccCCCCcccccc-
Q 005611 100 GILSKFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRS-KAEARVDGSTGVKFSDV- 177 (688)
Q Consensus 100 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~v~f~dV- 177 (688)
|++++.+|.+|.|.+++|+.|-..+...+..++.+++...++.++..|+|++++....... +........+.+.|+||
T Consensus 393 Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G~~~p~~~~G~IeF~~Vs 472 (716)
T KOG0058|consen 393 GGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTGTLAPDHLQGVIEFEDVS 472 (716)
T ss_pred ccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCCccccccccceEEEEEee
Confidence 4999999999999999999999999999999999999999999999999999987443332 22222246688999999
Q ss_pred cccHHH--HHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHH-------------------------
Q 005611 178 AGIDEA--VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG------------------------- 230 (688)
Q Consensus 178 ~G~~~~--k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~------------------------- 230 (688)
+.|..- ...++++ ++.++|++.+.|+||+|+||||++..+-+
T Consensus 473 FaYP~Rp~~~Vlk~l-----------sfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr 541 (716)
T KOG0058|consen 473 FAYPTRPDVPVLKNL-----------SFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLR 541 (716)
T ss_pred eecCCCCCchhhcCc-----------eeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHH
Confidence 666432 1233333 66789999999999999999999999988
Q ss_pred --------------------------------------hcCCCEEEeeCchhHHHHhhh------hhHHHHHHHHHHHhC
Q 005611 231 --------------------------------------EAGVPFYQMAGSEFVEVLVGV------GSARIRDLFKRAKVN 266 (688)
Q Consensus 231 --------------------------------------~~~~~~~~v~~~~~~~~~~g~------~~~~~r~~f~~A~~~ 266 (688)
.++++-|..+.++.+++.+|+ |+|++|.+++||..+
T Consensus 542 ~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr 621 (716)
T KOG0058|consen 542 RKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLR 621 (716)
T ss_pred HHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhc
Confidence 223343444445555555665 789999999999999
Q ss_pred CCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEE
Q 005611 267 KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLA 326 (688)
Q Consensus 267 ~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIa 326 (688)
+|+||+|||+++.++..++ ..+++. ++....+++|+|||
T Consensus 622 ~P~VLILDEATSALDaeSE------------------~lVq~a---L~~~~~~rTVlvIA 660 (716)
T KOG0058|consen 622 NPRVLILDEATSALDAESE------------------YLVQEA---LDRLMQGRTVLVIA 660 (716)
T ss_pred CCCEEEEechhhhcchhhH------------------HHHHHH---HHHhhcCCeEEEEe
Confidence 9999999999998766543 333333 33334558888885
No 42
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.84 E-value=1.3e-19 Score=188.48 Aligned_cols=212 Identities=18% Similarity=0.272 Sum_probs=154.7
Q ss_pred ccccccccHHHHHHHHHHHHHhcChhhhhccCCCCC---ceEEEEcCCCChHHHHHHHHHHhc-------CCCEEEeeCc
Q 005611 173 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPP---HGVLLEGPPGCGKTLVAKAIAGEA-------GVPFYQMAGS 242 (688)
Q Consensus 173 ~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~---~gvLL~GppGtGKT~La~alA~~~-------~~~~~~v~~~ 242 (688)
.+++++|++++|+.+++++.++.........|..++ .+++|+||||||||++|+++|+.+ ..+++.++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 467899999999999999988655444445555433 468999999999999999999864 3478889999
Q ss_pred hhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcE
Q 005611 243 EFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGV 322 (688)
Q Consensus 243 ~~~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~v 322 (688)
++...+.|+....++..|.+|. ++||||||+|.+....+ .......++.++..++.. ...+
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~--------------~~~~~~~i~~Ll~~~e~~--~~~~ 144 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGGE--------------KDFGKEAIDTLVKGMEDN--RNEF 144 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCCc--------------cchHHHHHHHHHHHHhcc--CCCE
Confidence 9999999999888999998864 46999999999864211 111234566777777643 3445
Q ss_pred EEEEecCCCC-----cCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccC-HHHHHh---------hCCCC
Q 005611 323 IFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAK---------NLPGW 387 (688)
Q Consensus 323 iVIaaTN~~~-----~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~d-l~~la~---------~t~G~ 387 (688)
++|++++..+ .++|++++ ||+..+++|.++.+++.+|++.++......-+.+ +..++. ....-
T Consensus 145 ~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~g 222 (261)
T TIGR02881 145 VLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFS 222 (261)
T ss_pred EEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCc
Confidence 6665554322 37889998 9999999999999999999999987654332212 222221 11123
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 005611 388 TGARLAQLVQEAALVAVR 405 (688)
Q Consensus 388 s~~dL~~lv~~A~~~A~~ 405 (688)
+++.+.+++..|......
T Consensus 223 n~R~~~n~~e~a~~~~~~ 240 (261)
T TIGR02881 223 NARYVRNIIEKAIRRQAV 240 (261)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 789999999988766543
No 43
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.83 E-value=9.9e-20 Score=191.20 Aligned_cols=209 Identities=17% Similarity=0.262 Sum_probs=158.4
Q ss_pred cccccHHHHHHHHHHHHHhcChhhhhccCCCC---CceEEEEcCCCChHHHHHHHHHHhcC-------CCEEEeeCchhH
Q 005611 176 DVAGIDEAVEELQELVRYLKNPELFDKMGIKP---PHGVLLEGPPGCGKTLVAKAIAGEAG-------VPFYQMAGSEFV 245 (688)
Q Consensus 176 dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~---~~gvLL~GppGtGKT~La~alA~~~~-------~~~~~v~~~~~~ 245 (688)
+++|++++|+++++++.++..++.+...|+.+ +.+++|+||||||||++|+++|+.+. .+++.++++++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 68999999999999999888877777788764 34799999999999999999998763 379999999998
Q ss_pred HHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEE
Q 005611 246 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 325 (688)
Q Consensus 246 ~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVI 325 (688)
..+.|....+.+..|++|. +++|||||++.+...+.+ ........+.|+..|+. ...+++||
T Consensus 103 ~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~~-------------~~~~~~~~~~Ll~~le~--~~~~~~vI 164 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDNE-------------RDYGQEAIEILLQVMEN--QRDDLVVI 164 (284)
T ss_pred HhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCCc-------------cchHHHHHHHHHHHHhc--CCCCEEEE
Confidence 8888988888888888764 479999999998643221 11123445667777763 33567888
Q ss_pred EecCCC--C---cCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccC-HHHHHhh--------CCCCCHHH
Q 005611 326 AATNRR--D---LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKN--------LPGWTGAR 391 (688)
Q Consensus 326 aaTN~~--~---~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~d-l~~la~~--------t~G~s~~d 391 (688)
++++.. + .++|++.+ ||...|+||+++.+++.+|++.++++....-+.+ ...+... .+| ++++
T Consensus 165 ~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~G-N~R~ 241 (284)
T TIGR02880 165 LAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFA-NARS 241 (284)
T ss_pred EeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCC-hHHH
Confidence 887643 3 25899999 9999999999999999999999998754321112 2223222 233 7999
Q ss_pred HHHHHHHHHHHHHH
Q 005611 392 LAQLVQEAALVAVR 405 (688)
Q Consensus 392 L~~lv~~A~~~A~~ 405 (688)
+++++..+......
T Consensus 242 lrn~ve~~~~~~~~ 255 (284)
T TIGR02880 242 IRNAIDRARLRQAN 255 (284)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998766544
No 44
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.82 E-value=1.1e-19 Score=167.99 Aligned_cols=130 Identities=46% Similarity=0.734 Sum_probs=113.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHHHHhhhhhHHHHHHHHHHHhCC-CeEEEEcccchhhhhhcCCccC
Q 005611 211 VLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNK-PSVIFIDEIDALATRRQGIFKD 289 (688)
Q Consensus 211 vLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~~~~g~~~~~~r~~f~~A~~~~-p~IL~LDEiD~l~~~~~~~~~~ 289 (688)
+||+||||||||++++.+|+.++.+++.++++++.+.+.+...+.++..|..+.... |+||+|||+|.+....+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~---- 76 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQP---- 76 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCST----
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccc----
Confidence 689999999999999999999999999999999988888889999999999999888 999999999999987621
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHhcCCCCC-CcEEEEEecCCCCcCCccccCCCccceeeeccC
Q 005611 290 TTDHLYNAATQERETTLNQLLIELDGFDTG-KGVIFLAATNRRDLLDPALLRPGRFDRKIRIRA 352 (688)
Q Consensus 290 ~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~-~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~ 352 (688)
.........++.++..++..... .+++||++||.++.++++++| +||+..|++|+
T Consensus 77 -------~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 77 -------SSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp -------SSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred -------ccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 13445566778888888877654 569999999999999999998 89999999874
No 45
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2.6e-19 Score=190.91 Aligned_cols=212 Identities=25% Similarity=0.334 Sum_probs=158.6
Q ss_pred CcccccccccHHHHHHHH-HHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHHHHh
Q 005611 171 GVKFSDVAGIDEAVEELQ-ELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLV 249 (688)
Q Consensus 171 ~v~f~dV~G~~~~k~~L~-~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~~~~ 249 (688)
+-+|+.++=-.+.|+++. ++.+|++..+-|++.|..=-+|.|||||||||||+++.|+|+.++..++-++.++...
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~--- 273 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL--- 273 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC---
Confidence 367888877777777755 5777899999999999998999999999999999999999999999999888766432
Q ss_pred hhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCC--cEEEEEe
Q 005611 250 GVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGK--GVIFLAA 327 (688)
Q Consensus 250 g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~--~viVIaa 327 (688)
... +|.++-.+ .+.+||+|+|||+..+-+........+ .......-++..||..+||+.+.. --|||.|
T Consensus 274 --n~d-Lr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~----~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFT 344 (457)
T KOG0743|consen 274 --DSD-LRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKEN----FEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFT 344 (457)
T ss_pred --cHH-HHHHHHhC--CCCcEEEEeeccccccccccccccccc----ccCCcceeehHHhhhhhccccccCCCceEEEEe
Confidence 222 66666553 345799999999987644321111000 000122357789999999997655 5788899
Q ss_pred cCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccCHHHHHhhCC--CCCHHHHHHHH
Q 005611 328 TNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLP--GWTGARLAQLV 396 (688)
Q Consensus 328 TN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~--G~s~~dL~~lv 396 (688)
||+++.|||||+||||+|.+|+++.-+.++-+.+++.++.... +..-+.++.+... ..||||+...+
T Consensus 345 TNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 345 TNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred cCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHH
Confidence 9999999999999999999999999999999999999986532 1112334443333 35899987653
No 46
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.3e-18 Score=175.07 Aligned_cols=238 Identities=21% Similarity=0.226 Sum_probs=171.5
Q ss_pred cccccccHHHHHHHHHHHHH-hcChhhhhccC-CCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCEEEeeCc
Q 005611 174 FSDVAGIDEAVEELQELVRY-LKNPELFDKMG-IKPPHGVLLEGPPGCGKTLVAKAIAGEA---------GVPFYQMAGS 242 (688)
Q Consensus 174 f~dV~G~~~~k~~L~~ii~~-l~~~~~~~~~g-~~~~~gvLL~GppGtGKT~La~alA~~~---------~~~~~~v~~~ 242 (688)
|+.++--...|++|-.++.. +...+...+-. +.-.+-+||+||||||||+|+|++|+.+ ....+.+++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 33444445677777766543 33332211111 2334569999999999999999999976 3467899999
Q ss_pred hhHHHHhhhhhHHHHHHHHHHHh-----CCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCC
Q 005611 243 EFVEVLVGVGSARIRDLFKRAKV-----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD 317 (688)
Q Consensus 243 ~~~~~~~g~~~~~~r~~f~~A~~-----~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~ 317 (688)
.+.++|.+++++.+...|.+... ..--.++|||+++++..|.+...+ .......+.+|.+|.++|.+.
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~-------~EpsDaIRvVNalLTQlDrlK 293 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSR-------NEPSDAIRVVNALLTQLDRLK 293 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcC-------CCCchHHHHHHHHHHHHHHhc
Confidence 99999999999999999887642 122367899999999887443222 133445678899999999999
Q ss_pred CCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcC-----C--------Ccc-----CHHH
Q 005611 318 TGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKM-----S--------DSV-----DLSS 379 (688)
Q Consensus 318 ~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~-----~--------~~~-----dl~~ 379 (688)
+..+|++++|+|-.+.+|.|+.+ |-|-+.++.+|+...+.+|++..+.++-- . ... ....
T Consensus 294 ~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~ 371 (423)
T KOG0744|consen 294 RYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNI 371 (423)
T ss_pred cCCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHH
Confidence 99999999999999999999999 99999999999999999999987754210 0 001 1122
Q ss_pred HHhh-CCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHh
Q 005611 380 YAKN-LPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDR 422 (688)
Q Consensus 380 la~~-t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al~~ 422 (688)
+... +.|+||+.|+.+=--|..... ....++.++|..|+-.
T Consensus 372 ~~~~~~~gLSGRtlrkLP~Laha~y~--~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 372 LIELSTVGLSGRTLRKLPLLAHAEYF--RTFTVDLSNFLLALLE 413 (423)
T ss_pred HHHHhhcCCccchHhhhhHHHHHhcc--CCCccChHHHHHHHHH
Confidence 2222 579999999987554443332 2257888888777643
No 47
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.77 E-value=7.7e-18 Score=166.60 Aligned_cols=192 Identities=24% Similarity=0.337 Sum_probs=129.8
Q ss_pred CcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHHHHhh
Q 005611 171 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVG 250 (688)
Q Consensus 171 ~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~~~~g 250 (688)
+-+|+|++|++..++.++-+++..+... .+..+++||||||+||||||+.+|++++.++...+++.+..
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~-------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k---- 88 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRG-------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK---- 88 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTT-------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S----
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcC-------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh----
Confidence 4589999999999999988777643221 23457999999999999999999999999999998865321
Q ss_pred hhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCC--------C----
Q 005611 251 VGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD--------T---- 318 (688)
Q Consensus 251 ~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~--------~---- 318 (688)
...+...+... ....||||||||.+....+ ..|+..|+... .
T Consensus 89 --~~dl~~il~~l--~~~~ILFIDEIHRlnk~~q----------------------e~LlpamEd~~idiiiG~g~~ar~ 142 (233)
T PF05496_consen 89 --AGDLAAILTNL--KEGDILFIDEIHRLNKAQQ----------------------EILLPAMEDGKIDIIIGKGPNARS 142 (233)
T ss_dssp --CHHHHHHHHT----TT-EEEECTCCC--HHHH----------------------HHHHHHHHCSEEEEEBSSSSS-BE
T ss_pred --HHHHHHHHHhc--CCCcEEEEechhhccHHHH----------------------HHHHHHhccCeEEEEeccccccce
Confidence 12233333332 3456999999999765432 33444444321 1
Q ss_pred ----CCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCcc-CHHHHHhhCCCCCHHHHH
Q 005611 319 ----GKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV-DLSSYAKNLPGWTGARLA 393 (688)
Q Consensus 319 ----~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~-dl~~la~~t~G~s~~dL~ 393 (688)
-+.+.+|+||++...|.++|++ ||....++..++.++..+|++......++.-+. ...++|+++.| +|+-..
T Consensus 143 ~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAn 219 (233)
T PF05496_consen 143 IRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIAN 219 (233)
T ss_dssp EEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHH
T ss_pred eeccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHH
Confidence 1347889999999999999999 999999999999999999999887776655333 37788999988 899888
Q ss_pred HHHHHHHHH
Q 005611 394 QLVQEAALV 402 (688)
Q Consensus 394 ~lv~~A~~~ 402 (688)
++++++...
T Consensus 220 rll~rvrD~ 228 (233)
T PF05496_consen 220 RLLRRVRDF 228 (233)
T ss_dssp HHHHHHCCC
T ss_pred HHHHHHHHH
Confidence 888876543
No 48
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=8.9e-18 Score=186.85 Aligned_cols=206 Identities=27% Similarity=0.414 Sum_probs=171.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhc
Q 005611 205 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQ 284 (688)
Q Consensus 205 ~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~ 284 (688)
.+....+||+|+||||||++++++|+++|.+++.++|.++.....+..+.++...|.+|+...|+|||+-++|.++.++.
T Consensus 428 ~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~d 507 (953)
T KOG0736|consen 428 LTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQD 507 (953)
T ss_pred cccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCC
Confidence 34455799999999999999999999999999999999999888888899999999999999999999999999985543
Q ss_pred CCccCcchhhhhhhhHHHHHHHHHHHHHhcCC-CCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHH
Q 005611 285 GIFKDTTDHLYNAATQERETTLNQLLIELDGF-DTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILK 363 (688)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~-~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~ 363 (688)
++ .+......++.++. ++-+ .+..+++||++|+..+.+++.+++ -|-..|.++.|+.++|.+||+
T Consensus 508 gg-----------ed~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq 573 (953)
T KOG0736|consen 508 GG-----------EDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQ 573 (953)
T ss_pred Cc-----------hhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHH
Confidence 31 22333444555554 2222 356789999999999999999998 778899999999999999999
Q ss_pred HHhccCcCCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHH---HhC-----------------CccccHHHHHHHHHhh
Q 005611 364 IHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAV---RKG-----------------HESILSSDMDDAVDRL 423 (688)
Q Consensus 364 ~~l~~~~~~~~~dl~~la~~t~G~s~~dL~~lv~~A~~~A~---~~~-----------------~~~I~~~di~~Al~~~ 423 (688)
.++....+..++.+..++.+|+||+.+++..++.++-..+. .+. ...++++||..|+.+.
T Consensus 574 ~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~ 653 (953)
T KOG0736|consen 574 WYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRL 653 (953)
T ss_pred HHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHH
Confidence 99999999999999999999999999999999877622221 111 1468999999999966
Q ss_pred c
Q 005611 424 T 424 (688)
Q Consensus 424 ~ 424 (688)
.
T Consensus 654 ~ 654 (953)
T KOG0736|consen 654 Q 654 (953)
T ss_pred H
Confidence 4
No 49
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.76 E-value=2.1e-17 Score=177.65 Aligned_cols=217 Identities=24% Similarity=0.292 Sum_probs=160.7
Q ss_pred CcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHHHHhh
Q 005611 171 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVG 250 (688)
Q Consensus 171 ~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~~~~g 250 (688)
+.+|++++|+++.++.+..++...+.+ ..++.+++|+||||||||++|+++|++++.++...+++.+..
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~---- 89 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK---- 89 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC----
Confidence 458999999999999998887654322 135668999999999999999999999999887776654321
Q ss_pred hhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHh------cCCC-------
Q 005611 251 VGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIEL------DGFD------- 317 (688)
Q Consensus 251 ~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~l------d~~~------- 317 (688)
...+...+.. ...+++|||||+|.+..... ..+..++... +.-.
T Consensus 90 --~~~l~~~l~~--l~~~~vl~IDEi~~l~~~~~-------------------e~l~~~~e~~~~~~~l~~~~~~~~~~~ 146 (328)
T PRK00080 90 --PGDLAAILTN--LEEGDVLFIDEIHRLSPVVE-------------------EILYPAMEDFRLDIMIGKGPAARSIRL 146 (328)
T ss_pred --hHHHHHHHHh--cccCCEEEEecHhhcchHHH-------------------HHHHHHHHhcceeeeeccCccccceee
Confidence 1223333332 24578999999998754321 1112222211 0000
Q ss_pred CCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCc-cCHHHHHhhCCCCCHHHHHHHH
Q 005611 318 TGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSYAKNLPGWTGARLAQLV 396 (688)
Q Consensus 318 ~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~-~dl~~la~~t~G~s~~dL~~lv 396 (688)
.-..+.+|++||++..+++++++ ||...+++++|+.+++.+|++..+...+..-+ ..+..+++.+.| +++.+.+++
T Consensus 147 ~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l 223 (328)
T PRK00080 147 DLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLL 223 (328)
T ss_pred cCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHH
Confidence 11347889999999999999988 99999999999999999999988876654422 237788888888 789999999
Q ss_pred HHHHHHHHHhCCccccHHHHHHHHHhhc
Q 005611 397 QEAALVAVRKGHESILSSDMDDAVDRLT 424 (688)
Q Consensus 397 ~~A~~~A~~~~~~~I~~~di~~Al~~~~ 424 (688)
+.+...+..++...|+.+++..+++...
T Consensus 224 ~~~~~~a~~~~~~~I~~~~v~~~l~~~~ 251 (328)
T PRK00080 224 RRVRDFAQVKGDGVITKEIADKALDMLG 251 (328)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhC
Confidence 9998888777778899999999997653
No 50
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.76 E-value=3.7e-18 Score=197.56 Aligned_cols=174 Identities=20% Similarity=0.155 Sum_probs=135.2
Q ss_pred CcccceeccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc-c-ccccccCCCCccccc
Q 005611 99 GGILSKFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRS-K-AEARVDGSTGVKFSD 176 (688)
Q Consensus 99 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-~-~~~~~~~~~~v~f~d 176 (688)
-|.+.+.+|.+|.|.++||.++...+.-|+..++.+...++....+..|..++++....... + ........+.++|++
T Consensus 397 ~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~n 476 (709)
T COG2274 397 FGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFEN 476 (709)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEEEEE
Confidence 45899999999999999999999999999999999999999999999999999998555333 2 234456678899999
Q ss_pred c-cccHHHH-HHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc----------------------
Q 005611 177 V-AGIDEAV-EELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---------------------- 232 (688)
Q Consensus 177 V-~G~~~~k-~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~---------------------- 232 (688)
| +.|.... ..|+++ ++.+++++.+.|+|++|||||||+|.+.+-.
T Consensus 477 vsf~y~~~~~~vL~~i-----------sL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~l 545 (709)
T COG2274 477 VSFRYGPDDPPVLEDL-----------SLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASL 545 (709)
T ss_pred EEEEeCCCCcchhhce-----------eEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHH
Confidence 9 5554331 344443 6678888889999999999999999999811
Q ss_pred -----------------------------------------CCCEEEeeCchhHHHHhhh------hhHHHHHHHHHHHh
Q 005611 233 -----------------------------------------GVPFYQMAGSEFVEVLVGV------GSARIRDLFKRAKV 265 (688)
Q Consensus 233 -----------------------------------------~~~~~~v~~~~~~~~~~g~------~~~~~r~~f~~A~~ 265 (688)
+++-+..+.+..+++.+|+ |+|++|.+++||..
T Consensus 546 R~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl 625 (709)
T COG2274 546 RRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALL 625 (709)
T ss_pred HhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhc
Confidence 2222222233333333443 78999999999999
Q ss_pred CCCeEEEEcccchhhhhh
Q 005611 266 NKPSVIFIDEIDALATRR 283 (688)
Q Consensus 266 ~~p~IL~LDEiD~l~~~~ 283 (688)
.+|.||++||+++..+..
T Consensus 626 ~~P~ILlLDEaTSaLD~~ 643 (709)
T COG2274 626 SKPKILLLDEATSALDPE 643 (709)
T ss_pred cCCCEEEEeCcccccCHh
Confidence 999999999999865543
No 51
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.76 E-value=2.1e-17 Score=175.78 Aligned_cols=214 Identities=23% Similarity=0.299 Sum_probs=155.0
Q ss_pred ccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHHHHhhhh
Q 005611 173 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVG 252 (688)
Q Consensus 173 ~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~~~~g~~ 252 (688)
+|++++|+++.++.|+.++...... ...+.+++|+||||||||++|+++|++++.++....++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 6899999999999998887643221 134567999999999999999999999998877665543211
Q ss_pred hHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhc-------CC------CCC
Q 005611 253 SARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD-------GF------DTG 319 (688)
Q Consensus 253 ~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld-------~~------~~~ 319 (688)
...+...+.. ...+.+|||||++.+.+...+ .+..++.... +. ...
T Consensus 69 ~~~l~~~l~~--~~~~~vl~iDEi~~l~~~~~e-------------------~l~~~~~~~~~~~v~~~~~~~~~~~~~~ 127 (305)
T TIGR00635 69 PGDLAAILTN--LEEGDVLFIDEIHRLSPAVEE-------------------LLYPAMEDFRLDIVIGKGPSARSVRLDL 127 (305)
T ss_pred chhHHHHHHh--cccCCEEEEehHhhhCHHHHH-------------------HhhHHHhhhheeeeeccCccccceeecC
Confidence 1122222222 245679999999997644221 1111111100 00 012
Q ss_pred CcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCC-ccCHHHHHhhCCCCCHHHHHHHHHH
Q 005611 320 KGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLSSYAKNLPGWTGARLAQLVQE 398 (688)
Q Consensus 320 ~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~-~~dl~~la~~t~G~s~~dL~~lv~~ 398 (688)
..+++|++||++..+++++++ ||...+.+++|+.+++.++++..+......- +..+..+++.+.| +++.+.++++.
T Consensus 128 ~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G-~pR~~~~ll~~ 204 (305)
T TIGR00635 128 PPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRG-TPRIANRLLRR 204 (305)
T ss_pred CCeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-CcchHHHHHHH
Confidence 347889999999999999998 9998999999999999999998887554432 2236788888888 67888999999
Q ss_pred HHHHHHHhCCccccHHHHHHHHHhh
Q 005611 399 AALVAVRKGHESILSSDMDDAVDRL 423 (688)
Q Consensus 399 A~~~A~~~~~~~I~~~di~~Al~~~ 423 (688)
+...|...+...|+.+++..+++.+
T Consensus 205 ~~~~a~~~~~~~it~~~v~~~l~~l 229 (305)
T TIGR00635 205 VRDFAQVRGQKIINRDIALKALEML 229 (305)
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 8888877677789999999999874
No 52
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=2.8e-17 Score=181.30 Aligned_cols=241 Identities=21% Similarity=0.232 Sum_probs=178.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc----CCCEEEeeCchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhh
Q 005611 207 PPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATR 282 (688)
Q Consensus 207 ~~~gvLL~GppGtGKT~La~alA~~~----~~~~~~v~~~~~~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~ 282 (688)
.+.+++|.||+|+|||.|+++++.++ .+++..++|+.+.........+-++..|..|.+++|+||+||++|.+...
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~ 509 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASA 509 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhcc
Confidence 45579999999999999999999987 45677889998877666666667889999999999999999999999873
Q ss_pred hcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHH
Q 005611 283 RQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEIL 362 (688)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il 362 (688)
.++ .+++.+ .........+++++...- ..++.+.|||+.+....++|.|.+|++|+.++.++.|+..+|.+||
T Consensus 510 s~~-e~~q~~----~~~~rla~flnqvi~~y~--~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL 582 (952)
T KOG0735|consen 510 SSN-ENGQDG----VVSERLAAFLNQVIKIYL--KRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEIL 582 (952)
T ss_pred Ccc-cCCcch----HHHHHHHHHHHHHHHHHH--ccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHH
Confidence 221 111111 122223344555554432 3456689999999999999999999999999999999999999999
Q ss_pred HHHhccCcCC-CccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh----CCccccHHHHHHHHHhhccCCCccCccccCC
Q 005611 363 KIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRK----GHESILSSDMDDAVDRLTVGPKRRGIELGNQ 437 (688)
Q Consensus 363 ~~~l~~~~~~-~~~dl~~la~~t~G~s~~dL~~lv~~A~~~A~~~----~~~~I~~~di~~Al~~~~~g~~~~~~~~~~~ 437 (688)
+..+++.... ..-|+.-++..|+||...|+.-++.+|...|..+ +.+.++.++|.++++...+-.-+ .......
T Consensus 583 ~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~P~aLR-~ik~~k~ 661 (952)
T KOG0735|consen 583 TTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFVPLALR-GIKLVKS 661 (952)
T ss_pred HHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcChHHhh-hcccccc
Confidence 9999775522 2224555999999999999999999999888732 33478999999999987653222 1111111
Q ss_pred --cch--hHHHHHHHHHHHHHH
Q 005611 438 --GQS--RRAATEVGVAMISHL 455 (688)
Q Consensus 438 --~~~--~ia~hE~GhAvv~~~ 455 (688)
.++ .-..||+-.++-..+
T Consensus 662 tgi~w~digg~~~~k~~l~~~i 683 (952)
T KOG0735|consen 662 TGIRWEDIGGLFEAKKVLEEVI 683 (952)
T ss_pred CCCCceecccHHHHHHHHHHHH
Confidence 122 235677766665543
No 53
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.73 E-value=1.5e-16 Score=160.18 Aligned_cols=217 Identities=25% Similarity=0.327 Sum_probs=170.6
Q ss_pred CcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHHHHhh
Q 005611 171 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVG 250 (688)
Q Consensus 171 ~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~~~~g 250 (688)
+-+|+|.+|++++|+.|+-++..-+... ....++||+||||.||||||+.+|++++..+-..+++.+..
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~-------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK---- 90 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRG-------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK---- 90 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcC-------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC----
Confidence 5689999999999999998887644322 34458999999999999999999999999999988876532
Q ss_pred hhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCC--------CC----
Q 005611 251 VGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF--------DT---- 318 (688)
Q Consensus 251 ~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~--------~~---- 318 (688)
...+-.++.. ...-+||||||||++.+.-. .. |.-.|+.+ ..
T Consensus 91 --~gDlaaiLt~--Le~~DVLFIDEIHrl~~~vE-------------------E~---LYpaMEDf~lDI~IG~gp~Ars 144 (332)
T COG2255 91 --PGDLAAILTN--LEEGDVLFIDEIHRLSPAVE-------------------EV---LYPAMEDFRLDIIIGKGPAARS 144 (332)
T ss_pred --hhhHHHHHhc--CCcCCeEEEehhhhcChhHH-------------------HH---hhhhhhheeEEEEEccCCccce
Confidence 1223333333 23457999999999875432 22 22223322 11
Q ss_pred ----CCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCcc-CHHHHHhhCCCCCHHHHH
Q 005611 319 ----GKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV-DLSSYAKNLPGWTGARLA 393 (688)
Q Consensus 319 ----~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~-dl~~la~~t~G~s~~dL~ 393 (688)
-..+-+|+||.+...|...|+. ||....++..++.++..+|++.....+.+.-+. ...++|+++.| +|+=..
T Consensus 145 v~ldLppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAn 221 (332)
T COG2255 145 IRLDLPPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIAN 221 (332)
T ss_pred EeccCCCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHH
Confidence 1347889999999999999999 999999999999999999999988777665333 37789999988 899999
Q ss_pred HHHHHHHHHHHHhCCccccHHHHHHHHHhhccCC
Q 005611 394 QLVQEAALVAVRKGHESILSSDMDDAVDRLTVGP 427 (688)
Q Consensus 394 ~lv~~A~~~A~~~~~~~I~~~di~~Al~~~~~g~ 427 (688)
+++++....|.-++...|+.+-...|++.+....
T Consensus 222 RLLrRVRDfa~V~~~~~I~~~ia~~aL~~L~Vd~ 255 (332)
T COG2255 222 RLLRRVRDFAQVKGDGDIDRDIADKALKMLDVDE 255 (332)
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHhCccc
Confidence 9999999999989999999999999999887653
No 54
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=8.2e-16 Score=174.43 Aligned_cols=219 Identities=44% Similarity=0.726 Sum_probs=194.7
Q ss_pred hcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEE
Q 005611 194 LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFI 273 (688)
Q Consensus 194 l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~~~~g~~~~~~r~~f~~A~~~~p~IL~L 273 (688)
+..++.++.++..++++++++||||+|||+++++++.+ +..++.+++++...++.|....+.+..|..+....|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 34566777889999999999999999999999999999 66668889999999999999999999999999999999999
Q ss_pred cccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCC
Q 005611 274 DEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAP 353 (688)
Q Consensus 274 DEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~P 353 (688)
||+|.+.+.+... ..........+++..++++.... +++++.||++..+++++++|+||++.+.++.|
T Consensus 83 d~~~~~~~~~~~~-----------~~~~~~~v~~~l~~~~d~~~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (494)
T COG0464 83 DEIDALAPKRSSD-----------QGEVERRVVAQLLALMDGLKRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLP 150 (494)
T ss_pred chhhhcccCcccc-----------ccchhhHHHHHHHHhcccccCCc-eEEEeecCCccccChhHhCccccceeeecCCC
Confidence 9999999887651 22334566788888888888445 99999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHhccCcCCCccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC------CccccHHHHHHHHHhhcc
Q 005611 354 NAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKG------HESILSSDMDDAVDRLTV 425 (688)
Q Consensus 354 d~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~G~s~~dL~~lv~~A~~~A~~~~------~~~I~~~di~~Al~~~~~ 425 (688)
+...+.+|+..+........+.+...++..+.|++++++..++.++...+.++. ...++.+++.++++++..
T Consensus 151 ~~~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (494)
T COG0464 151 DEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLP 228 (494)
T ss_pred CHHHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCc
Confidence 999999999999988888888899999999999999999999999998888875 235889999999999865
No 55
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.70 E-value=1.7e-16 Score=187.27 Aligned_cols=224 Identities=19% Similarity=0.275 Sum_probs=161.4
Q ss_pred CcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEee
Q 005611 171 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMA 240 (688)
Q Consensus 171 ~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~----------~~~~~~v~ 240 (688)
+-++++++|.++..+.+.+++.. +...+++|+||||||||++++++|+.. +..++.++
T Consensus 178 ~~~l~~~igr~~ei~~~~~~L~~------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 178 NGKIDPLIGREDELERTIQVLCR------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred cCCCCcccCcHHHHHHHHHHHhc------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 34678999999888776555321 234578999999999999999999987 67788998
Q ss_pred CchhH--HHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCC
Q 005611 241 GSEFV--EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT 318 (688)
Q Consensus 241 ~~~~~--~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~ 318 (688)
++.+. ..+.|+.+++++..|+.+....|+||||||+|.+.+......++ .. ..+.|...+.
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~----------~~---~~~~L~~~l~---- 308 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGS----------MD---ASNLLKPALS---- 308 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCcc----------HH---HHHHHHHHHh----
Confidence 88877 46788889999999999987789999999999998664321110 01 1122333332
Q ss_pred CCcEEEEEecCCCC-----cCCccccCCCccceeeeccCCChhhHHHHHHHHhccCc----CC-CccCHHHHHhhCCCC-
Q 005611 319 GKGVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVK----MS-DSVDLSSYAKNLPGW- 387 (688)
Q Consensus 319 ~~~viVIaaTN~~~-----~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~----~~-~~~dl~~la~~t~G~- 387 (688)
+..+.+|++||..+ ..|+++.| ||. .|+++.|+.+++.+|++....... +. .+..+..++..+..|
T Consensus 309 ~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi 385 (731)
T TIGR02639 309 SGKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYI 385 (731)
T ss_pred CCCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhccc
Confidence 46789999999743 57999999 997 799999999999999997665421 11 222355555555444
Q ss_pred ----CHHHHHHHHHHHHHHHHHh----CCccccHHHHHHHHHhhccC
Q 005611 388 ----TGARLAQLVQEAALVAVRK----GHESILSSDMDDAVDRLTVG 426 (688)
Q Consensus 388 ----s~~dL~~lv~~A~~~A~~~----~~~~I~~~di~~Al~~~~~g 426 (688)
-|.-...++++|+.....+ .+..|+.+|+..++.+...-
T Consensus 386 ~~r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~tgi 432 (731)
T TIGR02639 386 NDRFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMAHI 432 (731)
T ss_pred ccccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHhCC
Confidence 3455567788877654322 23469999999999987543
No 56
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.69 E-value=2.6e-16 Score=186.73 Aligned_cols=163 Identities=31% Similarity=0.418 Sum_probs=122.5
Q ss_pred cccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHH---------
Q 005611 176 DVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE--------- 246 (688)
Q Consensus 176 dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~--------- 246 (688)
+++|++++++.+.+++...... +...+..++|+||||||||++|+++|+.++.+++.+++....+
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~ 394 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRR 394 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCC
Confidence 4799999999998876642211 1123347999999999999999999999999999997654322
Q ss_pred HHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcC-----CC----
Q 005611 247 VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDG-----FD---- 317 (688)
Q Consensus 247 ~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~-----~~---- 317 (688)
.|.|....++...|..+...+| ||+|||+|.+....++ + ..+.|+..+|. +.
T Consensus 395 ~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~---~---------------~~~aLl~~ld~~~~~~f~d~~~ 455 (775)
T TIGR00763 395 TYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG---D---------------PASALLEVLDPEQNNAFSDHYL 455 (775)
T ss_pred ceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC---C---------------HHHHHHHhcCHHhcCccccccC
Confidence 3556666677788888876666 8999999999854321 1 01334444432 11
Q ss_pred ----CCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHh
Q 005611 318 ----TGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHA 366 (688)
Q Consensus 318 ----~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l 366 (688)
..+++++|+|||.++.+++++++ ||+ .|+++.|+.+++.+|++.++
T Consensus 456 ~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 456 DVPFDLSKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred CceeccCCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 12578999999999999999999 995 78999999999999998876
No 57
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.68 E-value=4.6e-16 Score=181.70 Aligned_cols=224 Identities=21% Similarity=0.298 Sum_probs=159.7
Q ss_pred cccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEeeC
Q 005611 172 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMAG 241 (688)
Q Consensus 172 v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~----------~~~~~~v~~ 241 (688)
=+++.++|.++....+.+++.. +...+++|+||||||||++|+.++... ++.++..+.
T Consensus 183 g~~~~liGR~~ei~~~i~iL~r------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 183 GGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCCcCcCCCHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 3567889999888777766443 234568999999999999999999864 445566555
Q ss_pred chhH--HHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCC
Q 005611 242 SEFV--EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTG 319 (688)
Q Consensus 242 ~~~~--~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~ 319 (688)
..+. ..+.|+.+.+++.+|..+....++||||||+|.+.+.+.... ...+...++..++ .+
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~----------g~~d~~nlLkp~L-------~~ 313 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASG----------GQVDAANLIKPLL-------SS 313 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCC----------cHHHHHHHHHHHH-------hC
Confidence 5544 346778888999999988888889999999999987653211 1111122222222 34
Q ss_pred CcEEEEEecCCCC-----cCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccCHHHH-----Hhh-----C
Q 005611 320 KGVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSY-----AKN-----L 384 (688)
Q Consensus 320 ~~viVIaaTN~~~-----~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~dl~~l-----a~~-----t 384 (688)
..+.+|++||.++ ..|++|.| ||+ .|+++.|+.+++.+||+.+..+.....++++.+. +.. .
T Consensus 314 g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~ 390 (758)
T PRK11034 314 GKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYIN 390 (758)
T ss_pred CCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhcccc
Confidence 6799999999865 47999999 996 7999999999999999988766554444443222 222 2
Q ss_pred CCCCHHHHHHHHHHHHHHHH----HhCCccccHHHHHHHHHhhccCC
Q 005611 385 PGWTGARLAQLVQEAALVAV----RKGHESILSSDMDDAVDRLTVGP 427 (688)
Q Consensus 385 ~G~s~~dL~~lv~~A~~~A~----~~~~~~I~~~di~~Al~~~~~g~ 427 (688)
..+-|.....++.+|+.... .+.+..++.+|+.+.+.+...-+
T Consensus 391 ~r~lPdKaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~tgip 437 (758)
T PRK11034 391 DRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIP 437 (758)
T ss_pred CccChHHHHHHHHHHHHhhccCcccccccccChhhHHHHHHHHhCCC
Confidence 34457788899999986543 12345689999999988876544
No 58
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.67 E-value=6.6e-17 Score=171.82 Aligned_cols=194 Identities=18% Similarity=0.175 Sum_probs=156.4
Q ss_pred ccceeccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc--cccccccCCCCcccccc-
Q 005611 101 ILSKFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRS--KAEARVDGSTGVKFSDV- 177 (688)
Q Consensus 101 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~v~f~dV- 177 (688)
.|++..+.+|.|+++-|.+|+.++-.|+..++.+++..|+..--.++.++++++...... ++.......+++.|++|
T Consensus 465 aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvt 544 (790)
T KOG0056|consen 465 AYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVT 544 (790)
T ss_pred eeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeE
Confidence 678889999999999999999999999999999999999999999999999988554443 34444556789999999
Q ss_pred cccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc-------------------------
Q 005611 178 AGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA------------------------- 232 (688)
Q Consensus 178 ~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~------------------------- 232 (688)
++|++-|..|+++ ++.+.+++.+.|+||+|.||||+.|.+.+-.
T Consensus 545 F~Y~p~k~vl~di-----------sF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~ 613 (790)
T KOG0056|consen 545 FAYDPGKPVLSDI-----------SFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSS 613 (790)
T ss_pred EecCCCCceeecc-----------eEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHh
Confidence 9999999888887 7778899999999999999999999999811
Q ss_pred --------------------------------------CCCEEEeeCchhHHHHhhh------hhHHHHHHHHHHHhCCC
Q 005611 233 --------------------------------------GVPFYQMAGSEFVEVLVGV------GSARIRDLFKRAKVNKP 268 (688)
Q Consensus 233 --------------------------------------~~~~~~v~~~~~~~~~~g~------~~~~~r~~f~~A~~~~p 268 (688)
+.+--....++.+++.+|+ |++++|.+++++..++|
T Consensus 614 IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P 693 (790)
T KOG0056|consen 614 IGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAP 693 (790)
T ss_pred cCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCC
Confidence 1222223345555556665 77899999999999999
Q ss_pred eEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEE
Q 005611 269 SVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLA 326 (688)
Q Consensus 269 ~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIa 326 (688)
+||++||+++..+...+ .++...+.++..+++.+|||
T Consensus 694 ~iIlLDEATSALDT~tE---------------------R~IQaaL~rlca~RTtIVvA 730 (790)
T KOG0056|consen 694 SIILLDEATSALDTNTE---------------------RAIQAALARLCANRTTIVVA 730 (790)
T ss_pred cEEEEcchhhhcCCccH---------------------HHHHHHHHHHhcCCceEEEe
Confidence 99999999998876433 33444445556677777775
No 59
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.66 E-value=5.8e-16 Score=177.26 Aligned_cols=172 Identities=16% Similarity=0.143 Sum_probs=122.7
Q ss_pred cccceeccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccc----ccccccCCCCcccc
Q 005611 100 GILSKFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRSK----AEARVDGSTGVKFS 175 (688)
Q Consensus 100 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~v~f~ 175 (688)
|++.+.+|.+|.|.+.+++.|...+..|+..+..++..++....+..|+.++++..+..... ..........+.|+
T Consensus 259 g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~ 338 (529)
T TIGR02868 259 GGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELR 338 (529)
T ss_pred HHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEE
Confidence 45667789999999999999999999999999999999999999999988887653321110 00111223468999
Q ss_pred cc-cccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC--EEEeeC-----------
Q 005611 176 DV-AGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--FYQMAG----------- 241 (688)
Q Consensus 176 dV-~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~--~~~v~~----------- 241 (688)
|| +.|++.+..|+++ ++.+++++.+.|+||+|+|||||++.+++..... -+.+++
T Consensus 339 ~vsf~Y~~~~~vL~~i-----------sl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr 407 (529)
T TIGR02868 339 DLSFGYPGSPPVLDGV-----------SLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELR 407 (529)
T ss_pred EEEEecCCCCceeecc-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHH
Confidence 98 7775432233333 6678889999999999999999999999843110 011100
Q ss_pred -------------------------------------------------chhHHHHhhh------hhHHHHHHHHHHHhC
Q 005611 242 -------------------------------------------------SEFVEVLVGV------GSARIRDLFKRAKVN 266 (688)
Q Consensus 242 -------------------------------------------------~~~~~~~~g~------~~~~~r~~f~~A~~~ 266 (688)
++.+++.+|+ +++++|..++||..+
T Consensus 408 ~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~ 487 (529)
T TIGR02868 408 RRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLA 487 (529)
T ss_pred hheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhc
Confidence 0011112222 688999999999999
Q ss_pred CCeEEEEcccchhhhh
Q 005611 267 KPSVIFIDEIDALATR 282 (688)
Q Consensus 267 ~p~IL~LDEiD~l~~~ 282 (688)
+|+|+++||+++-.+.
T Consensus 488 ~~~iliLDE~TSaLD~ 503 (529)
T TIGR02868 488 DAPILLLDEPTEHLDA 503 (529)
T ss_pred CCCEEEEeCCcccCCH
Confidence 9999999999986544
No 60
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.66 E-value=1.1e-15 Score=160.87 Aligned_cols=205 Identities=25% Similarity=0.437 Sum_probs=140.8
Q ss_pred CCcccccccccHHHHHH---HHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHH
Q 005611 170 TGVKFSDVAGIDEAVEE---LQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 246 (688)
Q Consensus 170 ~~v~f~dV~G~~~~k~~---L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~ 246 (688)
.+-++++++|++....+ |++.+. . ..-.+++|||||||||||+|+.||+..+.+|..++...
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v~---~---------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~--- 83 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAVE---A---------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT--- 83 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHHh---c---------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc---
Confidence 35689999999877643 434332 1 22347899999999999999999999999999998743
Q ss_pred HHhhhhhHHHHHHHHHHHhCC----CeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcE
Q 005611 247 VLVGVGSARIRDLFKRAKVNK----PSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGV 322 (688)
Q Consensus 247 ~~~g~~~~~~r~~f~~A~~~~----p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~v 322 (688)
.+.+.+|..+++|+... ..||||||++.+...++ ..||-.++ +..+
T Consensus 84 ----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQ----------------------D~lLp~vE----~G~i 133 (436)
T COG2256 84 ----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQ----------------------DALLPHVE----NGTI 133 (436)
T ss_pred ----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhh----------------------hhhhhhhc----CCeE
Confidence 34577899999985432 46999999999865543 34444443 5677
Q ss_pred EEEEec-CCCC-cCCccccCCCccceeeeccCCChhhHHHHHHHHhcc--CcCC------CccCHHHHHhhCCCCCHHHH
Q 005611 323 IFLAAT-NRRD-LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASK--VKMS------DSVDLSSYAKNLPGWTGARL 392 (688)
Q Consensus 323 iVIaaT-N~~~-~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~--~~~~------~~~dl~~la~~t~G~s~~dL 392 (688)
++|+|| .+|. .+.++|++ | .+++++.+.+.++..++++..+.. .++. ++.-...++..+.| .++..
T Consensus 134 ilIGATTENPsF~ln~ALlS--R-~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G-D~R~a 209 (436)
T COG2256 134 ILIGATTENPSFELNPALLS--R-ARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG-DARRA 209 (436)
T ss_pred EEEeccCCCCCeeecHHHhh--h-hheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc-hHHHH
Confidence 777665 3454 79999999 6 468899999999999999874422 2333 12225566776666 44555
Q ss_pred HHHHHHHHHHHHHhCCccccHHHHHHHHHhhcc
Q 005611 393 AQLVQEAALVAVRKGHESILSSDMDDAVDRLTV 425 (688)
Q Consensus 393 ~~lv~~A~~~A~~~~~~~I~~~di~~Al~~~~~ 425 (688)
-+++..+...+ +.+. .++.+++++.+.+...
T Consensus 210 LN~LE~~~~~~-~~~~-~~~~~~l~~~l~~~~~ 240 (436)
T COG2256 210 LNLLELAALSA-EPDE-VLILELLEEILQRRSA 240 (436)
T ss_pred HHHHHHHHHhc-CCCc-ccCHHHHHHHHhhhhh
Confidence 55555555444 2222 4457888887776543
No 61
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.65 E-value=7.8e-15 Score=162.30 Aligned_cols=241 Identities=20% Similarity=0.241 Sum_probs=158.1
Q ss_pred CCCccccc-ccccHHH--HHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEee
Q 005611 169 STGVKFSD-VAGIDEA--VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMA 240 (688)
Q Consensus 169 ~~~v~f~d-V~G~~~~--k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~-----~~~~~~v~ 240 (688)
.+..+|++ ++|.+.. ...++++ ...+. .....++|+||||+|||+|++++++++ +..+++++
T Consensus 104 ~~~~tfd~fi~g~~n~~a~~~~~~~---~~~~~-------~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 104 NPKYTFDNFVVGKSNRLAHAAALAV---AENPG-------KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CCCCcccccccCCcHHHHHHHHHHH---HhCcC-------ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 35678999 5665432 2222222 22221 234568999999999999999999876 57788999
Q ss_pred CchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q 005611 241 GSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGK 320 (688)
Q Consensus 241 ~~~~~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~ 320 (688)
+.++...+...........|... ...+++|+|||+|.+.+++. ...+ +..++..+ ....
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlLiiDDi~~l~~~~~-------------~~~~----l~~~~n~~---~~~~ 232 (405)
T TIGR00362 174 SEKFTNDFVNALRNNKMEEFKEK-YRSVDLLLIDDIQFLAGKER-------------TQEE----FFHTFNAL---HENG 232 (405)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHH-HHhCCEEEEehhhhhcCCHH-------------HHHH----HHHHHHHH---HHCC
Confidence 88887665443221111222221 23467999999998864421 1111 22222222 1223
Q ss_pred cEEEEEecCCCCc---CCccccCCCccc--eeeeccCCChhhHHHHHHHHhccCcCCC-ccCHHHHHhhCCCCCHHHHHH
Q 005611 321 GVIFLAATNRRDL---LDPALLRPGRFD--RKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLSSYAKNLPGWTGARLAQ 394 (688)
Q Consensus 321 ~viVIaaTN~~~~---Ld~aL~r~gRf~--~~I~i~~Pd~~eR~~Il~~~l~~~~~~~-~~dl~~la~~t~G~s~~dL~~ 394 (688)
..+||+++..|.. +++.+++ ||. ..+++++|+.++|.+|++..+...+..- +..+..+|.+..+ +.++|+.
T Consensus 233 ~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~ 309 (405)
T TIGR00362 233 KQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEG 309 (405)
T ss_pred CCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHH
Confidence 3456666555654 5678888 885 4899999999999999999987665442 2237778888776 8999999
Q ss_pred HHHHHHHHHHHhCCccccHHHHHHHHHhhccCCCccCccccCCcchhHHHHHHHHHHHHHH
Q 005611 395 LVQEAALVAVRKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHL 455 (688)
Q Consensus 395 lv~~A~~~A~~~~~~~I~~~di~~Al~~~~~g~~~~~~~~~~~~~~~ia~hE~GhAvv~~~ 455 (688)
+++.....|...+ ..|+.+.+++++...... .++.+..+++-++|..++
T Consensus 310 ~l~~l~~~a~~~~-~~it~~~~~~~L~~~~~~-----------~~~~it~~~I~~~Va~~~ 358 (405)
T TIGR00362 310 ALNRLLAYASLTG-KPITLELAKEALKDLLRA-----------KKKEITIENIQEVVAKYY 358 (405)
T ss_pred HHHHHHHHHHHhC-CCCCHHHHHHHHHHhccc-----------cCCCCCHHHHHHHHHHHc
Confidence 9999988886544 669999999998765322 122356677777777654
No 62
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.4e-15 Score=169.66 Aligned_cols=235 Identities=23% Similarity=0.331 Sum_probs=160.3
Q ss_pred ccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhH---------
Q 005611 175 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV--------- 245 (688)
Q Consensus 175 ~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~--------- 245 (688)
+|-.|++++|+++-+++...+... -..+.-++|+||||+|||+|++.+|+.++..|+.++..-..
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~------~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTK------KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhc------cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 345999999999999877533221 12334689999999999999999999999999999875544
Q ss_pred HHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEE
Q 005611 246 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 325 (688)
Q Consensus 246 ~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVI 325 (688)
.+|+|....++-..+.+|...+| +++|||||.++..-. +++...+....+++.+..+..-.-+++ -.-+.|++|
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~r---GDPaSALLEVLDPEQN~~F~DhYLev~--yDLS~VmFi 470 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFR---GDPASALLEVLDPEQNNTFSDHYLEVP--YDLSKVMFI 470 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCC---CChHHHHHhhcCHhhcCchhhccccCc--cchhheEEE
Confidence 35888888899999999999999 899999999986533 333333444444444444433322222 223579999
Q ss_pred EecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhcc-----CcCC-Ccc-----CHHHHHhhC---CCCC--H
Q 005611 326 AATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASK-----VKMS-DSV-----DLSSYAKNL---PGWT--G 389 (688)
Q Consensus 326 aaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~-----~~~~-~~~-----dl~~la~~t---~G~s--~ 389 (688)
||+|..+.+|.+|++ |+. +|+++-++.++..+|.+.|+=. .++. .++ .+..+.+.. .|.- -
T Consensus 471 aTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~Le 547 (782)
T COG0466 471 ATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLE 547 (782)
T ss_pred eecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHH
Confidence 999999999999999 885 9999999999999999988722 2222 111 133333321 1211 2
Q ss_pred HHHHHHHHHHHHHHHHhCCc---cccHHHHHHHHHhhc
Q 005611 390 ARLAQLVQEAALVAVRKGHE---SILSSDMDDAVDRLT 424 (688)
Q Consensus 390 ~dL~~lv~~A~~~A~~~~~~---~I~~~di~~Al~~~~ 424 (688)
++|..+|+.++..-...... .|+..++.+=+....
T Consensus 548 R~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG~~~ 585 (782)
T COG0466 548 REIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLGVPV 585 (782)
T ss_pred HHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhCCcc
Confidence 55666676665554443332 355556655554433
No 63
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.64 E-value=2.7e-15 Score=170.48 Aligned_cols=217 Identities=26% Similarity=0.349 Sum_probs=148.4
Q ss_pred cCCCCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCE
Q 005611 167 DGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPF 236 (688)
Q Consensus 167 ~~~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~----------~~~~ 236 (688)
+.....+|++++|++..++.++..+. ...+.+++|+||||||||++|+++.+.+ +.+|
T Consensus 57 ~~~rp~~f~~iiGqs~~i~~l~~al~------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~f 124 (531)
T TIGR02902 57 EKTRPKSFDEIIGQEEGIKALKAALC------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAF 124 (531)
T ss_pred HhhCcCCHHHeeCcHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCE
Confidence 34456789999999999888875421 1235689999999999999999998642 3688
Q ss_pred EEeeCchh-------HHHHhhhh--------------h--HHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchh
Q 005611 237 YQMAGSEF-------VEVLVGVG--------------S--ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDH 293 (688)
Q Consensus 237 ~~v~~~~~-------~~~~~g~~--------------~--~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~ 293 (688)
+.++|... .+...+.. + +.....+.+ ....+|||||++.+....+
T Consensus 125 i~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~---a~gG~L~IdEI~~L~~~~q--------- 192 (531)
T TIGR02902 125 VEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTR---AHGGVLFIDEIGELHPVQM--------- 192 (531)
T ss_pred EEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhc---cCCcEEEEechhhCCHHHH---------
Confidence 98887631 11111110 0 000112222 2346999999999764422
Q ss_pred hhhhhhHHHHHHHHHHHHHhcCC--------------------------CCCCc-EEEEEecCCCCcCCccccCCCccce
Q 005611 294 LYNAATQERETTLNQLLIELDGF--------------------------DTGKG-VIFLAATNRRDLLDPALLRPGRFDR 346 (688)
Q Consensus 294 ~~~~~~~~~~~~l~~LL~~ld~~--------------------------~~~~~-viVIaaTN~~~~Ld~aL~r~gRf~~ 346 (688)
+.|+..++.- ..+.. .++.+|||.|+.+++++++ |+.
T Consensus 193 -------------~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~- 256 (531)
T TIGR02902 193 -------------NKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV- 256 (531)
T ss_pred -------------HHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-
Confidence 3333332210 00122 3455666779999999998 874
Q ss_pred eeeccCCChhhHHHHHHHHhccCcCCCcc-CHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHhhcc
Q 005611 347 KIRIRAPNAKGRTEILKIHASKVKMSDSV-DLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTV 425 (688)
Q Consensus 347 ~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~-dl~~la~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al~~~~~ 425 (688)
.+++++++.+++.+|++..+++.+..-+. .++.++..+ ++++++.++++.|+..|..+++..|+.+|++.++..-..
T Consensus 257 ~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~~~~ 334 (531)
T TIGR02902 257 EIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIALGEGRKRILAEDIEWVAENGNY 334 (531)
T ss_pred eeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCCccc
Confidence 78899999999999999999876644222 245555544 389999999999999998888889999999999875443
No 64
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=5.8e-15 Score=162.43 Aligned_cols=203 Identities=21% Similarity=0.274 Sum_probs=148.6
Q ss_pred CCCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-------------
Q 005611 169 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP------------- 235 (688)
Q Consensus 169 ~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~------------- 235 (688)
..+-+|+||+|++.+...|+..+.. -+.++.+||+||+|||||++|+.+|+.+++.
T Consensus 12 yRP~~f~dvVGQe~iv~~L~~~i~~-----------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s 80 (484)
T PRK14956 12 YRPQFFRDVIHQDLAIGALQNALKS-----------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS 80 (484)
T ss_pred hCCCCHHHHhChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH
Confidence 3567899999999999998877542 1345578999999999999999999988763
Q ss_pred -----------EEEeeCchhHHHHhhhhhHHHHHHHHHHH----hCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhH
Q 005611 236 -----------FYQMAGSEFVEVLVGVGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQ 300 (688)
Q Consensus 236 -----------~~~v~~~~~~~~~~g~~~~~~r~~f~~A~----~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~ 300 (688)
++.++.. ...+...+|.+.+.+. .....|+||||+|.+..
T Consensus 81 C~~i~~g~~~dviEIdaa------s~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~------------------- 135 (484)
T PRK14956 81 CLEITKGISSDVLEIDAA------SNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD------------------- 135 (484)
T ss_pred HHHHHccCCccceeechh------hcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH-------------------
Confidence 1222211 1112344555555443 23456999999998743
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCC-CccCHHH
Q 005611 301 ERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSS 379 (688)
Q Consensus 301 ~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~-~~~dl~~ 379 (688)
..++.||..++. ...++++|.+|+.++.+.+++++ |+ .++.|.+++.++..+.++..+.+.++. ++..+..
T Consensus 136 ---~A~NALLKtLEE--Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~ 207 (484)
T PRK14956 136 ---QSFNALLKTLEE--PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFW 207 (484)
T ss_pred ---HHHHHHHHHhhc--CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 234777888863 45678888889989999999998 76 478899999988889998888765543 2334777
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 005611 380 YAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 420 (688)
Q Consensus 380 la~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al 420 (688)
+++...| +.|+.-+++.++...+ ...|+.+++.+.+
T Consensus 208 Ia~~S~G-d~RdAL~lLeq~i~~~----~~~it~~~V~~~l 243 (484)
T PRK14956 208 IAKKGDG-SVRDMLSFMEQAIVFT----DSKLTGVKIRKMI 243 (484)
T ss_pred HHHHcCC-hHHHHHHHHHHHHHhC----CCCcCHHHHHHHh
Confidence 8888887 8999999998876432 2358888887665
No 65
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.64 E-value=6e-15 Score=165.25 Aligned_cols=221 Identities=23% Similarity=0.276 Sum_probs=149.5
Q ss_pred CCCcccccc-cccHH--HHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEee
Q 005611 169 STGVKFSDV-AGIDE--AVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMA 240 (688)
Q Consensus 169 ~~~v~f~dV-~G~~~--~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~-----~~~~~~v~ 240 (688)
.+..+|++. .|... +...++++ ..++. .....++|+||||+|||+|++++++++ +..+++++
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~---~~~~~-------~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAV---AENPG-------KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHH---HhCcC-------ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 356789995 45322 33333333 22221 223469999999999999999999987 56688999
Q ss_pred CchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q 005611 241 GSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGK 320 (688)
Q Consensus 241 ~~~~~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~ 320 (688)
+.++...+...........|... ...+++|+|||+|.+..++. ..++.-.+++.+. ...
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlLiiDDi~~l~~~~~-------------~~~~l~~~~n~l~-------~~~ 244 (450)
T PRK00149 186 SEKFTNDFVNALRNNTMEEFKEK-YRSVDVLLIDDIQFLAGKER-------------TQEEFFHTFNALH-------EAG 244 (450)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHH-HhcCCEEEEehhhhhcCCHH-------------HHHHHHHHHHHHH-------HCC
Confidence 98887766554322222233332 23578999999999864421 1112222222222 223
Q ss_pred cEEEEEecCCCCc---CCccccCCCccc--eeeeccCCChhhHHHHHHHHhccCcCC-CccCHHHHHhhCCCCCHHHHHH
Q 005611 321 GVIFLAATNRRDL---LDPALLRPGRFD--RKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQ 394 (688)
Q Consensus 321 ~viVIaaTN~~~~---Ld~aL~r~gRf~--~~I~i~~Pd~~eR~~Il~~~l~~~~~~-~~~dl~~la~~t~G~s~~dL~~ 394 (688)
..+||+++..|.. +++.+.+ ||. .++++++|+.++|.+|++..+...+.. ++..+..++.+..| +.++|..
T Consensus 245 ~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~ 321 (450)
T PRK00149 245 KQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEG 321 (450)
T ss_pred CcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHH
Confidence 3466666666654 6788888 885 589999999999999999998765433 22237778888877 9999999
Q ss_pred HHHHHHHHHHHhCCccccHHHHHHHHHhhc
Q 005611 395 LVQEAALVAVRKGHESILSSDMDDAVDRLT 424 (688)
Q Consensus 395 lv~~A~~~A~~~~~~~I~~~di~~Al~~~~ 424 (688)
+++.....+...+ ..|+.+.+++++....
T Consensus 322 ~l~~l~~~~~~~~-~~it~~~~~~~l~~~~ 350 (450)
T PRK00149 322 ALNRLIAYASLTG-KPITLELAKEALKDLL 350 (450)
T ss_pred HHHHHHHHHHhhC-CCCCHHHHHHHHHHhh
Confidence 9999988876655 5699999999998764
No 66
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.64 E-value=2.5e-14 Score=156.09 Aligned_cols=223 Identities=24% Similarity=0.276 Sum_probs=150.5
Q ss_pred CcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcC---------CCEEEeeC
Q 005611 171 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG---------VPFYQMAG 241 (688)
Q Consensus 171 ~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~---------~~~~~v~~ 241 (688)
+...+++.|.++.++.|...+..... ...+.+++|+||||||||++++++++++. +++++++|
T Consensus 11 ~~~p~~l~gRe~e~~~l~~~l~~~~~--------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 11 DYVPDRIVHRDEQIEELAKALRPILR--------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 34446789999999999887764221 13445799999999999999999987652 56778887
Q ss_pred chhHH----------HHh--hh-------h-hHHHHHHHHHHH-hCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhH
Q 005611 242 SEFVE----------VLV--GV-------G-SARIRDLFKRAK-VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQ 300 (688)
Q Consensus 242 ~~~~~----------~~~--g~-------~-~~~~r~~f~~A~-~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~ 300 (688)
....+ .+. |. . .+..+.++.... ...+.||+|||+|.+....+
T Consensus 83 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~---------------- 146 (365)
T TIGR02928 83 QILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDD---------------- 146 (365)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCc----------------
Confidence 54321 111 11 0 112233333332 34577999999999872211
Q ss_pred HHHHHHHHHHHHhcC-CCCCCcEEEEEecCCCC---cCCccccCCCccc-eeeeccCCChhhHHHHHHHHhccCc----C
Q 005611 301 ERETTLNQLLIELDG-FDTGKGVIFLAATNRRD---LLDPALLRPGRFD-RKIRIRAPNAKGRTEILKIHASKVK----M 371 (688)
Q Consensus 301 ~~~~~l~~LL~~ld~-~~~~~~viVIaaTN~~~---~Ld~aL~r~gRf~-~~I~i~~Pd~~eR~~Il~~~l~~~~----~ 371 (688)
..+..++...+. ..++.++.+|+++|.++ .+++.+.+ ||. ..+++++++.++..+|++.++.... +
T Consensus 147 ---~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~ 221 (365)
T TIGR02928 147 ---DLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVL 221 (365)
T ss_pred ---HHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCC
Confidence 123444433111 12236788899999876 57888877 674 6799999999999999999886211 1
Q ss_pred CCcc-C-HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHhh
Q 005611 372 SDSV-D-LSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRL 423 (688)
Q Consensus 372 ~~~~-d-l~~la~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al~~~ 423 (688)
.++. + +..++..+.| ..+.+.++|+.|...|..++...|+.+|+..|++..
T Consensus 222 ~~~~l~~i~~~~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 222 DDGVIPLCAALAAQEHG-DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred ChhHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 1111 1 2334455556 678888899999999998888999999999999876
No 67
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=3.1e-15 Score=168.16 Aligned_cols=201 Identities=18% Similarity=0.279 Sum_probs=146.7
Q ss_pred CCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC--------------
Q 005611 170 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------------- 235 (688)
Q Consensus 170 ~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~-------------- 235 (688)
..-+|+||+|++.+++.|++.+.. -+.++.+||+||+|+|||++++.+|+.+++.
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~-----------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG 79 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQ-----------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCG 79 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCc
Confidence 467899999999999999888653 2445678999999999999999999998762
Q ss_pred ---------------EEEeeCchhHHHHhhhhhHHHHHHHHHHHh----CCCeEEEEcccchhhhhhcCCccCcchhhhh
Q 005611 236 ---------------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYN 296 (688)
Q Consensus 236 ---------------~~~v~~~~~~~~~~g~~~~~~r~~f~~A~~----~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~ 296 (688)
++.++.. ...+...+|+++..+.. ...+|+||||+|.+..
T Consensus 80 ~C~sC~~I~aG~hpDviEIdAa------s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~--------------- 138 (700)
T PRK12323 80 QCRACTEIDAGRFVDYIEMDAA------SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN--------------- 138 (700)
T ss_pred ccHHHHHHHcCCCCcceEeccc------ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH---------------
Confidence 1111111 01234456776666542 3457999999998742
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCcc-
Q 005611 297 AATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV- 375 (688)
Q Consensus 297 ~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~- 375 (688)
...|.||+.|+. ...++++|.+||.++.|.+.+++ |+ ..+.|+.++.++..+.++..+.+.++..+.
T Consensus 139 -------~AaNALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~e 206 (700)
T PRK12323 139 -------HAFNAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVN 206 (700)
T ss_pred -------HHHHHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHH
Confidence 234788888873 45678888889999999999998 75 689999999999999988887665544332
Q ss_pred CHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHH
Q 005611 376 DLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDA 419 (688)
Q Consensus 376 dl~~la~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~A 419 (688)
.+..+++.+.| +.++..+++.++.... ...|+.+++...
T Consensus 207 AL~~IA~~A~G-s~RdALsLLdQaia~~----~~~It~~~V~~~ 245 (700)
T PRK12323 207 ALRLLAQAAQG-SMRDALSLTDQAIAYS----AGNVSEEAVRGM 245 (700)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHhc----cCCcCHHHHHHH
Confidence 25667888777 8999999988776432 235666555443
No 68
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=7.6e-15 Score=163.78 Aligned_cols=204 Identities=23% Similarity=0.295 Sum_probs=143.4
Q ss_pred CCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCC---------------
Q 005611 170 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV--------------- 234 (688)
Q Consensus 170 ~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~--------------- 234 (688)
.+-+|+||+|++.+++.|+..+.. -+.+..++|+|||||||||+|+++|+.+++
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~-----------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c 77 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKK-----------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRAC 77 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHH
Confidence 467899999999998888776442 135567999999999999999999998765
Q ss_pred ---------CEEEeeCchhHHHHhhhhhHHHHHHHHHHHh----CCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHH
Q 005611 235 ---------PFYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE 301 (688)
Q Consensus 235 ---------~~~~v~~~~~~~~~~g~~~~~~r~~f~~A~~----~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~ 301 (688)
.++.++.+. ..+...+|.+...+.. ....||+|||+|.+...
T Consensus 78 ~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~------------------- 132 (472)
T PRK14962 78 RSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKE------------------- 132 (472)
T ss_pred HHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHH-------------------
Confidence 234443321 1123345555444432 23569999999987422
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCC-CccCHHHH
Q 005611 302 RETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSY 380 (688)
Q Consensus 302 ~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~-~~~dl~~l 380 (688)
..+.|+..++. .+.++++|.+|+.++.+++++++ |+. .+++++|+.++...+++..+...+.. ++..+..+
T Consensus 133 ---a~~~LLk~LE~--p~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~I 204 (472)
T PRK14962 133 ---AFNALLKTLEE--PPSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFI 204 (472)
T ss_pred ---HHHHHHHHHHh--CCCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 23566666663 33567777777778899999998 764 89999999999999999888654433 22236778
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHh
Q 005611 381 AKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDR 422 (688)
Q Consensus 381 a~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al~~ 422 (688)
++.+.| +.+++.+.+..+...+ + ..|+.+++.+++..
T Consensus 205 a~~s~G-dlR~aln~Le~l~~~~---~-~~It~e~V~~~l~~ 241 (472)
T PRK14962 205 AKRASG-GLRDALTMLEQVWKFS---E-GKITLETVHEALGL 241 (472)
T ss_pred HHHhCC-CHHHHHHHHHHHHHhc---C-CCCCHHHHHHHHcC
Confidence 887766 7777777777655432 2 34999999988754
No 69
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=8.1e-15 Score=166.75 Aligned_cols=201 Identities=19% Similarity=0.280 Sum_probs=146.3
Q ss_pred CCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC--------------
Q 005611 170 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------------- 235 (688)
Q Consensus 170 ~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~-------------- 235 (688)
..-+|+||+|++.+++.|++.+.. -+.++.+||+||+|||||++++.+++.+++.
T Consensus 11 RPqtFdEVIGQe~Vv~~L~~aL~~-----------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sC 79 (830)
T PRK07003 11 RPKDFASLVGQEHVVRALTHALDG-----------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRAC 79 (830)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHhc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHH
Confidence 467899999999999999887542 2445678999999999999999999988653
Q ss_pred ----------EEEeeCchhHHHHhhhhhHHHHHHHHHHHh----CCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHH
Q 005611 236 ----------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE 301 (688)
Q Consensus 236 ----------~~~v~~~~~~~~~~g~~~~~~r~~f~~A~~----~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~ 301 (688)
++.++..+ ..+...+|.+++.+.. ....|+||||+|.+...
T Consensus 80 r~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~------------------- 134 (830)
T PRK07003 80 REIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNH------------------- 134 (830)
T ss_pred HHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHH-------------------
Confidence 22222111 1233456677766542 23579999999987432
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCC-CccCHHHH
Q 005611 302 RETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSY 380 (688)
Q Consensus 302 ~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~-~~~dl~~l 380 (688)
..|.||+.|+. ...++.+|.+||.++.|.+.+++ |+ ..+.|..++.++..+.|+..+.+.++. ++..+..|
T Consensus 135 ---A~NALLKtLEE--PP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lI 206 (830)
T PRK07003 135 ---AFNAMLKTLEE--PPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLL 206 (830)
T ss_pred ---HHHHHHHHHHh--cCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 24677777763 34578888899999999999998 76 689999999999999999888765544 22336778
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHH
Q 005611 381 AKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDA 419 (688)
Q Consensus 381 a~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~A 419 (688)
++...| +.++..+++.++.... ...|+.+++...
T Consensus 207 A~~A~G-smRdALsLLdQAia~~----~~~It~~~V~~~ 240 (830)
T PRK07003 207 ARAAQG-SMRDALSLTDQAIAYS----ANEVTETAVSGM 240 (830)
T ss_pred HHHcCC-CHHHHHHHHHHHHHhc----cCCcCHHHHHHH
Confidence 888888 8899999988877443 234666555443
No 70
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.8e-14 Score=156.81 Aligned_cols=203 Identities=20% Similarity=0.292 Sum_probs=144.7
Q ss_pred CCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCE-------------
Q 005611 170 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPF------------- 236 (688)
Q Consensus 170 ~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~------------- 236 (688)
.+.+|++|+|++.+++.|++.+.. -+.++.++|+||+|+|||++|+++|+.+.+..
T Consensus 11 rP~~~~~iiGq~~~~~~l~~~~~~-----------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c 79 (363)
T PRK14961 11 RPQYFRDIIGQKHIVTAISNGLSL-----------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIIC 79 (363)
T ss_pred CCCchhhccChHHHHHHHHHHHHc-----------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 457899999999999998877542 13456789999999999999999999886431
Q ss_pred -----------EEeeCchhHHHHhhhhhHHHHHHHHHHHh----CCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHH
Q 005611 237 -----------YQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE 301 (688)
Q Consensus 237 -----------~~v~~~~~~~~~~g~~~~~~r~~f~~A~~----~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~ 301 (688)
+.++... ..+...++.+...+.. ....|++|||+|.+...
T Consensus 80 ~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~------------------- 134 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRH------------------- 134 (363)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHH-------------------
Confidence 1111110 0122345555554432 23469999999986421
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCC-CccCHHHH
Q 005611 302 RETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSY 380 (688)
Q Consensus 302 ~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~-~~~dl~~l 380 (688)
..+.++..++. .+.++.+|.+|+.++.+.+++++ |+ ..+++++|+.++..++++..+++.+.. ++..+..+
T Consensus 135 ---a~naLLk~lEe--~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~i 206 (363)
T PRK14961 135 ---SFNALLKTLEE--PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLI 206 (363)
T ss_pred ---HHHHHHHHHhc--CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 23567777764 34566667777888889999987 76 588999999999999999888765543 22346677
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHH
Q 005611 381 AKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 421 (688)
Q Consensus 381 a~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al~ 421 (688)
+..+.| +++++.+++..+... +...|+.+++.+++.
T Consensus 207 a~~s~G-~~R~al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 207 AYHAHG-SMRDALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred HHHcCC-CHHHHHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 877776 889988888877643 456799998888764
No 71
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.61 E-value=5e-15 Score=175.00 Aligned_cols=261 Identities=16% Similarity=0.151 Sum_probs=173.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhh------------------------
Q 005611 16 PVASSISSRLMVELGMVTAIMAAAAAIVGGFLASAVFAVTSFIFVTTVYVVWPIAR------------------------ 71 (688)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------------------------ 71 (688)
.|...+..++. .++-.+......++-+|.++|.+++++++.+++..+..-+..
T Consensus 777 ~vr~~v~~rl~---~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~ea 853 (1228)
T KOG0055|consen 777 NVRAAVGDRLS---LVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEA 853 (1228)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 45555666666 555566666667777888999999999888877754432221
Q ss_pred ----------------------------------------------HHHHHHHHHHHHhhhhhhhhhhhhccCCccccee
Q 005611 72 ----------------------------------------------PFVNIFRGLILGIIENISDYIVDLSGEGGILSKF 105 (688)
Q Consensus 72 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (688)
.++...+++.++|| .+++.
T Consensus 854 i~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G---------------~~Li~ 918 (1228)
T KOG0055|consen 854 VSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYG---------------ARLIS 918 (1228)
T ss_pred HHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------HHHHh
Confidence 12222233344444 67777
Q ss_pred ccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc---cccccccCCCCcccccc-cccH
Q 005611 106 YEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRS---KAEARVDGSTGVKFSDV-AGID 181 (688)
Q Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~v~f~dV-~G~~ 181 (688)
+|.++..+..--+..+..-.+-+.....++-.+.+++.+..+++.+++......+ ........++++.|++| +-|.
T Consensus 919 ~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YP 998 (1228)
T KOG0055|consen 919 NGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYP 998 (1228)
T ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCC
Confidence 7777776666555555554555555555556667777777777777776442222 11223345578999998 5553
Q ss_pred --HHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHH-----------------------------
Q 005611 182 --EAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG----------------------------- 230 (688)
Q Consensus 182 --~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~----------------------------- 230 (688)
+....++++ ++.+++++.+.|+||+||||||+...|-|
T Consensus 999 sRP~~~Il~~l-----------~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~ 1067 (1228)
T KOG0055|consen 999 TRPDVPVLNNL-----------SLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIG 1067 (1228)
T ss_pred CCCCchhhcCC-----------cEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcc
Confidence 122222222 55678889999999999999999999998
Q ss_pred ----------------------------------hcCCCEEEeeCchhHHHHhhh------hhHHHHHHHHHHHhCCCeE
Q 005611 231 ----------------------------------EAGVPFYQMAGSEFVEVLVGV------GSARIRDLFKRAKVNKPSV 270 (688)
Q Consensus 231 ----------------------------------~~~~~~~~v~~~~~~~~~~g~------~~~~~r~~f~~A~~~~p~I 270 (688)
.++.+-|..+.++.+++.+|+ |+|++|.+++||..++|.|
T Consensus 1068 lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkI 1147 (1228)
T KOG0055|consen 1068 LVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKI 1147 (1228)
T ss_pred eeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCe
Confidence 224444555666667777775 8899999999999999999
Q ss_pred EEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEE
Q 005611 271 IFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLA 326 (688)
Q Consensus 271 L~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIa 326 (688)
|+|||+++.++..++ +. +.+.||....+++.+|||
T Consensus 1148 LLLDEATSALDseSE------------------rv---VQeALd~a~~gRT~IvIA 1182 (1228)
T KOG0055|consen 1148 LLLDEATSALDSESE------------------RV---VQEALDRAMEGRTTIVIA 1182 (1228)
T ss_pred eeeeccchhhhhhhH------------------HH---HHHHHHHhhcCCcEEEEe
Confidence 999999998776543 33 334556567778888884
No 72
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.7e-14 Score=152.17 Aligned_cols=271 Identities=15% Similarity=0.101 Sum_probs=190.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHH---------------------HHHHH
Q 005611 24 RLMVELGMVTAIMAAAAAIVGGFLASAVFAVTSFIFVTTVYVVWPIARPFVNIF---------------------RGLIL 82 (688)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~---------------------~~~~~ 82 (688)
+.++--...+.+=.+...++......|.|++++++...++.+||-.++-.-.-+ +-.+-
T Consensus 57 ~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk 136 (497)
T COG5265 57 RWILFNILPTLVEISLVAVILWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVK 136 (497)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhhee
Confidence 333334455566666677777888889999998888888877776544321111 11222
Q ss_pred Hhhhhhhh------hhhhh----------------------------ccCCcccceeccccChhhHHHHHHHHHHHHHHH
Q 005611 83 GIIENISD------YIVDL----------------------------SGEGGILSKFYEFYTFGGLSASLEMLKPITLVI 128 (688)
Q Consensus 83 ~~~~~~~~------~~~~~----------------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 128 (688)
.+|-|-.+ -++.| .-......+..|.+|.|+++.-..|++++..|.
T Consensus 137 ~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Pl 216 (497)
T COG5265 137 YFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPL 216 (497)
T ss_pred ecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhh
Confidence 22221111 00000 011345667889999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcccccccccccccccc--ccccc-cCCCCcccccc-cccHHHHHHHHHHHHHhcChhhhhccC
Q 005611 129 LTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRSK--AEARV-DGSTGVKFSDV-AGIDEAVEELQELVRYLKNPELFDKMG 204 (688)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~--~~~~~-~~~~~v~f~dV-~G~~~~k~~L~~ii~~l~~~~~~~~~g 204 (688)
..++..++.+.......++.++++......... ++... .....+.|.+| ++++..+..|..+ ++.
T Consensus 217 nflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~~r~iL~~i-----------sf~ 285 (497)
T COG5265 217 NFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRPILNGI-----------SFT 285 (497)
T ss_pred hhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCccccccccceEEEEEEEeeccccchhhcCc-----------ccc
Confidence 999999999988888888887777663333222 22222 34567899998 8888887777666 667
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc----------------------------------------------------
Q 005611 205 IKPPHGVLLEGPPGCGKTLVAKAIAGEA---------------------------------------------------- 232 (688)
Q Consensus 205 ~~~~~gvLL~GppGtGKT~La~alA~~~---------------------------------------------------- 232 (688)
+++++.+.++||+|+|||++.+.+-+-.
T Consensus 286 i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at 365 (497)
T COG5265 286 IPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDAT 365 (497)
T ss_pred ccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCcccc
Confidence 8889999999999999999999999811
Q ss_pred -----------CCCEEEeeCchhHHHHhhh------hhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhh
Q 005611 233 -----------GVPFYQMAGSEFVEVLVGV------GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLY 295 (688)
Q Consensus 233 -----------~~~~~~v~~~~~~~~~~g~------~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~ 295 (688)
..+.+..+.++.++..+|+ +++++|.+++++..++|+|+++||+++.++...+
T Consensus 366 ~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te---------- 435 (497)
T COG5265 366 AEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTE---------- 435 (497)
T ss_pred HHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHH----------
Confidence 2233444556666666665 7889999999999999999999999998876543
Q ss_pred hhhhHHHHHHHHHHHHHhcCCCCCCcEEEEE
Q 005611 296 NAATQERETTLNQLLIELDGFDTGKGVIFLA 326 (688)
Q Consensus 296 ~~~~~~~~~~l~~LL~~ld~~~~~~~viVIa 326 (688)
.+++..++....+++.+|||
T Consensus 436 -----------~~iq~~l~~~~~~rttlvia 455 (497)
T COG5265 436 -----------QAIQAALREVSAGRTTLVIA 455 (497)
T ss_pred -----------HHHHHHHHHHhCCCeEEEEe
Confidence 44555555556778888885
No 73
>PRK06893 DNA replication initiation factor; Validated
Probab=99.60 E-value=4.4e-14 Score=144.11 Aligned_cols=212 Identities=12% Similarity=0.109 Sum_probs=134.4
Q ss_pred CCCCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchh
Q 005611 168 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEF 244 (688)
Q Consensus 168 ~~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~ 244 (688)
..+..+|++.++.+... .+..+.+... ......++||||||||||+|++++|+++ +....+++..+.
T Consensus 9 ~~~~~~fd~f~~~~~~~-~~~~~~~~~~---------~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~ 78 (229)
T PRK06893 9 QIDDETLDNFYADNNLL-LLDSLRKNFI---------DLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS 78 (229)
T ss_pred CCCcccccccccCChHH-HHHHHHHHhh---------ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh
Confidence 34678999988665432 1111211111 1122358999999999999999999876 345555554322
Q ss_pred HHHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEE
Q 005611 245 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF 324 (688)
Q Consensus 245 ~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viV 324 (688)
.. .....+... .++++|+|||++.+..+. ..+..+..++..+. ..+..+++
T Consensus 79 ~~--------~~~~~~~~~--~~~dlLilDDi~~~~~~~-----------------~~~~~l~~l~n~~~--~~~~~ill 129 (229)
T PRK06893 79 QY--------FSPAVLENL--EQQDLVCLDDLQAVIGNE-----------------EWELAIFDLFNRIK--EQGKTLLL 129 (229)
T ss_pred hh--------hhHHHHhhc--ccCCEEEEeChhhhcCCh-----------------HHHHHHHHHHHHHH--HcCCcEEE
Confidence 11 011222222 356799999999875332 11223334443332 12334556
Q ss_pred EEecCCCCcCC---ccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCcc-CHHHHHhhCCCCCHHHHHHHHHHHH
Q 005611 325 LAATNRRDLLD---PALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV-DLSSYAKNLPGWTGARLAQLVQEAA 400 (688)
Q Consensus 325 IaaTN~~~~Ld---~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~-dl~~la~~t~G~s~~dL~~lv~~A~ 400 (688)
+++++.|..++ +.+.++.+++..+++++|+.++|.+|++..+...++.-+. -+..++++.+| +.+.+.++++...
T Consensus 130 its~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~ 208 (229)
T PRK06893 130 ISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLLD 208 (229)
T ss_pred EeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHH
Confidence 66666677654 7888855567899999999999999999888655543222 36778888877 8999999998765
Q ss_pred HHHHHhCCccccHHHHHHHH
Q 005611 401 LVAVRKGHESILSSDMDDAV 420 (688)
Q Consensus 401 ~~A~~~~~~~I~~~di~~Al 420 (688)
..+..++ +.||...+++++
T Consensus 209 ~~~~~~~-~~it~~~v~~~L 227 (229)
T PRK06893 209 KASLQAQ-RKLTIPFVKEIL 227 (229)
T ss_pred HHHHhcC-CCCCHHHHHHHh
Confidence 4444333 479998888775
No 74
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=2.7e-14 Score=160.00 Aligned_cols=215 Identities=19% Similarity=0.261 Sum_probs=153.4
Q ss_pred CCCCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEe--------
Q 005611 168 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM-------- 239 (688)
Q Consensus 168 ~~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v-------- 239 (688)
...+-+|+|++|++.+++.|+..+.. .+.++.+||+||+|||||++|+++|+.+++.....
T Consensus 14 kyRP~~f~dliGq~~vv~~L~~ai~~-----------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C 82 (507)
T PRK06645 14 KYRPSNFAELQGQEVLVKVLSYTILN-----------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC 82 (507)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC
Confidence 34567899999999999988876432 24567899999999999999999999887632100
Q ss_pred ----eCchhHHH----------HhhhhhHHHHHHHHHHHhC----CCeEEEEcccchhhhhhcCCccCcchhhhhhhhHH
Q 005611 240 ----AGSEFVEV----------LVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE 301 (688)
Q Consensus 240 ----~~~~~~~~----------~~g~~~~~~r~~f~~A~~~----~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~ 301 (688)
+|..+.+. -...+...++.+++.+... ...|++|||+|.+..
T Consensus 83 ~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~-------------------- 142 (507)
T PRK06645 83 EQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK-------------------- 142 (507)
T ss_pred CCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH--------------------
Confidence 01111000 0012345677777776533 346999999998642
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCc-cCHHHH
Q 005611 302 RETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSY 380 (688)
Q Consensus 302 ~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~-~dl~~l 380 (688)
..++.|+..++. .+..+++|.+|+.++.+++.+++ |+ ..+++++++.++..++++..+++.+..-+ ..+..+
T Consensus 143 --~a~naLLk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~I 215 (507)
T PRK06645 143 --GAFNALLKTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRII 215 (507)
T ss_pred --HHHHHHHHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 224667777763 45567777778888899999988 76 57889999999999999999977665433 236778
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHh
Q 005611 381 AKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDR 422 (688)
Q Consensus 381 a~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al~~ 422 (688)
++.+.| +.+++.+++..+...+..+ ...|+.+++.+.+..
T Consensus 216 a~~s~G-slR~al~~Ldkai~~~~~~-~~~It~~~V~~llg~ 255 (507)
T PRK06645 216 AYKSEG-SARDAVSILDQAASMSAKS-DNIISPQVINQMLGL 255 (507)
T ss_pred HHHcCC-CHHHHHHHHHHHHHhhccC-CCCcCHHHHHHHHCC
Confidence 888877 9999999999987765322 246888888876543
No 75
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=2.2e-14 Score=161.76 Aligned_cols=203 Identities=20% Similarity=0.288 Sum_probs=147.9
Q ss_pred CCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC--------------
Q 005611 170 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------------- 235 (688)
Q Consensus 170 ~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~-------------- 235 (688)
.+-+|++|+|++.+++.|++.+.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 10 RPktFddVIGQe~vv~~L~~aI~~-----------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC 78 (702)
T PRK14960 10 RPRNFNELVGQNHVSRALSSALER-----------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATC 78 (702)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHH
Confidence 457899999999999999887652 2456688999999999999999999988762
Q ss_pred ----------EEEeeCchhHHHHhhhhhHHHHHHHHHHHh----CCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHH
Q 005611 236 ----------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE 301 (688)
Q Consensus 236 ----------~~~v~~~~~~~~~~g~~~~~~r~~f~~A~~----~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~ 301 (688)
++.++.++ ..+...+|.++..+.. ....|+||||+|.+...
T Consensus 79 ~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~------------------- 133 (702)
T PRK14960 79 KAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH------------------- 133 (702)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH-------------------
Confidence 23333221 1133456666655432 34579999999986432
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCc-cCHHHH
Q 005611 302 RETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSY 380 (688)
Q Consensus 302 ~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~-~dl~~l 380 (688)
..+.|+..++. .+.++.+|.+|+.+..+++.+++ |+ ..+++.+++.++..+.++..+.+.+..-+ ..+..+
T Consensus 134 ---A~NALLKtLEE--PP~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~I 205 (702)
T PRK14960 134 ---SFNALLKTLEE--PPEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQI 205 (702)
T ss_pred ---HHHHHHHHHhc--CCCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 23667777763 34566777778888888888887 76 58899999999999999988876655432 337778
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHH
Q 005611 381 AKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 421 (688)
Q Consensus 381 a~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al~ 421 (688)
++.+.| +.+++.+++..+... +...|+.+++...+.
T Consensus 206 A~~S~G-dLRdALnLLDQaIay----g~g~IT~edV~~lLG 241 (702)
T PRK14960 206 AESAQG-SLRDALSLTDQAIAY----GQGAVHHQDVKEMLG 241 (702)
T ss_pred HHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHhc
Confidence 888777 899999998877643 356788888877543
No 76
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.60 E-value=5.4e-15 Score=174.96 Aligned_cols=121 Identities=18% Similarity=0.134 Sum_probs=92.6
Q ss_pred CcccceeccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccc--cccccCCCCccccc
Q 005611 99 GGILSKFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRSKA--EARVDGSTGVKFSD 176 (688)
Q Consensus 99 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~v~f~d 176 (688)
-|++.+.+|.+|.|++++|..+...+..|+..+..++..++....+..|+.++++......... .........+.|++
T Consensus 399 ~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~ 478 (708)
T TIGR01193 399 TGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVIND 478 (708)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCCCCCCcEEEEE
Confidence 3477788999999999999999999999999999999999999999999988876532221111 11122335688999
Q ss_pred c-cccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHH
Q 005611 177 V-AGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 230 (688)
Q Consensus 177 V-~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~ 230 (688)
| +.|+..+..|+++ ++.++++..+.|+||+|+|||||++.+++
T Consensus 479 vsf~y~~~~~iL~~i-----------sl~i~~G~~vaIvG~SGsGKSTLlklL~g 522 (708)
T TIGR01193 479 VSYSYGYGSNILSDI-----------SLTIKMNSKTTIVGMSGSGKSTLAKLLVG 522 (708)
T ss_pred EEEEcCCCCcceece-----------eEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 8 6664322223333 66688899999999999999999999998
No 77
>PRK04195 replication factor C large subunit; Provisional
Probab=99.59 E-value=2.9e-14 Score=161.03 Aligned_cols=209 Identities=22% Similarity=0.271 Sum_probs=145.4
Q ss_pred cCCCCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHH
Q 005611 167 DGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 246 (688)
Q Consensus 167 ~~~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~ 246 (688)
+...+.+|+|++|.+++++.|++++....+ ..+++.+||+||||||||++|+++|++++.+++.+++++...
T Consensus 6 eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~ 77 (482)
T PRK04195 6 EKYRPKTLSDVVGNEKAKEQLREWIESWLK--------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT 77 (482)
T ss_pred hhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc
Confidence 344567899999999999999998765332 134678999999999999999999999999999999887542
Q ss_pred HHhhhhhHHHHHHHHHHHh------CCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q 005611 247 VLVGVGSARIRDLFKRAKV------NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGK 320 (688)
Q Consensus 247 ~~~g~~~~~~r~~f~~A~~------~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~ 320 (688)
. ..++.....+.. ..+.+|+|||+|.+..+.. ...++.++..++. .
T Consensus 78 ~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d------------------~~~~~aL~~~l~~----~ 129 (482)
T PRK04195 78 A------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED------------------RGGARAILELIKK----A 129 (482)
T ss_pred H------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc------------------hhHHHHHHHHHHc----C
Confidence 1 122222222211 2577999999999864211 1122444444441 2
Q ss_pred cEEEEEecCCCCcCCc-cccCCCccceeeeccCCChhhHHHHHHHHhccCcCC-CccCHHHHHhhCCCCCHHHHHHHHHH
Q 005611 321 GVIFLAATNRRDLLDP-ALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQE 398 (688)
Q Consensus 321 ~viVIaaTN~~~~Ld~-aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~-~~~dl~~la~~t~G~s~~dL~~lv~~ 398 (688)
+..+|.+||.+..+++ .+++ ....|+|++|+.+++..+++..+...++. ++..+..++..+.| |++.+++.
T Consensus 130 ~~~iIli~n~~~~~~~k~Lrs---r~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~ 202 (482)
T PRK04195 130 KQPIILTANDPYDPSLRELRN---ACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAIND 202 (482)
T ss_pred CCCEEEeccCccccchhhHhc---cceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHH
Confidence 3345667888888877 5554 35689999999999999999988765543 22347777877654 77777776
Q ss_pred HHHHHHHhCCccccHHHHHHHH
Q 005611 399 AALVAVRKGHESILSSDMDDAV 420 (688)
Q Consensus 399 A~~~A~~~~~~~I~~~di~~Al 420 (688)
....+ .+...++.+++....
