Query 005611
Match_columns 688
No_of_seqs 461 out of 3852
Neff 7.5
Searched_HMMs 29240
Date Tue Mar 26 18:13:34 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005611.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2116-2120//hhsearch_pdb/005611hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ce7_A Cell division protein F 1.0 1 1 622.7 41.2 442 169-645 10-458 (476)
2 2dhr_A FTSH; AAA+ protein, hex 1.0 1 1 610.4 42.9 476 155-669 12-492 (499)
3 4b4t_J 26S protease regulatory 1.0 1 1 397.7 24.9 254 166-427 139-393 (405)
4 4b4t_I 26S protease regulatory 1.0 1 1 389.5 24.9 254 166-427 173-427 (437)
5 4b4t_H 26S protease regulatory 1.0 1 1 389.1 24.4 255 167-429 201-456 (467)
6 4b4t_M 26S protease regulatory 1.0 1 1 386.1 25.7 252 167-426 173-425 (434)
7 4b4t_L 26S protease subunit RP 1.0 1 1 385.3 25.6 252 167-426 173-425 (437)
8 4b4t_K 26S protease regulatory 1.0 1 1 378.4 25.3 251 167-425 164-416 (428)
9 3cf2_A TER ATPase, transitiona 1.0 1 1 363.5 7.8 249 168-427 197-463 (806)
10 3cf2_A TER ATPase, transitiona 1.0 1 1 346.7 21.5 233 167-407 469-702 (806)
No 1
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=1.00 E-value=1 Score=622.66 Aligned_cols=442 Identities=42% Similarity=0.745 Sum_probs=403.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHH
Q ss_conf 98720363326679999999999992390112004998995589985899808999999999409988996070358998
Q 005611 169 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVL 248 (688)
Q Consensus 169 ~~~i~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~giLL~GppGtGKTtLakala~~~~~~~~~i~~~~~~~~~ 248 (688)
.+.++|+||+|++++++++++++.++.++..|.+++.++|++++|+||||||||+++++++++++.+|+.++++++.+.+
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCCHHHHCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHH
T ss_conf 89999888188499999999999984072877643788897389988999888999999999819986607899999997
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 64325799999999983899399982521465310287567501232231189999999999984288799818999833
Q 005611 249 VGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAAT 328 (688)
Q Consensus 249 ~g~~~~~~r~~f~~A~~~~p~IL~LDEid~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~viVIaaT 328 (688)
.|.+.++++..|.+|+...||||||||+|.+...++....+ ...+...++++++.+++++..+.+++||++|
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g--------~~~~~~~~l~~LL~~ld~~~~~~~viVIaaT 161 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGG--------GHDEREQTLNQLLVEMDGFDSKEGIIVMAAT 161 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-----------------CHHHHHHHHHHHHHHHSCGGGTEEEEEEE
T ss_pred HCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHCCCCCCC--------CCHHHHHHHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf 34108899999999984599789985666542100466676--------7688999999999997533788888999956
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 88886882236988643012026899566999999996027678855778898619999799999999999999998299
Q 005611 329 NRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGH 408 (688)
Q Consensus 329 N~~~~Ld~aL~r~gRfd~~I~i~~P~~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~g~s~~dL~~lv~~A~~~A~~~~~ 408 (688)
|+++.+|++++|||||++.+.+++|+.++|.+|++.++++.++..++++..++..++|++|+||.++|++|+..|.+++.
T Consensus 162 n~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~ 241 (476)
T 2ce7_A 162 NRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGR 241 (476)
T ss_dssp SCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHCHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 87566363312267530686158999899999999999727886055499998755798399999999999999997489
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECC-CCCCEEEEECC
Q ss_conf 65468789999976315987667213577621578999999999977420223324433203452156-66730578317
Q 005611 409 ESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRG-QTLSQLVFHRL 487 (688)
Q Consensus 409 ~~I~~~di~~Ai~~~~~g~~~~~~~~~~~~~~~ia~hEaGhAvv~~ll~~~~~~~~~~i~kvsI~prg-~~lg~~~~~~~ 487 (688)
..|+.+|+..|++++..++.++...+++.+++.+++||+|||++++.+++. +++.+++|.||| +++|++++.|.