T Consensus 203 Lq~~a--~~~~~it~~~v~~~~ 222 (482)
T PRK04195 203 LQAIA--EGYGKLTLEDVKTLG 222 (482)
T ss_pred HHHHh--cCCCCCcHHHHHHhh
Confidence 65533 455678888887654
No 78
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.59 E-value=6.7e-15 Score=174.27 Aligned_cols=172 Identities=19% Similarity=0.151 Sum_probs=121.3
Q ss_pred cccceeccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccc-------ccc-ccCCCC
Q 005611 100 GILSKFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRSKA-------EAR-VDGSTG 171 (688)
Q Consensus 100 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~-------~~~-~~~~~~ 171 (688)
|++.+.+|.+|.|.+++|..+...+..|+..+...+..++....+..|+.++++..+...... ... ......
T Consensus 398 g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~ 477 (710)
T TIGR03796 398 GGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGY 477 (710)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCe
Confidence 467778999999999999999999999999999999999999999999988876532221111 000 112346
Q ss_pred cccccc-cccHHH-HHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC--EEEee-------
Q 005611 172 VKFSDV-AGIDEA-VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--FYQMA------- 240 (688)
Q Consensus 172 v~f~dV-~G~~~~-k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~--~~~v~------- 240 (688)
++|+|| +.|+.. +..|+++ ++.++++..+.++||+|+|||||++.+++...-. -+.++
T Consensus 478 I~~~~vsf~y~~~~~~vL~~i-----------sl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~ 546 (710)
T TIGR03796 478 VELRNITFGYSPLEPPLIENF-----------SLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEI 546 (710)
T ss_pred EEEEEEEEecCCCCCCcccce-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHC
Confidence 889998 655431 2223332 5667888899999999999999999999833100 00000
Q ss_pred -----------------------------------------------CchhH-------HHHhhh------hhHHHHHHH
Q 005611 241 -----------------------------------------------GSEFV-------EVLVGV------GSARIRDLF 260 (688)
Q Consensus 241 -----------------------------------------------~~~~~-------~~~~g~------~~~~~r~~f 260 (688)
..++. ++.+|+ +++++|..+
T Consensus 547 ~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaL 626 (710)
T TIGR03796 547 PREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEI 626 (710)
T ss_pred CHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHH
Confidence 00000 111111 688999999
Q ss_pred HHHHhCCCeEEEEcccchhhhh
Q 005611 261 KRAKVNKPSVIFIDEIDALATR 282 (688)
Q Consensus 261 ~~A~~~~p~IL~LDEiD~l~~~ 282 (688)
+||..++|.|+++||..+-.+.
T Consensus 627 ARall~~p~iliLDEptS~LD~ 648 (710)
T TIGR03796 627 ARALVRNPSILILDEATSALDP 648 (710)
T ss_pred HHHHhhCCCEEEEECccccCCH
Confidence 9999999999999999986544
No 79
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.59 E-value=2.6e-14 Score=159.01 Aligned_cols=224 Identities=17% Similarity=0.198 Sum_probs=147.4
Q ss_pred CCCCccccccc-ccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEeeC
Q 005611 168 GSTGVKFSDVA-GIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAG 241 (688)
Q Consensus 168 ~~~~v~f~dV~-G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~-----~~~~~~v~~ 241 (688)
-.+..+|++.+ |-. .............++. ...+++||||||+|||+|++++++++ +..++++++
T Consensus 98 l~~~~tFdnFv~g~~-n~~a~~~~~~~~~~~~--------~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 98 LNPDYTFENFVVGPG-NSFAYHAALEVAKNPG--------RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CCCCCcccccccCCc-hHHHHHHHHHHHhCcC--------CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 34678899974 533 2222222222232221 13469999999999999999999975 457888898
Q ss_pred chhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCc
Q 005611 242 SEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKG 321 (688)
Q Consensus 242 ~~~~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ 321 (688)
.++...+.......-...|......++++|+|||++.+.++.. ...+...+++.+. ....
T Consensus 169 ~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~~-------------~q~elf~~~n~l~-------~~~k 228 (440)
T PRK14088 169 EKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKTG-------------VQTELFHTFNELH-------DSGK 228 (440)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCcHH-------------HHHHHHHHHHHHH-------HcCC
Confidence 8887765443211111223333334688999999998764421 1112222233322 2234
Q ss_pred EEEEEecCCCCc---CCccccCCCcc--ceeeeccCCChhhHHHHHHHHhccCcCCC-ccCHHHHHhhCCCCCHHHHHHH
Q 005611 322 VIFLAATNRRDL---LDPALLRPGRF--DRKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLSSYAKNLPGWTGARLAQL 395 (688)
Q Consensus 322 viVIaaTN~~~~---Ld~aL~r~gRf--~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~-~~dl~~la~~t~G~s~~dL~~l 395 (688)
.+|+++.+.|.. +++.+.+ || ..++.+++||.+.|.+|++..+...++.- +..+..++....| +.++|+.+
T Consensus 229 ~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~ 305 (440)
T PRK14088 229 QIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGA 305 (440)
T ss_pred eEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHH
Confidence 566666666665 5567887 66 46889999999999999999887544332 2237778888777 89999999
Q ss_pred HHHHHHHHHHhCCccccHHHHHHHHHhhc
Q 005611 396 VQEAALVAVRKGHESILSSDMDDAVDRLT 424 (688)
Q Consensus 396 v~~A~~~A~~~~~~~I~~~di~~Al~~~~ 424 (688)
++.....+...+ ..|+.+.+.+++....
T Consensus 306 l~~l~~~~~~~~-~~it~~~a~~~L~~~~ 333 (440)
T PRK14088 306 IIKLLVYKETTG-EEVDLKEAILLLKDFI 333 (440)
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHHHHh
Confidence 999877776655 5699999999998764
No 80
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=2.5e-14 Score=161.27 Aligned_cols=203 Identities=19% Similarity=0.258 Sum_probs=147.7
Q ss_pred CCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC--------------
Q 005611 170 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------------- 235 (688)
Q Consensus 170 ~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~-------------- 235 (688)
.+-+|+||+|++.+++.|++.+.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 11 RP~~f~divGq~~v~~~L~~~~~~-----------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 79 (509)
T PRK14958 11 RPRCFQEVIGQAPVVRALSNALDQ-----------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENC 79 (509)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHh-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHH
Confidence 467899999999999999888653 2455678999999999999999999988663
Q ss_pred ----------EEEeeCchhHHHHhhhhhHHHHHHHHHHHh----CCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHH
Q 005611 236 ----------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE 301 (688)
Q Consensus 236 ----------~~~v~~~~~~~~~~g~~~~~~r~~f~~A~~----~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~ 301 (688)
++.++... ..+...+|.+...+.. ....|++|||+|.+...
T Consensus 80 ~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~------------------- 134 (509)
T PRK14958 80 REIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH------------------- 134 (509)
T ss_pred HHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH-------------------
Confidence 23333221 1233456666665432 23469999999987532
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCC-ccCHHHH
Q 005611 302 RETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLSSY 380 (688)
Q Consensus 302 ~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~-~~dl~~l 380 (688)
..|.|+..|+. .+.++.+|.+|+.+..+.+.+++ |+ ..+++.+++.++..+.++..+.+.+..- +..+..+
T Consensus 135 ---a~naLLk~LEe--pp~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~i 206 (509)
T PRK14958 135 ---SFNALLKTLEE--PPSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLL 206 (509)
T ss_pred ---HHHHHHHHHhc--cCCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 24677777774 34567777777888888888888 75 5788999999988888888887665442 2236677
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHH
Q 005611 381 AKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 421 (688)
Q Consensus 381 a~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al~ 421 (688)
++.+.| +.+++.+++..+... +...|+.+++.+.+.
T Consensus 207 a~~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~lg 242 (509)
T PRK14958 207 ARAANG-SVRDALSLLDQSIAY----GNGKVLIADVKTMLG 242 (509)
T ss_pred HHHcCC-cHHHHHHHHHHHHhc----CCCCcCHHHHHHHHC
Confidence 877766 899999999887543 345788888877653
No 81
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.59 E-value=7.3e-15 Score=170.17 Aligned_cols=172 Identities=13% Similarity=0.203 Sum_probs=119.2
Q ss_pred cccceeccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccccCCCCcccccc-c
Q 005611 100 GILSKFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRSKAEARVDGSTGVKFSDV-A 178 (688)
Q Consensus 100 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~f~dV-~ 178 (688)
|++.+.+|.+|.|+++++..++..+..|+..+...+...++...+..|+.++++..+...............++|+|| +
T Consensus 270 g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~i~~~~vsf 349 (582)
T PRK11176 270 ASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKRVIERAKGDIEFRNVTF 349 (582)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCCCCCCeEEEEEEEE
Confidence 456678899999999999999999999999999999988888888888877765432211111111122346889998 5
Q ss_pred ccHHH-HHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-----------------------
Q 005611 179 GIDEA-VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV----------------------- 234 (688)
Q Consensus 179 G~~~~-k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~----------------------- 234 (688)
.+++. +..++++ ++.+++++.++|+||+|+|||||++.+++....
T Consensus 350 ~y~~~~~~il~~i-----------~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 418 (582)
T PRK11176 350 TYPGKEVPALRNI-----------NFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQ 418 (582)
T ss_pred ecCCCCCccccCc-----------eEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhh
Confidence 55431 2222222 556788889999999999999999999983310
Q ss_pred -------C-EEEe--------------e------------CchhHH-------HHhh------hhhHHHHHHHHHHHhCC
Q 005611 235 -------P-FYQM--------------A------------GSEFVE-------VLVG------VGSARIRDLFKRAKVNK 267 (688)
Q Consensus 235 -------~-~~~v--------------~------------~~~~~~-------~~~g------~~~~~~r~~f~~A~~~~ 267 (688)
+ ++.- + +.++.. +.+| .+++++|..++||..++
T Consensus 419 i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~ 498 (582)
T PRK11176 419 VALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRD 498 (582)
T ss_pred ceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 0 0000 0 000000 0111 17889999999999999
Q ss_pred CeEEEEcccchhhhh
Q 005611 268 PSVIFIDEIDALATR 282 (688)
Q Consensus 268 p~IL~LDEiD~l~~~ 282 (688)
|.|+++||.++..+.
T Consensus 499 ~~ililDEptsaLD~ 513 (582)
T PRK11176 499 SPILILDEATSALDT 513 (582)
T ss_pred CCEEEEECccccCCH
Confidence 999999999986654
No 82
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.59 E-value=4.2e-14 Score=156.73 Aligned_cols=200 Identities=24% Similarity=0.417 Sum_probs=142.0
Q ss_pred CcccccccccHHHHHH---HHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHHH
Q 005611 171 GVKFSDVAGIDEAVEE---LQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV 247 (688)
Q Consensus 171 ~v~f~dV~G~~~~k~~---L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~~ 247 (688)
+-+|+|++|++..... |++++.. ....+++|+||||||||++|+++++..+.+++.+++...
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~--- 72 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEA------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS--- 72 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHc------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc---
Confidence 4679999999988766 6665431 123479999999999999999999999999999887542
Q ss_pred HhhhhhHHHHHHHHHHH----hCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEE
Q 005611 248 LVGVGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 323 (688)
Q Consensus 248 ~~g~~~~~~r~~f~~A~----~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~vi 323 (688)
+...++..+..+. .....+|||||+|.+.... .+.|+..++ ...++
T Consensus 73 ----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~----------------------q~~LL~~le----~~~ii 122 (413)
T PRK13342 73 ----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQ----------------------QDALLPHVE----DGTIT 122 (413)
T ss_pred ----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHH----------------------HHHHHHHhh----cCcEE
Confidence 2234555555553 2356799999999865321 134455443 24566
Q ss_pred EEEecC-C-CCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCc--C-C-CccCHHHHHhhCCCCCHHHHHHHHH
Q 005611 324 FLAATN-R-RDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVK--M-S-DSVDLSSYAKNLPGWTGARLAQLVQ 397 (688)
Q Consensus 324 VIaaTN-~-~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~--~-~-~~~dl~~la~~t~G~s~~dL~~lv~ 397 (688)
+|++|+ . ...+++++++ |+ ..+.+++|+.++...+++..+.... . . .+..+..+++.+.| +.+.+.+++.
T Consensus 123 lI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le 198 (413)
T PRK13342 123 LIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLE 198 (413)
T ss_pred EEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 666543 3 4478999998 87 6899999999999999998775421 1 1 12225677777755 7888888887
Q ss_pred HHHHHHHHhCCccccHHHHHHHHHhhc
Q 005611 398 EAALVAVRKGHESILSSDMDDAVDRLT 424 (688)
Q Consensus 398 ~A~~~A~~~~~~~I~~~di~~Al~~~~ 424 (688)
.+... ...|+.+++.+++....
T Consensus 199 ~~~~~-----~~~It~~~v~~~~~~~~ 220 (413)
T PRK13342 199 LAALG-----VDSITLELLEEALQKRA 220 (413)
T ss_pred HHHHc-----cCCCCHHHHHHHHhhhh
Confidence 76644 45799999999987653
No 83
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.59 E-value=5.7e-15 Score=174.39 Aligned_cols=121 Identities=18% Similarity=0.137 Sum_probs=92.3
Q ss_pred cccceeccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccccc--ccccCCCCcccccc
Q 005611 100 GILSKFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRSKAE--ARVDGSTGVKFSDV 177 (688)
Q Consensus 100 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~v~f~dV 177 (688)
|++.+.+|.+|.|++++|+.|...+..|+..+...+..++....+..|+.++++.......... ......+.++|+||
T Consensus 390 g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I~~~~v 469 (694)
T TIGR03375 390 GVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNV 469 (694)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCccceEEEEEE
Confidence 4677889999999999999999999999999999999999999999999888776332211111 11122356899998
Q ss_pred -cccHHH-HHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 178 -AGIDEA-VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 178 -~G~~~~-k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
+.|+.. +..|+++ ++.++++..+.|+||+|+|||||++.+++.
T Consensus 470 sf~Y~~~~~~vL~~i-----------~l~i~~G~~iaIvG~sGsGKSTLlklL~gl 514 (694)
T TIGR03375 470 SFAYPGQETPALDNV-----------SLTIRPGEKVAIIGRIGSGKSTLLKLLLGL 514 (694)
T ss_pred EEEeCCCCccceeee-----------eEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 666421 1223332 566788889999999999999999999984
No 84
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.59 E-value=1.3e-13 Score=152.03 Aligned_cols=225 Identities=21% Similarity=0.265 Sum_probs=150.7
Q ss_pred CCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEeeCchh
Q 005611 170 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAGSEF 244 (688)
Q Consensus 170 ~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~-----~~~~~~v~~~~~ 244 (688)
+....+.+.|.++..++|...+..... ...+.+++|+||||||||++++.+++++ +..+++++|...
T Consensus 25 ~~~~P~~l~~Re~e~~~l~~~l~~~~~--------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~ 96 (394)
T PRK00411 25 PDYVPENLPHREEQIEELAFALRPALR--------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQID 96 (394)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHhC--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcC
Confidence 344557789999999988887754211 1234579999999999999999999876 577888887543
Q ss_pred H----------HHHhhh-------hhHH-HHHHHHHHH-hCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHH
Q 005611 245 V----------EVLVGV-------GSAR-IRDLFKRAK-VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETT 305 (688)
Q Consensus 245 ~----------~~~~g~-------~~~~-~r~~f~~A~-~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (688)
. ..+.+. .... ...+..... ...+.||+|||+|.+..+.. ...
T Consensus 97 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~------------------~~~ 158 (394)
T PRK00411 97 RTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG------------------NDV 158 (394)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC------------------chH
Confidence 2 111110 1111 122222222 23568999999999872211 123
Q ss_pred HHHHHHHhcCCCCCCcEEEEEecCCCC---cCCccccCCCcc-ceeeeccCCChhhHHHHHHHHhccCc---CCCccCHH
Q 005611 306 LNQLLIELDGFDTGKGVIFLAATNRRD---LLDPALLRPGRF-DRKIRIRAPNAKGRTEILKIHASKVK---MSDSVDLS 378 (688)
Q Consensus 306 l~~LL~~ld~~~~~~~viVIaaTN~~~---~Ld~aL~r~gRf-~~~I~i~~Pd~~eR~~Il~~~l~~~~---~~~~~dl~ 378 (688)
+..++..++... ..++.+|+++|..+ .+++.+.+ || ...+.+++++.++..+|++.++.... .-++..+.
T Consensus 159 l~~l~~~~~~~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~ 235 (394)
T PRK00411 159 LYSLLRAHEEYP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLD 235 (394)
T ss_pred HHHHHHhhhccC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHH
Confidence 455555544333 23688888888754 46777766 55 35789999999999999998875321 11222245
Q ss_pred HHHhhC---CCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHhhc
Q 005611 379 SYAKNL---PGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLT 424 (688)
Q Consensus 379 ~la~~t---~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al~~~~ 424 (688)
.+++.+ .| ..+.+.++|+.|...|..++...|+.+|+..|+++..
T Consensus 236 ~i~~~~~~~~G-d~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~ 283 (394)
T PRK00411 236 LIADLTAREHG-DARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSE 283 (394)
T ss_pred HHHHHHHHhcC-cHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH
Confidence 555555 34 5677778999999999988989999999999998773
No 85
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=8.1e-15 Score=162.45 Aligned_cols=176 Identities=26% Similarity=0.382 Sum_probs=132.5
Q ss_pred ccccccHHHHHHHHHHHHH--hcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhH-------
Q 005611 175 SDVAGIDEAVEELQELVRY--LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV------- 245 (688)
Q Consensus 175 ~dV~G~~~~k~~L~~ii~~--l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~------- 245 (688)
+|-.|++++|+++.+++.. ++. -..++-++|+||||+|||++++.+|+.++..|+.++.....
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrg--------s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRG--------SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKG 482 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcc--------cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcc
Confidence 4569999999999998775 332 23456799999999999999999999999999999865443
Q ss_pred --HHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEE
Q 005611 246 --EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 323 (688)
Q Consensus 246 --~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~vi 323 (688)
.+|+|....++-+.+.+....+| +++|||+|.++.. ..+++...+....+++.+..++.- .||---.-+.|+
T Consensus 483 HRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g---~qGDPasALLElLDPEQNanFlDH--YLdVp~DLSkVL 556 (906)
T KOG2004|consen 483 HRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSG---HQGDPASALLELLDPEQNANFLDH--YLDVPVDLSKVL 556 (906)
T ss_pred cceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCC---CCCChHHHHHHhcChhhccchhhh--ccccccchhheE
Confidence 34888888899999999998888 8999999999832 223333333333333333222211 111111235699
Q ss_pred EEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhc
Q 005611 324 FLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHAS 367 (688)
Q Consensus 324 VIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~ 367 (688)
+|||.|..+.++++|++ |+. .|+++-+..++...|-+.|+-
T Consensus 557 FicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 557 FICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred EEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhh
Confidence 99999999999999999 875 899999999999999988873
No 86
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.59 E-value=1.9e-15 Score=174.49 Aligned_cols=199 Identities=18% Similarity=0.211 Sum_probs=149.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhhhccCCcccceeccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005611 60 VTTVYVVWPIARPFVNIFRGLILGIIENISDYIVDLSGEGGILSKFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTL 139 (688)
Q Consensus 60 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (688)
......++|++..+..+....++.+| .+.+..+.++.|.+.+|+.|...+..|+..+...+..++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~ 296 (567)
T COG1132 232 SRLEALLAPLMLLLSSLGTVLVLALG---------------GFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQ 296 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566888888888888888888 888888899999999999999999999999999999999
Q ss_pred hcCCCCccccccccccccccccccccccCCCCcccccc-cccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCC
Q 005611 140 SRRPKNFRKWDLWQGIDFSRSKAEARVDGSTGVKFSDV-AGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPG 218 (688)
Q Consensus 140 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~f~dV-~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppG 218 (688)
....+..|+.++++..+...............+.|++| ++|++.+..++++ ++.++++..+.|+||+|
T Consensus 297 ~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~I~f~~vsf~y~~~~~vl~~i-----------s~~i~~Ge~vaiVG~sG 365 (567)
T COG1132 297 RASAAAERLFELLDEEPEVEDPPDPLKDTIGSIEFENVSFSYPGKKPVLKDI-----------SFSIEPGEKVAIVGPSG 365 (567)
T ss_pred HHHHHHHHHHHHHcCCccccCCCCCCCCCCCeEEEEEEEEEcCCCCccccCc-----------eEEEcCCCEEEEECCCC
Confidence 99999999998888733222211112233456999999 8887633333333 66688889999999999
Q ss_pred ChHHHHHHHHHHhcCC---------------------------------------------------------------C
Q 005611 219 CGKTLVAKAIAGEAGV---------------------------------------------------------------P 235 (688)
Q Consensus 219 tGKT~La~alA~~~~~---------------------------------------------------------------~ 235 (688)
+||||+++.+.+-... +
T Consensus 366 sGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~ 445 (567)
T COG1132 366 SGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAH 445 (567)
T ss_pred CCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChH
Confidence 9999999999982211 1
Q ss_pred EEEeeCchhHHHHhhh------hhHHHHHHHHHHHhCCCeEEEEcccchhhhhhc
Q 005611 236 FYQMAGSEFVEVLVGV------GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQ 284 (688)
Q Consensus 236 ~~~v~~~~~~~~~~g~------~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~ 284 (688)
-+..+.++.+++.+|+ +++++|..++||..++|+|+++||+++..+..+
T Consensus 446 d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~t 500 (567)
T COG1132 446 EFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTET 500 (567)
T ss_pred HHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHh
Confidence 1111112222333442 689999999999999999999999998766543
No 87
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=4e-14 Score=161.81 Aligned_cols=203 Identities=20% Similarity=0.303 Sum_probs=147.3
Q ss_pred CCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC--------------
Q 005611 170 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------------- 235 (688)
Q Consensus 170 ~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~-------------- 235 (688)
..-+|+||+|++.+++.|++.+.. -+.++.+||+||+|+|||++|+.+|+.+++.
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~-----------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDL-----------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 457899999999999999877653 1345668999999999999999999988763
Q ss_pred ----------EEEeeCchhHHHHhhhhhHHHHHHHHHHHh----CCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHH
Q 005611 236 ----------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE 301 (688)
Q Consensus 236 ----------~~~v~~~~~~~~~~g~~~~~~r~~f~~A~~----~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~ 301 (688)
++.++... ..+...+|.+...+.. ....|+||||+|.+..
T Consensus 80 ~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~-------------------- 133 (647)
T PRK07994 80 REIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR-------------------- 133 (647)
T ss_pred HHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH--------------------
Confidence 12222211 0123445666555432 3456999999998753
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCc-cCHHHH
Q 005611 302 RETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSY 380 (688)
Q Consensus 302 ~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~-~dl~~l 380 (688)
...|.||+.|+ ..+.++.+|.+|+.+..|.+.+++ | ...++|.+++.++..+.++..+...++..+ ..+..+
T Consensus 134 --~a~NALLKtLE--EPp~~v~FIL~Tt~~~kLl~TI~S--R-C~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~I 206 (647)
T PRK07994 134 --HSFNALLKTLE--EPPEHVKFLLATTDPQKLPVTILS--R-CLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLL 206 (647)
T ss_pred --HHHHHHHHHHH--cCCCCeEEEEecCCccccchHHHh--h-heEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 23478888887 345677777788889999999998 8 479999999999999999988865544322 336678
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHH
Q 005611 381 AKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 421 (688)
Q Consensus 381 a~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al~ 421 (688)
++.+.| +.++..+++.++... +...|+.+++...+.
T Consensus 207 a~~s~G-s~R~Al~lldqaia~----~~~~it~~~v~~~lg 242 (647)
T PRK07994 207 ARAADG-SMRDALSLTDQAIAS----GNGQVTTDDVSAMLG 242 (647)
T ss_pred HHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHc
Confidence 888777 899999998876543 334577777766553
No 88
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.57 E-value=1.3e-14 Score=171.10 Aligned_cols=172 Identities=17% Similarity=0.159 Sum_probs=121.3
Q ss_pred cccceeccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccccCCCCcccccc-c
Q 005611 100 GILSKFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRSKAEARVDGSTGVKFSDV-A 178 (688)
Q Consensus 100 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~f~dV-~ 178 (688)
|++.+.+|.+|.|.++++..+...+..|+..+...+..++....+..|+.++++..................+.|+|| +
T Consensus 380 g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~I~~~nvsf 459 (686)
T TIGR03797 380 AISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAKTDPGKLSGAIEVDRVTF 459 (686)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCCCCCCCceEEEEEEEE
Confidence 467778999999999999999999999999999999999999998999888776532211111111112346889998 6
Q ss_pred ccHH-HHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-----------------------
Q 005611 179 GIDE-AVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV----------------------- 234 (688)
Q Consensus 179 G~~~-~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~----------------------- 234 (688)
.|+. .+..|+++ ++.+++++.+.|+||+|+|||||++.+++....
T Consensus 460 ~Y~~~~~~vL~~i-----------sl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 528 (686)
T TIGR03797 460 RYRPDGPLILDDV-----------SLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQ 528 (686)
T ss_pred EcCCCCccceeee-----------EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhc
Confidence 6532 12223333 667888999999999999999999999983210
Q ss_pred -------CE-EE------------eeC------------chhH-------HHHhhh------hhHHHHHHHHHHHhCCCe
Q 005611 235 -------PF-YQ------------MAG------------SEFV-------EVLVGV------GSARIRDLFKRAKVNKPS 269 (688)
Q Consensus 235 -------~~-~~------------v~~------------~~~~-------~~~~g~------~~~~~r~~f~~A~~~~p~ 269 (688)
++ +. .+. .++. ++.+|+ +++++|..++||..++|+
T Consensus 529 i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~ 608 (686)
T TIGR03797 529 LGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPR 608 (686)
T ss_pred cEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 00 00 000 0000 111111 688999999999999999
Q ss_pred EEEEcccchhhhh
Q 005611 270 VIFIDEIDALATR 282 (688)
Q Consensus 270 IL~LDEiD~l~~~ 282 (688)
|+++||.++-.+.
T Consensus 609 iLiLDEpTS~LD~ 621 (686)
T TIGR03797 609 ILLFDEATSALDN 621 (686)
T ss_pred EEEEeCCccCCCH
Confidence 9999999986544
No 89
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=4.7e-14 Score=160.55 Aligned_cols=209 Identities=22% Similarity=0.311 Sum_probs=148.5
Q ss_pred CCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEE--eeCch----
Q 005611 170 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ--MAGSE---- 243 (688)
Q Consensus 170 ~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~--v~~~~---- 243 (688)
..-+|+||+|++.+++.|++.+.. -+.++.+||+||+|+|||++|+++|+.++++-.. ..|..
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~-----------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sC 79 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSC 79 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHH
Confidence 467899999999999999887652 2456789999999999999999999987654210 00110
Q ss_pred ----------hH--HHHhhhhhHHHHHHHHHHHh----CCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHH
Q 005611 244 ----------FV--EVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLN 307 (688)
Q Consensus 244 ----------~~--~~~~g~~~~~~r~~f~~A~~----~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 307 (688)
++ +.....+...+|.++..+.. ....|+||||+|.+.. ...+
T Consensus 80 r~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~----------------------~A~N 137 (709)
T PRK08691 80 TQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK----------------------SAFN 137 (709)
T ss_pred HHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH----------------------HHHH
Confidence 00 00011233457777765432 3457999999987542 2246
Q ss_pred HHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCc-cCHHHHHhhCCC
Q 005611 308 QLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSYAKNLPG 386 (688)
Q Consensus 308 ~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~-~dl~~la~~t~G 386 (688)
.|+..|+. ...++.+|.+||.+..+.+.+++ |+ ..+.|++++.++..+.++..+.+.++.-+ ..+..|++.+.|
T Consensus 138 ALLKtLEE--Pp~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G 212 (709)
T PRK08691 138 AMLKTLEE--PPEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG 212 (709)
T ss_pred HHHHHHHh--CCCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC
Confidence 77777764 34567777788888999888887 76 57888899999999999998887665422 237778888876
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHH
Q 005611 387 WTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 421 (688)
Q Consensus 387 ~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al~ 421 (688)
+.+++.+++..+... +...|+.+++...+.
T Consensus 213 -slRdAlnLLDqaia~----g~g~It~e~V~~lLG 242 (709)
T PRK08691 213 -SMRDALSLLDQAIAL----GSGKVAENDVRQMIG 242 (709)
T ss_pred -CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHc
Confidence 899999999887754 345688887776654
No 90
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.57 E-value=6.1e-14 Score=158.27 Aligned_cols=191 Identities=20% Similarity=0.279 Sum_probs=135.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEeeCchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhh
Q 005611 209 HGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR 283 (688)
Q Consensus 209 ~gvLL~GppGtGKT~La~alA~~~-----~~~~~~v~~~~~~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~ 283 (688)
+.++|||++|+|||+|++++++++ +..++++++.+|.+.+...........|.+ +..++++|+|||++.+..+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~-~y~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRR-RYREMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHH-HhhcCCEEEEehhccccCCH
Confidence 349999999999999999999976 567899999998877665433333334443 23467899999999986543
Q ss_pred cCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCC-CC---cCCccccCCCcc--ceeeeccCCChhh
Q 005611 284 QGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNR-RD---LLDPALLRPGRF--DRKIRIRAPNAKG 357 (688)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~-~~---~Ld~aL~r~gRf--~~~I~i~~Pd~~e 357 (688)
. ...+...++|.+. .....+|| |+|. |. .+++.|++ || ..++.+..||.+.
T Consensus 394 ~-------------tqeeLF~l~N~l~-------e~gk~III-TSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~Et 450 (617)
T PRK14086 394 S-------------TQEEFFHTFNTLH-------NANKQIVL-SSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELET 450 (617)
T ss_pred H-------------HHHHHHHHHHHHH-------hcCCCEEE-ecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHH
Confidence 2 1222223333332 22233444 4554 43 47788998 66 5688999999999
Q ss_pred HHHHHHHHhccCcCCCccC-HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHhhcc
Q 005611 358 RTEILKIHASKVKMSDSVD-LSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTV 425 (688)
Q Consensus 358 R~~Il~~~l~~~~~~~~~d-l~~la~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al~~~~~ 425 (688)
|.+||+.++....+.-+.+ +..|+.+..+ +.++|+.++++....+...+ ..|+.+.+++.++.+..
T Consensus 451 R~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~~~~-~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 451 RIAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFASLNR-QPVDLGLTEIVLRDLIP 517 (617)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhhc
Confidence 9999999987766553333 6677777766 89999999999877776654 66999999998876543
No 91
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.57 E-value=4.3e-14 Score=168.23 Aligned_cols=217 Identities=19% Similarity=0.268 Sum_probs=149.2
Q ss_pred CcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEee
Q 005611 171 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMA 240 (688)
Q Consensus 171 ~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~----------~~~~~~v~ 240 (688)
.-++++++|.++....+.++ +.. +...+++|+||||||||++++.+|+.. +.+++.++
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~---l~r---------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~ 250 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDI---LLR---------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLD 250 (852)
T ss_pred CCCCCcccCCHHHHHHHHHH---Hhc---------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEee
Confidence 44788999999875544443 222 223478999999999999999999875 24467777
Q ss_pred CchhHH--HHhhhhhHHHHHHHHHHHh-CCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCC
Q 005611 241 GSEFVE--VLVGVGSARIRDLFKRAKV-NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD 317 (688)
Q Consensus 241 ~~~~~~--~~~g~~~~~~r~~f~~A~~-~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~ 317 (688)
.+.+.. .+.|+.+.+++..|..+.. ..++||||||+|.+.+.++... . .. .-+-|...+
T Consensus 251 l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~-~----------~d---~~n~Lkp~l---- 312 (852)
T TIGR03345 251 LGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAG-Q----------GD---AANLLKPAL---- 312 (852)
T ss_pred hhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccc-c----------cc---HHHHhhHHh----
Confidence 766552 4678888999999998864 4688999999999987643211 0 00 112233333
Q ss_pred CCCcEEEEEecCCCC-----cCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCC-----CccCHHHHHhhCCCC
Q 005611 318 TGKGVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-----DSVDLSSYAKNLPGW 387 (688)
Q Consensus 318 ~~~~viVIaaTN~~~-----~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~-----~~~dl~~la~~t~G~ 387 (688)
.+..+.+|+||+..+ .+|++|.| ||. .|.++.|+.+++.+||+.+....... .+..+..++..+.+|
T Consensus 313 ~~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 313 ARGELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred hCCCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 346789999998743 48999999 996 89999999999999987666543221 222356666666654
Q ss_pred -----CHHHHHHHHHHHHHHHHHh-CCccccHHHHHHHH
Q 005611 388 -----TGARLAQLVQEAALVAVRK-GHESILSSDMDDAV 420 (688)
Q Consensus 388 -----s~~dL~~lv~~A~~~A~~~-~~~~I~~~di~~Al 420 (688)
-|.-...++.+|+.....+ ....+..+++.+.+
T Consensus 390 i~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~ 428 (852)
T TIGR03345 390 IPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRI 428 (852)
T ss_pred cccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 3566778889887766543 33445555555444
No 92
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.56 E-value=7.3e-14 Score=141.86 Aligned_cols=205 Identities=16% Similarity=0.220 Sum_probs=135.2
Q ss_pred CCccccccc--ccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchh
Q 005611 170 TGVKFSDVA--GIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEF 244 (688)
Q Consensus 170 ~~v~f~dV~--G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~ 244 (688)
...+|++.. +.+...+.+++++. ...+..++|+||+|||||++|+++++.+ +.++++++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 456777775 34556666666532 1345689999999999999999999876 468888998877
Q ss_pred HHHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEE
Q 005611 245 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF 324 (688)
Q Consensus 245 ~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viV 324 (688)
.... ...+... ..+.+|+|||+|.+.... .....+..++..+. ..+..+|
T Consensus 78 ~~~~--------~~~~~~~--~~~~lLvIDdi~~l~~~~-----------------~~~~~L~~~l~~~~---~~~~~iI 127 (226)
T TIGR03420 78 AQAD--------PEVLEGL--EQADLVCLDDVEAIAGQP-----------------EWQEALFHLYNRVR---EAGGRLL 127 (226)
T ss_pred HHhH--------HHHHhhc--ccCCEEEEeChhhhcCCh-----------------HHHHHHHHHHHHHH---HcCCeEE
Confidence 5432 1222221 234699999999875321 11122233333322 2223444
Q ss_pred EEecCCCCcCC---ccccCCCcc--ceeeeccCCChhhHHHHHHHHhccCcCC-CccCHHHHHhhCCCCCHHHHHHHHHH
Q 005611 325 LAATNRRDLLD---PALLRPGRF--DRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQE 398 (688)
Q Consensus 325 IaaTN~~~~Ld---~aL~r~gRf--~~~I~i~~Pd~~eR~~Il~~~l~~~~~~-~~~dl~~la~~t~G~s~~dL~~lv~~ 398 (688)
++++..+..++ +.+.+ |+ ..++++++|+.+++..+++.++.+.... ++.-+..+++.++| +.+++.+++++
T Consensus 128 its~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~g-n~r~L~~~l~~ 204 (226)
T TIGR03420 128 IAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSR-DMGSLMALLDA 204 (226)
T ss_pred EECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHH
Confidence 44444444432 56676 55 4789999999999999999887654443 22236777887666 99999999999
Q ss_pred HHHHHHHhCCccccHHHHHHHH
Q 005611 399 AALVAVRKGHESILSSDMDDAV 420 (688)
Q Consensus 399 A~~~A~~~~~~~I~~~di~~Al 420 (688)
+...+..++ ..|+.+.+.+.+
T Consensus 205 ~~~~~~~~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 205 LDRASLAAK-RKITIPFVKEVL 225 (226)
T ss_pred HHHHHHHhC-CCCCHHHHHHHh
Confidence 887665654 578888887765
No 93
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=9.3e-14 Score=161.00 Aligned_cols=206 Identities=19% Similarity=0.246 Sum_probs=141.9
Q ss_pred CCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEE-E----eeCch-
Q 005611 170 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFY-Q----MAGSE- 243 (688)
Q Consensus 170 ~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~-~----v~~~~- 243 (688)
.+.+|++|+|++.+++.|++.+.. -+.++.+||+||+|||||++|+++|+.+++.-. . ..|..
T Consensus 11 RP~tFddIIGQe~Iv~~LknaI~~-----------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC 79 (944)
T PRK14949 11 RPATFEQMVGQSHVLHALTNALTQ-----------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSC 79 (944)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHH
Confidence 457899999999999999887642 144566899999999999999999999876411 0 00100
Q ss_pred --hHHH-------Hh---hhhhHHHHHHHHHHHh----CCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHH
Q 005611 244 --FVEV-------LV---GVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLN 307 (688)
Q Consensus 244 --~~~~-------~~---g~~~~~~r~~f~~A~~----~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 307 (688)
+.+. +- ..+...+|.+...+.. ....|+||||+|.+.. ..++
T Consensus 80 ~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~----------------------eAqN 137 (944)
T PRK14949 80 VEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR----------------------SSFN 137 (944)
T ss_pred HHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCH----------------------HHHH
Confidence 0000 00 0123345655554432 3346999999999742 2347
Q ss_pred HHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCc-cCHHHHHhhCCC
Q 005611 308 QLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSYAKNLPG 386 (688)
Q Consensus 308 ~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~-~dl~~la~~t~G 386 (688)
.||..|+. .+.++++|.+|+.+..|.+.+++ |+ .+++|++++.++..+.++..+...++.-+ ..+..+++.+.|
T Consensus 138 ALLKtLEE--PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G 212 (944)
T PRK14949 138 ALLKTLEE--PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG 212 (944)
T ss_pred HHHHHHhc--cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 78888873 44567777778888889999988 75 68999999999999999888866443322 236777888777
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCccccHHHHHH
Q 005611 387 WTGARLAQLVQEAALVAVRKGHESILSSDMDD 418 (688)
Q Consensus 387 ~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~ 418 (688)
+.|++.+++..+... +...++.+++..
T Consensus 213 -d~R~ALnLLdQala~----~~~~It~~~V~~ 239 (944)
T PRK14949 213 -SMRDALSLTDQAIAF----GGGQVMLTQVQT 239 (944)
T ss_pred -CHHHHHHHHHHHHHh----cCCcccHHHHHH
Confidence 899999999887732 223455555443
No 94
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=8.1e-14 Score=155.02 Aligned_cols=202 Identities=23% Similarity=0.305 Sum_probs=149.6
Q ss_pred CCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCC---------------
Q 005611 170 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV--------------- 234 (688)
Q Consensus 170 ~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~--------------- 234 (688)
.+.+|+||+|++.+++.|++.+.. -+.++.+||+||+|+||||+|+.+|+.+++
T Consensus 8 RP~~f~dliGQe~vv~~L~~a~~~-----------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C 76 (491)
T PRK14964 8 RPSSFKDLVGQDVLVRILRNAFTL-----------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNC 76 (491)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHH
Confidence 357899999999999988876542 245678999999999999999999997643
Q ss_pred ---------CEEEeeCchhHHHHhhhhhHHHHHHHHHHHh----CCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHH
Q 005611 235 ---------PFYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE 301 (688)
Q Consensus 235 ---------~~~~v~~~~~~~~~~g~~~~~~r~~f~~A~~----~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~ 301 (688)
.++.+++++ ..+...+|.+++.+.. ....|++|||+|.+..
T Consensus 77 ~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~-------------------- 130 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN-------------------- 130 (491)
T ss_pred HHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH--------------------
Confidence 233443321 1234557777776643 2456999999988642
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCC-ccCHHHH
Q 005611 302 RETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLSSY 380 (688)
Q Consensus 302 ~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~-~~dl~~l 380 (688)
..+|.|+..++. .+..+++|.+|+.++.+.+.+++ |+ ..+++.+++.++..+.++..+.+.+..- +..+..+
T Consensus 131 --~A~NaLLK~LEe--Pp~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lI 203 (491)
T PRK14964 131 --SAFNALLKTLEE--PAPHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLI 203 (491)
T ss_pred --HHHHHHHHHHhC--CCCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 234778888874 44567777778888889999988 75 5789999999999999998887665442 2346777
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 005611 381 AKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 420 (688)
Q Consensus 381 a~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al 420 (688)
++.+.| +.+++.+++..+...+ ...|+.+++.+.+
T Consensus 204 a~~s~G-slR~alslLdqli~y~----~~~It~e~V~~ll 238 (491)
T PRK14964 204 AENSSG-SMRNALFLLEQAAIYS----NNKISEKSVRDLL 238 (491)
T ss_pred HHHcCC-CHHHHHHHHHHHHHhc----CCCCCHHHHHHHH
Confidence 888876 8999999999887654 2478888887754
No 95
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.56 E-value=1.3e-13 Score=140.48 Aligned_cols=202 Identities=13% Similarity=0.157 Sum_probs=134.3
Q ss_pred CCCccccccc--ccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCch
Q 005611 169 STGVKFSDVA--GIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSE 243 (688)
Q Consensus 169 ~~~v~f~dV~--G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~ 243 (688)
....+|++.. +.+.+...++++.. +...+..++|+||+|||||+|++++++++ +.+++++++.+
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 3567899975 33555555555433 12345689999999999999999999875 67888888877
Q ss_pred hHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCc-E
Q 005611 244 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKG-V 322 (688)
Q Consensus 244 ~~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~-v 322 (688)
+.... .....+.+|+|||+|.+.... ...+..++... ..... +
T Consensus 81 ~~~~~--------------~~~~~~~~liiDdi~~l~~~~-------------------~~~L~~~~~~~---~~~~~~~ 124 (227)
T PRK08903 81 PLLAF--------------DFDPEAELYAVDDVERLDDAQ-------------------QIALFNLFNRV---RAHGQGA 124 (227)
T ss_pred hHHHH--------------hhcccCCEEEEeChhhcCchH-------------------HHHHHHHHHHH---HHcCCcE
Confidence 54321 112346799999999864221 12223333332 22333 3
Q ss_pred EEEEecCCCC--cCCccccCCCcc--ceeeeccCCChhhHHHHHHHHhccCcCCCcc-CHHHHHhhCCCCCHHHHHHHHH
Q 005611 323 IFLAATNRRD--LLDPALLRPGRF--DRKIRIRAPNAKGRTEILKIHASKVKMSDSV-DLSSYAKNLPGWTGARLAQLVQ 397 (688)
Q Consensus 323 iVIaaTN~~~--~Ld~aL~r~gRf--~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~-dl~~la~~t~G~s~~dL~~lv~ 397 (688)
++++++..|. .+.+.+.+ || ...+++++|+.+++..+++..+.+.++.-+. -+..+++.++| +.+++.++++
T Consensus 125 vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~ 201 (227)
T PRK08903 125 LLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLD 201 (227)
T ss_pred EEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHH
Confidence 4444443332 24566766 66 5799999999999999998877655443222 36778887777 9999999999
Q ss_pred HHHHHHHHhCCccccHHHHHHHHH
Q 005611 398 EAALVAVRKGHESILSSDMDDAVD 421 (688)
Q Consensus 398 ~A~~~A~~~~~~~I~~~di~~Al~ 421 (688)
.-...|... +..|+...+++++.
T Consensus 202 ~l~~~~~~~-~~~i~~~~~~~~l~ 224 (227)
T PRK08903 202 ALDRYSLEQ-KRPVTLPLLREMLA 224 (227)
T ss_pred HHHHHHHHh-CCCCCHHHHHHHHh
Confidence 866666444 47899999888875
No 96
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=1.1e-13 Score=158.06 Aligned_cols=202 Identities=19% Similarity=0.299 Sum_probs=146.5
Q ss_pred CCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC--------------
Q 005611 170 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------------- 235 (688)
Q Consensus 170 ~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~-------------- 235 (688)
..-+|+||+|++.+++.|++.+.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 11 RP~~f~dviGQe~vv~~L~~~l~~-----------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg 79 (618)
T PRK14951 11 RPRSFSEMVGQEHVVQALTNALTQ-----------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCG 79 (618)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCC
Confidence 457899999999999999887653 2445678999999999999999999988752
Q ss_pred ---------------EEEeeCchhHHHHhhhhhHHHHHHHHHHHhC----CCeEEEEcccchhhhhhcCCccCcchhhhh
Q 005611 236 ---------------FYQMAGSEFVEVLVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYN 296 (688)
Q Consensus 236 ---------------~~~v~~~~~~~~~~g~~~~~~r~~f~~A~~~----~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~ 296 (688)
++.++... ..+...+|.++..+... ...|++|||+|.+...
T Consensus 80 ~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~-------------- 139 (618)
T PRK14951 80 VCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT-------------- 139 (618)
T ss_pred ccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH--------------
Confidence 11111110 11334567777665432 2469999999987532
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCc-c
Q 005611 297 AATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-V 375 (688)
Q Consensus 297 ~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~-~ 375 (688)
..|.|+..++. ....+.+|.+|+.+..+.+.+++ |+ ..+++..++.++..+.++..+.+.++.-+ .
T Consensus 140 --------a~NaLLKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~ 206 (618)
T PRK14951 140 --------AFNAMLKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQ 206 (618)
T ss_pred --------HHHHHHHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 24677877763 44567777777888888888888 65 68999999999999999988876655433 2
Q ss_pred CHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 005611 376 DLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 420 (688)
Q Consensus 376 dl~~la~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al 420 (688)
.+..+++.+.| +.+++.+++.++... +...|+.+++.+.+
T Consensus 207 AL~~La~~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~L 246 (618)
T PRK14951 207 ALRLLARAARG-SMRDALSLTDQAIAF----GSGQLQEAAVRQML 246 (618)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 36778888877 899999998777654 34568877776654
No 97
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.55 E-value=4.3e-14 Score=163.19 Aligned_cols=166 Identities=14% Similarity=0.112 Sum_probs=112.9
Q ss_pred eccccChhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCCcccccccccccccc-ccccccccCCCCcccccc-cccH
Q 005611 105 FYEFYTFGGLSASLEMLKPIT-LVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSR-SKAEARVDGSTGVKFSDV-AGID 181 (688)
Q Consensus 105 ~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~v~f~dV-~G~~ 181 (688)
.+|.+|.|.+++|+.|+..+. .|+..+..++..++....+..|+.++++...... ..........+.+.|++| +.|+
T Consensus 270 ~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~ 349 (574)
T PRK11160 270 VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFPTTSTAAADQVSLTLNNVSFTYP 349 (574)
T ss_pred hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccCCCCCCCeEEEEEEEEECC
Confidence 478899999999998876544 4777777777888888888889888876533211 111111123456899998 6664
Q ss_pred HH-HHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcC---------------------------
Q 005611 182 EA-VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG--------------------------- 233 (688)
Q Consensus 182 ~~-k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~--------------------------- 233 (688)
+. +..|+++ ++.++++..+.|+||+|+|||||++.+++...
T Consensus 350 ~~~~~il~~i-----------~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 418 (574)
T PRK11160 350 DQPQPVLKGL-----------SLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISV 418 (574)
T ss_pred CCCCcceecc-----------eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeE
Confidence 32 1223333 56678889999999999999999999998320
Q ss_pred ------------------------------------CCEEEeeCchhHHHHhhh------hhHHHHHHHHHHHhCCCeEE
Q 005611 234 ------------------------------------VPFYQMAGSEFVEVLVGV------GSARIRDLFKRAKVNKPSVI 271 (688)
Q Consensus 234 ------------------------------------~~~~~v~~~~~~~~~~g~------~~~~~r~~f~~A~~~~p~IL 271 (688)
..-+..+ ++.+++.+|+ +++++|..++||..++|+|+
T Consensus 419 v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~il 497 (574)
T PRK11160 419 VSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLL 497 (574)
T ss_pred EcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 0000001 1112222222 67899999999999999999
Q ss_pred EEcccchhhhh
Q 005611 272 FIDEIDALATR 282 (688)
Q Consensus 272 ~LDEiD~l~~~ 282 (688)
++||..+-.+.
T Consensus 498 ilDE~ts~lD~ 508 (574)
T PRK11160 498 LLDEPTEGLDA 508 (574)
T ss_pred EEeCCcccCCH
Confidence 99999885543
No 98
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.55 E-value=5.6e-14 Score=160.95 Aligned_cols=171 Identities=16% Similarity=0.150 Sum_probs=118.8
Q ss_pred ccceeccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccccCCCCcccccc-cc
Q 005611 101 ILSKFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRSKAEARVDGSTGVKFSDV-AG 179 (688)
Q Consensus 101 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~f~dV-~G 179 (688)
++...+|.+|.|.+.+++.|...+..|+..+...+...++...+..|++++++..+.............+.+.|++| +.
T Consensus 250 ~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~~~~~~~~~~i~~~~v~f~ 329 (529)
T TIGR02857 250 GFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKAPVTAAPAPSLEFSGLSVA 329 (529)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcCCCCCCCCeEEEEEEEEE
Confidence 45556889999999999999999999999999999999999999999988876422111111111111246889998 66
Q ss_pred cHHHH-HHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCC----------C------------E
Q 005611 180 IDEAV-EELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV----------P------------F 236 (688)
Q Consensus 180 ~~~~k-~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~----------~------------~ 236 (688)
|++.. ..++++ ++.++++..+.|+||+|+|||||++.+++.... + +
T Consensus 330 y~~~~~~il~~i-----------~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i 398 (529)
T TIGR02857 330 YPGRRAPALRPV-----------SFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQI 398 (529)
T ss_pred CCCCCcccccce-----------eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhhe
Confidence 64321 223332 566788889999999999999999999983210 0 0
Q ss_pred EEe-------e---------------------------Cch-------hHHHHhhh------hhHHHHHHHHHHHhCCCe
Q 005611 237 YQM-------A---------------------------GSE-------FVEVLVGV------GSARIRDLFKRAKVNKPS 269 (688)
Q Consensus 237 ~~v-------~---------------------------~~~-------~~~~~~g~------~~~~~r~~f~~A~~~~p~ 269 (688)
-.+ + ..+ .+++.+|+ +++++|..++||..++|.
T Consensus 399 ~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ 478 (529)
T TIGR02857 399 AWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAP 478 (529)
T ss_pred EEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCC
Confidence 000 0 000 01112222 688999999999999999
Q ss_pred EEEEcccchhhhh
Q 005611 270 VIFIDEIDALATR 282 (688)
Q Consensus 270 IL~LDEiD~l~~~ 282 (688)
|+++||..+-.+.
T Consensus 479 ililDE~ts~lD~ 491 (529)
T TIGR02857 479 LLLLDEPTAHLDA 491 (529)
T ss_pred EEEEeCcccccCH
Confidence 9999999886544
No 99
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.54 E-value=2.1e-13 Score=146.99 Aligned_cols=210 Identities=22% Similarity=0.285 Sum_probs=134.9
Q ss_pred CCCCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcC-----CCEEEeeCc
Q 005611 168 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG-----VPFYQMAGS 242 (688)
Q Consensus 168 ~~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~-----~~~~~v~~~ 242 (688)
...+-+|++++|.+++++.|.+.+.. ....+++|+||||||||++|+++++++. .+++.++++
T Consensus 8 ky~P~~~~~~~g~~~~~~~L~~~~~~------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~ 75 (337)
T PRK12402 8 KYRPALLEDILGQDEVVERLSRAVDS------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVA 75 (337)
T ss_pred hhCCCcHHHhcCCHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechh
Confidence 33566799999999999998887531 1122699999999999999999999874 346778877
Q ss_pred hhHHHH-------------hhh-------hhHHHHHHHHHHHh-----CCCeEEEEcccchhhhhhcCCccCcchhhhhh
Q 005611 243 EFVEVL-------------VGV-------GSARIRDLFKRAKV-----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNA 297 (688)
Q Consensus 243 ~~~~~~-------------~g~-------~~~~~r~~f~~A~~-----~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~ 297 (688)
++.... .+. ....++..+..... ..+.+|+|||+|.+...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~--------------- 140 (337)
T PRK12402 76 DFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED--------------- 140 (337)
T ss_pred hhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH---------------
Confidence 654321 010 11223333333222 23469999999986422
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCC-CccC
Q 005611 298 ATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVD 376 (688)
Q Consensus 298 ~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~-~~~d 376 (688)
.. +.|...++... ....+|.+|+.+..+.+.+.+ |+ ..+++++|+.++..++++..+.+.+.. ++..
T Consensus 141 ----~~---~~L~~~le~~~--~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~a 208 (337)
T PRK12402 141 ----AQ---QALRRIMEQYS--RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDG 208 (337)
T ss_pred ----HH---HHHHHHHHhcc--CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 11 23333343322 223444566666777778877 64 578999999999999999988766544 2334
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHh
Q 005611 377 LSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDR 422 (688)
Q Consensus 377 l~~la~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al~~ 422 (688)
+..++..+.| +.+++.+.+.. .+ . +...|+.+++.+++.+
T Consensus 209 l~~l~~~~~g-dlr~l~~~l~~---~~-~-~~~~It~~~v~~~~~~ 248 (337)
T PRK12402 209 LELIAYYAGG-DLRKAILTLQT---AA-L-AAGEITMEAAYEALGD 248 (337)
T ss_pred HHHHHHHcCC-CHHHHHHHHHH---HH-H-cCCCCCHHHHHHHhCC
Confidence 7777877754 55555544443 33 2 2347999999887653
No 100
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.54 E-value=3.6e-13 Score=137.96 Aligned_cols=209 Identities=13% Similarity=0.154 Sum_probs=132.4
Q ss_pred CCCCccccccc-c-cHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcC---CCEEEeeCc
Q 005611 168 GSTGVKFSDVA-G-IDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG---VPFYQMAGS 242 (688)
Q Consensus 168 ~~~~v~f~dV~-G-~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~---~~~~~v~~~ 242 (688)
..+..+|++.+ | ...+...++++.. . ..+..++|+||||||||+|++++++++. ..+.+++..
T Consensus 15 ~~~~~~fd~f~~~~n~~a~~~l~~~~~---~---------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 15 LPDDETFASFYPGDNDSLLAALQNALR---Q---------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD 82 (235)
T ss_pred CCCcCCccccccCccHHHHHHHHHHHh---C---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence 34567888864 4 3445555554421 1 1234799999999999999999998763 445566655
Q ss_pred hhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcE
Q 005611 243 EFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGV 322 (688)
Q Consensus 243 ~~~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~v 322 (688)
+..... ......+. +..+|+|||++.+..+. ..+..+..++..+. ..++..
T Consensus 83 ~~~~~~-----~~~~~~~~-----~~dlliiDdi~~~~~~~-----------------~~~~~lf~l~n~~~--e~g~~~ 133 (235)
T PRK08084 83 KRAWFV-----PEVLEGME-----QLSLVCIDNIECIAGDE-----------------LWEMAIFDLYNRIL--ESGRTR 133 (235)
T ss_pred HHhhhh-----HHHHHHhh-----hCCEEEEeChhhhcCCH-----------------HHHHHHHHHHHHHH--HcCCCe
Confidence 432211 11122222 23589999999875432 12222333333221 112224
Q ss_pred EEEEecCCCCc---CCccccCCCccc--eeeeccCCChhhHHHHHHHHhccCcCCCcc-CHHHHHhhCCCCCHHHHHHHH
Q 005611 323 IFLAATNRRDL---LDPALLRPGRFD--RKIRIRAPNAKGRTEILKIHASKVKMSDSV-DLSSYAKNLPGWTGARLAQLV 396 (688)
Q Consensus 323 iVIaaTN~~~~---Ld~aL~r~gRf~--~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~-dl~~la~~t~G~s~~dL~~lv 396 (688)
+++++++.|.. +.|.|++ |+. .++++++|+.++|.++++..+...++.-+. -+..++++.+| +.+.+.+++
T Consensus 134 li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l 210 (235)
T PRK08084 134 LLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTL 210 (235)
T ss_pred EEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHH
Confidence 56666666665 5789998 775 799999999999999999877654443222 37778888877 899999999
Q ss_pred HHHHHHHHHhCCccccHHHHHHHHH
Q 005611 397 QEAALVAVRKGHESILSSDMDDAVD 421 (688)
Q Consensus 397 ~~A~~~A~~~~~~~I~~~di~~Al~ 421 (688)
+.....+.. .++.||.+.+++++.
T Consensus 211 ~~l~~~~l~-~~~~it~~~~k~~l~ 234 (235)
T PRK08084 211 DQLDRASIT-AQRKLTIPFVKEILK 234 (235)
T ss_pred HHHHHHHHh-cCCCCCHHHHHHHHc
Confidence 986534433 345699888887753
No 101
>PLN03025 replication factor C subunit; Provisional
Probab=99.54 E-value=1.7e-13 Score=146.77 Aligned_cols=202 Identities=19% Similarity=0.219 Sum_probs=133.4
Q ss_pred cCCCCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-----CEEEeeC
Q 005611 167 DGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV-----PFYQMAG 241 (688)
Q Consensus 167 ~~~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~-----~~~~v~~ 241 (688)
+...+-+|+|++|++++++.|+.++.. . +. .+++|+||||||||++|+++|+++.. .++.++.
T Consensus 5 ~kyrP~~l~~~~g~~~~~~~L~~~~~~---~--------~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 5 EKYRPTKLDDIVGNEDAVSRLQVIARD---G--------NM-PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred hhcCCCCHHHhcCcHHHHHHHHHHHhc---C--------CC-ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 344567899999999999988876442 1 12 25899999999999999999998733 3555665
Q ss_pred chhHHHHhhhhhHHHHHHHHHH---H----hCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhc
Q 005611 242 SEFVEVLVGVGSARIRDLFKRA---K----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD 314 (688)
Q Consensus 242 ~~~~~~~~g~~~~~~r~~f~~A---~----~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld 314 (688)
++... ...++..+... . ...+.|++|||+|.+.... + +.|+..++
T Consensus 73 sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~a-------------------q---~aL~~~lE 124 (319)
T PLN03025 73 SDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGA-------------------Q---QALRRTME 124 (319)
T ss_pred ccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHH-------------------H---HHHHHHHh
Confidence 54321 12233333221 1 1246799999999975332 1 33444444
Q ss_pred CCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCC-CccCHHHHHhhCCCCCHHHHH
Q 005611 315 GFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLA 393 (688)
Q Consensus 315 ~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~-~~~dl~~la~~t~G~s~~dL~ 393 (688)
.. ..++.+|.+||.++.+.+++++ |+ ..+++++|+.++....++..+++.++. ++..+..++....| +.+.+.
T Consensus 125 ~~--~~~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~al 198 (319)
T PLN03025 125 IY--SNTTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQAL 198 (319)
T ss_pred cc--cCCceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 32 2344566678888888899998 75 589999999999999999888765543 22347777777665 555555
Q ss_pred HHHHHHHHHHHHhCCccccHHHHHHH
Q 005611 394 QLVQEAALVAVRKGHESILSSDMDDA 419 (688)
Q Consensus 394 ~lv~~A~~~A~~~~~~~I~~~di~~A 419 (688)
+.++. .+ .+...|+.+++...
T Consensus 199 n~Lq~---~~--~~~~~i~~~~v~~~ 219 (319)
T PLN03025 199 NNLQA---TH--SGFGFVNQENVFKV 219 (319)
T ss_pred HHHHH---HH--hcCCCCCHHHHHHH
Confidence 55542 22 13456888877654
No 102
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.54 E-value=4.5e-14 Score=163.24 Aligned_cols=122 Identities=15% Similarity=0.116 Sum_probs=90.9
Q ss_pred CcccceeccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccccCCCCcccccc-
Q 005611 99 GGILSKFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRSKAEARVDGSTGVKFSDV- 177 (688)
Q Consensus 99 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~f~dV- 177 (688)
.|++.+.+|.+|.|.+++++.+...+..|+..+...+...+..+.+..|+.++++..+...............++|++|
T Consensus 258 ~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~ 337 (571)
T TIGR02203 258 IALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVT 337 (571)
T ss_pred HHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCeEEEEEEE
Confidence 3567788999999999999999999999999999999999999999988877766532221111111122346888888
Q ss_pred cccHHH-HHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 178 AGIDEA-VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 178 ~G~~~~-k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
+.+++. +..++++ ++.++++..++|+|++|+|||||++.+++.
T Consensus 338 f~y~~~~~~il~~i-----------nl~i~~G~~v~IvG~sGsGKSTLl~lL~gl 381 (571)
T TIGR02203 338 FRYPGRDRPALDSI-----------SLVIEPGETVALVGRSGSGKSTLVNLIPRF 381 (571)
T ss_pred EEcCCCCCccccCe-----------eEEecCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 555431 1122222 566788889999999999999999999983
No 103
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=3.1e-13 Score=152.08 Aligned_cols=202 Identities=21% Similarity=0.311 Sum_probs=144.3
Q ss_pred CCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC--------------
Q 005611 170 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------------- 235 (688)
Q Consensus 170 ~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~-------------- 235 (688)
.+.+|+||+|++.+++.|++.+.. -+.++.+||+||||||||++|+++|+.+.+.
T Consensus 9 RP~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~ 77 (504)
T PRK14963 9 RPITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL 77 (504)
T ss_pred CCCCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH
Confidence 467899999999999999888653 1345668999999999999999999988541
Q ss_pred ---------EEEeeCchhHHHHhhhhhHHHHHHHHHHH----hCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHH
Q 005611 236 ---------FYQMAGSEFVEVLVGVGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQER 302 (688)
Q Consensus 236 ---------~~~v~~~~~~~~~~g~~~~~~r~~f~~A~----~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~ 302 (688)
++.++... ..+...+|.+...+. ...+.|++|||+|.+..
T Consensus 78 ~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~--------------------- 130 (504)
T PRK14963 78 AVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSK--------------------- 130 (504)
T ss_pred HHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccCH---------------------
Confidence 23333221 112334555544433 23567999999987532
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCc-cCHHHHH
Q 005611 303 ETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSYA 381 (688)
Q Consensus 303 ~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~-~dl~~la 381 (688)
..++.|+..++. ...++++|.+||.+..+.+.+.+ |+ ..++|++|+.++..+.++..+.+.++..+ ..+..++
T Consensus 131 -~a~naLLk~LEe--p~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia 204 (504)
T PRK14963 131 -SAFNALLKTLEE--PPEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVA 204 (504)
T ss_pred -HHHHHHHHHHHh--CCCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 234677777764 33566777778888999999988 75 47999999999999999998876655432 2367777
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHH
Q 005611 382 KNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 421 (688)
Q Consensus 382 ~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al~ 421 (688)
..+.| +.+++.++++.+... ...|+.+++.+.+.
T Consensus 205 ~~s~G-dlR~aln~Lekl~~~-----~~~It~~~V~~~l~ 238 (504)
T PRK14963 205 RLADG-AMRDAESLLERLLAL-----GTPVTRKQVEEALG 238 (504)
T ss_pred HHcCC-CHHHHHHHHHHHHhc-----CCCCCHHHHHHHHC
Confidence 77776 788888888876432 24688888877653
No 104
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.53 E-value=4.2e-14 Score=166.95 Aligned_cols=121 Identities=21% Similarity=0.158 Sum_probs=91.8
Q ss_pred cccceeccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccc-ccccccCCCCcccccc-
Q 005611 100 GILSKFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRSK-AEARVDGSTGVKFSDV- 177 (688)
Q Consensus 100 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~v~f~dV- 177 (688)
|++.+.+|.+|.|++++|..+...+..|+..+...+..++....+..|+.++++..+..... ..........+.|++|
T Consensus 383 g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~i~~~~vs 462 (694)
T TIGR01846 383 GAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPELRGAITFENIR 462 (694)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCCeEEEEEEE
Confidence 46778899999999999999999999999999999999999999999998887653322111 1111222356889998
Q ss_pred cccHHH-HHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 178 AGIDEA-VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 178 ~G~~~~-k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
+.|++. +..++++ ++.++++..+.|+||+|+|||||++.+++.
T Consensus 463 f~y~~~~~~il~~i-----------~l~i~~G~~vaivG~sGsGKSTL~~ll~g~ 506 (694)
T TIGR01846 463 FRYAPDSPEVLSNL-----------NLDIKPGEFIGIVGPSGSGKSTLTKLLQRL 506 (694)
T ss_pred EEcCCCCccccccc-----------eEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 655321 2223332 566788889999999999999999999983
No 105
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.53 E-value=6.8e-14 Score=165.34 Aligned_cols=172 Identities=20% Similarity=0.218 Sum_probs=122.2
Q ss_pred cccceeccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccccc-ccccCCCCcccccc-
Q 005611 100 GILSKFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRSKAE-ARVDGSTGVKFSDV- 177 (688)
Q Consensus 100 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~v~f~dV- 177 (688)
|++.+.+|.+|.|++++++.|...+..|+..+...+..++....+..|++++++..+....... ...+....++|+||
T Consensus 406 g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~nVs 485 (711)
T TIGR00958 406 GGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLNLEGLIEFQDVS 485 (711)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCeEEEEEEE
Confidence 4567789999999999999999999999999999999999999999999888765332221111 11122346899998
Q ss_pred cccHHH--HHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC--EEEee-------------
Q 005611 178 AGIDEA--VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--FYQMA------------- 240 (688)
Q Consensus 178 ~G~~~~--k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~--~~~v~------------- 240 (688)
+.|+.. +..|+++ ++.+++++.+.|+||+|+||||+++.+++..... -+.++
T Consensus 486 f~Y~~~~~~~vL~~i-----------sl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr 554 (711)
T TIGR00958 486 FSYPNRPDVPVLKGL-----------TFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLH 554 (711)
T ss_pred EECCCCCCCccccCc-----------eEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHH
Confidence 666421 1223322 6678889999999999999999999999843100 00000
Q ss_pred ---------------------------C--------------chhH-------HHHhhh------hhHHHHHHHHHHHhC
Q 005611 241 ---------------------------G--------------SEFV-------EVLVGV------GSARIRDLFKRAKVN 266 (688)
Q Consensus 241 ---------------------------~--------------~~~~-------~~~~g~------~~~~~r~~f~~A~~~ 266 (688)
. .++. ++.+|+ +++++|..++||..+
T Consensus 555 ~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~ 634 (711)
T TIGR00958 555 RQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVR 634 (711)
T ss_pred hhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhc
Confidence 0 0011 111222 688999999999999
Q ss_pred CCeEEEEcccchhhhh
Q 005611 267 KPSVIFIDEIDALATR 282 (688)
Q Consensus 267 ~p~IL~LDEiD~l~~~ 282 (688)
+|+|+++||.++-.+.
T Consensus 635 ~p~ILILDEpTSaLD~ 650 (711)
T TIGR00958 635 KPRVLILDEATSALDA 650 (711)
T ss_pred CCCEEEEEccccccCH
Confidence 9999999999986544
No 106
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.53 E-value=2.2e-13 Score=151.37 Aligned_cols=225 Identities=19% Similarity=0.242 Sum_probs=144.8
Q ss_pred CCCcccccc-cccHHH--HHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCc
Q 005611 169 STGVKFSDV-AGIDEA--VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 242 (688)
Q Consensus 169 ~~~v~f~dV-~G~~~~--k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~ 242 (688)
.+..+|++. .|-... ...++++.. .+. .......++++||||+|+|||+|++++++++ +..++++++.
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~---~~~---~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTK---VSE---QGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHh---ccc---cccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 466789996 354322 233333322 111 0001123579999999999999999999875 6888999988
Q ss_pred hhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcE
Q 005611 243 EFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGV 322 (688)
Q Consensus 243 ~~~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~v 322 (688)
++...+...........|... ...+++|+|||++.+.++.. ..++...++|.+.. ....
T Consensus 179 ~f~~~~~~~l~~~~~~~f~~~-~~~~dvLiIDDiq~l~~k~~-------------~qeelf~l~N~l~~-------~~k~ 237 (445)
T PRK12422 179 LFTEHLVSAIRSGEMQRFRQF-YRNVDALFIEDIEVFSGKGA-------------TQEEFFHTFNSLHT-------EGKL 237 (445)
T ss_pred HHHHHHHHHHhcchHHHHHHH-cccCCEEEEcchhhhcCChh-------------hHHHHHHHHHHHHH-------CCCc
Confidence 776654433221112234332 34677999999998764321 22233334444332 2234
Q ss_pred EEEEecCCCC---cCCccccCCCccc--eeeeccCCChhhHHHHHHHHhccCcCCCccC-HHHHHhhCCCCCHHHHHHHH
Q 005611 323 IFLAATNRRD---LLDPALLRPGRFD--RKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKNLPGWTGARLAQLV 396 (688)
Q Consensus 323 iVIaaTN~~~---~Ld~aL~r~gRf~--~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~d-l~~la~~t~G~s~~dL~~lv 396 (688)
+|+++++.|. .+++++++ ||. ..+.+++|+.++|..|++..+...++.-+.+ +..++....+ +.++|.+.+
T Consensus 238 IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l 314 (445)
T PRK12422 238 IVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHAL 314 (445)
T ss_pred EEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHH
Confidence 5555555454 46788888 885 7999999999999999999987765443333 5557777766 789999888
Q ss_pred HHHHH---HHHHhCCccccHHHHHHHHHhhc
Q 005611 397 QEAAL---VAVRKGHESILSSDMDDAVDRLT 424 (688)
Q Consensus 397 ~~A~~---~A~~~~~~~I~~~di~~Al~~~~ 424 (688)
+..+. .+.. ....|+.+++++++....
T Consensus 315 ~~l~~~~a~~~~-~~~~i~~~~~~~~l~~~~ 344 (445)
T PRK12422 315 TLLAKRVAYKKL-SHQLLYVDDIKALLHDVL 344 (445)
T ss_pred HHHHHHHHHHHh-hCCCCCHHHHHHHHHHhh
Confidence 88753 2222 235799999999998764
No 107
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.53 E-value=3.7e-14 Score=164.46 Aligned_cols=167 Identities=13% Similarity=0.092 Sum_probs=110.3
Q ss_pred ccccChhhH---------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc-cccccc-cCCCCccc
Q 005611 106 YEFYTFGGL---------SASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRS-KAEARV-DGSTGVKF 174 (688)
Q Consensus 106 ~~~~~~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-~~~~~~-~~~~~v~f 174 (688)
.|.+|.|++ .+++.+...+..|+..+..++..+++...+..|+.++++..+.... ...... .....+.|
T Consensus 273 ~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~ 352 (588)
T PRK11174 273 LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQQGEKELASNDPVTIEA 352 (588)
T ss_pred hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccccCCCCCceEEE
Confidence 366777754 2233566778899999999999999999999999888765332111 111111 12346899
Q ss_pred ccc-cccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-EEEeeC-----------
Q 005611 175 SDV-AGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-FYQMAG----------- 241 (688)
Q Consensus 175 ~dV-~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~-~~~v~~----------- 241 (688)
+|| +.+.+.+..|+++ ++.+++++.+.|+||+|+|||||++.+++..... -+.+++
T Consensus 353 ~~vsf~~~~~~~vL~~i-----------~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~l 421 (588)
T PRK11174 353 EDLEILSPDGKTLAGPL-----------NFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESW 421 (588)
T ss_pred EeeEEeccCCCeeeeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHH
Confidence 999 4442212223222 5667888999999999999999999999843000 000100
Q ss_pred --------------------------------------------------chhHHHHhhh------hhHHHHHHHHHHHh
Q 005611 242 --------------------------------------------------SEFVEVLVGV------GSARIRDLFKRAKV 265 (688)
Q Consensus 242 --------------------------------------------------~~~~~~~~g~------~~~~~r~~f~~A~~ 265 (688)
++.+++.+|+ |++++|..++||..
T Consensus 422 r~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll 501 (588)
T PRK11174 422 RKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALL 501 (588)
T ss_pred HhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHh
Confidence 0001112222 78999999999999
Q ss_pred CCCeEEEEcccchhhhhh
Q 005611 266 NKPSVIFIDEIDALATRR 283 (688)
Q Consensus 266 ~~p~IL~LDEiD~l~~~~ 283 (688)
++|+|+++||+.+..+..
T Consensus 502 ~~~~IliLDE~TSaLD~~ 519 (588)
T PRK11174 502 QPCQLLLLDEPTASLDAH 519 (588)
T ss_pred cCCCEEEEeCCccCCCHH
Confidence 999999999999866543
No 108
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=2.9e-13 Score=153.60 Aligned_cols=209 Identities=19% Similarity=0.254 Sum_probs=146.8
Q ss_pred CCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEE--eeCch---h
Q 005611 170 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ--MAGSE---F 244 (688)
Q Consensus 170 ~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~--v~~~~---~ 244 (688)
.+-+|+||+|++.+++.|.+.+.. -+.++.+||+||+|+|||++|+.+|+.+++..-. ..|.. .
T Consensus 11 rP~~f~divGq~~v~~~L~~~i~~-----------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 11 RPKSFSELVGQEHVVRALTNALEQ-----------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 356899999999999998887653 2445678999999999999999999988663110 00100 0
Q ss_pred HH-------------HHhhhhhHHHHHHHHHHHh----CCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHH
Q 005611 245 VE-------------VLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLN 307 (688)
Q Consensus 245 ~~-------------~~~g~~~~~~r~~f~~A~~----~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 307 (688)
.. .-...+...+|.++..+.. ....|++|||+|.+... ..|
T Consensus 80 ~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~----------------------a~n 137 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKS----------------------AFN 137 (527)
T ss_pred HHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHH----------------------HHH
Confidence 00 0001233456777766543 23469999999986422 247
Q ss_pred HHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCc-cCHHHHHhhCCC
Q 005611 308 QLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSYAKNLPG 386 (688)
Q Consensus 308 ~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~-~dl~~la~~t~G 386 (688)
.|+..++. .+.++++|.+|+.++.+.+.+++ |+ ..++|++++.++..+.++..+.+.++..+ ..+..+++.+.|
T Consensus 138 aLLK~LEe--pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G 212 (527)
T PRK14969 138 AMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG 212 (527)
T ss_pred HHHHHHhC--CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 78888874 44567777777888888888887 64 68999999999999888888765554422 235667777766
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHH
Q 005611 387 WTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 421 (688)
Q Consensus 387 ~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al~ 421 (688)
+.+++.+++..+... +...|+.+++...+.
T Consensus 213 -slr~al~lldqai~~----~~~~I~~~~v~~~~~ 242 (527)
T PRK14969 213 -SMRDALSLLDQAIAY----GGGTVNESEVRAMLG 242 (527)
T ss_pred -CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHC
Confidence 899999999887654 356788888877654
No 109
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=5.3e-13 Score=152.48 Aligned_cols=202 Identities=24% Similarity=0.318 Sum_probs=147.2
Q ss_pred CCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC--------------
Q 005611 170 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------------- 235 (688)
Q Consensus 170 ~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~-------------- 235 (688)
.+.+|++|+|++.+++.|++.+.. .+.++.+||+||+|||||++|+.+|+.++++
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C 79 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEIC 79 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHH
Confidence 467899999999999999888653 2345678999999999999999999987542
Q ss_pred ----------EEEeeCchhHHHHhhhhhHHHHHHHHHHHh----CCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHH
Q 005611 236 ----------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE 301 (688)
Q Consensus 236 ----------~~~v~~~~~~~~~~g~~~~~~r~~f~~A~~----~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~ 301 (688)
++.+++. .+.+...+|.+...+.. ....|++|||+|.+..
T Consensus 80 ~~i~~g~~~dv~eidaa------s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~-------------------- 133 (559)
T PRK05563 80 KAITNGSLMDVIEIDAA------SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST-------------------- 133 (559)
T ss_pred HHHhcCCCCCeEEeecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH--------------------
Confidence 2222221 11234556777766543 2356999999998642
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCc-cCHHHH
Q 005611 302 RETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSY 380 (688)
Q Consensus 302 ~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~-~dl~~l 380 (688)
...+.|+..++. .+.++++|.+|+.++.+++.+++ |+. .++|++|+.++..+.++..+.+.++.-+ ..+..+
T Consensus 134 --~a~naLLKtLEe--pp~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~i 206 (559)
T PRK05563 134 --GAFNALLKTLEE--PPAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLI 206 (559)
T ss_pred --HHHHHHHHHhcC--CCCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 234778887774 34566777777788999999988 764 6889999999999999988876655433 336677
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 005611 381 AKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 420 (688)
Q Consensus 381 a~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al 420 (688)
+....| +.+++.+++..+...+ ...|+.+++...+
T Consensus 207 a~~s~G-~~R~al~~Ldq~~~~~----~~~It~~~V~~vl 241 (559)
T PRK05563 207 ARAAEG-GMRDALSILDQAISFG----DGKVTYEDALEVT 241 (559)
T ss_pred HHHcCC-CHHHHHHHHHHHHHhc----cCCCCHHHHHHHh
Confidence 777776 8999999988876553 3568888776654
No 110
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=3.7e-13 Score=151.80 Aligned_cols=203 Identities=20% Similarity=0.316 Sum_probs=143.5
Q ss_pred CCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC--------------
Q 005611 170 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------------- 235 (688)
Q Consensus 170 ~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~-------------- 235 (688)
.+.+|++|+|++.+++.|...+.. -+.+..+||+||+|+|||++|+.+|+.+.+.
T Consensus 11 RP~~f~diiGq~~~v~~L~~~i~~-----------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC 79 (546)
T PRK14957 11 RPQSFAEVAGQQHALNSLVHALET-----------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENC 79 (546)
T ss_pred CcCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 457899999999999988877542 1345678999999999999999999987641
Q ss_pred ----------EEEeeCchhHHHHhhhhhHHHHHHHHHHHh----CCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHH
Q 005611 236 ----------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE 301 (688)
Q Consensus 236 ----------~~~v~~~~~~~~~~g~~~~~~r~~f~~A~~----~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~ 301 (688)
++.++... ..+...++.++..+.. ....|++|||+|.+...
T Consensus 80 ~~i~~~~~~dlieidaas------~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~------------------- 134 (546)
T PRK14957 80 VAINNNSFIDLIEIDAAS------RTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQ------------------- 134 (546)
T ss_pred HHHhcCCCCceEEeeccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHH-------------------
Confidence 22222111 0122344555554432 34569999999986432
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCC-ccCHHHH
Q 005611 302 RETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLSSY 380 (688)
Q Consensus 302 ~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~-~~dl~~l 380 (688)
..+.|+..++. .+..+++|.+|+.+..+.+.+++ |+ ..+++.+++.++..+.++..+.+.+... +..+..+
T Consensus 135 ---a~naLLK~LEe--pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~I 206 (546)
T PRK14957 135 ---SFNALLKTLEE--PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYI 206 (546)
T ss_pred ---HHHHHHHHHhc--CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 33677777773 34566667677778888888887 65 6899999999999988888877655442 2236677
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHH
Q 005611 381 AKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 421 (688)
Q Consensus 381 a~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al~ 421 (688)
+..+.| +.+++.+++..+.... + ..|+.+++++++.
T Consensus 207 a~~s~G-dlR~alnlLek~i~~~---~-~~It~~~V~~~l~ 242 (546)
T PRK14957 207 AYHAKG-SLRDALSLLDQAISFC---G-GELKQAQIKQMLG 242 (546)
T ss_pred HHHcCC-CHHHHHHHHHHHHHhc---c-CCCCHHHHHHHHc
Confidence 777766 8999999998877543 2 5688888887654
No 111
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.51 E-value=1.5e-13 Score=164.09 Aligned_cols=166 Identities=21% Similarity=0.308 Sum_probs=123.6
Q ss_pred CcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEee
Q 005611 171 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMA 240 (688)
Q Consensus 171 ~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~----------~~~~~~v~ 240 (688)
+-++++|+|.+.....+.+++. . +...+++|+||||||||++++.+|..+ +.+++.++
T Consensus 174 ~~~l~~vigr~~ei~~~i~iL~---r---------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 174 QGKLDPVIGRDEEIRRTIQVLQ---R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred cCCCCcCCCCHHHHHHHHHHHh---c---------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 3468899999986555544432 2 223468999999999999999999987 67888888
Q ss_pred CchhH--HHHhhhhhHHHHHHHHHHH-hCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCC
Q 005611 241 GSEFV--EVLVGVGSARIRDLFKRAK-VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD 317 (688)
Q Consensus 241 ~~~~~--~~~~g~~~~~~r~~f~~A~-~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~ 317 (688)
...+. ..+.|+.+++++..|..+. ...++||||||+|.+.+.+... ++ .... +.|... -
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~-~~----------~d~~---~~lkp~----l 303 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD-GA----------MDAG---NMLKPA----L 303 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc-cc----------hhHH---HHhcch----h
Confidence 88766 3477888889999998754 3568999999999998664321 11 0011 222222 2
Q ss_pred CCCcEEEEEecCCCC-----cCCccccCCCccceeeeccCCChhhHHHHHHHHhccC
Q 005611 318 TGKGVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKV 369 (688)
Q Consensus 318 ~~~~viVIaaTN~~~-----~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~ 369 (688)
.+..+.+|++|+..+ .+|+++.| ||+ .|.++.|+.+++..|++......
T Consensus 304 ~~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~ 357 (857)
T PRK10865 304 ARGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERY 357 (857)
T ss_pred hcCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhh
Confidence 356899999999876 48999999 998 58899999999999998776554
No 112
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=3.6e-13 Score=152.78 Aligned_cols=204 Identities=18% Similarity=0.242 Sum_probs=142.8
Q ss_pred CCCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-------------
Q 005611 169 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP------------- 235 (688)
Q Consensus 169 ~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~------------- 235 (688)
....+|+||+|++.+++.|++.+.. -+.+..+||+||+|+|||++|+.+|+.+.+.
T Consensus 10 yRP~sf~dIiGQe~v~~~L~~ai~~-----------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~s 78 (624)
T PRK14959 10 YRPQTFAEVAGQETVKAILSRAAQE-----------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQ 78 (624)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHH
Confidence 3467899999999999999887642 1335679999999999999999999988753
Q ss_pred -----------EEEeeCchhHHHHhhhhhHHHHHHHHHH----HhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhH
Q 005611 236 -----------FYQMAGSEFVEVLVGVGSARIRDLFKRA----KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQ 300 (688)
Q Consensus 236 -----------~~~v~~~~~~~~~~g~~~~~~r~~f~~A----~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~ 300 (688)
++.++... ..+...+|.+.+.+ ......||||||+|.+...
T Consensus 79 C~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~------------------ 134 (624)
T PRK14959 79 CRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTRE------------------ 134 (624)
T ss_pred HHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHH------------------
Confidence 22232211 01122334333222 2234579999999987422
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCC-CccCHHH
Q 005611 301 ERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSS 379 (688)
Q Consensus 301 ~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~-~~~dl~~ 379 (688)
..+.|+..++. ....+++|.+||.++.+.+.+++ |+ .+++|++++.++..++++..+.+.+.. ++..+..
T Consensus 135 ----a~naLLk~LEE--P~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~l 205 (624)
T PRK14959 135 ----AFNALLKTLEE--PPARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRL 205 (624)
T ss_pred ----HHHHHHHHhhc--cCCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 23677777764 33567777888888888888887 76 478999999999999998887765543 2233667
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHH
Q 005611 380 YAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 421 (688)
Q Consensus 380 la~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al~ 421 (688)
+++.+.| +.+++.+++.++. ..+.+.|+.+++..++.
T Consensus 206 IA~~s~G-dlR~Al~lLeqll----~~g~~~It~d~V~~~lg 242 (624)
T PRK14959 206 IARRAAG-SVRDSMSLLGQVL----ALGESRLTIDGARGVLG 242 (624)
T ss_pred HHHHcCC-CHHHHHHHHHHHH----HhcCCCcCHHHHHHHhC
Confidence 7777766 7788888877653 23455799998887763
No 113
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.51 E-value=1.9e-13 Score=149.36 Aligned_cols=184 Identities=22% Similarity=0.345 Sum_probs=124.8
Q ss_pred ccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCE----------------
Q 005611 173 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPF---------------- 236 (688)
Q Consensus 173 ~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~---------------- 236 (688)
.|++|+|++.+++.|++.+..-+. .+..++.+.++.+||+||||+|||++|+++|+.+.++.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~--~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA--DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc--cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 589999999999999998875222 12234556788999999999999999999999775531
Q ss_pred -------EEeeCchhHHHHhhhhhHHHHHHHHHHHhC----CCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHH
Q 005611 237 -------YQMAGSEFVEVLVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETT 305 (688)
Q Consensus 237 -------~~v~~~~~~~~~~g~~~~~~r~~f~~A~~~----~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (688)
..+.. +. ...+...+|.+++.+... ...|+||||+|.+... .
T Consensus 81 ~~~hpD~~~i~~-~~----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~----------------------a 133 (394)
T PRK07940 81 AGTHPDVRVVAP-EG----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER----------------------A 133 (394)
T ss_pred cCCCCCEEEecc-cc----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH----------------------H
Confidence 11111 10 112334577877776542 3469999999997532 2
Q ss_pred HHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccCHHHHHhhCC
Q 005611 306 LNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLP 385 (688)
Q Consensus 306 l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~ 385 (688)
.|.|+..|+.. +.++++|.+|+.++.++|.+++ |+ ..++|++|+.++..+.+.... +.. ......++..+.
T Consensus 134 anaLLk~LEep--~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~ 204 (394)
T PRK07940 134 ANALLKAVEEP--PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQ 204 (394)
T ss_pred HHHHHHHhhcC--CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcC
Confidence 26777777742 3344444455558999999998 76 699999999998887776322 222 223556777888
Q ss_pred CCCHHHHHH
Q 005611 386 GWTGARLAQ 394 (688)
Q Consensus 386 G~s~~dL~~ 394 (688)
|..+..+.-
T Consensus 205 G~~~~A~~l 213 (394)
T PRK07940 205 GHIGRARRL 213 (394)
T ss_pred CCHHHHHHH
Confidence 855444433
No 114
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.50 E-value=4.2e-13 Score=145.78 Aligned_cols=205 Identities=22% Similarity=0.329 Sum_probs=145.2
Q ss_pred CCCCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC------------
Q 005611 168 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP------------ 235 (688)
Q Consensus 168 ~~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~------------ 235 (688)
...+.+|++++|+++.++.|.+.+.. .+.++.+||+||||+|||++++++++.+.++
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~ 75 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECE 75 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 33567899999999999999887542 1345679999999999999999999987543
Q ss_pred ------------EEEeeCchhHHHHhhhhhHHHHHHHHHHHhC----CCeEEEEcccchhhhhhcCCccCcchhhhhhhh
Q 005611 236 ------------FYQMAGSEFVEVLVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAAT 299 (688)
Q Consensus 236 ------------~~~v~~~~~~~~~~g~~~~~~r~~f~~A~~~----~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~ 299 (688)
++.++... ..+...++.++..+... ...|++|||+|.+...
T Consensus 76 ~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~----------------- 132 (355)
T TIGR02397 76 SCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKS----------------- 132 (355)
T ss_pred HHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHH-----------------
Confidence 22222211 11223456666655422 3459999999886421
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCc-cCHH
Q 005611 300 QERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLS 378 (688)
Q Consensus 300 ~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~-~dl~ 378 (688)
..+.++..++. .+.++++|.+||.++.+.+++++ |+ ..+++++|+.++..++++.++.+.+..-+ ..+.
T Consensus 133 -----~~~~Ll~~le~--~~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~ 202 (355)
T TIGR02397 133 -----AFNALLKTLEE--PPEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALE 202 (355)
T ss_pred -----HHHHHHHHHhC--CccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 23667777764 34567777778888888888888 76 47899999999999999998876654322 2356
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHH
Q 005611 379 SYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 421 (688)
Q Consensus 379 ~la~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al~ 421 (688)
.++..+.| +.+.+.+.++.+...+ ...|+.+++++++.
T Consensus 203 ~l~~~~~g-~~~~a~~~lekl~~~~----~~~it~~~v~~~~~ 240 (355)
T TIGR02397 203 LIARAADG-SLRDALSLLDQLISFG----NGNITYEDVNELLG 240 (355)
T ss_pred HHHHHcCC-ChHHHHHHHHHHHhhc----CCCCCHHHHHHHhC
Confidence 67777765 7888888887776553 24599999988764
No 115
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.50 E-value=1.4e-13 Score=159.25 Aligned_cols=122 Identities=16% Similarity=0.144 Sum_probs=88.1
Q ss_pred CcccceeccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc-cc-cccccCCCCccccc
Q 005611 99 GGILSKFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRS-KA-EARVDGSTGVKFSD 176 (688)
Q Consensus 99 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-~~-~~~~~~~~~v~f~d 176 (688)
-|++.+.+|.+|.|++++++.|...+..|+..+...+..++....+..|+.++++....... .. .........+.|++
T Consensus 260 ~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 339 (585)
T TIGR01192 260 IGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRH 339 (585)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCCCCCCCCeEEEEE
Confidence 34567789999999999999999999999999999988888888888887776654221111 10 01111234588888
Q ss_pred c-cccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 177 V-AGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 177 V-~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
+ +.+++.+..++++ ++.++++..+.|+||+|+|||||++.+++.
T Consensus 340 v~~~y~~~~~~l~~i-----------~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~ 384 (585)
T TIGR01192 340 ITFEFANSSQGVFDV-----------SFEAKAGQTVAIVGPTGAGKTTLINLLQRV 384 (585)
T ss_pred EEEECCCCCccccce-----------eEEEcCCCEEEEECCCCCCHHHHHHHHccC
Confidence 8 5554221122222 566788889999999999999999999983
No 116
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.50 E-value=3.8e-13 Score=156.78 Aligned_cols=209 Identities=21% Similarity=0.290 Sum_probs=139.1
Q ss_pred CCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHHHHh
Q 005611 170 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLV 249 (688)
Q Consensus 170 ~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~~~~ 249 (688)
.+-+|+|++|++........+...+.. ....+++|+||||||||++|+++++..+.+++.+++...
T Consensus 23 RP~tldd~vGQe~ii~~~~~L~~~i~~---------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~----- 88 (725)
T PRK13341 23 RPRTLEEFVGQDHILGEGRLLRRAIKA---------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA----- 88 (725)
T ss_pred CCCcHHHhcCcHHHhhhhHHHHHHHhc---------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-----
Confidence 457899999999887542222222221 122478999999999999999999999999988876531
Q ss_pred hhhhHHHHHHHHHHH-----hCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEE
Q 005611 250 GVGSARIRDLFKRAK-----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF 324 (688)
Q Consensus 250 g~~~~~~r~~f~~A~-----~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viV 324 (688)
+...++..+..+. .....+|||||+|.+.... .+.|+..++ +..+++
T Consensus 89 --~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~q----------------------QdaLL~~lE----~g~IiL 140 (725)
T PRK13341 89 --GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQ----------------------QDALLPWVE----NGTITL 140 (725)
T ss_pred --hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHH----------------------HHHHHHHhc----CceEEE
Confidence 1122333333331 2345699999999875321 134444443 345677
Q ss_pred EEecCC-C-CcCCccccCCCccceeeeccCCChhhHHHHHHHHhcc-------CcCC-CccCHHHHHhhCCCCCHHHHHH
Q 005611 325 LAATNR-R-DLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASK-------VKMS-DSVDLSSYAKNLPGWTGARLAQ 394 (688)
Q Consensus 325 IaaTN~-~-~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~-------~~~~-~~~dl~~la~~t~G~s~~dL~~ 394 (688)
|++|+. + ..+++++++ |. ..+++++++.+++..+++..+.. ..+. ++..+..+++..+| +.+++.+
T Consensus 141 I~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln 216 (725)
T PRK13341 141 IGATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLN 216 (725)
T ss_pred EEecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHH
Confidence 766543 2 468899998 63 57999999999999999988862 1121 12236778887766 8899999
Q ss_pred HHHHHHHHHHHhCC--ccccHHHHHHHHHhhc
Q 005611 395 LVQEAALVAVRKGH--ESILSSDMDDAVDRLT 424 (688)
Q Consensus 395 lv~~A~~~A~~~~~--~~I~~~di~~Al~~~~ 424 (688)
+++.+...+...+. ..|+.+++++++.+..
T Consensus 217 ~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~~ 248 (725)
T PRK13341 217 ALELAVESTPPDEDGLIDITLAIAEESIQQRA 248 (725)
T ss_pred HHHHHHHhcccCCCCceeccHHHHHHHHHHhh
Confidence 99987754422222 2378888888887643
No 117
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.50 E-value=2.6e-13 Score=159.93 Aligned_cols=163 Identities=26% Similarity=0.402 Sum_probs=120.4
Q ss_pred cccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHH---------
Q 005611 176 DVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE--------- 246 (688)
Q Consensus 176 dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~--------- 246 (688)
+.+|++++|+++.+++...... +-..+..++|+||||+|||++++.+|+.++.+++.++.+...+
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchh
Confidence 4799999999998887753321 1123457999999999999999999999999999887654322
Q ss_pred HHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcC-----C-----
Q 005611 247 VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDG-----F----- 316 (688)
Q Consensus 247 ~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~-----~----- 316 (688)
.+.|....++...+.++...+| |++|||+|.+....++ + ....|+..+|. +
T Consensus 397 ~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g---~---------------~~~aLlevld~~~~~~~~d~~~ 457 (784)
T PRK10787 397 TYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRG---D---------------PASALLEVLDPEQNVAFSDHYL 457 (784)
T ss_pred ccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCC---C---------------HHHHHHHHhccccEEEEecccc
Confidence 3455555566666766665566 8999999998754321 0 12345554542 0
Q ss_pred ---CCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhc
Q 005611 317 ---DTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHAS 367 (688)
Q Consensus 317 ---~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~ 367 (688)
..-+++++|||+|.. .++++|++ |+. .|.++.++.++..+|.+.++.
T Consensus 458 ~~~~dls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 458 EVDYDLSDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred cccccCCceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence 122678999999987 59999999 995 899999999999999998884
No 118
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=4e-13 Score=152.81 Aligned_cols=203 Identities=18% Similarity=0.239 Sum_probs=144.2
Q ss_pred CCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC--------------
Q 005611 170 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------------- 235 (688)
Q Consensus 170 ~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~-------------- 235 (688)
..-+|+||+|++.+++.|++.+.. -+.++.+||+||+|||||++|+++|+.+++.
T Consensus 8 RP~~f~eivGq~~i~~~L~~~i~~-----------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 76 (584)
T PRK14952 8 RPATFAEVVGQEHVTEPLSSALDA-----------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC 76 (584)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHH
Confidence 456899999999999999887642 2455678999999999999999999987652
Q ss_pred ------------EEEeeCchhHHHHhhhhhHHHHHHHHHHHh----CCCeEEEEcccchhhhhhcCCccCcchhhhhhhh
Q 005611 236 ------------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAAT 299 (688)
Q Consensus 236 ------------~~~v~~~~~~~~~~g~~~~~~r~~f~~A~~----~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~ 299 (688)
++.++++. ..+-..+|.+...+.. ....|++|||+|.+...
T Consensus 77 ~~i~~~~~~~~dvieidaas------~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~----------------- 133 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAAS------HGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTA----------------- 133 (584)
T ss_pred HHhhcccCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHH-----------------
Confidence 11121110 0123445555544432 34569999999986422
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCcc-CHH
Q 005611 300 QERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV-DLS 378 (688)
Q Consensus 300 ~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~-dl~ 378 (688)
..|.|+..|+. .+.++++|.+|+.++.+.+.+++ | ..+++|.+++.++..+.++..+.+.+..-+. .+.
T Consensus 134 -----A~NALLK~LEE--pp~~~~fIL~tte~~kll~TI~S--R-c~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~ 203 (584)
T PRK14952 134 -----GFNALLKIVEE--PPEHLIFIFATTEPEKVLPTIRS--R-THHYPFRLLPPRTMRALIARICEQEGVVVDDAVYP 203 (584)
T ss_pred -----HHHHHHHHHhc--CCCCeEEEEEeCChHhhHHHHHH--h-ceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 34778888873 45677777788888999999998 7 4689999999999999998888766543322 345
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 005611 379 SYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 420 (688)
Q Consensus 379 ~la~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al 420 (688)
.+++...| +.+++.+++......+ +...|+.+++...+
T Consensus 204 ~Ia~~s~G-dlR~aln~Ldql~~~~---~~~~It~~~v~~ll 241 (584)
T PRK14952 204 LVIRAGGG-SPRDTLSVLDQLLAGA---ADTHVTYQRALGLL 241 (584)
T ss_pred HHHHHcCC-CHHHHHHHHHHHHhcc---CCCCcCHHHHHHHH
Confidence 56665555 8999999999876543 24567877776654
No 119
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=4e-13 Score=158.35 Aligned_cols=209 Identities=20% Similarity=0.194 Sum_probs=142.8
Q ss_pred CCCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEE-----EeeCch
Q 005611 169 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFY-----QMAGSE 243 (688)
Q Consensus 169 ~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~-----~v~~~~ 243 (688)
....+|++|+|++.+++.|++.+.. -+.++.+||+||+|||||++|+.+|+.++|.-- .-.|..
T Consensus 9 yRP~~f~eiiGqe~v~~~L~~~i~~-----------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~s 77 (824)
T PRK07764 9 YRPATFAEVIGQEHVTEPLSTALDS-----------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDS 77 (824)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHH
Confidence 3467899999999999999887652 244567899999999999999999999875210 000111
Q ss_pred hHHHHhh---------------hhhHHHHHHHHHHH----hCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHH
Q 005611 244 FVEVLVG---------------VGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERET 304 (688)
Q Consensus 244 ~~~~~~g---------------~~~~~~r~~f~~A~----~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (688)
......| .+...+|.+..++. .....|+||||+|.+.. .
T Consensus 78 C~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~----------------------~ 135 (824)
T PRK07764 78 CVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP----------------------Q 135 (824)
T ss_pred HHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH----------------------H
Confidence 1110000 12234555444432 24567999999999753 2
Q ss_pred HHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCcc-CHHHHHhh
Q 005611 305 TLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV-DLSSYAKN 383 (688)
Q Consensus 305 ~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~-dl~~la~~ 383 (688)
..|.||+.|+. ...++++|.+|+.++.|.+.|++ |+ .+++|..++.++..++|+..+++.++..+. .+..+++.
T Consensus 136 a~NaLLK~LEE--pP~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~ 210 (824)
T PRK07764 136 GFNALLKIVEE--PPEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRA 210 (824)
T ss_pred HHHHHHHHHhC--CCCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34778888774 34567777778888888889988 64 588999999999999999888766554332 35566777
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHH
Q 005611 384 LPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDA 419 (688)
Q Consensus 384 t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~A 419 (688)
..| +.+++.+++++.+..+ +...|+.+++...
T Consensus 211 sgG-dlR~Al~eLEKLia~~---~~~~IT~e~V~al 242 (824)
T PRK07764 211 GGG-SVRDSLSVLDQLLAGA---GPEGVTYERAVAL 242 (824)
T ss_pred cCC-CHHHHHHHHHHHHhhc---CCCCCCHHHHHHH
Confidence 666 8888888888766332 3455777766544
No 120
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.50 E-value=3.7e-13 Score=161.36 Aligned_cols=201 Identities=19% Similarity=0.265 Sum_probs=142.4
Q ss_pred cccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEeeC
Q 005611 172 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMAG 241 (688)
Q Consensus 172 v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~----------~~~~~~v~~ 241 (688)
-+++.++|.++....+.+++. . +...+++|+||||||||++++.+|... +.+++.++.
T Consensus 170 ~~~~~~igr~~ei~~~~~~l~---r---------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~ 237 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVLS---R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM 237 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHHh---c---------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH
Confidence 367889999987555555432 1 233468999999999999999999875 667888887
Q ss_pred chhH--HHHhhhhhHHHHHHHHHHHh-CCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCC
Q 005611 242 SEFV--EVLVGVGSARIRDLFKRAKV-NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT 318 (688)
Q Consensus 242 ~~~~--~~~~g~~~~~~r~~f~~A~~-~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~ 318 (688)
..+. ..+.|+.+.+++..|..+.. ..|+||||||+|.+.+.+... + . ....+.|... ..
T Consensus 238 ~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~--~---------~---~d~~~~Lk~~----l~ 299 (852)
T TIGR03346 238 GALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE--G---------A---MDAGNMLKPA----LA 299 (852)
T ss_pred HHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc--c---------h---hHHHHHhchh----hh
Confidence 7765 45778888899999998865 358999999999998643221 0 0 0111222222 23
Q ss_pred CCcEEEEEecCCCC-----cCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCcc-----CHHHHHhhCCCC-
Q 005611 319 GKGVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV-----DLSSYAKNLPGW- 387 (688)
Q Consensus 319 ~~~viVIaaTN~~~-----~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~-----dl~~la~~t~G~- 387 (688)
+..+.+|++|+..+ .+|+++.| ||. .|.++.|+.+++..|++.+.........+ .+...+..+.+|
T Consensus 300 ~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi 376 (852)
T TIGR03346 300 RGELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYI 376 (852)
T ss_pred cCceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccc
Confidence 56789999999764 47999999 997 58899999999999999887665443332 244445554443
Q ss_pred ----CHHHHHHHHHHHHHHHHH
Q 005611 388 ----TGARLAQLVQEAALVAVR 405 (688)
Q Consensus 388 ----s~~dL~~lv~~A~~~A~~ 405 (688)
-|.-.-.++.+|+..+..
T Consensus 377 ~~r~lPdkAidlld~a~a~~~~ 398 (852)
T TIGR03346 377 TDRFLPDKAIDLIDEAAARIRM 398 (852)
T ss_pred cccCCchHHHHHHHHHHHHHHh
Confidence 356677788888876643
No 121
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.50 E-value=1.3e-13 Score=159.76 Aligned_cols=121 Identities=18% Similarity=0.193 Sum_probs=87.6
Q ss_pred CcccceeccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc--cccccccCCCCccccc
Q 005611 99 GGILSKFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRS--KAEARVDGSTGVKFSD 176 (688)
Q Consensus 99 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~v~f~d 176 (688)
-|++.+.+|.+|.|++++++.+...+..|+..+...+..+.....+..++.++++....... ...........++|++
T Consensus 260 ~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~ 339 (588)
T PRK13657 260 LGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDD 339 (588)
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCcCCCCCeEEEEE
Confidence 34577889999999999999999999999999999888888777777777666554221111 1001111224688999
Q ss_pred c-cccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHH
Q 005611 177 V-AGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 230 (688)
Q Consensus 177 V-~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~ 230 (688)
| ++++..+..|+++ ++.++++..++|+||+|+|||||++.+++
T Consensus 340 vsf~y~~~~~iL~~i-----------nl~i~~G~~v~IvG~sGsGKSTLl~lL~g 383 (588)
T PRK13657 340 VSFSYDNSRQGVEDV-----------SFEAKPGQTVAIVGPTGAGKSTLINLLQR 383 (588)
T ss_pred EEEEeCCCCceecce-----------eEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 8 6664322223333 56678889999999999999999999998
No 122
>PRK08727 hypothetical protein; Validated
Probab=99.50 E-value=1.2e-12 Score=133.78 Aligned_cols=209 Identities=19% Similarity=0.242 Sum_probs=132.6
Q ss_pred CCCCccccccccc-HHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCch
Q 005611 168 GSTGVKFSDVAGI-DEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSE 243 (688)
Q Consensus 168 ~~~~v~f~dV~G~-~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~ 243 (688)
..+..+|++.++- ......++... . + .....++|+||+|||||+|+++++.++ +....+++..+
T Consensus 12 ~~~~~~f~~f~~~~~n~~~~~~~~~---~--------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~ 79 (233)
T PRK08727 12 YPSDQRFDSYIAAPDGLLAQLQALA---A--------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA 79 (233)
T ss_pred CCCcCChhhccCCcHHHHHHHHHHH---h--------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH
Confidence 3456789997544 33333333221 1 1 123459999999999999999997764 55666776555
Q ss_pred hHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEE
Q 005611 244 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 323 (688)
Q Consensus 244 ~~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~vi 323 (688)
+.. .....+... .+..+|+|||++.+..... ....+..++.... .++.-+
T Consensus 80 ~~~--------~~~~~~~~l--~~~dlLiIDDi~~l~~~~~-----------------~~~~lf~l~n~~~---~~~~~v 129 (233)
T PRK08727 80 AAG--------RLRDALEAL--EGRSLVALDGLESIAGQRE-----------------DEVALFDFHNRAR---AAGITL 129 (233)
T ss_pred hhh--------hHHHHHHHH--hcCCEEEEeCcccccCChH-----------------HHHHHHHHHHHHH---HcCCeE
Confidence 332 222333332 3556999999998753321 1222233333331 222234
Q ss_pred EEEecCCCCcC---CccccCCCcc--ceeeeccCCChhhHHHHHHHHhccCcCCC-ccCHHHHHhhCCCCCHHHHHHHHH
Q 005611 324 FLAATNRRDLL---DPALLRPGRF--DRKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLSSYAKNLPGWTGARLAQLVQ 397 (688)
Q Consensus 324 VIaaTN~~~~L---d~aL~r~gRf--~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~-~~dl~~la~~t~G~s~~dL~~lv~ 397 (688)
|+++.+.|..+ ++++++ || ..++++++|+.++|.+|++.++....+.- +..+..+++++.| +.+.+.++++
T Consensus 130 I~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~ 206 (233)
T PRK08727 130 LYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLD 206 (233)
T ss_pred EEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 44444456654 688988 76 56889999999999999998776544432 2237788888776 7777777788
Q ss_pred HHHHHHHHhCCccccHHHHHHHHHh
Q 005611 398 EAALVAVRKGHESILSSDMDDAVDR 422 (688)
Q Consensus 398 ~A~~~A~~~~~~~I~~~di~~Al~~ 422 (688)
.....+...+ +.||...+++.+.+
T Consensus 207 ~l~~~~~~~~-~~it~~~~~~~l~~ 230 (233)
T PRK08727 207 RLDRESLAAK-RRVTVPFLRRVLEE 230 (233)
T ss_pred HHHHHHHHhC-CCCCHHHHHHHHhh
Confidence 7665555444 47899888887753
No 123
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.50 E-value=7.1e-13 Score=147.75 Aligned_cols=190 Identities=19% Similarity=0.303 Sum_probs=131.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEeeCchhHHHHhhhhhH---HHHHHHHHHHhCCCeEEEEcccchhh
Q 005611 209 HGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAGSEFVEVLVGVGSA---RIRDLFKRAKVNKPSVIFIDEIDALA 280 (688)
Q Consensus 209 ~gvLL~GppGtGKT~La~alA~~~-----~~~~~~v~~~~~~~~~~g~~~~---~~r~~f~~A~~~~p~IL~LDEiD~l~ 280 (688)
.+++|+|++|+|||+|++++++++ +..++++++.++...+...-.. .+.. |.. +...+++|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~-~~~-~~~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQ-FKN-EICQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHH-HHH-HhccCCEEEEecccccc
Confidence 469999999999999999999854 4678899999988776544222 2222 211 23467799999999876
Q ss_pred hhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCc---CCccccCCCccc--eeeeccCCCh
Q 005611 281 TRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDL---LDPALLRPGRFD--RKIRIRAPNA 355 (688)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~---Ld~aL~r~gRf~--~~I~i~~Pd~ 355 (688)
.+.. ..++...++|.+. .....+|+++...|.. +++.+.+ ||. .++.+.+|+.
T Consensus 220 ~k~~-------------~~e~lf~l~N~~~-------~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~ 277 (450)
T PRK14087 220 YKEK-------------TNEIFFTIFNNFI-------ENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDN 277 (450)
T ss_pred CCHH-------------HHHHHHHHHHHHH-------HcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCH
Confidence 4321 1222233333322 2223345544444543 5788888 774 5888999999
Q ss_pred hhHHHHHHHHhccCcCC---CccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC-CccccHHHHHHHHHhh
Q 005611 356 KGRTEILKIHASKVKMS---DSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKG-HESILSSDMDDAVDRL 423 (688)
Q Consensus 356 ~eR~~Il~~~l~~~~~~---~~~dl~~la~~t~G~s~~dL~~lv~~A~~~A~~~~-~~~I~~~di~~Al~~~ 423 (688)
++|.+|++..+...++. ++.-+..|+....| +++.+.++|++....+.... ...|+.+.+++++...
T Consensus 278 e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 278 KTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 99999999999765431 22236778888877 99999999999987766553 2679999999999765
No 124
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.50 E-value=8.5e-13 Score=150.78 Aligned_cols=217 Identities=19% Similarity=0.272 Sum_probs=142.9
Q ss_pred cccccccHHHHHHHHHHHHH-hcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEeeCc
Q 005611 174 FSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMAGS 242 (688)
Q Consensus 174 f~dV~G~~~~k~~L~~ii~~-l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~----------~~~~~~v~~~ 242 (688)
-+.+.|.++..++|..++.. +.. ..++..++|+|+||||||++++.+.+++ .+.+++++|.
T Consensus 754 PD~LPhREeEIeeLasfL~paIkg--------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQ--------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhc--------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 35678888888888887765 321 1233345799999999999999998765 2557888884
Q ss_pred hhHHH------Hh----hh-------hhHHHHHHHHHHH--hCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHH
Q 005611 243 EFVEV------LV----GV-------GSARIRDLFKRAK--VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERE 303 (688)
Q Consensus 243 ~~~~~------~~----g~-------~~~~~r~~f~~A~--~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~ 303 (688)
.+... .. +. ....+..+|.... .....||+|||+|.|..+. +
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~-------------------Q 886 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT-------------------Q 886 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH-------------------H
Confidence 42211 11 11 1123444555432 2345799999999987532 1
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEEecCC---CCcCCccccCCCccce-eeeccCCChhhHHHHHHHHhccCc-CCCccCHH
Q 005611 304 TTLNQLLIELDGFDTGKGVIFLAATNR---RDLLDPALLRPGRFDR-KIRIRAPNAKGRTEILKIHASKVK-MSDSVDLS 378 (688)
Q Consensus 304 ~~l~~LL~~ld~~~~~~~viVIaaTN~---~~~Ld~aL~r~gRf~~-~I~i~~Pd~~eR~~Il~~~l~~~~-~~~~~dl~ 378 (688)
..+..|+.... .....++||+++|. ++.+++.+++ |+.. .+.|++|+.+++.+||+..+.... .-++..+.
T Consensus 887 DVLYnLFR~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIE 962 (1164)
T PTZ00112 887 KVLFTLFDWPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQ 962 (1164)
T ss_pred HHHHHHHHHhh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 23444444432 23467999999986 5567888887 6654 588899999999999999987532 11222244
Q ss_pred HHHh---hCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHhhcc
Q 005611 379 SYAK---NLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTV 425 (688)
Q Consensus 379 ~la~---~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al~~~~~ 425 (688)
.+|+ ...| ..|..-.+|+.|...+ +...|+.+|+.+|+.++..
T Consensus 963 LIArkVAq~SG-DARKALDILRrAgEik---egskVT~eHVrkAleeiE~ 1008 (1164)
T PTZ00112 963 LCARKVANVSG-DIRKALQICRKAFENK---RGQKIVPRDITEATNQLFD 1008 (1164)
T ss_pred HHHHhhhhcCC-HHHHHHHHHHHHHhhc---CCCccCHHHHHHHHHHHHh
Confidence 5555 3334 5666667778777652 4458999999999987744
No 125
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.48 E-value=1.7e-13 Score=159.01 Aligned_cols=166 Identities=17% Similarity=0.187 Sum_probs=116.5
Q ss_pred eccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccccCCCCcccccc-cccHHH
Q 005611 105 FYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRSKAEARVDGSTGVKFSDV-AGIDEA 183 (688)
Q Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~f~dV-~G~~~~ 183 (688)
..|.++.|.+.+++.|...+..|+..++..+..++....+..|+.++++..+....... .......++|++| +.|+..
T Consensus 275 ~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~-~~~~~~~i~~~~v~f~y~~~ 353 (592)
T PRK10790 275 ASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGNDD-RPLQSGRIDIDNVSFAYRDD 353 (592)
T ss_pred HCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCc-cCCCCCeEEEEEEEEEeCCC
Confidence 47889999999999999999999999999999999999988898887765322111111 1122346889988 555421
Q ss_pred HHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC--EEEeeC--------------------
Q 005611 184 VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--FYQMAG-------------------- 241 (688)
Q Consensus 184 k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~--~~~v~~-------------------- 241 (688)
+..++++ ++.++++..+.|+|++|+|||||++.+++...-. -+.+++
T Consensus 354 ~~il~~i-----------~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q 422 (592)
T PRK10790 354 NLVLQNI-----------NLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQ 422 (592)
T ss_pred Cceeece-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEcc
Confidence 2223222 6668888999999999999999999999843110 000100
Q ss_pred ---------------------------------chhH-------HHHhhh------hhHHHHHHHHHHHhCCCeEEEEcc
Q 005611 242 ---------------------------------SEFV-------EVLVGV------GSARIRDLFKRAKVNKPSVIFIDE 275 (688)
Q Consensus 242 ---------------------------------~~~~-------~~~~g~------~~~~~r~~f~~A~~~~p~IL~LDE 275 (688)
.++. ++.+|+ +++++|..++||..++|+|+++||
T Consensus 423 ~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDE 502 (592)
T PRK10790 423 DPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDE 502 (592)
T ss_pred CCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 0000 011111 678999999999999999999999
Q ss_pred cchhhhh
Q 005611 276 IDALATR 282 (688)
Q Consensus 276 iD~l~~~ 282 (688)
.++-.+.
T Consensus 503 pts~LD~ 509 (592)
T PRK10790 503 ATANIDS 509 (592)
T ss_pred CcccCCH
Confidence 9885543
No 126
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.48 E-value=2.5e-13 Score=170.29 Aligned_cols=123 Identities=12% Similarity=-0.006 Sum_probs=89.0
Q ss_pred cccceeccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccccc---cccccc---cccCCCCcc
Q 005611 100 GILSKFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFS---RSKAEA---RVDGSTGVK 173 (688)
Q Consensus 100 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~---~~~~~~---~~~~~~~v~ 173 (688)
|++++.+|.+|.|++++++.++.....++..+..++..++++..+..|++++++..... ...... .....+.+.
T Consensus 1088 G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~ 1167 (1466)
T PTZ00265 1088 GSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIE 1167 (1466)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEE
Confidence 47788899999999999987766555677788888888889999999988887653211 111010 112235699
Q ss_pred cccc-cccHH--HHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 005611 174 FSDV-AGIDE--AVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG 233 (688)
Q Consensus 174 f~dV-~G~~~--~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~ 233 (688)
|+|| +.|.. ....|+++ ++.+++++.+.|+||+||||||+++.|.+-..
T Consensus 1168 f~nVsF~Y~~~~~~~vL~~l-----------sl~i~~G~~vAIVG~SGsGKSTl~~LL~r~yd 1219 (1466)
T PTZ00265 1168 IMDVNFRYISRPNVPIYKDL-----------TFSCDSKKTTAIVGETGSGKSTVMSLLMRFYD 1219 (1466)
T ss_pred EEEEEEECCCCCCCccccCe-----------eEEEcCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence 9999 67742 11223333 66788999999999999999999999998665
No 127
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.47 E-value=5.8e-13 Score=142.47 Aligned_cols=161 Identities=22% Similarity=0.320 Sum_probs=111.6
Q ss_pred ccCCCCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhH
Q 005611 166 VDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 245 (688)
Q Consensus 166 ~~~~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~ 245 (688)
.+...+-+|++++|.+.+++.++.++.. .+.|+.++|+||||+|||+++++++++.+.+++.+++++.
T Consensus 12 ~~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~~- 79 (316)
T PHA02544 12 EQKYRPSTIDECILPAADKETFKSIVKK-----------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSDC- 79 (316)
T ss_pred eeccCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCcc-
Confidence 3445568999999999999998887641 1345567779999999999999999999999999988761
Q ss_pred HHHhhhhhHHHHHHHHHH-HhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEE
Q 005611 246 EVLVGVGSARIRDLFKRA-KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF 324 (688)
Q Consensus 246 ~~~~g~~~~~~r~~f~~A-~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viV 324 (688)
. .......+....... ....+++|+|||+|.+... .....+..+ ++.. ..++.+
T Consensus 80 -~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~------------------~~~~~L~~~---le~~--~~~~~~ 134 (316)
T PHA02544 80 -R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA------------------DAQRHLRSF---MEAY--SKNCSF 134 (316)
T ss_pred -c-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH------------------HHHHHHHHH---HHhc--CCCceE
Confidence 1 111111122211111 1135789999999986321 112223333 3322 345677
Q ss_pred EEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHh
Q 005611 325 LAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHA 366 (688)
Q Consensus 325 IaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l 366 (688)
|.+||.++.+++++++ ||. .+.++.|+.+++.++++.++
T Consensus 135 Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 135 IITANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred EEEcCChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHH
Confidence 8899999999999998 875 78999999999988876544
No 128
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.47 E-value=4.4e-13 Score=160.21 Aligned_cols=201 Identities=22% Similarity=0.279 Sum_probs=143.8
Q ss_pred cccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEeeC
Q 005611 172 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMAG 241 (688)
Q Consensus 172 v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~----------~~~~~~v~~ 241 (688)
-+++.|+|.++..+.+.+++.. +..++++|+||||||||++++.+|... +.+++.++.
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~ 243 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGR------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI 243 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHcc------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH
Confidence 3578899999998888776432 344578999999999999999999976 467888888
Q ss_pred chhH--HHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCC
Q 005611 242 SEFV--EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTG 319 (688)
Q Consensus 242 ~~~~--~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~ 319 (688)
..+. ..+.|+.+++++.+|..+....++||||||+|.+.+..... ++ . ...+-|...+ .+
T Consensus 244 ~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~-g~--------~-----~~a~lLkp~l----~r 305 (821)
T CHL00095 244 GLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE-GA--------I-----DAANILKPAL----AR 305 (821)
T ss_pred HHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC-Cc--------c-----cHHHHhHHHH----hC
Confidence 8776 35678888999999999988889999999999998664321 11 0 0112222222 24
Q ss_pred CcEEEEEecCCCC-----cCCccccCCCccceeeeccCCChhhHHHHHHHHhcc----CcCC-CccCHHHHHhhCCCC--
Q 005611 320 KGVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASK----VKMS-DSVDLSSYAKNLPGW-- 387 (688)
Q Consensus 320 ~~viVIaaTN~~~-----~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~----~~~~-~~~dl~~la~~t~G~-- 387 (688)
..+.+|++|+..+ ..|+++.+ ||. .|.++.|+.++...|++..... .++. .+..+..++..+.+|
T Consensus 306 g~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 306 GELQCIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred CCcEEEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 6688999998754 47899999 997 5789999999999998765432 1221 222255555555554
Q ss_pred ---CHHHHHHHHHHHHHHHHH
Q 005611 388 ---TGARLAQLVQEAALVAVR 405 (688)
Q Consensus 388 ---s~~dL~~lv~~A~~~A~~ 405 (688)
-|.-.-.++.+|+.....
T Consensus 383 ~r~lPdkaidlld~a~a~~~~ 403 (821)
T CHL00095 383 DRFLPDKAIDLLDEAGSRVRL 403 (821)
T ss_pred cccCchHHHHHHHHHHHHHHh
Confidence 356667788888776644
No 129
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=1.2e-12 Score=150.54 Aligned_cols=210 Identities=25% Similarity=0.350 Sum_probs=148.5
Q ss_pred CCCCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEE---eeCchh
Q 005611 168 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ---MAGSEF 244 (688)
Q Consensus 168 ~~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~---v~~~~~ 244 (688)
...+.+|++|+|++.+++.|++.+.. -+.++.+||+||+|+|||++|+++|+.+.++--. ..|...
T Consensus 11 KyRP~~f~dIiGQe~~v~~L~~aI~~-----------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C 79 (725)
T PRK07133 11 KYRPKTFDDIVGQDHIVQTLKNIIKS-----------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQEC 79 (725)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHH
Confidence 34567999999999999999887652 1455678999999999999999999988664211 011111
Q ss_pred HHH-------H-----hhhhhHHHHHHHHHHHh----CCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHH
Q 005611 245 VEV-------L-----VGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQ 308 (688)
Q Consensus 245 ~~~-------~-----~g~~~~~~r~~f~~A~~----~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (688)
... + ...+...+|.+.+.+.. ....|++|||+|.+... ..+.
T Consensus 80 ~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~----------------------A~NA 137 (725)
T PRK07133 80 IENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKS----------------------AFNA 137 (725)
T ss_pred HHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHH----------------------HHHH
Confidence 100 0 00123446777766553 34569999999986422 3477
Q ss_pred HHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCcc-CHHHHHhhCCCC
Q 005611 309 LLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV-DLSSYAKNLPGW 387 (688)
Q Consensus 309 LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~-dl~~la~~t~G~ 387 (688)
|+..|+. ++..+++|.+|+.++.|.+.+++ |+. ++++.+|+.++..+.++..+.+.++..+. .+..++..+.|
T Consensus 138 LLKtLEE--PP~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G- 211 (725)
T PRK07133 138 LLKTLEE--PPKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG- 211 (725)
T ss_pred HHHHhhc--CCCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 8888874 45567777788889999999998 764 89999999999999998887665544322 26667777776
Q ss_pred CHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 005611 388 TGARLAQLVQEAALVAVRKGHESILSSDMDDAV 420 (688)
Q Consensus 388 s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al 420 (688)
+.+++.+++..+.... ...|+.+++.+.+
T Consensus 212 slR~AlslLekl~~y~----~~~It~e~V~ell 240 (725)
T PRK07133 212 SLRDALSIAEQVSIFG----NNKITLKNVEELF 240 (725)
T ss_pred CHHHHHHHHHHHHHhc----cCCCCHHHHHHHH
Confidence 8888888888876542 2348888887664
No 130
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.47 E-value=7e-14 Score=161.36 Aligned_cols=140 Identities=14% Similarity=0.143 Sum_probs=100.9
Q ss_pred HhhhhhHHHHHHHHHHHHhhhhhhhhhhhhccCCcccceeccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 005611 66 VWPIARPFVNIFRGLILGIIENISDYIVDLSGEGGILSKFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKN 145 (688)
Q Consensus 66 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (688)
++++......+..++++++| ++.+.+|.+|.|.+++++.|...+..|+..+...+..++....+.
T Consensus 223 ~~~~~~~~~~~~~~~~l~~g---------------~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~ 287 (569)
T PRK10789 223 FDPTIYIAIGMANLLAIGGG---------------SWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAY 287 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHH---------------HHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555566677777 888999999999999999999999999999999999999988889
Q ss_pred ccccccccccccccccccccccCCCCcccccc-cccHHH-HHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHH
Q 005611 146 FRKWDLWQGIDFSRSKAEARVDGSTGVKFSDV-AGIDEA-VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTL 223 (688)
Q Consensus 146 ~r~~~~~~~~~~~~~~~~~~~~~~~~v~f~dV-~G~~~~-k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~ 223 (688)
.|+.++++..+...............+.|+++ +.++.. ...++++ ++.++++..+.|+||+|+||||
T Consensus 288 ~ri~~ll~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~~~~~l~~i-----------~~~i~~G~~~~ivG~sGsGKST 356 (569)
T PRK10789 288 SRIRAMLAEAPVVKDGSEPVPEGRGELDVNIRQFTYPQTDHPALENV-----------NFTLKPGQMLGICGPTGSGKST 356 (569)
T ss_pred HHHHHHHcCCCcccCCCCCCCCCCCcEEEEEEEEECCCCCCccccCe-----------eEEECCCCEEEEECCCCCCHHH
Confidence 99888776532211111111122345788887 444321 1112222 5567888889999999999999
Q ss_pred HHHHHHHh
Q 005611 224 VAKAIAGE 231 (688)
Q Consensus 224 La~alA~~ 231 (688)
|++.+++.
T Consensus 357 Ll~ll~g~ 364 (569)
T PRK10789 357 LLSLIQRH 364 (569)
T ss_pred HHHHHhcc
Confidence 99999983
No 131
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=1.2e-12 Score=147.82 Aligned_cols=203 Identities=22% Similarity=0.289 Sum_probs=143.1
Q ss_pred CCCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-------------
Q 005611 169 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP------------- 235 (688)
Q Consensus 169 ~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~------------- 235 (688)
..+.+|++++|++.+++.|.+.+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 10 yRP~~F~dIIGQe~iv~~L~~aI~~-----------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~s 78 (605)
T PRK05896 10 YRPHNFKQIIGQELIKKILVNAILN-----------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSV 78 (605)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 3467899999999999988876532 2456789999999999999999999987542
Q ss_pred -----------EEEeeCchhHHHHhhhhhHHHHHHHHHHHhC----CCeEEEEcccchhhhhhcCCccCcchhhhhhhhH
Q 005611 236 -----------FYQMAGSEFVEVLVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQ 300 (688)
Q Consensus 236 -----------~~~v~~~~~~~~~~g~~~~~~r~~f~~A~~~----~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~ 300 (688)
++.+++.. ..+-..+|.++..+... ...|++|||+|.+...
T Consensus 79 Cr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~------------------ 134 (605)
T PRK05896 79 CESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTS------------------ 134 (605)
T ss_pred HHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHH------------------
Confidence 11222110 11233466666554432 3459999999986321
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCC-CccCHHH
Q 005611 301 ERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSS 379 (688)
Q Consensus 301 ~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~-~~~dl~~ 379 (688)
..+.|+..++. ++..+++|.+|+.+..+.+.+++ |+. .+++++|+.++....++..+.+.+.. ++..+..
T Consensus 135 ----A~NaLLKtLEE--Pp~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~ 205 (605)
T PRK05896 135 ----AWNALLKTLEE--PPKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDK 205 (605)
T ss_pred ----HHHHHHHHHHh--CCCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 23677777763 44567777788889999999988 764 78999999999999998887665432 2223667
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 005611 380 YAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 420 (688)
Q Consensus 380 la~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al 420 (688)
++..+.| +.+++.++++...... + ..|+.+++.+.+
T Consensus 206 La~lS~G-dlR~AlnlLekL~~y~---~-~~It~e~V~ell 241 (605)
T PRK05896 206 IADLADG-SLRDGLSILDQLSTFK---N-SEIDIEDINKTF 241 (605)
T ss_pred HHHHcCC-cHHHHHHHHHHHHhhc---C-CCCCHHHHHHHh
Confidence 7777766 8888888888755443 3 238888887754
No 132
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=1.6e-12 Score=148.73 Aligned_cols=210 Identities=21% Similarity=0.248 Sum_probs=148.0
Q ss_pred CCCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEee-------C
Q 005611 169 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA-------G 241 (688)
Q Consensus 169 ~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~-------~ 241 (688)
...-+|+||+|++.+++.|.+.+.. -+.++.+||+||+|+|||++|+++|+.+++.....+ |
T Consensus 18 yRP~~f~dliGq~~~v~~L~~~~~~-----------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c 86 (598)
T PRK09111 18 YRPQTFDDLIGQEAMVRTLTNAFET-----------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC 86 (598)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC
Confidence 3457999999999999999887642 245678999999999999999999998876421111 1
Q ss_pred c---h---hHHH----------HhhhhhHHHHHHHHHHHhC----CCeEEEEcccchhhhhhcCCccCcchhhhhhhhHH
Q 005611 242 S---E---FVEV----------LVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE 301 (688)
Q Consensus 242 ~---~---~~~~----------~~g~~~~~~r~~f~~A~~~----~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~ 301 (688)
. . +.+. -...+...+|.++..+... ...|++|||+|.+..
T Consensus 87 g~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~-------------------- 146 (598)
T PRK09111 87 GVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST-------------------- 146 (598)
T ss_pred cccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH--------------------
Confidence 1 0 0000 0011344677777666432 356999999988642
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCc-cCHHHH
Q 005611 302 RETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSY 380 (688)
Q Consensus 302 ~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~-~dl~~l 380 (688)
...|.|+..|+. ...++++|.+|+.++.+.+.+++ |+ ..++++.|+.++....++..+.+.+..-+ ..+..+
T Consensus 147 --~a~naLLKtLEe--Pp~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lI 219 (598)
T PRK09111 147 --AAFNALLKTLEE--PPPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALI 219 (598)
T ss_pred --HHHHHHHHHHHh--CCCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 224677777764 34556666677778888888887 75 57999999999999999988876654433 235666
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHH
Q 005611 381 AKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 421 (688)
Q Consensus 381 a~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al~ 421 (688)
++.+.| +.+++.+++..+... +...|+.+++.+.+.
T Consensus 220 a~~a~G-dlr~al~~Ldkli~~----g~g~It~e~V~~llg 255 (598)
T PRK09111 220 ARAAEG-SVRDGLSLLDQAIAH----GAGEVTAEAVRDMLG 255 (598)
T ss_pred HHHcCC-CHHHHHHHHHHHHhh----cCCCcCHHHHHHHhC
Confidence 777766 899999998887644 235699998887654
No 133
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.46 E-value=1.8e-12 Score=130.39 Aligned_cols=194 Identities=21% Similarity=0.335 Sum_probs=131.1
Q ss_pred ccCCCCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCc
Q 005611 166 VDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 242 (688)
Q Consensus 166 ~~~~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~ 242 (688)
+.....+.+++++|++.+++.|.+-...+.. ..+..++||+|+.|||||+++|++..+. |+.++.+...
T Consensus 18 i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~ 89 (249)
T PF05673_consen 18 IKHPDPIRLDDLIGIERQKEALIENTEQFLQ--------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKE 89 (249)
T ss_pred cCCCCCCCHHHhcCHHHHHHHHHHHHHHHHc--------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHH
Confidence 3445689999999999999998876654322 2467789999999999999999999866 6778888766
Q ss_pred hhHHHHhhhhhHHHHHHHHHHH-hCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCC--CCC
Q 005611 243 EFVEVLVGVGSARIRDLFKRAK-VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF--DTG 319 (688)
Q Consensus 243 ~~~~~~~g~~~~~~r~~f~~A~-~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~--~~~ 319 (688)
++.. +..++...+ ...+-|||+||+.- - . . ......|-..|||- ..+
T Consensus 90 ~L~~---------l~~l~~~l~~~~~kFIlf~DDLsF-e-~----------------~---d~~yk~LKs~LeGgle~~P 139 (249)
T PF05673_consen 90 DLGD---------LPELLDLLRDRPYKFILFCDDLSF-E-E----------------G---DTEYKALKSVLEGGLEARP 139 (249)
T ss_pred Hhcc---------HHHHHHHHhcCCCCEEEEecCCCC-C-C----------------C---cHHHHHHHHHhcCccccCC
Confidence 5432 333444433 23456999999641 1 1 1 11224455555653 456
Q ss_pred CcEEEEEecCCCCcCCccccC---------------------CCccceeeeccCCChhhHHHHHHHHhccCcCCCcc-C-
Q 005611 320 KGVIFLAATNRRDLLDPALLR---------------------PGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV-D- 376 (688)
Q Consensus 320 ~~viVIaaTN~~~~Ld~aL~r---------------------~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~-d- 376 (688)
.+|++.||+|+...+++.... ..||..++.|.+|+.++-.+|++.++.+.++.-+. +
T Consensus 140 ~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l 219 (249)
T PF05673_consen 140 DNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEEL 219 (249)
T ss_pred CcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 789999999985544322111 13899999999999999999999999876655431 1
Q ss_pred ---HHHHHhhCCCCCHHHHHHHHH
Q 005611 377 ---LSSYAKNLPGWTGARLAQLVQ 397 (688)
Q Consensus 377 ---l~~la~~t~G~s~~dL~~lv~ 397 (688)
....|....|.||+-..+.++
T Consensus 220 ~~~Al~wa~~rg~RSGRtA~QF~~ 243 (249)
T PF05673_consen 220 RQEALQWALRRGGRSGRTARQFID 243 (249)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 223344445566665555444
No 134
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=2.4e-12 Score=144.57 Aligned_cols=203 Identities=23% Similarity=0.282 Sum_probs=144.3
Q ss_pred CCCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-------------
Q 005611 169 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP------------- 235 (688)
Q Consensus 169 ~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~------------- 235 (688)
..+.+|++|+|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++++.+.++
T Consensus 8 yRP~~fdeiiGqe~v~~~L~~~I~~-----------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~ 76 (535)
T PRK08451 8 YRPKHFDELIGQESVSKTLSLALDN-----------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQ 76 (535)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 3467899999999999999887642 1456678999999999999999999987431
Q ss_pred -----------EEEeeCchhHHHHhhhhhHHHHHHHHHHHh----CCCeEEEEcccchhhhhhcCCccCcchhhhhhhhH
Q 005611 236 -----------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQ 300 (688)
Q Consensus 236 -----------~~~v~~~~~~~~~~g~~~~~~r~~f~~A~~----~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~ 300 (688)
++..+... ..+...+|.....+.. ....|++|||+|.+...
T Consensus 77 C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~------------------ 132 (535)
T PRK08451 77 CQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKE------------------ 132 (535)
T ss_pred HHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH------------------
Confidence 22222211 0123456666654332 22359999999886422
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCC-ccCHHH
Q 005611 301 ERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLSS 379 (688)
Q Consensus 301 ~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~-~~dl~~ 379 (688)
..+.|+..++.. +.++.+|.+|+.+..+.+++++ | ...++|.+++.++..+.++..+.+.+..- +..+..
T Consensus 133 ----A~NALLK~LEEp--p~~t~FIL~ttd~~kL~~tI~S--R-c~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~ 203 (535)
T PRK08451 133 ----AFNALLKTLEEP--PSYVKFILATTDPLKLPATILS--R-TQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEI 203 (535)
T ss_pred ----HHHHHHHHHhhc--CCceEEEEEECChhhCchHHHh--h-ceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 346777777743 4556666677778999999998 7 46899999999999998888887655442 234667
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 005611 380 YAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 420 (688)
Q Consensus 380 la~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al 420 (688)
+++...| +.+++.+++..+...+ ...|+.+++.+.+
T Consensus 204 Ia~~s~G-dlR~alnlLdqai~~~----~~~It~~~V~~~l 239 (535)
T PRK08451 204 LARSGNG-SLRDTLTLLDQAIIYC----KNAITESKVADML 239 (535)
T ss_pred HHHHcCC-cHHHHHHHHHHHHHhc----CCCCCHHHHHHHh
Confidence 7777766 8999999998887665 3457777776543
No 135
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.45 E-value=2e-12 Score=141.89 Aligned_cols=222 Identities=24% Similarity=0.275 Sum_probs=132.5
Q ss_pred cccc-ccccHHHHHHHHHHHHH-hcChhhhhcc--CC-CCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHH-
Q 005611 173 KFSD-VAGIDEAVEELQELVRY-LKNPELFDKM--GI-KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE- 246 (688)
Q Consensus 173 ~f~d-V~G~~~~k~~L~~ii~~-l~~~~~~~~~--g~-~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~- 246 (688)
.+++ |+|++.+++.|...+.. ++.-...... .. .+..++||+||||||||++|+++|+.++.||+.++++.+..
T Consensus 68 ~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~ 147 (412)
T PRK05342 68 HLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEA 147 (412)
T ss_pred HHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccC
Confidence 3444 79999999999765532 2211100000 11 23467999999999999999999999999999999987653
Q ss_pred HHhhhhhHH-HHHHHHHH----HhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCC----
Q 005611 247 VLVGVGSAR-IRDLFKRA----KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD---- 317 (688)
Q Consensus 247 ~~~g~~~~~-~r~~f~~A----~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~---- 317 (688)
.|+|..... +..++..+ ....++||||||+|.+..++.+.... .+.....+.+.||..|++-.
T Consensus 148 gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~--------~d~s~~~vQ~~LL~~Leg~~~~v~ 219 (412)
T PRK05342 148 GYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSIT--------RDVSGEGVQQALLKILEGTVASVP 219 (412)
T ss_pred CcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcC--------CCcccHHHHHHHHHHHhcCeEEeC
Confidence 466654333 33333321 23467899999999998763221100 01111234466666666421
Q ss_pred -------CCCcEEEEEecCCCC----------------------------------------------------cCCccc
Q 005611 318 -------TGKGVIFLAATNRRD----------------------------------------------------LLDPAL 338 (688)
Q Consensus 318 -------~~~~viVIaaTN~~~----------------------------------------------------~Ld~aL 338 (688)
.....++|.|+|-.. -+.|++
T Consensus 220 ~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEf 299 (412)
T PRK05342 220 PQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEF 299 (412)
T ss_pred CCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHH
Confidence 112356666666410 023344
Q ss_pred cCCCccceeeeccCCChhhHHHHHHH----Hhcc-------CcCCCcc---CHHHHHhh--CCCCCHHHHHHHHHHHHHH
Q 005611 339 LRPGRFDRKIRIRAPNAKGRTEILKI----HASK-------VKMSDSV---DLSSYAKN--LPGWTGARLAQLVQEAALV 402 (688)
Q Consensus 339 ~r~gRf~~~I~i~~Pd~~eR~~Il~~----~l~~-------~~~~~~~---dl~~la~~--t~G~s~~dL~~lv~~A~~~ 402 (688)
+ ||++.++.+.+.+.++..+|+.. .+++ .+..-.+ -+..+++. ..++-.|.|+.++++...-
T Consensus 300 l--gRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~ 377 (412)
T PRK05342 300 I--GRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLD 377 (412)
T ss_pred h--CCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHH
Confidence 4 48999999999999999998873 2221 1111111 24556654 3445566777776666554
Q ss_pred HH
Q 005611 403 AV 404 (688)
Q Consensus 403 A~ 404 (688)
..
T Consensus 378 ~~ 379 (412)
T PRK05342 378 VM 379 (412)
T ss_pred HH
Confidence 43
No 136
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.44 E-value=1.6e-12 Score=132.62 Aligned_cols=194 Identities=24% Similarity=0.287 Sum_probs=131.4
Q ss_pred cccCCCCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCE------EE
Q 005611 165 RVDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPF------YQ 238 (688)
Q Consensus 165 ~~~~~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~------~~ 238 (688)
..+...+.+|+++.|++.+.+.|++.+.. +...+.|||||||||||+.++++|+++..+- ..
T Consensus 26 wteKYrPkt~de~~gQe~vV~~L~~a~~~------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ 93 (346)
T KOG0989|consen 26 WTEKYRPKTFDELAGQEHVVQVLKNALLR------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLE 93 (346)
T ss_pred hHHHhCCCcHHhhcchHHHHHHHHHHHhh------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhh
Confidence 44566778999999999999999887543 2233689999999999999999999997732 22
Q ss_pred eeCchhHHHHhhhhhHHHHHHHHHHHhC------CC----eEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHH
Q 005611 239 MAGSEFVEVLVGVGSARIRDLFKRAKVN------KP----SVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQ 308 (688)
Q Consensus 239 v~~~~~~~~~~g~~~~~~r~~f~~A~~~------~p----~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (688)
.+.++....- ....+++ -|++.... .| .|++|||+|.+... +.+.
T Consensus 94 lnaSderGis--vvr~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd----------------------aq~a 148 (346)
T KOG0989|consen 94 LNASDERGIS--VVREKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD----------------------AQAA 148 (346)
T ss_pred hccccccccc--chhhhhc-CHHHHhhccccccCCCCCcceEEEEechhhhhHH----------------------HHHH
Confidence 2333322211 1112221 13332221 12 59999999997643 2356
Q ss_pred HHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccC-HHHHHhhCCCC
Q 005611 309 LLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKNLPGW 387 (688)
Q Consensus 309 LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~d-l~~la~~t~G~ 387 (688)
|...|+.+ .+++.+|..||..+.|.+.+.+ |.. .+.|++.+.+.-.+.|+..+.+.++.-+.+ +..++..+.|
T Consensus 149 Lrr~mE~~--s~~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G- 222 (346)
T KOG0989|consen 149 LRRTMEDF--SRTTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG- 222 (346)
T ss_pred HHHHHhcc--ccceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-
Confidence 66667653 4567777789999999999998 754 677877777777788888887766654444 6677777766
Q ss_pred CHHHHHHHHHHHHH
Q 005611 388 TGARLAQLVQEAAL 401 (688)
Q Consensus 388 s~~dL~~lv~~A~~ 401 (688)
+-++....++.+..
T Consensus 223 dLR~Ait~Lqsls~ 236 (346)
T KOG0989|consen 223 DLRRAITTLQSLSL 236 (346)
T ss_pred cHHHHHHHHHHhhc
Confidence 66666666665543
No 137
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=1.8e-12 Score=148.74 Aligned_cols=201 Identities=22% Similarity=0.330 Sum_probs=145.2
Q ss_pred CCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC--------------
Q 005611 170 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------------- 235 (688)
Q Consensus 170 ~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~-------------- 235 (688)
.+-+|+||+|++.+++.|++.+.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c 79 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAIDT-----------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPC 79 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHH
Confidence 457899999999999999887642 2456678999999999999999999987653
Q ss_pred ----------EEEeeCchhHHHHhhhhhHHHHHHHHHHHhC----CCeEEEEcccchhhhhhcCCccCcchhhhhhhhHH
Q 005611 236 ----------FYQMAGSEFVEVLVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE 301 (688)
Q Consensus 236 ----------~~~v~~~~~~~~~~g~~~~~~r~~f~~A~~~----~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~ 301 (688)
++.+++.. ..+...+|.+...+... ...|++|||+|.+...
T Consensus 80 ~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~------------------- 134 (576)
T PRK14965 80 VEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTN------------------- 134 (576)
T ss_pred HHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHH-------------------
Confidence 22222211 11234566666655422 3359999999986432
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCC-ccCHHHH
Q 005611 302 RETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLSSY 380 (688)
Q Consensus 302 ~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~-~~dl~~l 380 (688)
..|.|+..|+. ...++++|.+||.++.|.+.+++ |+ ..++|..++.++....++..+++.++.- +..+..+
T Consensus 135 ---a~naLLk~LEe--pp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~l 206 (576)
T PRK14965 135 ---AFNALLKTLEE--PPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALV 206 (576)
T ss_pred ---HHHHHHHHHHc--CCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 24778887773 44577777788889999999998 75 4888999999998888888877665442 2346777
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHH
Q 005611 381 AKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDA 419 (688)
Q Consensus 381 a~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~A 419 (688)
++.+.| +.+++.+++..+.... + ..|+.+|+...
T Consensus 207 a~~a~G-~lr~al~~Ldqliay~---g-~~It~edV~~l 240 (576)
T PRK14965 207 ARKGDG-SMRDSLSTLDQVLAFC---G-DAVGDDDVAEL 240 (576)
T ss_pred HHHcCC-CHHHHHHHHHHHHHhc---c-CCCCHHHHHHH
Confidence 777777 8888888888776554 2 35888887655
No 138
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=2.4e-12 Score=140.67 Aligned_cols=210 Identities=21% Similarity=0.332 Sum_probs=141.3
Q ss_pred CCCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchh----
Q 005611 169 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF---- 244 (688)
Q Consensus 169 ~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~---- 244 (688)
..+.+|+|++|++.+++.+.+.+.. -+.+++++||||||+|||++++++++...++.....+..+
T Consensus 11 ~rP~~~~~iig~~~~~~~l~~~i~~-----------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~ 79 (367)
T PRK14970 11 YRPQTFDDVVGQSHITNTLLNAIEN-----------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI 79 (367)
T ss_pred HCCCcHHhcCCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce
Confidence 3567999999999999888777542 1345689999999999999999999987552211100000
Q ss_pred --HHHHhhhhhHHHHHHHHHHHh----CCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCC
Q 005611 245 --VEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT 318 (688)
Q Consensus 245 --~~~~~g~~~~~~r~~f~~A~~----~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~ 318 (688)
.+.....+...++.++..+.. ..+.||+|||+|.+... .++.++..++. .
T Consensus 80 ~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~----------------------~~~~ll~~le~--~ 135 (367)
T PRK14970 80 FELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSA----------------------AFNAFLKTLEE--P 135 (367)
T ss_pred EEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHH----------------------HHHHHHHHHhC--C
Confidence 000011123456666665542 24569999999876421 23566666653 2
Q ss_pred CCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCC-CccCHHHHHhhCCCCCHHHHHHHHH
Q 005611 319 GKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQ 397 (688)
Q Consensus 319 ~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~-~~~dl~~la~~t~G~s~~dL~~lv~ 397 (688)
+...++|.+|+.+..+.+++.+ |+ ..+++++|+.++...++...+.+.+.. ++..+..++..+.| +.+.+.+.++
T Consensus 136 ~~~~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~le 211 (367)
T PRK14970 136 PAHAIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFD 211 (367)
T ss_pred CCceEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 3445566667778888888887 65 478999999999999998888766543 23346777777665 7788888877
Q ss_pred HHHHHHHHhCCccccHHHHHHHHH
Q 005611 398 EAALVAVRKGHESILSSDMDDAVD 421 (688)
Q Consensus 398 ~A~~~A~~~~~~~I~~~di~~Al~ 421 (688)
....++ +.. |+.++++..+.
T Consensus 212 kl~~y~---~~~-it~~~v~~~~~ 231 (367)
T PRK14970 212 RVVTFC---GKN-ITRQAVTENLN 231 (367)
T ss_pred HHHHhc---CCC-CCHHHHHHHhC
Confidence 766554 333 88888877664
No 139
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.44 E-value=1.6e-12 Score=131.51 Aligned_cols=200 Identities=22% Similarity=0.320 Sum_probs=123.7
Q ss_pred CCcccccc-ccc--HHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEeeC
Q 005611 170 TGVKFSDV-AGI--DEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAG 241 (688)
Q Consensus 170 ~~v~f~dV-~G~--~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~-----~~~~~~v~~ 241 (688)
++.+|++. .|- +.+....+.+.. ++. .....++||||+|+|||+|+++++++. +..++++++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~---~~~-------~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~ 72 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAE---NPG-------ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA 72 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHH---STT-------TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHh---cCC-------CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH
Confidence 56789997 453 233333333322 221 122358999999999999999998864 567899999
Q ss_pred chhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCc
Q 005611 242 SEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKG 321 (688)
Q Consensus 242 ~~~~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ 321 (688)
.+|...+...........|.. .....++|+||+++.+.++. ..+..+..++..+ ....+
T Consensus 73 ~~f~~~~~~~~~~~~~~~~~~-~~~~~DlL~iDDi~~l~~~~-----------------~~q~~lf~l~n~~---~~~~k 131 (219)
T PF00308_consen 73 EEFIREFADALRDGEIEEFKD-RLRSADLLIIDDIQFLAGKQ-----------------RTQEELFHLFNRL---IESGK 131 (219)
T ss_dssp HHHHHHHHHHHHTTSHHHHHH-HHCTSSEEEEETGGGGTTHH-----------------HHHHHHHHHHHHH---HHTTS
T ss_pred HHHHHHHHHHHHcccchhhhh-hhhcCCEEEEecchhhcCch-----------------HHHHHHHHHHHHH---HhhCC
Confidence 998877655432222222322 23456799999999986542 1122223333332 23344
Q ss_pred EEEEEecCCCCc---CCccccCCCccc--eeeeccCCChhhHHHHHHHHhccCcCCCccC-HHHHHhhCCCCCHHHHHHH
Q 005611 322 VIFLAATNRRDL---LDPALLRPGRFD--RKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKNLPGWTGARLAQL 395 (688)
Q Consensus 322 viVIaaTN~~~~---Ld~aL~r~gRf~--~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~d-l~~la~~t~G~s~~dL~~l 395 (688)
.+|+++...|.. +++.|.+ ||. .++.+.+|+.+.|.+|++..+...++.-+.+ +..++++.++ +.++|..+
T Consensus 132 ~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~ 208 (219)
T PF00308_consen 132 QLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGA 208 (219)
T ss_dssp EEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHH
T ss_pred eEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHH
Confidence 566666666665 4677777 664 4899999999999999999998776664333 5667777665 89999999
Q ss_pred HHHHHHHH
Q 005611 396 VQEAALVA 403 (688)
Q Consensus 396 v~~A~~~A 403 (688)
+++-..++
T Consensus 209 l~~l~~~~ 216 (219)
T PF00308_consen 209 LNRLDAYA 216 (219)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99877665
No 140
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=2.4e-12 Score=144.53 Aligned_cols=209 Identities=23% Similarity=0.299 Sum_probs=141.7
Q ss_pred CCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-------EEE-eeC
Q 005611 170 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------FYQ-MAG 241 (688)
Q Consensus 170 ~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~-------~~~-v~~ 241 (688)
.+-+|++++|++.+.+.|++.+.. .+.++.+||+||+|+|||++|+.+|+.+++. .-. .+|
T Consensus 11 RP~~f~diiGq~~i~~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc 79 (486)
T PRK14953 11 RPKFFKEVIGQEIVVRILKNAVKL-----------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENC 79 (486)
T ss_pred CCCcHHHccChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHH
Confidence 456899999999999998887643 1345568999999999999999999987642 000 000
Q ss_pred chhHH----------HHhhhhhHHHHHHHHHHHh----CCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHH
Q 005611 242 SEFVE----------VLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLN 307 (688)
Q Consensus 242 ~~~~~----------~~~g~~~~~~r~~f~~A~~----~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 307 (688)
..+.. .-...+...+|.+...+.. ..+.|++|||+|.+... ..+
T Consensus 80 ~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~----------------------a~n 137 (486)
T PRK14953 80 VEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKE----------------------AFN 137 (486)
T ss_pred HHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHH----------------------HHH
Confidence 00000 0001123335555544432 34569999999986422 236
Q ss_pred HHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCcc-CHHHHHhhCCC
Q 005611 308 QLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV-DLSSYAKNLPG 386 (688)
Q Consensus 308 ~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~-dl~~la~~t~G 386 (688)
.|+..++. .+..+++|.+|+.++.+++++.+ |+. .+.+++|+.++....++.+++..++..+. .+..++..+.|
T Consensus 138 aLLk~LEe--pp~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G 212 (486)
T PRK14953 138 ALLKTLEE--PPPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG 212 (486)
T ss_pred HHHHHHhc--CCCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 67777764 23445555566778888888887 664 78999999999999999988776654332 36667777766
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHH
Q 005611 387 WTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 421 (688)
Q Consensus 387 ~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al~ 421 (688)
+.+++.++++.+... +...|+.+++.+++.
T Consensus 213 -~lr~al~~Ldkl~~~----~~~~It~~~V~~~lg 242 (486)
T PRK14953 213 -GMRDAASLLDQASTY----GEGKVTIKVVEEFLG 242 (486)
T ss_pred -CHHHHHHHHHHHHHh----cCCCcCHHHHHHHhC
Confidence 888998998887644 244688888887653
No 141
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=2e-12 Score=142.46 Aligned_cols=214 Identities=19% Similarity=0.256 Sum_probs=143.1
Q ss_pred CCCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEE----------E
Q 005611 169 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFY----------Q 238 (688)
Q Consensus 169 ~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~----------~ 238 (688)
..+.+|++|+|++.+++.|+..+.. .+.++.++|+||||+|||++|+++|+.+.+.-. .
T Consensus 10 ~RP~~~~eiiGq~~~~~~L~~~~~~-----------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~ 78 (397)
T PRK14955 10 YRPKKFADITAQEHITRTIQNSLRM-----------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT 78 (397)
T ss_pred cCCCcHhhccChHHHHHHHHHHHHh-----------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC
Confidence 3567899999999999988877542 245667999999999999999999998876310 0
Q ss_pred eeCchh---HHH----------Hhh---hhhHHHHHHHHHHHh----CCCeEEEEcccchhhhhhcCCccCcchhhhhhh
Q 005611 239 MAGSEF---VEV----------LVG---VGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAA 298 (688)
Q Consensus 239 v~~~~~---~~~----------~~g---~~~~~~r~~f~~A~~----~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~ 298 (688)
..|... ... +.+ .+...++.+.+.+.. ....|++|||+|.+...
T Consensus 79 ~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~---------------- 142 (397)
T PRK14955 79 EPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA---------------- 142 (397)
T ss_pred CCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH----------------
Confidence 011100 000 011 123455555544421 23459999999986422
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCC-CccCH
Q 005611 299 TQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDL 377 (688)
Q Consensus 299 ~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~-~~~dl 377 (688)
..+.++..++. .+..+++|.+|+.+..+.+++++ |.. .+++++++.++..+.++..+++.+.. ++..+
T Consensus 143 ------~~~~LLk~LEe--p~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al 211 (397)
T PRK14955 143 ------AFNAFLKTLEE--PPPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADAL 211 (397)
T ss_pred ------HHHHHHHHHhc--CCCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 23566666663 33455555566667788888887 654 78999999999888888887655433 22236
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHHHHH-hCCccccHHHHHHHHH
Q 005611 378 SSYAKNLPGWTGARLAQLVQEAALVAVR-KGHESILSSDMDDAVD 421 (688)
Q Consensus 378 ~~la~~t~G~s~~dL~~lv~~A~~~A~~-~~~~~I~~~di~~Al~ 421 (688)
..++..+.| +.+.+.+.++.+...+.. .....|+.+++.+.+.
T Consensus 212 ~~l~~~s~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v~ 255 (397)
T PRK14955 212 QLIGRKAQG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELLN 255 (397)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHHC
Confidence 677777766 888888888887766532 2345899988887763
No 142
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.43 E-value=6e-13 Score=142.04 Aligned_cols=214 Identities=24% Similarity=0.367 Sum_probs=132.9
Q ss_pred CCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCC-ceEEEEcCCCChHHHHHHHHHHhc-------CCCE--EEe
Q 005611 170 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPP-HGVLLEGPPGCGKTLVAKAIAGEA-------GVPF--YQM 239 (688)
Q Consensus 170 ~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~-~gvLL~GppGtGKT~La~alA~~~-------~~~~--~~v 239 (688)
....|++|+|++++++.|.-.. +.++ .++||.|+||||||++|+++++-+ ++++ ..+
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~-------------~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTA-------------IDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHH-------------hccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 4578999999999988775431 1122 579999999999999999999977 3321 111
Q ss_pred eC-chh--------HH---------------HHhhh---------hhH-HHHHHHHHHHhCCCeEEEEcccchhhhhhcC
Q 005611 240 AG-SEF--------VE---------------VLVGV---------GSA-RIRDLFKRAKVNKPSVIFIDEIDALATRRQG 285 (688)
Q Consensus 240 ~~-~~~--------~~---------------~~~g~---------~~~-~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~ 285 (688)
.+ .+. .. ...|. +.. .....+.+| +..+||+||++.+.++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A---~~GiL~lDEInrl~~~~-- 144 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARA---NRGYLYIDEVNLLEDHI-- 144 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEc---CCCeEEecChHhCCHHH--
Confidence 10 000 00 01110 000 001111111 22499999999865432
Q ss_pred CccCcchhhhhhhhHHHHHHHHHHHHHhcCC-----------CCCCcEEEEEecCCCC-cCCccccCCCccceeeeccCC
Q 005611 286 IFKDTTDHLYNAATQERETTLNQLLIELDGF-----------DTGKGVIFLAATNRRD-LLDPALLRPGRFDRKIRIRAP 353 (688)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~-----------~~~~~viVIaaTN~~~-~Ld~aL~r~gRf~~~I~i~~P 353 (688)
...|+..|+.- ..+..+++|+++|..+ .++++++. ||...+.+++|
T Consensus 145 --------------------q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~ 202 (334)
T PRK13407 145 --------------------VDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSP 202 (334)
T ss_pred --------------------HHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCC
Confidence 23444444321 1235689999999755 58899998 99999999988
Q ss_pred Ch-hhHHHHHHHHhccCc----C------CC---------------cc--C------HHHHHhhCCCCC-HHHHHHHHHH
Q 005611 354 NA-KGRTEILKIHASKVK----M------SD---------------SV--D------LSSYAKNLPGWT-GARLAQLVQE 398 (688)
Q Consensus 354 d~-~eR~~Il~~~l~~~~----~------~~---------------~~--d------l~~la~~t~G~s-~~dL~~lv~~ 398 (688)
.. ++|.+|++....... . .. .+ + +.+++..+.--+ .+++. +++.
T Consensus 203 ~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~a 281 (334)
T PRK13407 203 RDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRA 281 (334)
T ss_pred CcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHH
Confidence 76 899999987542110 0 00 00 0 223333333223 34444 9999
Q ss_pred HHHHHHHhCCccccHHHHHHHHHhhc
Q 005611 399 AALVAVRKGHESILSSDMDDAVDRLT 424 (688)
Q Consensus 399 A~~~A~~~~~~~I~~~di~~Al~~~~ 424 (688)
|...|..+|++.|+.+|+..+..-+.
T Consensus 282 A~a~A~l~Gr~~V~~~Di~~~~~~vl 307 (334)
T PRK13407 282 ARALAAFEGAEAVGRSHLRSVATMAL 307 (334)
T ss_pred HHHHHHHcCCCeeCHHHHHHHHHHhh
Confidence 99999999999999999988775544
No 143
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=3.7e-13 Score=146.60 Aligned_cols=213 Identities=19% Similarity=0.181 Sum_probs=141.0
Q ss_pred ccceeccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccccCCCCcccccc-cc
Q 005611 101 ILSKFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRSKAEARVDGSTGVKFSDV-AG 179 (688)
Q Consensus 101 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~f~dV-~G 179 (688)
..-+.++.+|.|+++-....++++-.|+..++..+..+.....-....+.......-...++.........+.|+|| +.
T Consensus 281 ~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~~~~i~~~~~~I~F~dV~f~ 360 (591)
T KOG0057|consen 281 SNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEAALPIELFGGSIEFDDVHFS 360 (591)
T ss_pred hhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhccCCcccCCCcEEEEeeEEE
Confidence 44477889999999999999999999999999987655443222211111111111111111233444567999999 66
Q ss_pred cHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHH-----------------------------
Q 005611 180 IDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG----------------------------- 230 (688)
Q Consensus 180 ~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~----------------------------- 230 (688)
+.+.++.|+.+ ++.++.++.+.|+|++||||||+.|+|-+
T Consensus 361 y~~k~~iL~gv-----------sf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~ 429 (591)
T KOG0057|consen 361 YGPKRKVLKGV-----------SFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGV 429 (591)
T ss_pred eCCCCceecce-----------eEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeE
Confidence 65444445444 56677788899999999999999999998
Q ss_pred ---------------------------------hcCCCEEEeeCchhHHHHhhh------hhHHHHHHHHHHHhCCCeEE
Q 005611 231 ---------------------------------EAGVPFYQMAGSEFVEVLVGV------GSARIRDLFKRAKVNKPSVI 271 (688)
Q Consensus 231 ---------------------------------~~~~~~~~v~~~~~~~~~~g~------~~~~~r~~f~~A~~~~p~IL 271 (688)
.++.+-...+.++.+.+.+|+ |+++||..+.||..++|.|+
T Consensus 430 VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il 509 (591)
T KOG0057|consen 430 VPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPIL 509 (591)
T ss_pred eCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeE
Confidence 223333344445555566665 78999999999999999999
Q ss_pred EEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeecc
Q 005611 272 FIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIR 351 (688)
Q Consensus 272 ~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~ 351 (688)
++||+++-.++.++ ..++..+-....+++++.|+ ++.+. +. +||+++.+.
T Consensus 510 ~~DEaTS~LD~~TE---------------------~~i~~~i~~~~~~rTvI~Iv--H~l~l-----l~--~~DkI~~l~ 559 (591)
T KOG0057|consen 510 LLDEATSALDSETE---------------------REILDMIMDVMSGRTVIMIV--HRLDL-----LK--DFDKIIVLD 559 (591)
T ss_pred EecCcccccchhhH---------------------HHHHHHHHHhcCCCeEEEEE--ecchh-----Hh--cCCEEEEEE
Confidence 99999987765433 33444433345567777764 32232 22 688877776
Q ss_pred CCC
Q 005611 352 APN 354 (688)
Q Consensus 352 ~Pd 354 (688)
.=.
T Consensus 560 nG~ 562 (591)
T KOG0057|consen 560 NGT 562 (591)
T ss_pred CCe
Confidence 544
No 144
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.43 E-value=4.8e-12 Score=136.76 Aligned_cols=243 Identities=19% Similarity=0.218 Sum_probs=168.6
Q ss_pred cCCCCcccccc-cccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEee
Q 005611 167 DGSTGVKFSDV-AGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMA 240 (688)
Q Consensus 167 ~~~~~v~f~dV-~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~-----~~~~~~v~ 240 (688)
.-.+..+|++. .|-... ....-...+-..|. .+-..++||||+|+|||+|++|+++++ +..+++++
T Consensus 79 ~l~~~ytFdnFv~g~~N~-~A~aa~~~va~~~g-------~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~ 150 (408)
T COG0593 79 GLNPKYTFDNFVVGPSNR-LAYAAAKAVAENPG-------GAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT 150 (408)
T ss_pred cCCCCCchhheeeCCchH-HHHHHHHHHHhccC-------CcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc
Confidence 34578899996 443322 11111111222221 134469999999999999999999876 34588889
Q ss_pred CchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q 005611 241 GSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGK 320 (688)
Q Consensus 241 ~~~~~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~ 320 (688)
..+|...++......-.+.|++-. +-.+++|||++.+..+.. ..++.-.++|.+.. ..
T Consensus 151 se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~~-------------~qeefFh~FN~l~~-------~~ 208 (408)
T COG0593 151 SEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKER-------------TQEEFFHTFNALLE-------NG 208 (408)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCChh-------------HHHHHHHHHHHHHh-------cC
Confidence 899888877765555555666644 566999999999886642 34445555565543 23
Q ss_pred cEEEEEecCCCCc---CCccccCCCccce--eeeccCCChhhHHHHHHHHhccCcCCCccC-HHHHHhhCCCCCHHHHHH
Q 005611 321 GVIFLAATNRRDL---LDPALLRPGRFDR--KIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKNLPGWTGARLAQ 394 (688)
Q Consensus 321 ~viVIaaTN~~~~---Ld~aL~r~gRf~~--~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~d-l~~la~~t~G~s~~dL~~ 394 (688)
+-+|+.+...|.. +.|.|++ ||.. ++.+.+||.+.|..|++......++.-+-+ +..++.+... +.++++.
T Consensus 209 kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~-nvReLeg 285 (408)
T COG0593 209 KQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDR-NVRELEG 285 (408)
T ss_pred CEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc-cHHHHHH
Confidence 4566666666765 4588888 7754 889999999999999999877666553333 5667777665 8999999
Q ss_pred HHHHHHHHHHHhCCccccHHHHHHHHHhhccCCCccCccccCCcchhHHHHHHHHHHHHHH
Q 005611 395 LVQEAALVAVRKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHL 455 (688)
Q Consensus 395 lv~~A~~~A~~~~~~~I~~~di~~Al~~~~~g~~~~~~~~~~~~~~~ia~hE~GhAvv~~~ 455 (688)
++++....+...++ .||.+.+.+++.......+ + +....+-+.|..++
T Consensus 286 aL~~l~~~a~~~~~-~iTi~~v~e~L~~~~~~~~-----------~-itie~I~~~Va~~y 333 (408)
T COG0593 286 ALNRLDAFALFTKR-AITIDLVKEILKDLLRAGE-----------K-ITIEDIQKIVAEYY 333 (408)
T ss_pred HHHHHHHHHHhcCc-cCcHHHHHHHHHHhhcccc-----------c-CCHHHHHHHHHHHh
Confidence 99999999877665 8999999999987765332 2 45556666666554
No 145
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.43 E-value=2.1e-12 Score=133.73 Aligned_cols=208 Identities=22% Similarity=0.356 Sum_probs=133.9
Q ss_pred CCcccccccccHHHHHHHHHHHHH-hcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC---EEEeeCchhH
Q 005611 170 TGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP---FYQMAGSEFV 245 (688)
Q Consensus 170 ~~v~f~dV~G~~~~k~~L~~ii~~-l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~---~~~v~~~~~~ 245 (688)
.+-+++|.+|++....+ ..++.. ++. ..-..++||||||||||+||+.|+.....+ |+.++...
T Consensus 133 RPktL~dyvGQ~hlv~q-~gllrs~ieq---------~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~-- 200 (554)
T KOG2028|consen 133 RPKTLDDYVGQSHLVGQ-DGLLRSLIEQ---------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN-- 200 (554)
T ss_pred CcchHHHhcchhhhcCc-chHHHHHHHc---------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc--
Confidence 35678899999877655 222222 211 112368999999999999999999988776 66666543
Q ss_pred HHHhhhhhHHHHHHHHHHHh-----CCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q 005611 246 EVLVGVGSARIRDLFKRAKV-----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGK 320 (688)
Q Consensus 246 ~~~~g~~~~~~r~~f~~A~~-----~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~ 320 (688)
.+.+.+|++|+.++. ....||||||++.+...++. .+|-. ..+.
T Consensus 201 -----a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD----------------------~fLP~----VE~G 249 (554)
T KOG2028|consen 201 -----AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQD----------------------TFLPH----VENG 249 (554)
T ss_pred -----cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhh----------------------cccce----eccC
Confidence 234568888888754 34569999999997654432 22222 2346
Q ss_pred cEEEEEec-CCCC-cCCccccCCCccceeeeccCCChhhHHHHHHHHhccC--------cCCC------ccCHHHHHhhC
Q 005611 321 GVIFLAAT-NRRD-LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKV--------KMSD------SVDLSSYAKNL 384 (688)
Q Consensus 321 ~viVIaaT-N~~~-~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~--------~~~~------~~dl~~la~~t 384 (688)
.+++|++| .+|. .|..+|++ | ++++.+...+.+....||.+-..-+ +++. +.-++.++..+
T Consensus 250 ~I~lIGATTENPSFqln~aLlS--R-C~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~ls 326 (554)
T KOG2028|consen 250 DITLIGATTENPSFQLNAALLS--R-CRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLS 326 (554)
T ss_pred ceEEEecccCCCccchhHHHHh--c-cceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhc
Confidence 67777765 3444 68999998 6 4688888888888888888744311 1111 11267788888
Q ss_pred CCCCHHHHHHHHHHHH-HHHHHhC---CccccHHHHHHHHHhhc
Q 005611 385 PGWTGARLAQLVQEAA-LVAVRKG---HESILSSDMDDAVDRLT 424 (688)
Q Consensus 385 ~G~s~~dL~~lv~~A~-~~A~~~~---~~~I~~~di~~Al~~~~ 424 (688)
.|=..+.|.. +.-+. ....+.+ +..++.+|+++++.+-.
T Consensus 327 dGDaR~aLN~-Lems~~m~~tr~g~~~~~~lSidDvke~lq~s~ 369 (554)
T KOG2028|consen 327 DGDARAALNA-LEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRSH 369 (554)
T ss_pred CchHHHHHHH-HHHHHHHHHhhcCCcccceecHHHHHHHHhhcc
Confidence 8843333333 33332 2223333 34788999999987654
No 146
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=6.7e-12 Score=135.89 Aligned_cols=217 Identities=19% Similarity=0.304 Sum_probs=152.3
Q ss_pred cccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----EEEeeCchhHHHH--
Q 005611 176 DVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-----FYQMAGSEFVEVL-- 248 (688)
Q Consensus 176 dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~-----~~~v~~~~~~~~~-- 248 (688)
.+.+.++.++.+..++....+ ...|.+++++||||||||..++.+++++.-+ ++++||....+.+
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~--------~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 18 ELPHREEEINQLASFLAPALR--------GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred cccccHHHHHHHHHHHHHHhc--------CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 388999999998887664222 2345569999999999999999999987433 8899986544321
Q ss_pred ----h---------hhhhHH-HHHHHHHHH-hCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHh
Q 005611 249 ----V---------GVGSAR-IRDLFKRAK-VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIEL 313 (688)
Q Consensus 249 ----~---------g~~~~~-~r~~f~~A~-~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~l 313 (688)
. |..... ...+++... ....-||+|||+|.+..+.+ ..+..|+...
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-------------------~~LY~L~r~~ 150 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-------------------EVLYSLLRAP 150 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-------------------hHHHHHHhhc
Confidence 1 111111 222222222 34567999999999986632 3455665554
Q ss_pred cCCCCCCcEEEEEecCCCC---cCCccccCCCcc-ceeeeccCCChhhHHHHHHHHhccCcCCCcc--C----HHHHHhh
Q 005611 314 DGFDTGKGVIFLAATNRRD---LLDPALLRPGRF-DRKIRIRAPNAKGRTEILKIHASKVKMSDSV--D----LSSYAKN 383 (688)
Q Consensus 314 d~~~~~~~viVIaaTN~~~---~Ld~aL~r~gRf-~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~--d----l~~la~~ 383 (688)
+.. ..++.+|+.+|..+ .+|+.+.+ ++ ...|.||+++.+|..+|++......-..... + +..++..
T Consensus 151 ~~~--~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~ 226 (366)
T COG1474 151 GEN--KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAA 226 (366)
T ss_pred ccc--ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHH
Confidence 433 56789999999864 68999988 44 3468999999999999999888643222211 1 3334455
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHhhc
Q 005611 384 LPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLT 424 (688)
Q Consensus 384 t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al~~~~ 424 (688)
..| +.+-...+|+.|...|.+++.+.++.+++..|.+...
T Consensus 227 ~~G-DAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~ 266 (366)
T COG1474 227 ESG-DARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIE 266 (366)
T ss_pred cCc-cHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhh
Confidence 555 7788889999999999999999999999999955443
No 147
>PRK05642 DNA replication initiation factor; Validated
Probab=99.42 E-value=8.7e-12 Score=127.62 Aligned_cols=180 Identities=15% Similarity=0.201 Sum_probs=121.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhc
Q 005611 208 PHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQ 284 (688)
Q Consensus 208 ~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~ 284 (688)
...++|+||+|+|||+|++++++++ +..+++++..++.... ...++... ...+|+|||++.+..+..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~--~~d~LiiDDi~~~~~~~~ 114 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLE--QYELVCLDDLDVIAGKAD 114 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhh--hCCEEEEechhhhcCChH
Confidence 3578999999999999999998754 5678888887765431 12222222 335899999998754321
Q ss_pred CCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCc---CCccccCCCcc--ceeeeccCCChhhHH
Q 005611 285 GIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDL---LDPALLRPGRF--DRKIRIRAPNAKGRT 359 (688)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~---Ld~aL~r~gRf--~~~I~i~~Pd~~eR~ 359 (688)
.+..+..++.. +..+++.++++++..|.. ..+.+++ || ..++.+.+|+.++|.
T Consensus 115 -----------------~~~~Lf~l~n~---~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~ 172 (234)
T PRK05642 115 -----------------WEEALFHLFNR---LRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKL 172 (234)
T ss_pred -----------------HHHHHHHHHHH---HHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHH
Confidence 11222333332 233445677777766654 3688888 77 468889999999999
Q ss_pred HHHHHHhccCcCCC-ccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHH
Q 005611 360 EILKIHASKVKMSD-SVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 421 (688)
Q Consensus 360 ~Il~~~l~~~~~~~-~~dl~~la~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al~ 421 (688)
++++.++...++.- +.-+..++++.++ +.+.+.++++.-...+.. .++.||..-+++++.
T Consensus 173 ~il~~ka~~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~l~-~~~~it~~~~~~~L~ 233 (234)
T PRK05642 173 RALQLRASRRGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQASLQ-AQRKLTIPFLKETLG 233 (234)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH-cCCcCCHHHHHHHhc
Confidence 99997665544332 2236777787777 899999999987654544 346688888777653
No 148
>PRK06620 hypothetical protein; Validated
Probab=99.42 E-value=3.3e-12 Score=128.80 Aligned_cols=196 Identities=16% Similarity=0.256 Sum_probs=125.6
Q ss_pred CCCCcccccc-ccc--HHHHHHHHHHHHHhcChhhhhccCCCC-CceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCch
Q 005611 168 GSTGVKFSDV-AGI--DEAVEELQELVRYLKNPELFDKMGIKP-PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 243 (688)
Q Consensus 168 ~~~~v~f~dV-~G~--~~~k~~L~~ii~~l~~~~~~~~~g~~~-~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~ 243 (688)
..+..+|++. +|- +.+...++++.+ .+ +..+ ...++||||||||||+|++++++..+..++. ...
T Consensus 9 ~~~~~tfd~Fvvg~~N~~a~~~~~~~~~---~~------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~ 77 (214)
T PRK06620 9 TSSKYHPDEFIVSSSNDQAYNIIKNWQC---GF------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIF 77 (214)
T ss_pred CCCCCCchhhEecccHHHHHHHHHHHHH---cc------ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhh
Confidence 3456789996 443 234444444422 11 2222 2579999999999999999999988753322 111
Q ss_pred hHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEE
Q 005611 244 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 323 (688)
Q Consensus 244 ~~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~vi 323 (688)
. . ...+ ...++|+|||+|.+. ..+...++|.+ ....+.+
T Consensus 78 ~-----~------~~~~-----~~~d~lliDdi~~~~------------------~~~lf~l~N~~-------~e~g~~i 116 (214)
T PRK06620 78 F-----N------EEIL-----EKYNAFIIEDIENWQ------------------EPALLHIFNII-------NEKQKYL 116 (214)
T ss_pred h-----c------hhHH-----hcCCEEEEeccccch------------------HHHHHHHHHHH-------HhcCCEE
Confidence 0 0 0111 234689999999531 11122222332 2334567
Q ss_pred EEEecCCCCc--CCccccCCCccc--eeeeccCCChhhHHHHHHHHhccCcCCC-ccCHHHHHhhCCCCCHHHHHHHHHH
Q 005611 324 FLAATNRRDL--LDPALLRPGRFD--RKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLSSYAKNLPGWTGARLAQLVQE 398 (688)
Q Consensus 324 VIaaTN~~~~--Ld~aL~r~gRf~--~~I~i~~Pd~~eR~~Il~~~l~~~~~~~-~~dl~~la~~t~G~s~~dL~~lv~~ 398 (688)
+|+++..|.. + ++|++ |+. .++.+++|+.+.+..+++..+...++.- +.-++.++.+..+ +.+.+.++++.
T Consensus 117 lits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~ 192 (214)
T PRK06620 117 LLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILEN 192 (214)
T ss_pred EEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHH
Confidence 7777766654 5 77887 765 4799999999999999998887554432 2236778888877 89999999998
Q ss_pred HHHHHHHhCCccccHHHHHHHH
Q 005611 399 AALVAVRKGHESILSSDMDDAV 420 (688)
Q Consensus 399 A~~~A~~~~~~~I~~~di~~Al 420 (688)
....+...+ ..||...+++++
T Consensus 193 l~~~~~~~~-~~it~~~~~~~l 213 (214)
T PRK06620 193 INYFALISK-RKITISLVKEVL 213 (214)
T ss_pred HHHHHHHcC-CCCCHHHHHHHh
Confidence 654454443 578988888765
No 149
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=5e-12 Score=140.98 Aligned_cols=203 Identities=21% Similarity=0.311 Sum_probs=140.7
Q ss_pred CCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC--------------
Q 005611 170 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------------- 235 (688)
Q Consensus 170 ~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~-------------- 235 (688)
.+.+|+||+|++.+++.|++.+.. -+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 12 RP~~~~diiGq~~~v~~L~~~i~~-----------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 12 RPQTFSEILGQDAVVAVLKNALRF-----------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 457999999999999988887642 1456679999999999999999999987542
Q ss_pred -----------EEEeeCchhHHHHhhhhhHHHHHHHHHH----HhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhH
Q 005611 236 -----------FYQMAGSEFVEVLVGVGSARIRDLFKRA----KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQ 300 (688)
Q Consensus 236 -----------~~~v~~~~~~~~~~g~~~~~~r~~f~~A----~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~ 300 (688)
++.+++... .+...++.+.+.. ......|++|||+|.+...
T Consensus 81 C~~i~~~~~~d~~~i~g~~~------~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~------------------ 136 (451)
T PRK06305 81 CKEISSGTSLDVLEIDGASH------RGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKE------------------ 136 (451)
T ss_pred HHHHhcCCCCceEEeecccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHH------------------
Confidence 222222110 1122333333222 2245679999999986422
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCC-ccCHHH
Q 005611 301 ERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLSS 379 (688)
Q Consensus 301 ~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~-~~dl~~ 379 (688)
..+.|+..++. .+.++++|.+||.+..+.+++++ |+ ..+++++++.++..+.++..+.+.+..- +..+..
T Consensus 137 ----~~n~LLk~lEe--p~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~ 207 (451)
T PRK06305 137 ----AFNSLLKTLEE--PPQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLP 207 (451)
T ss_pred ----HHHHHHHHhhc--CCCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 23677777774 34566777777888889999988 76 4789999999999998888876655432 234677
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHH
Q 005611 380 YAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 421 (688)
Q Consensus 380 la~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al~ 421 (688)
++..+.| +.+++.+.++...... + ..|+.+++.+++.
T Consensus 208 L~~~s~g-dlr~a~~~Lekl~~~~---~-~~It~~~V~~l~~ 244 (451)
T PRK06305 208 IARAAQG-SLRDAESLYDYVVGLF---P-KSLDPDSVAKALG 244 (451)
T ss_pred HHHHcCC-CHHHHHHHHHHHHHhc---c-CCcCHHHHHHHHC
Confidence 7877766 7777777777655432 2 3488888877663
No 150
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=4e-12 Score=144.80 Aligned_cols=202 Identities=19% Similarity=0.259 Sum_probs=143.7
Q ss_pred CCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC--------------
Q 005611 170 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------------- 235 (688)
Q Consensus 170 ~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~-------------- 235 (688)
.+.+|+||+|++.+++.|+..+.. -+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 11 RP~~f~diiGqe~iv~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C 79 (563)
T PRK06647 11 RPRDFNSLEGQDFVVETLKHSIES-----------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSC 79 (563)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHH
Confidence 467899999999999998887642 1345679999999999999999999988653
Q ss_pred ----------EEEeeCchhHHHHhhhhhHHHHHHHHHHH----hCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHH
Q 005611 236 ----------FYQMAGSEFVEVLVGVGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE 301 (688)
Q Consensus 236 ----------~~~v~~~~~~~~~~g~~~~~~r~~f~~A~----~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~ 301 (688)
++.+++.. ..+.+.+|.+.+.+. .....|++|||+|.+..
T Consensus 80 ~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~-------------------- 133 (563)
T PRK06647 80 KSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN-------------------- 133 (563)
T ss_pred HHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH--------------------
Confidence 11111110 012234555554433 23456999999998642
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCC-ccCHHHH
Q 005611 302 RETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLSSY 380 (688)
Q Consensus 302 ~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~-~~dl~~l 380 (688)
...+.|+..++. .+..+++|.+|+.+..+.+++++ |+. .+++.+|+.++..+.++..+.+.+..- +..+..+
T Consensus 134 --~a~naLLK~LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lL 206 (563)
T PRK06647 134 --SAFNALLKTIEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWI 206 (563)
T ss_pred --HHHHHHHHhhcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 234677777773 44567777777878889999988 765 789999999999999988886655442 2236667
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 005611 381 AKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 420 (688)
Q Consensus 381 a~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al 420 (688)
++...| +.+++.+++..+...+ ...++.+++...+
T Consensus 207 a~~s~G-dlR~alslLdklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 207 AYKSTG-SVRDAYTLFDQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred HHHcCC-CHHHHHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 777766 8999999988876543 2458888777654
No 151
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.41 E-value=6.8e-12 Score=130.64 Aligned_cols=189 Identities=18% Similarity=0.202 Sum_probs=115.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCch------hHHHHhhhhhHHHH--------------------HHHH
Q 005611 208 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE------FVEVLVGVGSARIR--------------------DLFK 261 (688)
Q Consensus 208 ~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~------~~~~~~g~~~~~~r--------------------~~f~ 261 (688)
+..++|+||||||||++|+++|+..+.+++.++|.. +...+.+....... ..+.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 457999999999999999999999999999997754 22222211111111 1122
Q ss_pred HHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHh----cCC-------CCCCcEEEEEecCC
Q 005611 262 RAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIEL----DGF-------DTGKGVIFLAATNR 330 (688)
Q Consensus 262 ~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~l----d~~-------~~~~~viVIaaTN~ 330 (688)
.|.. ...+|+|||++.+.+ +....+..++++- .+. ..+.++.||+|+|.
T Consensus 101 ~A~~-~g~~lllDEi~r~~~-------------------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~ 160 (262)
T TIGR02640 101 LAVR-EGFTLVYDEFTRSKP-------------------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNP 160 (262)
T ss_pred HHHH-cCCEEEEcchhhCCH-------------------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCC
Confidence 2332 345999999998532 2233333333321 000 01236789999997
Q ss_pred CC-----cCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCcc--CHHHHHhh------CCCCCHHHHHHHHH
Q 005611 331 RD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV--DLSSYAKN------LPGWTGARLAQLVQ 397 (688)
Q Consensus 331 ~~-----~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~--dl~~la~~------t~G~s~~dL~~lv~ 397 (688)
.. .+++++++ || ..+.++.|+.++..+|++.+.. ..+.. .+..++.. ....+.+..-.+++
T Consensus 161 ~~~~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~---~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~ 234 (262)
T TIGR02640 161 VEYAGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD---VAEDSAATIVRLVREFRASGDEITSGLRASLMIAE 234 (262)
T ss_pred ccccceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHH
Confidence 53 56889998 87 5899999999999999998752 22111 11222211 11233444444444
Q ss_pred HHHHHHHHhCCccccHHHHHHHHHhhcc
Q 005611 398 EAALVAVRKGHESILSSDMDDAVDRLTV 425 (688)
Q Consensus 398 ~A~~~A~~~~~~~I~~~di~~Al~~~~~ 425 (688)
..+....+..++.+||.+....+..
T Consensus 235 ---~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (262)
T TIGR02640 235 ---VATQQDIPVDVDDEDFVDLCIDILA 259 (262)
T ss_pred ---HHHHcCCCCCCCcHHHHHHHHHHhc
Confidence 4444456778889999888776653
No 152
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.41 E-value=6.9e-12 Score=134.04 Aligned_cols=205 Identities=21% Similarity=0.251 Sum_probs=134.6
Q ss_pred ccCCCCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-----CEEEee
Q 005611 166 VDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV-----PFYQMA 240 (688)
Q Consensus 166 ~~~~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~-----~~~~v~ 240 (688)
.+...+.+|+|++|.+++++.|+..+.. . ...+++|+||||||||++++++++++.. +++.++
T Consensus 8 ~~kyrP~~~~~~~g~~~~~~~l~~~i~~---~---------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~ 75 (319)
T PRK00440 8 VEKYRPRTLDEIVGQEEIVERLKSYVKE---K---------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELN 75 (319)
T ss_pred chhhCCCcHHHhcCcHHHHHHHHHHHhC---C---------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEec
Confidence 3444567999999999999988877532 1 1125899999999999999999998732 344554
Q ss_pred CchhHHHHhhhhhHHHHHHHHHHHh------CCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhc
Q 005611 241 GSEFVEVLVGVGSARIRDLFKRAKV------NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD 314 (688)
Q Consensus 241 ~~~~~~~~~g~~~~~~r~~f~~A~~------~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld 314 (688)
+++... ...++..+..... ..+.+|+|||+|.+.... .+.++..++
T Consensus 76 ~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~----------------------~~~L~~~le 127 (319)
T PRK00440 76 ASDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDA----------------------QQALRRTME 127 (319)
T ss_pred cccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHH----------------------HHHHHHHHh
Confidence 433211 1112222221111 235699999999864321 133444444
Q ss_pred CCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCC-CccCHHHHHhhCCCCCHHHHH
Q 005611 315 GFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLA 393 (688)
Q Consensus 315 ~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~-~~~dl~~la~~t~G~s~~dL~ 393 (688)
... .+..+|.++|.+..+.+++.+ |+. .+++++|+.++...+++.++++.+.. ++..+..++..+.| +.+.+.
T Consensus 128 ~~~--~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~ 201 (319)
T PRK00440 128 MYS--QNTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAI 201 (319)
T ss_pred cCC--CCCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 333 234555567777777777877 665 68999999999999999988766543 23347778877765 667766
Q ss_pred HHHHHHHHHHHHhCCccccHHHHHHHHH
Q 005611 394 QLVQEAALVAVRKGHESILSSDMDDAVD 421 (688)
Q Consensus 394 ~lv~~A~~~A~~~~~~~I~~~di~~Al~ 421 (688)
+.++.+... ...|+.+++..++.
T Consensus 202 ~~l~~~~~~-----~~~it~~~v~~~~~ 224 (319)
T PRK00440 202 NALQAAAAT-----GKEVTEEAVYKITG 224 (319)
T ss_pred HHHHHHHHc-----CCCCCHHHHHHHhC
Confidence 666654432 35799999988764
No 153
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.40 E-value=1.9e-12 Score=149.83 Aligned_cols=122 Identities=17% Similarity=0.115 Sum_probs=89.7
Q ss_pred cccceeccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccc--cccc-ccCCCCccccc
Q 005611 100 GILSKFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRSK--AEAR-VDGSTGVKFSD 176 (688)
Q Consensus 100 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~--~~~~-~~~~~~v~f~d 176 (688)
|++.+.+|.+|.|.++++..|...+..|+..+...+...+....+..|+.++++..+..... .... .+....++|+|
T Consensus 263 g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (576)
T TIGR02204 263 GAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQ 342 (576)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCccCCcCCCceEEEEE
Confidence 46667789999999999999999999999999999999999999888888776642211111 0011 11223588999
Q ss_pred c-cccHHH--HHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 005611 177 V-AGIDEA--VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 232 (688)
Q Consensus 177 V-~G~~~~--k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~ 232 (688)
| +.+++. +..|+++ ++.++++..++++||+|+|||||++.+++..
T Consensus 343 v~f~y~~~~~~~iL~~i-----------nl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~ 390 (576)
T TIGR02204 343 VNFAYPARPDQPALDGL-----------NLTVRPGETVALVGPSGAGKSTLFQLLLRFY 390 (576)
T ss_pred EEEECCCCCCCccccce-----------eEEecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 8 555421 1223222 5678899999999999999999999999843
No 154
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.39 E-value=2.6e-12 Score=137.43 Aligned_cols=221 Identities=20% Similarity=0.250 Sum_probs=141.7
Q ss_pred CCCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcC-------CCEEEeeC
Q 005611 169 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG-------VPFYQMAG 241 (688)
Q Consensus 169 ~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~-------~~~~~v~~ 241 (688)
++...|++|+|+++.|..|...+ .+| ...+++|.||+|||||+++++++..+. .||. ...