T Consensus 242 ~~I~~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~a~~~~~l~~~-----~~~~~~~i~prg~~alg~~~~~p~ 316 (476)
T 2ce7_A 242 DKITMKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNG-----EPVHRISIIPRGYKALGYTLHLPE 316 (476)
T ss_dssp SSBCHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHSTTC-----CCCCEEECC---------------
T ss_pred CEECHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCC-----CCCCEEEEECCCCCCCCEEEECCC
T ss_conf 823399999999998557443430321001046379986247876314776-----543504660574200412787673
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC--CC
Q ss_conf 7743224878899999999962999999984886678785129999999999999924896343357777544544--33
Q 005611 488 DDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRASVNYLADASWLARKILTIWNLENPMVIHGEPPPWRKKV--KF 565 (688)
Q Consensus 488 ~~~~~~~~t~~~l~~~i~v~LaGraAEe~~~G~~stg~~~~Dl~~At~lA~~~v~~~Gm~~~~~~~gg~~~~~~~~--~~ 565 (688)
++.+.++ +.+++++|+++|||||||+++||++|||+++ ||++||++|+.||+.|||++++ |+++|.... .|
T Consensus 317 -~~~~~~~-~~~l~~~i~~~l~Gr~ae~~~~g~~~~ga~~-Dl~~at~~a~~mv~~~gm~~~~----g~~~~~~~~~~~~ 389 (476)
T 2ce7_A 317 -EDKYLVS-RNELLDKLTALLGGRAAEEVVFGDVTSGAAN-DIERATEIARNMVCQLGMSEEL----GPLAWGKEEQEVF 389 (476)
T ss_dssp ---CCSCB-HHHHHHHHHHHTHHHHHHHHHHSSCCGGGHH-HHHHHHHHHHHHHHTSCCCTTT----CSCCCCC------
T ss_pred -CCCCCCC-HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH-HHHHHHHHHHHHHHHHCCCCCC----CCEEECCCCCCCC
T ss_conf -1123267-9999999999875899996023797745078-9999999999999984888768----8513147776544
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 588766578765788999999889883999----9999999999999999999991999999999999925569999999
Q 005611 566 VGPRLDFEGSLYDDYGLTEPPVNFNLDDDI----AWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLLNQKEIGREEIDF 641 (688)
Q Consensus 566 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~ll~~~~~~a~~lL~~~r~~l~~la~~Lle~e~l~~eei~~ 641 (688)
+|++.. ....+|+.+ +++|+++|+++|++|+++|++||+.|+++|++|+++|+|+++|+++
T Consensus 390 ~~~~~~---------------~~~~~s~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~ 454 (476)
T 2ce7_A 390 LGKEIT---------------RLRNYSEEVASKIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRR 454 (476)
T ss_dssp ----------------------CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHH
T ss_pred CCCCCC---------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHH
T ss_conf 565433---------------45665677899999999999999999999999996999999999999749058999999
Q ss_pred HHHC
Q ss_conf 7804
Q 005611 642 ILNN 645 (688)
Q Consensus 642 il~~ 645 (688)
|+++
T Consensus 455 ~~~~ 458 (476)
T 2ce7_A 455 ILSE 458 (476)
T ss_dssp HTC-
T ss_pred HHCC
T ss_conf 9645
No 2
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=1.00 E-value=1 Score=610.40 Aligned_cols=476 Identities=40% Similarity=0.689 Sum_probs=421.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 44333322213369987203633266799999999999923901120049989955899858998089999999994099
Q 005611 155 IDFSRSKAEARVDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV 234 (688)
Q Consensus 155 ~~~~~~~~~~~~~~~~~i~f~dV~G~~~~k~~L~~ii~~l~~~~~~~~~g~~~~~giLL~GppGtGKTtLakala~~~~~ 234 (688)
..+++++.+..... +.++|+||+|+++++.++++++.++.++..+.+++.++++|++|+||||||||+++++++++++.