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~---~~p---------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p 77 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNV---IDP---------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHP 77 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhc---cCC---------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCC
Confidence 35678999999999998885442 222 234899999999999999999987552 2332 100
Q ss_pred -------chhHHHH-------------------hhhhhHH------HHHHHHHHH---------hCCCeEEEEcccchhh
Q 005611 242 -------SEFVEVL-------------------VGVGSAR------IRDLFKRAK---------VNKPSVIFIDEIDALA 280 (688)
Q Consensus 242 -------~~~~~~~-------------------~g~~~~~------~r~~f~~A~---------~~~p~IL~LDEiD~l~ 280 (688)
++..... .|....+ +...+.... .....+||+||++.+.
T Consensus 78 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~ 157 (350)
T CHL00081 78 SDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD 157 (350)
T ss_pred CChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC
Confidence 0011000 0111111 111221111 1123599999999876
Q ss_pred hhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcC---------C--CCCCcEEEEEecCCCC-cCCccccCCCccceee
Q 005611 281 TRRQGIFKDTTDHLYNAATQERETTLNQLLIELDG---------F--DTGKGVIFLAATNRRD-LLDPALLRPGRFDRKI 348 (688)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~---------~--~~~~~viVIaaTN~~~-~Ld~aL~r~gRf~~~I 348 (688)
+..+ ..|+..|+. . ..+.++++|++.|..+ .++++++. ||...+
T Consensus 158 ~~~Q----------------------~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i 213 (350)
T CHL00081 158 DHLV----------------------DILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHA 213 (350)
T ss_pred HHHH----------------------HHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCcee
Confidence 4432 234444321 1 1235688898888655 59999999 999999
Q ss_pred eccCCC-hhhHHHHHHHHhccC--cCC-----------------------CccC--------HHHHHhhCCCCCHHHHHH
Q 005611 349 RIRAPN-AKGRTEILKIHASKV--KMS-----------------------DSVD--------LSSYAKNLPGWTGARLAQ 394 (688)
Q Consensus 349 ~i~~Pd-~~eR~~Il~~~l~~~--~~~-----------------------~~~d--------l~~la~~t~G~s~~dL~~ 394 (688)
.+..|+ .+.+.+|++...... +.. ..+. +.+++..+.--+++.-..
T Consensus 214 ~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~ 293 (350)
T CHL00081 214 EIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIV 293 (350)
T ss_pred ecCCCCChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHH
Confidence 999997 599999998753211 000 0010 333444444446788888
Q ss_pred HHHHHHHHHHHhCCccccHHHHHHHHHhhccC
Q 005611 395 LVQEAALVAVRKGHESILSSDMDDAVDRLTVG 426 (688)
Q Consensus 395 lv~~A~~~A~~~~~~~I~~~di~~Al~~~~~g 426 (688)
+++-|...|..+|++.++.+|+..+..-+...
T Consensus 294 l~raArA~Aal~GR~~V~pdDv~~~a~~vL~H 325 (350)
T CHL00081 294 TNRAAKALAAFEGRTEVTPKDIFKVITLCLRH 325 (350)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999999998777654
No 155
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=9.7e-12 Score=142.55 Aligned_cols=213 Identities=18% Similarity=0.266 Sum_probs=143.1
Q ss_pred CCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEE----------e
Q 005611 170 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ----------M 239 (688)
Q Consensus 170 ~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~----------v 239 (688)
.+.+|++|+|++.+++.|++.+.. -+.++.+||+||+|+|||++|+.+|+.+.+.--. .
T Consensus 11 RP~~f~eivGQe~i~~~L~~~i~~-----------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~ 79 (620)
T PRK14954 11 RPSKFADITAQEHITHTIQNSLRM-----------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE 79 (620)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC
Confidence 467899999999999998886542 2456679999999999999999999998773100 0
Q ss_pred eCch---hHHH----------Hhh---hhhHHHHHHHHHHH----hCCCeEEEEcccchhhhhhcCCccCcchhhhhhhh
Q 005611 240 AGSE---FVEV----------LVG---VGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAAT 299 (688)
Q Consensus 240 ~~~~---~~~~----------~~g---~~~~~~r~~f~~A~----~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~ 299 (688)
.|.. .... +.+ .+...+|.+.+.+. .....|++|||+|.+...
T Consensus 80 ~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~----------------- 142 (620)
T PRK14954 80 PCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA----------------- 142 (620)
T ss_pred CCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH-----------------
Confidence 1111 0000 011 12345666655552 234569999999886422
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCC-CccCHH
Q 005611 300 QERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLS 378 (688)
Q Consensus 300 ~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~-~~~dl~ 378 (688)
..+.|+..++. .+..+++|.+|+.+..+.+.+++ |. ..+++.+++.++....++..+.+.+.. ++..+.
T Consensus 143 -----a~naLLK~LEe--Pp~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~ 212 (620)
T PRK14954 143 -----AFNAFLKTLEE--PPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQ 212 (620)
T ss_pred -----HHHHHHHHHhC--CCCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 23677777774 33445555566777888888887 54 589999999999888888777654432 233467
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHHHHH-hCCccccHHHHHHHHH
Q 005611 379 SYAKNLPGWTGARLAQLVQEAALVAVR-KGHESILSSDMDDAVD 421 (688)
Q Consensus 379 ~la~~t~G~s~~dL~~lv~~A~~~A~~-~~~~~I~~~di~~Al~ 421 (688)
.++..+.| +.+++.+.++....++.. .....|+.+++.+.+.
T Consensus 213 ~La~~s~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv~ 255 (620)
T PRK14954 213 LIARKAQG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELLN 255 (620)
T ss_pred HHHHHhCC-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHHc
Confidence 77777766 788888888776655421 2245788888877653
No 156
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.38 E-value=1.1e-11 Score=133.82 Aligned_cols=86 Identities=29% Similarity=0.493 Sum_probs=59.6
Q ss_pred cccccHHHHHHHHHHHHH-hcChhhhhcc-CCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHH-HHhh-h
Q 005611 176 DVAGIDEAVEELQELVRY-LKNPELFDKM-GIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE-VLVG-V 251 (688)
Q Consensus 176 dV~G~~~~k~~L~~ii~~-l~~~~~~~~~-g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~-~~~g-~ 251 (688)
.|+|++++++.+...+.. ++.......+ .-.+|++++|+||||||||++|+++|+.++.||+.+++..+.+ .|+| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 379999999999766553 2222111111 1235689999999999999999999999999999999877654 4555 2
Q ss_pred hhHHHHHHHH
Q 005611 252 GSARIRDLFK 261 (688)
Q Consensus 252 ~~~~~r~~f~ 261 (688)
.++.++.+|.
T Consensus 93 vE~i~r~l~e 102 (441)
T TIGR00390 93 VESMVRDLTD 102 (441)
T ss_pred HHHHHHHHHH
Confidence 3333444333
No 157
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.38 E-value=8.7e-12 Score=136.26 Aligned_cols=223 Identities=22% Similarity=0.271 Sum_probs=132.4
Q ss_pred cccc-ccccHHHHHHHHHHHHH-hcChhh----hhccCC-CCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhH
Q 005611 173 KFSD-VAGIDEAVEELQELVRY-LKNPEL----FDKMGI-KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 245 (688)
Q Consensus 173 ~f~d-V~G~~~~k~~L~~ii~~-l~~~~~----~~~~g~-~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~ 245 (688)
.+++ |+|++++++.+...+.. ++.-.. ...-+. ....++||+||||||||++|+++|+.++.||..+++..+.
T Consensus 74 ~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~ 153 (413)
T TIGR00382 74 HLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLT 153 (413)
T ss_pred HhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcc
Confidence 3444 69999999999776532 221110 000011 1235799999999999999999999999999999887754
Q ss_pred H-HHhhhh-hHHHHHHHHHH----HhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCC--
Q 005611 246 E-VLVGVG-SARIRDLFKRA----KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD-- 317 (688)
Q Consensus 246 ~-~~~g~~-~~~~r~~f~~A----~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~-- 317 (688)
. .|+|.. +..+...+..+ ....++||||||+|.+..++.+.... .+...+.+.+.||+.|++..
T Consensus 154 ~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~--------~dvsg~~vq~~LL~iLeG~~~~ 225 (413)
T TIGR00382 154 EAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSIT--------RDVSGEGVQQALLKIIEGTVAN 225 (413)
T ss_pred ccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhcccccc--------ccccchhHHHHHHHHhhcccee
Confidence 2 355653 22333333322 23467899999999998754321110 00011134455666665431
Q ss_pred ---------CCCcEEEEEecCCCC--------------------------------------------------cCCccc
Q 005611 318 ---------TGKGVIFLAATNRRD--------------------------------------------------LLDPAL 338 (688)
Q Consensus 318 ---------~~~~viVIaaTN~~~--------------------------------------------------~Ld~aL 338 (688)
+..+.++|.|+|-.. -+.|++
T Consensus 226 v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEf 305 (413)
T TIGR00382 226 VPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEF 305 (413)
T ss_pred cccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHH
Confidence 123467788877510 022444
Q ss_pred cCCCccceeeeccCCChhhHHHHHHHH----hccC-------cCCC---ccCHHHHHhh--CCCCCHHHHHHHHHHHHHH
Q 005611 339 LRPGRFDRKIRIRAPNAKGRTEILKIH----ASKV-------KMSD---SVDLSSYAKN--LPGWTGARLAQLVQEAALV 402 (688)
Q Consensus 339 ~r~gRf~~~I~i~~Pd~~eR~~Il~~~----l~~~-------~~~~---~~dl~~la~~--t~G~s~~dL~~lv~~A~~~ 402 (688)
+ ||++.++.+.+.+.++..+|+... +++. ++.- +.-+..+++. ...+-.|.|+.++++....
T Consensus 306 l--gRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~ 383 (413)
T TIGR00382 306 I--GRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLD 383 (413)
T ss_pred h--CCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHH
Confidence 4 489999999999999999988753 2211 1111 1114556654 3345567777777766655
Q ss_pred HHH
Q 005611 403 AVR 405 (688)
Q Consensus 403 A~~ 405 (688)
...
T Consensus 384 ~m~ 386 (413)
T TIGR00382 384 VMF 386 (413)
T ss_pred HHh
Confidence 543
No 158
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.38 E-value=6.1e-13 Score=152.85 Aligned_cols=139 Identities=15% Similarity=0.107 Sum_probs=102.0
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhhhhhhhccCCcccceeccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 005611 67 WPIARPFVNIFRGLILGIIENISDYIVDLSGEGGILSKFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNF 146 (688)
Q Consensus 67 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (688)
+++...+..+...+++++| ++.+.+|.+|.|++++++.+...+..|+..+...+..++....+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~g---------------~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ 292 (544)
T TIGR01842 228 SNLSKYFRIVLQSLVLGLG---------------AYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYK 292 (544)
T ss_pred HHHHHHHHHHHHHHHHHHH---------------HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444556677787 8889999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccccccccCCCCcccccc-cccHHH-HHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHH
Q 005611 147 RKWDLWQGIDFSRSKAEARVDGSTGVKFSDV-AGIDEA-VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLV 224 (688)
Q Consensus 147 r~~~~~~~~~~~~~~~~~~~~~~~~v~f~dV-~G~~~~-k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~L 224 (688)
|+.++++..+..... .........+.|+++ +.++.. +..++++ ++.++++..+.|+||+|+|||||
T Consensus 293 ri~~~l~~~~~~~~~-~~~~~~~~~i~~~~v~~~y~~~~~~~l~~~-----------~~~i~~G~~~~ivG~sGsGKSTL 360 (544)
T TIGR01842 293 RLNELLANYPSRDPA-MPLPEPEGHLSVENVTIVPPGGKKPTLRGI-----------SFRLQAGEALAIIGPSGSGKSTL 360 (544)
T ss_pred HHHHHHhCCccccCC-CCCCCCCCeEEEEEEEEEcCCCCccccccc-----------eEEEcCCCEEEEECCCCCCHHHH
Confidence 998887653222111 111122345888888 555321 1122222 56678888999999999999999
Q ss_pred HHHHHHhc
Q 005611 225 AKAIAGEA 232 (688)
Q Consensus 225 a~alA~~~ 232 (688)
++.+++..
T Consensus 361 ~~ll~g~~ 368 (544)
T TIGR01842 361 ARLIVGIW 368 (544)
T ss_pred HHHHhCCC
Confidence 99999843
No 159
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.37 E-value=2.8e-13 Score=146.11 Aligned_cols=241 Identities=17% Similarity=0.197 Sum_probs=164.3
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhccCCcccceeccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Q 005611 70 ARPFVNIFRGLILGIIENISDYIVDLSGEGGILSKFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKW 149 (688)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 149 (688)
...+-+..-..+++.| .|++++|.+|.|.++|....+....-|+-+...-+..+..++.+-.|+.
T Consensus 249 Sr~~Rm~lQs~iLg~G---------------A~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~ 313 (580)
T COG4618 249 SRALRMALQSAVLGLG---------------AWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLN 313 (580)
T ss_pred HHHHHHHHHHHHHhcc---------------eeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445567777777 9999999999999999999999999999999998888888888888888
Q ss_pred ccccccccccccccccccCCCCcccccccccHH--HHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHH
Q 005611 150 DLWQGIDFSRSKAEARVDGSTGVKFSDVAGIDE--AVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKA 227 (688)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~v~f~dV~G~~~--~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~a 227 (688)
+++......... -.....+..++.+++....+ .+..++.+ ++.+.++..+-+.||+|+|||||+|.
T Consensus 314 ~lL~~~p~~~~~-m~LP~P~g~L~Ve~l~~~PPg~~~pil~~i-----------sF~l~~G~~lgIIGPSgSGKSTLaR~ 381 (580)
T COG4618 314 ELLAELPAAAER-MPLPAPQGALSVERLTAAPPGQKKPILKGI-----------SFALQAGEALGIIGPSGSGKSTLARL 381 (580)
T ss_pred HHHHhCccccCC-CCCCCCCceeeEeeeeecCCCCCCcceecc-----------eeEecCCceEEEECCCCccHHHHHHH
Confidence 777764433322 22334455666777632211 11223222 66678889999999999999999999
Q ss_pred HHH---------------------------------------------------------------hcCCCEEEeeCchh
Q 005611 228 IAG---------------------------------------------------------------EAGVPFYQMAGSEF 244 (688)
Q Consensus 228 lA~---------------------------------------------------------------~~~~~~~~v~~~~~ 244 (688)
+.+ .++++-.....++.
T Consensus 382 lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~G 461 (580)
T COG4618 382 LVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQG 461 (580)
T ss_pred HHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCC
Confidence 987 12334444445555
Q ss_pred HHHHhhh------hhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCC
Q 005611 245 VEVLVGV------GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT 318 (688)
Q Consensus 245 ~~~~~g~------~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~ 318 (688)
+++.+|+ +++++|..+++|...+|.+++|||-++-++..+ +..+..-+..+ .
T Consensus 462 YdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~G------------------E~AL~~Ai~~~---k- 519 (580)
T COG4618 462 YDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEG------------------EAALAAAILAA---K- 519 (580)
T ss_pred ccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhH------------------HHHHHHHHHHH---H-
Confidence 5555665 688999999999999999999999988655433 33333333333 2
Q ss_pred CCcEEEEEecCCCCcC---Ccc-ccCCCccceeeeccCCChhhHHHHHHHHhc
Q 005611 319 GKGVIFLAATNRRDLL---DPA-LLRPGRFDRKIRIRAPNAKGRTEILKIHAS 367 (688)
Q Consensus 319 ~~~viVIaaTN~~~~L---d~a-L~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~ 367 (688)
.++.++|..|++|..+ |.- ++..||.. ..-.|.+++....+
T Consensus 520 ~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~--------~FG~r~eVLa~~~~ 564 (580)
T COG4618 520 ARGGTVVVIAHRPSALASVDKILVLQDGRIA--------AFGPREEVLAKVLR 564 (580)
T ss_pred HcCCEEEEEecCHHHHhhcceeeeecCChHH--------hcCCHHHHHHHhcC
Confidence 3455556668887753 332 22334432 23345667776665
No 160
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.37 E-value=8.3e-12 Score=138.67 Aligned_cols=207 Identities=22% Similarity=0.322 Sum_probs=155.0
Q ss_pred CCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCE--EEeeCchhH--
Q 005611 170 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPF--YQMAGSEFV-- 245 (688)
Q Consensus 170 ~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~--~~v~~~~~~-- 245 (688)
.+-+|+|++|++.+...|++.+..= +..++.|+.||.|||||++||.+|+.++|.- ..--|.+..
T Consensus 11 RP~~F~evvGQe~v~~~L~nal~~~-----------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C 79 (515)
T COG2812 11 RPKTFDDVVGQEHVVKTLSNALENG-----------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC 79 (515)
T ss_pred CcccHHHhcccHHHHHHHHHHHHhC-----------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh
Confidence 4578999999999999999987652 3445679999999999999999999887652 111111111
Q ss_pred -HH-------------HhhhhhHHHHHHHHHHHh----CCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHH
Q 005611 246 -EV-------------LVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLN 307 (688)
Q Consensus 246 -~~-------------~~g~~~~~~r~~f~~A~~----~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 307 (688)
+- -...+-..+|.+.+++.. .++.|.+|||+|.+. ...+|
T Consensus 80 k~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS----------------------~~afN 137 (515)
T COG2812 80 KEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS----------------------KQAFN 137 (515)
T ss_pred HhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh----------------------HHHHH
Confidence 11 111255668888887653 345699999999864 24568
Q ss_pred HHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccC-HHHHHhhCCC
Q 005611 308 QLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKNLPG 386 (688)
Q Consensus 308 ~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~d-l~~la~~t~G 386 (688)
.||..++ +++..|++|.+|..+..+++.+++ |+ .++.+..-+.++....++..+.+.++.-+.+ +..+++...|
T Consensus 138 ALLKTLE--EPP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G 212 (515)
T COG2812 138 ALLKTLE--EPPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG 212 (515)
T ss_pred HHhcccc--cCccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC
Confidence 8998888 567889999999999999999998 74 4777888899999999999998877765444 6777888877
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCccccHHHHHHH
Q 005611 387 WTGARLAQLVQEAALVAVRKGHESILSSDMDDA 419 (688)
Q Consensus 387 ~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~A 419 (688)
|.+|..+++.++..... ..|+.+.+...
T Consensus 213 -s~RDalslLDq~i~~~~----~~It~~~v~~~ 240 (515)
T COG2812 213 -SLRDALSLLDQAIAFGE----GEITLESVRDM 240 (515)
T ss_pred -ChhhHHHHHHHHHHccC----CcccHHHHHHH
Confidence 89999999999886652 44555555443
No 161
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=1.5e-11 Score=141.63 Aligned_cols=206 Identities=22% Similarity=0.284 Sum_probs=139.1
Q ss_pred CCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEE----eeCc---
Q 005611 170 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ----MAGS--- 242 (688)
Q Consensus 170 ~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~----v~~~--- 242 (688)
...+|++++|++.+++.|++.+..- +.+..+||+||+|+|||++|+++|+.+.+.... ..|.
T Consensus 11 RP~~f~~liGq~~i~~~L~~~l~~~-----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~ 79 (620)
T PRK14948 11 RPQRFDELVGQEAIATTLKNALISN-----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCE 79 (620)
T ss_pred CCCcHhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccH
Confidence 4578999999999999998876531 234579999999999999999999998763110 0110
Q ss_pred h-----------hH--HHHhhhhhHHHHHHHHHHHh----CCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHH
Q 005611 243 E-----------FV--EVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETT 305 (688)
Q Consensus 243 ~-----------~~--~~~~g~~~~~~r~~f~~A~~----~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (688)
. +. +.....+...+|.++..+.. ....|++|||+|.+.. ..
T Consensus 80 ~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~----------------------~a 137 (620)
T PRK14948 80 LCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST----------------------AA 137 (620)
T ss_pred HHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH----------------------HH
Confidence 0 00 00112344577888877643 2346999999998642 23
Q ss_pred HHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCC-ccCHHHHHhhC
Q 005611 306 LNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLSSYAKNL 384 (688)
Q Consensus 306 l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~-~~dl~~la~~t 384 (688)
.+.|+..++. ....+++|.+|++++.+.+.+++ |+ ..++|+.++.++....++..+.+.+..- +..+..+++.+
T Consensus 138 ~naLLK~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s 212 (620)
T PRK14948 138 FNALLKTLEE--PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRS 212 (620)
T ss_pred HHHHHHHHhc--CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 4777888873 44567777777888888889987 75 5788988988888877777666544332 22366777777
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHH
Q 005611 385 PGWTGARLAQLVQEAALVAVRKGHESILSSDMDDA 419 (688)
Q Consensus 385 ~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~A 419 (688)
.| +.+++.++++...... ..|+.+++.+.
T Consensus 213 ~G-~lr~A~~lLeklsL~~-----~~It~e~V~~l 241 (620)
T PRK14948 213 QG-GLRDAESLLDQLSLLP-----GPITPEAVWDL 241 (620)
T ss_pred CC-CHHHHHHHHHHHHhcc-----CCCCHHHHHHH
Confidence 66 6777777777643321 24666665543
No 162
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.37 E-value=1.2e-12 Score=155.07 Aligned_cols=159 Identities=20% Similarity=0.276 Sum_probs=101.4
Q ss_pred HHHHhcCCCCccccccccccccccc---cccccccCCCCcccccc-cccHHH--HHHHHHHHHHhcChhhhhccCCCCCc
Q 005611 136 RFTLSRRPKNFRKWDLWQGIDFSRS---KAEARVDGSTGVKFSDV-AGIDEA--VEELQELVRYLKNPELFDKMGIKPPH 209 (688)
Q Consensus 136 ~~~~~~~~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~v~f~dV-~G~~~~--k~~L~~ii~~l~~~~~~~~~g~~~~~ 209 (688)
..+..++.+..++++..+.....+. .........+.+.|+|| +-|..- ...|+.+ ++.+++++
T Consensus 312 ~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~-----------sl~i~~G~ 380 (1228)
T KOG0055|consen 312 SAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGV-----------SLKIPSGQ 380 (1228)
T ss_pred HHHhccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCe-----------EEEeCCCC
Confidence 3455566666777766665333222 12233345678899998 444211 1122212 45577888
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---------------------------------------------------------
Q 005611 210 GVLLEGPPGCGKTLVAKAIAGEA--------------------------------------------------------- 232 (688)
Q Consensus 210 gvLL~GppGtGKT~La~alA~~~--------------------------------------------------------- 232 (688)
.+.|+||+||||||+.+.+.+-.
T Consensus 381 ~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~ 460 (1228)
T KOG0055|consen 381 TVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIE 460 (1228)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHH
Confidence 89999999999999999999922
Q ss_pred ------CCCEEEeeCchhHHHHhhh------hhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhH
Q 005611 233 ------GVPFYQMAGSEFVEVLVGV------GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQ 300 (688)
Q Consensus 233 ------~~~~~~v~~~~~~~~~~g~------~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~ 300 (688)
+.+-+..+.++.+++.+|+ |++++|.+++||..++|.||+|||+++.++..
T Consensus 461 ~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~----------------- 523 (1228)
T KOG0055|consen 461 EAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAE----------------- 523 (1228)
T ss_pred HHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHH-----------------
Confidence 1122222233333444444 78999999999999999999999999876543
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEE
Q 005611 301 ERETTLNQLLIELDGFDTGKGVIFLA 326 (688)
Q Consensus 301 ~~~~~l~~LL~~ld~~~~~~~viVIa 326 (688)
.++.+++.| |....+++.+||+
T Consensus 524 -se~~Vq~AL---d~~~~grTTivVa 545 (1228)
T KOG0055|consen 524 -SERVVQEAL---DKASKGRTTIVVA 545 (1228)
T ss_pred -HHHHHHHHH---HHhhcCCeEEEEe
Confidence 344444444 4446667777774
No 163
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.37 E-value=5.7e-12 Score=134.87 Aligned_cols=215 Identities=22% Similarity=0.268 Sum_probs=136.0
Q ss_pred ccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc-------CCCEE--------
Q 005611 173 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-------GVPFY-------- 237 (688)
Q Consensus 173 ~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~-------~~~~~-------- 237 (688)
.|..|+|+++.|..|.-.+ -+ +...+++|.|+||+|||++++++++.. ++++-
T Consensus 2 pf~~ivgq~~~~~al~~~~---~~---------~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNV---ID---------PKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHh---cC---------CCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 4889999999988763321 11 123579999999999999999999866 33221
Q ss_pred E-eeCch---h-------------HHHHhhhhhHH------H------------HHHHHHHHhCCCeEEEEcccchhhhh
Q 005611 238 Q-MAGSE---F-------------VEVLVGVGSAR------I------------RDLFKRAKVNKPSVIFIDEIDALATR 282 (688)
Q Consensus 238 ~-v~~~~---~-------------~~~~~g~~~~~------~------------r~~f~~A~~~~p~IL~LDEiD~l~~~ 282 (688)
. .+|.. + .+.-.|..+.+ + ...+.+ .+..+|||||++.+.+.
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~---A~~GvL~lDEi~~L~~~ 146 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLAR---ANRGILYIDEVNLLEDH 146 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCccee---ccCCEEEecChHhCCHH
Confidence 0 00000 0 00000001111 1 112222 22359999999986543
Q ss_pred hcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCC-----------CCCCcEEEEEecCCCC-cCCccccCCCccceeeec
Q 005611 283 RQGIFKDTTDHLYNAATQERETTLNQLLIELDGF-----------DTGKGVIFLAATNRRD-LLDPALLRPGRFDRKIRI 350 (688)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~-----------~~~~~viVIaaTN~~~-~Ld~aL~r~gRf~~~I~i 350 (688)
. ...|+..|+.- ..+.++++|+++|..+ .++++++. ||..++.+
T Consensus 147 ~----------------------Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l 202 (337)
T TIGR02030 147 L----------------------VDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEI 202 (337)
T ss_pred H----------------------HHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEEC
Confidence 2 13344444311 1234688999988655 68999999 99999999
Q ss_pred cCCCh-hhHHHHHHHHhccC----c----CC-----------------Ccc--------CHHHHHhhCCCCCHHHHHHHH
Q 005611 351 RAPNA-KGRTEILKIHASKV----K----MS-----------------DSV--------DLSSYAKNLPGWTGARLAQLV 396 (688)
Q Consensus 351 ~~Pd~-~eR~~Il~~~l~~~----~----~~-----------------~~~--------dl~~la~~t~G~s~~dL~~lv 396 (688)
+.|+. ++|.+|++...... . .. .++ -+.+++..+..-+.+.-..++
T Consensus 203 ~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~ 282 (337)
T TIGR02030 203 RTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLN 282 (337)
T ss_pred CCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHH
Confidence 99976 88889988743210 0 00 111 033444445444678888899
Q ss_pred HHHHHHHHHhCCccccHHHHHHHHHhhccC
Q 005611 397 QEAALVAVRKGHESILSSDMDDAVDRLTVG 426 (688)
Q Consensus 397 ~~A~~~A~~~~~~~I~~~di~~Al~~~~~g 426 (688)
+-|...|..++++.++.+|+..+..-+...
T Consensus 283 raArA~Aal~GR~~V~~dDv~~~a~~vL~H 312 (337)
T TIGR02030 283 RAAKALAAFEGRTEVTVDDIRRVAVLALRH 312 (337)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999987766543
No 164
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.36 E-value=1.2e-11 Score=133.57 Aligned_cols=175 Identities=30% Similarity=0.445 Sum_probs=121.4
Q ss_pred ccccHHHHHHHHHHHHH-hcChhhhhccC-CCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHH-HHhh-hh
Q 005611 177 VAGIDEAVEELQELVRY-LKNPELFDKMG-IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE-VLVG-VG 252 (688)
Q Consensus 177 V~G~~~~k~~L~~ii~~-l~~~~~~~~~g-~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~-~~~g-~~ 252 (688)
|+|++++++.+...+.. ++......... -..|+++||+||||||||++|+++|+.++.||+.++++++.+ .|+| ..
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~ 96 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 96 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCH
Confidence 79999999999877643 22221111111 113578999999999999999999999999999999988876 4666 33
Q ss_pred hHHHHHHHHHHH--------------------------------------------------------------------
Q 005611 253 SARIRDLFKRAK-------------------------------------------------------------------- 264 (688)
Q Consensus 253 ~~~~r~~f~~A~-------------------------------------------------------------------- 264 (688)
+..++.+|..|.
T Consensus 97 e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 176 (443)
T PRK05201 97 ESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIE 176 (443)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEE
Confidence 444455544440
Q ss_pred ----------------------------------------------------------------------hCCCeEEEEc
Q 005611 265 ----------------------------------------------------------------------VNKPSVIFID 274 (688)
Q Consensus 265 ----------------------------------------------------------------------~~~p~IL~LD 274 (688)
..+-.|||||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiD 256 (443)
T PRK05201 177 VAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFID 256 (443)
T ss_pred ecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEE
Confidence 0123499999
Q ss_pred ccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCC--------CCCCcEEEEEecC----CCCcCCccccCCC
Q 005611 275 EIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF--------DTGKGVIFLAATN----RRDLLDPALLRPG 342 (688)
Q Consensus 275 EiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~--------~~~~~viVIaaTN----~~~~Ld~aL~r~g 342 (688)
|||.++.+.++...+ ...+.+...||..++|- ....++++||+.- .|++|-|.|.-
T Consensus 257 EiDKIa~~~~~~~~D----------vS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G-- 324 (443)
T PRK05201 257 EIDKIAARGGSSGPD----------VSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG-- 324 (443)
T ss_pred cchhhcccCCCCCCC----------CCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--
Confidence 999999765322111 11233445667666653 2235688888753 36667788885
Q ss_pred ccceeeeccCCChhhHHHHHH
Q 005611 343 RFDRKIRIRAPNAKGRTEILK 363 (688)
Q Consensus 343 Rf~~~I~i~~Pd~~eR~~Il~ 363 (688)
||..++.+.+++.++..+||.
T Consensus 325 R~Pi~v~L~~L~~~dL~~ILt 345 (443)
T PRK05201 325 RFPIRVELDALTEEDFVRILT 345 (443)
T ss_pred ccceEEECCCCCHHHHHHHhc
Confidence 999999999999999998883
No 165
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.36 E-value=1.9e-11 Score=143.34 Aligned_cols=165 Identities=24% Similarity=0.359 Sum_probs=113.7
Q ss_pred ccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHH-----HHhhh
Q 005611 177 VAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE-----VLVGV 251 (688)
Q Consensus 177 V~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~-----~~~g~ 251 (688)
|+|++++++.+.+.+...+..-. . .-+|...+||+||||||||++|+++|+.++.+++.++++++.+ .+.|.
T Consensus 460 ViGQ~~ai~~l~~~i~~~~~gl~--~-~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~ 536 (758)
T PRK11034 460 VFGQDKAIEALTEAIKMSRAGLG--H-EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGA 536 (758)
T ss_pred EeCcHHHHHHHHHHHHHHhcccc--C-CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCC
Confidence 69999999999888775322100 0 0133346999999999999999999999999999999988753 23332
Q ss_pred hh----HHHHHHHHHH-HhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCC--C-------
Q 005611 252 GS----ARIRDLFKRA-KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF--D------- 317 (688)
Q Consensus 252 ~~----~~~r~~f~~A-~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~--~------- 317 (688)
.. ......+..+ +.+..+||+|||+|.+.+. ..+.|++.||.- .
T Consensus 537 ~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~----------------------v~~~LLq~ld~G~ltd~~g~~v 594 (758)
T PRK11034 537 PPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPD----------------------VFNLLLQVMDNGTLTDNNGRKA 594 (758)
T ss_pred CCCcccccccchHHHHHHhCCCcEEEeccHhhhhHH----------------------HHHHHHHHHhcCeeecCCCcee
Confidence 11 1111223333 3455689999999996432 335555555421 1
Q ss_pred CCCcEEEEEecCCC-------------------------CcCCccccCCCccceeeeccCCChhhHHHHHHHHhcc
Q 005611 318 TGKGVIFLAATNRR-------------------------DLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASK 368 (688)
Q Consensus 318 ~~~~viVIaaTN~~-------------------------~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~ 368 (688)
.-+++++|+|||.- ..+.|.++. |+|.+|.|++.+.++..+|+...+.+
T Consensus 595 d~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~ 668 (758)
T PRK11034 595 DFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVE 668 (758)
T ss_pred cCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHH
Confidence 11468899999932 125577776 99999999999999999998877653
No 166
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.36 E-value=3.3e-11 Score=139.32 Aligned_cols=218 Identities=22% Similarity=0.301 Sum_probs=132.4
Q ss_pred CcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEee
Q 005611 171 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMA 240 (688)
Q Consensus 171 ~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~----------~~~~~~v~ 240 (688)
.-+|++++|++..++.+.+.+. ...+.+++|+||||||||++|+++++.. +.+|+.++
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVA------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence 5689999999998887654331 1234579999999999999999998755 45788898
Q ss_pred CchhH-------HHHhhhhhH----HHHHHHHH----------HHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhh
Q 005611 241 GSEFV-------EVLVGVGSA----RIRDLFKR----------AKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAAT 299 (688)
Q Consensus 241 ~~~~~-------~~~~g~~~~----~~r~~f~~----------A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~ 299 (688)
|..+. ..+.+.... ..+..++. .......+|||||++.+....+
T Consensus 218 ~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q--------------- 282 (615)
T TIGR02903 218 GTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQ--------------- 282 (615)
T ss_pred chhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHH---------------
Confidence 86541 111221100 11111111 0012345999999988654321
Q ss_pred HHHHHHHHHHHHHh-----------------------cCCCCCCcEEEEEe-cCCCCcCCccccCCCccceeeeccCCCh
Q 005611 300 QERETTLNQLLIEL-----------------------DGFDTGKGVIFLAA-TNRRDLLDPALLRPGRFDRKIRIRAPNA 355 (688)
Q Consensus 300 ~~~~~~l~~LL~~l-----------------------d~~~~~~~viVIaa-TN~~~~Ld~aL~r~gRf~~~I~i~~Pd~ 355 (688)
..+..++..- ..-..+..+++|++ |+.++.+++++++ ||. .+++++++.
T Consensus 283 ----~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~ 355 (615)
T TIGR02903 283 ----NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTP 355 (615)
T ss_pred ----HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCH
Confidence 1122222210 00011233555554 5668889999988 886 678999999
Q ss_pred hhHHHHHHHHhccCcCCCccC-HHHHHhhCCCCCHHHHHHHHHHHHHHHHHh--------CCccccHHHHHHHHHhhc
Q 005611 356 KGRTEILKIHASKVKMSDSVD-LSSYAKNLPGWTGARLAQLVQEAALVAVRK--------GHESILSSDMDDAVDRLT 424 (688)
Q Consensus 356 ~eR~~Il~~~l~~~~~~~~~d-l~~la~~t~G~s~~dL~~lv~~A~~~A~~~--------~~~~I~~~di~~Al~~~~ 424 (688)
+++.+|++..+.+.+..-+.+ +..+++.+. .++...+++..+...+..+ +...|+.+|+++++..-.
T Consensus 356 edi~~Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 356 EDIALIVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCCc
Confidence 999999999987654322222 344444432 5666666666665444222 223689999999987543
No 167
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=1.7e-11 Score=141.45 Aligned_cols=210 Identities=20% Similarity=0.283 Sum_probs=139.8
Q ss_pred CCCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEE---eeC--ch
Q 005611 169 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ---MAG--SE 243 (688)
Q Consensus 169 ~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~---v~~--~~ 243 (688)
....+|+||+|++.+++.|++.+.. -+.++.+||+||+|+|||++|+++|+.+++.... ..| .+
T Consensus 10 yRP~~~~eiiGq~~~~~~L~~~i~~-----------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~ 78 (585)
T PRK14950 10 WRSQTFAELVGQEHVVQTLRNAIAE-----------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCE 78 (585)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCH
Confidence 3467899999999999999877643 1345678999999999999999999987643210 000 00
Q ss_pred hHHHH--------------hhhhhHHHHHHHHHHHh----CCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHH
Q 005611 244 FVEVL--------------VGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETT 305 (688)
Q Consensus 244 ~~~~~--------------~g~~~~~~r~~f~~A~~----~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (688)
....+ ...+...+|.+...+.. ....|+||||+|.+.. ..
T Consensus 79 ~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~----------------------~a 136 (585)
T PRK14950 79 MCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST----------------------AA 136 (585)
T ss_pred HHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH----------------------HH
Confidence 00000 01122345555544332 2356999999988642 22
Q ss_pred HHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCc-cCHHHHHhhC
Q 005611 306 LNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSYAKNL 384 (688)
Q Consensus 306 l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~-~dl~~la~~t 384 (688)
++.|+..++.. ..++++|.+|+..+.+.+.+++ |+ ..++|+.++..+...+++..+.+.++.-+ ..+..++..+
T Consensus 137 ~naLLk~LEep--p~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s 211 (585)
T PRK14950 137 FNALLKTLEEP--PPHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAA 211 (585)
T ss_pred HHHHHHHHhcC--CCCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 46677777643 3455666667777778888887 65 46889999999999988888766554322 2366777777
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHH
Q 005611 385 PGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 421 (688)
Q Consensus 385 ~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al~ 421 (688)
.| +.+++.+.++....+ +...|+.+++...+.
T Consensus 212 ~G-dlr~al~~LekL~~y----~~~~It~e~V~~ll~ 243 (585)
T PRK14950 212 TG-SMRDAENLLQQLATT----YGGEISLSQVQSLLG 243 (585)
T ss_pred CC-CHHHHHHHHHHHHHh----cCCCCCHHHHHHHhc
Confidence 66 888888888875443 235688888776543
No 168
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.33 E-value=3.1e-11 Score=142.89 Aligned_cols=201 Identities=23% Similarity=0.315 Sum_probs=129.9
Q ss_pred cccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHHH-----Hhh
Q 005611 176 DVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV-----LVG 250 (688)
Q Consensus 176 dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~~-----~~g 250 (688)
.|+|++++++.+.+.+...+..- .+ .-+|...++|+||||||||++|+++|+.++.+++.++++++.+. +.|
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~--~~-~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig 531 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGL--GN-PNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIG 531 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCC--CC-CCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhc
Confidence 46888888888877766432110 00 01233458999999999999999999999999999999887652 222
Q ss_pred hh-----hHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCC---------
Q 005611 251 VG-----SARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF--------- 316 (688)
Q Consensus 251 ~~-----~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~--------- 316 (688)
.. ......+....+.+..+||+|||+|.+.+. ..+.|++.+|.-
T Consensus 532 ~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~----------------------~~~~Ll~~ld~g~~~d~~g~~ 589 (731)
T TIGR02639 532 APPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPD----------------------IYNILLQVMDYATLTDNNGRK 589 (731)
T ss_pred CCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHH----------------------HHHHHHHhhccCeeecCCCcc
Confidence 21 111122333444566789999999985432 234555555432
Q ss_pred CCCCcEEEEEecCCCC-------------------------cCCccccCCCccceeeeccCCChhhHHHHHHHHhccCc-
Q 005611 317 DTGKGVIFLAATNRRD-------------------------LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVK- 370 (688)
Q Consensus 317 ~~~~~viVIaaTN~~~-------------------------~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~- 370 (688)
..-+++++|+|||... .+.|.++. |+|.+|.|.+.+.++..+|++..+++..
T Consensus 590 vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~ 667 (731)
T TIGR02639 590 ADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSK 667 (731)
T ss_pred cCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 1124578999998632 14566666 9999999999999999999988775421
Q ss_pred ------CCCcc---CHHHHHhh--CCCCCHHHHHHHHHHHHHHH
Q 005611 371 ------MSDSV---DLSSYAKN--LPGWTGARLAQLVQEAALVA 403 (688)
Q Consensus 371 ------~~~~~---dl~~la~~--t~G~s~~dL~~lv~~A~~~A 403 (688)
+.-.+ .+..++.. .+.+..+.|+.+++.-....
T Consensus 668 ~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~ 711 (731)
T TIGR02639 668 QLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKP 711 (731)
T ss_pred HHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHH
Confidence 11111 14445553 34455677777776655444
No 169
>PRK09087 hypothetical protein; Validated
Probab=99.32 E-value=1.4e-11 Score=125.25 Aligned_cols=172 Identities=14% Similarity=0.156 Sum_probs=116.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCcc
Q 005611 209 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFK 288 (688)
Q Consensus 209 ~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~ 288 (688)
..++|+||+|+|||+|++++++..+..+ ++..++..... .... . .+|+|||++.+...
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~--i~~~~~~~~~~-----------~~~~-~--~~l~iDDi~~~~~~------ 102 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALL--IHPNEIGSDAA-----------NAAA-E--GPVLIEDIDAGGFD------ 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEE--ecHHHcchHHH-----------Hhhh-c--CeEEEECCCCCCCC------
Confidence 3589999999999999999998876553 33333322211 1111 1 37999999975211
Q ss_pred CcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCc---CCccccCCCccc--eeeeccCCChhhHHHHHH
Q 005611 289 DTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDL---LDPALLRPGRFD--RKIRIRAPNAKGRTEILK 363 (688)
Q Consensus 289 ~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~---Ld~aL~r~gRf~--~~I~i~~Pd~~eR~~Il~ 363 (688)
..+.-.++|.+ ...++.+||+++..|.. ..+.+++ |+. .++++++|+.++|.++++
T Consensus 103 ----------~~~lf~l~n~~-------~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 103 ----------ETGLFHLINSV-------RQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred ----------HHHHHHHHHHH-------HhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHH
Confidence 11222233332 23345577766665553 3677888 774 799999999999999999
Q ss_pred HHhccCcCCCc-cCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHhh
Q 005611 364 IHASKVKMSDS-VDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRL 423 (688)
Q Consensus 364 ~~l~~~~~~~~-~dl~~la~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al~~~ 423 (688)
.+++...+.-+ ..+..++++..+ +.+.+..+++.....+...+ +.||...+++++...
T Consensus 164 ~~~~~~~~~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~~-~~it~~~~~~~l~~~ 222 (226)
T PRK09087 164 KLFADRQLYVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALERK-SRITRALAAEVLNEM 222 (226)
T ss_pred HHHHHcCCCCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHhh
Confidence 99977655432 237778888776 78888888887776665544 568999999988764
No 170
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.31 E-value=8.2e-12 Score=156.77 Aligned_cols=112 Identities=14% Similarity=0.207 Sum_probs=74.3
Q ss_pred ccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccc-ccccccCCCCcccccc-cccHHH--
Q 005611 108 FYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRSK-AEARVDGSTGVKFSDV-AGIDEA-- 183 (688)
Q Consensus 108 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~v~f~dV-~G~~~~-- 183 (688)
.+|.|++.+++.+.......+..+...+..++++..+..|++++++........ .....+....+.|++| +.|+..
T Consensus 318 ~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~ 397 (1466)
T PTZ00265 318 DFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENNDDGKKLKDIKKIQFKNVRFHYDTRKD 397 (1466)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCccCCCCCcEEEEEEEEEcCCCCC
Confidence 467788887777665555555555556677788888889998887753321111 1011112236888888 555421
Q ss_pred HHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHH
Q 005611 184 VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 230 (688)
Q Consensus 184 k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~ 230 (688)
+..|+++ ++.+++++.+.|+||+|+|||||++.+++
T Consensus 398 ~~vL~~i-----------sl~i~~Ge~vaIvG~SGsGKSTLl~lL~g 433 (1466)
T PTZ00265 398 VEIYKDL-----------NFTLTEGKTYAFVGESGCGKSTILKLIER 433 (1466)
T ss_pred Cceeccc-----------eEEEcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 1123332 56678888999999999999999999998
No 171
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.31 E-value=1.2e-11 Score=156.56 Aligned_cols=114 Identities=13% Similarity=0.045 Sum_probs=86.5
Q ss_pred ccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccc---cccccc--ccCCCCcccccc-cc
Q 005611 106 YEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSR---SKAEAR--VDGSTGVKFSDV-AG 179 (688)
Q Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~---~~~~~~--~~~~~~v~f~dV-~G 179 (688)
.+.++.|.+.+++.|...+..|+..++..+..+.....+..|+.++.+...... ...... -+..+.+.|+|| +.
T Consensus 1214 ~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~ 1293 (1522)
T TIGR00957 1214 RHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLR 1293 (1522)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEE
Confidence 577999999999999999999999999999999999999999988875432211 111111 123457999999 66
Q ss_pred cHHH-HHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHH
Q 005611 180 IDEA-VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 230 (688)
Q Consensus 180 ~~~~-k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~ 230 (688)
|++. ...|+++ ++.++++..+.|+|++|+|||||++++.+
T Consensus 1294 Y~~~~~~vL~~i-----------s~~I~~GekiaIVGrTGsGKSTL~~lL~r 1334 (1522)
T TIGR00957 1294 YREDLDLVLRHI-----------NVTIHGGEKVGIVGRTGAGKSSLTLGLFR 1334 (1522)
T ss_pred eCCCCcccccce-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 6432 1223332 66788999999999999999999999998
No 172
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.30 E-value=6.4e-12 Score=132.43 Aligned_cols=204 Identities=15% Similarity=0.133 Sum_probs=129.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHHH--Hhhhhh------H----HHHHHHHHHHhCCCeEEEEc
Q 005611 207 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV--LVGVGS------A----RIRDLFKRAKVNKPSVIFID 274 (688)
Q Consensus 207 ~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~~--~~g~~~------~----~~r~~f~~A~~~~p~IL~LD 274 (688)
.+++++|.||||||||++++.+|+.++.+++.++++..... ++|... . -....+..|. ..++++++|
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illlD 141 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCFD 141 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEec
Confidence 34579999999999999999999999999999988765544 344311 1 1122344554 356799999
Q ss_pred ccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHH-----hc----CCCCCCcEEEEEecCCCC------------c
Q 005611 275 EIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIE-----LD----GFDTGKGVIFLAATNRRD------------L 333 (688)
Q Consensus 275 EiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~-----ld----~~~~~~~viVIaaTN~~~------------~ 333 (688)
|+|..-+ .....++.+|+. +. .+.....+.||||+|..+ .
T Consensus 142 Ein~a~p-------------------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~ 202 (327)
T TIGR01650 142 EYDAGRP-------------------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQ 202 (327)
T ss_pred hhhccCH-------------------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeec
Confidence 9998532 233445556552 11 112345789999999854 3
Q ss_pred CCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCcc----CHHHHHhh----------CCCCCHHHHHHHHHHH
Q 005611 334 LDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV----DLSSYAKN----------LPGWTGARLAQLVQEA 399 (688)
Q Consensus 334 Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~----dl~~la~~----------t~G~s~~dL~~lv~~A 399 (688)
+++++++ ||-.++.+..|+.++-.+|+...........+. .+.++|.. ..+.|+|.+..+.+.+
T Consensus 203 l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~la~~tR~~~~~~~i~~~~SpR~li~w~~~~ 280 (327)
T TIGR01650 203 INQAQMD--RWSIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRVADMTRNAFINGDISTVMSPRTVITWAENA 280 (327)
T ss_pred CCHHHHh--heeeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhccCCccccccHHHHHHHHHHH
Confidence 6889998 999899999999999999998765432210000 12223322 2345777777776655
Q ss_pred HHHHHHhCCccccHHHHHHHHHhhccCCCccCccccCCcchhHHHHHHHHH
Q 005611 400 ALVAVRKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVA 450 (688)
Q Consensus 400 ~~~A~~~~~~~I~~~di~~Al~~~~~g~~~~~~~~~~~~~~~ia~hE~GhA 450 (688)
... + .++..|++...... -++..+.++||.-..
T Consensus 281 ~~f----~------~~~~~a~~~~~~n~--------~~~~er~~~~e~~q~ 313 (327)
T TIGR01650 281 EIF----D------HDIALAFRLTFLNK--------CDELERPTVAEFFQR 313 (327)
T ss_pred Hhh----C------ccHHHHHHHHHHhc--------CCHHHHHHHHHHHHH
Confidence 433 1 25666666554321 123345566664433
No 173
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.30 E-value=1e-10 Score=121.43 Aligned_cols=100 Identities=24% Similarity=0.241 Sum_probs=78.2
Q ss_pred EEEEEecCC------------CCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCcc-CHHHHHhhCCCCC
Q 005611 322 VIFLAATNR------------RDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV-DLSSYAKNLPGWT 388 (688)
Q Consensus 322 viVIaaTN~------------~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~-dl~~la~~t~G~s 388 (688)
-++|.|||+ |.-+|..|++ |. ..|...+++.++.++|++..+....+.-+. .++.|+..-..-|
T Consensus 321 PIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etS 397 (450)
T COG1224 321 PIIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETS 397 (450)
T ss_pred cEEEEEcCCceeeecccCCcCCCCCCHhhhh--he-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhh
Confidence 366777886 3446777776 54 477888999999999999999776554332 3677777766667
Q ss_pred HHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHhhc
Q 005611 389 GARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLT 424 (688)
Q Consensus 389 ~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al~~~~ 424 (688)
-+-..+|+.-|...|.++++..|..+|+++|.+-..
T Consensus 398 LRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~lF~ 433 (450)
T COG1224 398 LRYAVQLLTPASIIAKRRGSKRVEVEDVERAKELFL 433 (450)
T ss_pred HHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHHHh
Confidence 888889999999999999999999999999976554
No 174
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.30 E-value=3.4e-11 Score=111.91 Aligned_cols=124 Identities=43% Similarity=0.615 Sum_probs=82.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhHHHHhhhhhHH---HHHHHHHHHhCCCeEEEEcccchhh
Q 005611 207 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGVGSAR---IRDLFKRAKVNKPSVIFIDEIDALA 280 (688)
Q Consensus 207 ~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~~~~~g~~~~~---~r~~f~~A~~~~p~IL~LDEiD~l~ 280 (688)
.+..++++||||||||++++.+++.+ +.+++.+++.+............ ....+..+....+++|++||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 45679999999999999999999998 88999999887765543322221 2223344455678999999999862
Q ss_pred hhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCC-CCCCcEEEEEecCCCC--cCCccccCCCccceeeecc
Q 005611 281 TRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF-DTGKGVIFLAATNRRD--LLDPALLRPGRFDRKIRIR 351 (688)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~-~~~~~viVIaaTN~~~--~Ld~aL~r~gRf~~~I~i~ 351 (688)
.. ....+..++...... ....++.+|+++|... .+++.+.+ ||+.+++++
T Consensus 98 ~~-------------------~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 98 RG-------------------AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred HH-------------------HHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 21 111122222222110 1246788888998877 67777777 888777765
No 175
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=1.2e-10 Score=134.39 Aligned_cols=203 Identities=21% Similarity=0.306 Sum_probs=141.2
Q ss_pred CCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC--------------
Q 005611 170 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------------- 235 (688)
Q Consensus 170 ~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~-------------- 235 (688)
.+.+|++|+|++.+++.|.+.+.. -+.++.+||+||+|+|||++|+.+|+.+.+.
T Consensus 12 RP~~f~~viGq~~~~~~L~~~i~~-----------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 12 RPSTFESVVGQEALTTTLKNAIAT-----------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 457899999999999998887642 2456679999999999999999999987642
Q ss_pred -----------EEEeeCchhHHHHhhhhhHHHHHHHHHHHhC----CCeEEEEcccchhhhhhcCCccCcchhhhhhhhH
Q 005611 236 -----------FYQMAGSEFVEVLVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQ 300 (688)
Q Consensus 236 -----------~~~v~~~~~~~~~~g~~~~~~r~~f~~A~~~----~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~ 300 (688)
++.+++.+ ..+...++.++..+... ...|++|||+|.+...
T Consensus 81 C~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~------------------ 136 (614)
T PRK14971 81 CVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQA------------------ 136 (614)
T ss_pred HHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHH------------------
Confidence 11221110 01234566666655422 2459999999986422
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCcc-CHHH
Q 005611 301 ERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV-DLSS 379 (688)
Q Consensus 301 ~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~-dl~~ 379 (688)
..+.|+..|+. .+.++++|.+|+.+..+-+.+++ |+ ..++|.+++.++....++..+.+.++..+. .+..
T Consensus 137 ----a~naLLK~LEe--pp~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~ 207 (614)
T PRK14971 137 ----AFNAFLKTLEE--PPSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNV 207 (614)
T ss_pred ----HHHHHHHHHhC--CCCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 23677777774 33456666677777888889988 64 579999999999999998888776655333 3677
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHH
Q 005611 380 YAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 421 (688)
Q Consensus 380 la~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al~ 421 (688)
++..+.| +.+++.+.+......+ +.. |+.+++.+.+.
T Consensus 208 La~~s~g-dlr~al~~Lekl~~y~---~~~-It~~~V~~~l~ 244 (614)
T PRK14971 208 IAQKADG-GMRDALSIFDQVVSFT---GGN-ITYKSVIENLN 244 (614)
T ss_pred HHHHcCC-CHHHHHHHHHHHHHhc---cCC-ccHHHHHHHhC
Confidence 7777755 7888888877766554 222 77766665543
No 176
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.28 E-value=6.6e-11 Score=132.98 Aligned_cols=213 Identities=22% Similarity=0.284 Sum_probs=131.8
Q ss_pred CcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc------------------
Q 005611 171 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA------------------ 232 (688)
Q Consensus 171 ~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~------------------ 232 (688)
..+|+||.|++.+++.+.-. +..+.+++|.||||||||++++.+++.+
T Consensus 188 ~~d~~dv~Gq~~~~~al~~a--------------a~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIA--------------AAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhh--------------ccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 35899999999887666332 3456789999999999999999998632
Q ss_pred ----------CCCEEEeeCchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHH
Q 005611 233 ----------GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQER 302 (688)
Q Consensus 233 ----------~~~~~~v~~~~~~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~ 302 (688)
..||....++......+|.+.......+..|. ..+|||||++.+... .
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~---~GvLfLDEi~e~~~~-------------------~ 311 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAH---NGVLFLDELPEFKRS-------------------V 311 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhccC---CCeEecCChhhCCHH-------------------H
Confidence 12333333332222233322212223444443 359999999885432 2
Q ss_pred HHHHHHHHHHhc----C----CCCCCcEEEEEecCCC------C-----------------cCCccccCCCccceeeecc
Q 005611 303 ETTLNQLLIELD----G----FDTGKGVIFLAATNRR------D-----------------LLDPALLRPGRFDRKIRIR 351 (688)
Q Consensus 303 ~~~l~~LL~~ld----~----~~~~~~viVIaaTN~~------~-----------------~Ld~aL~r~gRf~~~I~i~ 351 (688)
...+.+.++.-. . ...+.++.+|+++|.- + .+...|++ |||.++.++
T Consensus 312 ~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~ 389 (499)
T TIGR00368 312 LDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVP 389 (499)
T ss_pred HHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEc
Confidence 223333332210 0 0113468999999962 1 47778888 999999999
Q ss_pred CCChhh-------------HHHHHHH------HhccC---cCCCccC----------------HHHHHhhCCCCCHHHHH
Q 005611 352 APNAKG-------------RTEILKI------HASKV---KMSDSVD----------------LSSYAKNLPGWTGARLA 393 (688)
Q Consensus 352 ~Pd~~e-------------R~~Il~~------~l~~~---~~~~~~d----------------l~~la~~t~G~s~~dL~ 393 (688)
.++.++ |.++.+. .++.. .....+. +-.-+....++|.+...
T Consensus 390 ~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~ 469 (499)
T TIGR00368 390 LLPPEKLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATH 469 (499)
T ss_pred CCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHH
Confidence 775432 2223221 11111 1111111 11112223468999999
Q ss_pred HHHHHHHHHHHHhCCccccHHHHHHHHH
Q 005611 394 QLVQEAALVAVRKGHESILSSDMDDAVD 421 (688)
Q Consensus 394 ~lv~~A~~~A~~~~~~~I~~~di~~Al~ 421 (688)
.+++-|...|..++++.|+.+|+.+|+.
T Consensus 470 rilrvArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 470 RILKVARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHh
Confidence 9999999999999999999999999974
No 177
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.25 E-value=5.6e-11 Score=130.22 Aligned_cols=250 Identities=25% Similarity=0.353 Sum_probs=151.4
Q ss_pred CCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhHH
Q 005611 170 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE 246 (688)
Q Consensus 170 ~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~~ 246 (688)
...+|+||+|..+...++.+.++.+ .+.+.+|||.|++||||..+|+++.+.. +-||+.+||..+.+
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr~----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKRI----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHhh----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 4568999999998888877776543 3455689999999999999999998755 78999999987766
Q ss_pred HHhhh-----------hhHH--HHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHh
Q 005611 247 VLVGV-----------GSAR--IRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIEL 313 (688)
Q Consensus 247 ~~~g~-----------~~~~--~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~l 313 (688)
..... |+.+ -...|+.|... -||||||..+. ...+.-+-..|++-
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgemp-------------------l~LQaKLLRVLQEk 367 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEMP-------------------LPLQAKLLRVLQEK 367 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccCC-------------------HHHHHHHHHHHhhc
Confidence 53321 1222 34455555433 79999998753 22233333444431
Q ss_pred --cCCC----CCCcEEEEEecCCCCcCCccccCCCccce-------eeeccCCChhhHHH----HHHHHhcc----CcCC
Q 005611 314 --DGFD----TGKGVIFLAATNRRDLLDPALLRPGRFDR-------KIRIRAPNAKGRTE----ILKIHASK----VKMS 372 (688)
Q Consensus 314 --d~~~----~~~~viVIaaTN~~~~Ld~aL~r~gRf~~-------~I~i~~Pd~~eR~~----Il~~~l~~----~~~~ 372 (688)
..+. .+-.|.||||||+. +-.++. .|+|.. ++.+..|+..+|.+ +..+++.+ .+..
T Consensus 368 ei~rvG~t~~~~vDVRIIAATN~n--L~~~i~-~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~ 444 (560)
T COG3829 368 EIERVGGTKPIPVDVRIIAATNRN--LEKMIA-EGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRN 444 (560)
T ss_pred eEEecCCCCceeeEEEEEeccCcC--HHHHHh-cCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCC
Confidence 1111 13458999999973 111222 234432 67777888888865 33333332 2211
Q ss_pred -CccC---HHHHH-hhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHH-HHHHhhccCCCccCccccCCcchhHHHHH
Q 005611 373 -DSVD---LSSYA-KNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMD-DAVDRLTVGPKRRGIELGNQGQSRRAATE 446 (688)
Q Consensus 373 -~~~d---l~~la-~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~-~Al~~~~~g~~~~~~~~~~~~~~~ia~hE 446 (688)
..+. +..+. -.++| +.++|+|++.++...+ .....|+.+|+. .++......+... ...+......++.+
T Consensus 445 v~~ls~~a~~~L~~y~WPG-NVRELeNviER~v~~~--~~~~~I~~~~lp~~~l~~k~~~~~~~--~~~~~~~l~~~~e~ 519 (560)
T COG3829 445 VKGLSPDALALLLRYDWPG-NVRELENVIERAVNLV--ESDGLIDADDLPAFALEEKEPRPETT--KQIEVGSLKEALEE 519 (560)
T ss_pred cccCCHHHHHHHHhCCCCc-hHHHHHHHHHHHHhcc--CCcceeehhhcchhhhcccccCcCcc--cCcccccHHHHHHH
Confidence 1111 33333 33667 8999999999998754 334458888877 5554432211111 11222233445666
Q ss_pred HHHHHHHHHhhhc
Q 005611 447 VGVAMISHLLRRY 459 (688)
Q Consensus 447 ~GhAvv~~~l~~~ 459 (688)
....++-..|...
T Consensus 520 ~Ek~~I~~aL~~~ 532 (560)
T COG3829 520 YEKHLIREALERH 532 (560)
T ss_pred HHHHHHHHHHHHh
Confidence 6677777777654
No 178
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.24 E-value=5.2e-11 Score=138.49 Aligned_cols=214 Identities=21% Similarity=0.283 Sum_probs=136.3
Q ss_pred ccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc--------------------
Q 005611 173 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-------------------- 232 (688)
Q Consensus 173 ~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~-------------------- 232 (688)
.|.+|+|++.++..|.-.. .++ ...++||.|++|||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~a---v~~---------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNA---VDP---------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHh---hCC---------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 4889999999887764331 111 12469999999999999999999876
Q ss_pred ---------------CCCEEEeeCchhHHHHhhhhh--HH--------HHHHHHHHHhCCCeEEEEcccchhhhhhcCCc
Q 005611 233 ---------------GVPFYQMAGSEFVEVLVGVGS--AR--------IRDLFKRAKVNKPSVIFIDEIDALATRRQGIF 287 (688)
Q Consensus 233 ---------------~~~~~~v~~~~~~~~~~g~~~--~~--------~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~ 287 (688)
..||+.+.++...+.++|... .. ....+..| ...||||||++.+....
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l~~~~---- 142 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLLDDHL---- 142 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhCCHHH----
Confidence 346666655543333333210 00 01112221 22499999999875432
Q ss_pred cCcchhhhhhhhHHHHHHHHHHHHHhcCC-----------CCCCcEEEEEecCCCC-cCCccccCCCccceeeeccCCC-
Q 005611 288 KDTTDHLYNAATQERETTLNQLLIELDGF-----------DTGKGVIFLAATNRRD-LLDPALLRPGRFDRKIRIRAPN- 354 (688)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~~LL~~ld~~-----------~~~~~viVIaaTN~~~-~Ld~aL~r~gRf~~~I~i~~Pd- 354 (688)
.+.|+..|+.- ..+.++.+|+|+|..+ .+.++|+. ||+.++.++.|.
T Consensus 143 ------------------q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~ 202 (633)
T TIGR02442 143 ------------------VDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRD 202 (633)
T ss_pred ------------------HHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCc
Confidence 24555555321 1124589999998643 58889999 999999998775
Q ss_pred hhhHHHHHHHHhccCc-------------------------CCCcc-----CHHHHHhhC--CCC-CHHHHHHHHHHHHH
Q 005611 355 AKGRTEILKIHASKVK-------------------------MSDSV-----DLSSYAKNL--PGW-TGARLAQLVQEAAL 401 (688)
Q Consensus 355 ~~eR~~Il~~~l~~~~-------------------------~~~~~-----dl~~la~~t--~G~-s~~dL~~lv~~A~~ 401 (688)
.+++.++++....... ..+.+ .+..++..+ .|. +.+....+++-|..
T Consensus 203 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara 282 (633)
T TIGR02442 203 PEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARA 282 (633)
T ss_pred hHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Confidence 5677777765322000 00011 112222221 233 46777788999999
Q ss_pred HHHHhCCccccHHHHHHHHHhhcc
Q 005611 402 VAVRKGHESILSSDMDDAVDRLTV 425 (688)
Q Consensus 402 ~A~~~~~~~I~~~di~~Al~~~~~ 425 (688)
.|..++++.|+.+|+..|+.-+..
T Consensus 283 ~AaL~gr~~V~~~Dv~~A~~lvL~ 306 (633)
T TIGR02442 283 LAALDGRRRVTAEDVREAAELVLP 306 (633)
T ss_pred HHHHcCCCcCCHHHHHHHHHHHhh
Confidence 999999999999999999877663
No 179
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.24 E-value=1.6e-10 Score=124.74 Aligned_cols=191 Identities=18% Similarity=0.211 Sum_probs=124.9
Q ss_pred CCCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-------CEEEe--
Q 005611 169 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV-------PFYQM-- 239 (688)
Q Consensus 169 ~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~-------~~~~v-- 239 (688)
..+-.|++|+|++++++.|...+.. -+.|..+||+||+|+|||++|+.+|+.+.+ +....
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~-----------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYRE-----------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHc-----------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 3566899999999999999887542 245668999999999999999999998755 11100
Q ss_pred --eCchhHHHH---------h-------------hhhhHHHHHHHHHHH----hCCCeEEEEcccchhhhhhcCCccCcc
Q 005611 240 --AGSEFVEVL---------V-------------GVGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIFKDTT 291 (688)
Q Consensus 240 --~~~~~~~~~---------~-------------g~~~~~~r~~f~~A~----~~~p~IL~LDEiD~l~~~~~~~~~~~~ 291 (688)
.|....... + ..+...+|.+..... .....|++|||+|.+...
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~--------- 156 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRN--------- 156 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHH---------
Confidence 111110000 0 001233444433322 234569999999987432
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcC
Q 005611 292 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKM 371 (688)
Q Consensus 292 ~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~ 371 (688)
..|.||..++. .+.++++|..|+.++.+.|.+++ |+ ..+++++|+.++..++++......++
T Consensus 157 -------------aanaLLk~LEE--pp~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~ 218 (351)
T PRK09112 157 -------------AANAILKTLEE--PPARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGS 218 (351)
T ss_pred -------------HHHHHHHHHhc--CCCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCC
Confidence 23678888875 33445555557778888899988 87 69999999999999999874322221
Q ss_pred CCccCHHHHHhhCCCCCHHHHHHHHHHH
Q 005611 372 SDSVDLSSYAKNLPGWTGARLAQLVQEA 399 (688)
Q Consensus 372 ~~~~dl~~la~~t~G~s~~dL~~lv~~A 399 (688)
. +..+..+++.+.| +++...++++..
T Consensus 219 ~-~~~~~~i~~~s~G-~pr~Al~ll~~~ 244 (351)
T PRK09112 219 D-GEITEALLQRSKG-SVRKALLLLNYG 244 (351)
T ss_pred C-HHHHHHHHHHcCC-CHHHHHHHHhcC
Confidence 1 2225566666666 777766666543
No 180
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=3.7e-11 Score=132.90 Aligned_cols=205 Identities=13% Similarity=0.148 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhhhhhccCCcccceec-cccChhhHHHHHHHHHHHHHHHHH
Q 005611 52 FAVTSFIFVTTVYVVWPIARPFVNIFRGLILGIIENISDYIVDLSGEGGILSKFY-EFYTFGGLSASLEMLKPITLVILT 130 (688)
Q Consensus 52 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~ 130 (688)
|--.+.-..-+...-+-++.++.+++++++..|- ++.... |.+|+.....++...--+..|+..
T Consensus 212 fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~---------------g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~ 276 (559)
T COG4988 212 FRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYI---------------GFRLLGEGDLTLFAGLFVLILAPEFFQPLRD 276 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHccCCccHHHHHHHHHHhHHHHHHHHH
Confidence 3334444444444555677888888888777776 555555 799998888888888899999999
Q ss_pred HHHHHHHHHhcCCCCccccccccccccccc-ccc--ccccCCCCcccccc-cccHHHHHHHHHHHHHhcChhhhhccCCC
Q 005611 131 MVLLIRFTLSRRPKNFRKWDLWQGIDFSRS-KAE--ARVDGSTGVKFSDV-AGIDEAVEELQELVRYLKNPELFDKMGIK 206 (688)
Q Consensus 131 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-~~~--~~~~~~~~v~f~dV-~G~~~~k~~L~~ii~~l~~~~~~~~~g~~ 206 (688)
++..+-....+.++...+..+++....... +.+ ........++++++ +.+++-+..+.++ ++.++
T Consensus 277 lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g~~~l~~l-----------~~t~~ 345 (559)
T COG4988 277 LGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPALSDL-----------NLTIK 345 (559)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCCCcccCCc-----------eeEec
Confidence 999998888888888888888776443322 221 22222334445576 5554433333333 66688
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcC------------------------------CCEE------------EeeC---
Q 005611 207 PPHGVLLEGPPGCGKTLVAKAIAGEAG------------------------------VPFY------------QMAG--- 241 (688)
Q Consensus 207 ~~~gvLL~GppGtGKT~La~alA~~~~------------------------------~~~~------------~v~~--- 241 (688)
+++.+.|+|++|+|||||++++++.+. -|++ ..+.
T Consensus 346 ~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e 425 (559)
T COG4988 346 AGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDE 425 (559)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHH
Confidence 889999999999999999999998321 0100 0000
Q ss_pred -----------------chhHHHHhhh------hhHHHHHHHHHHHhCCCeEEEEcccchhhhh
Q 005611 242 -----------------SEFVEVLVGV------GSARIRDLFKRAKVNKPSVIFIDEIDALATR 282 (688)
Q Consensus 242 -----------------~~~~~~~~g~------~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~ 282 (688)
++..++..|+ +++++|..++||..++++++++||.++-.+.
T Consensus 426 ~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~ 489 (559)
T COG4988 426 EIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDA 489 (559)
T ss_pred HHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCH
Confidence 1122223333 6789999999999999999999999985543
No 181
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.23 E-value=1.2e-11 Score=142.30 Aligned_cols=165 Identities=18% Similarity=0.104 Sum_probs=112.9
Q ss_pred cccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccccc--c---cccc-----ccccCCCCccccc
Q 005611 107 EFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFS--R---SKAE-----ARVDGSTGVKFSD 176 (688)
Q Consensus 107 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--~---~~~~-----~~~~~~~~v~f~d 176 (688)
+.+|.|++++|+.|+..+..|+..+...+..+++...+..|+.++++..+.. . .... ........++|++
T Consensus 263 ~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (555)
T TIGR01194 263 ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKD 342 (555)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEE
Confidence 6889999999999999999999999999999999999999998886531110 0 0000 0011234688888
Q ss_pred c-cccHHH----HHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-----------------
Q 005611 177 V-AGIDEA----VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV----------------- 234 (688)
Q Consensus 177 V-~G~~~~----k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~----------------- 234 (688)
| +.|++. +..|+++ ++.++++..+.|+||+|+|||||++.+++....
T Consensus 343 v~f~y~~~~~~~~~~l~~v-----------s~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~ 411 (555)
T TIGR01194 343 VHMNPKAPEGSEGFALGPI-----------DLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSR 411 (555)
T ss_pred EEEEeCCCCCCcCceeccc-----------eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH
Confidence 8 555421 1123222 566788889999999999999999999983310
Q ss_pred -------CEEEe-----------eC-c-----hhH---HH-----Hh------------hhhhHHHHHHHHHHHhCCCeE
Q 005611 235 -------PFYQM-----------AG-S-----EFV---EV-----LV------------GVGSARIRDLFKRAKVNKPSV 270 (688)
Q Consensus 235 -------~~~~v-----------~~-~-----~~~---~~-----~~------------g~~~~~~r~~f~~A~~~~p~I 270 (688)
.++.- +. . +.. +. ++ =.+++++|..++||...+|+|
T Consensus 412 ~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~i 491 (555)
T TIGR01194 412 DDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPI 491 (555)
T ss_pred HHHHhhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 00000 00 0 000 00 00 016789999999999999999
Q ss_pred EEEcccchhhhh
Q 005611 271 IFIDEIDALATR 282 (688)
Q Consensus 271 L~LDEiD~l~~~ 282 (688)
+++||.++-.+.
T Consensus 492 lilDE~ts~LD~ 503 (555)
T TIGR01194 492 LLFDEWAADQDP 503 (555)
T ss_pred EEEeCCccCCCH
Confidence 999999986544
No 182
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.23 E-value=3e-10 Score=118.53 Aligned_cols=191 Identities=13% Similarity=0.204 Sum_probs=118.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCC-CEEE---ee----CchhHHHH---hhhh---h------HHHHHHH-HHHHhCC
Q 005611 209 HGVLLEGPPGCGKTLVAKAIAGEAGV-PFYQ---MA----GSEFVEVL---VGVG---S------ARIRDLF-KRAKVNK 267 (688)
Q Consensus 209 ~gvLL~GppGtGKT~La~alA~~~~~-~~~~---v~----~~~~~~~~---~g~~---~------~~~r~~f-~~A~~~~ 267 (688)
..++|+||+|+|||++++.+++.+.. .+.. ++ ..++.... .|.. . ..+...+ .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35889999999999999999998752 2221 11 11222111 1111 0 1112212 2234567
Q ss_pred CeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCC---cCC----ccccC
Q 005611 268 PSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRD---LLD----PALLR 340 (688)
Q Consensus 268 p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~---~Ld----~aL~r 340 (688)
+.+|+|||++.+... ....+..+... .. .....+.|+.+ ..++ .+. ..+.+
T Consensus 124 ~~vliiDe~~~l~~~-------------------~~~~l~~l~~~-~~-~~~~~~~vvl~-g~~~~~~~l~~~~~~~l~~ 181 (269)
T TIGR03015 124 RALLVVDEAQNLTPE-------------------LLEELRMLSNF-QT-DNAKLLQIFLV-GQPEFRETLQSPQLQQLRQ 181 (269)
T ss_pred CeEEEEECcccCCHH-------------------HHHHHHHHhCc-cc-CCCCeEEEEEc-CCHHHHHHHcCchhHHHHh
Confidence 789999999986421 11122222111 11 11222333333 2222 221 12444
Q ss_pred CCccceeeeccCCChhhHHHHHHHHhccCcCC-----CccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHH
Q 005611 341 PGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-----DSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSD 415 (688)
Q Consensus 341 ~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~-----~~~dl~~la~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~d 415 (688)
|+...+++++.+.++..+++...+...+.. .+..+..+.+.+.| .++.+..+|+.+...|..++.+.|+.++
T Consensus 182 --r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G-~p~~i~~l~~~~~~~a~~~~~~~i~~~~ 258 (269)
T TIGR03015 182 --RIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRG-IPRLINILCDRLLLSAFLEEKREIGGEE 258 (269)
T ss_pred --heeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence 777789999999999999999888654321 22347778888988 4788999999999999999999999999
Q ss_pred HHHHHHhhc
Q 005611 416 MDDAVDRLT 424 (688)
Q Consensus 416 i~~Al~~~~ 424 (688)
++.++..+.
T Consensus 259 v~~~~~~~~ 267 (269)
T TIGR03015 259 VREVIAEID 267 (269)
T ss_pred HHHHHHHhh
Confidence 999988653
No 183
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.21 E-value=4.9e-10 Score=121.34 Aligned_cols=201 Identities=25% Similarity=0.353 Sum_probs=127.6
Q ss_pred CCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhHH
Q 005611 170 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE 246 (688)
Q Consensus 170 ~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~~ 246 (688)
....+.+++|..+++.++.+.++.+.. ...+|||.|++||||..+|++|-+.. +.||+.+||+.+.+
T Consensus 218 ~~~~~~~iIG~S~am~~ll~~i~~VA~----------Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 218 VVLEVGGIIGRSPAMRQLLKEIEVVAK----------SDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hhcccccceecCHHHHHHHHHHHHHhc----------CCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 367888999999999999888876543 34579999999999999999998755 67999999998876
Q ss_pred HHhhh-hhHHHHHHHHHHHhC--------CCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHH--hcC
Q 005611 247 VLVGV-GSARIRDLFKRAKVN--------KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIE--LDG 315 (688)
Q Consensus 247 ~~~g~-~~~~~r~~f~~A~~~--------~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~--ld~ 315 (688)
..... --...+.+|.-|... +-.-||||||..+.-. .+.-+-..|++ ++.
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~-------------------lQaKLLRvLQegEieR 348 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPLA-------------------LQAKLLRVLQEGEIER 348 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCCCeEechhhccCCHH-------------------HHHHHHHHHhhcceee
Confidence 64321 111123333333221 2348999999875432 22223333332 344
Q ss_pred CCCCC----cEEEEEecCCCCcCCccccCCCccce-------eeeccCCChhhHHH----HHHHHhcc----CcC-CCcc
Q 005611 316 FDTGK----GVIFLAATNRRDLLDPALLRPGRFDR-------KIRIRAPNAKGRTE----ILKIHASK----VKM-SDSV 375 (688)
Q Consensus 316 ~~~~~----~viVIaaTN~~~~Ld~aL~r~gRf~~-------~I~i~~Pd~~eR~~----Il~~~l~~----~~~-~~~~ 375 (688)
+..++ .|-||||||+ +|-..++. |+|.. ++.+..|...+|.+ +.++++.+ .+. ...+
T Consensus 349 vG~~r~ikVDVRiIAATNR--DL~~~V~~-G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~l 425 (550)
T COG3604 349 VGGDRTIKVDVRVIAATNR--DLEEMVRD-GEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSL 425 (550)
T ss_pred cCCCceeEEEEEEEeccch--hHHHHHHc-CcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCccccc
Confidence 43333 4889999997 22223322 44432 56667788888764 23333333 222 1112
Q ss_pred C---HHHHHhh-CCCCCHHHHHHHHHHHHHHH
Q 005611 376 D---LSSYAKN-LPGWTGARLAQLVQEAALVA 403 (688)
Q Consensus 376 d---l~~la~~-t~G~s~~dL~~lv~~A~~~A 403 (688)
+ ++.+... .+| +.++|++++++|+..|
T Consensus 426 s~~Al~~L~~y~wPG-NVRELen~veRavlla 456 (550)
T COG3604 426 SAEALELLSSYEWPG-NVRELENVVERAVLLA 456 (550)
T ss_pred CHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHh
Confidence 2 3444443 445 8999999999999988
No 184
>PLN03232 ABC transporter C family member; Provisional
Probab=99.21 E-value=6.3e-11 Score=149.97 Aligned_cols=171 Identities=16% Similarity=0.119 Sum_probs=120.1
Q ss_pred ccceeccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccccCCCCcccccc-cc
Q 005611 101 ILSKFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRSKAEARVDGSTGVKFSDV-AG 179 (688)
Q Consensus 101 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~f~dV-~G 179 (688)
.+.+.++.+|.|.+.+++.++..+..|+..+...+..+..+..+..|+.++++..+...............+.|+|+ +.
T Consensus 544 ~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~~~~~~~~~I~~~~vsF~ 623 (1495)
T PLN03232 544 VFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNPPLQPGAPAISIKNGYFS 623 (1495)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccCCcCCCCCcEEEEeeEEE
Confidence 66677889999999999999999999999999999999999999999988876533211110011112235788887 55
Q ss_pred cHHH--HHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC----------EEEe-------e
Q 005611 180 IDEA--VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP----------FYQM-------A 240 (688)
Q Consensus 180 ~~~~--k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~----------~~~v-------~ 240 (688)
++.. +..|+++ ++.+++++.+.++||+|+|||||++++.++.... +-++ +
T Consensus 624 y~~~~~~~vL~~i-----------nl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~ 692 (1495)
T PLN03232 624 WDSKTSKPTLSDI-----------NLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFN 692 (1495)
T ss_pred cCCCCCCceeeee-----------EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCcccccc
Confidence 5421 1112222 5567788889999999999999999999865210 1111 0
Q ss_pred C-------------chhH--------------------HHHhhh------hhHHHHHHHHHHHhCCCeEEEEcccchhhh
Q 005611 241 G-------------SEFV--------------------EVLVGV------GSARIRDLFKRAKVNKPSVIFIDEIDALAT 281 (688)
Q Consensus 241 ~-------------~~~~--------------------~~~~g~------~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~ 281 (688)
+ .+.+ ++.+|+ |++++|..++||...+|+|++|||..+..+
T Consensus 693 gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD 772 (1495)
T PLN03232 693 ATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALD 772 (1495)
T ss_pred ccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 0 0000 111222 789999999999999999999999998665
Q ss_pred h
Q 005611 282 R 282 (688)
Q Consensus 282 ~ 282 (688)
.
T Consensus 773 ~ 773 (1495)
T PLN03232 773 A 773 (1495)
T ss_pred H
Confidence 4
No 185
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.21 E-value=3.2e-10 Score=124.92 Aligned_cols=211 Identities=17% Similarity=0.174 Sum_probs=125.4
Q ss_pred ccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCC--CEEEeeCc-hhHHHHhhhh-
Q 005611 177 VAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV--PFYQMAGS-EFVEVLVGVG- 252 (688)
Q Consensus 177 V~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~--~~~~v~~~-~~~~~~~g~~- 252 (688)
++|.+++++.+... +..+.++||+||||||||++|++++...+. +|....+. .......|..
T Consensus 22 i~gre~vI~lll~a--------------alag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~ 87 (498)
T PRK13531 22 LYERSHAIRLCLLA--------------ALSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLS 87 (498)
T ss_pred ccCcHHHHHHHHHH--------------HccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHH
Confidence 47777776665443 234568999999999999999999997643 44433322 1112223311
Q ss_pred hHHH--HHHHHHHHhC---CCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCC--C------CC
Q 005611 253 SARI--RDLFKRAKVN---KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF--D------TG 319 (688)
Q Consensus 253 ~~~~--r~~f~~A~~~---~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~--~------~~ 319 (688)
.... ...|.+.... ...+||+|||..+.++ +.+.|+..|+.- . +-
T Consensus 88 i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp~----------------------~QsaLLeam~Er~~t~g~~~~~l 145 (498)
T PRK13531 88 IQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGPA----------------------ILNTLLTAINERRFRNGAHEEKI 145 (498)
T ss_pred HhhhhhcCchhhhcCCccccccEEeecccccCCHH----------------------HHHHHHHHHHhCeEecCCeEEeC
Confidence 1111 1223222211 2349999999865433 235566655211 0 01
Q ss_pred CcEEEEEecCCCC---cCCccccCCCccceeeeccCCC-hhhHHHHHHHHhcc--CcCC--CccC---------------
Q 005611 320 KGVIFLAATNRRD---LLDPALLRPGRFDRKIRIRAPN-AKGRTEILKIHASK--VKMS--DSVD--------------- 376 (688)
Q Consensus 320 ~~viVIaaTN~~~---~Ld~aL~r~gRf~~~I~i~~Pd-~~eR~~Il~~~l~~--~~~~--~~~d--------------- 376 (688)
+..++++|||... ...+++.. ||-..+.+|+|+ .++..+++...... .... ..++
T Consensus 146 p~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~ 223 (498)
T PRK13531 146 PMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKIT 223 (498)
T ss_pred CCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhccee
Confidence 1134445557422 23348888 998899999997 45557777653221 1110 0000
Q ss_pred --------HHHHHhh---C---CCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHhhccC
Q 005611 377 --------LSSYAKN---L---PGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTVG 426 (688)
Q Consensus 377 --------l~~la~~---t---~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al~~~~~g 426 (688)
+..+.+. + ...|+|...++++-|...|...|++.++.+|+. .+..+.+.
T Consensus 224 v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~H 286 (498)
T PRK13531 224 LPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWH 286 (498)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhcc
Confidence 2233331 2 237999999999999999999999999999999 55556554
No 186
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.20 E-value=8.1e-10 Score=114.64 Aligned_cols=214 Identities=18% Similarity=0.243 Sum_probs=135.9
Q ss_pred ccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCEEEeeCc-----
Q 005611 177 VAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---------GVPFYQMAGS----- 242 (688)
Q Consensus 177 V~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~---------~~~~~~v~~~----- 242 (688)
-+||..+++.|..+-+.+.+|.. ....++||+|++|.|||++++.+++.. .+|++.+.++
T Consensus 36 WIgY~~A~~~L~~L~~Ll~~P~~------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~ 109 (302)
T PF05621_consen 36 WIGYPRAKEALDRLEELLEYPKR------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDE 109 (302)
T ss_pred eecCHHHHHHHHHHHHHHhCCcc------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCCh
Confidence 39999999999888777777753 233469999999999999999999744 3577777653
Q ss_pred -hhHHHHhhh----------hhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHH
Q 005611 243 -EFVEVLVGV----------GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLI 311 (688)
Q Consensus 243 -~~~~~~~g~----------~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~ 311 (688)
.|+...... ..+.........+..++.+|+|||++.++.... ......+ .+++
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~---------------~~qr~~L-n~LK 173 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY---------------RKQREFL-NALK 173 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH---------------HHHHHHH-HHHH
Confidence 233332111 111222233445567888999999999764321 1112222 2223
Q ss_pred HhcCCCCCC--cEEEEEecCCCC--cCCccccCCCccceeeeccCCCh-hhHHHHHHHHhccCcCCCc--cC----HHHH
Q 005611 312 ELDGFDTGK--GVIFLAATNRRD--LLDPALLRPGRFDRKIRIRAPNA-KGRTEILKIHASKVKMSDS--VD----LSSY 380 (688)
Q Consensus 312 ~ld~~~~~~--~viVIaaTN~~~--~Ld~aL~r~gRf~~~I~i~~Pd~-~eR~~Il~~~l~~~~~~~~--~d----l~~l 380 (688)
.+ .+.- .++.+++-.-.+ .-|+.+.+ ||+ .+.+|.... ++-..++..+-...++... +. ...+
T Consensus 174 ~L---~NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i 247 (302)
T PF05621_consen 174 FL---GNELQIPIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRI 247 (302)
T ss_pred HH---hhccCCCeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHH
Confidence 22 2222 344444322222 34677777 887 455665543 4556677766666555422 22 2345
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHH
Q 005611 381 AKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDA 419 (688)
Q Consensus 381 a~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~A 419 (688)
-..+.| +-+++.++++.|+..|.+.|...|+.+.++..
T Consensus 248 ~~~s~G-~iG~l~~ll~~aA~~AI~sG~E~It~~~l~~~ 285 (302)
T PF05621_consen 248 HERSEG-LIGELSRLLNAAAIAAIRSGEERITREILDKI 285 (302)
T ss_pred HHHcCC-chHHHHHHHHHHHHHHHhcCCceecHHHHhhC
Confidence 556777 67899999999999999999999999988663
No 187
>PLN03130 ABC transporter C family member; Provisional
Probab=99.18 E-value=1.6e-10 Score=146.66 Aligned_cols=171 Identities=16% Similarity=0.119 Sum_probs=119.9
Q ss_pred ccceeccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccccCCCCcccccc-cc
Q 005611 101 ILSKFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRSKAEARVDGSTGVKFSDV-AG 179 (688)
Q Consensus 101 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~f~dV-~G 179 (688)
.+.+..|.+|.|.+.+++.+...+..|+..+...+..+.....+..|+.+++...+...............+.|+|+ ++
T Consensus 544 ~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~~~~~~~~~I~~~nvsf~ 623 (1622)
T PLN03130 544 VFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPNPPLEPGLPAISIKNGYFS 623 (1622)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCcccCCCCceEEEeeEEE
Confidence 55666889999999999999999999999999989999999999999988876533221110001112245888887 66
Q ss_pred cHHH--HHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC----------EEEe-------e
Q 005611 180 IDEA--VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP----------FYQM-------A 240 (688)
Q Consensus 180 ~~~~--k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~----------~~~v-------~ 240 (688)
++.. +..|+++ ++.+++++-+.++||+|+|||||++++.++.... +-++ +
T Consensus 624 y~~~~~~~vL~~i-----------nl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~Lfn 692 (1622)
T PLN03130 624 WDSKAERPTLSNI-----------NLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFN 692 (1622)
T ss_pred ccCCCCCceeece-----------eEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCC
Confidence 5421 1122222 5567788889999999999999999999976311 1111 0
Q ss_pred C-------------chhH--------------------HHHhhh------hhHHHHHHHHHHHhCCCeEEEEcccchhhh
Q 005611 241 G-------------SEFV--------------------EVLVGV------GSARIRDLFKRAKVNKPSVIFIDEIDALAT 281 (688)
Q Consensus 241 ~-------------~~~~--------------------~~~~g~------~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~ 281 (688)
+ .+.+ ++.+|+ |++++|..++||...+|+|+++||..+..+
T Consensus 693 gTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD 772 (1622)
T PLN03130 693 ATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALD 772 (1622)
T ss_pred CCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccC
Confidence 0 0000 011222 789999999999999999999999998665
Q ss_pred h
Q 005611 282 R 282 (688)
Q Consensus 282 ~ 282 (688)
.
T Consensus 773 ~ 773 (1622)
T PLN03130 773 A 773 (1622)
T ss_pred H
Confidence 4
No 188
>PTZ00243 ABC transporter; Provisional
Probab=99.18 E-value=1.7e-10 Score=146.21 Aligned_cols=114 Identities=17% Similarity=0.108 Sum_probs=80.6
Q ss_pred ccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccc-c------------------------
Q 005611 106 YEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSR-S------------------------ 160 (688)
Q Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~------------------------ 160 (688)
.+.++.|.+..++.|...+..|+..+...+..+.....+..|+.++.+..+... .
T Consensus 1211 ~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1290 (1560)
T PTZ00243 1211 ATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVV 1290 (1560)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccc
Confidence 345788999999999999999999999888888888888888877664211100 0
Q ss_pred --c--cc---ccccCCCCcccccc-cccHHHH-HHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHH
Q 005611 161 --K--AE---ARVDGSTGVKFSDV-AGIDEAV-EELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 230 (688)
Q Consensus 161 --~--~~---~~~~~~~~v~f~dV-~G~~~~k-~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~ 230 (688)
. .. ......+.+.|++| +.|.+.. ..|+++ ++.++++..+.|+|++|+|||||++++.+
T Consensus 1291 ~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~v-----------sf~I~~GekVaIVGrTGSGKSTLl~lLlr 1358 (1560)
T PTZ00243 1291 IEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGV-----------SFRIAPREKVGIVGRTGSGKSTLLLTFMR 1358 (1560)
T ss_pred cccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecc-----------eEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 0 00 00012245889998 6664322 123333 66688899999999999999999999998
No 189
>PHA02244 ATPase-like protein
Probab=99.18 E-value=8.5e-10 Score=117.69 Aligned_cols=125 Identities=27% Similarity=0.308 Sum_probs=81.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHHHHhh---hhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhc
Q 005611 208 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVG---VGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQ 284 (688)
Q Consensus 208 ~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~~~~g---~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~ 284 (688)
+..++|+||||||||++|+++|..++.|++.++...-.....| ..+.....-|.+|. ....+|+|||++.+.+.
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~p~-- 195 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF-KKGGLFFIDEIDASIPE-- 195 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh-hcCCEEEEeCcCcCCHH--
Confidence 4479999999999999999999999999999874311111111 11111112344443 35679999999985432
Q ss_pred CCccCcchhhhhhhhHHHHHHHHHHHHH-----hcC-CCCCCcEEEEEecCCC-----------CcCCccccCCCcccee
Q 005611 285 GIFKDTTDHLYNAATQERETTLNQLLIE-----LDG-FDTGKGVIFLAATNRR-----------DLLDPALLRPGRFDRK 347 (688)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~l~~LL~~-----ld~-~~~~~~viVIaaTN~~-----------~~Ld~aL~r~gRf~~~ 347 (688)
....++.++.. .++ .....++.+|+|+|.+ ..+++++++ ||- .
T Consensus 196 -----------------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~ 255 (383)
T PHA02244 196 -----------------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-P 255 (383)
T ss_pred -----------------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-E
Confidence 22333444321 111 1234678999999973 468899999 995 7
Q ss_pred eeccCCCh
Q 005611 348 IRIRAPNA 355 (688)
Q Consensus 348 I~i~~Pd~ 355 (688)
|+++.|+.
T Consensus 256 I~~dyp~~ 263 (383)
T PHA02244 256 IEFDYDEK 263 (383)
T ss_pred eeCCCCcH
Confidence 99999983
No 190
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.17 E-value=1.5e-09 Score=107.46 Aligned_cols=194 Identities=23% Similarity=0.350 Sum_probs=130.1
Q ss_pred ccCCCCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCc
Q 005611 166 VDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 242 (688)
Q Consensus 166 ~~~~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~ 242 (688)
++....+.++++.|+|.+++.|-+-...+.. ..|.++|||+|..|||||+|+||+-++. +..++.++-.
T Consensus 51 v~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~ 122 (287)
T COG2607 51 VPDPDPIDLADLVGVDRQKEALVRNTEQFAE--------GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKE 122 (287)
T ss_pred CCCCCCcCHHHHhCchHHHHHHHHHHHHHHc--------CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHH
Confidence 3445679999999999999998766554322 2456789999999999999999998766 6678888877
Q ss_pred hhHHHHhhhhhHHHHHHHHHHHhC-CCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCC--CCC
Q 005611 243 EFVEVLVGVGSARIRDLFKRAKVN-KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF--DTG 319 (688)
Q Consensus 243 ~~~~~~~g~~~~~~r~~f~~A~~~-~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~--~~~ 319 (688)
++.. +-.++...+.. ..-|||+|++-- ++.......|-..|+|- ..+
T Consensus 123 dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLSF---------------------e~gd~~yK~LKs~LeG~ve~rP 172 (287)
T COG2607 123 DLAT---------LPDLVELLRARPEKFILFCDDLSF---------------------EEGDDAYKALKSALEGGVEGRP 172 (287)
T ss_pred HHhh---------HHHHHHHHhcCCceEEEEecCCCC---------------------CCCchHHHHHHHHhcCCcccCC
Confidence 7643 23344443332 345999999732 11112234455556654 345
Q ss_pred CcEEEEEecCCCCcCCcc--------------------ccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCcc-CH-
Q 005611 320 KGVIFLAATNRRDLLDPA--------------------LLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV-DL- 377 (688)
Q Consensus 320 ~~viVIaaTN~~~~Ld~a--------------------L~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~-dl- 377 (688)
.+|++-||+|+...++.. +.=+.||...+.|++++.++-..|+.+++++.+++-+. .+
T Consensus 173 ~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~ 252 (287)
T COG2607 173 ANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELH 252 (287)
T ss_pred CeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 789999999986554421 11224999999999999999999999999887765421 11
Q ss_pred ---HHHHhhCCCCCHHHHHHHHH
Q 005611 378 ---SSYAKNLPGWTGARLAQLVQ 397 (688)
Q Consensus 378 ---~~la~~t~G~s~~dL~~lv~ 397 (688)
.+.|....|-||+-..+.++
T Consensus 253 ~eAl~WAt~rg~RSGR~A~QF~~ 275 (287)
T COG2607 253 AEALQWATTRGGRSGRVAWQFIR 275 (287)
T ss_pred HHHHHHHHhcCCCccHhHHHHHH
Confidence 12233344455555444443
No 191
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.16 E-value=5.9e-10 Score=124.81 Aligned_cols=209 Identities=25% Similarity=0.303 Sum_probs=129.9
Q ss_pred cccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcC------------------
Q 005611 172 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG------------------ 233 (688)
Q Consensus 172 v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~------------------ 233 (688)
.+|+++.|+..+++.+ .+.+..++.++|+||||+|||++++.+++...
T Consensus 188 ~d~~~v~Gq~~~~~al--------------~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGL--------------EITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhh--------------heeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 3788899988776654 23345667899999999999999999987431
Q ss_pred ----------CCEEEeeCchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHH
Q 005611 234 ----------VPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERE 303 (688)
Q Consensus 234 ----------~~~~~v~~~~~~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~ 303 (688)
.||.....+.-....+|.+.......+..|... +|||||++.+...
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gG---vLfLDEi~e~~~~--------------------- 309 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNG---VLFLDELPEFERR--------------------- 309 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCC---EEecCCchhCCHH---------------------
Confidence 111111111111223443322234556665554 9999999875422
Q ss_pred HHHHHHHHHhcCC-----------CCCCcEEEEEecCCCC---------------------cCCccccCCCccceeeecc
Q 005611 304 TTLNQLLIELDGF-----------DTGKGVIFLAATNRRD---------------------LLDPALLRPGRFDRKIRIR 351 (688)
Q Consensus 304 ~~l~~LL~~ld~~-----------~~~~~viVIaaTN~~~---------------------~Ld~aL~r~gRf~~~I~i~ 351 (688)
++..|++.|+.- ..+.++.+|+|+|... .++.++++ |||.++.++
T Consensus 310 -~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~ 386 (506)
T PRK09862 310 -TLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIP 386 (506)
T ss_pred -HHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeC
Confidence 223333333211 1235689999999742 36678888 999999999
Q ss_pred CCChhh----------HHHHHHHH----h----ccCcCCCccC----------------HHHHHhhCCCCCHHHHHHHHH
Q 005611 352 APNAKG----------RTEILKIH----A----SKVKMSDSVD----------------LSSYAKNLPGWTGARLAQLVQ 397 (688)
Q Consensus 352 ~Pd~~e----------R~~Il~~~----l----~~~~~~~~~d----------------l~~la~~t~G~s~~dL~~lv~ 397 (688)
.|+.++ ..++-+.. - ++..+...+. +.+-+....|+|.|....+++
T Consensus 387 ~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLr 466 (506)
T PRK09862 387 LPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLK 466 (506)
T ss_pred CCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 885321 11121100 0 0001111111 111122345789999999999
Q ss_pred HHHHHHHHhCCccccHHHHHHHHH
Q 005611 398 EAALVAVRKGHESILSSDMDDAVD 421 (688)
Q Consensus 398 ~A~~~A~~~~~~~I~~~di~~Al~ 421 (688)
-|...|..++++.|+.+|+.+|+.
T Consensus 467 vARTiADL~g~~~V~~~hv~eAl~ 490 (506)
T PRK09862 467 VARTIADIDQSDIITRQHLQEAVS 490 (506)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHH
Confidence 999999999999999999999986
No 192
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.6e-10 Score=133.01 Aligned_cols=159 Identities=30% Similarity=0.417 Sum_probs=109.0
Q ss_pred ccccccHHHHHHHHHHHHH----hcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcC---CCEEEeeCchhHHH
Q 005611 175 SDVAGIDEAVEELQELVRY----LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG---VPFYQMAGSEFVEV 247 (688)
Q Consensus 175 ~dV~G~~~~k~~L~~ii~~----l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~---~~~~~v~~~~~~~~ 247 (688)
+.|+|++++...+.+.+.. +.+|. +|-..+||.||+|+|||.||++||..+. ..++.+++|++.++
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~-------rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPN-------RPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCC-------CCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHH
Confidence 3479999999998887765 33332 3445789999999999999999999996 78999999999876
Q ss_pred ------------HhhhhhHHHHHHHHHH-HhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhc
Q 005611 248 ------------LVGVGSARIRDLFKRA-KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD 314 (688)
Q Consensus 248 ------------~~g~~~~~~r~~f~~A-~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld 314 (688)
|+|..+ -..+..| +.+..|||+||||+...+ ..+|-||+-||
T Consensus 564 HsVSrLIGaPPGYVGyee---GG~LTEaVRr~PySViLlDEIEKAHp----------------------dV~nilLQVlD 618 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEE---GGQLTEAVRRKPYSVILLDEIEKAHP----------------------DVFNLLLQVLD 618 (786)
T ss_pred HHHHHHhCCCCCCceecc---ccchhHhhhcCCCeEEEechhhhcCH----------------------HHHHHHHHHhc
Confidence 333322 2223333 445568999999998432 34567777776
Q ss_pred CC--CC-------CCcEEEEEecCCCCc----------------------------CCccccCCCccceeeeccCCChhh
Q 005611 315 GF--DT-------GKGVIFLAATNRRDL----------------------------LDPALLRPGRFDRKIRIRAPNAKG 357 (688)
Q Consensus 315 ~~--~~-------~~~viVIaaTN~~~~----------------------------Ld~aL~r~gRf~~~I~i~~Pd~~e 357 (688)
.= .. -+++++|+|||--.. +.|.++. |+|.+|.|.+.+.+.
T Consensus 619 dGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~ 696 (786)
T COG0542 619 DGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEV 696 (786)
T ss_pred CCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHH
Confidence 31 11 145899999985211 2344444 666677776666666
Q ss_pred HHHHHHHHhc
Q 005611 358 RTEILKIHAS 367 (688)
Q Consensus 358 R~~Il~~~l~ 367 (688)
..+|+...+.
T Consensus 697 l~~Iv~~~L~ 706 (786)
T COG0542 697 LERIVDLQLN 706 (786)
T ss_pred HHHHHHHHHH
Confidence 6666665554
No 193
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.16 E-value=7.2e-10 Score=132.42 Aligned_cols=198 Identities=22% Similarity=0.267 Sum_probs=124.7
Q ss_pred ccccccHHHHHHHHHHHHHhcChhhhhccCCCCCc-eEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhHHH---
Q 005611 175 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPH-GVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV--- 247 (688)
Q Consensus 175 ~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~-gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~~~--- 247 (688)
+.|+|++++++.+.+.+...+..-.+ -..|. .++|+||||||||.+|+++|+.+ ...++.++++++.+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~----~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~ 641 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLED----PRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTV 641 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCC----CCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhh
Confidence 35799999999888877653211100 02344 48999999999999999999988 457889999887654
Q ss_pred ---------HhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCC-
Q 005611 248 ---------LVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD- 317 (688)
Q Consensus 248 ---------~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~- 317 (688)
|+|..... .+....+.+.++||+|||++.+.+ . ..+.|++.++.-.
T Consensus 642 ~~l~g~~~gyvg~~~~g--~L~~~v~~~p~svvllDEieka~~-------------------~---v~~~Llq~ld~g~l 697 (852)
T TIGR03345 642 SRLKGSPPGYVGYGEGG--VLTEAVRRKPYSVVLLDEVEKAHP-------------------D---VLELFYQVFDKGVM 697 (852)
T ss_pred ccccCCCCCcccccccc--hHHHHHHhCCCcEEEEechhhcCH-------------------H---HHHHHHHHhhccee
Confidence 22222111 122333456679999999987432 2 2244444444211
Q ss_pred --------CCCcEEEEEecCCCC-----------------------------cCCccccCCCccceeeeccCCChhhHHH
Q 005611 318 --------TGKGVIFLAATNRRD-----------------------------LLDPALLRPGRFDRKIRIRAPNAKGRTE 360 (688)
Q Consensus 318 --------~~~~viVIaaTN~~~-----------------------------~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~ 360 (688)
.-++.++|.|||... .+.|+++. |++ +|.|.+.+.++..+
T Consensus 698 ~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~ 774 (852)
T TIGR03345 698 EDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAA 774 (852)
T ss_pred ecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHH
Confidence 114678899988521 14566666 887 88999999999999
Q ss_pred HHHHHhccC--------cCCCccC---HHHHHhhCCC--CCHHHHHHHHHHHHHHH
Q 005611 361 ILKIHASKV--------KMSDSVD---LSSYAKNLPG--WTGARLAQLVQEAALVA 403 (688)
Q Consensus 361 Il~~~l~~~--------~~~~~~d---l~~la~~t~G--~s~~dL~~lv~~A~~~A 403 (688)
|++..+... ++.-.++ ...++....+ +-.+.+.++++.-...+
T Consensus 775 Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~ 830 (852)
T TIGR03345 775 IVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPE 830 (852)
T ss_pred HHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHH
Confidence 988776542 2211122 4456655432 45677777776654433
No 194
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.16 E-value=3.3e-10 Score=128.74 Aligned_cols=191 Identities=17% Similarity=0.199 Sum_probs=118.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEe----eCchhHHHHhhh--hhH-HH-HHHHHHHHhCCCeEEEEcccc
Q 005611 206 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM----AGSEFVEVLVGV--GSA-RI-RDLFKRAKVNKPSVIFIDEID 277 (688)
Q Consensus 206 ~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v----~~~~~~~~~~g~--~~~-~~-r~~f~~A~~~~p~IL~LDEiD 277 (688)
+...++||+|+||||||++|++++.......+.. ++..+....... +++ .+ ...+.. ....+++|||+|
T Consensus 234 r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~---A~~Gil~iDEi~ 310 (509)
T smart00350 234 RGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVL---ADNGVCCIDEFD 310 (509)
T ss_pred cccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCccEEe---cCCCEEEEechh
Confidence 3444799999999999999999999775433222 111111100000 000 00 111222 234599999999
Q ss_pred hhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCC-----------CCCCcEEEEEecCCCC-------------c
Q 005611 278 ALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF-----------DTGKGVIFLAATNRRD-------------L 333 (688)
Q Consensus 278 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~-----------~~~~~viVIaaTN~~~-------------~ 333 (688)
.+.+.. + ..|++.|+.- .-+..+.||||+|..+ .
T Consensus 311 ~l~~~~-------------------q---~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~ 368 (509)
T smart00350 311 KMDDSD-------------------R---TAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENID 368 (509)
T ss_pred hCCHHH-------------------H---HHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccC
Confidence 865432 2 2333333321 1134678999999752 5
Q ss_pred CCccccCCCccceeeec-cCCChhhHHHHHHHHhccCc-----------------------------CCCccC------H
Q 005611 334 LDPALLRPGRFDRKIRI-RAPNAKGRTEILKIHASKVK-----------------------------MSDSVD------L 377 (688)
Q Consensus 334 Ld~aL~r~gRf~~~I~i-~~Pd~~eR~~Il~~~l~~~~-----------------------------~~~~~d------l 377 (688)
|++++++ |||..+.+ ..|+.+...+|.++.+.... ..+.++ +
T Consensus 369 l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i 446 (509)
T smart00350 369 LPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKL 446 (509)
T ss_pred CChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 8999999 99986555 68899888888877542110 000011 0
Q ss_pred HHHH---hh---------CCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHhh
Q 005611 378 SSYA---KN---------LPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRL 423 (688)
Q Consensus 378 ~~la---~~---------t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al~~~ 423 (688)
.++. +. ..+.|++.+..+++-|...|..+.++.++.+|+..|++-+
T Consensus 447 ~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~ 504 (509)
T smart00350 447 VKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLL 504 (509)
T ss_pred HHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 0000 10 1256899999999999999999999999999999998754
No 195
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.15 E-value=6.8e-10 Score=120.52 Aligned_cols=187 Identities=19% Similarity=0.187 Sum_probs=123.0
Q ss_pred CCCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEE-----------
Q 005611 169 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFY----------- 237 (688)
Q Consensus 169 ~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~----------- 237 (688)
..+-++++|+|++.+++.|.+.+.. -+.+..+||+||+|+||+++|.++|+.+-+.--
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS-----------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 3466899999999999999887543 256678999999999999999999997633110
Q ss_pred ----EeeCchhHHH-----------H---hh--------hhhHHHHHHHHHHH----hCCCeEEEEcccchhhhhhcCCc
Q 005611 238 ----QMAGSEFVEV-----------L---VG--------VGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIF 287 (688)
Q Consensus 238 ----~v~~~~~~~~-----------~---~g--------~~~~~~r~~f~~A~----~~~p~IL~LDEiD~l~~~~~~~~ 287 (688)
.-.|+..... . .+ .+...+|.+...+. ...|.|++|||+|.+..
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~------ 155 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA------ 155 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH------
Confidence 0001110000 0 00 11234555554432 34678999999998642
Q ss_pred cCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhc
Q 005611 288 KDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHAS 367 (688)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~ 367 (688)
...|.|+..++. .+.++++|.+|+.++.+.+.+++ |+ ..+.+++|+.++-.+++.....
T Consensus 156 ----------------~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~ 214 (365)
T PRK07471 156 ----------------NAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGP 214 (365)
T ss_pred ----------------HHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhcc
Confidence 234778887773 34556777788889999888887 64 6899999999999998887642
Q ss_pred cCcCCCccCHHHHHhhCCCCCHHHHHHHHH
Q 005611 368 KVKMSDSVDLSSYAKNLPGWTGARLAQLVQ 397 (688)
Q Consensus 368 ~~~~~~~~dl~~la~~t~G~s~~dL~~lv~ 397 (688)
. ..+..+..+++.+.| ++....++++
T Consensus 215 ~---~~~~~~~~l~~~s~G-sp~~Al~ll~ 240 (365)
T PRK07471 215 D---LPDDPRAALAALAEG-SVGRALRLAG 240 (365)
T ss_pred c---CCHHHHHHHHHHcCC-CHHHHHHHhc
Confidence 1 111123456666666 6666555543
No 196
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.15 E-value=1.1e-09 Score=131.25 Aligned_cols=168 Identities=24% Similarity=0.301 Sum_probs=109.5
Q ss_pred cccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhHHHH--
Q 005611 174 FSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVL-- 248 (688)
Q Consensus 174 f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~~~~-- 248 (688)
++.|+|++.+++.+.+.+...+..-.. .-+|...++|+||||||||++|+++++.+ +.+++.++++++.+..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~---~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~ 643 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSD---PNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSV 643 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccC---CCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhH
Confidence 456899999999998887653311000 01222468999999999999999999876 4578999998875432
Q ss_pred ---hhhh----hHHHHHHHHHHH-hCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCC--C-
Q 005611 249 ---VGVG----SARIRDLFKRAK-VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF--D- 317 (688)
Q Consensus 249 ---~g~~----~~~~r~~f~~A~-~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~--~- 317 (688)
.|.. +......+..+. ....++|+|||++.+.+. . .+.|+..++.- .
T Consensus 644 ~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~-------------------v---~~~Ll~ile~g~l~d 701 (857)
T PRK10865 644 SRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPD-------------------V---FNILLQVLDDGRLTD 701 (857)
T ss_pred HHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHH-------------------H---HHHHHHHHhhCceec
Confidence 2110 000111233333 334489999999875322 2 24444444321 1
Q ss_pred ------CCCcEEEEEecCCCC-------------------------cCCccccCCCccceeeeccCCChhhHHHHHHHHh
Q 005611 318 ------TGKGVIFLAATNRRD-------------------------LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHA 366 (688)
Q Consensus 318 ------~~~~viVIaaTN~~~-------------------------~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l 366 (688)
.-++.++|+|||... .+.|+|+. |++.++.+.+++.++..+|++..+
T Consensus 702 ~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L 779 (857)
T PRK10865 702 GQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQL 779 (857)
T ss_pred CCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHH
Confidence 123467888999731 24567777 999999999999999999988777
Q ss_pred cc
Q 005611 367 SK 368 (688)
Q Consensus 367 ~~ 368 (688)
.+
T Consensus 780 ~~ 781 (857)
T PRK10865 780 QR 781 (857)
T ss_pred HH
Confidence 54
No 197
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.15 E-value=5.7e-10 Score=119.33 Aligned_cols=169 Identities=15% Similarity=0.237 Sum_probs=114.6
Q ss_pred ccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC--------EEEeeCchh
Q 005611 173 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--------FYQMAGSEF 244 (688)
Q Consensus 173 ~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~--------~~~v~~~~~ 244 (688)
+|++|+|++.+++.|.+.+.. -+.++.+||+||+|+|||++|+++|+.+.+. +..+...+.
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-----------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~ 70 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-----------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINK 70 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-----------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccC
Confidence 689999999999998877532 2456678999999999999999999976432 222222110
Q ss_pred HHHHhhhhhHHHHHHHHHHH----hCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q 005611 245 VEVLVGVGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGK 320 (688)
Q Consensus 245 ~~~~~g~~~~~~r~~f~~A~----~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~ 320 (688)
...+...+|.+...+. .....|++|||+|.+... ..|.|+..++. ++.
T Consensus 71 ----~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~----------------------a~naLLK~LEe--pp~ 122 (313)
T PRK05564 71 ----KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQ----------------------AQNAFLKTIEE--PPK 122 (313)
T ss_pred ----CCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHH----------------------HHHHHHHHhcC--CCC
Confidence 0112345666665442 234569999999886422 23788888884 445
Q ss_pred cEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccCHHHHHhhCCC
Q 005611 321 GVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPG 386 (688)
Q Consensus 321 ~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~G 386 (688)
++++|.+|+.++.+.+.+++ |. ..+++++|+.++....++..... . ++..+..++..+.|
T Consensus 123 ~t~~il~~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~--~-~~~~~~~l~~~~~g 182 (313)
T PRK05564 123 GVFIILLCENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND--I-KEEEKKSAIAFSDG 182 (313)
T ss_pred CeEEEEEeCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC--C-CHHHHHHHHHHcCC
Confidence 56666666778999999998 65 58999999999888877765432 1 12224456665555
No 198
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.14 E-value=6.9e-10 Score=119.53 Aligned_cols=134 Identities=31% Similarity=0.398 Sum_probs=87.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHHHHhhhhhHHHHHH---HHHH-HhC----CC--eEEEEccc
Q 005611 207 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDL---FKRA-KVN----KP--SVIFIDEI 276 (688)
Q Consensus 207 ~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~~~~g~~~~~~r~~---f~~A-~~~----~p--~IL~LDEi 276 (688)
.+++++|.||||||||++|+.+|+..+.+|+.+.|.......-..+....... ...- ... .. +|+++|||
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEI 121 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEI 121 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEecc
Confidence 34579999999999999999999999999999999765433211111111110 0000 000 01 49999999
Q ss_pred chhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcC----------CCCCCcEEEEEecCC-----CCcCCccccCC
Q 005611 277 DALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDG----------FDTGKGVIFLAATNR-----RDLLDPALLRP 341 (688)
Q Consensus 277 D~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~----------~~~~~~viVIaaTN~-----~~~Ld~aL~r~ 341 (688)
+...+ ..+ +.|+..|+. +.-+..++||+|.|. ...+++++++
T Consensus 122 nra~p-------------------~~q---~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld- 178 (329)
T COG0714 122 NRAPP-------------------EVQ---NALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD- 178 (329)
T ss_pred ccCCH-------------------HHH---HHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh-
Confidence 98432 233 444444443 233467899999994 4468999999
Q ss_pred CccceeeeccCCChhh-HHHHHHH
Q 005611 342 GRFDRKIRIRAPNAKG-RTEILKI 364 (688)
Q Consensus 342 gRf~~~I~i~~Pd~~e-R~~Il~~ 364 (688)
||...++++.|+.++ ...++..
T Consensus 179 -Rf~~~~~v~yp~~~~e~~~i~~~ 201 (329)
T COG0714 179 -RFLLRIYVDYPDSEEEERIILAR 201 (329)
T ss_pred -hEEEEEecCCCCchHHHHHHHHh
Confidence 998899999995444 4444433
No 199
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=6.2e-10 Score=121.66 Aligned_cols=100 Identities=19% Similarity=0.299 Sum_probs=68.1
Q ss_pred Ccccccc-cccHHHH-HHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCE--
Q 005611 171 GVKFSDV-AGIDEAV-EELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPF-- 236 (688)
Q Consensus 171 ~v~f~dV-~G~~~~k-~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~----------~~~~-- 236 (688)
.++++|| +-|+... ..|+++ ++.++++..+.|.|++||||||+++.+++.. +.+.
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~-----------~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~ 404 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNF-----------NLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIAS 404 (573)
T ss_pred eeeeccceeecCCCccchhhcc-----------ceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhh
Confidence 4567776 5555443 334333 5667889999999999999999999999722 1111
Q ss_pred ---------------------------------------------------EEeeCchhHHHHhhh------hhHHHHHH
Q 005611 237 ---------------------------------------------------YQMAGSEFVEVLVGV------GSARIRDL 259 (688)
Q Consensus 237 ---------------------------------------------------~~v~~~~~~~~~~g~------~~~~~r~~ 259 (688)
+..+.++.++.++|+ |+++.|..
T Consensus 405 l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLA 484 (573)
T COG4987 405 LDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLA 484 (573)
T ss_pred CChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHH
Confidence 111122233334554 66788999
Q ss_pred HHHHHhCCCeEEEEcccchhhh
Q 005611 260 FKRAKVNKPSVIFIDEIDALAT 281 (688)
Q Consensus 260 f~~A~~~~p~IL~LDEiD~l~~ 281 (688)
++|+..++.+++++||-+.=.+
T Consensus 485 lAR~LL~dapl~lLDEPTegLD 506 (573)
T COG4987 485 LARALLHDAPLWLLDEPTEGLD 506 (573)
T ss_pred HHHHHHcCCCeEEecCCcccCC
Confidence 9999998888999999876443
No 200
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.12 E-value=1.9e-09 Score=129.56 Aligned_cols=203 Identities=24% Similarity=0.308 Sum_probs=128.5
Q ss_pred ccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhHHH----
Q 005611 175 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV---- 247 (688)
Q Consensus 175 ~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~~~---- 247 (688)
+.|+|++.+++.+.+.+......-. -..+|...++|+||||||||++|+++|+.+ +.+++.++++++.+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~---~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLS---DPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCC---CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHH
Confidence 4589999999999887765321100 001344569999999999999999999977 468999998876542
Q ss_pred -Hhhhh-----hHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCC--C--
Q 005611 248 -LVGVG-----SARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF--D-- 317 (688)
Q Consensus 248 -~~g~~-----~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~--~-- 317 (688)
+.|.. -.....+....+.+..+||+|||++.+.+. . .+.|++.++.- .
T Consensus 642 ~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~-------------------v---~~~Ll~~l~~g~l~d~ 699 (852)
T TIGR03346 642 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPD-------------------V---FNVLLQVLDDGRLTDG 699 (852)
T ss_pred HhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHH-------------------H---HHHHHHHHhcCceecC
Confidence 22210 000111222334455579999999975322 2 24445444321 1
Q ss_pred -----CCCcEEEEEecCCCCc-------------------------CCccccCCCccceeeeccCCChhhHHHHHHHHhc
Q 005611 318 -----TGKGVIFLAATNRRDL-------------------------LDPALLRPGRFDRKIRIRAPNAKGRTEILKIHAS 367 (688)
Q Consensus 318 -----~~~~viVIaaTN~~~~-------------------------Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~ 367 (688)
.-++.+||+|||.... +.|.|+. |++.++.+.+++.++..+|+...+.
T Consensus 700 ~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 700 QGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLG 777 (852)
T ss_pred CCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHH
Confidence 1245789999997221 3456665 9999999999999999999876664
Q ss_pred cC-------cCCCccC---HHHHHhhC--CCCCHHHHHHHHHHHHHHHH
Q 005611 368 KV-------KMSDSVD---LSSYAKNL--PGWTGARLAQLVQEAALVAV 404 (688)
Q Consensus 368 ~~-------~~~~~~d---l~~la~~t--~G~s~~dL~~lv~~A~~~A~ 404 (688)
.. ++...++ +..|++.. +.+..+.|++++++......
T Consensus 778 ~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l 826 (852)
T TIGR03346 778 RLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPL 826 (852)
T ss_pred HHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHH
Confidence 31 1111222 45566552 24567888888877765543
No 201
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.11 E-value=2.5e-09 Score=119.89 Aligned_cols=215 Identities=21% Similarity=0.289 Sum_probs=132.4
Q ss_pred ccccCCCCcccccccccHHHHHHHHHHHHHhcChhhhh----c--------------c----CCCCC-ceEEEEcCCCCh
Q 005611 164 ARVDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFD----K--------------M----GIKPP-HGVLLEGPPGCG 220 (688)
Q Consensus 164 ~~~~~~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~----~--------------~----g~~~~-~gvLL~GppGtG 220 (688)
.+++....-.|.|+.|-+..-..+..+++.. ++-.|. + + .-+|+ +-+||+||||-|
T Consensus 260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~W-D~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlG 338 (877)
T KOG1969|consen 260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQW-DPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLG 338 (877)
T ss_pred eeecccChhHHHHHhcchhHHHHHHHHHHhh-cHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCC
Confidence 4555666778999999987766655544421 011111 0 0 11233 458899999999
Q ss_pred HHHHHHHHHHhcCCCEEEeeCchhHHHHhhhhhHHHHHHHHHH--H--hCCCeEEEEcccchhhhhhcCCccCcchhhhh
Q 005611 221 KTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRA--K--VNKPSVIFIDEIDALATRRQGIFKDTTDHLYN 296 (688)
Q Consensus 221 KT~La~alA~~~~~~~~~v~~~~~~~~~~g~~~~~~r~~f~~A--~--~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~ 296 (688)
|||||+.+|+.+|..++.+++++-... ..-..++..+...- . ..+|..|++||||.-..
T Consensus 339 KTTLAHViAkqaGYsVvEINASDeRt~--~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~--------------- 401 (877)
T KOG1969|consen 339 KTTLAHVIAKQAGYSVVEINASDERTA--PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPR--------------- 401 (877)
T ss_pred hhHHHHHHHHhcCceEEEecccccccH--HHHHHHHHHHHhhccccccCCCcceEEEecccCCcH---------------
Confidence 999999999999999999999874432 11122333322211 1 15688899999996321
Q ss_pred hhhHHHHHHHHHHHHHh----cCCCC--C----------CcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHH
Q 005611 297 AATQERETTLNQLLIEL----DGFDT--G----------KGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTE 360 (688)
Q Consensus 297 ~~~~~~~~~l~~LL~~l----d~~~~--~----------~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~ 360 (688)
....++..++..- .|-.. . -.--||+.||.... |+|+.---|..++.|.+|......+
T Consensus 402 ----~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYa--PaLR~Lr~~A~ii~f~~p~~s~Lv~ 475 (877)
T KOG1969|consen 402 ----AAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYA--PALRPLRPFAEIIAFVPPSQSRLVE 475 (877)
T ss_pred ----HHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccc--hhhhhcccceEEEEecCCChhHHHH
Confidence 1112222222210 01000 0 01357888996544 5554322588899999999988888
Q ss_pred HHHHHhccCcCCCc-cCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 005611 361 ILKIHASKVKMSDS-VDLSSYAKNLPGWTGARLAQLVQEAALVAVRK 406 (688)
Q Consensus 361 Il~~~l~~~~~~~~-~dl~~la~~t~G~s~~dL~~lv~~A~~~A~~~ 406 (688)
-|+..+...++..+ ..+..|+..+ ..||++++|.-...|...
T Consensus 476 RL~~IC~rE~mr~d~~aL~~L~el~----~~DIRsCINtLQfLa~~~ 518 (877)
T KOG1969|consen 476 RLNEICHRENMRADSKALNALCELT----QNDIRSCINTLQFLASNV 518 (877)
T ss_pred HHHHHHhhhcCCCCHHHHHHHHHHh----cchHHHHHHHHHHHHHhc
Confidence 88888876665532 2355555554 559999999988887654
No 202
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.10 E-value=3.6e-10 Score=103.86 Aligned_cols=128 Identities=34% Similarity=0.486 Sum_probs=82.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCC---EEEeeCchhHHHH--------------hhhhhHHHHHHHHHHHhCCCeE
Q 005611 208 PHGVLLEGPPGCGKTLVAKAIAGEAGVP---FYQMAGSEFVEVL--------------VGVGSARIRDLFKRAKVNKPSV 270 (688)
Q Consensus 208 ~~gvLL~GppGtGKT~La~alA~~~~~~---~~~v~~~~~~~~~--------------~g~~~~~~r~~f~~A~~~~p~I 270 (688)
+..++|+||||||||++++.++..+..+ ++.+++....... ........+..++.+....|++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4579999999999999999999999775 7888776543321 1234556778888888888899
Q ss_pred EEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCC-CCcCCccccCCCccceeee
Q 005611 271 IFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNR-RDLLDPALLRPGRFDRKIR 349 (688)
Q Consensus 271 L~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~-~~~Ld~aL~r~gRf~~~I~ 349 (688)
|++||++.+....... . ............ ........+|+++|. ....+..+.+ |++..+.
T Consensus 82 iiiDei~~~~~~~~~~------------~-~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~ 143 (148)
T smart00382 82 LILDEITSLLDAEQEA------------L-LLLLEELRLLLL---LKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIV 143 (148)
T ss_pred EEEECCcccCCHHHHH------------H-HHhhhhhHHHHH---HHhcCCCEEEEEeCCCccCchhhhhh--ccceEEE
Confidence 9999999987553210 0 000000000011 122455788888886 3333444444 7888877
Q ss_pred ccCC
Q 005611 350 IRAP 353 (688)
Q Consensus 350 i~~P 353 (688)
++.+
T Consensus 144 ~~~~ 147 (148)
T smart00382 144 LLLI 147 (148)
T ss_pred ecCC
Confidence 7654
No 203
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.10 E-value=3.9e-10 Score=123.83 Aligned_cols=209 Identities=25% Similarity=0.382 Sum_probs=132.3
Q ss_pred CcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhHHH
Q 005611 171 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV 247 (688)
Q Consensus 171 ~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~~~ 247 (688)
...+.+++|....++++++.+..+... .-.|||+|++||||..+|++|.+.. +.||+.+||..+...
T Consensus 137 ~~~~~~liG~S~am~~l~~~i~kvA~s----------~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 137 KSLGGELVGESPAMQQLRRLIAKVAPS----------DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred ccccCCceecCHHHHHHHHHHHHHhCC----------CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 356788999999999999988876443 3479999999999999999998765 569999999876654
Q ss_pred H-----hhh------hh-HHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHH--h
Q 005611 248 L-----VGV------GS-ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIE--L 313 (688)
Q Consensus 248 ~-----~g~------~~-~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~--l 313 (688)
. .|. ++ .+....|+.|.. ..||||||..+... .+.-+-..|++ +
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~mpl~-------------------~Q~kLLRvLqe~~~ 264 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEMPLE-------------------LQVKLLRVLQEREF 264 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccCCHH-------------------HHHHHHHHHHcCee
Confidence 3 221 11 112234555443 38999999886432 22222222322 1
Q ss_pred cCCCC----CCcEEEEEecCCCCcCCccccCCCccce-------eeeccCCChhhHHH----HHHHHhcc----CcC-CC
Q 005611 314 DGFDT----GKGVIFLAATNRRDLLDPALLRPGRFDR-------KIRIRAPNAKGRTE----ILKIHASK----VKM-SD 373 (688)
Q Consensus 314 d~~~~----~~~viVIaaTN~~~~Ld~aL~r~gRf~~-------~I~i~~Pd~~eR~~----Il~~~l~~----~~~-~~ 373 (688)
..... +-.|-||+|||.. |...+ ..|||.. ++.+..|...+|.+ ++++++++ .+. ..
T Consensus 265 ~rvG~~~~i~vdvRiIaaT~~d--L~~~v-~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~ 341 (464)
T COG2204 265 ERVGGNKPIKVDVRIIAATNRD--LEEEV-AAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPK 341 (464)
T ss_pred EecCCCcccceeeEEEeecCcC--HHHHH-HcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCC
Confidence 22222 2358899999963 22222 1234432 77888899988876 44555443 222 12
Q ss_pred ccCHHH---HHhh-CCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHH
Q 005611 374 SVDLSS---YAKN-LPGWTGARLAQLVQEAALVAVRKGHESILSSDMDD 418 (688)
Q Consensus 374 ~~dl~~---la~~-t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~ 418 (688)
.++-.. +... ++| +.++|+|++.++...+ ....|+.+|+..
T Consensus 342 ~~s~~a~~~L~~y~WPG-NVREL~N~ver~~il~---~~~~i~~~~l~~ 386 (464)
T COG2204 342 GFSPEALAALLAYDWPG-NVRELENVVERAVILS---EGPEIEVEDLPL 386 (464)
T ss_pred CCCHHHHHHHHhCCCCh-HHHHHHHHHHHHHhcC---Cccccchhhccc
Confidence 333333 3322 455 8899999999988777 445666666543
No 204
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.09 E-value=3.2e-10 Score=128.26 Aligned_cols=207 Identities=24% Similarity=0.369 Sum_probs=125.8
Q ss_pred cccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHh-----------cCCCEEEee
Q 005611 172 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE-----------AGVPFYQMA 240 (688)
Q Consensus 172 v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~-----------~~~~~~~v~ 240 (688)
.+|++++|..+..+.+++.+..+. +.+..|||+|++||||+++|+++.+. .+.||+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A----------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYA----------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 569999999999998888776542 23457999999999999999999876 467999999
Q ss_pred CchhHHHHh-----hh------hh--HHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHH
Q 005611 241 GSEFVEVLV-----GV------GS--ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLN 307 (688)
Q Consensus 241 ~~~~~~~~~-----g~------~~--~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 307 (688)
|..+.+... |. +. ......|+.|. ...|||||++.+.... + .
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~~~-------------------Q---~ 340 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEMPLPL-------------------Q---T 340 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhCCHHH-------------------H---H
Confidence 987654322 21 00 01123455443 3489999999875432 2 2
Q ss_pred HHHHHhcC-----CCC----CCcEEEEEecCCCCcCCccccCCCccce-------eeeccCCChhhHHH----HHHHHhc
Q 005611 308 QLLIELDG-----FDT----GKGVIFLAATNRRDLLDPALLRPGRFDR-------KIRIRAPNAKGRTE----ILKIHAS 367 (688)
Q Consensus 308 ~LL~~ld~-----~~~----~~~viVIaaTN~~~~Ld~aL~r~gRf~~-------~I~i~~Pd~~eR~~----Il~~~l~ 367 (688)
.|+..++. ... +-++.+|++||..- . .+...|+|.. .+.+..|+..+|.+ +++++++
T Consensus 341 kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L--~-~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~ 417 (538)
T PRK15424 341 RLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDL--E-EDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLK 417 (538)
T ss_pred HHHhhhhcCeEEecCCCceeccceEEEEecCCCH--H-HHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHH
Confidence 33333321 111 22467899888632 1 1122233332 56677788777764 4555554
Q ss_pred c----CcCCCccCH--------HHHHhh-CCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHH
Q 005611 368 K----VKMSDSVDL--------SSYAKN-LPGWTGARLAQLVQEAALVAVRKGHESILSSDMD 417 (688)
Q Consensus 368 ~----~~~~~~~dl--------~~la~~-t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~ 417 (688)
+ .+..-..+. ..|... ++| +.++|++++++++..+.......++.+++.
T Consensus 418 ~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WPG-NvREL~nvier~~i~~~~~~~~~i~~~~l~ 479 (538)
T PRK15424 418 QSLAALSAPFSAALRQGLQQCETLLLHYDWPG-NVRELRNLMERLALFLSVEPTPDLTPQFLQ 479 (538)
T ss_pred HHHHHcCCCCCHHHHHhhHHHHHHHHhCCCCc-hHHHHHHHHHHHHHhcCCCCcCccCHHHhh
Confidence 3 222111111 122222 455 899999999999886532223456666653
No 205
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.09 E-value=2.6e-09 Score=128.06 Aligned_cols=167 Identities=26% Similarity=0.317 Sum_probs=109.2
Q ss_pred ccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhHHH----
Q 005611 175 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV---- 247 (688)
Q Consensus 175 ~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~~~---- 247 (688)
+.|+|++++++.+.+.+...+..-. + .-+|...++|+||||||||++|+++|+.+ ..+++.++++++.+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~--~-~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLK--N-PNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhccc--C-CCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHH
Confidence 4579999999998887764221100 0 01233458999999999999999999987 467888888876432
Q ss_pred -Hhhhh-----hHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCC-----
Q 005611 248 -LVGVG-----SARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF----- 316 (688)
Q Consensus 248 -~~g~~-----~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~----- 316 (688)
+.|.. ......+....+.+..+||+|||+|.+.+. ..+.|++.++.-
T Consensus 586 ~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~----------------------v~~~Llq~le~g~~~d~ 643 (821)
T CHL00095 586 KLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPD----------------------IFNLLLQILDDGRLTDS 643 (821)
T ss_pred HhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHH----------------------HHHHHHHHhccCceecC
Confidence 22211 011122333444455589999999985422 235555555531
Q ss_pred ----CCCCcEEEEEecCCCCc-------------------------------------CCccccCCCccceeeeccCCCh
Q 005611 317 ----DTGKGVIFLAATNRRDL-------------------------------------LDPALLRPGRFDRKIRIRAPNA 355 (688)
Q Consensus 317 ----~~~~~viVIaaTN~~~~-------------------------------------Ld~aL~r~gRf~~~I~i~~Pd~ 355 (688)
..-+++++|.|||.... +.|.++. |+|.+|.|.+.+.
T Consensus 644 ~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~ 721 (821)
T CHL00095 644 KGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTK 721 (821)
T ss_pred CCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCH
Confidence 01256889999985321 2244555 8999999999999
Q ss_pred hhHHHHHHHHhcc
Q 005611 356 KGRTEILKIHASK 368 (688)
Q Consensus 356 ~eR~~Il~~~l~~ 368 (688)
++..+|++..+.+
T Consensus 722 ~~l~~Iv~~~l~~ 734 (821)
T CHL00095 722 NDVWEIAEIMLKN 734 (821)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877654
No 206
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.09 E-value=1e-09 Score=108.46 Aligned_cols=144 Identities=19% Similarity=0.266 Sum_probs=96.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCC------------------------EEEeeCchhHHHHhhhhhHHHHHHHH
Q 005611 206 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVP------------------------FYQMAGSEFVEVLVGVGSARIRDLFK 261 (688)
Q Consensus 206 ~~~~gvLL~GppGtGKT~La~alA~~~~~~------------------------~~~v~~~~~~~~~~g~~~~~~r~~f~ 261 (688)
+.+..+||+||+|+|||++++.+++...+. +..+.... ...+...++.++.
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~-----~~~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG-----QSIKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc-----CcCCHHHHHHHHH
Confidence 456789999999999999999999987442 22221110 0012345666665
Q ss_pred HHHh----CCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCcc
Q 005611 262 RAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPA 337 (688)
Q Consensus 262 ~A~~----~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~a 337 (688)
.+.. ....|++|||+|.+... ..+.|+..++. .+.++++|.+||.++.+.++
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~~~----------------------~~~~Ll~~le~--~~~~~~~il~~~~~~~l~~~ 142 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMNEA----------------------AANALLKTLEE--PPPNTLFILITPSPEKLLPT 142 (188)
T ss_pred HHccCcccCCeEEEEEechhhhCHH----------------------HHHHHHHHhcC--CCCCeEEEEEECChHhChHH
Confidence 5543 34569999999987532 23567777775 33455566667778899999
Q ss_pred ccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccCHHHHHhhCCC
Q 005611 338 LLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPG 386 (688)
Q Consensus 338 L~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~G 386 (688)
+++ |+ ..+++++|+.++..++++.. +++ +..+..++..+.|
T Consensus 143 i~s--r~-~~~~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 143 IRS--RC-QVLPFPPLSEEALLQWLIRQ----GIS-EEAAELLLALAGG 183 (188)
T ss_pred HHh--hc-EEeeCCCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCC
Confidence 998 66 48999999999998888776 222 2235555555554
No 207
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.08 E-value=1.2e-09 Score=116.44 Aligned_cols=184 Identities=15% Similarity=0.214 Sum_probs=122.5
Q ss_pred ccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----------------
Q 005611 173 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP----------------- 235 (688)
Q Consensus 173 ~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~----------------- 235 (688)
.|++|+|++.+++.|.+.+.. -+.+...||+||+|+||+++|.++|+.+-+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 589999999999999888653 2456789999999999999999999876322
Q ss_pred -EEEeeCch------hHHHH---hh--------hhhHHHHHHHHHHH----hCCCeEEEEcccchhhhhhcCCccCcchh
Q 005611 236 -FYQMAGSE------FVEVL---VG--------VGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIFKDTTDH 293 (688)
Q Consensus 236 -~~~v~~~~------~~~~~---~g--------~~~~~~r~~f~~A~----~~~p~IL~LDEiD~l~~~~~~~~~~~~~~ 293 (688)
++.+.... ..... .| -.-..+|.+...+. .....|++||++|.+...
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~----------- 139 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEA----------- 139 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHH-----------
Confidence 11111100 00000 00 01124555544443 234579999999886432
Q ss_pred hhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCC
Q 005611 294 LYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD 373 (688)
Q Consensus 294 ~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~ 373 (688)
..|.||..|+... +.++|..|+.++.|.|.+++ |. ..++|++|+.++..++++....... .
T Consensus 140 -----------aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~--~ 200 (314)
T PRK07399 140 -----------AANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEI--L 200 (314)
T ss_pred -----------HHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhcccc--c
Confidence 3378888887533 33566677789999999998 74 6899999999999998887643211 1
Q ss_pred ccCHHHHHhhCCCCCHHHHHHHHHH
Q 005611 374 SVDLSSYAKNLPGWTGARLAQLVQE 398 (688)
Q Consensus 374 ~~dl~~la~~t~G~s~~dL~~lv~~ 398 (688)
+.+...++....| +++...++++.
T Consensus 201 ~~~~~~l~~~a~G-s~~~al~~l~~ 224 (314)
T PRK07399 201 NINFPELLALAQG-SPGAAIANIEQ 224 (314)
T ss_pred hhHHHHHHHHcCC-CHHHHHHHHHH
Confidence 1224677777777 77776665543
No 208
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.08 E-value=6.6e-10 Score=125.83 Aligned_cols=216 Identities=23% Similarity=0.299 Sum_probs=127.5
Q ss_pred CcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhHHH
Q 005611 171 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV 247 (688)
Q Consensus 171 ~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~~~ 247 (688)
..+|++++|..+..+.+.+.+..+. +.+..|||+|++||||+++|+++.+.. +.||+.++|..+.+.
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A----------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYA----------RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 4679999999999988888776542 234579999999999999999998754 679999999876543
Q ss_pred Hh-----hhh------h--HHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhc
Q 005611 248 LV-----GVG------S--ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD 314 (688)
Q Consensus 248 ~~-----g~~------~--~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld 314 (688)
.. |.. . ......|+.|. ...|||||++.+.... +..+-.++++-.
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~~~-------------------Q~~Ll~~L~~~~ 335 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEMPLPL-------------------QTRLLRVLEERE 335 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhCCHHH-------------------HHHHHHHHhcCc
Confidence 22 110 0 01123444433 3489999999875432 222223332211
Q ss_pred --CCCC----CCcEEEEEecCCCC--cCCccccCCCccce--eeeccCCChhhHHH----HHHHHhccCcC--CCccC--
Q 005611 315 --GFDT----GKGVIFLAATNRRD--LLDPALLRPGRFDR--KIRIRAPNAKGRTE----ILKIHASKVKM--SDSVD-- 376 (688)
Q Consensus 315 --~~~~----~~~viVIaaTN~~~--~Ld~aL~r~gRf~~--~I~i~~Pd~~eR~~----Il~~~l~~~~~--~~~~d-- 376 (688)
.... +-++.+|++||..- .+.....|+.-|.+ .+.+..|+..+|.+ ++++++.+... ...++
T Consensus 336 ~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ 415 (526)
T TIGR02329 336 VVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEA 415 (526)
T ss_pred EEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHH
Confidence 1111 12357888887642 12222221111111 45667777777754 44555543211 11122
Q ss_pred -HHH-------HHhh-CCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHH
Q 005611 377 -LSS-------YAKN-LPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDA 419 (688)
Q Consensus 377 -l~~-------la~~-t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~A 419 (688)
+.. |.+. ++| +.++|++++++++..+.......|+.+++...
T Consensus 416 a~~~~~~~~~~L~~y~WPG-NvrEL~nvier~~i~~~~~~~~~I~~~~l~~~ 466 (526)
T TIGR02329 416 AAQVLAGVADPLQRYPWPG-NVRELRNLVERLALELSAMPAGALTPDVLRAL 466 (526)
T ss_pred HHHHhHHHHHHHHhCCCCc-hHHHHHHHHHHHHHhcccCCCCccCHHHhhhh
Confidence 121 3333 455 89999999999987753223457888886543
No 209
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.08 E-value=4.1e-10 Score=129.86 Aligned_cols=102 Identities=18% Similarity=0.225 Sum_probs=67.6
Q ss_pred cEEEEEecCCC--CcCCccccCCCccc---eeeecc--CCC-hhhHHHHHHHHhc---cCcCCCccC---HHHHH---hh
Q 005611 321 GVIFLAATNRR--DLLDPALLRPGRFD---RKIRIR--APN-AKGRTEILKIHAS---KVKMSDSVD---LSSYA---KN 383 (688)
Q Consensus 321 ~viVIaaTN~~--~~Ld~aL~r~gRf~---~~I~i~--~Pd-~~eR~~Il~~~l~---~~~~~~~~d---l~~la---~~ 383 (688)
.+.+|+++|.. ..+++++++ ||+ ..+.++ .|+ .+.|.++.+...+ +.+..+.++ +..+. .+
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R 345 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQR 345 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 57899999974 578999999 998 555554 344 5555555443332 221122233 22222 22
Q ss_pred CC------CCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHhhc
Q 005611 384 LP------GWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLT 424 (688)
Q Consensus 384 t~------G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al~~~~ 424 (688)
.. ..+.++|.+++++|...|..+++..|+.+|+.+|++...
T Consensus 346 ~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~ 392 (608)
T TIGR00764 346 RAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAK 392 (608)
T ss_pred HHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHH
Confidence 11 246799999999998888888889999999999987553
No 210
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.6e-10 Score=125.19 Aligned_cols=210 Identities=26% Similarity=0.347 Sum_probs=129.1
Q ss_pred CcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc------------------
Q 005611 171 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA------------------ 232 (688)
Q Consensus 171 ~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~------------------ 232 (688)
..+|.||.|++.+|..|... ...+++++++||||||||++|+.+..-+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiA--------------AAGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~ 240 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIA--------------AAGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLA 240 (490)
T ss_pred CcchhhhcCcHHHHHHHHHH--------------HhcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhc
Confidence 56899999999999998665 3456789999999999999999998622
Q ss_pred -----------CCCEEEeeCchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHH
Q 005611 233 -----------GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE 301 (688)
Q Consensus 233 -----------~~~~~~v~~~~~~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~ 301 (688)
..||..-..+.-....+|.+..-.-.-+..|. -.||||||+-.+-
T Consensus 241 g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH---~GVLFLDElpef~--------------------- 296 (490)
T COG0606 241 GDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAH---NGVLFLDELPEFK--------------------- 296 (490)
T ss_pred ccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeec---CCEEEeeccchhh---------------------
Confidence 01222111111122233332111111122222 2399999986532
Q ss_pred HHHHHHHHHHHhcCCC-----------CCCcEEEEEecCCCC-----------------------cCCccccCCCcccee
Q 005611 302 RETTLNQLLIELDGFD-----------TGKGVIFLAATNRRD-----------------------LLDPALLRPGRFDRK 347 (688)
Q Consensus 302 ~~~~l~~LL~~ld~~~-----------~~~~viVIaaTN~~~-----------------------~Ld~aL~r~gRf~~~ 347 (688)
..+++.|.+-|+.-. -..++..|+++|..- .+...+++ |+|..
T Consensus 297 -~~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~ 373 (490)
T COG0606 297 -RSILEALREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLM 373 (490)
T ss_pred -HHHHHHHhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhhe
Confidence 245556555554210 123467788888521 24456666 99999
Q ss_pred eeccCCChhhH--------------HHHHHH------HhccCcCC----------------CccCHHHHHhhCCCCCHHH
Q 005611 348 IRIRAPNAKGR--------------TEILKI------HASKVKMS----------------DSVDLSSYAKNLPGWTGAR 391 (688)
Q Consensus 348 I~i~~Pd~~eR--------------~~Il~~------~l~~~~~~----------------~~~dl~~la~~t~G~s~~d 391 (688)
++++.++..++ ..+.+. ...+.... .+.++.+.+-..-++|.+.
T Consensus 374 vev~~~~~~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~ 453 (490)
T COG0606 374 VEVPRLSAGELIRQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARA 453 (490)
T ss_pred ecccCCCHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHH
Confidence 99998764332 112211 11111001 1122334444556789999
Q ss_pred HHHHHHHHHHHHHHhCCccccHHHHHHHHH
Q 005611 392 LAQLVQEAALVAVRKGHESILSSDMDDAVD 421 (688)
Q Consensus 392 L~~lv~~A~~~A~~~~~~~I~~~di~~Al~ 421 (688)
...+++-|..+|..++.+.|...|+.+|+.
T Consensus 454 ~~rILKvarTiADL~g~~~i~~~hl~eAi~ 483 (490)
T COG0606 454 YHRILKVARTIADLEGSEQIERSHLAEAIS 483 (490)
T ss_pred HHHHHHHHhhhhcccCcchhhHHHHHHHHh
Confidence 999999999999999999999999999875
No 211
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.05 E-value=1.9e-10 Score=113.60 Aligned_cols=143 Identities=28% Similarity=0.395 Sum_probs=68.3
Q ss_pred ccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc--------------------
Q 005611 173 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-------------------- 232 (688)
Q Consensus 173 ~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~-------------------- 232 (688)
+|+||.|++.+|..|.-... .++++|++||||||||++|+.+..-+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa--------------G~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA--------------GGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH--------------CC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred ChhhhcCcHHHHHHHHHHHc--------------CCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 58999999999998865522 24689999999999999999999832
Q ss_pred --------CCCEEEeeCchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHH
Q 005611 233 --------GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERET 304 (688)
Q Consensus 233 --------~~~~~~v~~~~~~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (688)
..||.....+.-....+|.+....-..+..|... |||+||+..+- ..
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~G---VLflDE~~ef~----------------------~~ 121 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRG---VLFLDELNEFD----------------------RS 121 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTS---EEEECETTTS-----------------------HH
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCC---EEEechhhhcC----------------------HH
Confidence 1234433333333334443332223344444443 99999997643 23
Q ss_pred HHHHHHHHhcCC-----------CCCCcEEEEEecCCC-----------------------CcCCccccCCCccceeeec
Q 005611 305 TLNQLLIELDGF-----------DTGKGVIFLAATNRR-----------------------DLLDPALLRPGRFDRKIRI 350 (688)
Q Consensus 305 ~l~~LL~~ld~~-----------~~~~~viVIaaTN~~-----------------------~~Ld~aL~r~gRf~~~I~i 350 (688)
+++.|.+-++.- .-+.++++|+|+|.- ..+...+++ |||.++++
T Consensus 122 vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~ 199 (206)
T PF01078_consen 122 VLDALRQPLEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEV 199 (206)
T ss_dssp HHHHHHHHHHHSBEEEEETTEEEEEB--EEEEEEE-S-------------------------------------------
T ss_pred HHHHHHHHHHCCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccc--cccccccc
Confidence 455555555421 112357899998841 124555666 77777777
Q ss_pred cCCChh
Q 005611 351 RAPNAK 356 (688)
Q Consensus 351 ~~Pd~~ 356 (688)
+..+.+
T Consensus 200 ~~~~~~ 205 (206)
T PF01078_consen 200 PRVSYE 205 (206)
T ss_dssp ------
T ss_pred cccccC
Confidence 665543
No 212
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.05 E-value=6.8e-10 Score=119.92 Aligned_cols=197 Identities=27% Similarity=0.361 Sum_probs=124.2
Q ss_pred CCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHh----cCCCEEEeeCchhH
Q 005611 170 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE----AGVPFYQMAGSEFV 245 (688)
Q Consensus 170 ~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~----~~~~~~~v~~~~~~ 245 (688)
....+++++|.+...+++++.++.+ .+.+..||+.|++||||+.+|+++... .+.||+.+||..+.
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAY----------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhh----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 4567899999999988888877652 234557999999999999999999643 46799999999876
Q ss_pred HHHhhh-----------h-hHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHh
Q 005611 246 EVLVGV-----------G-SARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIEL 313 (688)
Q Consensus 246 ~~~~g~-----------~-~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~l 313 (688)
+..... | ...-..+|++|... +||+|||..+....+ ..++..+
T Consensus 143 en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GG---tLfLDEI~~LP~~~Q----------------------~kLl~~l 197 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGAQGGKAGLFEQANGG---TLFLDEIHRLPPEGQ----------------------EKLLRVL 197 (403)
T ss_pred cCHHHHHHhccccceeecccCCcCchheecCCC---EEehhhhhhCCHhHH----------------------HHHHHHH
Confidence 543221 1 12233455555443 999999999765432 2344444
Q ss_pred cC-----C----CCCCcEEEEEecCCC--CcCCc--cccCCCccceeeeccCCChhhHHH----HH----HHHhccCcCC
Q 005611 314 DG-----F----DTGKGVIFLAATNRR--DLLDP--ALLRPGRFDRKIRIRAPNAKGRTE----IL----KIHASKVKMS 372 (688)
Q Consensus 314 d~-----~----~~~~~viVIaaTN~~--~~Ld~--aL~r~gRf~~~I~i~~Pd~~eR~~----Il----~~~l~~~~~~ 372 (688)
+. + ....+|.+|+|||.. +.+-. .+.+. |+ .+.+..|+.++|.. ++ +.++++.+..
T Consensus 198 e~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~--~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~ 274 (403)
T COG1221 198 EEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRR-LN--ILTITLPPLRERKEDILLLAEHFLKSEARRLGLP 274 (403)
T ss_pred HcCceEecCCCCCcCCCceeeeccccCHHHHHHhhcchhhh-hc--CceecCCChhhchhhHHHHHHHHHHHHHHHcCCC
Confidence 32 1 123468899998841 22222 33331 33 34455566666643 33 3444444444
Q ss_pred CccCH----HHHH-hhCCCCCHHHHHHHHHHHHHHHHH
Q 005611 373 DSVDL----SSYA-KNLPGWTGARLAQLVQEAALVAVR 405 (688)
Q Consensus 373 ~~~dl----~~la-~~t~G~s~~dL~~lv~~A~~~A~~ 405 (688)
...+. ..+- ...+| +.++|++++++++..+..
T Consensus 275 ~~~~~~~a~~~L~~y~~pG-NirELkN~Ve~~~~~~~~ 311 (403)
T COG1221 275 LSVDSPEALRALLAYDWPG-NIRELKNLVERAVAQASG 311 (403)
T ss_pred CCCCCHHHHHHHHhCCCCC-cHHHHHHHHHHHHHHhcc
Confidence 33222 2222 22466 899999999999988843
No 213
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.04 E-value=2.2e-09 Score=123.17 Aligned_cols=258 Identities=13% Similarity=0.197 Sum_probs=139.5
Q ss_pred cccCCCCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEE-eeC--
Q 005611 165 RVDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ-MAG-- 241 (688)
Q Consensus 165 ~~~~~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~-v~~-- 241 (688)
..+...+.+++|++|.++.+++++.++.... ++..+++.++|+||||||||++++.+|++++..+.. .+.
T Consensus 74 W~eKyrP~~ldel~~~~~ki~~l~~~l~~~~-------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~ 146 (637)
T TIGR00602 74 WVEKYKPETQHELAVHKKKIEEVETWLKAQV-------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTL 146 (637)
T ss_pred hHHHhCCCCHHHhcCcHHHHHHHHHHHHhcc-------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhh
Confidence 3445567899999999999998888765432 223445569999999999999999999988765422 110
Q ss_pred -c---hhH-------HHH--hhhhhHHHHHHHHHHHh----------CCCeEEEEcccchhhhhhcCCccCcchhhhhhh
Q 005611 242 -S---EFV-------EVL--VGVGSARIRDLFKRAKV----------NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAA 298 (688)
Q Consensus 242 -~---~~~-------~~~--~g~~~~~~r~~f~~A~~----------~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~ 298 (688)
. ..+ +.+ ........+.++.++.. ....||+|||++.+....
T Consensus 147 ~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~--------------- 211 (637)
T TIGR00602 147 PDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRD--------------- 211 (637)
T ss_pred hcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhh---------------
Confidence 0 000 000 01122334455555542 345699999999865321
Q ss_pred hHHHHHHHHHHHH-HhcCCCCCCcEEEEEecCCCC--------------cCCccccCCCccceeeeccCCChhhHHHHHH
Q 005611 299 TQERETTLNQLLI-ELDGFDTGKGVIFLAATNRRD--------------LLDPALLRPGRFDRKIRIRAPNAKGRTEILK 363 (688)
Q Consensus 299 ~~~~~~~l~~LL~-~ld~~~~~~~viVIaaTN~~~--------------~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~ 363 (688)
...+..++. ... ....-.+|+++|..+. .|.+++++..|. .+|.|++.+..+..+.|+
T Consensus 212 ----~~~lq~lLr~~~~--e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~ 284 (637)
T TIGR00602 212 ----TRALHEILRWKYV--SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLN 284 (637)
T ss_pred ----HHHHHHHHHHHhh--cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHH
Confidence 112334444 211 1122223333332222 133566642243 379999999999777777
Q ss_pred HHhccCcC--C------CccCHHHHHhhCCCCCHHHHHHHHHHHHHHHH-------HhCCccccHHHHHHHHHhhccCCC
Q 005611 364 IHASKVKM--S------DSVDLSSYAKNLPGWTGARLAQLVQEAALVAV-------RKGHESILSSDMDDAVDRLTVGPK 428 (688)
Q Consensus 364 ~~l~~~~~--~------~~~dl~~la~~t~G~s~~dL~~lv~~A~~~A~-------~~~~~~I~~~di~~Al~~~~~g~~ 428 (688)
..+..... . ....+..++....| |++.+++.-...+. ..+...++..++..+..+......
T Consensus 285 rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~G----DiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~~k~~~~t~ 360 (637)
T TIGR00602 285 RIVTIEAKKNGEKIKVPKKTSVELLCQGCSG----DIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSKIKGKHSSN 360 (637)
T ss_pred HHHHhhhhccccccccCCHHHHHHHHHhCCC----hHHHHHHHHHHHHhcCCccccccccccccHHHhhhccccCCCCCc
Confidence 66654211 1 11235666665544 66666655444432 223345666666655443321000
Q ss_pred ccC---ccccCCcchhHHHHHHHHHHHHHH
Q 005611 429 RRG---IELGNQGQSRRAATEVGVAMISHL 455 (688)
Q Consensus 429 ~~~---~~~~~~~~~~ia~hE~GhAvv~~~ 455 (688)
... ..+...+.....+|-.|+.+-...
T Consensus 361 ~e~~~l~~~~~rd~sl~lfhalgkily~Kr 390 (637)
T TIGR00602 361 NENQEIQALGGKDVSLFLFRALGKILYCKR 390 (637)
T ss_pred hhHHHHHhhccccchhHHHHHhChhhcccc
Confidence 000 011222334456777776665544
No 214
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.03 E-value=2.1e-09 Score=117.66 Aligned_cols=156 Identities=26% Similarity=0.366 Sum_probs=87.8
Q ss_pred cccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-------EEEeeCchhHH
Q 005611 174 FSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------FYQMAGSEFVE 246 (688)
Q Consensus 174 f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~-------~~~v~~~~~~~ 246 (688)
++++++.+...+.+...+ ...++++|+||||||||++|+.+|..++.. .+.++.+--+.
T Consensus 174 l~d~~i~e~~le~l~~~L--------------~~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKRL--------------TIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHHH--------------hcCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 667777666655553332 234589999999999999999999877431 22333222223
Q ss_pred HHh-hh-----hh----HHHHHHHHHHHhC--CCeEEEEcccchhhhhhcCCccCcchhhhhhhhHH-HHH--HHHHHHH
Q 005611 247 VLV-GV-----GS----ARIRDLFKRAKVN--KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE-RET--TLNQLLI 311 (688)
Q Consensus 247 ~~~-g~-----~~----~~~r~~f~~A~~~--~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~-~~~--~l~~LL~ 311 (688)
.++ |. +- .....+..+|... .|++|||||++.....+- ++. +....... +.. .+.....
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~ki--FGe----l~~lLE~~~rg~~~~v~l~y~ 313 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKV--FGE----VMMLMEHDKRGENWSVPLTYS 313 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHh--hhh----hhhhccccccccccceeeecc
Confidence 332 11 11 1233445566543 579999999998543320 000 00000000 000 0000000
Q ss_pred H--hcCCCCCCcEEEEEecCCCC----cCCccccCCCccceeeeccC
Q 005611 312 E--LDGFDTGKGVIFLAATNRRD----LLDPALLRPGRFDRKIRIRA 352 (688)
Q Consensus 312 ~--ld~~~~~~~viVIaaTN~~~----~Ld~aL~r~gRf~~~I~i~~ 352 (688)
+ .+.+..+.++.||||+|..+ .+|.|++| ||. .|++.+
T Consensus 314 e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 314 ENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred ccccccccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 1 12345678899999999988 69999999 995 456654
No 215
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=2.5e-09 Score=123.46 Aligned_cols=220 Identities=20% Similarity=0.278 Sum_probs=147.0
Q ss_pred CcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEee
Q 005611 171 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMA 240 (688)
Q Consensus 171 ~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~----------~~~~~~v~ 240 (688)
.-+++-|+|.++.++++-+++.. +..++-+|+|+||+|||.++.-+|.+. +..++..+
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~R------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILSR------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHhc------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 45788899999888777666542 122345899999999999999999854 45567777
Q ss_pred CchhH--HHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCC
Q 005611 241 GSEFV--EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT 318 (688)
Q Consensus 241 ~~~~~--~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~ 318 (688)
...+. .+|.|+.+++++..+.......+.||||||+|.+.+......+ .+ ..-|-|.-.| .
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~-a~------------DAaNiLKPaL----A 296 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG-AM------------DAANLLKPAL----A 296 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc-cc------------chhhhhHHHH----h
Confidence 77665 3478899999999999999888999999999999876543111 11 0112222222 2
Q ss_pred CCcEEEEEecCCCC-----cCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccC-----HHH---HHhh--
Q 005611 319 GKGVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-----LSS---YAKN-- 383 (688)
Q Consensus 319 ~~~viVIaaTN~~~-----~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~d-----l~~---la~~-- 383 (688)
+..+-+|+||+..+ .-|+||-| ||. .|.+.-|+.++-..||+-.-.++.....+. +.. ++.+
T Consensus 297 RGeL~~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI 373 (786)
T COG0542 297 RGELRCIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYI 373 (786)
T ss_pred cCCeEEEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhc
Confidence 45678888887643 36899999 997 788999999999999987665543332221 222 2222
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHh
Q 005611 384 LPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDR 422 (688)
Q Consensus 384 t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al~~ 422 (688)
+..+=|.-...++.+|+.....+.......+.++.-+..
T Consensus 374 ~dR~LPDKAIDLiDeA~a~~~l~~~~p~~l~~~~~~~~~ 412 (786)
T COG0542 374 PDRFLPDKAIDLLDEAGARVRLEIDKPEELDELERELAQ 412 (786)
T ss_pred ccCCCCchHHHHHHHHHHHHHhcccCCcchhHHHHHHHH
Confidence 233445556678888877665443233344444444433
No 216
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.02 E-value=1e-09 Score=126.43 Aligned_cols=188 Identities=21% Similarity=0.246 Sum_probs=122.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC--CCEEEeeCchhHHHHhhhhh--HHH--------HHHHHHHHhCCCeEEEEccc
Q 005611 209 HGVLLEGPPGCGKTLVAKAIAGEAG--VPFYQMAGSEFVEVLVGVGS--ARI--------RDLFKRAKVNKPSVIFIDEI 276 (688)
Q Consensus 209 ~gvLL~GppGtGKT~La~alA~~~~--~~~~~v~~~~~~~~~~g~~~--~~~--------r~~f~~A~~~~p~IL~LDEi 276 (688)
.+|||.|+||||||++|+++++.+. .||+.+......+...|... ..+ ...+.+ .+..+|||||+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~---A~~GvL~lDEi 93 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDE---APRGVLYVDMA 93 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeee---CCCCcEeccch
Confidence 3799999999999999999999775 36887775433333333210 000 001111 22349999999
Q ss_pred chhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCC-----------CCCCcEEEEEecCCCC---cCCccccCCC
Q 005611 277 DALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF-----------DTGKGVIFLAATNRRD---LLDPALLRPG 342 (688)
Q Consensus 277 D~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~-----------~~~~~viVIaaTN~~~---~Ld~aL~r~g 342 (688)
+.+.+.. .+.|+..|+.- ..+..+.||||+|..+ .++++++.
T Consensus 94 ~rl~~~~----------------------q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld-- 149 (589)
T TIGR02031 94 NLLDDGL----------------------SNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD-- 149 (589)
T ss_pred hhCCHHH----------------------HHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--
Confidence 9875432 24455555321 1124688999999765 68899999
Q ss_pred ccceeeecc-CCChhhHHHHHHHHhccC-------------------------cCCCccCHHHHHhh--CCCC-CHHHHH
Q 005611 343 RFDRKIRIR-APNAKGRTEILKIHASKV-------------------------KMSDSVDLSSYAKN--LPGW-TGARLA 393 (688)
Q Consensus 343 Rf~~~I~i~-~Pd~~eR~~Il~~~l~~~-------------------------~~~~~~dl~~la~~--t~G~-s~~dL~ 393 (688)
||..++.+. +|+.++|.+|++...... .++++ .+..++.. ..|. +.+.-.
T Consensus 150 Rf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~-~~~~l~~~~~~~gv~s~Ra~i 228 (589)
T TIGR02031 150 RLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAE-QVKELVLTAASLGISGHRADL 228 (589)
T ss_pred hccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHH-HHHHHHHHHHHcCCCCccHHH
Confidence 999988776 456777889887755211 01111 12222222 1233 356677
Q ss_pred HHHHHHHHHHHHhCCccccHHHHHHHHHhhc
Q 005611 394 QLVQEAALVAVRKGHESILSSDMDDAVDRLT 424 (688)
Q Consensus 394 ~lv~~A~~~A~~~~~~~I~~~di~~Al~~~~ 424 (688)
.+++-|...|..++++.|+.+|+..|..-+.
T Consensus 229 ~~~r~ArA~Aal~gr~~V~~~Dv~~a~~lvl 259 (589)
T TIGR02031 229 FAVRAAKAHAALHGRTEVTEEDLKLAVELVL 259 (589)
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Confidence 8889999999999999999999999987665
No 217
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.02 E-value=2.2e-10 Score=107.31 Aligned_cols=113 Identities=35% Similarity=0.414 Sum_probs=69.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHHH--HhhhhhH------HHHHHHHHHHhCCCeEEEEcccchhhh
Q 005611 210 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV--LVGVGSA------RIRDLFKRAKVNKPSVIFIDEIDALAT 281 (688)
Q Consensus 210 gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~~--~~g~~~~------~~r~~f~~A~~~~p~IL~LDEiD~l~~ 281 (688)
+|+|+||||||||++++.+|+.++.+++.++++...+. +.|.-.- .....+.++. ..+++++|||++...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a~- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRAP- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccCC-
Confidence 48999999999999999999999999999988764432 2221000 0000111111 157899999999743
Q ss_pred hhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCC-------C-CCC------cEEEEEecCCCC----cCCccccCCCc
Q 005611 282 RRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF-------D-TGK------GVIFLAATNRRD----LLDPALLRPGR 343 (688)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~-------~-~~~------~viVIaaTN~~~----~Ld~aL~r~gR 343 (688)
.+....++.++..-.-. . ... ++.+|+|+|..+ .+++++++ |
T Consensus 79 ------------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--R 138 (139)
T PF07728_consen 79 ------------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--R 138 (139)
T ss_dssp ------------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T
T ss_pred ------------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--h
Confidence 22233333443321100 0 111 489999999988 89999999 8
Q ss_pred c
Q 005611 344 F 344 (688)
Q Consensus 344 f 344 (688)
|
T Consensus 139 f 139 (139)
T PF07728_consen 139 F 139 (139)
T ss_dssp -
T ss_pred C
Confidence 7
No 218
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.00 E-value=3.4e-09 Score=124.33 Aligned_cols=114 Identities=18% Similarity=0.140 Sum_probs=77.3
Q ss_pred cccChhhHHH-HHHH---HHHHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc------c--c------------
Q 005611 107 EFYTFGGLSA-SLEM---LKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRS------K--A------------ 162 (688)
Q Consensus 107 ~~~~~g~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~------~--~------------ 162 (688)
|.+|.|.+++ |+.| +..+..|+..++..+..++...+...|++++++..+.... . .
T Consensus 358 g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (659)
T TIGR00954 358 LEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSN 437 (659)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 6788888776 5655 5677999999999999999999999999988865221110 0 0
Q ss_pred -----cccccCCCCcccccc-cccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 163 -----EARVDGSTGVKFSDV-AGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 163 -----~~~~~~~~~v~f~dV-~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
.........++|++| +.+...+..++++ ++.++++..++|+||+|+|||||++.+++.
T Consensus 438 ~~~~~~~~~~~~~~i~~~nv~~~~~~~~~il~~i-----------sl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl 501 (659)
T TIGR00954 438 LVPGRGIVEYQDNGIKFENIPLVTPNGDVLIESL-----------SFEVPSGNHLLICGPNGCGKSSLFRILGEL 501 (659)
T ss_pred ccccccccccCCCeEEEEeeEEECCCCCeeeecc-----------eEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 000112234677777 3332111112222 556778888999999999999999999984
No 219
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.00 E-value=3.3e-09 Score=121.71 Aligned_cols=208 Identities=23% Similarity=0.299 Sum_probs=125.9
Q ss_pred CCCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhH
Q 005611 169 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFV 245 (688)
Q Consensus 169 ~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~ 245 (688)
....+|++++|.+...+.+.+.+..+. +....|+|+|++||||+++|+++.... +.||+.++|..+.
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~a----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVVA----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHHh----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 345789999999999888887766543 234579999999999999999999864 5799999998764
Q ss_pred HHHhhh-----hh-------HHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHh
Q 005611 246 EVLVGV-----GS-------ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIEL 313 (688)
Q Consensus 246 ~~~~g~-----~~-------~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~l 313 (688)
+..... .. ......+.. .+...|||||++.+.... + ..|+..+
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~GtL~ldei~~L~~~~-------------------Q---~~Ll~~l 314 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFEL---ADGGTLFLDEIGEISPAF-------------------Q---AKLLRVL 314 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCcccc---cCCCeEEEechhhCCHHH-------------------H---HHHHHHH
Confidence 432211 00 000111222 234589999999975432 2 3333333
Q ss_pred cCC-----CC----CCcEEEEEecCCCC-------cCCccccCCCccceeeeccCCChhhHH----HHHHHHhccCc---
Q 005611 314 DGF-----DT----GKGVIFLAATNRRD-------LLDPALLRPGRFDRKIRIRAPNAKGRT----EILKIHASKVK--- 370 (688)
Q Consensus 314 d~~-----~~----~~~viVIaaTN~~~-------~Ld~aL~r~gRf~~~I~i~~Pd~~eR~----~Il~~~l~~~~--- 370 (688)
+.- .. ..++.+|++|+..- .+.+.|.. |+. .+.+..|+..+|. .|+++++.+..
T Consensus 315 ~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~ 391 (534)
T TIGR01817 315 QEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RIN-VVPIFLPPLRERREDIPLLAEAFLEKFNREN 391 (534)
T ss_pred hcCcEEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--Hhc-CCeeeCCCcccccccHHHHHHHHHHHHHHHc
Confidence 221 11 12478888887532 12222222 222 3455556655553 45555554321
Q ss_pred -CCCccC---HHHHHhh-CCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHH
Q 005611 371 -MSDSVD---LSSYAKN-LPGWTGARLAQLVQEAALVAVRKGHESILSSDMDD 418 (688)
Q Consensus 371 -~~~~~d---l~~la~~-t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~ 418 (688)
....++ +..+... ++| +.++|++++++|...+ ....|+.+|+..
T Consensus 392 ~~~~~~s~~a~~~L~~~~WPG-NvrEL~~v~~~a~~~~---~~~~I~~~~l~~ 440 (534)
T TIGR01817 392 GRPLTITPSAIRVLMSCKWPG-NVRELENCLERTATLS---RSGTITRSDFSC 440 (534)
T ss_pred CCCCCCCHHHHHHHHhCCCCC-hHHHHHHHHHHHHHhC---CCCcccHHHCch
Confidence 112222 4445555 355 8999999999988665 345788888643
No 220
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=3.8e-09 Score=113.15 Aligned_cols=156 Identities=21% Similarity=0.309 Sum_probs=105.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCC------------------------EEEeeCchhHHHHhhhhhHHHHHHHH
Q 005611 206 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVP------------------------FYQMAGSEFVEVLVGVGSARIRDLFK 261 (688)
Q Consensus 206 ~~~~gvLL~GppGtGKT~La~alA~~~~~~------------------------~~~v~~~~~~~~~~g~~~~~~r~~f~ 261 (688)
+.++.+||+||+|+|||++|+++|+.+.+. ++.+...+- . ...+-..+|.+..
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~--~~i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-D--KTIKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-C--CCCCHHHHHHHHH
Confidence 567789999999999999999999977542 222211000 0 0123356677665
Q ss_pred HHHh----CCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCcc
Q 005611 262 RAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPA 337 (688)
Q Consensus 262 ~A~~----~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~a 337 (688)
.+.. ....|++|||+|.+.. ...|.||+.++. ++.++++|.+|+.++.+.|.
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m~~----------------------~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~T 152 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAMNR----------------------NAANALLKSLEE--PSGDTVLLLISHQPSRLLPT 152 (328)
T ss_pred HHhhccccCCCeEEEECChhhCCH----------------------HHHHHHHHHHhC--CCCCeEEEEEECChhhCcHH
Confidence 5543 3456999999998653 234888888884 45678888899999999999
Q ss_pred ccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccCHHHHHhhCCCCCHHHHHHH
Q 005611 338 LLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQL 395 (688)
Q Consensus 338 L~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~G~s~~dL~~l 395 (688)
+++ |+. .+.|++|+.++-.+.++..... ..+.+...+++...| ++.....+
T Consensus 153 I~S--Rc~-~~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~G-sp~~A~~l 203 (328)
T PRK05707 153 IKS--RCQ-QQACPLPSNEESLQWLQQALPE---SDERERIELLTLAGG-SPLRALQL 203 (328)
T ss_pred HHh--hce-eeeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCC-CHHHHHHH
Confidence 999 865 5899999999888888765321 122234455666666 55444444
No 221
>PLN03232 ABC transporter C family member; Provisional
Probab=98.99 E-value=6.4e-10 Score=140.93 Aligned_cols=158 Identities=16% Similarity=0.113 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc---ccccc--ccCCCCcccccc-cccHHH-HHH
Q 005611 114 LSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRS---KAEAR--VDGSTGVKFSDV-AGIDEA-VEE 186 (688)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---~~~~~--~~~~~~v~f~dV-~G~~~~-k~~ 186 (688)
+..++.|...+..|+..+...+...+....+.+|+.++.+....... ..... -+..+.+.|+|| +.|++. +..
T Consensus 1172 ~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~v 1251 (1495)
T PLN03232 1172 MGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPV 1251 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcc
Confidence 33467788888888888888888888888888898887764322111 00000 122346999999 677432 223
Q ss_pred HHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcC------------------------------CCE
Q 005611 187 LQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG------------------------------VPF 236 (688)
Q Consensus 187 L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~------------------------------~~~ 236 (688)
|+++ ++.++++..+.|+|++|+|||||++++.+-.. -|+
T Consensus 1252 L~~i-----------sl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~ 1320 (1495)
T PLN03232 1252 LHGL-----------SFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPV 1320 (1495)
T ss_pred cccc-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCe
Confidence 4333 66788899999999999999999999998220 011
Q ss_pred EE-------------ee------------CchhH-------HHHhhh------hhHHHHHHHHHHHhCCCeEEEEcccch
Q 005611 237 YQ-------------MA------------GSEFV-------EVLVGV------GSARIRDLFKRAKVNKPSVIFIDEIDA 278 (688)
Q Consensus 237 ~~-------------v~------------~~~~~-------~~~~g~------~~~~~r~~f~~A~~~~p~IL~LDEiD~ 278 (688)
+. .+ ..++. +..+|+ +++++|..++||..++|.||++||+++
T Consensus 1321 LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATS 1400 (1495)
T PLN03232 1321 LFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATA 1400 (1495)
T ss_pred eeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence 00 00 00111 111121 678999999999999999999999998
Q ss_pred hhhh
Q 005611 279 LATR 282 (688)
Q Consensus 279 l~~~ 282 (688)
..+.
T Consensus 1401 aLD~ 1404 (1495)
T PLN03232 1401 SVDV 1404 (1495)
T ss_pred cCCH
Confidence 5543
No 222
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.98 E-value=3.9e-09 Score=120.24 Aligned_cols=206 Identities=24% Similarity=0.330 Sum_probs=124.7
Q ss_pred ccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhHHHHh
Q 005611 173 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLV 249 (688)
Q Consensus 173 ~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~~~~~ 249 (688)
++.+++|....++.+.+.+..+. ..+..|+|+|++||||+++|+++.... +.||+.++|..+.+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a----------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA----------ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 67889999999888888776543 334579999999999999999998864 57999999987754322
Q ss_pred -----hhhh-------HHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCC-
Q 005611 250 -----GVGS-------ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF- 316 (688)
Q Consensus 250 -----g~~~-------~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~- 316 (688)
|... ......|+.| +...|||||+|.+.... + ..|+..++.-
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~~~~-------------------Q---~~Ll~~l~~~~ 309 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELPLAL-------------------Q---AKLLRVLQYGE 309 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCCHHH-------------------H---HHHHHHHhcCC
Confidence 1100 0011234433 34589999999976432 2 2333333211
Q ss_pred ----C----CCCcEEEEEecCCCC-------cCCccccCCCccceeeeccCCChhhHHH----HHHHHhccC----cC-C
Q 005611 317 ----D----TGKGVIFLAATNRRD-------LLDPALLRPGRFDRKIRIRAPNAKGRTE----ILKIHASKV----KM-S 372 (688)
Q Consensus 317 ----~----~~~~viVIaaTN~~~-------~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~----Il~~~l~~~----~~-~ 372 (688)
. ...++.+|++||..- .+.+.|.. |+. .+.+..|+..+|.+ ++++++++. +. .
T Consensus 310 ~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~ 386 (509)
T PRK05022 310 IQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRS 386 (509)
T ss_pred EeeCCCCcceecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCC
Confidence 1 123578899988642 12222322 222 45677787777754 444444332 11 1
Q ss_pred CccC---HHHHHhh-CCCCCHHHHHHHHHHHHHHHHHhCCc---cccHHHHH
Q 005611 373 DSVD---LSSYAKN-LPGWTGARLAQLVQEAALVAVRKGHE---SILSSDMD 417 (688)
Q Consensus 373 ~~~d---l~~la~~-t~G~s~~dL~~lv~~A~~~A~~~~~~---~I~~~di~ 417 (688)
..++ +..|.+. .+| +.++|++++++|+..+.....+ .|+.+|+.
T Consensus 387 ~~~s~~a~~~L~~y~WPG-NvrEL~~~i~ra~~~~~~~~~~~~~~i~~~~l~ 437 (509)
T PRK05022 387 LRLSPAAQAALLAYDWPG-NVRELEHVISRAALLARARGAGRIVTLEAQHLD 437 (509)
T ss_pred CCCCHHHHHHHHhCCCCC-cHHHHHHHHHHHHHhcCCCccCccceecHHHcC
Confidence 1222 3444444 445 8999999999999877432111 45555543
No 223
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.98 E-value=7.7e-09 Score=111.11 Aligned_cols=192 Identities=21% Similarity=0.269 Sum_probs=116.4
Q ss_pred ccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhHHHH-
Q 005611 173 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVL- 248 (688)
Q Consensus 173 ~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~~~~- 248 (688)
.+++++|.+...+.+.+.+..+. +.+..|+|+|++||||+++|+++.... +.||+.++|..+.+..
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 36778999998888887766542 334579999999999999999997654 5799999998764321
Q ss_pred ----hhhhh-------HHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCC-
Q 005611 249 ----VGVGS-------ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF- 316 (688)
Q Consensus 249 ----~g~~~-------~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~- 316 (688)
.|... ......+..| ....|||||+|.+.... + ..|+..++.-
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L~~~~-------------------Q---~~L~~~l~~~~ 128 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPMLV-------------------Q---EKLLRVIEYGE 128 (326)
T ss_pred HHHHccccccccCCcccccCCchhcc---CCCeEEeCChhhCCHHH-------------------H---HHHHHHHhcCc
Confidence 12100 0112234333 34589999999976432 2 2333333211
Q ss_pred -C-------CCCcEEEEEecCCC-------CcCCccccCCCccceeeeccCCChhhHHH----HHHHHhcc----CcCC-
Q 005611 317 -D-------TGKGVIFLAATNRR-------DLLDPALLRPGRFDRKIRIRAPNAKGRTE----ILKIHASK----VKMS- 372 (688)
Q Consensus 317 -~-------~~~~viVIaaTN~~-------~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~----Il~~~l~~----~~~~- 372 (688)
. .+.++.+|++|+.. ..+.+.|.. ||. .+.+..|+..+|.+ ++++++.+ .+..
T Consensus 129 ~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~ 205 (326)
T PRK11608 129 LERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPL 205 (326)
T ss_pred EEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCC
Confidence 1 11247888888763 134445554 553 34566677666644 45555432 2211
Q ss_pred -CccC---HHHHHhh-CCCCCHHHHHHHHHHHHHHH
Q 005611 373 -DSVD---LSSYAKN-LPGWTGARLAQLVQEAALVA 403 (688)
Q Consensus 373 -~~~d---l~~la~~-t~G~s~~dL~~lv~~A~~~A 403 (688)
..++ +..+.+. .+| +.++|+++++++...+
T Consensus 206 ~~~~s~~al~~L~~y~WPG-NvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 206 FPGFTERARETLLNYRWPG-NIRELKNVVERSVYRH 240 (326)
T ss_pred CCCCCHHHHHHHHhCCCCc-HHHHHHHHHHHHHHhc
Confidence 1233 3444444 445 8999999999988654
No 224
>PRK04132 replication factor C small subunit; Provisional
Probab=98.98 E-value=5.9e-09 Score=122.65 Aligned_cols=172 Identities=20% Similarity=0.204 Sum_probs=124.7
Q ss_pred eEEEEc--CCCChHHHHHHHHHHhc-----CCCEEEeeCchhHHHHhhhhhHHHHHHHHHHHhC------CCeEEEEccc
Q 005611 210 GVLLEG--PPGCGKTLVAKAIAGEA-----GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVN------KPSVIFIDEI 276 (688)
Q Consensus 210 gvLL~G--ppGtGKT~La~alA~~~-----~~~~~~v~~~~~~~~~~g~~~~~~r~~f~~A~~~------~p~IL~LDEi 276 (688)
.-+..| |++.||||+|+++|+++ +.+++.+++++..+ ...+|..+..+... ...|+||||+
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEa 639 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEA 639 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECc
Confidence 345668 99999999999999997 56799999997422 23456555544322 2369999999
Q ss_pred chhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChh
Q 005611 277 DALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAK 356 (688)
Q Consensus 277 D~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~ 356 (688)
|.+... ..+.|+..|+. .+.++.+|.+||.+..+.+++++ |+ ..+.|++|+.+
T Consensus 640 D~Lt~~----------------------AQnALLk~lEe--p~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~ 692 (846)
T PRK04132 640 DALTQD----------------------AQQALRRTMEM--FSSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDE 692 (846)
T ss_pred ccCCHH----------------------HHHHHHHHhhC--CCCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHH
Confidence 997532 22667777763 34678888899999999999998 74 68999999999
Q ss_pred hHHHHHHHHhccCcCC-CccCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 005611 357 GRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 420 (688)
Q Consensus 357 eR~~Il~~~l~~~~~~-~~~dl~~la~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al 420 (688)
+....++..+.+.++. ++..+..++..+.| +.+...++++.+... ...|+.+++....
T Consensus 693 ~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~~~~-----~~~It~~~V~~~~ 751 (846)
T PRK04132 693 DIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAAAL-----DDKITDENVFLVA 751 (846)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh-----cCCCCHHHHHHHh
Confidence 9998888887654443 33357888888887 777777777665432 2457777765543
No 225
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.97 E-value=6.9e-10 Score=127.73 Aligned_cols=162 Identities=15% Similarity=0.067 Sum_probs=101.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccccCCCCcccccc-cccHHHHHHHH
Q 005611 110 TFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRSKAEARVDGSTGVKFSDV-AGIDEAVEELQ 188 (688)
Q Consensus 110 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~f~dV-~G~~~~k~~L~ 188 (688)
+.+....+..++..+..|+..+......++....+..|+.++...............+....+.|++| ++|+.....++
T Consensus 261 ~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~l~ 340 (547)
T PRK10522 261 DTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFPRPQAFPDWQTLELRNVTFAYQDNGFSVG 340 (547)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCcCceEEEEEEEEEeCCCCeEEe
Confidence 33444445555556778999999998888888888888877654321111010000111246888888 56642111222
Q ss_pred HHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCC----------------------CEEEe-------
Q 005611 189 ELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV----------------------PFYQM------- 239 (688)
Q Consensus 189 ~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~----------------------~~~~v------- 239 (688)
++ ++.++++..+.|+||+|+|||||++.+++.... .+-.+
T Consensus 341 ~i-----------~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf 409 (547)
T PRK10522 341 PI-----------NLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLF 409 (547)
T ss_pred cc-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHH
Confidence 22 566788889999999999999999999983310 00000
Q ss_pred ------eCchh--------HHH-----Hh--------h---hhhHHHHHHHHHHHhCCCeEEEEcccchhhhh
Q 005611 240 ------AGSEF--------VEV-----LV--------G---VGSARIRDLFKRAKVNKPSVIFIDEIDALATR 282 (688)
Q Consensus 240 ------~~~~~--------~~~-----~~--------g---~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~ 282 (688)
+..+. .+. .. | .+++++|..++||..++|+|+++||.++-.+.
T Consensus 410 ~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~ 482 (547)
T PRK10522 410 DQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDP 482 (547)
T ss_pred HHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCH
Confidence 00000 000 00 1 15788999999999999999999999885543
No 226
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.97 E-value=5.2e-09 Score=112.42 Aligned_cols=188 Identities=23% Similarity=0.277 Sum_probs=111.2
Q ss_pred ccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhHHHHh----
Q 005611 177 VAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLV---- 249 (688)
Q Consensus 177 V~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~~~~~---- 249 (688)
++|.....+.+.+.+..+. .....|||+|++||||+++|+++.... +.||+.++|..+.+...
T Consensus 1 liG~S~~m~~~~~~~~~~a----------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA----------PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 3577777777766655432 234579999999999999999997654 57999999986543321
Q ss_pred -hhh-------hHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCC-----
Q 005611 250 -GVG-------SARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF----- 316 (688)
Q Consensus 250 -g~~-------~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~----- 316 (688)
|.. .......|..| +...|||||++.+.... + ..|+..++.-
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L~~~~-------------------Q---~~Ll~~l~~~~~~~~ 125 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATASLLV-------------------Q---EKLLRVIEYGEFERV 125 (329)
T ss_pred hccccccccCcccccCCchhhC---CCCEEEeCChHhCCHHH-------------------H---HHHHHHHHcCcEEec
Confidence 110 00112234443 34589999999875432 2 2333333211
Q ss_pred ----CCCCcEEEEEecCCCC-------cCCccccCCCccceeeeccCCChhhHHH----HHHHHhcc----CcCC--Ccc
Q 005611 317 ----DTGKGVIFLAATNRRD-------LLDPALLRPGRFDRKIRIRAPNAKGRTE----ILKIHASK----VKMS--DSV 375 (688)
Q Consensus 317 ----~~~~~viVIaaTN~~~-------~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~----Il~~~l~~----~~~~--~~~ 375 (688)
....++.+|++||..- .+.+.|.. |+. .+.+..|+..+|.+ ++++++.+ .+.. ..+
T Consensus 126 g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~l 202 (329)
T TIGR02974 126 GGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGF 202 (329)
T ss_pred CCCceeccceEEEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCc
Confidence 1124578899988631 23344444 443 35566677766654 44444432 2211 122
Q ss_pred C---HHHHHhhC-CCCCHHHHHHHHHHHHHHH
Q 005611 376 D---LSSYAKNL-PGWTGARLAQLVQEAALVA 403 (688)
Q Consensus 376 d---l~~la~~t-~G~s~~dL~~lv~~A~~~A 403 (688)
+ +..|.... +| +.++|++++++++..+
T Consensus 203 s~~a~~~L~~y~WPG-NvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 203 TPQAREQLLEYHWPG-NVRELKNVVERSVYRH 233 (329)
T ss_pred CHHHHHHHHhCCCCc-hHHHHHHHHHHHHHhC
Confidence 2 44444443 45 8999999999988765
No 227
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.96 E-value=3e-08 Score=100.53 Aligned_cols=130 Identities=25% Similarity=0.300 Sum_probs=88.8
Q ss_pred CCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCC-------------CCc
Q 005611 267 KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNR-------------RDL 333 (688)
Q Consensus 267 ~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~-------------~~~ 333 (688)
-|.+|||||++-+- - .++.-|-..++ ++-.-+||.+||+ |.-
T Consensus 296 vPGVLFIDEVhMLD-------------------i---EcFTyL~kalE---S~iaPivifAsNrG~~~irGt~d~~sPhG 350 (456)
T KOG1942|consen 296 VPGVLFIDEVHMLD-------------------I---ECFTYLHKALE---SPIAPIVIFASNRGMCTIRGTEDILSPHG 350 (456)
T ss_pred cCcceEeeehhhhh-------------------h---HHHHHHHHHhc---CCCCceEEEecCCcceeecCCcCCCCCCC
Confidence 47899999988642 1 22333334443 2333466777776 233
Q ss_pred CCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCcc-CHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCcccc
Q 005611 334 LDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV-DLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESIL 412 (688)
Q Consensus 334 Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~-dl~~la~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~ 412 (688)
+++.+++ |+ ..|..-+++.++-++|++...+..++.-+. .+..++.....-|-+-..+++.-|...|...+++.|.
T Consensus 351 ip~dllD--Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~ 427 (456)
T KOG1942|consen 351 IPPDLLD--RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEIS 427 (456)
T ss_pred CCHHHhh--he-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceee
Confidence 5666666 54 366677888999999999988766555332 3566666655557777778888888899889999999
Q ss_pred HHHHHHHHHhhc
Q 005611 413 SSDMDDAVDRLT 424 (688)
Q Consensus 413 ~~di~~Al~~~~ 424 (688)
.+|++++-+-..
T Consensus 428 v~dvee~~~Lf~ 439 (456)
T KOG1942|consen 428 VEDVEEVTELFL 439 (456)
T ss_pred cccHHHHHHHHH
Confidence 999998866544
No 228
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.96 E-value=6.9e-09 Score=102.17 Aligned_cols=203 Identities=19% Similarity=0.272 Sum_probs=117.6
Q ss_pred cccCCCCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-----CEEEe
Q 005611 165 RVDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV-----PFYQM 239 (688)
Q Consensus 165 ~~~~~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~-----~~~~v 239 (688)
+++...+..++||+|.++..+.|+-+...- +. .+++|.||||+||||-+.++|+++=- -++..