T Consensus 12 ~~~~~~~~~~~~~~-~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~ 90 (499)
T 2dhr_A 12 FSFTKSRARVLTEA-PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV 90 (499)
T ss_dssp ------CCEEECSC-CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEECCC-CCCCHHHCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 77566764363269-99999981883999999999999830606554146878863899899998899999999887489
Q ss_pred CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 88996070358998643257999999999838993999825214653102875675012322311899999999999842
Q 005611 235 PFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD 314 (688)
Q Consensus 235 ~~~~i~~~~~~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEid~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld 314 (688)
+++.++++++.+.+.|.+..+++..|..+....|+|+||||+|.+...++..... ...+...++++++.+++
T Consensus 91 ~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~--------~~~e~~~~l~~LL~~Ld 162 (499)
T 2dhr_A 91 PFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGG--------GNDEREQTLNQLLVEMD 162 (499)
T ss_dssp CEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTT--------SSHHHHHHHHHHHHHGG
T ss_pred CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHCCCCCC--------CCHHHHHHHHHHHHHHC
T ss_conf 8799833687776421589999999999871599889974298898742467678--------74899999999998741
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHH
Q ss_conf 88799818999833888868822369886430120268995669999999960276788557788986199997999999
Q 005611 315 GFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQ 394 (688)
Q Consensus 315 ~~~~~~~viVIaaTN~~~~Ld~aL~r~gRfd~~I~i~~P~~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~g~s~~dL~~ 394 (688)
+...+..+++|++||+|+.+|++++||+||++.+++++|+.++|.+|++.++++..+..+.++..++..++|++|+||++
T Consensus 163 g~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~ 242 (499)
T 2dhr_A 163 GFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLEN 242 (499)
T ss_dssp GCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHH
T ss_pred CCCCCCCEEEEEECCCHHHCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 46667618999956884543831255661456985289999999999999982699976888999998638997999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
Q ss_conf 99999999998299654687899999763159876672135776215789999999999774202233244332034521
Q 005611 395 LVQEAALVAVRKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVP 474 (688)
Q Consensus 395 lv~~A~~~A~~~~~~~I~~~di~~Ai~~~~~g~~~~~~~~~~~~~~~ia~hEaGhAvv~~ll~~~~~~~~~~i~kvsI~p 474 (688)
+|++|+..|.++++..|+.+|+.+|++++..+.+++...+++.+++.+++||+|||++++++++. ++++++||.|
T Consensus 243 lv~~Aa~~A~~~~~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~~~l~~~-----~~v~~~~i~p 317 (499)
T 2dhr_A 243 LLNEAALLAAREGRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHA-----DGVHKVTIVP 317 (499)
T ss_dssp HHHHHHHHHTTTCCSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHHCCSSSC-----CCCCCEESCC
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC-----CEEEEEEEEC
T ss_conf 99999999998289865799999999987236443321124777762189999899998665788-----7066787404
Q ss_pred CCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 56667305783177743224878899999999962999999984886678785129999999999999924896343357
Q 005611 475 RGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRASVNYLADASWLARKILTIWNLENPMVIHG 554 (688)
Q Consensus 475 rg~~lg~~~~~~~~~~~~~~~t~~~l~~~i~v~LaGraAEe~~~G~~stg~~~~Dl~~At~lA~~~v~~~Gm~~~~~~~g 554 (688)
||+++|+++ |..++.++++ +.+++++|+++||||+||+++||++|||+++ ||++||++|+.||+.|||++++
T Consensus 318 r~~~~g~~~--p~q~~~~~~t-~~~l~~~i~~~lgGr~ae~~~~g~~~~ga~~-Dl~~at~~a~~mv~~~gm~~~~---- 389 (499)
T 2dhr_A 318 RGRALGFMM--PRREDMLHWS-RKRLLDQIAVALAGRAAEEIVFDDVTTGAEN-DFRQATELARRMITEWGMHPEF---- 389 (499)
T ss_dssp SSCTTCSSH--HHHTTCCCCC-HHHHHHHHHHHHHHHHHHHHHSCSCCBCCCH-HHHHHHHHHHHHHTTSCCCSSS----
T ss_pred CCCCCCCCC--CCHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH-HHHHHHHHHHHHHHHHCCCCCC----
T ss_conf 777676003--4146543048-9999999999964376778630356766087-9999999999999983888878----
Q ss_pred CCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 777544544-33588766578765788999999889883999----9999999999999999999991999999999999
Q 005611 555 EPPPWRKKV-KFVGPRLDFEGSLYDDYGLTEPPVNFNLDDDI----AWRTEELLRDMYGRTVTLLRRHHAALLKTVKVLL 629 (688)
Q Consensus 555 g~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~ll~~~~~~a~~lL~~~r~~l~~la~~Ll 629 (688)
|+++|.... .|+| +. ....+|+.+ +++|+++|+++|++|+++|++||+.|+++|++|+
T Consensus 390 g~~~~~~~~~~~~~-~~----------------~~~~~s~~~~~~i~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~ 452 (499)
T 2dhr_A 390 GPVAYAVREDTYLG-GY----------------DVRQYSEETAKRIDEAVRRLIEEQYQRVKALLLEKREVLERVAETLL 452 (499)
T ss_dssp CSCCCCCCCCCSSC-CC----------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred CCEEECCCCCCCCC-CC----------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 84353577764334-43----------------43445899999999999999999999999999997999999999999
Q ss_pred HHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 9255699999997804999998743433369999997714
Q 005611 630 NQKEIGREEIDFILNNYPPQTPISRLLEEENPGTLPFIKQ 669 (688)
Q Consensus 630 e~e~l~~eei~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (688)
++|+|+++|+++|++..++..|.....+.++++++|...+
T Consensus 453 ~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (499)
T 2dhr_A 453 ERETLTAEEFQRVVEGLPLEAPEEAREEREPPRVVPKVKP 492 (499)
T ss_dssp HHSEECHHHHHHHHTTCCCCCCC-----------------