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl~via~~g-----------nm-P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLEL 84 (333)
T KOG0991|consen 17 WVEKYRPSVLQDIVGNEDTVERLSVIAKEG-----------NM-PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLEL 84 (333)
T ss_pred HHHhhCchHHHHhhCCHHHHHHHHHHHHcC-----------CC-CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhc
Confidence 456667889999999999999997775431 11 25899999999999999999998722 24555
Q ss_pred eCchhHHHHhhhhhHHHH---HHHHHHHhCCC----eEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHH
Q 005611 240 AGSEFVEVLVGVGSARIR---DLFKRAKVNKP----SVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIE 312 (688)
Q Consensus 240 ~~~~~~~~~~g~~~~~~r---~~f~~A~~~~p----~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ 312 (688)
+.++-. |-..+| ..|++-+..-| .|++|||+|++.... ++.+...++.
T Consensus 85 NASdeR------GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gA-------------------QQAlRRtMEi 139 (333)
T KOG0991|consen 85 NASDER------GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGA-------------------QQALRRTMEI 139 (333)
T ss_pred cCcccc------ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHH-------------------HHHHHHHHHH
Confidence 555421 122223 34555444433 499999999975432 1222222211
Q ss_pred hcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCcc-CHHHHHhhCCCCCHHH
Q 005611 313 LDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV-DLSSYAKNLPGWTGAR 391 (688)
Q Consensus 313 ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~-dl~~la~~t~G~s~~d 391 (688)
+ .++..+..+||..+.+-+.+.+ |+. .+.+...+..+...-+....+..++.-.. -++.+.-...| |
T Consensus 140 ---y--S~ttRFalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G----D 207 (333)
T KOG0991|consen 140 ---Y--SNTTRFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG----D 207 (333)
T ss_pred ---H--cccchhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc----h
Confidence 1 2345566789988888777777 543 44444444444333333333322222111 25555544444 5
Q ss_pred HHHHHHHHHHHHHHhCCccccHHHHHH
Q 005611 392 LAQLVQEAALVAVRKGHESILSSDMDD 418 (688)
Q Consensus 392 L~~lv~~A~~~A~~~~~~~I~~~di~~ 418 (688)
+++.+|.-. +.-.+-..++.+.+-.
T Consensus 208 MRQalNnLQ--st~~g~g~Vn~enVfK 232 (333)
T KOG0991|consen 208 MRQALNNLQ--STVNGFGLVNQENVFK 232 (333)
T ss_pred HHHHHHHHH--HHhccccccchhhhhh
Confidence 665555533 2233445555555443
No 229
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.95 E-value=1.5e-09 Score=122.30 Aligned_cols=171 Identities=22% Similarity=0.346 Sum_probs=96.6
Q ss_pred ccceeccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccc-c-----c--ccccccC--CC
Q 005611 101 ILSKFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSR-S-----K--AEARVDG--ST 170 (688)
Q Consensus 101 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~-----~--~~~~~~~--~~ 170 (688)
.-..+.|.+++|+++.--..+.++..-+.-+...+..+..=++...|+.++....+..+ . . ....... ..
T Consensus 312 ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (604)
T COG4178 312 APRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADH 391 (604)
T ss_pred cHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccc
Confidence 44467889999998855555544444444333333333333344444444443322111 0 0 0000011 46
Q ss_pred Ccccccccc-cHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc-------CCC----EEE
Q 005611 171 GVKFSDVAG-IDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-------GVP----FYQ 238 (688)
Q Consensus 171 ~v~f~dV~G-~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~-------~~~----~~~ 238 (688)
.++|+|+-= ..+...-+++. ++.++++..+++.||||||||+|.|++|+-- ..| .+.
T Consensus 392 ~i~~~nl~l~~p~~~~ll~~l-----------~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lf 460 (604)
T COG4178 392 GITLENLSLRTPDGQTLLSEL-----------NFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLF 460 (604)
T ss_pred eeEEeeeeEECCCCCeeeccc-----------eeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEE
Confidence 788888721 11111111111 5678889999999999999999999999821 111 111
Q ss_pred e------------------------eCchhHH------------HHhh--------hhhHHHHHHHHHHHhCCCeEEEEc
Q 005611 239 M------------------------AGSEFVE------------VLVG--------VGSARIRDLFKRAKVNKPSVIFID 274 (688)
Q Consensus 239 v------------------------~~~~~~~------------~~~g--------~~~~~~r~~f~~A~~~~p~IL~LD 274 (688)
+ +..++.+ ..-+ .+++++|.+|+|...++|.++|||
T Consensus 461 lpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LD 540 (604)
T COG4178 461 LPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLD 540 (604)
T ss_pred ecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEe
Confidence 1 1111111 1100 167789999999999999999999
Q ss_pred ccchhhhh
Q 005611 275 EIDALATR 282 (688)
Q Consensus 275 EiD~l~~~ 282 (688)
|+++..+.
T Consensus 541 EATsALDe 548 (604)
T COG4178 541 EATSALDE 548 (604)
T ss_pred cchhccCh
Confidence 99985543
No 230
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.94 E-value=6.8e-09 Score=118.33 Aligned_cols=208 Identities=18% Similarity=0.291 Sum_probs=123.9
Q ss_pred CCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhHH
Q 005611 170 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE 246 (688)
Q Consensus 170 ~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~~ 246 (688)
...+|++++|.....+.+.+.+..+. ..+..|+|+|++||||+++|+++.... +.||+.++|..+.+
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A----------~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLA----------MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 45789999999988777766655432 223469999999999999999987654 47999999987654
Q ss_pred HHh-----hhhh-------HHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHh-
Q 005611 247 VLV-----GVGS-------ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIEL- 313 (688)
Q Consensus 247 ~~~-----g~~~-------~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~l- 313 (688)
... |... ......|+.| +...|||||++.+.... +..+-.+++.-
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L~~~~-------------------Q~~Ll~~l~~~~ 326 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEMSPRM-------------------QAKLLRFLNDGT 326 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhCCHHH-------------------HHHHHHHHhcCC
Confidence 322 2110 1112334443 34589999999975432 22222333221
Q ss_pred -cCCC----CCCcEEEEEecCCCC-------cCCccccCCCccceeeeccCCChhhHHH----HHHHHhc----cCcCC-
Q 005611 314 -DGFD----TGKGVIFLAATNRRD-------LLDPALLRPGRFDRKIRIRAPNAKGRTE----ILKIHAS----KVKMS- 372 (688)
Q Consensus 314 -d~~~----~~~~viVIaaTN~~~-------~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~----Il~~~l~----~~~~~- 372 (688)
.... ...++.||++|+.+- .+.+.|.. |+. .+.+..|+..+|.+ ++++++. +.+..
T Consensus 327 ~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~ 403 (520)
T PRK10820 327 FRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPR 403 (520)
T ss_pred cccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCC
Confidence 1111 123467888887642 13333443 443 36677777777663 3333333 22221
Q ss_pred CccC---HHHHHhh-CCCCCHHHHHHHHHHHHHHHHHhCCccccHHHH
Q 005611 373 DSVD---LSSYAKN-LPGWTGARLAQLVQEAALVAVRKGHESILSSDM 416 (688)
Q Consensus 373 ~~~d---l~~la~~-t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di 416 (688)
..++ +..|.+. ++| +.++|++++.+|...+ ....|+.+|+
T Consensus 404 ~~ls~~a~~~L~~y~WPG-NvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 404 PKLAADLNTVLTRYGWPG-NVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred CCcCHHHHHHHhcCCCCC-HHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 1222 3444444 455 8899999999988765 3456777775
No 231
>PLN03130 ABC transporter C family member; Provisional
Probab=98.94 E-value=1.1e-09 Score=139.03 Aligned_cols=160 Identities=18% Similarity=0.148 Sum_probs=96.6
Q ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc---ccccc--ccCCCCcccccc-cccHH
Q 005611 109 YTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRS---KAEAR--VDGSTGVKFSDV-AGIDE 182 (688)
Q Consensus 109 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---~~~~~--~~~~~~v~f~dV-~G~~~ 182 (688)
.+.|.+.++..++. .++..+...+........+..|+.++.+..+.... ..... -+..+.+.|+|| +.|.+
T Consensus 1173 ~~~G~~ls~~~~~~---~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~ 1249 (1622)
T PLN03130 1173 STMGLLLSYALNIT---SLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRP 1249 (1622)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCC
Confidence 34555555544444 44444444445556667777787776554222110 00000 123457999999 67743
Q ss_pred H-HHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcC----------C-----------------
Q 005611 183 A-VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG----------V----------------- 234 (688)
Q Consensus 183 ~-k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~----------~----------------- 234 (688)
. ...|+++ ++.++++..+.|+|++|+|||||+++|.+-.. .
T Consensus 1250 ~~~~VL~~i-----------s~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiV 1318 (1622)
T PLN03130 1250 ELPPVLHGL-----------SFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGII 1318 (1622)
T ss_pred CCCceecce-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEE
Confidence 2 1233333 66788999999999999999999999998321 0
Q ss_pred ---CEE-------------Eee------------CchhH-------HHHhhh------hhHHHHHHHHHHHhCCCeEEEE
Q 005611 235 ---PFY-------------QMA------------GSEFV-------EVLVGV------GSARIRDLFKRAKVNKPSVIFI 273 (688)
Q Consensus 235 ---~~~-------------~v~------------~~~~~-------~~~~g~------~~~~~r~~f~~A~~~~p~IL~L 273 (688)
|++ ..+ ..++. +..+|+ +++++|..++||..++|.||+|
T Consensus 1319 pQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILIL 1398 (1622)
T PLN03130 1319 PQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVL 1398 (1622)
T ss_pred CCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 000 000 00111 111222 6789999999999999999999
Q ss_pred cccchhhhh
Q 005611 274 DEIDALATR 282 (688)
Q Consensus 274 DEiD~l~~~ 282 (688)
||+++-.+.
T Consensus 1399 DEATSaLD~ 1407 (1622)
T PLN03130 1399 DEATAAVDV 1407 (1622)
T ss_pred ECCCCCCCH
Confidence 999985543
No 232
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.93 E-value=1.8e-08 Score=107.78 Aligned_cols=147 Identities=28% Similarity=0.378 Sum_probs=96.7
Q ss_pred cccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcC----------------------
Q 005611 176 DVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG---------------------- 233 (688)
Q Consensus 176 dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~---------------------- 233 (688)
++.+.++....+...+..- .+.|+.+||+||||+|||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~----------~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~ 71 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES----------GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAG 71 (325)
T ss_pred CcccchhHHHHHHHHHHhc----------CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhc
Confidence 4666777766666554321 13444699999999999999999999876
Q ss_pred --CCEEEeeCchhHHHHhhhhhHHHHHHHHHHHh----CCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHH
Q 005611 234 --VPFYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLN 307 (688)
Q Consensus 234 --~~~~~v~~~~~~~~~~g~~~~~~r~~f~~A~~----~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 307 (688)
-.++.++.++-...- .....++.+...... ....|++|||+|.+... ..+
T Consensus 72 ~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~----------------------A~n 127 (325)
T COG0470 72 NHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTED----------------------AAN 127 (325)
T ss_pred CCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHH----------------------HHH
Confidence 355666655432210 123344444433322 23579999999997643 236
Q ss_pred HHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHH
Q 005611 308 QLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEI 361 (688)
Q Consensus 308 ~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~I 361 (688)
.++..++ .++.+..+|.+||.++.+-+.+++ |. ..++|++|+...+...
T Consensus 128 allk~lE--ep~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~ 176 (325)
T COG0470 128 ALLKTLE--EPPKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAW 176 (325)
T ss_pred HHHHHhc--cCCCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHH
Confidence 6777776 445677888889999999999988 64 5778877654444433
No 233
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.93 E-value=6.9e-09 Score=121.60 Aligned_cols=208 Identities=22% Similarity=0.330 Sum_probs=125.6
Q ss_pred CcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhHHH
Q 005611 171 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV 247 (688)
Q Consensus 171 ~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~~~ 247 (688)
..+|++++|.+...+++.+.+..+. +.+..|+|+|++||||+++|+++.+.. +.||+.++|..+...
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a----------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAA----------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHh----------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 4579999999988887776655432 234469999999999999999998864 579999999876432
Q ss_pred -----Hhhhh--h--HHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCC--
Q 005611 248 -----LVGVG--S--ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF-- 316 (688)
Q Consensus 248 -----~~g~~--~--~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~-- 316 (688)
+.|.. . ......|+. .+...|||||++.+.... + ..|+..++.-
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~---a~~GtL~ldei~~l~~~~-------------------Q---~~Ll~~l~~~~~ 445 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFEL---AHGGTLFLEKVEYLSPEL-------------------Q---SALLQVLKTGVI 445 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeE---CCCCEEEEcChhhCCHHH-------------------H---HHHHHHHhcCcE
Confidence 22211 0 001112332 234589999999875432 2 2333333211
Q ss_pred ---CC----CCcEEEEEecCCCCcCCccccCCCccce-------eeeccCCChhhHHH----HHHHHhccC----cCCCc
Q 005611 317 ---DT----GKGVIFLAATNRRDLLDPALLRPGRFDR-------KIRIRAPNAKGRTE----ILKIHASKV----KMSDS 374 (688)
Q Consensus 317 ---~~----~~~viVIaaTN~~~~Ld~aL~r~gRf~~-------~I~i~~Pd~~eR~~----Il~~~l~~~----~~~~~ 374 (688)
.. +-++.+|+|||..- . .+...|+|.. .+.+..|+..+|.+ ++++++.+. +....
T Consensus 446 ~~~~~~~~~~~~~riI~~t~~~l--~-~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~ 522 (638)
T PRK11388 446 TRLDSRRLIPVDVRVIATTTADL--A-MLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLK 522 (638)
T ss_pred EeCCCCceEEeeEEEEEeccCCH--H-HHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCC
Confidence 11 11577899888632 1 1112233321 56677788777753 444444332 11112
Q ss_pred cC---HHHHHhhC-CCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 005611 375 VD---LSSYAKNL-PGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 420 (688)
Q Consensus 375 ~d---l~~la~~t-~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al 420 (688)
++ +..|.+.. +| +.++|+++++++...+ ....|+.+|+...+
T Consensus 523 ~s~~a~~~L~~y~WPG-NvreL~~~l~~~~~~~---~~~~i~~~~lp~~~ 568 (638)
T PRK11388 523 IDDDALARLVSYRWPG-NDFELRSVIENLALSS---DNGRIRLSDLPEHL 568 (638)
T ss_pred cCHHHHHHHHcCCCCC-hHHHHHHHHHHHHHhC---CCCeecHHHCchhh
Confidence 22 44454444 45 8999999999988654 34578888876555
No 234
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=5.3e-09 Score=112.50 Aligned_cols=149 Identities=20% Similarity=0.241 Sum_probs=104.4
Q ss_pred ccccccc-cHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC----------------
Q 005611 173 KFSDVAG-IDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP---------------- 235 (688)
Q Consensus 173 ~f~dV~G-~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~---------------- 235 (688)
.|++|.| ++.+++.|++.+.. -+.++.+||+||+|+||+++|+++|+...++
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-----------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-----------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 4778877 88888888877542 2566778999999999999999999976432
Q ss_pred --------EEEeeCchhHHHHhhhhhHHHHHHHHHHH----hCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHH
Q 005611 236 --------FYQMAGSEFVEVLVGVGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERE 303 (688)
Q Consensus 236 --------~~~v~~~~~~~~~~g~~~~~~r~~f~~A~----~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~ 303 (688)
+..+... .. ..+-..+|...+.+. .....|++|||+|.+...
T Consensus 72 ~~~~~hpD~~~i~~~---~~--~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~--------------------- 125 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---GQ--SIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTAS--------------------- 125 (329)
T ss_pred HhcCCCCCEEEeccc---cc--cCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHH---------------------
Confidence 1111110 00 012345666655443 223469999999886432
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHH
Q 005611 304 TTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKI 364 (688)
Q Consensus 304 ~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~ 364 (688)
..|.|+..++. +++++++|.+|+.++.+.|.+++ |. ..+++++|+.++..+.++.
T Consensus 126 -a~NaLLK~LEE--Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 126 -AANSLLKFLEE--PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred -HHHHHHHHhcC--CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 33788888884 45667777788888999999998 64 5889999999887777753
No 235
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=2.2e-09 Score=110.13 Aligned_cols=107 Identities=33% Similarity=0.475 Sum_probs=73.4
Q ss_pred ccccHHHHHHHHHHHH-Hhc---ChhhhhccCCCCC-ceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHHH-Hhh
Q 005611 177 VAGIDEAVEELQELVR-YLK---NPELFDKMGIKPP-HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV-LVG 250 (688)
Q Consensus 177 V~G~~~~k~~L~~ii~-~l~---~~~~~~~~g~~~~-~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~~-~~g 250 (688)
|+|++.+|+.|.-.+. .++ +.+. +-..... .++||.||+|||||.||+.+|+.+++||-..++..+.+. |+|
T Consensus 63 VIGQe~AKKvLsVAVYNHYKRl~~~~~--~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVG 140 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNHYKRLNNKED--NDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVG 140 (408)
T ss_pred eecchhhhceeeeeehhHHHHHhccCC--CCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccc
Confidence 6999999988754332 121 1110 0111222 369999999999999999999999999999999888764 777
Q ss_pred hhhHHH-HHHHHHHH----hCCCeEEEEcccchhhhhhcC
Q 005611 251 VGSARI-RDLFKRAK----VNKPSVIFIDEIDALATRRQG 285 (688)
Q Consensus 251 ~~~~~~-r~~f~~A~----~~~p~IL~LDEiD~l~~~~~~ 285 (688)
+.-.++ ..++..|. +....|++|||||.+.++..+
T Consensus 141 EDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN 180 (408)
T COG1219 141 EDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSEN 180 (408)
T ss_pred hhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCC
Confidence 755443 33443331 123459999999999987643
No 236
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.92 E-value=2.1e-08 Score=106.21 Aligned_cols=67 Identities=37% Similarity=0.584 Sum_probs=50.3
Q ss_pred ccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcC--CCEEEeeCchhHH
Q 005611 173 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG--VPFYQMAGSEFVE 246 (688)
Q Consensus 173 ~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~--~~~~~v~~~~~~~ 246 (688)
..+.++|+.++.+..--+++.++... -.++++||.||||||||.||-++|+++| .||..++++++++
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K-------~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS 90 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGK-------IAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYS 90 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT---------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-B
T ss_pred ccccccChHHHHHHHHHHHHHHhccc-------ccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeee
Confidence 35678999999999888888776542 3578999999999999999999999875 7888887777663
No 237
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=7.7e-09 Score=106.90 Aligned_cols=84 Identities=29% Similarity=0.386 Sum_probs=59.6
Q ss_pred CeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCC--------CCCCcEEEEEecC----CCCcCC
Q 005611 268 PSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF--------DTGKGVIFLAATN----RRDLLD 335 (688)
Q Consensus 268 p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~--------~~~~~viVIaaTN----~~~~Ld 335 (688)
-.|+||||||.++.+...+..+ -.++.....||-.++|. -+...+++||+.- .|.+|-
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~d----------vSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLi 320 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPD----------VSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLI 320 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCC----------cchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcC
Confidence 3599999999999876532222 22333445555555543 2345689998854 488888
Q ss_pred ccccCCCccceeeeccCCChhhHHHHHH
Q 005611 336 PALLRPGRFDRKIRIRAPNAKGRTEILK 363 (688)
Q Consensus 336 ~aL~r~gRf~~~I~i~~Pd~~eR~~Il~ 363 (688)
|.|.- ||.-.+++...+.++-.+||.
T Consensus 321 PELQG--RfPIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 321 PELQG--RFPIRVELDALTKEDFERILT 346 (444)
T ss_pred hhhcC--CCceEEEcccCCHHHHHHHHc
Confidence 88885 999999999999998888774
No 238
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2e-08 Score=109.01 Aligned_cols=143 Identities=29% Similarity=0.477 Sum_probs=100.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCch-hHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcC
Q 005611 207 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE-FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQG 285 (688)
Q Consensus 207 ~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~-~~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~ 285 (688)
+-.++||+||||+|||.||-.+|...+.||+.+-.++ ............++..|+.|.+..-+||++|+++.+.+--.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vp- 615 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVP- 615 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccc-
Confidence 3457999999999999999999999999999876553 22211122334688999999999889999999999985432
Q ss_pred CccCcchhhhhhhhHHHHHHHHHHHHHhcCCCC-CCcEEEEEecCCCCcCCc-cccCCCccceeeeccCCCh-hhHHHHH
Q 005611 286 IFKDTTDHLYNAATQERETTLNQLLIELDGFDT-GKGVIFLAATNRRDLLDP-ALLRPGRFDRKIRIRAPNA-KGRTEIL 362 (688)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~-~~~viVIaaTN~~~~Ld~-aL~r~gRf~~~I~i~~Pd~-~eR~~Il 362 (688)
......+.++..|+..+....+ +++.+|++||.+.+.|.. .+.. -|+..+++|.-.. ++..+++
T Consensus 616 -----------IGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl 682 (744)
T KOG0741|consen 616 -----------IGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVL 682 (744)
T ss_pred -----------cCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHH
Confidence 2334445566666666665443 456888888887654432 3444 6888888876654 5555554
Q ss_pred H
Q 005611 363 K 363 (688)
Q Consensus 363 ~ 363 (688)
.
T Consensus 683 ~ 683 (744)
T KOG0741|consen 683 E 683 (744)
T ss_pred H
Confidence 4
No 239
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.89 E-value=2.5e-08 Score=117.79 Aligned_cols=196 Identities=26% Similarity=0.381 Sum_probs=119.2
Q ss_pred CcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhHHH
Q 005611 171 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV 247 (688)
Q Consensus 171 ~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~~~ 247 (688)
+.+|++++|..+.++.+.+.+..+. ..+..|+|+|++|||||++|+++.... +.||+.++|......
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVA----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 4578899999999888877766542 234579999999999999999998754 579999999865432
Q ss_pred -----Hhhh------h-hHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcC
Q 005611 248 -----LVGV------G-SARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDG 315 (688)
Q Consensus 248 -----~~g~------~-~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~ 315 (688)
+.|. + .......|+.| ....|||||++.+.... + ..|+..++.
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~a---~~GtL~Ldei~~L~~~~-------------------Q---~~L~~~l~~ 496 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFELA---DKSSLFLDEVGDMPLEL-------------------Q---PKLLRVLQE 496 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHhc---CCCeEEEechhhCCHHH-------------------H---HHHHHHHHh
Confidence 1221 0 01122334433 34699999999975432 2 233333321
Q ss_pred C-----C----CCCcEEEEEecCCCC--cCCccccCCC---ccceeeeccCCChhhHHH----HHHHHhccC----cCCC
Q 005611 316 F-----D----TGKGVIFLAATNRRD--LLDPALLRPG---RFDRKIRIRAPNAKGRTE----ILKIHASKV----KMSD 373 (688)
Q Consensus 316 ~-----~----~~~~viVIaaTN~~~--~Ld~aL~r~g---Rf~~~I~i~~Pd~~eR~~----Il~~~l~~~----~~~~ 373 (688)
- . ...++.+|++|+..- .+.....++. |+. .+.+..|+..+|.+ ++++++.+. +...
T Consensus 497 ~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~ 575 (686)
T PRK15429 497 QEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNI 575 (686)
T ss_pred CCEEeCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCC
Confidence 1 1 124578899988642 1222222211 221 45677788877765 445544332 2111
Q ss_pred -ccC---HHHHHhh-CCCCCHHHHHHHHHHHHHHH
Q 005611 374 -SVD---LSSYAKN-LPGWTGARLAQLVQEAALVA 403 (688)
Q Consensus 374 -~~d---l~~la~~-t~G~s~~dL~~lv~~A~~~A 403 (688)
.++ +..|.+. .+| +.++|++++++|...+
T Consensus 576 ~~~s~~al~~L~~y~WPG-NvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 576 DSIPAETLRTLSNMEWPG-NVRELENVIERAVLLT 609 (686)
T ss_pred CCcCHHHHHHHHhCCCCC-cHHHHHHHHHHHHHhC
Confidence 122 4444444 445 8999999999998765
No 240
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.85 E-value=5.6e-09 Score=132.34 Aligned_cols=112 Identities=16% Similarity=0.033 Sum_probs=71.1
Q ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc--ccc--------------c---cccCC
Q 005611 109 YTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRS--KAE--------------A---RVDGS 169 (688)
Q Consensus 109 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~~--------------~---~~~~~ 169 (688)
++.|.+..++.|...+..++..+...+..+.....+..|+.++.+....... ... . .-+..
T Consensus 1136 ~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~ 1215 (1490)
T TIGR01271 1136 DGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSG 1215 (1490)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCC
Confidence 3455666666677777777766666666666666777777766543221110 000 0 00123
Q ss_pred CCcccccc-cccHHH-HHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 170 TGVKFSDV-AGIDEA-VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 170 ~~v~f~dV-~G~~~~-k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
+.+.|+|| +.|.+. +..|+++ ++.++++..+.|+|++|+|||||+++|.+.
T Consensus 1216 g~I~f~nVs~~Y~~~~~~vL~~i-----------s~~I~~GekvaIvGrSGsGKSTLl~lL~rl 1268 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEAGRAVLQDL-----------SFSVEGGQRVGLLGRTGSGKSTLLSALLRL 1268 (1490)
T ss_pred CeEEEEEEEEEeCCCCcceeecc-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhhh
Confidence 56889998 556431 2233333 667889999999999999999999999983
No 241
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.83 E-value=2.2e-08 Score=115.44 Aligned_cols=100 Identities=24% Similarity=0.296 Sum_probs=64.4
Q ss_pred cEEEEEecCCC--CcCCccccCCCccc---eeeecc--CC-ChhhHHHHHHHHhccCcC---CCccC---HHHHH---hh
Q 005611 321 GVIFLAATNRR--DLLDPALLRPGRFD---RKIRIR--AP-NAKGRTEILKIHASKVKM---SDSVD---LSSYA---KN 383 (688)
Q Consensus 321 ~viVIaaTN~~--~~Ld~aL~r~gRf~---~~I~i~--~P-d~~eR~~Il~~~l~~~~~---~~~~d---l~~la---~~ 383 (688)
.+.||+++|+. ..+||+|.. ||. ..+++. .+ +.+.+..+++...+.... ...++ +..+. .+
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 56889999874 457899888 775 445544 22 245555566544433211 12233 22222 12
Q ss_pred CCC------CCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHh
Q 005611 384 LPG------WTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDR 422 (688)
Q Consensus 384 t~G------~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al~~ 422 (688)
..| +..++|.+++++|...|..++++.++.+|+.+|+.+
T Consensus 355 ~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 355 RAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 222 347899999999999999999999999999988754
No 242
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.81 E-value=7e-09 Score=100.84 Aligned_cols=113 Identities=30% Similarity=0.386 Sum_probs=71.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCC----CEEEeeCchhHHHHhhhhhHHHHHHHHHH----HhCCCeEEEEcccchh
Q 005611 208 PHGVLLEGPPGCGKTLVAKAIAGEAGV----PFYQMAGSEFVEVLVGVGSARIRDLFKRA----KVNKPSVIFIDEIDAL 279 (688)
Q Consensus 208 ~~gvLL~GppGtGKT~La~alA~~~~~----~~~~v~~~~~~~~~~g~~~~~~r~~f~~A----~~~~p~IL~LDEiD~l 279 (688)
-..++|+||+|+|||.+|+++|+.+.. +++.++++++.+. +.....+...+..+ ......||+|||||.+
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa 80 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKA 80 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhhc
Confidence 346999999999999999999999996 9999999988761 11111111111111 1111129999999998
Q ss_pred hhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCC---------CCCCcEEEEEecCCCCc
Q 005611 280 ATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF---------DTGKGVIFLAATNRRDL 333 (688)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~---------~~~~~viVIaaTN~~~~ 333 (688)
....+. ..+.......+.||..+++- -.-+++++|+|+|.-..
T Consensus 81 ~~~~~~-----------~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 81 HPSNSG-----------GADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp SHTTTT-----------CSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTH
T ss_pred cccccc-----------cchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccc
Confidence 875221 12333345556666666531 11246899999997553
No 243
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.80 E-value=7e-08 Score=113.24 Aligned_cols=129 Identities=17% Similarity=0.146 Sum_probs=75.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcC-------CCEEEeeCchhHHHHhh-hhhHHH--HHHHHHHHhCCCeEEEEc
Q 005611 205 IKPPHGVLLEGPPGCGKTLVAKAIAGEAG-------VPFYQMAGSEFVEVLVG-VGSARI--RDLFKRAKVNKPSVIFID 274 (688)
Q Consensus 205 ~~~~~gvLL~GppGtGKT~La~alA~~~~-------~~~~~v~~~~~~~~~~g-~~~~~~--r~~f~~A~~~~p~IL~LD 274 (688)
++...+|||+|+||||||.+|++++.... .++..+.+..... ... ..+... ...+.. ....+++||
T Consensus 489 iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~-~~d~~tG~~~le~GaLvl---AdgGtL~ID 564 (915)
T PTZ00111 489 FRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIK-FNESDNGRAMIQPGAVVL---ANGGVCCID 564 (915)
T ss_pred ccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhh-hcccccCcccccCCcEEE---cCCCeEEec
Confidence 34455899999999999999999998543 3444444433211 000 001100 011212 223499999
Q ss_pred ccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCC-----------CCCCcEEEEEecCCCC-----------
Q 005611 275 EIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF-----------DTGKGVIFLAATNRRD----------- 332 (688)
Q Consensus 275 EiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~-----------~~~~~viVIaaTN~~~----------- 332 (688)
|+|.+.... + ..|++.|+.- .-+.++.||||+|...
T Consensus 565 Eidkms~~~-------------------Q---~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~e 622 (915)
T PTZ00111 565 ELDKCHNES-------------------R---LSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIE 622 (915)
T ss_pred chhhCCHHH-------------------H---HHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCccc
Confidence 999865332 2 2334444321 1135689999999742
Q ss_pred --cCCccccCCCccceeee-ccCCChhhHHHH
Q 005611 333 --LLDPALLRPGRFDRKIR-IRAPNAKGRTEI 361 (688)
Q Consensus 333 --~Ld~aL~r~gRf~~~I~-i~~Pd~~eR~~I 361 (688)
.|++++++ |||..+- ++.|+.+.-+.|
T Consensus 623 ni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~l 652 (915)
T PTZ00111 623 NINISPSLFT--RFDLIYLVLDHIDQDTDQLI 652 (915)
T ss_pred ccCCChHHhh--hhcEEEEecCCCChHHHHHH
Confidence 37899999 9998654 456665544443
No 244
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.79 E-value=1.6e-07 Score=105.58 Aligned_cols=193 Identities=19% Similarity=0.267 Sum_probs=122.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc----------CCCEEEeeCchhH------HH----Hhhh------hhHHHHHHHHHH
Q 005611 210 GVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMAGSEFV------EV----LVGV------GSARIRDLFKRA 263 (688)
Q Consensus 210 gvLL~GppGtGKT~La~alA~~~----------~~~~~~v~~~~~~------~~----~~g~------~~~~~r~~f~~A 263 (688)
.+++.|-||||||.+++.+.+++ ..+++.+++-.+. +. +.|+ +-+.+..-|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 68999999999999999998855 3456777764432 22 1121 111122223211
Q ss_pred -HhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCc----CCccc
Q 005611 264 -KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDL----LDPAL 338 (688)
Q Consensus 264 -~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~----Ld~aL 338 (688)
-...++||+|||+|.|..+.+ .++..+..+-- .++..++||+..|..+. |...+
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~Q-------------------dVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrv 562 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRSQ-------------------DVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRV 562 (767)
T ss_pred CCCCCCEEEEeccHHHHhcccH-------------------HHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccch
Confidence 234578999999999987643 22333332211 34567888888887553 33344
Q ss_pred cCCCccc-eeeeccCCChhhHHHHHHHHhccCcCCCccCHHHH-HhhCCCC--CHHHHHHHHHHHHHHHHHhCC------
Q 005611 339 LRPGRFD-RKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSY-AKNLPGW--TGARLAQLVQEAALVAVRKGH------ 408 (688)
Q Consensus 339 ~r~gRf~-~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~dl~~l-a~~t~G~--s~~dL~~lv~~A~~~A~~~~~------ 408 (688)
.+ |++ ..+.|.+++..+..+|+...+.....-.. +..+| |+..... +.+....+|++|...|..+..
T Consensus 563 sS--Rlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~-~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~ 639 (767)
T KOG1514|consen 563 SS--RLGLTRICFQPYTHEQLQEIISARLKGLDAFEN-KAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAV 639 (767)
T ss_pred hh--hccceeeecCCCCHHHHHHHHHHhhcchhhcch-hHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccc
Confidence 44 554 47889999999999999999987633222 23333 3332222 456777889999999876654
Q ss_pred -ccccHHHHHHHHHhhccC
Q 005611 409 -ESILSSDMDDAVDRLTVG 426 (688)
Q Consensus 409 -~~I~~~di~~Al~~~~~g 426 (688)
..++..|+.+|+......
T Consensus 640 ~q~v~~~~v~~Ai~em~~~ 658 (767)
T KOG1514|consen 640 SQLVGILHVMEAINEMLAS 658 (767)
T ss_pred cceeehHHHHHHHHHHhhh
Confidence 457788888888766543
No 245
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.78 E-value=3.9e-08 Score=95.35 Aligned_cols=93 Identities=28% Similarity=0.462 Sum_probs=62.8
Q ss_pred ccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhHHHH-----
Q 005611 177 VAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVL----- 248 (688)
Q Consensus 177 V~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~~~~----- 248 (688)
++|.++..+++.+.+..+. ..+..|+|+|++||||+++|+++.+.. +.||+.++|+.+....
T Consensus 1 liG~s~~m~~~~~~~~~~a----------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA----------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT----------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHh----------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 4677778777777666532 334579999999999999999999865 5799999998775442
Q ss_pred hhhh-------hHHHHHHHHHHHhCCCeEEEEcccchhhhh
Q 005611 249 VGVG-------SARIRDLFKRAKVNKPSVIFIDEIDALATR 282 (688)
Q Consensus 249 ~g~~-------~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~ 282 (688)
.|.. .......|+.|... .||||||+.+...
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L~~~ 108 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDLPPE 108 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS-HH
T ss_pred hccccccccccccccCCceeeccce---EEeecchhhhHHH
Confidence 2321 11133677776655 9999999997644
No 246
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.78 E-value=6.6e-08 Score=123.05 Aligned_cols=166 Identities=12% Similarity=0.146 Sum_probs=111.7
Q ss_pred ccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccc--ccccc-cCCCCcccccc-cccH
Q 005611 106 YEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRSK--AEARV-DGSTGVKFSDV-AGID 181 (688)
Q Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~--~~~~~-~~~~~v~f~dV-~G~~ 181 (688)
.+.++.+...+++.++..+..|+..+...+..++....+..|+.+++...+..... ..... .....++++++ ++++
T Consensus 568 ~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 647 (1522)
T TIGR00957 568 NNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWA 647 (1522)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcC
Confidence 35788899999999999999999999999999999999999998887653322111 00011 11125777777 4443
Q ss_pred HH-HHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCC---------CEEEe-------eC---
Q 005611 182 EA-VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV---------PFYQM-------AG--- 241 (688)
Q Consensus 182 ~~-k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~---------~~~~v-------~~--- 241 (688)
.. +..|+++ ++.++++.-+.++||+|+|||||+++++++... .+-++ +.
T Consensus 648 ~~~~~~l~~i-----------sl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~ 716 (1522)
T TIGR00957 648 RDLPPTLNGI-----------TFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLR 716 (1522)
T ss_pred CCCCceeeee-----------EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHH
Confidence 11 1112221 556778888999999999999999999986421 00011 00
Q ss_pred ----------chhHHH--------------------Hhhh------hhHHHHHHHHHHHhCCCeEEEEcccchhhhh
Q 005611 242 ----------SEFVEV--------------------LVGV------GSARIRDLFKRAKVNKPSVIFIDEIDALATR 282 (688)
Q Consensus 242 ----------~~~~~~--------------------~~g~------~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~ 282 (688)
.+.+.. .+|+ +++++|..++||...+|.|+++||..+-.+.
T Consensus 717 eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~ 793 (1522)
T TIGR00957 717 ENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA 793 (1522)
T ss_pred HHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence 000110 0111 6889999999999999999999999886544
No 247
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.77 E-value=3.9e-08 Score=105.50 Aligned_cols=158 Identities=25% Similarity=0.413 Sum_probs=98.2
Q ss_pred CcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc-------CCCEEEe----
Q 005611 171 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-------GVPFYQM---- 239 (688)
Q Consensus 171 ~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~-------~~~~~~v---- 239 (688)
...|.-++|+|..|..|--- --+| .-.|+||-|+.|+||||++|+|+.-+ |++|-.-
T Consensus 13 ~~pf~aivGqd~lk~aL~l~---av~P---------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLN---AVDP---------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred ccchhhhcCchHHHHHHhhh---hccc---------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 56788899999888776211 1111 22479999999999999999999865 2322100
Q ss_pred --eCchhHHH-------------------HhhhhhHHHH------------------HHHHHHHhCCCeEEEEcccchhh
Q 005611 240 --AGSEFVEV-------------------LVGVGSARIR------------------DLFKRAKVNKPSVIFIDEIDALA 280 (688)
Q Consensus 240 --~~~~~~~~-------------------~~g~~~~~~r------------------~~f~~A~~~~p~IL~LDEiD~l~ 280 (688)
.|.....+ -.|.++.++- .++.+| +-.|+++||+..|.
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~A---nRGIlYvDEvnlL~ 157 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARA---NRGILYVDEVNLLD 157 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhc---cCCEEEEecccccc
Confidence 01111111 1112222211 122222 23499999998765
Q ss_pred hhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhc---------C--CCCCCcEEEEEecCCCC-cCCccccCCCccceee
Q 005611 281 TRRQGIFKDTTDHLYNAATQERETTLNQLLIELD---------G--FDTGKGVIFLAATNRRD-LLDPALLRPGRFDRKI 348 (688)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld---------~--~~~~~~viVIaaTN~~~-~Ld~aL~r~gRf~~~I 348 (688)
+. ..+.||..+. | +..+.++++|+|+|..+ .|-|.|+. ||...+
T Consensus 158 d~----------------------lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v 213 (423)
T COG1239 158 DH----------------------LVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEV 213 (423)
T ss_pred HH----------------------HHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhccee
Confidence 32 2344444332 2 13345799999999754 68899998 999999
Q ss_pred eccCC-ChhhHHHHHHHHhc
Q 005611 349 RIRAP-NAKGRTEILKIHAS 367 (688)
Q Consensus 349 ~i~~P-d~~eR~~Il~~~l~ 367 (688)
.+..| +.++|.+|.+..+.
T Consensus 214 ~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 214 DTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred eccCCCCHHHHHHHHHHHHH
Confidence 99876 57888888876554
No 248
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.76 E-value=1.5e-07 Score=100.36 Aligned_cols=129 Identities=19% Similarity=0.313 Sum_probs=93.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCC------------------------EEEeeCchhHHHHhhhhhHHHHHHHH
Q 005611 206 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVP------------------------FYQMAGSEFVEVLVGVGSARIRDLFK 261 (688)
Q Consensus 206 ~~~~gvLL~GppGtGKT~La~alA~~~~~~------------------------~~~v~~~~~~~~~~g~~~~~~r~~f~ 261 (688)
+.++.+||+||+|+||+++|+++|+.+-+. ++.+...+. ...+-..+|.+.+
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~----~~I~id~iR~l~~ 97 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDN----KDIGVDQVREINE 97 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccC----CCCCHHHHHHHHH
Confidence 567789999999999999999999966431 111211000 0123456676655
Q ss_pred HHHh----CCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCcc
Q 005611 262 RAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPA 337 (688)
Q Consensus 262 ~A~~----~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~a 337 (688)
.+.. ....|++||++|.+... ..|.||+.|+ +++.++++|.+|+.++.+.|.
T Consensus 98 ~~~~~~~~g~~KV~iI~~a~~m~~~----------------------AaNaLLKtLE--EPp~~~~fiL~t~~~~~llpT 153 (325)
T PRK06871 98 KVSQHAQQGGNKVVYIQGAERLTEA----------------------AANALLKTLE--EPRPNTYFLLQADLSAALLPT 153 (325)
T ss_pred HHhhccccCCceEEEEechhhhCHH----------------------HHHHHHHHhc--CCCCCeEEEEEECChHhCchH
Confidence 5432 33469999999987532 3488999988 466778888889999999999
Q ss_pred ccCCCccceeeeccCCChhhHHHHHHHH
Q 005611 338 LLRPGRFDRKIRIRAPNAKGRTEILKIH 365 (688)
Q Consensus 338 L~r~gRf~~~I~i~~Pd~~eR~~Il~~~ 365 (688)
+++ |. ..+.+++|+.++..+.|...
T Consensus 154 I~S--RC-~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 154 IYS--RC-QTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred HHh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 998 74 57889999998888777654
No 249
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=3.5e-08 Score=105.87 Aligned_cols=132 Identities=25% Similarity=0.353 Sum_probs=94.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCE-------------------------EEeeCchhHH--------------
Q 005611 206 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPF-------------------------YQMAGSEFVE-------------- 246 (688)
Q Consensus 206 ~~~~gvLL~GppGtGKT~La~alA~~~~~~~-------------------------~~v~~~~~~~-------------- 246 (688)
+.|+.+||+||+|+||+++|+.+|+.+.+.. ..+.. +...
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p-~~~~~~~~~~~~~~~~~~ 97 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRP-EALAAEAPGAADEAKEAD 97 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEec-ccccccccccccccccch
Confidence 6788999999999999999999998775421 11110 0000
Q ss_pred ---H------H-hhhhhHHHHHHHHHHHh----CCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHH
Q 005611 247 ---V------L-VGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIE 312 (688)
Q Consensus 247 ---~------~-~g~~~~~~r~~f~~A~~----~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ 312 (688)
. . ...+-..+|.+...+.. ....|++||++|.+... ..|.||+.
T Consensus 98 ~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~----------------------AaNaLLKt 155 (342)
T PRK06964 98 ADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVA----------------------AANALLKT 155 (342)
T ss_pred hhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHH----------------------HHHHHHHH
Confidence 0 0 00123456666554432 23459999999986532 34889999
Q ss_pred hcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHH
Q 005611 313 LDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIH 365 (688)
Q Consensus 313 ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~ 365 (688)
++ +++.++++|.+|++++.|.|.+++ |+ ..+.|++|+.++..+.|...
T Consensus 156 LE--EPp~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 156 LE--EPPPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred hc--CCCcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 98 567788888899999999999999 86 68999999999888888654
No 250
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.72 E-value=1e-07 Score=98.40 Aligned_cols=249 Identities=16% Similarity=0.157 Sum_probs=141.9
Q ss_pred ccccccCCCCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeC
Q 005611 162 AEARVDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAG 241 (688)
Q Consensus 162 ~~~~~~~~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~ 241 (688)
...+++..+.-.+.||++.++....+.++.+.- +.| +.|+|||||+|||+...+.|+.+..|.-.-
T Consensus 28 ~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~-----------~lP-h~L~YgPPGtGktsti~a~a~~ly~~~~~~-- 93 (360)
T KOG0990|consen 28 PQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMP-----------GLP-HLLFYGPPGTGKTSTILANARDFYSPHPTT-- 93 (360)
T ss_pred CCCCccCCCCchhhhHhcCCchhhHHHHhccCC-----------CCC-cccccCCCCCCCCCchhhhhhhhcCCCCch--
Confidence 344566777788999999999888887763221 112 789999999999999999999987751111
Q ss_pred chhHHHH----hhhh-hHHHHHHHHHHHh-------CCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHH
Q 005611 242 SEFVEVL----VGVG-SARIRDLFKRAKV-------NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQL 309 (688)
Q Consensus 242 ~~~~~~~----~g~~-~~~~r~~f~~A~~-------~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 309 (688)
+-..+.. .|-. .+.+-..|+.++. ..+..++|||+|+.....+ |+|
T Consensus 94 ~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQ----------------------nAL 151 (360)
T KOG0990|consen 94 SMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQ----------------------NAL 151 (360)
T ss_pred hHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHH----------------------HHH
Confidence 0111110 1111 1222334554442 3678999999999765432 333
Q ss_pred HHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccC-HHHHHhhCCCCC
Q 005611 310 LIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKNLPGWT 388 (688)
Q Consensus 310 L~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~d-l~~la~~t~G~s 388 (688)
-...+.+..+ +.++..+|.+..+.|++++ ||. .+.+.+-+..+-...+.+++.........+ ...+++. +
T Consensus 152 RRviek~t~n--~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~----s 222 (360)
T KOG0990|consen 152 RRVIEKYTAN--TRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRL----S 222 (360)
T ss_pred HHHHHHhccc--eEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHH----h
Confidence 3444444444 4444568999999999998 765 455666666677777777775543332211 2223332 4
Q ss_pred HHHHHHHHHHHHHHHHHhC---------------CccccHHHHHHHHHhhccCCCccCccccCCcchhHHHHHHHHHHHH
Q 005611 389 GARLAQLVQEAALVAVRKG---------------HESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMIS 453 (688)
Q Consensus 389 ~~dL~~lv~~A~~~A~~~~---------------~~~I~~~di~~Al~~~~~g~~~~~~~~~~~~~~~ia~hE~GhAvv~ 453 (688)
..|++..++.....+..-. .......|+++.++....+.-. ..+.+....+-..-.+-++++.
T Consensus 223 ~gDmr~a~n~Lqs~~~~~~~~~e~~~~~~~vy~c~g~p~~~dI~~I~~~il~~~~~--~~~~~is~lk~~~gla~~d~i~ 300 (360)
T KOG0990|consen 223 VGDMRVALNYLQSILKKVMERKELNNPNDLVYQCKGAPQPSDIRQIIEKRMNGEDI--ELMLDDSELKKPKGLARQDRRA 300 (360)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCchhhHHHhcCCCChhHHHHHHHHHhcCchH--HHHhhhhhhhhhhhhHHHHHHH
Confidence 5566666665443332211 1223344666666655554321 1122222233344455566666
Q ss_pred HHhh
Q 005611 454 HLLR 457 (688)
Q Consensus 454 ~~l~ 457 (688)
++..
T Consensus 301 ~l~~ 304 (360)
T KOG0990|consen 301 ELEQ 304 (360)
T ss_pred HHHH
Confidence 6543
No 251
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.71 E-value=8.3e-08 Score=92.60 Aligned_cols=133 Identities=29% Similarity=0.446 Sum_probs=85.0
Q ss_pred ccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----------------------
Q 005611 179 GIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP----------------------- 235 (688)
Q Consensus 179 G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~----------------------- 235 (688)
|++++.+.|.+.+.. -+.|..+||+||+|+||+++|.++|+.+-+.
T Consensus 1 gq~~~~~~L~~~~~~-----------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-----------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHC-----------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHc-----------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 677788888776542 2567789999999999999999999966332
Q ss_pred EEEeeCchhHHHHhhhhhHHHHHHHHHHH----hCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHH
Q 005611 236 FYQMAGSEFVEVLVGVGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLI 311 (688)
Q Consensus 236 ~~~v~~~~~~~~~~g~~~~~~r~~f~~A~----~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~ 311 (688)
++.++...... ..+.+.+|.+...+. .....|++|||+|.+... ..|.||.
T Consensus 70 ~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~----------------------a~NaLLK 124 (162)
T PF13177_consen 70 FIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEE----------------------AQNALLK 124 (162)
T ss_dssp EEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HH----------------------HHHHHHH
T ss_pred eEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHH----------------------HHHHHHH
Confidence 22222211000 012345665555542 234669999999986533 3478888
Q ss_pred HhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccC
Q 005611 312 ELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRA 352 (688)
Q Consensus 312 ~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~ 352 (688)
.|+ +++.++++|.+|+.++.+.|.+++ |. ..+.+++
T Consensus 125 ~LE--epp~~~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~ 160 (162)
T PF13177_consen 125 TLE--EPPENTYFILITNNPSKILPTIRS--RC-QVIRFRP 160 (162)
T ss_dssp HHH--STTTTEEEEEEES-GGGS-HHHHT--TS-EEEEE--
T ss_pred Hhc--CCCCCEEEEEEECChHHChHHHHh--hc-eEEecCC
Confidence 888 455778888899999999999999 74 3555554
No 252
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=1e-07 Score=102.41 Aligned_cols=155 Identities=17% Similarity=0.245 Sum_probs=102.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCC------------------------EEEeeCchhHHHHhhhhhHHHHHHHH
Q 005611 206 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVP------------------------FYQMAGSEFVEVLVGVGSARIRDLFK 261 (688)
Q Consensus 206 ~~~~gvLL~GppGtGKT~La~alA~~~~~~------------------------~~~v~~~~~~~~~~g~~~~~~r~~f~ 261 (688)
+.+..+||+||+|+||+++|.++|+.+-+. ++.+....- . ...+-..+|.+.+
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~--~~I~idqiR~l~~ 98 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-K--SSLGVDAVREVTE 98 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-c--ccCCHHHHHHHHH
Confidence 667789999999999999999999966331 111111000 0 0123345666655
Q ss_pred HHH----hCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCcc
Q 005611 262 RAK----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPA 337 (688)
Q Consensus 262 ~A~----~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~a 337 (688)
.+. .....|++||++|.+... ..|.||+.|+ +++.++++|..|+.++.|.|.
T Consensus 99 ~~~~~~~~g~~kV~iI~~ae~m~~~----------------------AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpT 154 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALLTDA----------------------AANALLKTLE--EPPENTWFFLACREPARLLAT 154 (334)
T ss_pred HHhhccccCCceEEEEcchHhhCHH----------------------HHHHHHHHhc--CCCCCeEEEEEECChhhChHH
Confidence 543 234569999999986532 3488999998 466778888889999999999
Q ss_pred ccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccCHHHHHhhCCCCCHHHHHHH
Q 005611 338 LLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQL 395 (688)
Q Consensus 338 L~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~G~s~~dL~~l 395 (688)
+++ |.. .+.+++|+.++..+.+.... +.+. .+...+++.+.| ++.....+
T Consensus 155 IrS--RCq-~~~~~~~~~~~~~~~L~~~~---~~~~-~~a~~~~~la~G-~~~~Al~l 204 (334)
T PRK07993 155 LRS--RCR-LHYLAPPPEQYALTWLSREV---TMSQ-DALLAALRLSAG-APGAALAL 204 (334)
T ss_pred HHh--ccc-cccCCCCCHHHHHHHHHHcc---CCCH-HHHHHHHHHcCC-CHHHHHHH
Confidence 999 865 67999999888777765431 2221 124455556655 44433333
No 253
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.69 E-value=9.2e-09 Score=103.56 Aligned_cols=80 Identities=26% Similarity=0.451 Sum_probs=55.1
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCC---------EEE-----------------------e
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVP---------FYQ-----------------------M 239 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~----------~~~---------~~~-----------------------v 239 (688)
++.+..+.-+.|.||||||||||.+.+|+-. |.+ ++. .
T Consensus 23 ~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~ 102 (248)
T COG1116 23 NLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGK 102 (248)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhcccc
Confidence 5556777789999999999999999999822 000 000 0
Q ss_pred eCc----------------hhHHHHhh--hhhHHHHHHHHHHHhCCCeEEEEcccchhhh
Q 005611 240 AGS----------------EFVEVLVG--VGSARIRDLFKRAKVNKPSVIFIDEIDALAT 281 (688)
Q Consensus 240 ~~~----------------~~~~~~~g--~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~ 281 (688)
+.. .+-+.|.. .|+.++|..+++|....|.||++||--..++
T Consensus 103 ~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALD 162 (248)
T COG1116 103 SKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALD 162 (248)
T ss_pred chHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhh
Confidence 000 01111111 1788999999999999999999999866554
No 254
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.68 E-value=1e-07 Score=107.02 Aligned_cols=207 Identities=18% Similarity=0.232 Sum_probs=120.3
Q ss_pred ccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhHHHHh
Q 005611 173 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLV 249 (688)
Q Consensus 173 ~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~~~~~ 249 (688)
.+.+++|.....+.+.+.+..+. .....++|+|++||||+++|+++.... +.||+.++|..+.+...
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIA----------PSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 45678888877777766554332 233468999999999999999998765 56899999988754432
Q ss_pred hhh------------hHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhc--C
Q 005611 250 GVG------------SARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD--G 315 (688)
Q Consensus 250 g~~------------~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld--~ 315 (688)
... .......+.. .....|||||++.+.... +..+-.++..-. .
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l~~i~~l~~~~-------------------q~~l~~~l~~~~~~~ 264 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEY---AHGGTLFLDEIGDLPLNL-------------------QAKLLRFLQERVIER 264 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeE---CCCCEEEEechhhCCHHH-------------------HHHHHHHHhhCeEEe
Confidence 210 0001111222 234589999999976432 222223332210 0
Q ss_pred CC----CCCcEEEEEecCCCC-------cCCccccCCCccceeeeccCCChhhHHH----HHHHHhccC----cCC-Ccc
Q 005611 316 FD----TGKGVIFLAATNRRD-------LLDPALLRPGRFDRKIRIRAPNAKGRTE----ILKIHASKV----KMS-DSV 375 (688)
Q Consensus 316 ~~----~~~~viVIaaTN~~~-------~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~----Il~~~l~~~----~~~-~~~ 375 (688)
.. .+.++.+|++|+..- .+.+.|.. |+. .+.+..|+..+|.+ +.++++.+. +.. ..+
T Consensus 265 ~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~ 341 (445)
T TIGR02915 265 LGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGF 341 (445)
T ss_pred CCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCC
Confidence 01 112578888887642 23333332 332 45667777777765 444444332 111 122
Q ss_pred C---HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHH
Q 005611 376 D---LSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMD 417 (688)
Q Consensus 376 d---l~~la~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~ 417 (688)
+ +..|.+..-.-+.++|++++++|...+ ....|+.+|+.
T Consensus 342 ~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~---~~~~i~~~~l~ 383 (445)
T TIGR02915 342 TDDALRALEAHAWPGNVRELENKVKRAVIMA---EGNQITAEDLG 383 (445)
T ss_pred CHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHcC
Confidence 2 444544432338999999999998665 34567777753
No 255
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.67 E-value=4.2e-07 Score=96.79 Aligned_cols=157 Identities=20% Similarity=0.257 Sum_probs=99.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCC---------------------EEEee-CchhHH-H-HhhhhhHHHHHHHH
Q 005611 206 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVP---------------------FYQMA-GSEFVE-V-LVGVGSARIRDLFK 261 (688)
Q Consensus 206 ~~~~gvLL~GppGtGKT~La~alA~~~~~~---------------------~~~v~-~~~~~~-~-~~g~~~~~~r~~f~ 261 (688)
+.|..+||+||+|+||+++|.++|+.+-+. ++.+. .++-.+ + ....+-..+|.+.+
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 567789999999999999999999866331 11111 000000 0 00112345666665
Q ss_pred HHHhC----CCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCcc
Q 005611 262 RAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPA 337 (688)
Q Consensus 262 ~A~~~----~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~a 337 (688)
.+... ...|++||++|.+... ..|.||+.|+. ++.++++|.+|+.++.+.|.
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m~~~----------------------AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpT 159 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAINRA----------------------ACNALLKTLEE--PSPGRYLWLISAQPARLPAT 159 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhhCHH----------------------HHHHHHHHhhC--CCCCCeEEEEECChhhCchH
Confidence 54332 3369999999997432 34888888884 45667777788889999999
Q ss_pred ccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccCHHHHHhhCCCCCHHHHHHH
Q 005611 338 LLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQL 395 (688)
Q Consensus 338 L~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~G~s~~dL~~l 395 (688)
+++ |+ ..+.+++|+.++-.+.+... ..+ ..+...+++.+.| ++.....+
T Consensus 160 IrS--RC-q~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G-~p~~A~~~ 208 (319)
T PRK08769 160 IRS--RC-QRLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARG-HPGLAAQW 208 (319)
T ss_pred HHh--hh-eEeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCC-CHHHHHHH
Confidence 999 75 57889999988777776532 222 1223455666656 44433333
No 256
>PRK08116 hypothetical protein; Validated
Probab=98.67 E-value=1.3e-07 Score=98.66 Aligned_cols=69 Identities=26% Similarity=0.476 Sum_probs=49.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhHHHHhhh----hhHHHHHHHHHHHhCCCeEEEEcccch
Q 005611 208 PHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGV----GSARIRDLFKRAKVNKPSVIFIDEIDA 278 (688)
Q Consensus 208 ~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~~~~~g~----~~~~~r~~f~~A~~~~p~IL~LDEiD~ 278 (688)
+.+++|+|++|||||+||.++++++ +.+++.++.+++...+... ........+.. ....++|+|||+..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~--l~~~dlLviDDlg~ 189 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRS--LVNADLLILDDLGA 189 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHH--hcCCCEEEEecccC
Confidence 4579999999999999999999975 7889999988877654322 11112223332 23456999999964
No 257
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.67 E-value=6.7e-09 Score=94.57 Aligned_cols=109 Identities=28% Similarity=0.433 Sum_probs=56.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCc-hhH-HHHhhhhhHHH-HHHHHHHHhCC---CeEEEEcccchhhhhh
Q 005611 210 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS-EFV-EVLVGVGSARI-RDLFKRAKVNK---PSVIFIDEIDALATRR 283 (688)
Q Consensus 210 gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~-~~~-~~~~g~~~~~~-r~~f~~A~~~~---p~IL~LDEiD~l~~~~ 283 (688)
++||+|+||+|||++|+++|+..+..|..+.+. ++. ....|..--.. ...|.- ... ..|+++|||.+..++.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~--~~GPif~~ill~DEiNrappkt 78 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEF--RPGPIFTNILLADEINRAPPKT 78 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEE--EE-TT-SSEEEEETGGGS-HHH
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEe--ecChhhhceeeecccccCCHHH
Confidence 489999999999999999999999999988774 332 23333210000 000000 011 1399999999866543
Q ss_pred cCCccCcchhhhhhhhHHHHHHHHHHHHHhcC---------CCCCCcEEEEEecCCCC-----cCCccccCCCcc
Q 005611 284 QGIFKDTTDHLYNAATQERETTLNQLLIELDG---------FDTGKGVIFLAATNRRD-----LLDPALLRPGRF 344 (688)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~---------~~~~~~viVIaaTN~~~-----~Ld~aL~r~gRf 344 (688)
+ ..+|+.|.. +.-++.++||||-|..+ .|+++++. ||
T Consensus 79 Q----------------------sAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 79 Q----------------------SALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp H----------------------HHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred H----------------------HHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 2 344444331 12345689999999866 47888887 76
No 258
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.66 E-value=8.1e-07 Score=95.99 Aligned_cols=205 Identities=19% Similarity=0.240 Sum_probs=132.1
Q ss_pred ccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc----CC-CEEEeeCchhHH---
Q 005611 175 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----GV-PFYQMAGSEFVE--- 246 (688)
Q Consensus 175 ~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~----~~-~~~~v~~~~~~~--- 246 (688)
..+.|.+..+..+++++.. .+..+.+..+++.|-||||||.+...+-... .. ..++++|..+..
T Consensus 150 ~~l~gRe~e~~~v~~F~~~--------hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~a 221 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSL--------HLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASA 221 (529)
T ss_pred CCccchHHHHHHHHHHHHh--------hhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHH
Confidence 4568888888888888664 3334667789999999999999888664433 22 346777764221
Q ss_pred ---H----H----hhh-hhHHHHHHHHHHHh-C-CCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHH
Q 005611 247 ---V----L----VGV-GSARIRDLFKRAKV-N-KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIE 312 (688)
Q Consensus 247 ---~----~----~g~-~~~~~r~~f~~A~~-~-~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ 312 (688)
+ + .+. .+......|.+-.. . .+-++++||.|.++.+.+. ++.. +-+
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~-------------------vLy~-lFe 281 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQT-------------------VLYT-LFE 281 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccc-------------------eeee-ehh
Confidence 1 1 111 12223344444322 2 3679999999999855432 1122 223
Q ss_pred hcCCCCCCcEEEEEecCCCCcCCccccC----CCccceeeeccCCChhhHHHHHHHHhccCcCCCccC--HHHHHhhCCC
Q 005611 313 LDGFDTGKGVIFLAATNRRDLLDPALLR----PGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD--LSSYAKNLPG 386 (688)
Q Consensus 313 ld~~~~~~~viVIaaTN~~~~Ld~aL~r----~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~d--l~~la~~t~G 386 (688)
+..+ .+.++++|+..|..|.=|..|-| .+--...+.|++++.++-.+|++..+.........+ +.-.|+...|
T Consensus 282 wp~l-p~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa 360 (529)
T KOG2227|consen 282 WPKL-PNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAA 360 (529)
T ss_pred cccC-CcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhcc
Confidence 3332 34678888999987754433322 222345889999999999999999998876654444 5667777777
Q ss_pred CCH--HHHHHHHHHHHHHHHHhCC
Q 005611 387 WTG--ARLAQLVQEAALVAVRKGH 408 (688)
Q Consensus 387 ~s~--~dL~~lv~~A~~~A~~~~~ 408 (688)
.|| +.+-.+|++|..++..+.+
T Consensus 361 ~SGDlRkaLdv~R~aiEI~E~e~r 384 (529)
T KOG2227|consen 361 PSGDLRKALDVCRRAIEIAEIEKR 384 (529)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHh
Confidence 665 3455678888888876654
No 259
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=8.8e-08 Score=102.01 Aligned_cols=74 Identities=32% Similarity=0.573 Sum_probs=58.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHH-HHhhhhh-HHHHHHHHHHH----hCCCeEEEEcccchhhhhh
Q 005611 210 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE-VLVGVGS-ARIRDLFKRAK----VNKPSVIFIDEIDALATRR 283 (688)
Q Consensus 210 gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~-~~~g~~~-~~~r~~f~~A~----~~~p~IL~LDEiD~l~~~~ 283 (688)
+|||.||+|+|||.||+.||+-+++||..++|..+.. .|+|+.- .-+..++..|. +.+..|+||||+|.+..+.
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~ 307 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKA 307 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccC
Confidence 6999999999999999999999999999999998764 4777643 33455555442 2345599999999998543
No 260
>PRK12377 putative replication protein; Provisional
Probab=98.64 E-value=2.9e-07 Score=94.65 Aligned_cols=70 Identities=20% Similarity=0.298 Sum_probs=50.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhHHHHhhhhh--HHHHHHHHHHHhCCCeEEEEcccchh
Q 005611 208 PHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGVGS--ARIRDLFKRAKVNKPSVIFIDEIDAL 279 (688)
Q Consensus 208 ~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~~~~~g~~~--~~~r~~f~~A~~~~p~IL~LDEiD~l 279 (688)
..+++|+||||||||+||.++++++ +..++.++.+++.......-. ......+.. ....++|+|||++..
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~--l~~~dLLiIDDlg~~ 175 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQE--LCKVDLLVLDEIGIQ 175 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHH--hcCCCEEEEcCCCCC
Confidence 3589999999999999999999977 677888888887775432211 111223332 346779999999764
No 261
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.60 E-value=4e-07 Score=93.43 Aligned_cols=101 Identities=18% Similarity=0.334 Sum_probs=64.7
Q ss_pred CCcccccc-cccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhH
Q 005611 170 TGVKFSDV-AGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFV 245 (688)
Q Consensus 170 ~~v~f~dV-~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~ 245 (688)
..-+|++. .+.+..+..+..+..+.++.. ....+++|+|+||||||+|+.+++.++ +..++.++.+++.
T Consensus 67 ~~~tFdnf~~~~~~q~~al~~a~~~~~~~~-------~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~ 139 (244)
T PRK07952 67 QNCSFENYRVECEGQMNALSKARQYVEEFD-------GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIM 139 (244)
T ss_pred cCCccccccCCCchHHHHHHHHHHHHHhhc-------cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHH
Confidence 45678886 333333333444333332211 112489999999999999999999987 7788888888887
Q ss_pred HHHhhhh---hHHHHHHHHHHHhCCCeEEEEcccchh
Q 005611 246 EVLVGVG---SARIRDLFKRAKVNKPSVIFIDEIDAL 279 (688)
Q Consensus 246 ~~~~g~~---~~~~r~~f~~A~~~~p~IL~LDEiD~l 279 (688)
..+...- .......+.. ...+++|+|||++..
T Consensus 140 ~~l~~~~~~~~~~~~~~l~~--l~~~dlLvIDDig~~ 174 (244)
T PRK07952 140 SAMKDTFSNSETSEEQLLND--LSNVDLLVIDEIGVQ 174 (244)
T ss_pred HHHHHHHhhccccHHHHHHH--hccCCEEEEeCCCCC
Confidence 6544321 1122233333 236789999999874
No 262
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.58 E-value=7.1e-07 Score=100.48 Aligned_cols=207 Identities=22% Similarity=0.304 Sum_probs=120.3
Q ss_pred ccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhHHHHh
Q 005611 173 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLV 249 (688)
Q Consensus 173 ~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~~~~~ 249 (688)
.+.+++|.......+.+.+..+. .....++++|++||||+++|+++.... +.||+.++|..+.+...
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIA----------LSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred cccceecccHHHhHHHHHHHHHc----------CCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 44567777766666555444322 233479999999999999999997754 57999999987644322
Q ss_pred -----hhhh-------HHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCC-
Q 005611 250 -----GVGS-------ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF- 316 (688)
Q Consensus 250 -----g~~~-------~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~- 316 (688)
|... ......+.. ....+|||||++.+.... + ..|+..++.-
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ld~i~~l~~~~-------------------q---~~L~~~l~~~~ 265 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFER---ANEGTLLLDEIGEMPLVL-------------------Q---AKLLRILQERE 265 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEE---CCCCEEEEechhhCCHHH-------------------H---HHHHHHHhcCc
Confidence 1100 000112222 234589999999976432 2 2333333211
Q ss_pred ----CC----CCcEEEEEecCCCCcCCccccCCCccce-------eeeccCCChhhHHH----HHHHHhccCc----CC-
Q 005611 317 ----DT----GKGVIFLAATNRRDLLDPALLRPGRFDR-------KIRIRAPNAKGRTE----ILKIHASKVK----MS- 372 (688)
Q Consensus 317 ----~~----~~~viVIaaTN~~~~Ld~aL~r~gRf~~-------~I~i~~Pd~~eR~~----Il~~~l~~~~----~~- 372 (688)
.. ..++.+|++||..-. .+.+.|+|.. .+.+..|+..+|.+ +.++++.+.. ..
T Consensus 266 ~~~~~~~~~~~~~~rii~~t~~~l~---~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~ 342 (457)
T PRK11361 266 FERIGGHQTIKVDIRIIAATNRDLQ---AMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDI 342 (457)
T ss_pred EEeCCCCceeeeceEEEEeCCCCHH---HHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCC
Confidence 11 134788999886321 2222233332 46677788777754 4444443321 11
Q ss_pred CccC---HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 005611 373 DSVD---LSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 420 (688)
Q Consensus 373 ~~~d---l~~la~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al 420 (688)
..++ +..+....-.-+.++|++++++|...+ ....|+.+|+...+
T Consensus 343 ~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~---~~~~i~~~~l~~~~ 390 (457)
T PRK11361 343 IDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN---SGPIIFSEDLPPQI 390 (457)
T ss_pred CCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhC---CCCcccHHHChHhh
Confidence 1122 344444432338999999999988654 44578888886554
No 263
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.57 E-value=5.4e-07 Score=95.86 Aligned_cols=129 Identities=19% Similarity=0.280 Sum_probs=90.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCC-----------------------EEEeeCchhHHHHhhhhhHHHHHHHHH
Q 005611 206 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-----------------------FYQMAGSEFVEVLVGVGSARIRDLFKR 262 (688)
Q Consensus 206 ~~~~gvLL~GppGtGKT~La~alA~~~~~~-----------------------~~~v~~~~~~~~~~g~~~~~~r~~f~~ 262 (688)
+.+..+||+||.|+||+++|+++|+.+-+. ++.+.... .++ ..+...+|.+...
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~--~I~vdqiR~l~~~ 99 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGK--SITVEQIRQCNRL 99 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCC--cCCHHHHHHHHHH
Confidence 567789999999999999999999866331 22221110 000 0123455665544
Q ss_pred HHh----CCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccc
Q 005611 263 AKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPAL 338 (688)
Q Consensus 263 A~~----~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL 338 (688)
+.. ....|++||++|.+... ..|.||+.++ +++.++++|..|+.++.+.|.+
T Consensus 100 ~~~~~~~~~~kV~iI~~ae~m~~~----------------------AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTI 155 (319)
T PRK06090 100 AQESSQLNGYRLFVIEPADAMNES----------------------ASNALLKTLE--EPAPNCLFLLVTHNQKRLLPTI 155 (319)
T ss_pred HhhCcccCCceEEEecchhhhCHH----------------------HHHHHHHHhc--CCCCCeEEEEEECChhhChHHH
Confidence 432 23469999999987532 3488999988 4567788888899999999999
Q ss_pred cCCCccceeeeccCCChhhHHHHHHH
Q 005611 339 LRPGRFDRKIRIRAPNAKGRTEILKI 364 (688)
Q Consensus 339 ~r~gRf~~~I~i~~Pd~~eR~~Il~~ 364 (688)
++ |. ..+.+++|+.++..+.+..
T Consensus 156 ~S--RC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 156 VS--RC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred Hh--cc-eeEeCCCCCHHHHHHHHHH
Confidence 98 75 4889999998888777654
No 264
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.56 E-value=1.2e-07 Score=91.18 Aligned_cols=30 Identities=40% Similarity=0.582 Sum_probs=26.1
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++.-++++||||+||||+.|.+.++
T Consensus 22 s~~i~~Gef~fl~GpSGAGKSTllkLi~~~ 51 (223)
T COG2884 22 SFHIPKGEFVFLTGPSGAGKSTLLKLIYGE 51 (223)
T ss_pred eEeecCceEEEEECCCCCCHHHHHHHHHhh
Confidence 556677777999999999999999999873
No 265
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.55 E-value=2.9e-07 Score=104.11 Aligned_cols=207 Identities=20% Similarity=0.303 Sum_probs=123.1
Q ss_pred ccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhHHHHh
Q 005611 173 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLV 249 (688)
Q Consensus 173 ~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~~~~~ 249 (688)
.+.+++|.......+.+.+..+. .....++|.|++|||||++|+++.+.. +.||+.++|..+.....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLS----------RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHh----------ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 45678898888777766655332 234469999999999999999998875 57999999987643321
Q ss_pred -----hhhhH------H-HHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCC-
Q 005611 250 -----GVGSA------R-IRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF- 316 (688)
Q Consensus 250 -----g~~~~------~-~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~- 316 (688)
|.... . ....|.. .....|||||++.+.... + ..|+..++.-
T Consensus 206 ~~~lfg~~~g~~~~~~~~~~g~~~~---a~~Gtl~l~~i~~l~~~~-------------------q---~~L~~~l~~~~ 260 (469)
T PRK10923 206 ESELFGHEKGAFTGANTIRQGRFEQ---ADGGTLFLDEIGDMPLDV-------------------Q---TRLLRVLADGQ 260 (469)
T ss_pred HHHhcCCCCCCCCCCCcCCCCCeeE---CCCCEEEEeccccCCHHH-------------------H---HHHHHHHhcCc
Confidence 11000 0 0111222 234589999999875432 2 2333333311
Q ss_pred ----C----CCCcEEEEEecCCCC-------cCCccccCCCccceeeeccCCChhhHHH----HHHHHhccC----cCC-
Q 005611 317 ----D----TGKGVIFLAATNRRD-------LLDPALLRPGRFDRKIRIRAPNAKGRTE----ILKIHASKV----KMS- 372 (688)
Q Consensus 317 ----~----~~~~viVIaaTN~~~-------~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~----Il~~~l~~~----~~~- 372 (688)
. ...++.+|+||+..- .+.+.|.. |+. .+.+..|+..+|.+ ++++++++. +..
T Consensus 261 ~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~ 337 (469)
T PRK10923 261 FYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEA 337 (469)
T ss_pred EEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCC
Confidence 0 123468888887532 23344444 442 45566676666654 555555432 111
Q ss_pred CccC---HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 005611 373 DSVD---LSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 420 (688)
Q Consensus 373 ~~~d---l~~la~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al 420 (688)
..++ +..|.+..-.-+.++|+++++++...+ ....|+.+|+...+
T Consensus 338 ~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~~l~~~~ 385 (469)
T PRK10923 338 KLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA---AGQEVLIQDLPGEL 385 (469)
T ss_pred CCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCcHhh
Confidence 1122 444554433338999999999988766 34578888875444
No 266
>PRK08181 transposase; Validated
Probab=98.54 E-value=6.7e-07 Score=93.11 Aligned_cols=72 Identities=22% Similarity=0.368 Sum_probs=51.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhHHHHhhhh-hHHHHHHHHHHHhCCCeEEEEcccchhh
Q 005611 207 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGVG-SARIRDLFKRAKVNKPSVIFIDEIDALA 280 (688)
Q Consensus 207 ~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~~~~~g~~-~~~~r~~f~~A~~~~p~IL~LDEiD~l~ 280 (688)
.+.+++|+||||||||+|+.+++.++ +..+++++.+++.+.+.... .......+.. ...+++|+|||++...
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~--l~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAK--LDKFDLLILDDLAYVT 180 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHH--HhcCCEEEEecccccc
Confidence 34579999999999999999999755 77888888888877653321 1122233333 3457799999998754
No 267
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.53 E-value=8e-07 Score=89.82 Aligned_cols=184 Identities=24% Similarity=0.324 Sum_probs=92.0
Q ss_pred cccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC---EEEeeC-chhH----HHH-
Q 005611 178 AGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP---FYQMAG-SEFV----EVL- 248 (688)
Q Consensus 178 ~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~---~~~v~~-~~~~----~~~- 248 (688)
+|.++..+.|.+++.. .+...++|+||.|+|||+|++.+.+...-. .+++.. .... ...
T Consensus 2 ~gR~~el~~l~~~l~~------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 69 (234)
T PF01637_consen 2 FGREKELEKLKELLES------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFI 69 (234)
T ss_dssp -S-HHHHHHHHHCHHH--------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHH
Confidence 4666666666655432 234579999999999999999999987321 111111 1110 001
Q ss_pred ------------hh-----------------hhhHHHHHHHHHHHhC-CCeEEEEcccchhh-hhhcCCccCcchhhhhh
Q 005611 249 ------------VG-----------------VGSARIRDLFKRAKVN-KPSVIFIDEIDALA-TRRQGIFKDTTDHLYNA 297 (688)
Q Consensus 249 ------------~g-----------------~~~~~~r~~f~~A~~~-~p~IL~LDEiD~l~-~~~~~~~~~~~~~~~~~ 297 (688)
.+ .....+..++...... ...||+|||++.+. ....
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~------------- 136 (234)
T PF01637_consen 70 EETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE------------- 136 (234)
T ss_dssp HHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT-------------
T ss_pred HHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc-------------
Confidence 00 1123344555554443 24899999999987 2211
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCcE-EEEEecCC--C-C--cCCccccCCCccceeeeccCCChhhHHHHHHHHhccC-c
Q 005611 298 ATQERETTLNQLLIELDGFDTGKGV-IFLAATNR--R-D--LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKV-K 370 (688)
Q Consensus 298 ~~~~~~~~l~~LL~~ld~~~~~~~v-iVIaaTN~--~-~--~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~-~ 370 (688)
....+..+...++......++ +|+++++. . + .-...+.. |+.. +.+++.+.++..++++...... +
T Consensus 137 ----~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~~~ 209 (234)
T PF01637_consen 137 ----DKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKELIK 209 (234)
T ss_dssp ----THHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC--
T ss_pred ----hHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHhhc
Confidence 112223333333332233333 44444432 1 1 11223333 7776 9999999999999999987665 1
Q ss_pred C-CCccCHHHHHhhCCCCCHHHHHH
Q 005611 371 M-SDSVDLSSYAKNLPGWTGARLAQ 394 (688)
Q Consensus 371 ~-~~~~dl~~la~~t~G~s~~dL~~ 394 (688)
+ .++.++..+...+.| .|+.|..
T Consensus 210 ~~~~~~~~~~i~~~~gG-~P~~l~~ 233 (234)
T PF01637_consen 210 LPFSDEDIEEIYSLTGG-NPRYLQE 233 (234)
T ss_dssp ----HHHHHHHHHHHTT--HHHHHH
T ss_pred ccCCHHHHHHHHHHhCC-CHHHHhc
Confidence 1 244567778888877 5666543
No 268
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.52 E-value=3.4e-07 Score=89.76 Aligned_cols=57 Identities=26% Similarity=0.341 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCC
Q 005611 252 GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNR 330 (688)
Q Consensus 252 ~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~ 330 (688)
|++++|..++||....|.||++||..+.++ +.....+.+++.++. .+-.+||.|-|.
T Consensus 152 GGQQQRLcIARalAv~PeVlLmDEPtSALD------------------PIsT~kIEeLi~eLk----~~yTIviVTHnm 208 (253)
T COG1117 152 GGQQQRLCIARALAVKPEVLLMDEPTSALD------------------PISTLKIEELITELK----KKYTIVIVTHNM 208 (253)
T ss_pred hhHHHHHHHHHHHhcCCcEEEecCcccccC------------------chhHHHHHHHHHHHH----hccEEEEEeCCH
Confidence 788999999999999999999999988553 333445677777774 234566656654
No 269
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.51 E-value=8.1e-07 Score=112.95 Aligned_cols=171 Identities=15% Similarity=0.125 Sum_probs=99.4
Q ss_pred cChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCccccccccccccccccccccccCCCCcccccc-cccHHHHHH
Q 005611 109 YTFGGLSASLEMLKPITLVIL-TMVLLIRFTLSRRPKNFRKWDLWQGIDFSRSKAEARVDGSTGVKFSDV-AGIDEAVEE 186 (688)
Q Consensus 109 ~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~f~dV-~G~~~~k~~ 186 (688)
++.+...+++.++..+..|+. .+..++..+.....+..|+.+++...+...... ......+.++++ +.++...+.
T Consensus 332 ~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~---~~~~~~i~~~~~~f~~~~~~~~ 408 (1490)
T TIGR01271 332 IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEY---NLTTTEVEMVNVTASWDEGIGE 408 (1490)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc---cCCCCceEEecceEecCCcccc
Confidence 567888888888888888875 577778888888888889888876543221110 000112333332 111100000
Q ss_pred H----------------HHHH--HH--hcChhhhh--ccCCCCCceEEEEcCCCChHHHHHHHHHHhcCC---------C
Q 005611 187 L----------------QELV--RY--LKNPELFD--KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV---------P 235 (688)
Q Consensus 187 L----------------~~ii--~~--l~~~~~~~--~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~---------~ 235 (688)
+ ...+ .. +.....++ ++.++++.-+.|.||+|+|||||.+++++.... .
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~ 488 (1490)
T TIGR01271 409 LFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR 488 (1490)
T ss_pred ccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE
Confidence 0 0000 00 00011222 345667777999999999999999999986511 0
Q ss_pred EEEe-------e------------Cc-hhHHH--------------------Hhhh------hhHHHHHHHHHHHhCCCe
Q 005611 236 FYQM-------A------------GS-EFVEV--------------------LVGV------GSARIRDLFKRAKVNKPS 269 (688)
Q Consensus 236 ~~~v-------~------------~~-~~~~~--------------------~~g~------~~~~~r~~f~~A~~~~p~ 269 (688)
+-++ + .. +.+.. .+|+ +++++|..+++|...+|.
T Consensus 489 iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~ 568 (1490)
T TIGR01271 489 ISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDAD 568 (1490)
T ss_pred EEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCC
Confidence 0000 0 00 00000 0111 678999999999999999
Q ss_pred EEEEcccchhhhh
Q 005611 270 VIFIDEIDALATR 282 (688)
Q Consensus 270 IL~LDEiD~l~~~ 282 (688)
|+++||..+-.+.
T Consensus 569 illLDep~saLD~ 581 (1490)
T TIGR01271 569 LYLLDSPFTHLDV 581 (1490)
T ss_pred EEEEeCCcccCCH
Confidence 9999999886544
No 270
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.50 E-value=6.2e-07 Score=102.79 Aligned_cols=189 Identities=15% Similarity=0.122 Sum_probs=127.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC--CCEEEeeCchhHHHHhhhh---------hH-HHHHHHHHHHhCCCeEEEEccc
Q 005611 209 HGVLLEGPPGCGKTLVAKAIAGEAG--VPFYQMAGSEFVEVLVGVG---------SA-RIRDLFKRAKVNKPSVIFIDEI 276 (688)
Q Consensus 209 ~gvLL~GppGtGKT~La~alA~~~~--~~~~~v~~~~~~~~~~g~~---------~~-~~r~~f~~A~~~~p~IL~LDEi 276 (688)
.|++|.|+.|+|||+++++++.-+. .||.....+--.+..+|.+ .. .....+.+|.. .||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~---GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADG---GVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccC---CEEEecCc
Confidence 4899999999999999999999874 5887776665555566542 11 11233433332 49999999
Q ss_pred chhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCC-----------CCCCcEEEEEecCCC---CcCCccccCCC
Q 005611 277 DALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF-----------DTGKGVIFLAATNRR---DLLDPALLRPG 342 (688)
Q Consensus 277 D~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~-----------~~~~~viVIaaTN~~---~~Ld~aL~r~g 342 (688)
..+.+ .++..|++.|+.- .-+..+++|++-|.. ..|+++++.
T Consensus 103 n~~~~----------------------~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD-- 158 (584)
T PRK13406 103 ERLEP----------------------GTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD-- 158 (584)
T ss_pred ccCCH----------------------HHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--
Confidence 87643 3446666666521 123568888874432 358899999
Q ss_pred ccceeeeccCCChhhH-------HHHHHH--HhccCcCCCccCHHHHHhh--CCCC-CHHHHHHHHHHHHHHHHHhCCcc
Q 005611 343 RFDRKIRIRAPNAKGR-------TEILKI--HASKVKMSDSVDLSSYAKN--LPGW-TGARLAQLVQEAALVAVRKGHES 410 (688)
Q Consensus 343 Rf~~~I~i~~Pd~~eR-------~~Il~~--~l~~~~~~~~~dl~~la~~--t~G~-s~~dL~~lv~~A~~~A~~~~~~~ 410 (688)
||+.++.++.|+..+. .+|.+. .+.+..+++. .+..++.. ..|. |.+.-..+++-|...|..++++.
T Consensus 159 Rf~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~-~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~ 237 (584)
T PRK13406 159 RLAFHLDLDGLALRDAREIPIDADDIAAARARLPAVGPPPE-AIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTA 237 (584)
T ss_pred heEEEEEcCCCChHHhcccCCCHHHHHHHHHHHccCCCCHH-HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCC
Confidence 9999999998876532 233332 2233222221 23333222 2355 78888999999999999999999
Q ss_pred ccHHHHHHHHHhhcc
Q 005611 411 ILSSDMDDAVDRLTV 425 (688)
Q Consensus 411 I~~~di~~Al~~~~~ 425 (688)
|+.+|+.+|+.-+..
T Consensus 238 V~~~dv~~Aa~lvL~ 252 (584)
T PRK13406 238 VEEEDLALAARLVLA 252 (584)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999876653
No 271
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.50 E-value=1.4e-07 Score=94.75 Aligned_cols=31 Identities=29% Similarity=0.411 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHhCCCeEEEEcccchhhhh
Q 005611 252 GSARIRDLFKRAKVNKPSVIFIDEIDALATR 282 (688)
Q Consensus 252 ~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~ 282 (688)
|++++|.+++||..++|.||+.||-+.-++.
T Consensus 145 GGqqQRVAIARAL~~~P~iilADEPTgnLD~ 175 (226)
T COG1136 145 GGQQQRVAIARALINNPKIILADEPTGNLDS 175 (226)
T ss_pred HHHHHHHHHHHHHhcCCCeEEeeCccccCCh
Confidence 7889999999999999999999999875543
No 272
>PRK15115 response regulator GlrR; Provisional
Probab=98.49 E-value=3.8e-07 Score=102.32 Aligned_cols=181 Identities=23% Similarity=0.377 Sum_probs=107.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhHHHHhhhh-----h-------HHHHHHHHHHHhCCCeEEE
Q 005611 208 PHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGVG-----S-------ARIRDLFKRAKVNKPSVIF 272 (688)
Q Consensus 208 ~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~~~~~g~~-----~-------~~~r~~f~~A~~~~p~IL~ 272 (688)
...++|+|++|||||++|+++.+.. +.||+.++|..+.+...... . ......+.. .+...||
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ 233 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQA---AEGGTLF 233 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEE---CCCCEEE
Confidence 3469999999999999999998865 57999999987644322110 0 000111222 2345899
Q ss_pred EcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCC-----CC----CCcEEEEEecCCCCcCCccccCCCc
Q 005611 273 IDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF-----DT----GKGVIFLAATNRRDLLDPALLRPGR 343 (688)
Q Consensus 273 LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~-----~~----~~~viVIaaTN~~~~Ld~aL~r~gR 343 (688)
|||+|.+....+ ..|+..++.- .. ..++.+|++|+.. ++..+.+ |+
T Consensus 234 l~~i~~l~~~~q----------------------~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~~~-~~ 288 (444)
T PRK15115 234 LDEIGDMPAPLQ----------------------VKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAMAR-GE 288 (444)
T ss_pred EEccccCCHHHH----------------------HHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHHHc-CC
Confidence 999999764432 2333333211 11 1257888888853 3333222 34
Q ss_pred cce-------eeeccCCChhhHHH----HHHHHhccC----cCC-CccC---HHHHHhhC-CCCCHHHHHHHHHHHHHHH
Q 005611 344 FDR-------KIRIRAPNAKGRTE----ILKIHASKV----KMS-DSVD---LSSYAKNL-PGWTGARLAQLVQEAALVA 403 (688)
Q Consensus 344 f~~-------~I~i~~Pd~~eR~~----Il~~~l~~~----~~~-~~~d---l~~la~~t-~G~s~~dL~~lv~~A~~~A 403 (688)
|.. .+.+..|+..+|.+ ++++++++. ... ..++ +..+.... +| +.++|++++++|+..+
T Consensus 289 f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~Wpg-NvreL~~~i~~~~~~~ 367 (444)
T PRK15115 289 FREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG-NVRQLVNVIEQCVALT 367 (444)
T ss_pred ccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCC-hHHHHHHHHHHHHHhC
Confidence 421 45667788877754 445554432 111 1122 55555554 45 8999999999988654
Q ss_pred HHhCCccccHHHHHHHH
Q 005611 404 VRKGHESILSSDMDDAV 420 (688)
Q Consensus 404 ~~~~~~~I~~~di~~Al 420 (688)
....|+.+++...+
T Consensus 368 ---~~~~i~~~~l~~~~ 381 (444)
T PRK15115 368 ---SSPVISDALVEQAL 381 (444)
T ss_pred ---CCCccChhhhhhhh
Confidence 34578888876544
No 273
>PRK06526 transposase; Provisional
Probab=98.49 E-value=3.1e-07 Score=95.04 Aligned_cols=72 Identities=22% Similarity=0.427 Sum_probs=49.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhHHHHhhhh-hHHHHHHHHHHHhCCCeEEEEcccchhh
Q 005611 207 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGVG-SARIRDLFKRAKVNKPSVIFIDEIDALA 280 (688)
Q Consensus 207 ~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~~~~~g~~-~~~~r~~f~~A~~~~p~IL~LDEiD~l~ 280 (688)
.+.+++|+||||||||+|+.+++.++ |..+...+.+++.+...... .......+.. ...+++|+|||++.+.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~--l~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK--LGRYPLLIVDEVGYIP 172 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH--hccCCEEEEcccccCC
Confidence 45689999999999999999998865 66677777777766543211 1122222322 3457799999998754
No 274
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.48 E-value=4.9e-07 Score=85.32 Aligned_cols=74 Identities=19% Similarity=0.313 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 005611 252 GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRR 331 (688)
Q Consensus 252 ~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~ 331 (688)
|++++|.++.+-....|.||+|||+++.++.. ..+.++.++..+ ....++-|+..|+.+
T Consensus 136 GGE~QriAliR~Lq~~P~ILLLDE~TsALD~~------------------nkr~ie~mi~~~---v~~q~vAv~WiTHd~ 194 (223)
T COG4619 136 GGEKQRIALIRNLQFMPKILLLDEITSALDES------------------NKRNIEEMIHRY---VREQNVAVLWITHDK 194 (223)
T ss_pred chHHHHHHHHHHhhcCCceEEecCchhhcChh------------------hHHHHHHHHHHH---hhhhceEEEEEecCh
Confidence 67788888888888899999999999876432 233344444333 224566777778866
Q ss_pred CcCCccccCCCccceeeeccC
Q 005611 332 DLLDPALLRPGRFDRKIRIRA 352 (688)
Q Consensus 332 ~~Ld~aL~r~gRf~~~I~i~~ 352 (688)
+. +++ -+++.|.+.+
T Consensus 195 dq---a~r---ha~k~itl~~ 209 (223)
T COG4619 195 DQ---AIR---HADKVITLQP 209 (223)
T ss_pred HH---Hhh---hhheEEEecc
Confidence 54 232 3566666654
No 275
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.47 E-value=1.5e-07 Score=92.54 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHhCCCeEEEEcccchhhh
Q 005611 252 GSARIRDLFKRAKVNKPSVIFIDEIDALAT 281 (688)
Q Consensus 252 ~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~ 281 (688)
|++++|.+++||...+|.++++||.++.++
T Consensus 139 GGQqQRVAIARALaM~P~vmLFDEPTSALD 168 (240)
T COG1126 139 GGQQQRVAIARALAMDPKVMLFDEPTSALD 168 (240)
T ss_pred cHHHHHHHHHHHHcCCCCEEeecCCcccCC
Confidence 789999999999999999999999998654
No 276
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.47 E-value=1.2e-06 Score=93.19 Aligned_cols=101 Identities=24% Similarity=0.357 Sum_probs=64.3
Q ss_pred CcccccccccH-HHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhHH
Q 005611 171 GVKFSDVAGID-EAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE 246 (688)
Q Consensus 171 ~v~f~dV~G~~-~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~~ 246 (688)
..+|+++...+ .....+.....++.... . .+.++|++|+||+|||||+|+.++|+++ +.++..+..+++..
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~~~---~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~ 197 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEAYP---P--GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR 197 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHHhh---c--cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH
Confidence 46778774333 22223333333433211 1 1245799999999999999999999987 78888888888876
Q ss_pred HHhhhh-hHHHHHHHHHHHhCCCeEEEEcccch
Q 005611 247 VLVGVG-SARIRDLFKRAKVNKPSVIFIDEIDA 278 (688)
Q Consensus 247 ~~~g~~-~~~~r~~f~~A~~~~p~IL~LDEiD~ 278 (688)
.+...- .......+.. ....++|+|||+..
T Consensus 198 ~lk~~~~~~~~~~~l~~--l~~~dlLiIDDiG~ 228 (306)
T PRK08939 198 ELKNSISDGSVKEKIDA--VKEAPVLMLDDIGA 228 (306)
T ss_pred HHHHHHhcCcHHHHHHH--hcCCCEEEEecCCC
Confidence 654321 1122333433 34567999999976
No 277
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.44 E-value=7.6e-07 Score=96.55 Aligned_cols=141 Identities=22% Similarity=0.301 Sum_probs=85.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCC-CEEEeeCchhHHHHhhh------hhHHHHHHHHHHHhCCCeEEEEcccc
Q 005611 205 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGV-PFYQMAGSEFVEVLVGV------GSARIRDLFKRAKVNKPSVIFIDEID 277 (688)
Q Consensus 205 ~~~~~gvLL~GppGtGKT~La~alA~~~~~-~~~~v~~~~~~~~~~g~------~~~~~r~~f~~A~~~~p~IL~LDEiD 277 (688)
..+|+|++||||+|+|||+|+.++...+.. .-..+...+|....... ....+.. +++.......+|++||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~-va~~l~~~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQ-VADELAKESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHH-HHHHHHhcCCEEEEeeee
Confidence 467999999999999999999999887754 22233334444332211 1111222 223333455599999997
Q ss_pred hhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCC-CCcCCccccCCCccceeeeccCCChh
Q 005611 278 ALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNR-RDLLDPALLRPGRFDRKIRIRAPNAK 356 (688)
Q Consensus 278 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~-~~~Ld~aL~r~gRf~~~I~i~~Pd~~ 356 (688)
- .+-.....+..|+..+- ..++++|+|+|+ |+.|-+.=+...||-.
T Consensus 138 V-------------------~DiaDAmil~rLf~~l~----~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp---------- 184 (362)
T PF03969_consen 138 V-------------------TDIADAMILKRLFEALF----KRGVVLVATSNRPPEDLYKNGLQRERFLP---------- 184 (362)
T ss_pred c-------------------cchhHHHHHHHHHHHHH----HCCCEEEecCCCChHHHcCCcccHHHHHH----------
Confidence 5 22223445566666653 367899999998 4444332222123322
Q ss_pred hHHHHHHHHhccCcCCCccCHHHH
Q 005611 357 GRTEILKIHASKVKMSDSVDLSSY 380 (688)
Q Consensus 357 eR~~Il~~~l~~~~~~~~~dl~~l 380 (688)
-.++++.++.-..+....|+...
T Consensus 185 -~I~~l~~~~~vv~ld~~~DyR~~ 207 (362)
T PF03969_consen 185 -FIDLLKRRCDVVELDGGVDYRRR 207 (362)
T ss_pred -HHHHHHhceEEEEecCCCchhhh
Confidence 24677888877777777777654
No 278
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.43 E-value=1.9e-06 Score=89.28 Aligned_cols=72 Identities=28% Similarity=0.474 Sum_probs=52.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhHHHHhhhhhH-HHHHHHHHHHhCCCeEEEEcccchh
Q 005611 207 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGVGSA-RIRDLFKRAKVNKPSVIFIDEIDAL 279 (688)
Q Consensus 207 ~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~~~~~g~~~~-~~r~~f~~A~~~~p~IL~LDEiD~l 279 (688)
.+.+++|+||||+|||+||-|++.++ |.++..++.+++.......-.. .....+.+. ....++|+|||+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~-l~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE-LKKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH-hhcCCEEEEecccCc
Confidence 45689999999999999999999876 7889999999988775443221 111222221 345679999999774
No 279
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.43 E-value=8.8e-08 Score=97.64 Aligned_cols=60 Identities=27% Similarity=0.349 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 005611 252 GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRR 331 (688)
Q Consensus 252 ~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~ 331 (688)
|++.+|..+++|...+|.+++|||-..- .+...+..+.+++.++.. . +..|+..|++.
T Consensus 142 GGQ~QRV~lARAL~~~p~lllLDEP~~g------------------vD~~~~~~i~~lL~~l~~---e-g~tIl~vtHDL 199 (254)
T COG1121 142 GGQKQRVLLARALAQNPDLLLLDEPFTG------------------VDVAGQKEIYDLLKELRQ---E-GKTVLMVTHDL 199 (254)
T ss_pred cHHHHHHHHHHHhccCCCEEEecCCccc------------------CCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCc
Confidence 7899999999999999999999998653 344455667777777752 2 44555567765
Q ss_pred Cc
Q 005611 332 DL 333 (688)
Q Consensus 332 ~~ 333 (688)
..
T Consensus 200 ~~ 201 (254)
T COG1121 200 GL 201 (254)
T ss_pred HH
Confidence 54
No 280
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.43 E-value=1.2e-06 Score=98.82 Aligned_cols=210 Identities=22% Similarity=0.351 Sum_probs=117.8
Q ss_pred ccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhHHHHhhh
Q 005611 175 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGV 251 (688)
Q Consensus 175 ~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~~~~~g~ 251 (688)
.+++|..+...++.+.+..+. .....+++.|++||||+++|+++.+.. +.||+.++|..+.+.+...
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a----------~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~ 203 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLS----------RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIES 203 (463)
T ss_pred cceeecCHHHHHHHHHHHHHh----------CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHH
Confidence 457888777776665554432 233469999999999999999998764 5799999998764432211
Q ss_pred hh-HHHHHHHH--------HHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhc--CCC---
Q 005611 252 GS-ARIRDLFK--------RAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD--GFD--- 317 (688)
Q Consensus 252 ~~-~~~r~~f~--------~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld--~~~--- 317 (688)
.- ...+..|. .........|||||++.+.... +..+..++..-. ...
T Consensus 204 ~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~-------------------q~~ll~~l~~~~~~~~~~~~ 264 (463)
T TIGR01818 204 ELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDA-------------------QTRLLRVLADGEFYRVGGRT 264 (463)
T ss_pred HhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCHHH-------------------HHHHHHHHhcCcEEECCCCc
Confidence 00 00000010 0112335689999999875432 222233333211 001
Q ss_pred -CCCcEEEEEecCCCC-------cCCccccCCCccceeeeccCCChhhHH----HHHHHHhccC----cCC-CccC---H
Q 005611 318 -TGKGVIFLAATNRRD-------LLDPALLRPGRFDRKIRIRAPNAKGRT----EILKIHASKV----KMS-DSVD---L 377 (688)
Q Consensus 318 -~~~~viVIaaTN~~~-------~Ld~aL~r~gRf~~~I~i~~Pd~~eR~----~Il~~~l~~~----~~~-~~~d---l 377 (688)
...++.+|++|+..- .+.+.|.. |+. .+.+..|+..+|. .++++++.+. +.. ..++ +
T Consensus 265 ~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~ 341 (463)
T TIGR01818 265 PIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLN-VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEAL 341 (463)
T ss_pred eeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhC-cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHH
Confidence 112567888887532 12223332 332 3455556555444 4555554332 111 1222 3
Q ss_pred HHHHhh-CCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 005611 378 SSYAKN-LPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 420 (688)
Q Consensus 378 ~~la~~-t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al 420 (688)
..|.+. .+| +.++|++++++++..+ ....|+.+|+...+
T Consensus 342 ~~L~~~~wpg-NvreL~~~~~~~~~~~---~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 342 ERLKQLRWPG-NVRQLENLCRWLTVMA---SGDEVLVSDLPAEL 381 (463)
T ss_pred HHHHhCCCCC-hHHHHHHHHHHHHHhC---CCCcccHHhchHHH
Confidence 444444 344 7899999999998766 34578888887655
No 281
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=8.8e-07 Score=94.94 Aligned_cols=132 Identities=23% Similarity=0.344 Sum_probs=87.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCC-------------------------EEEeeCchh---HHH-HhhhhhHHH
Q 005611 206 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------------------------FYQMAGSEF---VEV-LVGVGSARI 256 (688)
Q Consensus 206 ~~~~gvLL~GppGtGKT~La~alA~~~~~~-------------------------~~~v~~~~~---~~~-~~g~~~~~~ 256 (688)
+.+..+||+||+|+|||++|+.+|+.+.+. ++.++...- .++ ...-+-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 677889999999999999999999976431 222222100 000 000134567
Q ss_pred HHHHHHHHh----CCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCC
Q 005611 257 RDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRD 332 (688)
Q Consensus 257 r~~f~~A~~----~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~ 332 (688)
|.+.+.+.. ....|+++|+++.+... ..+.+++.++... .++.+|.+|+.++
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~----------------------a~naLLk~LEep~--~~~~~Ilvth~~~ 154 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNLQ----------------------AANSLLKVLEEPP--PQVVFLLVSHAAD 154 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCHH----------------------HHHHHHHHHHhCc--CCCEEEEEeCChH
Confidence 777666643 23459999999886432 2256666666543 3455666888899
Q ss_pred cCCccccCCCccceeeeccCCChhhHHHHHHH
Q 005611 333 LLDPALLRPGRFDRKIRIRAPNAKGRTEILKI 364 (688)
Q Consensus 333 ~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~ 364 (688)
.+.+.+++ |. ..+.|++|+.++..+.+..
T Consensus 155 ~ll~ti~S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 155 KVLPTIKS--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred hChHHHHH--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 99999887 64 6888999998887777654
No 282
>PRK09183 transposase/IS protein; Provisional
Probab=98.42 E-value=1.3e-06 Score=90.82 Aligned_cols=74 Identities=31% Similarity=0.488 Sum_probs=51.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhHHHHhhh-hhHHHHHHHHHHHhCCCeEEEEcccchh
Q 005611 205 IKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGV-GSARIRDLFKRAKVNKPSVIFIDEIDAL 279 (688)
Q Consensus 205 ~~~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~~~~~g~-~~~~~r~~f~~A~~~~p~IL~LDEiD~l 279 (688)
+..+.+++|+||||||||+|+.+++..+ |..+..++..++...+... ........+... ...+++++|||++..
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 3456789999999999999999997654 6677777877776544321 111233444443 356789999999764
No 283
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.40 E-value=8.6e-06 Score=83.32 Aligned_cols=131 Identities=24% Similarity=0.264 Sum_probs=90.4
Q ss_pred CCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCC------------CCcC
Q 005611 267 KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNR------------RDLL 334 (688)
Q Consensus 267 ~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~------------~~~L 334 (688)
-|.+|||||++-+ +-+.-..+|..++. .-..++|.+||+ |.-+
T Consensus 288 vpGVLFIDEvHML-------------------DIEcFsFlNrAlE~------d~~PiiimaTNrgit~iRGTn~~SphGi 342 (454)
T KOG2680|consen 288 VPGVLFIDEVHML-------------------DIECFSFLNRALEN------DMAPIIIMATNRGITRIRGTNYRSPHGI 342 (454)
T ss_pred ccceEEEeeehhh-------------------hhHHHHHHHHHhhh------ccCcEEEEEcCCceEEeecCCCCCCCCC
Confidence 4889999999874 23344455554432 111245556664 3346
Q ss_pred CccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccC-HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccH
Q 005611 335 DPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILS 413 (688)
Q Consensus 335 d~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~d-l~~la~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~ 413 (688)
|-.++. |. ..|.-.+++.++.++||+..+......-+.| +..+......-|-+-..+|+..|...+.+++...+..
T Consensus 343 P~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~ 419 (454)
T KOG2680|consen 343 PIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEV 419 (454)
T ss_pred cHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeeh
Confidence 667776 54 4777888999999999999997765443333 3334444444467778889999999999999999999
Q ss_pred HHHHHHHHhhcc
Q 005611 414 SDMDDAVDRLTV 425 (688)
Q Consensus 414 ~di~~Al~~~~~ 425 (688)
+|+..+..-...
T Consensus 420 ~di~r~y~LFlD 431 (454)
T KOG2680|consen 420 DDIERVYRLFLD 431 (454)
T ss_pred hHHHHHHHHHhh
Confidence 999999876654
No 284
>PF13173 AAA_14: AAA domain
Probab=98.40 E-value=2.1e-06 Score=79.35 Aligned_cols=69 Identities=25% Similarity=0.288 Sum_probs=48.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC--CCEEEeeCchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchh
Q 005611 209 HGVLLEGPPGCGKTLVAKAIAGEAG--VPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDAL 279 (688)
Q Consensus 209 ~gvLL~GppGtGKT~La~alA~~~~--~~~~~v~~~~~~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l 279 (688)
+.++|+||.|+||||+++.+++... ...+++++.+.......... ....+.+.....+.+|||||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 4689999999999999999998876 77888888776543211111 223333322235679999999885
No 285
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.39 E-value=1.3e-06 Score=106.98 Aligned_cols=164 Identities=16% Similarity=0.224 Sum_probs=111.1
Q ss_pred eccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccccc--ccccCCCCcccccc-----
Q 005611 105 FYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRSKAE--ARVDGSTGVKFSDV----- 177 (688)
Q Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~v~f~dV----- 177 (688)
..+.+|.....+.+.+...+-.|+..+...++.......+..|+.+++...+....... ...+.+..+.+++.
T Consensus 450 ~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~i~~~sfsW~ 529 (1381)
T KOG0054|consen 450 LGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAIEIKNGSFSWD 529 (1381)
T ss_pred cCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCceEEEeeeeEecC
Confidence 34567777888888899999999999999999998899999999888877555443221 11122223333332
Q ss_pred -cccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCC---------CEEEeeCc-----
Q 005611 178 -AGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV---------PFYQMAGS----- 242 (688)
Q Consensus 178 -~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~---------~~~~v~~~----- 242 (688)
-+.++ .|+++ ++.++.+.-+.++||.|+|||+|..++.+++.. .+-+++-.
T Consensus 530 ~~~~~~---tL~dI-----------n~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~n 595 (1381)
T KOG0054|consen 530 SESPEP---TLKDI-----------NFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQN 595 (1381)
T ss_pred CCCCcc---cccce-----------eEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhC
Confidence 12221 33333 455677777999999999999999999997743 11111100
Q ss_pred ---------------hhHHH--------------------Hhhh------hhHHHHHHHHHHHhCCCeEEEEcccchhhh
Q 005611 243 ---------------EFVEV--------------------LVGV------GSARIRDLFKRAKVNKPSVIFIDEIDALAT 281 (688)
Q Consensus 243 ---------------~~~~~--------------------~~g~------~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~ 281 (688)
+.+++ .+|+ |+|++|..++||-..+.+|.+|||.=+..+
T Consensus 596 gTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVD 675 (1381)
T KOG0054|consen 596 GTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVD 675 (1381)
T ss_pred CcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhh
Confidence 11111 1222 889999999999999999999999877655
Q ss_pred h
Q 005611 282 R 282 (688)
Q Consensus 282 ~ 282 (688)
.
T Consensus 676 a 676 (1381)
T KOG0054|consen 676 A 676 (1381)
T ss_pred H
Confidence 4
No 286
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.39 E-value=1.8e-06 Score=92.53 Aligned_cols=69 Identities=22% Similarity=0.446 Sum_probs=50.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhHHHHhhhh---hHHHHHHHHHHHhCCCeEEEEcccchh
Q 005611 209 HGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGVG---SARIRDLFKRAKVNKPSVIFIDEIDAL 279 (688)
Q Consensus 209 ~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~~~~~g~~---~~~~r~~f~~A~~~~p~IL~LDEiD~l 279 (688)
.+++|+||+|||||+|+.++|+++ +..+++++..++...+.... .......+.. ....++|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~--l~~~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDL--LINCDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHH--hccCCEEEEeccCCC
Confidence 689999999999999999999976 77888899888877653321 1111111222 345679999999764
No 287
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.38 E-value=6.1e-07 Score=89.89 Aligned_cols=31 Identities=26% Similarity=0.397 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHhCCCeEEEEcccchhhhh
Q 005611 252 GSARIRDLFKRAKVNKPSVIFIDEIDALATR 282 (688)
Q Consensus 252 ~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~ 282 (688)
|++++|.++++|....|.+|++||..+.++.
T Consensus 144 GGQ~QRiaIARAL~~~PklLIlDEptSaLD~ 174 (252)
T COG1124 144 GGQRQRIAIARALIPEPKLLILDEPTSALDV 174 (252)
T ss_pred hhHHHHHHHHHHhccCCCEEEecCchhhhcH
Confidence 7899999999999999999999999987644
No 288
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.36 E-value=7.6e-07 Score=87.25 Aligned_cols=71 Identities=31% Similarity=0.537 Sum_probs=49.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhHHHHhhhh-hHHHHHHHHHHHhCCCeEEEEcccch
Q 005611 206 KPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGVG-SARIRDLFKRAKVNKPSVIFIDEIDA 278 (688)
Q Consensus 206 ~~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~~~~~g~~-~~~~r~~f~~A~~~~p~IL~LDEiD~ 278 (688)
+.+.+++|+||||||||+||.++++++ +.++..++.+++.+.+.... .......+.+.. .+++|+|||+..
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~ 119 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGY 119 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTS
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccce
Confidence 345789999999999999999999866 78899999999888754321 112233444433 456999999965
No 289
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.35 E-value=7.7e-06 Score=92.64 Aligned_cols=210 Identities=21% Similarity=0.278 Sum_probs=113.9
Q ss_pred ccccCCCCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEee-Cc
Q 005611 164 ARVDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA-GS 242 (688)
Q Consensus 164 ~~~~~~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~-~~ 242 (688)
...+...+.+.+|++-..+-.++++.++..... +....+-++|+||||||||++++.||++++..+..-. ..
T Consensus 8 ~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~-------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~ 80 (519)
T PF03215_consen 8 PWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFS-------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPV 80 (519)
T ss_pred ccchhcCCCCHHHhhccHHHHHHHHHHHHHHhc-------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCC
Confidence 345566678889998887777777777664211 1233446889999999999999999999987765432 21
Q ss_pred hhH------HHHhhhh---h--HHHHHHHH-----HHHh-----------CCCeEEEEcccchhhhhhcCCccCcchhhh
Q 005611 243 EFV------EVLVGVG---S--ARIRDLFK-----RAKV-----------NKPSVIFIDEIDALATRRQGIFKDTTDHLY 295 (688)
Q Consensus 243 ~~~------~~~~g~~---~--~~~r~~f~-----~A~~-----------~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~ 295 (688)
.+. ..+.+.. . ......|. .++. .++.||+|||+-.+....
T Consensus 81 ~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~------------ 148 (519)
T PF03215_consen 81 SFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD------------ 148 (519)
T ss_pred CccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh------------
Confidence 110 0111110 0 01111121 1111 246799999997654321
Q ss_pred hhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEe-cCC------CC--------cCCccccCCCccceeeeccCCChhhHHH
Q 005611 296 NAATQERETTLNQLLIELDGFDTGKGVIFLAA-TNR------RD--------LLDPALLRPGRFDRKIRIRAPNAKGRTE 360 (688)
Q Consensus 296 ~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaa-TN~------~~--------~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~ 360 (688)
.......+.+++.. .....+++|.+ ++. .. .+++.++...+ -.+|.|.+-...-...
T Consensus 149 ---~~~f~~~L~~~l~~----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~-i~~I~FNpIa~T~mkK 220 (519)
T PF03215_consen 149 ---TSRFREALRQYLRS----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPG-ITRIKFNPIAPTFMKK 220 (519)
T ss_pred ---HHHHHHHHHHHHHc----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCC-ceEEEecCCCHHHHHH
Confidence 12222233333221 22115555555 111 11 24555554223 3477887766655544
Q ss_pred HHHHHhccC--------cCCCccC-HHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 005611 361 ILKIHASKV--------KMSDSVD-LSSYAKNLPGWTGARLAQLVQEAALVAV 404 (688)
Q Consensus 361 Il~~~l~~~--------~~~~~~d-l~~la~~t~G~s~~dL~~lv~~A~~~A~ 404 (688)
.|+..+... ......+ ++.|+..+. +||+..++.-...+.
T Consensus 221 aL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s~----GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 221 ALKRILKKEARSSSGKNKVPDKQSVLDSIAESSN----GDIRSAINNLQFWCL 269 (519)
T ss_pred HHHHHHHHHhhhhcCCccCCChHHHHHHHHHhcC----chHHHHHHHHHHHhc
Confidence 444444322 1122222 666776644 599999988877775
No 290
>PTZ00243 ABC transporter; Provisional
Probab=98.34 E-value=8.9e-06 Score=103.87 Aligned_cols=54 Identities=7% Similarity=-0.038 Sum_probs=46.1
Q ss_pred ccceeccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccc
Q 005611 101 ILSKFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQG 154 (688)
Q Consensus 101 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 154 (688)
.|.+..+.+|.|.+.+++.++..+..|+..+...+..+.....+..|+.+++..
T Consensus 490 ~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~ 543 (1560)
T PTZ00243 490 VYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLEC 543 (1560)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 445567889999999999999999999999999888888888888888777754
No 291
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.32 E-value=2.3e-05 Score=96.40 Aligned_cols=111 Identities=16% Similarity=0.077 Sum_probs=78.3
Q ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc---c--ccccccCCCCcccccc-cccHH
Q 005611 109 YTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRS---K--AEARVDGSTGVKFSDV-AGIDE 182 (688)
Q Consensus 109 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---~--~~~~~~~~~~v~f~dV-~G~~~ 182 (688)
++.|..--.+.|..++...+..+............+-+|+.+-.+..+.... . +...=+..+.+.|+|+ .-|.+
T Consensus 1071 ~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp 1150 (1381)
T KOG0054|consen 1071 ISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRP 1150 (1381)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCC
Confidence 6678888888888888888888888777788888888888776554222111 1 1111145678999998 44432
Q ss_pred H-HHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHH
Q 005611 183 A-VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 230 (688)
Q Consensus 183 ~-k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~ 230 (688)
. ...|+.+ ++.++++..|-++|-+|+|||+|+.++.|
T Consensus 1151 ~lp~VLk~i-----------s~~I~p~eKVGIVGRTGaGKSSL~~aLFR 1188 (1381)
T KOG0054|consen 1151 NLPLVLKGI-----------SFTIKPGEKVGIVGRTGAGKSSLILALFR 1188 (1381)
T ss_pred CCcchhcCc-----------eEEEcCCceEEEeCCCCCCHHHHHHHHHH
Confidence 2 1122222 56688899999999999999999999998
No 292
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.31 E-value=1.3e-06 Score=89.69 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHhCCCeEEEEcccchhhhh
Q 005611 252 GSARIRDLFKRAKVNKPSVIFIDEIDALATR 282 (688)
Q Consensus 252 ~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~ 282 (688)
|++++|..+++|...+|.||++||-++.++-
T Consensus 141 GGerQrv~iArALaQ~~~iLLLDEPTs~LDi 171 (258)
T COG1120 141 GGERQRVLIARALAQETPILLLDEPTSHLDI 171 (258)
T ss_pred hhHHHHHHHHHHHhcCCCEEEeCCCccccCH
Confidence 7899999999999999999999999886643
No 293
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=5.5e-06 Score=97.45 Aligned_cols=130 Identities=33% Similarity=0.369 Sum_probs=84.8
Q ss_pred cccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhHHHH--hh
Q 005611 176 DVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVL--VG 250 (688)
Q Consensus 176 dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~~~~--~g 250 (688)
.|+|++++...+.+.+..-+..- .+. +++..++|.||.|+|||-||+++|... .-.++.++++++.+.. .|
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl-~~~---~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evsklig 638 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGL-KDP---NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIG 638 (898)
T ss_pred hccchHHHHHHHHHHHHhhhccc-CCC---CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccC
Confidence 46899999888888877643211 001 466679999999999999999999977 4568899999866521 11
Q ss_pred h----hhHHHHHHHHHH-HhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCC--------
Q 005611 251 V----GSARIRDLFKRA-KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD-------- 317 (688)
Q Consensus 251 ~----~~~~~r~~f~~A-~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~-------- 317 (688)
. -+...-..+..+ +.+..+||+|||||... . ..++.+++.+|.-.
T Consensus 639 sp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh-------------------~---~v~n~llq~lD~GrltDs~Gr~ 696 (898)
T KOG1051|consen 639 SPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAH-------------------P---DVLNILLQLLDRGRLTDSHGRE 696 (898)
T ss_pred CCcccccchhHHHHHHHHhcCCceEEEEechhhcC-------------------H---HHHHHHHHHHhcCccccCCCcE
Confidence 1 111122234444 44555899999999843 2 23355555555321
Q ss_pred -CCCcEEEEEecCCC
Q 005611 318 -TGKGVIFLAATNRR 331 (688)
Q Consensus 318 -~~~~viVIaaTN~~ 331 (688)
.-+++|||+|+|.-
T Consensus 697 Vd~kN~I~IMTsn~~ 711 (898)
T KOG1051|consen 697 VDFKNAIFIMTSNVG 711 (898)
T ss_pred eeccceEEEEecccc
Confidence 12568999999863
No 294
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.30 E-value=2.4e-06 Score=95.65 Aligned_cols=203 Identities=23% Similarity=0.339 Sum_probs=117.0
Q ss_pred cccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhHHHHhhh-
Q 005611 176 DVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGV- 251 (688)
Q Consensus 176 dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~~~~~g~- 251 (688)
.++|.......+.+-+..+. .....++++|++||||+++++++.... +.||+.++|..........
T Consensus 140 ~lig~s~~~~~~~~~i~~~~----------~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~ 209 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVA----------PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESE 209 (441)
T ss_pred ceEecCHHHHHHHHHHhhcc----------CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHH
Confidence 35566655555544333322 234579999999999999999997654 5799999998765433221
Q ss_pred ----hh-------HHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCC---
Q 005611 252 ----GS-------ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD--- 317 (688)
Q Consensus 252 ----~~-------~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~--- 317 (688)
.. ......+. ..+..+|||||++.+....+ ..++..++.-.
T Consensus 210 lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~ldei~~l~~~~q----------------------~~l~~~l~~~~~~~ 264 (441)
T PRK10365 210 LFGHEKGAFTGADKRREGRFV---EADGGTLFLDEIGDISPMMQ----------------------VRLLRAIQEREVQR 264 (441)
T ss_pred hcCCCCCCcCCCCcCCCCcee---ECCCCEEEEeccccCCHHHH----------------------HHHHHHHccCcEEe
Confidence 00 00011122 23466899999999765422 33444443211
Q ss_pred --C----CCcEEEEEecCCCCcCCccccCCCccce-------eeeccCCChhhHHH----HHHHHhccC----cCC-Ccc
Q 005611 318 --T----GKGVIFLAATNRRDLLDPALLRPGRFDR-------KIRIRAPNAKGRTE----ILKIHASKV----KMS-DSV 375 (688)
Q Consensus 318 --~----~~~viVIaaTN~~~~Ld~aL~r~gRf~~-------~I~i~~Pd~~eR~~----Il~~~l~~~----~~~-~~~ 375 (688)
. ..++.+|++|+.+-. ....+|+|.. .+.+..|+..+|.+ +.++++.+. ... ..+
T Consensus 265 ~~~~~~~~~~~rii~~t~~~~~---~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~ 341 (441)
T PRK10365 265 VGSNQTISVDVRLIAATHRDLA---AEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGF 341 (441)
T ss_pred CCCCceeeeceEEEEeCCCCHH---HHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCc
Confidence 1 124667888775321 2223344432 46667777777654 455554432 111 112
Q ss_pred C---HHHHHhhC-CCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 005611 376 D---LSSYAKNL-PGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 420 (688)
Q Consensus 376 d---l~~la~~t-~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al 420 (688)
+ +..+.... +| +.++|.++++++...+ ....|+.+|+...+
T Consensus 342 ~~~a~~~L~~~~wpg-N~reL~~~~~~~~~~~---~~~~i~~~~l~~~~ 386 (441)
T PRK10365 342 TPQAMDLLIHYDWPG-NIRELENAVERAVVLL---TGEYISERELPLAI 386 (441)
T ss_pred CHHHHHHHHhCCCCC-HHHHHHHHHHHHHHhC---CCCccchHhCchhh
Confidence 2 44555544 44 8899999999987654 44578888876544
No 295
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.29 E-value=5.2e-06 Score=76.43 Aligned_cols=73 Identities=25% Similarity=0.353 Sum_probs=45.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc--------CCCEEEeeCchhH------HHHhh---------hhhHHHHHHHHHH-
Q 005611 208 PHGVLLEGPPGCGKTLVAKAIAGEA--------GVPFYQMAGSEFV------EVLVG---------VGSARIRDLFKRA- 263 (688)
Q Consensus 208 ~~gvLL~GppGtGKT~La~alA~~~--------~~~~~~v~~~~~~------~~~~g---------~~~~~~r~~f~~A- 263 (688)
.+.++++||||+|||++++.+++.. ..+++.++++... ..... .....+...+.+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 3468999999999999999999977 6777777765443 11110 0122333444433
Q ss_pred HhCCCeEEEEcccchhh
Q 005611 264 KVNKPSVIFIDEIDALA 280 (688)
Q Consensus 264 ~~~~p~IL~LDEiD~l~ 280 (688)
......+|+|||+|.+.
T Consensus 84 ~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHCTEEEEEEETTHHHH
T ss_pred HhcCCeEEEEeChHhcC
Confidence 33444599999999964
No 296
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.28 E-value=2.1e-06 Score=82.95 Aligned_cols=79 Identities=19% Similarity=0.168 Sum_probs=56.4
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhcCC--CEEEeeCchh--------HHHHh-----hhhhHHHHHHHHHHHhC
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV--PFYQMAGSEF--------VEVLV-----GVGSARIRDLFKRAKVN 266 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~--~~~~v~~~~~--------~~~~~-----g~~~~~~r~~f~~A~~~ 266 (688)
++.++++..+.|.||+|+|||||.+.+++.... --+.++..+. ....+ =.+++++|..+++|...
T Consensus 20 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~ 99 (163)
T cd03216 20 SLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALAR 99 (163)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhc
Confidence 556788889999999999999999999986521 1122222111 11111 12567889999999999
Q ss_pred CCeEEEEcccchhh
Q 005611 267 KPSVIFIDEIDALA 280 (688)
Q Consensus 267 ~p~IL~LDEiD~l~ 280 (688)
+|.++++||..+-.
T Consensus 100 ~p~illlDEP~~~L 113 (163)
T cd03216 100 NARLLILDEPTAAL 113 (163)
T ss_pred CCCEEEEECCCcCC
Confidence 99999999997743
No 297
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.27 E-value=4.1e-06 Score=96.36 Aligned_cols=221 Identities=21% Similarity=0.255 Sum_probs=124.7
Q ss_pred cccccccHHHHHHHHHHHHHhcChhhhh--ccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEee-CchhHHHHhh
Q 005611 174 FSDVAGIDEAVEELQELVRYLKNPELFD--KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA-GSEFVEVLVG 250 (688)
Q Consensus 174 f~dV~G~~~~k~~L~~ii~~l~~~~~~~--~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~-~~~~~~~~~g 250 (688)
.-.|.|++.+|+.+.=. .+....... ...++..-++||+|.||+|||.|.+.+++.+-..++... ++.. +|
T Consensus 285 aPsIyG~e~VKkAilLq--LfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~----~G 358 (682)
T COG1241 285 APSIYGHEDVKKAILLQ--LFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSA----AG 358 (682)
T ss_pred cccccCcHHHHHHHHHH--hcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccc----cC
Confidence 34568888877766322 222222111 112344567999999999999999999997755544321 1111 12
Q ss_pred hhhHHHHHHH--H---HH---HhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCC------
Q 005611 251 VGSARIRDLF--K---RA---KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF------ 316 (688)
Q Consensus 251 ~~~~~~r~~f--~---~A---~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~------ 316 (688)
.+...+|+-. + .| ...+..|.+|||+|.+-... . +.+.+.|+.-
T Consensus 359 LTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~d-------------------r---~aihEaMEQQtIsIaK 416 (682)
T COG1241 359 LTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEED-------------------R---VAIHEAMEQQTISIAK 416 (682)
T ss_pred ceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChHH-------------------H---HHHHHHHHhcEeeecc
Confidence 1111111111 0 01 12356699999999854321 1 2333333321
Q ss_pred -----CCCCcEEEEEecCCCC-------------cCCccccCCCccceeeecc-CCChhhHHH----HHHHHhccC----
Q 005611 317 -----DTGKGVIFLAATNRRD-------------LLDPALLRPGRFDRKIRIR-APNAKGRTE----ILKIHASKV---- 369 (688)
Q Consensus 317 -----~~~~~viVIaaTN~~~-------------~Ld~aL~r~gRf~~~I~i~-~Pd~~eR~~----Il~~~l~~~---- 369 (688)
.-+.+.-|+||+|... +++++|++ |||..+-+. .|+.+.-+. ++..|....
T Consensus 417 AGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~ 494 (682)
T COG1241 417 AGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEET 494 (682)
T ss_pred cceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHHHHHHhccccccc
Confidence 1123456788999754 37889999 999876654 566543333 333332100
Q ss_pred --------------------------cCCCccC---HHHH-------H--------hhCCCCCHHHHHHHHHHHHHHHHH
Q 005611 370 --------------------------KMSDSVD---LSSY-------A--------KNLPGWTGARLAQLVQEAALVAVR 405 (688)
Q Consensus 370 --------------------------~~~~~~d---l~~l-------a--------~~t~G~s~~dL~~lv~~A~~~A~~ 405 (688)
...+.+. .+.+ - ..+...|.++|+.+++-|-..|..
T Consensus 495 ~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~ 574 (682)
T COG1241 495 ISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKM 574 (682)
T ss_pred cccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhh
Confidence 0101100 0011 0 011236789999999999999988
Q ss_pred hCCccccHHHHHHHHHhhc
Q 005611 406 KGHESILSSDMDDAVDRLT 424 (688)
Q Consensus 406 ~~~~~I~~~di~~Al~~~~ 424 (688)
+-++.++.+|+++|++-+.
T Consensus 575 rLS~~V~~eD~~eAi~lv~ 593 (682)
T COG1241 575 RLSDVVEEEDVDEAIRLVD 593 (682)
T ss_pred hccCCCCHHHHHHHHHHHH
Confidence 8899999999999987554
No 298
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.27 E-value=4.1e-05 Score=77.39 Aligned_cols=183 Identities=18% Similarity=0.245 Sum_probs=114.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC---CEEEeeCc-----hhHHHHhhh------------hhHHHHHHHHHH-HhCCC
Q 005611 210 GVLLEGPPGCGKTLVAKAIAGEAGV---PFYQMAGS-----EFVEVLVGV------------GSARIRDLFKRA-KVNKP 268 (688)
Q Consensus 210 gvLL~GppGtGKT~La~alA~~~~~---~~~~v~~~-----~~~~~~~g~------------~~~~~r~~f~~A-~~~~p 268 (688)
-+.++|+.|||||++.|++....+- ..++++.+ .+.+.++.+ .++..+.+.+.. +...|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 4789999999999999977765532 22333332 222322222 122233333333 34567
Q ss_pred eEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhc-CCCCCCcEEEEEecCCCCcCCccccCC------
Q 005611 269 SVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD-GFDTGKGVIFLAATNRRDLLDPALLRP------ 341 (688)
Q Consensus 269 ~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld-~~~~~~~viVIaaTN~~~~Ld~aL~r~------ 341 (688)
.++++||++.+.+... .. -.++.+++ ...+.-.++.|+-.. |.+.++.+
T Consensus 133 v~l~vdEah~L~~~~l-------------------e~-Lrll~nl~~~~~~~l~ivL~Gqp~----L~~~lr~~~l~e~~ 188 (269)
T COG3267 133 VVLMVDEAHDLNDSAL-------------------EA-LRLLTNLEEDSSKLLSIVLIGQPK----LRPRLRLPVLRELE 188 (269)
T ss_pred eEEeehhHhhhChhHH-------------------HH-HHHHHhhcccccCceeeeecCCcc----cchhhchHHHHhhh
Confidence 8999999998765421 11 22333332 222223455555332 22222211
Q ss_pred CccceeeeccCCChhhHHHHHHHHhccCcCCCc----cCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHH
Q 005611 342 GRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS----VDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMD 417 (688)
Q Consensus 342 gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~----~dl~~la~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~ 417 (688)
-|++-.|++++.+.++-...+++++++...+++ -.+..+...+.| .|+.+.++|..|...|...+.+.|+...++
T Consensus 189 ~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 189 QRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred heEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 177777889999999899999999877544432 236667777777 699999999999999999999888877654
No 299
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.26 E-value=1.6e-06 Score=92.93 Aligned_cols=84 Identities=19% Similarity=0.281 Sum_probs=64.9
Q ss_pred cc-cccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-------CEEEeeC----
Q 005611 174 FS-DVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV-------PFYQMAG---- 241 (688)
Q Consensus 174 f~-dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~-------~~~~v~~---- 241 (688)
|+ +++|++++++++-+.+..... ..+ ...+.++|+|||||||||+|++|++.++. +++.+..
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a~-----g~~-~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~ 122 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAAQ-----GLE-ERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEE 122 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHHh-----cCC-CCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCC
Confidence 56 899999998777665543221 111 23466899999999999999999999976 8999988
Q ss_pred chhHHHHhhhhhHHHHHHHHHH
Q 005611 242 SEFVEVLVGVGSARIRDLFKRA 263 (688)
Q Consensus 242 ~~~~~~~~g~~~~~~r~~f~~A 263 (688)
+...+..++.....+|..|...
T Consensus 123 sp~~e~Pl~l~p~~~r~~~~~~ 144 (361)
T smart00763 123 SPMHEDPLHLFPDELREDLEDE 144 (361)
T ss_pred CCCccCCcccCCHHHHHHHHHH
Confidence 7777777788888888888554
No 300
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.26 E-value=1.1e-06 Score=82.25 Aligned_cols=81 Identities=30% Similarity=0.545 Sum_probs=53.9
Q ss_pred cccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcC---CCEEEeeCchhHHHHhhhhhH
Q 005611 178 AGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG---VPFYQMAGSEFVEVLVGVGSA 254 (688)
Q Consensus 178 ~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~---~~~~~v~~~~~~~~~~g~~~~ 254 (688)
+|.....+++++-+..+. +....|+|+|++||||+++|+++....+ .+|+.++|....
T Consensus 1 vG~S~~~~~l~~~l~~~a----------~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA----------KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHH----------CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCCHHHHHHHHHHHHHh----------CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 356666777776666543 2334699999999999999999998764 356666665432
Q ss_pred HHHHHHHHHHhCCCeEEEEcccchhhhh
Q 005611 255 RIRDLFKRAKVNKPSVIFIDEIDALATR 282 (688)
Q Consensus 255 ~~r~~f~~A~~~~p~IL~LDEiD~l~~~ 282 (688)
.+.++.+ ....|+|+|+|.+...
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L~~~ 84 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRLSPE 84 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS-HH
T ss_pred --HHHHHHc---CCCEEEECChHHCCHH
Confidence 3344443 5569999999997543
No 301
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.24 E-value=5.6e-06 Score=92.25 Aligned_cols=222 Identities=17% Similarity=0.211 Sum_probs=125.9
Q ss_pred cccccccHHHHHHHHHHHHHhcChhhh--hccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHHHHhhh
Q 005611 174 FSDVAGIDEAVEELQELVRYLKNPELF--DKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGV 251 (688)
Q Consensus 174 f~dV~G~~~~k~~L~~ii~~l~~~~~~--~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~~~~g~ 251 (688)
|-.|.|.+.+|.-+.-. .+-...++ ....++..-+|+|+|.||+|||-+.++.++-+-...+.. +..- .-.|.
T Consensus 344 ~PsIyGhe~VK~GilL~--LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYts-GkaS--SaAGL 418 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLS--LFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTS-GKAS--SAAGL 418 (764)
T ss_pred CccccchHHHHhhHHHH--HhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEec-Cccc--ccccc
Confidence 56678999888765322 22222211 233455666899999999999999999998665443322 1110 00111
Q ss_pred hhHHHHH------HHH-HH-HhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCC-------
Q 005611 252 GSARIRD------LFK-RA-KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF------- 316 (688)
Q Consensus 252 ~~~~~r~------~f~-~A-~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~------- 316 (688)
+..-+++ .++ -| ...+-.|-.|||+|.+..+.+ ..+.+.|+.-
T Consensus 419 TaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dq----------------------vAihEAMEQQtISIaKA 476 (764)
T KOG0480|consen 419 TAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQ----------------------VAIHEAMEQQTISIAKA 476 (764)
T ss_pred eEEEEecCCCCceeeecCcEEEccCceEEechhcccChHhH----------------------HHHHHHHHhheehheec
Confidence 0000000 000 00 112344889999999764332 2333333321
Q ss_pred ----CCCCcEEEEEecCCCC-------------cCCccccCCCccceee-eccCCChhhHHHHHHHHhccCcC-C-----
Q 005611 317 ----DTGKGVIFLAATNRRD-------------LLDPALLRPGRFDRKI-RIRAPNAKGRTEILKIHASKVKM-S----- 372 (688)
Q Consensus 317 ----~~~~~viVIaaTN~~~-------------~Ld~aL~r~gRf~~~I-~i~~Pd~~eR~~Il~~~l~~~~~-~----- 372 (688)
.-+.+.-||||+|... .+++++++ |||..+ -+.-|++..-..|-++.+..... .
T Consensus 477 Gv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~ 554 (764)
T KOG0480|consen 477 GVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATER 554 (764)
T ss_pred ceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhccccccccc
Confidence 1123456788988643 37889999 999854 45667765544444433322110 0
Q ss_pred --------------------CccC----------HHHH--------HhhCCCCCHHHHHHHHHHHHHHHHHhCCccccHH
Q 005611 373 --------------------DSVD----------LSSY--------AKNLPGWTGARLAQLVQEAALVAVRKGHESILSS 414 (688)
Q Consensus 373 --------------------~~~d----------l~~l--------a~~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~ 414 (688)
+... +..+ .+.+.+.|.++|+.+++-+-.+|.-+-++.+|.+
T Consensus 555 ~~~~~~e~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~ 634 (764)
T KOG0480|consen 555 VCVYTLEQVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKE 634 (764)
T ss_pred cccccHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHH
Confidence 0000 0011 0112356889999999998888888888899999
Q ss_pred HHHHHHHhhc
Q 005611 415 DMDDAVDRLT 424 (688)
Q Consensus 415 di~~Al~~~~ 424 (688)
|+++|++-..
T Consensus 635 ~v~ea~eLlk 644 (764)
T KOG0480|consen 635 DVEEAVELLK 644 (764)
T ss_pred HHHHHHHHHH
Confidence 9999876553
No 302
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.22 E-value=4.8e-06 Score=79.01 Aligned_cols=72 Identities=24% Similarity=0.279 Sum_probs=49.1
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhHHHHhh----------------------h--hhHHHHHHHHHH
Q 005611 211 VLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVG----------------------V--GSARIRDLFKRA 263 (688)
Q Consensus 211 vLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~~~~~g----------------------~--~~~~~r~~f~~A 263 (688)
++|+||||+|||++++.++..+ +.+.+.++.......... . .....+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 456666665443321110 0 111122345566
Q ss_pred HhCCCeEEEEcccchhhhh
Q 005611 264 KVNKPSVIFIDEIDALATR 282 (688)
Q Consensus 264 ~~~~p~IL~LDEiD~l~~~ 282 (688)
....|.+++|||+..+.+.
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 7778999999999998754
No 303
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.22 E-value=1.3e-05 Score=81.39 Aligned_cols=172 Identities=19% Similarity=0.204 Sum_probs=109.7
Q ss_pred CcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCC---C------------
Q 005611 171 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV---P------------ 235 (688)
Q Consensus 171 ~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~---~------------ 235 (688)
+-+++.+.+.++....|+.+...- --.++++|||+|+||-|.+.++-+++.. +
T Consensus 9 pksl~~l~~~~e~~~~Lksl~~~~------------d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tp 76 (351)
T KOG2035|consen 9 PKSLDELIYHEELANLLKSLSSTG------------DFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTP 76 (351)
T ss_pred cchhhhcccHHHHHHHHHHhcccC------------CCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecC
Confidence 445677778888877776663311 0126899999999999999999886621 1
Q ss_pred --------------EEEeeCchhHHHHhhhhh-HHHHHHHHHHHh---------CCCeEEEEcccchhhhhhcCCccCcc
Q 005611 236 --------------FYQMAGSEFVEVLVGVGS-ARIRDLFKRAKV---------NKPSVIFIDEIDALATRRQGIFKDTT 291 (688)
Q Consensus 236 --------------~~~v~~~~~~~~~~g~~~-~~~r~~f~~A~~---------~~p~IL~LDEiD~l~~~~~~~~~~~~ 291 (688)
.+.++.++ .|.-. --+.+++..... ..-.+++|.|+|.+....+
T Consensus 77 S~kklEistvsS~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ------- 144 (351)
T KOG2035|consen 77 SKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQ------- 144 (351)
T ss_pred CCceEEEEEecccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHH-------
Confidence 11222222 11111 112333333221 2345999999999875532
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcC
Q 005611 292 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKM 371 (688)
Q Consensus 292 ~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~ 371 (688)
..|-..|+.+. .++-+|..+|....+-+++++ | ...|.+|.|+.++...++...+.+.++
T Consensus 145 ---------------~aLRRTMEkYs--~~~RlIl~cns~SriIepIrS--R-Cl~iRvpaps~eeI~~vl~~v~~kE~l 204 (351)
T KOG2035|consen 145 ---------------HALRRTMEKYS--SNCRLILVCNSTSRIIEPIRS--R-CLFIRVPAPSDEEITSVLSKVLKKEGL 204 (351)
T ss_pred ---------------HHHHHHHHHHh--cCceEEEEecCcccchhHHhh--h-eeEEeCCCCCHHHHHHHHHHHHHHhcc
Confidence 12222333333 456677789999999999998 6 458899999999999999999987666
Q ss_pred CCccC-HHHHHhhCCC
Q 005611 372 SDSVD-LSSYAKNLPG 386 (688)
Q Consensus 372 ~~~~d-l~~la~~t~G 386 (688)
.-..+ +.++++.+.|
T Consensus 205 ~lp~~~l~rIa~kS~~ 220 (351)
T KOG2035|consen 205 QLPKELLKRIAEKSNR 220 (351)
T ss_pred cCcHHHHHHHHHHhcc
Confidence 54333 5677777655
No 304
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.21 E-value=1.2e-06 Score=93.82 Aligned_cols=31 Identities=29% Similarity=0.386 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHhCCCeEEEEcccchhhhh
Q 005611 252 GSARIRDLFKRAKVNKPSVIFIDEIDALATR 282 (688)
Q Consensus 252 ~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~ 282 (688)
+++++|.++++|....|.+|++||--+.++.
T Consensus 139 GGQqQRVALARAL~~~P~vLLLDEPlSaLD~ 169 (352)
T COG3842 139 GGQQQRVALARALVPEPKVLLLDEPLSALDA 169 (352)
T ss_pred hHHHHHHHHHHHhhcCcchhhhcCcccchhH
Confidence 7889999999999999999999998765543
No 305
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.20 E-value=6.7e-06 Score=86.63 Aligned_cols=139 Identities=22% Similarity=0.268 Sum_probs=83.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCE-EEeeCchhHHHHhhh-----hhHHHHHHHHHHHhCCCeEEEEcccchh
Q 005611 206 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPF-YQMAGSEFVEVLVGV-----GSARIRDLFKRAKVNKPSVIFIDEIDAL 279 (688)
Q Consensus 206 ~~~~gvLL~GppGtGKT~La~alA~~~~~~~-~~v~~~~~~~~~~g~-----~~~~~r~~f~~A~~~~p~IL~LDEiD~l 279 (688)
.+++|+.|||+-|.|||+|.......+..+- ..+....|....... +....-..++.-...+..+|++||+.-
T Consensus 63 ~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~~~~vLCfDEF~V- 141 (367)
T COG1485 63 GPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPIADELAAETRVLCFDEFEV- 141 (367)
T ss_pred CCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHhcCCEEEeeeeee-
Confidence 4789999999999999999999988774432 233333443221111 111111112222334556999999974
Q ss_pred hhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCC-CCcCCccccCCCccceeeeccCCChhhH
Q 005611 280 ATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNR-RDLLDPALLRPGRFDRKIRIRAPNAKGR 358 (688)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~-~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR 358 (688)
.+-...-.+..|+.+|= .++|++++|+|. |+.|-+.=+...||-..
T Consensus 142 ------------------tDI~DAMiL~rL~~~Lf----~~GV~lvaTSN~~P~~LY~dGlqR~~FLP~----------- 188 (367)
T COG1485 142 ------------------TDIADAMILGRLLEALF----ARGVVLVATSNTAPDNLYKDGLQRERFLPA----------- 188 (367)
T ss_pred ------------------cChHHHHHHHHHHHHHH----HCCcEEEEeCCCChHHhcccchhHHhhHHH-----------
Confidence 22233455677777763 258999999997 55553322222344322
Q ss_pred HHHHHHHhccCcCCCccCHH
Q 005611 359 TEILKIHASKVKMSDSVDLS 378 (688)
Q Consensus 359 ~~Il~~~l~~~~~~~~~dl~ 378 (688)
.++++.++.-+.+....|+.
T Consensus 189 I~li~~~~~v~~vD~~~DYR 208 (367)
T COG1485 189 IDLIKSHFEVVNVDGPVDYR 208 (367)
T ss_pred HHHHHHheEEEEecCCcccc
Confidence 36788888777777666653
No 306
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.19 E-value=2.6e-05 Score=81.70 Aligned_cols=211 Identities=20% Similarity=0.306 Sum_probs=122.8
Q ss_pred CCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhHH
Q 005611 170 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE 246 (688)
Q Consensus 170 ~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~~ 246 (688)
....|+.+++.....+.+.+-...+. .....+||.|.+||||-.+|++..... ..||+.++|..+.+
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA~k~A----------mlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe 268 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQAQKLA----------MLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPE 268 (511)
T ss_pred cccchHHHhhccHHHHHHHHHHHHhh----------ccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCch
Confidence 34457777776655555443322111 112348999999999999999876544 68999999987765
Q ss_pred HH-----hhh--hhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhc-CC--
Q 005611 247 VL-----VGV--GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD-GF-- 316 (688)
Q Consensus 247 ~~-----~g~--~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld-~~-- 316 (688)
.. .|. +.+.-...|+.|... -+|+|||..+.+. .+. .||.-+. +-
T Consensus 269 ~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEmSp~-------------------lQa---KLLRFL~DGtFR 323 (511)
T COG3283 269 DAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEMSPR-------------------LQA---KLLRFLNDGTFR 323 (511)
T ss_pred hHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhcCHH-------------------HHH---HHHHHhcCCcee
Confidence 43 222 223445677776544 7999999775433 222 3333332 21
Q ss_pred --CC----CCcEEEEEecCCCC--cCCccccCCCccce--eeeccCCChhhHHH--------HHHHHhccCcCC-CccC-
Q 005611 317 --DT----GKGVIFLAATNRRD--LLDPALLRPGRFDR--KIRIRAPNAKGRTE--------ILKIHASKVKMS-DSVD- 376 (688)
Q Consensus 317 --~~----~~~viVIaaTN~~~--~Ld~aL~r~gRf~~--~I~i~~Pd~~eR~~--------Il~~~l~~~~~~-~~~d- 376 (688)
.. .-+|.||+||..+- .....-.|..-|.+ +..+..|...+|.+ ++..++.+.+.. +..+
T Consensus 324 RVGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~ 403 (511)
T COG3283 324 RVGEDHEVHVDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAA 403 (511)
T ss_pred ecCCcceEEEEEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCH
Confidence 11 12589999998642 22222222222322 66777777777643 233444444433 2222
Q ss_pred --HHHHHhh-CCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHH
Q 005611 377 --LSSYAKN-LPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDA 419 (688)
Q Consensus 377 --l~~la~~-t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~A 419 (688)
+..+.+. ++| +.+++.|.+.+|+... ....++.+|+.-+
T Consensus 404 ~~~~~L~~y~WpG-NVRqL~N~iyRA~s~~---Eg~~l~i~~i~Lp 445 (511)
T COG3283 404 DLLTVLTRYAWPG-NVRQLKNAIYRALTLL---EGYELRIEDILLP 445 (511)
T ss_pred HHHHHHHHcCCCc-cHHHHHHHHHHHHHHh---ccCccchhhcccC
Confidence 2333333 455 8999999999998776 3355666666543
No 307
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.19 E-value=3.7e-06 Score=82.20 Aligned_cols=79 Identities=16% Similarity=0.180 Sum_probs=53.9
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-------------CEEEeeCchhHHHHh------h------hhhHHH
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV-------------PFYQMAGSEFVEVLV------G------VGSARI 256 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~-------------~~~~v~~~~~~~~~~------g------~~~~~~ 256 (688)
++.++++.-+.|.||+|+|||||.+++....+. ++..+.-.++.+.+- . .+++++
T Consensus 15 sl~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~q 94 (176)
T cd03238 15 DVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQ 94 (176)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHH
Confidence 556777888999999999999999999743221 111111111111110 0 146788
Q ss_pred HHHHHHHHhCC--CeEEEEcccchhh
Q 005611 257 RDLFKRAKVNK--PSVIFIDEIDALA 280 (688)
Q Consensus 257 r~~f~~A~~~~--p~IL~LDEiD~l~ 280 (688)
|..+.+|...+ |.++++||..+-.
T Consensus 95 rl~laral~~~~~p~llLlDEPt~~L 120 (176)
T cd03238 95 RVKLASELFSEPPGTLFILDEPSTGL 120 (176)
T ss_pred HHHHHHHHhhCCCCCEEEEeCCcccC
Confidence 89999999999 9999999997744
No 308
>PRK06921 hypothetical protein; Provisional
Probab=98.19 E-value=7.9e-06 Score=85.26 Aligned_cols=69 Identities=30% Similarity=0.363 Sum_probs=47.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc----CCCEEEeeCchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcccch
Q 005611 207 PPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDA 278 (688)
Q Consensus 207 ~~~gvLL~GppGtGKT~La~alA~~~----~~~~~~v~~~~~~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~ 278 (688)
...+++|+||||+|||+|+.++|+++ +..+++++..++.......- ......+.. ....++|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~--~~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNR--MKKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHH--hcCCCEEEEecccc
Confidence 35689999999999999999999875 56777888777655432211 111222222 34567999999944
No 309
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.16 E-value=5.7e-06 Score=92.98 Aligned_cols=204 Identities=23% Similarity=0.324 Sum_probs=119.2
Q ss_pred cccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhc--CCCEEEeeCchhHHHHhhh----
Q 005611 178 AGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA--GVPFYQMAGSEFVEVLVGV---- 251 (688)
Q Consensus 178 ~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~--~~~~~~v~~~~~~~~~~g~---- 251 (688)
++.+...+.+...+..+.. ..-.+++.|.|||||-.+++++-... .-||+.++|..+.+...+.
T Consensus 316 ~~~d~s~a~l~rk~~rv~~----------~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFG 385 (606)
T COG3284 316 PLLDPSRATLLRKAERVAA----------TDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFG 385 (606)
T ss_pred cccCHHHHHHHHHHHHHhh----------cCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhc
Confidence 4555555555444443322 22359999999999999999997654 6799999998776654332
Q ss_pred -hh--------HHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHH-----hcCCC
Q 005611 252 -GS--------ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIE-----LDGFD 317 (688)
Q Consensus 252 -~~--------~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~-----ld~~~ 317 (688)
.+ +..+..+..|.. ..+|+|||..+.-. .+..+-+.|++ +.+-.
T Consensus 386 y~~GafTga~~kG~~g~~~~A~g---GtlFldeIgd~p~~-------------------~Qs~LLrVl~e~~v~p~g~~~ 443 (606)
T COG3284 386 YVAGAFTGARRKGYKGKLEQADG---GTLFLDEIGDMPLA-------------------LQSRLLRVLQEGVVTPLGGTR 443 (606)
T ss_pred cCccccccchhccccccceecCC---CccHHHHhhhchHH-------------------HHHHHHHHHhhCceeccCCcc
Confidence 11 112223333332 38999999875422 22233333433 22222
Q ss_pred CCCcEEEEEecCCCCcCCccccCCCccce-------eeeccCCChhhHHH---HHHHHhccCc-CCCccC----HHHHHh
Q 005611 318 TGKGVIFLAATNRRDLLDPALLRPGRFDR-------KIRIRAPNAKGRTE---ILKIHASKVK-MSDSVD----LSSYAK 382 (688)
Q Consensus 318 ~~~~viVIaaTN~~~~Ld~aL~r~gRf~~-------~I~i~~Pd~~eR~~---Il~~~l~~~~-~~~~~d----l~~la~ 382 (688)
..-.|-||+||+++-. .+.+.|||.+ ...+.+|...+|.+ .+.+++.+.. ....++ -.-++.
T Consensus 444 ~~vdirvi~ath~dl~---~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~ 520 (606)
T COG3284 444 IKVDIRVIAATHRDLA---QLVEQGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAY 520 (606)
T ss_pred eeEEEEEEeccCcCHH---HHHHcCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhC
Confidence 2234789999997433 4556677765 44566777777654 4444443322 112222 223455
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 005611 383 NLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 420 (688)
Q Consensus 383 ~t~G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al 420 (688)
..+| +.++|.++++.++..+ ....+...|+...+
T Consensus 521 ~WPG-Nirel~~v~~~~~~l~---~~g~~~~~dlp~~l 554 (606)
T COG3284 521 RWPG-NIRELDNVIERLAALS---DGGRIRVSDLPPEL 554 (606)
T ss_pred CCCC-cHHHHHHHHHHHHHcC---CCCeeEcccCCHHH
Confidence 6777 8999999999988776 33445555554443
No 310
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.16 E-value=4.2e-07 Score=97.84 Aligned_cols=218 Identities=19% Similarity=0.230 Sum_probs=111.9
Q ss_pred cccccHHHHHHHHHHHHHhcChhhh--hccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHH-----HH
Q 005611 176 DVAGIDEAVEELQELVRYLKNPELF--DKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE-----VL 248 (688)
Q Consensus 176 dV~G~~~~k~~L~~ii~~l~~~~~~--~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~-----~~ 248 (688)
+|+|++.+|..+-=.+ +...... .....+..-++||+|.||+|||.|.+.++.-+.... ++++..... ..
T Consensus 25 ~i~g~~~iK~aill~L--~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~ 101 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQL--FGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASV 101 (331)
T ss_dssp TTTT-HHHHHHHCCCC--TT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEE
T ss_pred cCcCcHHHHHHHHHHH--HhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCcccee
Confidence 4688888776652110 1111100 001123445799999999999999998876543333 222211000 00
Q ss_pred ---hhhhhHHH-HHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCC----CC--
Q 005611 249 ---VGVGSARI-RDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF----DT-- 318 (688)
Q Consensus 249 ---~g~~~~~~-r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~----~~-- 318 (688)
...++-.+ ..++-.| +..|++|||+|.+-... ...|++.|+.- .+
T Consensus 102 ~~d~~~~~~~leaGalvla---d~GiccIDe~dk~~~~~----------------------~~~l~eaMEqq~isi~kag 156 (331)
T PF00493_consen 102 SRDPVTGEWVLEAGALVLA---DGGICCIDEFDKMKEDD----------------------RDALHEAMEQQTISIAKAG 156 (331)
T ss_dssp CCCGGTSSECEEE-HHHHC---TTSEEEECTTTT--CHH----------------------HHHHHHHHHCSCEEECTSS
T ss_pred ccccccceeEEeCCchhcc---cCceeeecccccccchH----------------------HHHHHHHHHcCeeccchhh
Confidence 00000000 1123333 44599999999864321 14455555531 11
Q ss_pred -----CCcEEEEEecCCCC-------------cCCccccCCCccceeeec-cCCChhhHHHHHHHHhccCcCC-------
Q 005611 319 -----GKGVIFLAATNRRD-------------LLDPALLRPGRFDRKIRI-RAPNAKGRTEILKIHASKVKMS------- 372 (688)
Q Consensus 319 -----~~~viVIaaTN~~~-------------~Ld~aL~r~gRf~~~I~i-~~Pd~~eR~~Il~~~l~~~~~~------- 372 (688)
+.+.-|+|++|... .+++.|++ |||..+.+ ..|+.+.-..+.++.++.....
T Consensus 157 i~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~ 234 (331)
T PF00493_consen 157 IVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKK 234 (331)
T ss_dssp SEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT---S------
T ss_pred hcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEecccccccccccc
Confidence 23467899999754 37889998 99998765 5666555555555444322110
Q ss_pred --C---ccC------HHHHHh------------------------------hCCCCCHHHHHHHHHHHHHHHHHhCCccc
Q 005611 373 --D---SVD------LSSYAK------------------------------NLPGWTGARLAQLVQEAALVAVRKGHESI 411 (688)
Q Consensus 373 --~---~~d------l~~la~------------------------------~t~G~s~~dL~~lv~~A~~~A~~~~~~~I 411 (688)
. ..+ +-.+++ .....|.+.|+.+++-|...|..+-++.|
T Consensus 235 ~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V 314 (331)
T PF00493_consen 235 IKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEV 314 (331)
T ss_dssp --SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSEC
T ss_pred ccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCce
Confidence 0 000 111122 11235678899999999999999999999
Q ss_pred cHHHHHHHHHhh
Q 005611 412 LSSDMDDAVDRL 423 (688)
Q Consensus 412 ~~~di~~Al~~~ 423 (688)
+.+|+..|+.-.
T Consensus 315 ~~~Dv~~Ai~L~ 326 (331)
T PF00493_consen 315 TEEDVEEAIRLF 326 (331)
T ss_dssp SHHHHHHHHHHH
T ss_pred eHHHHHHHHHHH
Confidence 999999998754
No 311
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.16 E-value=5.8e-05 Score=83.31 Aligned_cols=172 Identities=16% Similarity=0.247 Sum_probs=90.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCc-------------hhHHHHhhhhhHHHHHHHHHHH-----------
Q 005611 209 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS-------------EFVEVLVGVGSARIRDLFKRAK----------- 264 (688)
Q Consensus 209 ~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~-------------~~~~~~~g~~~~~~r~~f~~A~----------- 264 (688)
+-+||+||+||||||.++.|+.++|..+..-+-+ .+........-........++.
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~ 190 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDD 190 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccc
Confidence 4588999999999999999999998876654311 1111001101111112223331
Q ss_pred -hCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCC--
Q 005611 265 -VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRP-- 341 (688)
Q Consensus 265 -~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~-- 341 (688)
..++.+|++||+-...... ....+..+|.++-....-.-|++|.-++.++..++.-+.+
T Consensus 191 ~~~~~~liLveDLPn~~~~d------------------~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d 252 (634)
T KOG1970|consen 191 LRTDKKLILVEDLPNQFYRD------------------DSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKD 252 (634)
T ss_pred cccCceEEEeeccchhhhhh------------------hHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhh
Confidence 2356799999997654321 2233344444433223333344444344444433332221
Q ss_pred ----CccceeeeccCCChhhHHHHHHHHhccCcC-------CCccCHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 005611 342 ----GRFDRKIRIRAPNAKGRTEILKIHASKVKM-------SDSVDLSSYAKNLPGWTGARLAQLVQEAALVA 403 (688)
Q Consensus 342 ----gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~-------~~~~dl~~la~~t~G~s~~dL~~lv~~A~~~A 403 (688)
.|.. +|.|.+-..---+..|+..+..... .....++.++.. +++||+..++.-...+
T Consensus 253 ~q~~~ri~-~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~----s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 253 IQEEPRIS-NISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQG----SGGDIRSAINSLQLSS 320 (634)
T ss_pred hhhccCcc-eEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHHh----cCccHHHHHhHhhhhc
Confidence 1332 5666665555555555555543221 122334555554 4569999888877775
No 312
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.15 E-value=8.5e-06 Score=77.00 Aligned_cols=77 Identities=23% Similarity=0.378 Sum_probs=54.4
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC--EEEeeCch---hHHHHhhhhhHHHHHHHHHHHhCCCeEEEEccc
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--FYQMAGSE---FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEI 276 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~--~~~v~~~~---~~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEi 276 (688)
++.++++..+.|.||+|+|||||++++++..... -+.++... +... -.+++++|..+++|...+|.++++||.
T Consensus 20 ~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~--lS~G~~~rv~laral~~~p~illlDEP 97 (144)
T cd03221 20 SLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ--LSGGEKMRLALAKLLLENPNLLLLDEP 97 (144)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc--CCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4567788889999999999999999999865210 01111100 0000 124567888899999999999999999
Q ss_pred chhh
Q 005611 277 DALA 280 (688)
Q Consensus 277 D~l~ 280 (688)
.+-.
T Consensus 98 ~~~L 101 (144)
T cd03221 98 TNHL 101 (144)
T ss_pred ccCC
Confidence 8744
No 313
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.13 E-value=4.9e-06 Score=85.89 Aligned_cols=60 Identities=25% Similarity=0.292 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 005611 252 GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRR 331 (688)
Q Consensus 252 ~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~ 331 (688)
+++++|.++++|....|.+|+|||--..++.. ...+.++++..+... .++.++..|++.
T Consensus 140 GGQrQRVALARALA~eP~vLLLDEPf~ALDa~--------------vr~~lr~wLr~~~~~-------~~~ttvfVTHD~ 198 (345)
T COG1118 140 GGQRQRVALARALAVEPKVLLLDEPFGALDAK--------------VRKELRRWLRKLHDR-------LGVTTVFVTHDQ 198 (345)
T ss_pred hHHHHHHHHHHHhhcCCCeEeecCCchhhhHH--------------HHHHHHHHHHHHHHh-------hCceEEEEeCCH
Confidence 78999999999999999999999976654332 334444555554433 334555566654
Q ss_pred C
Q 005611 332 D 332 (688)
Q Consensus 332 ~ 332 (688)
+
T Consensus 199 e 199 (345)
T COG1118 199 E 199 (345)
T ss_pred H
Confidence 4
No 314
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.13 E-value=3.2e-06 Score=86.48 Aligned_cols=81 Identities=30% Similarity=0.350 Sum_probs=59.7
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC--EEEeeCch--------hHHH---H---hh-------------hh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--FYQMAGSE--------FVEV---L---VG-------------VG 252 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~--~~~v~~~~--------~~~~---~---~g-------------~~ 252 (688)
++.++.+..+-|+|++||||||++|.+.+-..-. -+...+.+ ..+. . +| .|
T Consensus 33 sf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSG 112 (268)
T COG4608 33 SFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSG 112 (268)
T ss_pred eEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCc
Confidence 6667888899999999999999999999855311 12222211 1111 0 11 17
Q ss_pred hHHHHHHHHHHHhCCCeEEEEcccchhhhh
Q 005611 253 SARIRDLFKRAKVNKPSVIFIDEIDALATR 282 (688)
Q Consensus 253 ~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~ 282 (688)
++++|..+++|...+|.+++.||..+.++.
T Consensus 113 GQrQRi~IARALal~P~liV~DEpvSaLDv 142 (268)
T COG4608 113 GQRQRIGIARALALNPKLIVADEPVSALDV 142 (268)
T ss_pred hhhhhHHHHHHHhhCCcEEEecCchhhcch
Confidence 899999999999999999999999987654
No 315
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.12 E-value=3.6e-06 Score=82.35 Aligned_cols=76 Identities=22% Similarity=0.206 Sum_probs=53.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCC--EEEeeCch---hHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchh
Q 005611 205 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--FYQMAGSE---FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDAL 279 (688)
Q Consensus 205 ~~~~~gvLL~GppGtGKT~La~alA~~~~~~--~~~v~~~~---~~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l 279 (688)
++++..+.|.||+|+|||||++.+++..... -+.++... ......-.+++++|..+++|...+|.++++||..+-
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~ 101 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAY 101 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence 4677789999999999999999999864211 11111110 000000235678899999999999999999999874
Q ss_pred h
Q 005611 280 A 280 (688)
Q Consensus 280 ~ 280 (688)
.
T Consensus 102 L 102 (177)
T cd03222 102 L 102 (177)
T ss_pred C
Confidence 4
No 316
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.10 E-value=6.9e-06 Score=82.54 Aligned_cols=51 Identities=22% Similarity=0.367 Sum_probs=36.5
Q ss_pred CCCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHH
Q 005611 169 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 230 (688)
Q Consensus 169 ~~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~ 230 (688)
.+-+.|++|.-.-.-+..|.++ ++.+.++....|+||.|+|||||.+.++.
T Consensus 29 ~~li~l~~v~v~r~gk~iL~~i-----------sW~V~~ge~W~I~G~NGsGKTTLL~ll~~ 79 (257)
T COG1119 29 EPLIELKNVSVRRNGKKILGDL-----------SWQVNPGEHWAIVGPNGAGKTTLLSLLTG 79 (257)
T ss_pred cceEEecceEEEECCEeecccc-----------ceeecCCCcEEEECCCCCCHHHHHHHHhc
Confidence 3457788873322222233333 55678889999999999999999999987
No 317
>PF05729 NACHT: NACHT domain
Probab=98.10 E-value=3e-05 Score=73.97 Aligned_cols=142 Identities=20% Similarity=0.273 Sum_probs=73.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC--------CC-EEEeeCchhHHH---------Hhh---hhhHHHHH-HHHHHHhCC
Q 005611 210 GVLLEGPPGCGKTLVAKAIAGEAG--------VP-FYQMAGSEFVEV---------LVG---VGSARIRD-LFKRAKVNK 267 (688)
Q Consensus 210 gvLL~GppGtGKT~La~alA~~~~--------~~-~~~v~~~~~~~~---------~~g---~~~~~~r~-~f~~A~~~~ 267 (688)
-++|+|+||+|||++++.++.... .+ .+...+.+.... ... ........ ....+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 478999999999999999987551 11 223333222211 111 11111111 122334456
Q ss_pred CeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCcccee
Q 005611 268 PSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRK 347 (688)
Q Consensus 268 p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~ 347 (688)
+.+++||.+|.+...... .........+..++.. ....+-.++|.+.+.....+...+.. ...
T Consensus 82 ~~llilDglDE~~~~~~~-----------~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~~~~~~~~~~~~----~~~ 144 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS-----------QERQRLLDLLSQLLPQ--ALPPGVKLIITSRPRAFPDLRRRLKQ----AQI 144 (166)
T ss_pred ceEEEEechHhcccchhh-----------hHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCChHHHHHHhcCC----CcE
Confidence 779999999998754321 0011122223333332 01222233333222222222222332 157
Q ss_pred eeccCCChhhHHHHHHHHhcc
Q 005611 348 IRIRAPNAKGRTEILKIHASK 368 (688)
Q Consensus 348 I~i~~Pd~~eR~~Il~~~l~~ 368 (688)
+++++.+.+++.++++.+++.
T Consensus 145 ~~l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 145 LELEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred EEECCCCHHHHHHHHHHHhhc
Confidence 889999999999999988753
No 318
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.08 E-value=3.8e-05 Score=96.10 Aligned_cols=176 Identities=20% Similarity=0.274 Sum_probs=98.0
Q ss_pred CCcccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCE---EEeeC-----
Q 005611 170 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPF---YQMAG----- 241 (688)
Q Consensus 170 ~~v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~---~~v~~----- 241 (688)
+...+++++|.++.++++...+. ++....+.+.|+||+|+||||||+++++....+| +.++.
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~----------l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~ 248 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLH----------LESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHc----------cccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc
Confidence 44568899999999888877653 2233456799999999999999999988764332 11110
Q ss_pred -ch---------------hHHHHhhh----hhHHH--HHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhh
Q 005611 242 -SE---------------FVEVLVGV----GSARI--RDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAAT 299 (688)
Q Consensus 242 -~~---------------~~~~~~g~----~~~~~--r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~ 299 (688)
.. +....... ..-.. ...+++.....+.+|+|||++..
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~-------------------- 308 (1153)
T PLN03210 249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ-------------------- 308 (1153)
T ss_pred chhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH--------------------
Confidence 00 00000000 00000 01122223456779999998652
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccC---
Q 005611 300 QERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD--- 376 (688)
Q Consensus 300 ~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~d--- 376 (688)
..+..+....+.+. .+..||.||.+... .+....++.++++.|+.++..+++..++.+....+ .+
T Consensus 309 ----~~l~~L~~~~~~~~--~GsrIIiTTrd~~v-----l~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~-~~~~~ 376 (1153)
T PLN03210 309 ----DVLDALAGQTQWFG--SGSRIIVITKDKHF-----LRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPP-DGFME 376 (1153)
T ss_pred ----HHHHHHHhhCccCC--CCcEEEEEeCcHHH-----HHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCc-HHHHH
Confidence 11223322222222 23334446664333 22224577899999999999999998875433222 12
Q ss_pred -HHHHHhhCCCC
Q 005611 377 -LSSYAKNLPGW 387 (688)
Q Consensus 377 -l~~la~~t~G~ 387 (688)
..++++.+.|.
T Consensus 377 l~~~iv~~c~GL 388 (1153)
T PLN03210 377 LASEVALRAGNL 388 (1153)
T ss_pred HHHHHHHHhCCC
Confidence 23455556664
No 319
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.08 E-value=9.6e-06 Score=84.87 Aligned_cols=139 Identities=24% Similarity=0.325 Sum_probs=75.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCC---EEEeeCchhHHHHhhhhhHHHHHHHHHH-----------HhCCCeEEE
Q 005611 207 PPHGVLLEGPPGCGKTLVAKAIAGEAGVP---FYQMAGSEFVEVLVGVGSARIRDLFKRA-----------KVNKPSVIF 272 (688)
Q Consensus 207 ~~~gvLL~GppGtGKT~La~alA~~~~~~---~~~v~~~~~~~~~~g~~~~~~r~~f~~A-----------~~~~p~IL~ 272 (688)
..+.+||+||+|||||++++..-+...-. ...++++.... ...++..++.. .....+|+|
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt------s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~f 105 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT------SNQLQKIIESKLEKRRGRVYGPPGGKKLVLF 105 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH------HHHHHHCCCTTECECTTEEEEEESSSEEEEE
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC------HHHHHHHHhhcEEcCCCCCCCCCCCcEEEEE
Confidence 34589999999999999999877765432 22344443221 11222222111 112345999
Q ss_pred EcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCC--------CCcEEEEEecCCCC---cCCccccCC
Q 005611 273 IDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT--------GKGVIFLAATNRRD---LLDPALLRP 341 (688)
Q Consensus 273 LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~--------~~~viVIaaTN~~~---~Ld~aL~r~ 341 (688)
|||+..-....- ......+.+.+++..- ++.. -.++.++||+|... .+++.++|
T Consensus 106 iDDlN~p~~d~y-------------gtq~~iElLRQ~i~~~-g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r- 170 (272)
T PF12775_consen 106 IDDLNMPQPDKY-------------GTQPPIELLRQLIDYG-GFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR- 170 (272)
T ss_dssp EETTT-S---TT-------------S--HHHHHHHHHHHCS-EEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT-
T ss_pred ecccCCCCCCCC-------------CCcCHHHHHHHHHHhc-CcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh-
Confidence 999986443321 1111233444544431 2211 13477889988533 36777776
Q ss_pred CccceeeeccCCChhhHHHHHHHHhcc
Q 005611 342 GRFDRKIRIRAPNAKGRTEILKIHASK 368 (688)
Q Consensus 342 gRf~~~I~i~~Pd~~eR~~Il~~~l~~ 368 (688)
.| .++.++.|+.+....|+...+..
T Consensus 171 -~f-~i~~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 171 -HF-NILNIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp -TE-EEEE----TCCHHHHHHHHHHHH
T ss_pred -he-EEEEecCCChHHHHHHHHHHHhh
Confidence 44 48899999999999988776653
No 320
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.08 E-value=1.2e-05 Score=87.40 Aligned_cols=231 Identities=22% Similarity=0.232 Sum_probs=131.9
Q ss_pred cccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEee-CchhHHHHhhhhhH
Q 005611 176 DVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA-GSEFVEVLVGVGSA 254 (688)
Q Consensus 176 dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~-~~~~~~~~~g~~~~ 254 (688)
+|+|.+++|+.|.-++-.-.+...-+.+.++..-+|+|.|.||+.||.|.+++.+-+-...+... ++.. +|.+..
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSG----VGLTAA 418 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSG----VGLTAA 418 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCc----cccchh
Confidence 47999999999865544322222223455666678999999999999999999998766555442 2222 222222
Q ss_pred HHHHHHHH-------H-HhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHH-HHHHHHHHHhcCC--CCCCcEE
Q 005611 255 RIRDLFKR-------A-KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERE-TTLNQLLIELDGF--DTGKGVI 323 (688)
Q Consensus 255 ~~r~~f~~-------A-~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~LL~~ld~~--~~~~~vi 323 (688)
-+++-..- | -...-.|-.|||+|.+....... .++..+ +++. +- -.|+ .-+.++-
T Consensus 419 VmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtA-----------IHEVMEQQTIS-Ia--KAGI~TtLNAR~s 484 (721)
T KOG0482|consen 419 VMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTA-----------IHEVMEQQTIS-IA--KAGINTTLNARTS 484 (721)
T ss_pred hhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhHH-----------HHHHHHhhhhh-hh--hhccccchhhhHH
Confidence 22221100 0 01223488999999976432211 111111 1111 00 0111 1134567
Q ss_pred EEEecCCCC-------------cCCccccCCCccceeeec-cCCChhhHHHHHHHH----hccCcCC---CccCH-----
Q 005611 324 FLAATNRRD-------------LLDPALLRPGRFDRKIRI-RAPNAKGRTEILKIH----ASKVKMS---DSVDL----- 377 (688)
Q Consensus 324 VIaaTN~~~-------------~Ld~aL~r~gRf~~~I~i-~~Pd~~eR~~Il~~~----l~~~~~~---~~~dl----- 377 (688)
|+||.|... .||++|++ |||...-+ ..||.+.-..+-++. .....-+ +.++.
T Consensus 485 ILaAANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~ 562 (721)
T KOG0482|consen 485 ILAAANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRR 562 (721)
T ss_pred hhhhcCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHH
Confidence 888888633 38999999 99975444 567665544443332 1111101 00111
Q ss_pred ---------------------------HHHHhh--CC-CCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHhhccC
Q 005611 378 ---------------------------SSYAKN--LP-GWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTVG 426 (688)
Q Consensus 378 ---------------------------~~la~~--t~-G~s~~dL~~lv~~A~~~A~~~~~~~I~~~di~~Al~~~~~g 426 (688)
.+-++. .. -.|++.|-.+++-+...|..|-.+.+..+|+++|+.-....
T Consensus 563 yI~~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme~s 641 (721)
T KOG0482|consen 563 YISLAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLMEMS 641 (721)
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHhh
Confidence 000110 01 23788899999999999988888999999999998766554
No 321
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.08 E-value=4e-06 Score=89.28 Aligned_cols=31 Identities=35% Similarity=0.416 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHhCCCeEEEEcccchhhhh
Q 005611 252 GSARIRDLFKRAKVNKPSVIFIDEIDALATR 282 (688)
Q Consensus 252 ~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~ 282 (688)
|++++|-++.+|...+|+++++||--+.++.
T Consensus 136 GGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa 166 (338)
T COG3839 136 GGQRQRVALARALVRKPKVFLLDEPLSNLDA 166 (338)
T ss_pred hhhHHHHHHHHHHhcCCCEEEecCchhHhhH
Confidence 7889999999999999999999998775543
No 322
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.06 E-value=1.3e-05 Score=77.89 Aligned_cols=110 Identities=23% Similarity=0.338 Sum_probs=70.0
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC--EEEeeCch---------------------hHHHHh----hhhhH
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--FYQMAGSE---------------------FVEVLV----GVGSA 254 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~--~~~v~~~~---------------------~~~~~~----g~~~~ 254 (688)
++.++++..+.|.||+|+|||||.+.+++..... -+.+++.. +....+ =.+++
T Consensus 22 ~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~ 101 (171)
T cd03228 22 SLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQ 101 (171)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHH
Confidence 5567788889999999999999999999864210 01111111 000000 12467
Q ss_pred HHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcC
Q 005611 255 RIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLL 334 (688)
Q Consensus 255 ~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~L 334 (688)
++|..+.+|...+|.++++||..+-.+ ......+.+++..+. .. ..+|.+|+.++.+
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gLD------------------~~~~~~l~~~l~~~~---~~--~tii~~sh~~~~~ 158 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSALD------------------PETEALILEALRALA---KG--KTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCC------------------HHHHHHHHHHHHHhc---CC--CEEEEEecCHHHH
Confidence 788889999999999999999887443 233444455555542 22 3455567766554
No 323
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.06 E-value=1.5e-05 Score=77.15 Aligned_cols=79 Identities=29% Similarity=0.464 Sum_probs=55.8
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-----------CEEEeeC-c-----hhHHHHh------hhhhHHHHH
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV-----------PFYQMAG-S-----EFVEVLV------GVGSARIRD 258 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~-----------~~~~v~~-~-----~~~~~~~------g~~~~~~r~ 258 (688)
++.+.++..+.|.||+|+|||||++.+++.... ...++.- . ...+... =.+++++|.
T Consensus 21 ~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv 100 (166)
T cd03223 21 SFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRL 100 (166)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHH
Confidence 556778888999999999999999999986421 0111110 0 1111111 125678899
Q ss_pred HHHHHHhCCCeEEEEcccchhh
Q 005611 259 LFKRAKVNKPSVIFIDEIDALA 280 (688)
Q Consensus 259 ~f~~A~~~~p~IL~LDEiD~l~ 280 (688)
.+++|...+|.++++||..+-.
T Consensus 101 ~laral~~~p~~lllDEPt~~L 122 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSAL 122 (166)
T ss_pred HHHHHHHcCCCEEEEECCcccc
Confidence 9999999999999999998744
No 324
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.05 E-value=2.3e-05 Score=76.82 Aligned_cols=79 Identities=27% Similarity=0.426 Sum_probs=55.4
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhcCC--CEEEeeCch--------hHHH--H-------hh------------
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV--PFYQMAGSE--------FVEV--L-------VG------------ 250 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~--~~~~v~~~~--------~~~~--~-------~g------------ 250 (688)
++.+.++..+.|.||+|+|||||++.+++.... --+.++..+ +... + .|
T Consensus 19 ~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 19 SLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 555778888999999999999999999986521 112222111 0000 0 01
Q ss_pred hhhHHHHHHHHHHHhCCCeEEEEcccchhh
Q 005611 251 VGSARIRDLFKRAKVNKPSVIFIDEIDALA 280 (688)
Q Consensus 251 ~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~ 280 (688)
.+++++|..+.+|...+|.++++||..+-.
T Consensus 99 S~G~~qrl~laral~~~p~llllDEP~~~L 128 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEPTSHL 128 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 156788899999999999999999998743
No 325
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.05 E-value=0.00012 Score=76.99 Aligned_cols=160 Identities=19% Similarity=0.244 Sum_probs=86.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHh--cCCCE---EEeeCc------hhHHHHh---hh---------hhHHHHHHHHH
Q 005611 206 KPPHGVLLEGPPGCGKTLVAKAIAGE--AGVPF---YQMAGS------EFVEVLV---GV---------GSARIRDLFKR 262 (688)
Q Consensus 206 ~~~~gvLL~GppGtGKT~La~alA~~--~~~~~---~~v~~~------~~~~~~~---g~---------~~~~~r~~f~~ 262 (688)
...+-+.|+|++|+|||+||+.+++. ....| +.++.+ ++..... +. ........+.+
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 96 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRE 96 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 34557999999999999999999977 32221 222221 1222211 11 12234445555
Q ss_pred HHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCC
Q 005611 263 AKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPG 342 (688)
Q Consensus 263 A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~g 342 (688)
.....+++|+||+++... .+..+...+... ..+.-||.||...... ....
T Consensus 97 ~L~~~~~LlVlDdv~~~~------------------------~~~~l~~~~~~~--~~~~kilvTTR~~~v~-~~~~--- 146 (287)
T PF00931_consen 97 LLKDKRCLLVLDDVWDEE------------------------DLEELREPLPSF--SSGSKILVTTRDRSVA-GSLG--- 146 (287)
T ss_dssp HHCCTSEEEEEEEE-SHH------------------------HH-------HCH--HSS-EEEEEESCGGGG-TTHH---
T ss_pred hhccccceeeeeeecccc------------------------cccccccccccc--cccccccccccccccc-cccc---
Confidence 566679999999987632 112222222211 1234555566653321 1111
Q ss_pred ccceeeeccCCChhhHHHHHHHHhccCcC---C-CccCHHHHHhhCCCCCHHHHHHHH
Q 005611 343 RFDRKIRIRAPNAKGRTEILKIHASKVKM---S-DSVDLSSYAKNLPGWTGARLAQLV 396 (688)
Q Consensus 343 Rf~~~I~i~~Pd~~eR~~Il~~~l~~~~~---~-~~~dl~~la~~t~G~s~~dL~~lv 396 (688)
.-...++++..+.++-.++|+........ . .+....++++.+.| .|-.|.-+.
T Consensus 147 ~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~a 203 (287)
T PF00931_consen 147 GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLIA 203 (287)
T ss_dssp SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 11568899999999999999988765441 1 12235788888877 566666553
No 326
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.05 E-value=8.9e-06 Score=79.25 Aligned_cols=80 Identities=24% Similarity=0.272 Sum_probs=55.3
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhcCC--CEEEeeC--------------------chh------HHHHhhhhh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV--PFYQMAG--------------------SEF------VEVLVGVGS 253 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~--~~~~v~~--------------------~~~------~~~~~g~~~ 253 (688)
++.+.++..+.|.||+|+|||||++.+++.... --+.+++ ..+ .+...-.++
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 20 SLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 556677888999999999999999999985411 0011110 000 011111356
Q ss_pred HHHHHHHHHHHhCCCeEEEEcccchhhh
Q 005611 254 ARIRDLFKRAKVNKPSVIFIDEIDALAT 281 (688)
Q Consensus 254 ~~~r~~f~~A~~~~p~IL~LDEiD~l~~ 281 (688)
+++|..+++|...+|.++++||..+-.+
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD 127 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLD 127 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCC
Confidence 7888999999999999999999987543
No 327
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.04 E-value=6.4e-05 Score=84.69 Aligned_cols=132 Identities=25% Similarity=0.349 Sum_probs=69.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHHHHhhhhhH-----HHHHHHHH--H-HhCCCeEEEEcccc
Q 005611 206 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSA-----RIRDLFKR--A-KVNKPSVIFIDEID 277 (688)
Q Consensus 206 ~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~~~~g~~~~-----~~r~~f~~--A-~~~~p~IL~LDEiD 277 (688)
+..-+|||+|.||||||.+.+.+++-+..-.+. ++.. +.-+|.+.. .-+.+.-+ | -...-.|-.|||+|
T Consensus 460 R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yT-SGkG--sSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFD 536 (804)
T KOG0478|consen 460 RGDINILLVGDPGTSKSQLLQYCHRLLPRGVYT-SGKG--SSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFD 536 (804)
T ss_pred cccceEEEecCCCcCHHHHHHHHHHhCCcceee-cCCc--cchhcceeeEEecCccceeeeecCcEEEcCCceEEchhhh
Confidence 444579999999999999999999976443332 2110 000111000 00011000 0 11234478899999
Q ss_pred hhhhhhcCCccCcchhhhhhhhHHHH-HHHHHHHHHhcCC--CCCCcEEEEEecCCCC-------------cCCccccCC
Q 005611 278 ALATRRQGIFKDTTDHLYNAATQERE-TTLNQLLIELDGF--DTGKGVIFLAATNRRD-------------LLDPALLRP 341 (688)
Q Consensus 278 ~l~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~LL~~ld~~--~~~~~viVIaaTN~~~-------------~Ld~aL~r~ 341 (688)
++.+...+. .++..+ ++++- ...|. .-+.+.-|+|++|... .|+|.|++
T Consensus 537 KM~dStrSv-----------LhEvMEQQTvSI---AKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS- 601 (804)
T KOG0478|consen 537 KMSDSTRSV-----------LHEVMEQQTLSI---AKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS- 601 (804)
T ss_pred hhhHHHHHH-----------HHHHHHHhhhhH---hhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhh-
Confidence 975443211 111110 11110 01111 1134567899999532 38999999
Q ss_pred Cccceeee-ccCCChh
Q 005611 342 GRFDRKIR-IRAPNAK 356 (688)
Q Consensus 342 gRf~~~I~-i~~Pd~~ 356 (688)
|||.++- +..||..
T Consensus 602 -RFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 602 -RFDLIFLLLDKPDER 616 (804)
T ss_pred -hhcEEEEEecCcchh
Confidence 9998664 4666665
No 328
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.04 E-value=7.2e-06 Score=81.52 Aligned_cols=79 Identities=28% Similarity=0.309 Sum_probs=55.1
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhc--CCC--EEEeeC------------------c------hhHHHH-----
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA--GVP--FYQMAG------------------S------EFVEVL----- 248 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~--~~~--~~~v~~------------------~------~~~~~~----- 248 (688)
++.+.++..+.|.||+|+|||||.+.+++.. ... -+.++. . ...+..
T Consensus 29 ~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~ 108 (194)
T cd03213 29 SGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAK 108 (194)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHH
Confidence 5567788889999999999999999999875 210 000100 0 000110
Q ss_pred --hhhhhHHHHHHHHHHHhCCCeEEEEcccchhh
Q 005611 249 --VGVGSARIRDLFKRAKVNKPSVIFIDEIDALA 280 (688)
Q Consensus 249 --~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~ 280 (688)
.-.+++++|..+++|...+|.++++||..+-.
T Consensus 109 ~~~LS~G~~qrv~laral~~~p~illlDEP~~~L 142 (194)
T cd03213 109 LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGL 142 (194)
T ss_pred hccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCC
Confidence 11256778889999999999999999998744
No 329
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.03 E-value=8.3e-06 Score=81.87 Aligned_cols=124 Identities=23% Similarity=0.252 Sum_probs=75.2
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhcC----------CC---------EEEee--------Cc--hhHH---HHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG----------VP---------FYQMA--------GS--EFVE---VLV 249 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~~----------~~---------~~~v~--------~~--~~~~---~~~ 249 (688)
++.++++..+.|.||+|+|||||++.+++... .+ ..++. .+ +... .+.
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~ 101 (207)
T PRK13539 22 SFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFL 101 (207)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhc
Confidence 55677888899999999999999999998431 00 00000 00 0000 000
Q ss_pred h--------------------------hhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHH
Q 005611 250 G--------------------------VGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERE 303 (688)
Q Consensus 250 g--------------------------~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~ 303 (688)
+ .+++++|..+++|...+|.++++||..+-.+ ....
T Consensus 102 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD------------------~~~~ 163 (207)
T PRK13539 102 GGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALD------------------AAAV 163 (207)
T ss_pred CCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC------------------HHHH
Confidence 0 0466778888999999999999999987433 3333
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccceeeeccCCCh
Q 005611 304 TTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNA 355 (688)
Q Consensus 304 ~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~I~i~~Pd~ 355 (688)
..+.+++.++. .. +..+|.+|++.+.++. ++++.+..|..
T Consensus 164 ~~l~~~l~~~~---~~-~~tiii~sH~~~~~~~--------~~~~~~~~~~~ 203 (207)
T PRK13539 164 ALFAELIRAHL---AQ-GGIVIAATHIPLGLPG--------ARELDLGPFAA 203 (207)
T ss_pred HHHHHHHHHHH---HC-CCEEEEEeCCchhhcc--------CcEEeecCccC
Confidence 44455555442 12 3345556777666654 34555655544
No 330
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.03 E-value=2.5e-05 Score=76.38 Aligned_cols=79 Identities=19% Similarity=0.269 Sum_probs=55.6
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhcCC--CEEEeeCchh--------------------H-----HHHh--hhh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV--PFYQMAGSEF--------------------V-----EVLV--GVG 252 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~--~~~~v~~~~~--------------------~-----~~~~--g~~ 252 (688)
++.++++..+.|.||+|+|||||++.+++.... --+.++..+. . +... =.+
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 22 SLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 566788888999999999999999999985421 0111221110 0 0000 014
Q ss_pred hHHHHHHHHHHHhCCCeEEEEcccchhh
Q 005611 253 SARIRDLFKRAKVNKPSVIFIDEIDALA 280 (688)
Q Consensus 253 ~~~~r~~f~~A~~~~p~IL~LDEiD~l~ 280 (688)
++++|..+++|...+|.++++||..+-.
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~L 129 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGL 129 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 6788899999999999999999998744
No 331
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.03 E-value=1.1e-05 Score=78.71 Aligned_cols=79 Identities=24% Similarity=0.397 Sum_probs=54.8
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC--EEEeeCch---------------------hHHHHh----hhhhH
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--FYQMAGSE---------------------FVEVLV----GVGSA 254 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~--~~~v~~~~---------------------~~~~~~----g~~~~ 254 (688)
++.+.++..+.|.||+|+|||||++.+++..... -+.++..+ +....+ =.+++
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~ 101 (173)
T cd03246 22 SFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQ 101 (173)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHH
Confidence 4556777889999999999999999999854210 11111110 000000 13567
Q ss_pred HHHHHHHHHHhCCCeEEEEcccchhh
Q 005611 255 RIRDLFKRAKVNKPSVIFIDEIDALA 280 (688)
Q Consensus 255 ~~r~~f~~A~~~~p~IL~LDEiD~l~ 280 (688)
++|..+++|...+|.++++||..+-.
T Consensus 102 ~qrv~la~al~~~p~~lllDEPt~~L 127 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDEPNSHL 127 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccc
Confidence 88999999999999999999998744
No 332
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=7.6e-05 Score=78.44 Aligned_cols=154 Identities=17% Similarity=0.226 Sum_probs=93.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCEEE--ee---C-----------chhHHHH-hh--hhhHHHHHHHHHHHh-
Q 005611 206 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ--MA---G-----------SEFVEVL-VG--VGSARIRDLFKRAKV- 265 (688)
Q Consensus 206 ~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~--v~---~-----------~~~~~~~-~g--~~~~~~r~~f~~A~~- 265 (688)
+.+..+||+|| +||+++|+.+|+.+-+.--. .. | +|+..-. .| .+-..+|.+...+..