T ss_pred HHCEECHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCC
T ss_conf 7485679999999663889983023431379876787699
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=397.69 Aligned_cols=254 Identities=38% Similarity=0.682 Sum_probs=238.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf 3699872036332667999999999999-239011200499899558998589980899999999940998899607035
Q 005611 166 VDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 244 (688)
Q Consensus 166 ~~~~~~i~f~dV~G~~~~k~~L~~ii~~-l~~~~~~~~~g~~~~~giLL~GppGtGKTtLakala~~~~~~~~~i~~~~~ 244 (688)
....++++|+||+|++++|++|++.+.+ +++|+.|..+|+++|+|+|||||||||||++|+++|++++++|+.++++++
T Consensus 139 ~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l 218 (405)
T 4b4t_J 139 VEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAEL 218 (405)
T ss_dssp EECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred CCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEHHHH
T ss_conf 55799998888288899999999999998749999986799988825885899998789999999851888528886895
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 89986432579999999998389939998252146531028756750123223118999999999998428879981899
Q 005611 245 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF 324 (688)
Q Consensus 245 ~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEid~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~viV 324 (688)
.++|+|+++..+|.+|..|+..+||||||||+|+++.++.....+ .+.+...+++++|.+||++....+|+|
T Consensus 219 ~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~--------~~~~~~~~l~~lL~~lDg~~~~~~V~v 290 (405)
T 4b4t_J 219 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGG--------GDSEVQRTMLELLNQLDGFETSKNIKI 290 (405)
T ss_dssp SCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSG--------GGGHHHHHHHHHHHHHHTTTCCCCEEE
T ss_pred HCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCC--------CCHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 113354689999999999987099467653341111577888999--------768999999999996043388887578
Q ss_pred EEECCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 98338888688223698864301202689956699999999602767885577889861999979999999999999999
Q 005611 325 LAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAV 404 (688)
Q Consensus 325 IaaTN~~~~Ld~aL~r~gRfd~~I~i~~P~~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~g~s~~dL~~lv~~A~~~A~ 404 (688)
|+|||+|+.+||+++||||||++|++++|+.++|.+||+.++++.++..++|+..+|..|.||||+||.++|++|+..|.
T Consensus 291 IaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Ai 370 (405)
T 4b4t_J 291 IMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYAL 370 (405)
T ss_dssp EEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 81269814489967287767669976996999999999998559999965799999987799999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 82996546878999997631598
Q 005611 405 RKGHESILSSDMDDAVDRLTVGP 427 (688)
Q Consensus 405 ~~~~~~I~~~di~~Ai~~~~~g~ 427 (688)
++++..|+++||..|+.++....
T Consensus 371 r~~~~~vt~~Df~~Al~~v~~~~ 393 (405)
T 4b4t_J 371 RERRIHVTQEDFELAVGKVMNKN 393 (405)
T ss_dssp HTTCSBCCHHHHHHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 86998759999999999985726
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=389.47 Aligned_cols=254 Identities=39% Similarity=0.684 Sum_probs=238.5
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf 3699872036332667999999999999-239011200499899558998589980899999999940998899607035
Q 005611 166 VDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 244 (688)
Q Consensus 166 ~~~~~~i~f~dV~G~~~~k~~L~~ii~~-l~~~~~~~~~g~~~~~giLL~GppGtGKTtLakala~~~~~~~~~i~~~~~ 244 (688)
....++++|+||+|++++|++|++.+.+ +++|+.|..+|+++|+|+|||||||||||++|+++|++++.+|+.++++++
T Consensus 173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l 252 (437)
T 4b4t_I 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSEL 252 (437)
T ss_dssp EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGG
T ss_pred ECCCCCCCCEECCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCEEEEEHHHH
T ss_conf 33689986005576999999999999998769999986799977788448899963999999999985998799887995
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 89986432579999999998389939998252146531028756750123223118999999999998428879981899
Q 005611 245 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF 324 (688)
Q Consensus 245 ~~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEid~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~viV 324 (688)
.++|+|++++.+|.+|..|+..+||||||||+|+++..|...... .+.+...+++++|.++|++....+++|
T Consensus 253 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~--------~~~~~~~~l~~LL~~lDg~~~~~~ViV 324 (437)
T 4b4t_I 253 IQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSG--------GEREIQRTMLELLNQLDGFDDRGDVKV 324 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCS--------SCCHHHHHHHHHHHHHHHCCCSSSEEE
T ss_pred HHCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCC--------CCHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 314476699999999999986599189876122203667788877--------658999999999997247678899799
Q ss_pred EEECCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 98338888688223698864301202689956699999999602767885577889861999979999999999999999
Q 005611 325 LAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAV 404 (688)
Q Consensus 325 IaaTN~~~~Ld~aL~r~gRfd~~I~i~~P~~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~g~s~~dL~~lv~~A~~~A~ 404 (688)
|+|||+|+.|||+++||||||++|+|++|+.++|.+||+.++++.++..++|+..+|..|.||||+||.++|++|+..|.