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 56778999996 68999999999866432100 00 1 1111000 01 123456766655432
Q ss_pred ---CCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCC
Q 005611 266 ---NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPG 342 (688)
Q Consensus 266 ---~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~g 342 (688)
....|++||++|.+... ..|.||+.++ +++.++++|..|+.++.+.|.+++
T Consensus 100 p~~~~~kV~II~~ad~m~~~----------------------AaNaLLKtLE--EPp~~t~~iL~t~~~~~lLpTI~S-- 153 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMHVN----------------------AANSLLKVIE--EPQSEIYIFLLTNDENKVLPTIKS-- 153 (290)
T ss_pred cccCCcEEEEeehhhhcCHH----------------------HHHHHHHHhc--CCCCCeEEEEEECChhhCchHHHH--
Confidence 23469999999987532 3488999988 455667888888889999999998
Q ss_pred ccceeeeccCCChhhHHHHHHHHhccCcCCCccCHHHHHhhCCCCCHHHHHHHH
Q 005611 343 RFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLV 396 (688)
Q Consensus 343 Rf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~G~s~~dL~~lv 396 (688)
|. ..+.|++ +.++..+++. +.+... +...++....| ++.....+.
T Consensus 154 Rc-q~i~f~~-~~~~~~~~L~----~~g~~~--~~a~~la~~~~-s~~~A~~l~ 198 (290)
T PRK07276 154 RT-QIFHFPK-NEAYLIQLLE----QKGLLK--TQAELLAKLAQ-STSEAEKLA 198 (290)
T ss_pred cc-eeeeCCC-cHHHHHHHHH----HcCCCh--HHHHHHHHHCC-CHHHHHHHh
Confidence 75 5777765 5555455553 223222 22334444445 555555554
No 333
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.02 E-value=3.7e-05 Score=77.14 Aligned_cols=79 Identities=23% Similarity=0.305 Sum_probs=51.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchh-HHHHhhh----------------------hhHHHH
Q 005611 204 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEF-VEVLVGV----------------------GSARIR 257 (688)
Q Consensus 204 g~~~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~-~~~~~g~----------------------~~~~~r 257 (688)
|+..+.-++++||||+|||+++..++... +.+.++++..++ .+.+... ....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 67777889999999999999999887643 556777776542 1111110 011122
Q ss_pred HHHHHHHhCCCeEEEEcccchhhhh
Q 005611 258 DLFKRAKVNKPSVIFIDEIDALATR 282 (688)
Q Consensus 258 ~~f~~A~~~~p~IL~LDEiD~l~~~ 282 (688)
.+...+....|++|+||-+.++...
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~~ 112 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYRL 112 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhHH
Confidence 2333344457899999999998643
No 334
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.02 E-value=1.6e-05 Score=79.52 Aligned_cols=30 Identities=33% Similarity=0.547 Sum_probs=26.8
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.++++..+.|.||+|+|||||++.+++.
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 21 SFTLNAGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred eEEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 566778888999999999999999999984
No 335
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=1.6e-05 Score=83.36 Aligned_cols=118 Identities=16% Similarity=0.167 Sum_probs=79.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCC----------------EEEeeCchhHHHHhhhhhHHHHHHHHHHHh----
Q 005611 206 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVP----------------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV---- 265 (688)
Q Consensus 206 ~~~~gvLL~GppGtGKT~La~alA~~~~~~----------------~~~v~~~~~~~~~~g~~~~~~r~~f~~A~~---- 265 (688)
+.++..||+||+|+||+.+|.++|+.+-+. ++.+. ++.... .-+-..+|.+.+.+..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~-p~~~~~--~I~idqiR~l~~~~~~~p~e 93 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFS-PQGKGR--LHSIETPRAIKKQIWIHPYE 93 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEe-cCCCCC--cCcHHHHHHHHHHHhhCccC
Confidence 567789999999999999999999976442 11111 110000 0123445665555432
Q ss_pred CCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCccc
Q 005611 266 NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFD 345 (688)
Q Consensus 266 ~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~ 345 (688)
....|++||++|.+... ..|.||+.++ +++.++++|..|+.++.+.|.+++ |+
T Consensus 94 ~~~kv~ii~~ad~mt~~----------------------AaNaLLK~LE--EPp~~~~fiL~~~~~~~ll~TI~S--Rc- 146 (290)
T PRK05917 94 SPYKIYIIHEADRMTLD----------------------AISAFLKVLE--DPPQHGVIILTSAKPQRLPPTIRS--RS- 146 (290)
T ss_pred CCceEEEEechhhcCHH----------------------HHHHHHHHhh--cCCCCeEEEEEeCChhhCcHHHHh--cc-
Confidence 23469999999997533 3378888888 456677888888889999999998 75
Q ss_pred eeeeccCC
Q 005611 346 RKIRIRAP 353 (688)
Q Consensus 346 ~~I~i~~P 353 (688)
..+.|+++
T Consensus 147 q~~~~~~~ 154 (290)
T PRK05917 147 LSIHIPME 154 (290)
T ss_pred eEEEccch
Confidence 35666654
No 336
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.02 E-value=6.1e-06 Score=83.39 Aligned_cols=30 Identities=27% Similarity=0.485 Sum_probs=26.6
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++++++.
T Consensus 24 s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 24 SLSIEKGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEcCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 556778888999999999999999999984
No 337
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.01 E-value=2.9e-06 Score=80.45 Aligned_cols=29 Identities=31% Similarity=0.579 Sum_probs=26.0
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHH
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAG 230 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~ 230 (688)
++.++++..+.|+||+|+|||||.-.+|+
T Consensus 30 ~L~v~~Ge~vaiVG~SGSGKSTLl~vlAG 58 (228)
T COG4181 30 ELVVKRGETVAIVGPSGSGKSTLLAVLAG 58 (228)
T ss_pred eEEecCCceEEEEcCCCCcHHhHHHHHhc
Confidence 45577888999999999999999999997
No 338
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.00 E-value=3.5e-05 Score=76.41 Aligned_cols=79 Identities=25% Similarity=0.200 Sum_probs=53.7
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhcC-----C---------------CEEEee-Cchh------HHHH------
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG-----V---------------PFYQMA-GSEF------VEVL------ 248 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~~-----~---------------~~~~v~-~~~~------~~~~------ 248 (688)
++.++++..+.|.||+|+|||||++.+++... - .+..+. ...+ .+..
T Consensus 27 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 106 (192)
T cd03232 27 SGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALL 106 (192)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHH
Confidence 55567888899999999999999999997321 0 010110 0000 0110
Q ss_pred -hhhhhHHHHHHHHHHHhCCCeEEEEcccchhh
Q 005611 249 -VGVGSARIRDLFKRAKVNKPSVIFIDEIDALA 280 (688)
Q Consensus 249 -~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~ 280 (688)
.=.+++++|..+++|...+|.++++||..+-.
T Consensus 107 ~~LSgGe~qrv~la~al~~~p~vlllDEP~~~L 139 (192)
T cd03232 107 RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGL 139 (192)
T ss_pred hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCC
Confidence 01246778889999999999999999998744
No 339
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.00 E-value=1.3e-06 Score=87.85 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHhCCCeEEEEcccchhh
Q 005611 252 GSARIRDLFKRAKVNKPSVIFIDEIDALA 280 (688)
Q Consensus 252 ~~~~~r~~f~~A~~~~p~IL~LDEiD~l~ 280 (688)
|++.+|.-..+|....|.|+++||--...
T Consensus 138 GGQQQRVGv~RALAadP~ilLMDEPFgAL 166 (309)
T COG1125 138 GGQQQRVGVARALAADPPILLMDEPFGAL 166 (309)
T ss_pred cchhhHHHHHHHHhcCCCeEeecCCcccc
Confidence 77888999999999999999999976543
No 340
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.00 E-value=2.7e-06 Score=92.52 Aligned_cols=30 Identities=33% Similarity=0.393 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHhCCCeEEEEcccchhhh
Q 005611 252 GSARIRDLFKRAKVNKPSVIFIDEIDALAT 281 (688)
Q Consensus 252 ~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~ 281 (688)
+++++|..+++|...+|.+|++||..+-.+
T Consensus 137 gGq~QRvalARAL~~~P~llLLDEP~s~LD 166 (356)
T PRK11650 137 GGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166 (356)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 678899999999999999999999987543
No 341
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.99 E-value=2.3e-05 Score=78.43 Aligned_cols=79 Identities=29% Similarity=0.294 Sum_probs=54.3
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhcC-----CCEEEeeCch--------------------h------HHHH--
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG-----VPFYQMAGSE--------------------F------VEVL-- 248 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~~-----~~~~~v~~~~--------------------~------~~~~-- 248 (688)
++.+.++..+.|.||+|+|||||++.+++... .--+.+++.+ + .+..
T Consensus 27 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~ 106 (202)
T cd03233 27 SGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDF 106 (202)
T ss_pred EEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhh
Confidence 55677888899999999999999999998643 0001111000 0 0000
Q ss_pred ---------hh--hhhHHHHHHHHHHHhCCCeEEEEcccchhh
Q 005611 249 ---------VG--VGSARIRDLFKRAKVNKPSVIFIDEIDALA 280 (688)
Q Consensus 249 ---------~g--~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~ 280 (688)
.. .+++++|..+++|...+|.++++||..+-.
T Consensus 107 ~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~L 149 (202)
T cd03233 107 ALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGL 149 (202)
T ss_pred hhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccC
Confidence 00 156778889999999999999999987744
No 342
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.99 E-value=7.5e-06 Score=91.62 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHhCCCeEEEEcccchhhhh
Q 005611 252 GSARIRDLFKRAKVNKPSVIFIDEIDALATR 282 (688)
Q Consensus 252 ~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~ 282 (688)
+++++|..+++|....|.+|++||..+..+.
T Consensus 432 GGQrQRvaIARALa~~P~lli~DEp~SaLDv 462 (539)
T COG1123 432 GGQRQRVAIARALALEPKLLILDEPVSALDV 462 (539)
T ss_pred cchhHHHHHHHHHhcCCCEEEecCCccccCH
Confidence 7899999999999999999999999886543
No 343
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.98 E-value=6.5e-05 Score=77.17 Aligned_cols=121 Identities=12% Similarity=0.071 Sum_probs=79.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHH---H-----------H---hhhhhHHHHHHHHHHHh---
Q 005611 206 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE---V-----------L---VGVGSARIRDLFKRAKV--- 265 (688)
Q Consensus 206 ~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~---~-----------~---~g~~~~~~r~~f~~A~~--- 265 (688)
.+|..+|++||+|+||..+|.++|+..-+.--.-.|..... . + ..-+...+|++.+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 56778999999999999999999986533210000110000 0 0 01133445555444321
Q ss_pred --CCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCc
Q 005611 266 --NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGR 343 (688)
Q Consensus 266 --~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gR 343 (688)
....|++||++|.+.. ...|.||..++ +++.++++|..|+.++.+.|.+++ |
T Consensus 85 e~~~~KV~II~~ae~m~~----------------------~AaNaLLK~LE--EPp~~t~fiLit~~~~~lLpTI~S--R 138 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNK----------------------QSANSLLKLIE--EPPKNTYGIFTTRNENNILNTILS--R 138 (261)
T ss_pred hcCCCEEEEeccHhhhCH----------------------HHHHHHHHhhc--CCCCCeEEEEEECChHhCchHhhh--h
Confidence 2357999999998653 23488999888 466778888889999999999999 7
Q ss_pred cceeeeccCC
Q 005611 344 FDRKIRIRAP 353 (688)
Q Consensus 344 f~~~I~i~~P 353 (688)
.. .+.++.+
T Consensus 139 Cq-~~~~~~~ 147 (261)
T PRK05818 139 CV-QYVVLSK 147 (261)
T ss_pred ee-eeecCCh
Confidence 54 4556665
No 344
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.97 E-value=4.3e-05 Score=75.91 Aligned_cols=30 Identities=30% Similarity=0.593 Sum_probs=26.7
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.++++..+.|.||+|+|||||++.+++.
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 20 SITFLPSAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 455778888999999999999999999985
No 345
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.97 E-value=9.7e-06 Score=81.64 Aligned_cols=30 Identities=40% Similarity=0.723 Sum_probs=26.5
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++.+++.
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 20 SLTVEPGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 556778888999999999999999999984
No 346
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.96 E-value=3.7e-06 Score=90.87 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=26.2
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHH
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAG 230 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~ 230 (688)
++.+.++..+.|.||+|+|||||++.+++
T Consensus 25 sl~i~~Gei~gIiG~sGaGKSTLlr~I~g 53 (343)
T TIGR02314 25 SLHVPAGQIYGVIGASGAGKSTLIRCVNL 53 (343)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 56677888899999999999999999998
No 347
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.96 E-value=1.5e-05 Score=80.29 Aligned_cols=31 Identities=42% Similarity=0.659 Sum_probs=27.1
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 232 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~ 232 (688)
++.++++..+.|.||+|+|||||++.+++..
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 20 NLDIADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5567788889999999999999999999843
No 348
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.95 E-value=6.9e-05 Score=73.32 Aligned_cols=79 Identities=27% Similarity=0.376 Sum_probs=54.4
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC--EEEeeCc-----------------------hhH------HHHh-
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--FYQMAGS-----------------------EFV------EVLV- 249 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~--~~~v~~~-----------------------~~~------~~~~- 249 (688)
++.+.++..+.|.||+|+|||||++++++..... -+.++.. .+. +...
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~ 99 (178)
T cd03229 20 SLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIAL 99 (178)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheee
Confidence 4556778889999999999999999999754210 0111110 000 0000
Q ss_pred -hhhhHHHHHHHHHHHhCCCeEEEEcccchhh
Q 005611 250 -GVGSARIRDLFKRAKVNKPSVIFIDEIDALA 280 (688)
Q Consensus 250 -g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~ 280 (688)
-.+++++|..+.+|...+|.++++||..+-.
T Consensus 100 ~lS~G~~qr~~la~al~~~p~llilDEP~~~L 131 (178)
T cd03229 100 GLSGGQQQRVALARALAMDPDVLLLDEPTSAL 131 (178)
T ss_pred cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccC
Confidence 1246788999999999999999999988744
No 349
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.95 E-value=4.7e-05 Score=76.47 Aligned_cols=30 Identities=30% Similarity=0.405 Sum_probs=26.6
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++.+++.
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 20 SFSVEKGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 556778888999999999999999999984
No 350
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.95 E-value=7.9e-06 Score=82.76 Aligned_cols=30 Identities=37% Similarity=0.671 Sum_probs=26.4
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.++++..+.|.||+|+|||||++++++.
T Consensus 24 s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 24 SLSVEEGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 455677888999999999999999999984
No 351
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.95 E-value=5e-06 Score=79.70 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHhCCCeEEEEcccchhhh
Q 005611 252 GSARIRDLFKRAKVNKPSVIFIDEIDALAT 281 (688)
Q Consensus 252 ~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~ 281 (688)
+++++|.+++++..+...|+++||--+..+
T Consensus 132 GGqRQRvALARclvR~~PilLLDEPFsALd 161 (231)
T COG3840 132 GGQRQRVALARCLVREQPILLLDEPFSALD 161 (231)
T ss_pred chHHHHHHHHHHHhccCCeEEecCchhhcC
Confidence 788999999999888777999999877543
No 352
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.95 E-value=4.1e-06 Score=91.65 Aligned_cols=30 Identities=37% Similarity=0.482 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHhCCCeEEEEcccchhhh
Q 005611 252 GSARIRDLFKRAKVNKPSVIFIDEIDALAT 281 (688)
Q Consensus 252 ~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~ 281 (688)
+++++|..+++|...+|.++++||-.+-.+
T Consensus 147 gGq~QRVaLARaL~~~P~llLLDEP~s~LD 176 (375)
T PRK09452 147 GGQQQRVAIARAVVNKPKVLLLDESLSALD 176 (375)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCC
Confidence 678899999999999999999999987543
No 353
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.94 E-value=2.1e-05 Score=77.33 Aligned_cols=79 Identities=19% Similarity=0.221 Sum_probs=54.3
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-----------------------CEEEeeCc----------hhHHHH
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV-----------------------PFYQMAGS----------EFVEVL 248 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~-----------------------~~~~v~~~----------~~~~~~ 248 (688)
++.++++..+.|.||+|+|||||++.+++.... ...++.-. ...+..
T Consensus 20 s~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l 99 (182)
T cd03215 20 SFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENI 99 (182)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHH
Confidence 555778888999999999999999999984310 01111000 011111
Q ss_pred -h---hhhhHHHHHHHHHHHhCCCeEEEEcccchhh
Q 005611 249 -V---GVGSARIRDLFKRAKVNKPSVIFIDEIDALA 280 (688)
Q Consensus 249 -~---g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~ 280 (688)
. -.+++++|..+++|...+|.++++||..+-.
T Consensus 100 ~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~L 135 (182)
T cd03215 100 ALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGV 135 (182)
T ss_pred HHHhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCC
Confidence 1 1246778888999999999999999998744
No 354
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.94 E-value=8.6e-06 Score=88.43 Aligned_cols=29 Identities=48% Similarity=0.769 Sum_probs=26.3
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHH
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAG 230 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~ 230 (688)
++.+.++..+.|.||+|||||||.+.|++
T Consensus 26 sl~i~~Ge~~~llGpsGsGKSTLLr~IaG 54 (351)
T PRK11432 26 NLTIKQGTMVTLLGPSGCGKTTVLRLVAG 54 (351)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHHC
Confidence 55677788899999999999999999998
No 355
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.93 E-value=6.4e-06 Score=84.09 Aligned_cols=31 Identities=35% Similarity=0.548 Sum_probs=26.9
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 232 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~ 232 (688)
++.+..+..++|.||+|+|||||++.+++-.
T Consensus 24 ~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl 54 (235)
T COG1122 24 SLEIEKGERVLLIGPNGSGKSTLLKLLNGLL 54 (235)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCcC
Confidence 5567778889999999999999999999843
No 356
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.93 E-value=2.4e-05 Score=78.97 Aligned_cols=30 Identities=27% Similarity=0.542 Sum_probs=26.9
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++.+++.
T Consensus 31 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 31 DFHVDAGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred eEEECCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 566788888999999999999999999984
No 357
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.92 E-value=4.6e-05 Score=76.12 Aligned_cols=79 Identities=24% Similarity=0.302 Sum_probs=54.6
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhcC-CC---EEEeeCch----------------------hH---------H
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG-VP---FYQMAGSE----------------------FV---------E 246 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~~-~~---~~~v~~~~----------------------~~---------~ 246 (688)
++.+.++..+.|.||+|+|||||++.+++... .| -+.++..+ +. .
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~ 99 (200)
T cd03217 20 NLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLR 99 (200)
T ss_pred ceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHh
Confidence 55677888999999999999999999998621 00 01111100 00 0
Q ss_pred HHh--hhhhHHHHHHHHHHHhCCCeEEEEcccchhh
Q 005611 247 VLV--GVGSARIRDLFKRAKVNKPSVIFIDEIDALA 280 (688)
Q Consensus 247 ~~~--g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~ 280 (688)
... =.+++++|..+++|...+|.++++||...-.
T Consensus 100 ~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~L 135 (200)
T cd03217 100 YVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGL 135 (200)
T ss_pred hccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 110 1156778899999999999999999988643
No 358
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.92 E-value=4e-05 Score=77.60 Aligned_cols=30 Identities=23% Similarity=0.381 Sum_probs=26.7
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++++++.
T Consensus 25 sl~i~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 25 SLSIGKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 566778888999999999999999999974
No 359
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.92 E-value=2.4e-05 Score=79.07 Aligned_cols=30 Identities=37% Similarity=0.534 Sum_probs=26.6
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++++++.
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 25 SFTVKPGEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 556777888999999999999999999984
No 360
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.92 E-value=0.00013 Score=74.55 Aligned_cols=128 Identities=20% Similarity=0.216 Sum_probs=71.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCchhHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCcc
Q 005611 209 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFK 288 (688)
Q Consensus 209 ~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~~~~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~ 288 (688)
.+-.++||+|||||..+|.+|+.+|.+++..+|++..+. +.+..+|.-+.. .-+.+.+||++.+-...
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~------~~l~ril~G~~~-~GaW~cfdefnrl~~~v----- 100 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDY------QSLSRILKGLAQ-SGAWLCFDEFNRLSEEV----- 100 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-H------HHHHHHHHHHHH-HT-EEEEETCCCSSHHH-----
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccH------HHHHHHHHHHhh-cCchhhhhhhhhhhHHH-----
Confidence 467899999999999999999999999999999986553 334444433332 24699999999875332
Q ss_pred CcchhhhhhhhHHHHHHHHHHHHHhcCCC-----------CCCcEEEEEecCC----CCcCCccccCCCccceeeeccCC
Q 005611 289 DTTDHLYNAATQERETTLNQLLIELDGFD-----------TGKGVIFLAATNR----RDLLDPALLRPGRFDRKIRIRAP 353 (688)
Q Consensus 289 ~~~~~~~~~~~~~~~~~l~~LL~~ld~~~-----------~~~~viVIaaTN~----~~~Ld~aL~r~gRf~~~I~i~~P 353 (688)
-....+.+..+...+..-. -+.++-+..|.|. ...||+.++. +-|.+.+..|
T Consensus 101 ----------LS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~---lFRpvam~~P 167 (231)
T PF12774_consen 101 ----------LSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA---LFRPVAMMVP 167 (231)
T ss_dssp ----------HHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT---TEEEEE--S-
T ss_pred ----------HHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH---HhheeEEeCC
Confidence 1111222333333332111 1123344456663 3468888875 4578889999
Q ss_pred ChhhHHHH
Q 005611 354 NAKGRTEI 361 (688)
Q Consensus 354 d~~eR~~I 361 (688)
|.+.-.++
T Consensus 168 D~~~I~ei 175 (231)
T PF12774_consen 168 DLSLIAEI 175 (231)
T ss_dssp -HHHHHHH
T ss_pred CHHHHHHH
Confidence 97644443
No 361
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.91 E-value=1.4e-05 Score=80.87 Aligned_cols=30 Identities=27% Similarity=0.328 Sum_probs=26.6
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++.+++.
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 20 SFRVRRGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 556778888999999999999999999984
No 362
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.91 E-value=5.5e-06 Score=84.92 Aligned_cols=30 Identities=27% Similarity=0.439 Sum_probs=26.8
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++++++.
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 21 SFTVRPGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 556778888999999999999999999973
No 363
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.90 E-value=2.5e-05 Score=79.63 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=26.7
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.++++..+.|.||+|+|||||++++++.
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 20 SLEVPKGEVTCVLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 556778888999999999999999999973
No 364
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.90 E-value=2.7e-05 Score=79.50 Aligned_cols=30 Identities=37% Similarity=0.424 Sum_probs=26.3
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++.+++.
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 20 SLSVKQGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred eeEecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 455678888999999999999999999973
No 365
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.90 E-value=0.00011 Score=72.02 Aligned_cols=71 Identities=30% Similarity=0.327 Sum_probs=45.6
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhHHHHh------hh----------------------hhHH----
Q 005611 211 VLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLV------GV----------------------GSAR---- 255 (688)
Q Consensus 211 vLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~~~~~------g~----------------------~~~~---- 255 (688)
++++||||||||+++..++.+. +.++++++..+-.+.+. |. ..+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 6899999999999999876643 66777776543322210 10 0001
Q ss_pred --HHHHHHHHHhCCCeEEEEcccchhhh
Q 005611 256 --IRDLFKRAKVNKPSVIFIDEIDALAT 281 (688)
Q Consensus 256 --~r~~f~~A~~~~p~IL~LDEiD~l~~ 281 (688)
...+...+....|++++||++..+.+
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 12333444566899999999998765
No 366
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.90 E-value=5.5e-05 Score=73.44 Aligned_cols=29 Identities=41% Similarity=0.705 Sum_probs=26.9
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHH
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAG 230 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~ 230 (688)
++++.++..+.+.||+|||||||.+.+|+
T Consensus 25 sL~ia~ge~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 25 SLTIASGELVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred ceeecCCCEEEEEcCCCccHHHHHHHHhc
Confidence 66788888999999999999999999998
No 367
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.90 E-value=1.1e-05 Score=88.49 Aligned_cols=31 Identities=23% Similarity=0.428 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHhCCCeEEEEcccchhhhh
Q 005611 252 GSARIRDLFKRAKVNKPSVIFIDEIDALATR 282 (688)
Q Consensus 252 ~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~ 282 (688)
+++++|..+++|...+|.+|++||..+-.+.
T Consensus 152 gGq~QRVaLARAL~~~P~lLLLDEP~s~LD~ 182 (377)
T PRK11607 152 GGQRQRVALARSLAKRPKLLLLDEPMGALDK 182 (377)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 6788999999999999999999999875543
No 368
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.90 E-value=5.9e-05 Score=74.57 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=26.4
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++++++.
T Consensus 12 sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 12 NFAAERGEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 456778888999999999999999999973
No 369
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.89 E-value=4.6e-05 Score=76.31 Aligned_cols=30 Identities=33% Similarity=0.478 Sum_probs=26.5
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++.+++.
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 20 SLDLYAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 455678888999999999999999999984
No 370
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.89 E-value=2.3e-05 Score=78.95 Aligned_cols=31 Identities=35% Similarity=0.515 Sum_probs=27.2
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 232 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~ 232 (688)
++.+.++..+.|.||+|+|||||++.+++..
T Consensus 21 sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 21 NISISAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5567788889999999999999999999853
No 371
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.89 E-value=4e-05 Score=81.16 Aligned_cols=62 Identities=24% Similarity=0.285 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 005611 252 GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRR 331 (688)
Q Consensus 252 ~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~ 331 (688)
+++++|..++.|...+|.++|+||..+= .+......+.+++..+. ...+..|+.+|+.+
T Consensus 139 ~G~kqrl~ia~aL~~~P~lliLDEPt~G------------------LDp~~~~~~~~~l~~l~---~~g~~tvlissH~l 197 (293)
T COG1131 139 GGMKQRLSIALALLHDPELLILDEPTSG------------------LDPESRREIWELLRELA---KEGGVTILLSTHIL 197 (293)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCCcC------------------CCHHHHHHHHHHHHHHH---hCCCcEEEEeCCcH
Confidence 5667888899999999999999998763 34444555556665553 33335666678876
Q ss_pred CcC
Q 005611 332 DLL 334 (688)
Q Consensus 332 ~~L 334 (688)
+.+
T Consensus 198 ~e~ 200 (293)
T COG1131 198 EEA 200 (293)
T ss_pred HHH
Confidence 653
No 372
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.89 E-value=4.8e-05 Score=75.89 Aligned_cols=30 Identities=33% Similarity=0.418 Sum_probs=26.7
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++.+++.
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 21 SFHLPAGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 556778888999999999999999999984
No 373
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.89 E-value=2e-05 Score=75.41 Aligned_cols=79 Identities=28% Similarity=0.402 Sum_probs=55.9
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC--EEEeeCchhH-------HHHhh-----hhhHHHHHHHHHHHhCC
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--FYQMAGSEFV-------EVLVG-----VGSARIRDLFKRAKVNK 267 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~--~~~v~~~~~~-------~~~~g-----~~~~~~r~~f~~A~~~~ 267 (688)
++.+.++..+.|.||+|+|||+|++++++..... -+.++..... ...++ .++++.|..+.++....
T Consensus 19 ~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 19 SLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLN 98 (157)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcC
Confidence 4556777889999999999999999999866321 1223322111 01111 24677888899999999
Q ss_pred CeEEEEcccchhh
Q 005611 268 PSVIFIDEIDALA 280 (688)
Q Consensus 268 p~IL~LDEiD~l~ 280 (688)
|.++++||.+.-.
T Consensus 99 ~~i~ilDEp~~~l 111 (157)
T cd00267 99 PDLLLLDEPTSGL 111 (157)
T ss_pred CCEEEEeCCCcCC
Confidence 9999999998744
No 374
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.89 E-value=2.1e-05 Score=78.83 Aligned_cols=30 Identities=33% Similarity=0.389 Sum_probs=26.4
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++.+++.
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 20 SLHVKKGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 555677888999999999999999999974
No 375
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.88 E-value=1.1e-05 Score=87.66 Aligned_cols=30 Identities=23% Similarity=0.358 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHhCCCeEEEEcccchhhh
Q 005611 252 GSARIRDLFKRAKVNKPSVIFIDEIDALAT 281 (688)
Q Consensus 252 ~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~ 281 (688)
+++++|..+++|....|.++++||..+-.+
T Consensus 137 gGq~QRvaLARaL~~~P~llLLDEP~s~LD 166 (353)
T TIGR03265 137 GGQQQRVALARALATSPGLLLLDEPLSALD 166 (353)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 678899999999999999999999987543
No 376
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.88 E-value=9.5e-06 Score=82.12 Aligned_cols=30 Identities=30% Similarity=0.362 Sum_probs=26.6
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.++++..+.|.||+|+|||||++++++.
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 22 SLNVYKGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 556778888999999999999999999984
No 377
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.88 E-value=0.00014 Score=77.61 Aligned_cols=161 Identities=20% Similarity=0.275 Sum_probs=91.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCE--EEeeCchhHHHHhh-------hhhH-----------HHHHHHHHHHh
Q 005611 206 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPF--YQMAGSEFVEVLVG-------VGSA-----------RIRDLFKRAKV 265 (688)
Q Consensus 206 ~~~~gvLL~GppGtGKT~La~alA~~~~~~~--~~v~~~~~~~~~~g-------~~~~-----------~~r~~f~~A~~ 265 (688)
.+|+|++|||.-|||||+|.-..-..+.... -.+...+|...... ..+. ..-..++.-..
T Consensus 112 ~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eIa 191 (467)
T KOG2383|consen 112 GPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEIA 191 (467)
T ss_pred CCCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHHHh
Confidence 4699999999999999999998875442200 01122333222110 0000 00011222223
Q ss_pred CCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCC-CCcCCcc-ccCCCc
Q 005611 266 NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNR-RDLLDPA-LLRPGR 343 (688)
Q Consensus 266 ~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~-~~~Ld~a-L~r~gR 343 (688)
...++|.+||+.- .+-...-.+++|...|- +.+|+++||+|+ |++|-.. +.|
T Consensus 192 ~ea~lLCFDEfQV-------------------TDVADAmiL~rLf~~Lf----~~GvVlvATSNR~P~dLYknGlQR--- 245 (467)
T KOG2383|consen 192 EEAILLCFDEFQV-------------------TDVADAMILKRLFEHLF----KNGVVLVATSNRAPEDLYKNGLQR--- 245 (467)
T ss_pred hhceeeeechhhh-------------------hhHHHHHHHHHHHHHHH----hCCeEEEEeCCCChHHHhhcchhh---
Confidence 3467999999864 12223345566666553 248999999998 5555432 332
Q ss_pred cceeeeccCCChhhHHHHHHHHhccCcCCCccCHHHHHhhCC-C--C-CHHHHHHHHHHHHH
Q 005611 344 FDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLP-G--W-TGARLAQLVQEAAL 401 (688)
Q Consensus 344 f~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~-G--~-s~~dL~~lv~~A~~ 401 (688)
...+| -..+|+.++.-..+...+|+...++... + | +..|....+++--.
T Consensus 246 ---~~F~P------fI~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~fk 298 (467)
T KOG2383|consen 246 ---ENFIP------FIALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVETVLKEWFK 298 (467)
T ss_pred ---hhhhh------HHHHHHHhheEEecCCccchhhccCCCCceeEecChhhHHHHHHHHHH
Confidence 22222 2478889998888888899984443322 1 2 33477777777653
No 378
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.88 E-value=3.8e-05 Score=78.81 Aligned_cols=30 Identities=40% Similarity=0.547 Sum_probs=26.6
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++++++.
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 22 SLDIPSGELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 556778888999999999999999999984
No 379
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.87 E-value=0.00043 Score=73.32 Aligned_cols=127 Identities=15% Similarity=0.196 Sum_probs=85.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCC-----------C--EEEeeCchhHHHHhhhhhHHHHHHHHHHHh-----CC
Q 005611 206 KPPHGVLLEGPPGCGKTLVAKAIAGEAGV-----------P--FYQMAGSEFVEVLVGVGSARIRDLFKRAKV-----NK 267 (688)
Q Consensus 206 ~~~~gvLL~GppGtGKT~La~alA~~~~~-----------~--~~~v~~~~~~~~~~g~~~~~~r~~f~~A~~-----~~ 267 (688)
+.++..||+|+.|.||+++++.+++..-+ | +..++... ...+...++.+.+.... ..
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g-----~~i~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD-----KDLSKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC-----CcCCHHHHHHHHHHhccCCcccCC
Confidence 34567899999999999999999998732 1 12222000 00122455555554421 25
Q ss_pred CeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccCCCcccee
Q 005611 268 PSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRK 347 (688)
Q Consensus 268 p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r~gRf~~~ 347 (688)
..|++||++|.+... ..|.|+..++. ++.++++|..|+.++.+-+.+++ | +..
T Consensus 91 ~KvvII~~~e~m~~~----------------------a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--R-c~~ 143 (299)
T PRK07132 91 KKILIIKNIEKTSNS----------------------LLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--R-CQV 143 (299)
T ss_pred ceEEEEecccccCHH----------------------HHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--C-eEE
Confidence 579999999876422 33678888874 45566666677778899999888 6 458
Q ss_pred eeccCCChhhHHHHHHH
Q 005611 348 IRIRAPNAKGRTEILKI 364 (688)
Q Consensus 348 I~i~~Pd~~eR~~Il~~ 364 (688)
+++++|+.++..+.+..
T Consensus 144 ~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 144 FNVKEPDQQKILAKLLS 160 (299)
T ss_pred EECCCCCHHHHHHHHHH
Confidence 89999998877766654
No 380
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.87 E-value=3.3e-05 Score=77.62 Aligned_cols=30 Identities=33% Similarity=0.542 Sum_probs=26.2
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++.+++.
T Consensus 21 s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 21 SLTIKKGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 455677788999999999999999999983
No 381
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.87 E-value=2.6e-05 Score=79.71 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=26.8
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++.+++.
T Consensus 25 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 25 SLSVPKGEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 566778888999999999999999999984
No 382
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=6.3e-05 Score=72.75 Aligned_cols=117 Identities=21% Similarity=0.292 Sum_probs=74.5
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhcCC----CEEE-eeCch-----------------------------hHHH
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV----PFYQ-MAGSE-----------------------------FVEV 247 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~----~~~~-v~~~~-----------------------------~~~~ 247 (688)
++.+.++.-+.+.||.|+|||+|.|.+|+-+.- -.+. ..... |...
T Consensus 22 ~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~ 101 (209)
T COG4133 22 SFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQR 101 (209)
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHH
Confidence 455678888999999999999999999984311 0000 00000 0001
Q ss_pred Hhhh---------------------------hhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhH
Q 005611 248 LVGV---------------------------GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQ 300 (688)
Q Consensus 248 ~~g~---------------------------~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~ 300 (688)
+.+. .+++-|.++++.....+++-++||..+-.++
T Consensus 102 ~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk------------------ 163 (209)
T COG4133 102 FHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDK------------------ 163 (209)
T ss_pred HhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCH------------------
Confidence 1110 3445566677777777779999999876544
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCcCCccccC
Q 005611 301 ERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLR 340 (688)
Q Consensus 301 ~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~r 340 (688)
+....++.++.+- -..+=+||+||..|-.++++-.+
T Consensus 164 ~g~a~l~~l~~~H----~~~GGiVllttHq~l~~~~a~~~ 199 (209)
T COG4133 164 EGVALLTALMAAH----AAQGGIVLLTTHQPLPIASAQIR 199 (209)
T ss_pred HHHHHHHHHHHHH----hcCCCEEEEecCCccCCCccceE
Confidence 3345556665542 23555888899998888877665
No 383
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.86 E-value=3.5e-05 Score=77.28 Aligned_cols=29 Identities=21% Similarity=0.386 Sum_probs=24.8
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHH
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAG 230 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~ 230 (688)
++.+..++.+.+.||||||||+|.|.+.+
T Consensus 28 ~l~V~~Gei~~iiGgSGsGKStlLr~I~G 56 (263)
T COG1127 28 DLDVPRGEILAILGGSGSGKSTLLRLILG 56 (263)
T ss_pred eeeecCCcEEEEECCCCcCHHHHHHHHhc
Confidence 44556666799999999999999999997
No 384
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.86 E-value=2.7e-05 Score=78.41 Aligned_cols=30 Identities=33% Similarity=0.572 Sum_probs=26.7
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++++++.
T Consensus 22 s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 22 SLHIRKGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 556778888999999999999999999984
No 385
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.86 E-value=1.5e-05 Score=81.52 Aligned_cols=30 Identities=23% Similarity=0.496 Sum_probs=26.6
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++++++.
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 20 DLDVRRGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 556778888999999999999999999984
No 386
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.86 E-value=2.6e-05 Score=80.95 Aligned_cols=31 Identities=32% Similarity=0.613 Sum_probs=27.0
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 232 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~ 232 (688)
++.+.++..+.|.||+|+|||||++++++..
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 21 NLTLESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5567788889999999999999999999843
No 387
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.86 E-value=3e-05 Score=78.24 Aligned_cols=30 Identities=33% Similarity=0.422 Sum_probs=26.6
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++.+++.
T Consensus 23 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 23 NFHITKGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 556778888999999999999999999984
No 388
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.86 E-value=6.2e-05 Score=75.16 Aligned_cols=74 Identities=23% Similarity=0.436 Sum_probs=45.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh-----cCCCE-------------EEeeCchhH----HHHhhhhhHHHHHHHH
Q 005611 204 GIKPPHGVLLEGPPGCGKTLVAKAIAGE-----AGVPF-------------YQMAGSEFV----EVLVGVGSARIRDLFK 261 (688)
Q Consensus 204 g~~~~~gvLL~GppGtGKT~La~alA~~-----~~~~~-------------~~v~~~~~~----~~~~g~~~~~~r~~f~ 261 (688)
.+..++.++|.||+|+||||++|.++.. .|.++ ...+..+-. +.+. ....++..+++
T Consensus 21 ~l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~-~e~~~~~~iL~ 99 (199)
T cd03283 21 DMEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFY-AELRRLKEIVE 99 (199)
T ss_pred EEcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHH-HHHHHHHHHHH
Confidence 3445567999999999999999999853 34322 111111100 0111 11245666676
Q ss_pred HHHhCCCeEEEEcccch
Q 005611 262 RAKVNKPSVIFIDEIDA 278 (688)
Q Consensus 262 ~A~~~~p~IL~LDEiD~ 278 (688)
++....|+++++||..+
T Consensus 100 ~~~~~~p~llllDEp~~ 116 (199)
T cd03283 100 KAKKGEPVLFLLDEIFK 116 (199)
T ss_pred hccCCCCeEEEEecccC
Confidence 66556899999999865
No 389
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.86 E-value=1.6e-05 Score=84.77 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=26.4
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.++++..+.|.||+|+|||||++.+++.
T Consensus 13 s~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl 42 (302)
T TIGR01188 13 NFKVREGEVFGFLGPNGAGKTTTIRMLTTL 42 (302)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 456677888999999999999999999983
No 390
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.85 E-value=1.4e-05 Score=87.57 Aligned_cols=30 Identities=37% Similarity=0.691 Sum_probs=26.4
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++.|++.
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl 52 (369)
T PRK11000 23 NLDIHEGEFVVFVGPSGCGKSTLLRMIAGL 52 (369)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 556677788999999999999999999984
No 391
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.84 E-value=1.7e-05 Score=80.95 Aligned_cols=31 Identities=32% Similarity=0.530 Sum_probs=26.5
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 232 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~ 232 (688)
++.+.++..+.|.||+|+|||||++++++..
T Consensus 5 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 5 NLTIQQGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4456777889999999999999999999843
No 392
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.84 E-value=2.3e-05 Score=78.31 Aligned_cols=31 Identities=26% Similarity=0.518 Sum_probs=27.0
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 232 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~ 232 (688)
++.++++..+.|.||+|+|||||.+.+++..
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 20 SFTLAAGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5567788889999999999999999999843
No 393
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.84 E-value=7.9e-06 Score=88.58 Aligned_cols=30 Identities=20% Similarity=0.217 Sum_probs=26.6
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.++++..+.|.||+|+|||||++.+++.
T Consensus 25 sl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl 54 (343)
T PRK11153 25 SLHIPAGEIFGVIGASGAGKSTLIRCINLL 54 (343)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 566778888999999999999999999984
No 394
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.84 E-value=7.9e-05 Score=75.22 Aligned_cols=24 Identities=42% Similarity=0.632 Sum_probs=21.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHH
Q 005611 207 PPHGVLLEGPPGCGKTLVAKAIAG 230 (688)
Q Consensus 207 ~~~gvLL~GppGtGKT~La~alA~ 230 (688)
.|..+||||+||+|||++|+.++.
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCC
Confidence 356799999999999999999974
No 395
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.84 E-value=3.3e-05 Score=76.91 Aligned_cols=30 Identities=27% Similarity=0.523 Sum_probs=26.7
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++.+++.
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 20 SFTLNAGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 556778888999999999999999999984
No 396
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.83 E-value=5e-05 Score=76.39 Aligned_cols=30 Identities=27% Similarity=0.449 Sum_probs=26.8
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++++++.
T Consensus 20 s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 20 DLTVKKGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 556778888999999999999999999984
No 397
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.82 E-value=3.9e-05 Score=78.88 Aligned_cols=30 Identities=33% Similarity=0.427 Sum_probs=26.7
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++.+++.
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 21 NLEIAKGEFLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 556778888999999999999999999973
No 398
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=97.82 E-value=2.3e-05 Score=84.35 Aligned_cols=30 Identities=20% Similarity=0.441 Sum_probs=26.9
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+..+..+.|+||+|+|||||+++|++.
T Consensus 35 sl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl 64 (327)
T PRK11308 35 SFTLERGKTLAVVGESGCGKSTLARLLTMI 64 (327)
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 566778888999999999999999999983
No 399
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.82 E-value=2.3e-05 Score=81.19 Aligned_cols=31 Identities=26% Similarity=0.413 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHHhCCCeEEEEcccchhhhh
Q 005611 252 GSARIRDLFKRAKVNKPSVIFIDEIDALATR 282 (688)
Q Consensus 252 ~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~ 282 (688)
+++++|-.++||...+|.||+.||+++.++.
T Consensus 144 GGQKQRVaIARALa~~P~iLL~DEaTSALDP 174 (339)
T COG1135 144 GGQKQRVAIARALANNPKILLCDEATSALDP 174 (339)
T ss_pred cchhhHHHHHHHHhcCCCEEEecCccccCCh
Confidence 7899999999999999999999999986543
No 400
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.82 E-value=5.3e-05 Score=79.30 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=26.8
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.++++..+.|.||+|+|||||++++++.
T Consensus 29 sl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 29 SFNIPKGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 556778888999999999999999999984
No 401
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.82 E-value=2.1e-05 Score=80.44 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=26.6
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.++++..+.|.||+|+|||||++.+++.
T Consensus 29 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 29 SFSIGEGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 556778888999999999999999999984
No 402
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.81 E-value=3.6e-05 Score=79.72 Aligned_cols=79 Identities=27% Similarity=0.425 Sum_probs=54.0
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhcC-----------CCEEEe------------eCchhH--------HH---
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG-----------VPFYQM------------AGSEFV--------EV--- 247 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~~-----------~~~~~v------------~~~~~~--------~~--- 247 (688)
++.+.++..+.|.||+|+|||||++.+++... ..+.++ +..++. ..
T Consensus 24 s~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 103 (251)
T PRK09544 24 SLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILP 103 (251)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHH
Confidence 56677888899999999999999999998531 011110 000110 00
Q ss_pred ---Hhh------------hhhHHHHHHHHHHHhCCCeEEEEcccchhh
Q 005611 248 ---LVG------------VGSARIRDLFKRAKVNKPSVIFIDEIDALA 280 (688)
Q Consensus 248 ---~~g------------~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~ 280 (688)
..+ .+++++|..+++|...+|.++++||..+-.
T Consensus 104 ~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~L 151 (251)
T PRK09544 104 ALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGV 151 (251)
T ss_pred HHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 000 156778889999999999999999998744
No 403
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.81 E-value=2.1e-05 Score=81.78 Aligned_cols=79 Identities=25% Similarity=0.438 Sum_probs=53.5
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhcCC----------C-------EEEe-eCc------hhHHH----------
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV----------P-------FYQM-AGS------EFVEV---------- 247 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~----------~-------~~~v-~~~------~~~~~---------- 247 (688)
++.+.++..+.|.||+|+|||||++.|++.... + +.++ ... ...+.
T Consensus 32 sl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~ 111 (257)
T PRK11247 32 DLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWR 111 (257)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHH
Confidence 556677888999999999999999999984310 0 0000 000 00000
Q ss_pred -----H---hh------------hhhHHHHHHHHHHHhCCCeEEEEcccchhh
Q 005611 248 -----L---VG------------VGSARIRDLFKRAKVNKPSVIFIDEIDALA 280 (688)
Q Consensus 248 -----~---~g------------~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~ 280 (688)
+ .+ .+++++|..+++|...+|.++++||..+-.
T Consensus 112 ~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~L 164 (257)
T PRK11247 112 DAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGAL 164 (257)
T ss_pred HHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 0 00 056778889999999999999999998744
No 404
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.80 E-value=2.7e-05 Score=80.43 Aligned_cols=77 Identities=19% Similarity=0.233 Sum_probs=52.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcC----------CCEEEe----------eCchhHH--------------HH--
Q 005611 205 IKPPHGVLLEGPPGCGKTLVAKAIAGEAG----------VPFYQM----------AGSEFVE--------------VL-- 248 (688)
Q Consensus 205 ~~~~~gvLL~GppGtGKT~La~alA~~~~----------~~~~~v----------~~~~~~~--------------~~-- 248 (688)
++.+..+.|.||+|+|||||++.|++... ..+.++ +..+... .+
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~ 101 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAK 101 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHH
Confidence 45667799999999999999999998531 011000 0011110 00
Q ss_pred -hh------------hhhHHHHHHHHHHHhCCCeEEEEcccchhhh
Q 005611 249 -VG------------VGSARIRDLFKRAKVNKPSVIFIDEIDALAT 281 (688)
Q Consensus 249 -~g------------~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~ 281 (688)
.+ .+++++|..+++|....|.++++||..+-++
T Consensus 102 ~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD 147 (246)
T cd03237 102 PLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147 (246)
T ss_pred HcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 00 1567888899999999999999999987543
No 405
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.80 E-value=1.1e-05 Score=87.74 Aligned_cols=30 Identities=17% Similarity=0.290 Sum_probs=26.6
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+..+..+.|.||+|||||||.++|++.
T Consensus 13 s~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl 42 (363)
T TIGR01186 13 DLAIAKGEIFVIMGLSGSGKSTTVRMLNRL 42 (363)
T ss_pred EEEEcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 556778888999999999999999999984
No 406
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.80 E-value=0.00011 Score=69.38 Aligned_cols=27 Identities=33% Similarity=0.524 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc
Q 005611 206 KPPHGVLLEGPPGCGKTLVAKAIAGEA 232 (688)
Q Consensus 206 ~~~~gvLL~GppGtGKT~La~alA~~~ 232 (688)
+....+.++|+||+||||++..++..+
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHH
Confidence 344579999999999999999999765
No 407
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.80 E-value=4e-05 Score=77.08 Aligned_cols=30 Identities=27% Similarity=0.414 Sum_probs=26.6
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++.+++.
T Consensus 18 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 556778888999999999999999999983
No 408
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.79 E-value=3.4e-05 Score=83.13 Aligned_cols=31 Identities=26% Similarity=0.505 Sum_probs=27.5
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 232 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~ 232 (688)
++.++++..+.|+||+|+|||+|+++|++..
T Consensus 102 s~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~ 132 (329)
T PRK14257 102 NLDIKRNKVTAFIGPSGCGKSTFLRNLNQLN 132 (329)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 5667888889999999999999999999754
No 409
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=97.78 E-value=0.00029 Score=90.90 Aligned_cols=59 Identities=19% Similarity=0.226 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 005611 252 GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRR 331 (688)
Q Consensus 252 ~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~ 331 (688)
+++++|..+++|...+|.||++||..+- .+....+.+.+++..+. . +..||.+|+..
T Consensus 1064 GGqKQRLsLArALi~~PkVLLLDEPTSG------------------LDp~sr~~l~~lL~~l~---~--g~TIIltTHdm 1120 (2272)
T TIGR01257 1064 GGMQRKLSVAIAFVGDAKVVVLDEPTSG------------------VDPYSRRSIWDLLLKYR---S--GRTIIMSTHHM 1120 (2272)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCcC------------------CCHHHHHHHHHHHHHHh---C--CCEEEEEECCH
Confidence 6677888899999999999999999873 34444555666666652 2 23455567766
Q ss_pred Cc
Q 005611 332 DL 333 (688)
Q Consensus 332 ~~ 333 (688)
+.
T Consensus 1121 de 1122 (2272)
T TIGR01257 1121 DE 1122 (2272)
T ss_pred HH
Confidence 54
No 410
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.77 E-value=3.3e-05 Score=78.56 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=27.0
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 232 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~ 232 (688)
++.+.++..+.|.||+|+|||||++++++..
T Consensus 42 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 42 SFEVPRGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4567788889999999999999999999843
No 411
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.77 E-value=4.6e-05 Score=77.31 Aligned_cols=31 Identities=29% Similarity=0.386 Sum_probs=27.0
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 232 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~ 232 (688)
++.++++..+.|.||+|+|||||++.+++..
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 20 SLTVPKNSVYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5567788889999999999999999999843
No 412
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.77 E-value=8.8e-05 Score=76.24 Aligned_cols=30 Identities=30% Similarity=0.531 Sum_probs=26.4
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++++++.
T Consensus 22 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 22 NLNINPGEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 556778888999999999999999999873
No 413
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.77 E-value=5.9e-05 Score=77.36 Aligned_cols=30 Identities=33% Similarity=0.607 Sum_probs=26.5
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++++++.
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 21 SLSINPGEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 556778888999999999999999999973
No 414
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.76 E-value=2.7e-05 Score=82.96 Aligned_cols=30 Identities=30% Similarity=0.458 Sum_probs=26.7
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.++++..+.|.||+|+|||||++.+++.
T Consensus 24 sl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl 53 (303)
T TIGR01288 24 SFTIARGECFGLLGPNGAGKSTIARMLLGM 53 (303)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 566778888999999999999999999984
No 415
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.76 E-value=9.5e-05 Score=75.22 Aligned_cols=30 Identities=30% Similarity=0.615 Sum_probs=26.9
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.++++..+.|.||+|+|||||++++++.
T Consensus 27 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 27 SFSLRAGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 566778888999999999999999999984
No 416
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.76 E-value=7.7e-05 Score=79.58 Aligned_cols=61 Identities=25% Similarity=0.263 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 005611 252 GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRR 331 (688)
Q Consensus 252 ~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~ 331 (688)
+++++|..+++|...+|.+|++||..+-. +......+.+++.++. . .+..||.+|+..
T Consensus 141 ~G~~qrl~la~aL~~~P~lllLDEPt~gL------------------D~~~~~~l~~~l~~l~---~-~g~till~sH~l 198 (306)
T PRK13537 141 GGMKRRLTLARALVNDPDVLVLDEPTTGL------------------DPQARHLMWERLRSLL---A-RGKTILLTTHFM 198 (306)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCCcCC------------------CHHHHHHHHHHHHHHH---h-CCCEEEEECCCH
Confidence 56677888999999999999999987733 3344555566666653 2 234455567766
Q ss_pred CcC
Q 005611 332 DLL 334 (688)
Q Consensus 332 ~~L 334 (688)
+.+
T Consensus 199 ~e~ 201 (306)
T PRK13537 199 EEA 201 (306)
T ss_pred HHH
Confidence 543
No 417
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.76 E-value=3.4e-05 Score=83.90 Aligned_cols=30 Identities=40% Similarity=0.571 Sum_probs=26.5
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++.|++.
T Consensus 22 sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl 51 (353)
T PRK10851 22 SLDIPSGQMVALLGPSGSGKTTLLRIIAGL 51 (353)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 555677888999999999999999999983
No 418
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.76 E-value=9.7e-05 Score=75.76 Aligned_cols=30 Identities=33% Similarity=0.424 Sum_probs=26.3
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++.+++.
T Consensus 41 s~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 41 SFTIEKGEIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 455677888999999999999999999974
No 419
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.76 E-value=8.7e-05 Score=76.33 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=26.6
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++.+++.
T Consensus 23 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 23 SVKFEGGAIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 556778888999999999999999999984
No 420
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.76 E-value=3.3e-05 Score=81.33 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=26.8
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++++++.
T Consensus 27 sl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~ 56 (279)
T PRK13635 27 SFSVYEGEWVAIVGHNGSGKSTLAKLLNGL 56 (279)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 566778888999999999999999999984
No 421
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.75 E-value=0.00022 Score=72.92 Aligned_cols=77 Identities=22% Similarity=0.373 Sum_probs=47.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHH-hc--CCCEEEeeCchhHHH----Hh--hh---------------------h-
Q 005611 204 GIKPPHGVLLEGPPGCGKTLVAKAIAG-EA--GVPFYQMAGSEFVEV----LV--GV---------------------G- 252 (688)
Q Consensus 204 g~~~~~gvLL~GppGtGKT~La~alA~-~~--~~~~~~v~~~~~~~~----~~--g~---------------------~- 252 (688)
|++++..+++.||||||||+++..++. .+ +.+.++++..+-... .. |. +
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 567777899999999999999755443 32 556666654322211 10 00 0
Q ss_pred ---hHHHHHHHHHHHhCCCeEEEEcccchhh
Q 005611 253 ---SARIRDLFKRAKVNKPSVIFIDEIDALA 280 (688)
Q Consensus 253 ---~~~~r~~f~~A~~~~p~IL~LDEiD~l~ 280 (688)
...+..+...+...+|.++++||+..+.
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 1122233344444578999999999875
No 422
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.75 E-value=3.1e-05 Score=81.54 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=27.0
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||.+.+++.
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (279)
T PRK13650 27 SFHVKQGEWLSIIGHNGSGKSTTVRLIDGL 56 (279)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 566788889999999999999999999984
No 423
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.74 E-value=0.00023 Score=73.20 Aligned_cols=31 Identities=19% Similarity=0.358 Sum_probs=27.0
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 232 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~ 232 (688)
++.+.++..+.|.||+|+|||||++++++..
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 22 TLDCPQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5567788889999999999999999999843
No 424
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.74 E-value=3.2e-05 Score=77.98 Aligned_cols=31 Identities=29% Similarity=0.466 Sum_probs=27.4
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 232 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~ 232 (688)
++.+.++..+.|.||+|+|||||++++++..
T Consensus 18 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 5667888899999999999999999999843
No 425
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.74 E-value=3.5e-05 Score=78.07 Aligned_cols=29 Identities=34% Similarity=0.446 Sum_probs=26.1
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHH
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAG 230 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~ 230 (688)
++.+.++..+.|.||+|+|||||++.+++
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (222)
T cd03224 20 SLTVPEGEIVALLGRNGAGKTTLLKTIMG 48 (222)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhC
Confidence 55677888899999999999999999997
No 426
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.73 E-value=8.6e-05 Score=78.07 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=26.7
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||+++|++.
T Consensus 24 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl 53 (277)
T PRK13652 24 NFIAPRNSRIAVIGPNGAGKSTLFRHFNGI 53 (277)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 566778888999999999999999999974
No 427
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.73 E-value=3.7e-05 Score=78.28 Aligned_cols=30 Identities=27% Similarity=0.430 Sum_probs=26.9
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++.+++.
T Consensus 30 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 30 ELVVKRGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 566778889999999999999999999984
No 428
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.73 E-value=0.00011 Score=73.86 Aligned_cols=30 Identities=37% Similarity=0.591 Sum_probs=26.5
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.++++..+.|.||+|+|||||++.+++.
T Consensus 19 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 19 SFEVKPGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 556778888999999999999999999984
No 429
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.73 E-value=4.6e-05 Score=77.85 Aligned_cols=30 Identities=30% Similarity=0.519 Sum_probs=26.8
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++.+++.
T Consensus 19 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (232)
T PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGF 48 (232)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 566778889999999999999999999983
No 430
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.73 E-value=6.1e-05 Score=75.31 Aligned_cols=31 Identities=19% Similarity=0.233 Sum_probs=26.9
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 232 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~ 232 (688)
++.+.++..+.|.||+|+|||||++.+++..
T Consensus 18 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 18 NLTIEKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4556778889999999999999999999843
No 431
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.73 E-value=0.00013 Score=74.98 Aligned_cols=30 Identities=27% Similarity=0.486 Sum_probs=26.7
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++.+++.
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 21 DLNIDQGEVVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 556778888999999999999999999984
No 432
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.73 E-value=8.2e-05 Score=81.21 Aligned_cols=79 Identities=25% Similarity=0.490 Sum_probs=55.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhHHHHh------hh--------hhHHHHHHHHHHHhC
Q 005611 204 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLV------GV--------GSARIRDLFKRAKVN 266 (688)
Q Consensus 204 g~~~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~~~~~------g~--------~~~~~r~~f~~A~~~ 266 (688)
|+.++.-++|+|+||+|||+|+..++... +.++++++..+-.+... |. ....+..+++.....
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 57777889999999999999999998754 35677777654333211 11 112234455556667
Q ss_pred CCeEEEEcccchhhhh
Q 005611 267 KPSVIFIDEIDALATR 282 (688)
Q Consensus 267 ~p~IL~LDEiD~l~~~ 282 (688)
.|.+|+||++..+...
T Consensus 158 ~~~lVVIDSIq~l~~~ 173 (372)
T cd01121 158 KPDLVIIDSIQTVYSS 173 (372)
T ss_pred CCcEEEEcchHHhhcc
Confidence 8999999999988643
No 433
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.73 E-value=4.6e-05 Score=79.88 Aligned_cols=30 Identities=27% Similarity=0.416 Sum_probs=26.7
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++.+++.
T Consensus 29 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (271)
T PRK13632 29 SFEINEGEYVAILGHNGSGKSTISKILTGL 58 (271)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 556778888999999999999999999984
No 434
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.72 E-value=2.5e-05 Score=81.51 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=26.6
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.++++..+.|.||+|+|||||++++++.
T Consensus 31 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T PRK10575 31 SLTFPAGKVTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 556778888999999999999999999973
No 435
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.72 E-value=3.4e-05 Score=84.10 Aligned_cols=30 Identities=40% Similarity=0.603 Sum_probs=26.2
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+..+..+.|.||+|+|||||.+.||+.
T Consensus 25 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl 54 (362)
T TIGR03258 25 SLEIEAGELLALIGKSGCGKTTLLRAIAGF 54 (362)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 555677778999999999999999999973
No 436
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.72 E-value=7.8e-05 Score=78.04 Aligned_cols=31 Identities=16% Similarity=0.320 Sum_probs=26.8
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 232 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~ 232 (688)
++.+.++..+.|.||+|+|||||+++|++..
T Consensus 44 s~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 44 SLDVREGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4556778889999999999999999999843
No 437
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.70 E-value=9.2e-05 Score=74.11 Aligned_cols=29 Identities=28% Similarity=0.578 Sum_probs=26.7
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHH
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAG 230 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~ 230 (688)
++.++.+.-+.|.||+|+|||||.|.+.+
T Consensus 24 nl~I~~GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 24 NLEINQGEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred eEEeCCCcEEEEECCCCCcHHHHHHHHhc
Confidence 66678888899999999999999999998
No 438
>PRK10908 cell division protein FtsE; Provisional
Probab=97.70 E-value=6.9e-05 Score=75.98 Aligned_cols=30 Identities=30% Similarity=0.538 Sum_probs=26.8
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.++++..+.|.||+|+|||||++.+++.
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 22 TFHMRPGEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 566778888999999999999999999984
No 439
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.69 E-value=0.00016 Score=73.85 Aligned_cols=31 Identities=42% Similarity=0.626 Sum_probs=27.1
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 232 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~ 232 (688)
++.+.++..+.|.||+|+|||||.+.+++..
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~ 50 (232)
T cd03300 20 SLDIKEGEFFTLLGPSGCGKTTLLRLIAGFE 50 (232)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4557788899999999999999999999843
No 440
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.69 E-value=9.4e-05 Score=72.11 Aligned_cols=59 Identities=24% Similarity=0.406 Sum_probs=35.1
Q ss_pred ccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC---EEEeeCchh
Q 005611 177 VAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP---FYQMAGSEF 244 (688)
Q Consensus 177 V~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~---~~~v~~~~~ 244 (688)
.+|.++..++|...+.. . ....++.++|+|++|+|||++++.+...+..+ ++..++...
T Consensus 2 fvgR~~e~~~l~~~l~~-~--------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-A--------QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-T--------SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-H--------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 46888887777766531 1 12345789999999999999999887755332 666655554
No 441
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.69 E-value=0.00016 Score=80.70 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCEEEe
Q 005611 207 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 239 (688)
Q Consensus 207 ~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v 239 (688)
..-++||+|.||||||.+.|.++.-+...++..
T Consensus 481 GDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tT 513 (854)
T KOG0477|consen 481 GDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTT 513 (854)
T ss_pred cceeEEEecCCCccHHHHHHHHHhcCcceeEec
Confidence 334699999999999999999999887776654
No 442
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.69 E-value=3.3e-05 Score=77.64 Aligned_cols=59 Identities=29% Similarity=0.335 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 005611 252 GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRR 331 (688)
Q Consensus 252 ~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~ 331 (688)
+++++|..+++|....|.++++||..+-. +......+.+++..+. .. . .+|.+|+++
T Consensus 133 ~G~~qrv~la~al~~~p~llllDEPt~~L------------------D~~~~~~l~~~l~~~~---~~-~-tii~vsH~~ 189 (211)
T cd03264 133 GGMRRRVGIAQALVGDPSILIVDEPTAGL------------------DPEERIRFRNLLSELG---ED-R-IVILSTHIV 189 (211)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccC------------------CHHHHHHHHHHHHHHh---CC-C-EEEEEcCCH
Confidence 55677888999999999999999998744 3334455556666553 22 2 344456655
Q ss_pred Cc
Q 005611 332 DL 333 (688)
Q Consensus 332 ~~ 333 (688)
+.
T Consensus 190 ~~ 191 (211)
T cd03264 190 ED 191 (211)
T ss_pred HH
Confidence 43
No 443
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.68 E-value=9.7e-05 Score=75.68 Aligned_cols=29 Identities=31% Similarity=0.437 Sum_probs=26.3
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHH
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAG 230 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~ 230 (688)
++.+.++..+.|.||+|+|||||.+++++
T Consensus 25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T PRK11614 25 SLHINQGEIVTLIGANGAGKTTLLGTLCG 53 (237)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 56678888899999999999999999987
No 444
>PHA00729 NTP-binding motif containing protein
Probab=97.68 E-value=7.2e-05 Score=75.46 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=22.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC
Q 005611 210 GVLLEGPPGCGKTLVAKAIAGEAG 233 (688)
Q Consensus 210 gvLL~GppGtGKT~La~alA~~~~ 233 (688)
+++|+|+||||||++|.+++++++
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999999875
No 445
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.67 E-value=4.7e-05 Score=81.08 Aligned_cols=30 Identities=30% Similarity=0.382 Sum_probs=26.5
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||.+.+++.
T Consensus 22 s~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 22 SFEAQKGRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred EEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 556778888999999999999999999973
No 446
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.67 E-value=3.8e-05 Score=83.55 Aligned_cols=31 Identities=26% Similarity=0.364 Sum_probs=26.6
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 232 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~ 232 (688)
++.+.++..+.|.||+|+|||||++.|++..
T Consensus 18 sl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~ 48 (352)
T PRK11144 18 NLTLPAQGITAIFGRSGAGKTSLINAISGLT 48 (352)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4556777889999999999999999999843
No 447
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.66 E-value=0.0001 Score=76.33 Aligned_cols=31 Identities=23% Similarity=0.434 Sum_probs=27.3
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 232 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~ 232 (688)
++.+.++..+.|.||+|+|||||++.+++..
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 20 NFSVAAGEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5667888889999999999999999999843
No 448
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.66 E-value=0.00013 Score=74.59 Aligned_cols=30 Identities=33% Similarity=0.479 Sum_probs=26.3
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++++++.
T Consensus 20 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 20 SFSVRPGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred eEEecCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 556677888999999999999999999973
No 449
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.66 E-value=2.2e-05 Score=86.58 Aligned_cols=30 Identities=17% Similarity=0.317 Sum_probs=26.3
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.++++..+.|.||+|+|||||++.+++.
T Consensus 48 sl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl 77 (400)
T PRK10070 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRL 77 (400)
T ss_pred EEEEcCCCEEEEECCCCchHHHHHHHHHcC
Confidence 455677888999999999999999999984
No 450
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.66 E-value=0.00036 Score=71.35 Aligned_cols=40 Identities=30% Similarity=0.529 Sum_probs=31.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCch
Q 005611 204 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSE 243 (688)
Q Consensus 204 g~~~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~ 243 (688)
|++.+..++++|+||+|||+++..++.+. +.+.++++..+
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 67788889999999999999999996542 56666666543
No 451
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.66 E-value=0.0005 Score=77.06 Aligned_cols=79 Identities=24% Similarity=0.473 Sum_probs=57.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhHHHHh------hh--------hhHHHHHHHHHHHhC
Q 005611 204 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLV------GV--------GSARIRDLFKRAKVN 266 (688)
Q Consensus 204 g~~~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~~~~~------g~--------~~~~~r~~f~~A~~~ 266 (688)
|+.++..++|+|+||+|||+|+..++... +.++++++..+..+... |. ....+..+++.....
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 67777889999999999999999998754 56788887765444321 11 112234455566667
Q ss_pred CCeEEEEcccchhhhh
Q 005611 267 KPSVIFIDEIDALATR 282 (688)
Q Consensus 267 ~p~IL~LDEiD~l~~~ 282 (688)
.|.+|+||++..+...
T Consensus 156 ~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 156 KPDLVVIDSIQTMYSP 171 (446)
T ss_pred CCCEEEEechhhhccc
Confidence 8999999999988654
No 452
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.66 E-value=0.00016 Score=74.21 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=26.8
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.++++..+.|.||+|+|||||++.+++.
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 23 SLTVNSGEIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 556778888999999999999999999984
No 453
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.66 E-value=2.6e-05 Score=86.03 Aligned_cols=60 Identities=28% Similarity=0.320 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 005611 252 GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRR 331 (688)
Q Consensus 252 ~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~ 331 (688)
+++++|..+++|...+|.+|+|||-.+-++. .....+.+++.++.. . +..||.+|+..
T Consensus 142 gGerQRv~IArAL~~~P~iLLLDEPtsgLD~------------------~~~~~l~~lL~~l~~---~-g~TIIivsHdl 199 (402)
T PRK09536 142 GGERQRVLLARALAQATPVLLLDEPTASLDI------------------NHQVRTLELVRRLVD---D-GKTAVAAIHDL 199 (402)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCH------------------HHHHHHHHHHHHHHh---c-CCEEEEEECCH
Confidence 6778899999999999999999999875433 333444556666532 1 23455567765
Q ss_pred Cc
Q 005611 332 DL 333 (688)
Q Consensus 332 ~~ 333 (688)
+.
T Consensus 200 ~~ 201 (402)
T PRK09536 200 DL 201 (402)
T ss_pred HH
Confidence 54
No 454
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=97.66 E-value=5.7e-05 Score=81.30 Aligned_cols=31 Identities=29% Similarity=0.376 Sum_probs=27.5
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 232 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~ 232 (688)
++.+..+..+.|+||+|+|||||++++++..
T Consensus 27 sl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll 57 (326)
T PRK11022 27 SYSVKQGEVVGIVGESGSGKSVSSLAIMGLI 57 (326)
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 5667888889999999999999999999854
No 455
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.65 E-value=0.00014 Score=75.73 Aligned_cols=30 Identities=33% Similarity=0.698 Sum_probs=26.5
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.++++..+.|.||+|+|||||++.+++.
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 51 (258)
T PRK13548 22 SLTLRPGEVVAILGPNGAGKSTLLRALSGE 51 (258)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 556777888999999999999999999984
No 456
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.65 E-value=9.5e-05 Score=73.94 Aligned_cols=79 Identities=18% Similarity=0.297 Sum_probs=53.9
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhcC-----------CCEEEeeC------------------c-hhHH-----
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG-----------VPFYQMAG------------------S-EFVE----- 246 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~~-----------~~~~~v~~------------------~-~~~~----- 246 (688)
++.++++..+.|.||+|+|||||++.+++... +-++.-+. . ....
T Consensus 25 s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~ 104 (204)
T cd03250 25 NLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKAC 104 (204)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHc
Confidence 56678888899999999999999999998541 00100000 0 0000
Q ss_pred ---HHhh-----------------hhhHHHHHHHHHHHhCCCeEEEEcccchhh
Q 005611 247 ---VLVG-----------------VGSARIRDLFKRAKVNKPSVIFIDEIDALA 280 (688)
Q Consensus 247 ---~~~g-----------------~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~ 280 (688)
.++. .+++++|..+++|...+|.++++||..+-.
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~L 158 (204)
T cd03250 105 ALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAV 158 (204)
T ss_pred CcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 0010 145678888999999999999999988744
No 457
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.65 E-value=3.8e-05 Score=71.43 Aligned_cols=31 Identities=42% Similarity=0.627 Sum_probs=26.3
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 232 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~ 232 (688)
++.++++..+.|+||+|+|||||.+++++..
T Consensus 5 ~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 5 SLEIKPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEEccCCCccccceeeecccc
Confidence 3446778889999999999999999999843
No 458
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.65 E-value=4.3e-05 Score=79.97 Aligned_cols=30 Identities=27% Similarity=0.484 Sum_probs=26.6
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++.|++.
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (269)
T PRK11831 27 SLTVPRGKITAIMGPSGIGKTTLLRLIGGQ 56 (269)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 556778888999999999999999999974
No 459
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.64 E-value=0.0025 Score=66.05 Aligned_cols=95 Identities=24% Similarity=0.304 Sum_probs=59.8
Q ss_pred ccccHHHHHHHHHHHHH-hcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-----CEEE-----eeCc--h
Q 005611 177 VAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV-----PFYQ-----MAGS--E 243 (688)
Q Consensus 177 V~G~~~~k~~L~~ii~~-l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~-----~~~~-----v~~~--~ 243 (688)
++|+.-+++.+-..+.. +.++. -+.|-.+-++|+|||||..+++.||+.... +++. .+++ .
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~ 157 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHAS 157 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChH
Confidence 69999888887777664 54442 234556779999999999999999996622 1110 0111 1
Q ss_pred hHHHHhhhhhHHHHHHHHHHHhCCCeEEEEcccchhh
Q 005611 244 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALA 280 (688)
Q Consensus 244 ~~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~ 280 (688)
-.+.|..+-..++++ .+..+..+|.++||.|.+.
T Consensus 158 ~ie~Yk~eL~~~v~~---~v~~C~rslFIFDE~DKmp 191 (344)
T KOG2170|consen 158 KIEDYKEELKNRVRG---TVQACQRSLFIFDEVDKLP 191 (344)
T ss_pred HHHHHHHHHHHHHHH---HHHhcCCceEEechhhhcC
Confidence 122232222333333 3445677799999999964
No 460
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.64 E-value=5.9e-05 Score=77.19 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=26.6
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++.+++.
T Consensus 21 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 21 SFTIPAGKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 556778888999999999999999999984
No 461
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.64 E-value=0.00021 Score=71.60 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=52.9
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhcCC----------------------CEEEe-eCc-----hhHHH------
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV----------------------PFYQM-AGS-----EFVEV------ 247 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~----------------------~~~~v-~~~-----~~~~~------ 247 (688)
++.+.++..+.|.||+|+|||||++++++.... .+.++ ..+ ...+.
T Consensus 28 sl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~ 107 (207)
T cd03369 28 SFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDE 107 (207)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHhcccCC
Confidence 556778888999999999999999999984310 00000 000 00000
Q ss_pred --------Hhh--------hhhHHHHHHHHHHHhCCCeEEEEcccchhh
Q 005611 248 --------LVG--------VGSARIRDLFKRAKVNKPSVIFIDEIDALA 280 (688)
Q Consensus 248 --------~~g--------~~~~~~r~~f~~A~~~~p~IL~LDEiD~l~ 280 (688)
... .+++++|..+++|...+|.++++||..+-.
T Consensus 108 ~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~L 156 (207)
T cd03369 108 YSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASI 156 (207)
T ss_pred CCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccC
Confidence 000 145678888999999999999999997643
No 462
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.64 E-value=5.7e-05 Score=77.39 Aligned_cols=30 Identities=33% Similarity=0.426 Sum_probs=26.5
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++.+++.
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 22 SLRIKPGEVVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 555678888999999999999999999974
No 463
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=97.64 E-value=6.8e-05 Score=80.86 Aligned_cols=29 Identities=31% Similarity=0.565 Sum_probs=26.3
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHH
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAG 230 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~ 230 (688)
++.+..+..+.|+|++|+|||||+++|++
T Consensus 41 sl~i~~Ge~~~lvG~sGsGKSTLlk~i~G 69 (331)
T PRK15079 41 TLRLYEGETLGVVGESGCGKSTFARAIIG 69 (331)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 55677888899999999999999999998
No 464
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.64 E-value=9.1e-05 Score=76.50 Aligned_cols=31 Identities=32% Similarity=0.504 Sum_probs=27.0
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 232 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~ 232 (688)
++.++++..+.|.||+|+|||||++++++..
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 23 DLEVKPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5567788889999999999999999999743
No 465
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.63 E-value=0.00054 Score=70.75 Aligned_cols=81 Identities=22% Similarity=0.308 Sum_probs=48.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCC------EEEeeC------chhHHHH--------hhh-hhHHH---HHHH
Q 005611 205 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP------FYQMAG------SEFVEVL--------VGV-GSARI---RDLF 260 (688)
Q Consensus 205 ~~~~~gvLL~GppGtGKT~La~alA~~~~~~------~~~v~~------~~~~~~~--------~g~-~~~~~---r~~f 260 (688)
+..+..++|.||+|+|||+|++.+++..... ++.+.. .+++... .+. ...+. +..+
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 3456679999999999999999999877542 223121 2233332 111 11111 1223
Q ss_pred HHHH----hCCCeEEEEcccchhhhhhcC
Q 005611 261 KRAK----VNKPSVIFIDEIDALATRRQG 285 (688)
Q Consensus 261 ~~A~----~~~p~IL~LDEiD~l~~~~~~ 285 (688)
+.|. .....+||+||++++.....+
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r~a~a~~e 121 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITRLARAYNT 121 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHHhhhhhhh
Confidence 3332 245679999999999866543
No 466
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.63 E-value=0.00021 Score=74.57 Aligned_cols=30 Identities=27% Similarity=0.524 Sum_probs=26.6
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++++++.
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 56 (265)
T PRK10253 27 TVEIPDGHFTAIIGPNGCGKSTLLRTLSRL 56 (265)
T ss_pred ceEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 556678888999999999999999999984
No 467
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=97.63 E-value=0.00011 Score=76.74 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=27.3
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 232 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~ 232 (688)
++.++++..+.|.||+|+|||||.+.+++..
T Consensus 33 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~ 63 (267)
T PRK15112 33 SFTLREGQTLAIIGENGSGKSTLAKMLAGMI 63 (267)
T ss_pred eEEecCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 5667788889999999999999999999843
No 468
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.63 E-value=0.00042 Score=70.41 Aligned_cols=79 Identities=20% Similarity=0.310 Sum_probs=50.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchh----HHHHhhh---------------hhHHHHHHHH
Q 005611 204 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEF----VEVLVGV---------------GSARIRDLFK 261 (688)
Q Consensus 204 g~~~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~----~~~~~g~---------------~~~~~r~~f~ 261 (688)
|++.+.-++++||||+|||+++..++.+. +.+.++++...+ .....+. ....+...+.
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 98 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIR 98 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHH
Confidence 56777789999999999999999998644 667777776621 1111110 0001111121
Q ss_pred H---HHhCCCeEEEEcccchhhhh
Q 005611 262 R---AKVNKPSVIFIDEIDALATR 282 (688)
Q Consensus 262 ~---A~~~~p~IL~LDEiD~l~~~ 282 (688)
. ....++++|+||-+.++...
T Consensus 99 ~~~~~~~~~~~lvVIDsi~al~~~ 122 (225)
T PRK09361 99 KAEKLAKENVGLIVLDSATSLYRL 122 (225)
T ss_pred HHHHHHHhcccEEEEeCcHHHhHH
Confidence 1 11157899999999998754
No 469
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.62 E-value=0.0001 Score=77.14 Aligned_cols=30 Identities=23% Similarity=0.399 Sum_probs=26.3
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++++++.
T Consensus 21 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (271)
T PRK13638 21 NLDFSLSPVTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 556677888999999999999999999973
No 470
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.62 E-value=0.00018 Score=75.95 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=26.8
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.++++..+.|.||+|+|||||++.|++.
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl 56 (286)
T PRK13646 27 NTEFEQGKYYAIVGQTGSGKSTLIQNINAL 56 (286)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 566778888999999999999999999974
No 471
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.62 E-value=0.00035 Score=74.50 Aligned_cols=79 Identities=22% Similarity=0.313 Sum_probs=51.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhHHHH----hhh------------hhHHHHHHHHHHH
Q 005611 204 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVL----VGV------------GSARIRDLFKRAK 264 (688)
Q Consensus 204 g~~~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~~~~----~g~------------~~~~~r~~f~~A~ 264 (688)
|++.+..++|+||||||||+|+-.++.++ +.+.++++..+..+.. .|. .++.+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 56777789999999999999988776544 5666777654433221 111 1222222223334
Q ss_pred hCCCeEEEEcccchhhhh
Q 005611 265 VNKPSVIFIDEIDALATR 282 (688)
Q Consensus 265 ~~~p~IL~LDEiD~l~~~ 282 (688)
...+++|+||-+.++.++
T Consensus 131 ~~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPK 148 (321)
T ss_pred ccCCcEEEEcchhhhccc
Confidence 567899999999998764
No 472
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=97.62 E-value=4.7e-05 Score=82.93 Aligned_cols=30 Identities=27% Similarity=0.345 Sum_probs=26.2
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++++++.
T Consensus 17 sl~i~~Gei~~l~G~nGsGKSTLl~~iaGl 46 (354)
T TIGR02142 17 DFTLPGQGVTAIFGRSGSGKTTLIRLIAGL 46 (354)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 455677788999999999999999999984
No 473
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.62 E-value=0.00015 Score=74.19 Aligned_cols=30 Identities=27% Similarity=0.532 Sum_probs=26.8
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++.+++.
T Consensus 19 s~~i~~Ge~~~i~G~nG~GKStLl~~l~G~ 48 (235)
T cd03299 19 SLEVERGDYFVILGPTGSGKSVLLETIAGF 48 (235)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 556778889999999999999999999884
No 474
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=97.61 E-value=0.00022 Score=73.14 Aligned_cols=30 Identities=33% Similarity=0.519 Sum_probs=26.6
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||.+.+++.
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (237)
T TIGR00968 20 NLEVPTGSLVALLGPSGSGKSTLLRIIAGL 49 (237)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 455778888999999999999999999984
No 475
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.61 E-value=0.00011 Score=74.17 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=25.8
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 232 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~ 232 (688)
++.+.+ ..+.|.||+|+|||||++.+++..
T Consensus 18 sl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 18 DFDLNE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred eEEEcc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 455677 889999999999999999999843
No 476
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.61 E-value=0.00024 Score=76.92 Aligned_cols=60 Identities=22% Similarity=0.240 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHHhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 005611 252 GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRR 331 (688)
Q Consensus 252 ~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTN~~ 331 (688)
+++++|..+++|...+|.+|++||..+- .+......+.+++.++. .. +..||.+|+..
T Consensus 175 ~G~kqrv~lA~aL~~~P~lLiLDEPt~g------------------LD~~~r~~l~~~l~~l~---~~-g~tilisSH~l 232 (340)
T PRK13536 175 GGMKRRLTLARALINDPQLLILDEPTTG------------------LDPHARHLIWERLRSLL---AR-GKTILLTTHFM 232 (340)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCC------------------CCHHHHHHHHHHHHHHH---hC-CCEEEEECCCH
Confidence 5667788899999999999999999873 33444555666666653 22 33455567665
Q ss_pred Cc
Q 005611 332 DL 333 (688)
Q Consensus 332 ~~ 333 (688)
+.
T Consensus 233 ~e 234 (340)
T PRK13536 233 EE 234 (340)
T ss_pred HH
Confidence 54
No 477
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.60 E-value=6.3e-05 Score=78.99 Aligned_cols=31 Identities=29% Similarity=0.356 Sum_probs=27.5
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 232 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~ 232 (688)
++.++++..+.|+||+|+|||||+++|++..
T Consensus 24 sl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~ 54 (275)
T cd03289 24 SFSISPGQRVGLLGRTGSGKSTLLSAFLRLL 54 (275)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 5667888899999999999999999999843
No 478
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.60 E-value=8.2e-05 Score=77.68 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=27.2
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 232 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~ 232 (688)
++.+.++..+.|.||+|+|||||++.+++..
T Consensus 44 s~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~ 74 (264)
T PRK13546 44 SLKAYEGDVIGLVGINGSGKSTLSNIIGGSL 74 (264)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4557788889999999999999999999854
No 479
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.60 E-value=9.4e-05 Score=77.64 Aligned_cols=30 Identities=27% Similarity=0.421 Sum_probs=26.9
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++++++.
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (274)
T PRK13647 25 SLSIPEGSKTALLGPNGAGKSTLLLHLNGI 54 (274)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 566788889999999999999999999973
No 480
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.60 E-value=0.00012 Score=76.94 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=27.0
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.++++..+.|.||+|+|||||.+++++.
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (274)
T PRK13644 22 NLVIKKGEYIGIIGKNGSGKSTLALHLNGL 51 (274)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 566788889999999999999999999984
No 481
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.60 E-value=9.9e-05 Score=77.84 Aligned_cols=31 Identities=29% Similarity=0.353 Sum_probs=27.2
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 232 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~ 232 (688)
++.+.++..+.|.||+|+|||||+++|++..
T Consensus 27 ~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~ 57 (282)
T PRK13640 27 SFSIPRGSWTALIGHNGSGKSTISKLINGLL 57 (282)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhccc
Confidence 5567778889999999999999999999854
No 482
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.60 E-value=8.3e-05 Score=76.22 Aligned_cols=30 Identities=33% Similarity=0.565 Sum_probs=26.9
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.++++..+.|.||+|+|||||++++++.
T Consensus 23 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 23 SLTIPPGKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred EEEecCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 566778888999999999999999999984
No 483
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.59 E-value=4.5e-05 Score=68.25 Aligned_cols=23 Identities=39% Similarity=0.702 Sum_probs=20.4
Q ss_pred EEEEcCCCChHHHHHHHHHHhcC
Q 005611 211 VLLEGPPGCGKTLVAKAIAGEAG 233 (688)
Q Consensus 211 vLL~GppGtGKT~La~alA~~~~ 233 (688)
|.|+||||+|||++++.|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999988663
No 484
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.59 E-value=0.00016 Score=73.41 Aligned_cols=30 Identities=27% Similarity=0.451 Sum_probs=26.8
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.++++..+.|.||+|+|||||++++++.
T Consensus 34 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 34 SFTLHPGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 556778888999999999999999999984
No 485
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.59 E-value=3.5e-05 Score=81.01 Aligned_cols=30 Identities=30% Similarity=0.395 Sum_probs=26.8
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++++++.
T Consensus 27 ~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 56 (277)
T PRK13642 27 SFSITKGEWVSIIGQNGSGKSTTARLIDGL 56 (277)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 566778888999999999999999999973
No 486
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.58 E-value=0.00016 Score=73.56 Aligned_cols=30 Identities=37% Similarity=0.501 Sum_probs=26.5
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.++++..+.|.||+|+|||||.+.+++.
T Consensus 25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 25 SFSIKKGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 556778888999999999999999999974
No 487
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.58 E-value=0.00028 Score=72.90 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=27.2
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 232 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~ 232 (688)
++.++++..+.|.||+|+|||||++++++..
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 23 NLEIPDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 5567788889999999999999999999863
No 488
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.58 E-value=8.7e-05 Score=75.06 Aligned_cols=30 Identities=30% Similarity=0.457 Sum_probs=26.6
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++.+++.
T Consensus 24 ~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 24 SLTIRAGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 556778888999999999999999999984
No 489
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.58 E-value=0.00027 Score=71.95 Aligned_cols=31 Identities=32% Similarity=0.500 Sum_probs=26.8
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 232 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~ 232 (688)
++.++++..+.|.||+|+|||||++++++..
T Consensus 23 sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 23 NFSIKPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 5566778889999999999999999999843
No 490
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.58 E-value=7.5e-05 Score=78.93 Aligned_cols=30 Identities=27% Similarity=0.348 Sum_probs=26.7
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++++++.
T Consensus 27 s~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl 56 (287)
T PRK13637 27 NIEIEDGEFVGLIGHTGSGKSTLIQHLNGL 56 (287)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 566778888999999999999999999973
No 491
>PTZ00202 tuzin; Provisional
Probab=97.58 E-value=0.0036 Score=68.51 Aligned_cols=62 Identities=18% Similarity=0.333 Sum_probs=49.4
Q ss_pred cccccccccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeeCc
Q 005611 172 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS 242 (688)
Q Consensus 172 v~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~~~~~~v~~~ 242 (688)
-...+..|.+....+|..++... ....+.-+.|.||+|||||++++.+.+.++.+.+..+..
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~---------d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRL---------DTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhcc---------CCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 34567899999999998887532 223445789999999999999999999999887777665
No 492
>PF14516 AAA_35: AAA-like domain
Probab=97.57 E-value=0.0033 Score=67.84 Aligned_cols=177 Identities=15% Similarity=0.149 Sum_probs=96.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeeCchhHH-----------HHhhh--------------------
Q 005611 206 KPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE-----------VLVGV-------------------- 251 (688)
Q Consensus 206 ~~~~gvLL~GppGtGKT~La~alA~~~---~~~~~~v~~~~~~~-----------~~~g~-------------------- 251 (688)
+++.-+.|.||..+|||++...+.+.+ +...+.+++..+.. .+...
T Consensus 29 ~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~ 108 (331)
T PF14516_consen 29 QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIG 108 (331)
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcC
Confidence 456679999999999999999887655 56666666544211 11000
Q ss_pred hhHHHHHHHHHH---HhCCCeEEEEcccchhhhhhcCCccCcchhhhhhhhHHHHHHHHHHHHHhcCCCCCCcE-EEEEe
Q 005611 252 GSARIRDLFKRA---KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGV-IFLAA 327 (688)
Q Consensus 252 ~~~~~r~~f~~A---~~~~p~IL~LDEiD~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~v-iVIaa 327 (688)
........|++. ....|=||+|||+|.+..... ...+.-..+..+...-........+ ++++-
T Consensus 109 ~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~-------------~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~ 175 (331)
T PF14516_consen 109 SKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ-------------IADDFFGLLRSWYEQRKNNPIWQKLRLILAG 175 (331)
T ss_pred ChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcc-------------hHHHHHHHHHHHHHhcccCcccceEEEEEec
Confidence 111233344432 224688999999999875321 1111222222222211111111222 33333
Q ss_pred cCCCCcCCccccCCCccceeeeccCCChhhHHHHHHHHhccCcCCCccCHHHHHhhCCCCCHHHHHHHHHHH
Q 005611 328 TNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEA 399 (688)
Q Consensus 328 TN~~~~Ld~aL~r~gRf~~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~G~s~~dL~~lv~~A 399 (688)
+..+......-.+|-.+...++++.-+.++-..+++.+-.. .... .+..+-..+.| -|.=+..+|...
T Consensus 176 ~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~~~-~~~~l~~~tgG-hP~Lv~~~~~~l 243 (331)
T PF14516_consen 176 STEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--FSQE-QLEQLMDWTGG-HPYLVQKACYLL 243 (331)
T ss_pred CcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--CCHH-HHHHHHHHHCC-CHHHHHHHHHHH
Confidence 33233222222455556667888888889988888877432 2222 27788888877 465555555544
No 493
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=97.57 E-value=3.7e-05 Score=80.97 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=26.7
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||.+++++.
T Consensus 30 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 59 (280)
T PRK13633 30 NLEVKKGEFLVILGRNGSGKSTIAKHMNAL 59 (280)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 566778888999999999999999999973
No 494
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.57 E-value=0.00011 Score=75.99 Aligned_cols=30 Identities=33% Similarity=0.515 Sum_probs=26.5
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++.+++.
T Consensus 25 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 25 NLEVREQEIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred eeEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 556778888999999999999999999973
No 495
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=97.57 E-value=0.00012 Score=80.69 Aligned_cols=102 Identities=27% Similarity=0.429 Sum_probs=68.0
Q ss_pred CCCCcccccc-cccHHHHHHHHHHHHHhcChhhhhccCCCCCceEEEEcCCCChHHHHHHHHHHhcC-------------
Q 005611 168 GSTGVKFSDV-AGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG------------- 233 (688)
Q Consensus 168 ~~~~v~f~dV-~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~La~alA~~~~------------- 233 (688)
..+.+.|.|| +|+++----.+.+ .+|+.+...+.++||.|+|||||.+.+.....
T Consensus 386 p~pvi~~~nv~F~y~~~~~iy~~l-----------~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~ 454 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNPMIYKKL-----------NFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNK 454 (614)
T ss_pred CCCeEEEeccccCCCCcchhhhhh-----------hcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccccc
Confidence 3567889998 8887543222222 67788888899999999999999999987431
Q ss_pred CCEEEee-----------------------CchhHHHHhhh----------------hhHHHHHHHHHHHhCCCeEEEEc
Q 005611 234 VPFYQMA-----------------------GSEFVEVLVGV----------------GSARIRDLFKRAKVNKPSVIFID 274 (688)
Q Consensus 234 ~~~~~v~-----------------------~~~~~~~~~g~----------------~~~~~r~~f~~A~~~~p~IL~LD 274 (688)
.+.+... ..+....++|. .+++-|.+|.++....|.+|+||
T Consensus 455 ~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLD 534 (614)
T KOG0927|consen 455 LPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLD 534 (614)
T ss_pred chhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEec
Confidence 1111110 01111122221 35567889999999999999999
Q ss_pred ccchhh
Q 005611 275 EIDALA 280 (688)
Q Consensus 275 EiD~l~ 280 (688)
|...-.
T Consensus 535 EPtnhL 540 (614)
T KOG0927|consen 535 EPTNHL 540 (614)
T ss_pred CCCcCC
Confidence 987633
No 496
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=97.56 E-value=0.00022 Score=76.25 Aligned_cols=31 Identities=35% Similarity=0.492 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHHhCCCeEEEEcccchhhhh
Q 005611 252 GSARIRDLFKRAKVNKPSVIFIDEIDALATR 282 (688)
Q Consensus 252 ~~~~~r~~f~~A~~~~p~IL~LDEiD~l~~~ 282 (688)
|++++|.++++|....|.+|++||-++.++.
T Consensus 429 GGQRQRIAIARAliLkP~~i~LDEPTSALD~ 459 (534)
T COG4172 429 GGQRQRIAIARALILKPELILLDEPTSALDR 459 (534)
T ss_pred cchhhHHHHHHHHhcCCcEEEecCCchHhhH
Confidence 7899999999999999999999999986654
No 497
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.56 E-value=7.7e-05 Score=78.71 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=26.7
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++++++.
T Consensus 26 s~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl 55 (283)
T PRK13636 26 NINIKKGEVTAILGGNGAGKSTLFQNLNGI 55 (283)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 556778888999999999999999999974
No 498
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.56 E-value=0.00025 Score=72.34 Aligned_cols=31 Identities=32% Similarity=0.453 Sum_probs=27.0
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 232 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~~ 232 (688)
++.++++..+.|.||+|+|||||++.+++..
T Consensus 6 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 6 NLSLKRGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4556788889999999999999999999854
No 499
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=97.56 E-value=4.3e-05 Score=77.41 Aligned_cols=30 Identities=40% Similarity=0.664 Sum_probs=26.4
Q ss_pred ccCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005611 202 KMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 231 (688)
Q Consensus 202 ~~g~~~~~gvLL~GppGtGKT~La~alA~~ 231 (688)
++.+.++..+.|.||+|+|||||++.|++.
T Consensus 25 s~~i~~G~~~~I~G~nGsGKStLl~~l~G~ 54 (220)
T TIGR02982 25 NLEINPGEIVILTGPSGSGKTTLLTLIGGL 54 (220)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 555677888999999999999999999974
No 500
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.56 E-value=0.00015 Score=78.81 Aligned_cols=29 Identities=31% Similarity=0.425 Sum_probs=25.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 005611 205 IKPPHGVLLEGPPGCGKTLVAKAIAGEAG 233 (688)
Q Consensus 205 ~~~~~gvLL~GppGtGKT~La~alA~~~~ 233 (688)
+..+..++|+||||+|||++++.+++...
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 45666799999999999999999999753
Done!