T Consensus 325 IaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Ai 404 (437)
T 4b4t_I 325 IMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLAL 404 (437)
T ss_dssp EEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCHHHCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99579805559988648860279980896999999999999648999976799999976799989999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 82996546878999997631598
Q 005611 405 RKGHESILSSDMDDAVDRLTVGP 427 (688)
Q Consensus 405 ~~~~~~I~~~di~~Ai~~~~~g~ 427 (688)
++++..|+++||..|++++..+.
T Consensus 405 r~~~~~It~eDf~~Al~rv~~~~ 427 (437)
T 4b4t_I 405 RERRMQVTAEDFKQAKERVMKNK 427 (437)
T ss_dssp HTTCSCBCHHHHHHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 84899669999999999870798
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=389.14 Aligned_cols=255 Identities=38% Similarity=0.663 Sum_probs=239.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf 699872036332667999999999999-2390112004998995589985899808999999999409988996070358
Q 005611 167 DGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 245 (688)
Q Consensus 167 ~~~~~i~f~dV~G~~~~k~~L~~ii~~-l~~~~~~~~~g~~~~~giLL~GppGtGKTtLakala~~~~~~~~~i~~~~~~ 245 (688)
+..++++|+||+|++++|++|++.+.+ +.+|+.|..+|+++|+|+|||||||||||++|+++|++++++|+.++++++.
T Consensus 201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~ 280 (467)
T 4b4t_H 201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELV 280 (467)
T ss_dssp ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEHHHHH
T ss_conf 57999987885459999999999999884299999877999998147648999809999999984468986998869950
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 99864325799999999983899399982521465310287567501232231189999999999984288799818999
Q 005611 246 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 325 (688)
Q Consensus 246 ~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEid~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~viVI 325 (688)
++|+|++++.+|.+|..|+..+||||||||+|+++.+|.....+ .......+++++|.+||++....+|+||
T Consensus 281 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~--------~~~~~~~~l~~lL~~lDg~~~~~~ViVI 352 (467)
T 4b4t_H 281 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAG--------GDNEVQRTMLELITQLDGFDPRGNIKVM 352 (467)
T ss_dssp CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCG--------GGGHHHHHHHHHHHHHHSSCCTTTEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCC--------CCHHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 26677899999999999876178467522321101355676778--------6278999999999986555788837988
Q ss_pred EECCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 83388886882236988643012026899566999999996027678855778898619999799999999999999998
Q 005611 326 AATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVR 405 (688)
Q Consensus 326 aaTN~~~~Ld~aL~r~gRfd~~I~i~~P~~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~g~s~~dL~~lv~~A~~~A~~ 405 (688)
+|||+|+.|||+++||||||++|+|++|+.++|.+||+.++++.++..++++..+|+.|.||||+||.++|++|+..|.+
T Consensus 353 aATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air 432 (467)
T 4b4t_H 353 FATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIR 432 (467)
T ss_dssp EECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 28789311795463666550799838969999999999985489998777999999777999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 299654687899999763159876
Q 005611 406 KGHESILSSDMDDAVDRLTVGPKR 429 (688)
Q Consensus 406 ~~~~~I~~~di~~Ai~~~~~g~~~ 429 (688)
+++..|+.+||..|++++..+.++
T Consensus 433 ~~~~~it~~Df~~Al~kV~~g~~k 456 (467)
T 4b4t_H 433 ARRKVATEKDFLKAVDKVISGYKK 456 (467)
T ss_dssp HTCSSBCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 388766999999999999647456
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=386.14 Aligned_cols=252 Identities=39% Similarity=0.682 Sum_probs=236.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf 699872036332667999999999999-2390112004998995589985899808999999999409988996070358
Q 005611 167 DGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 245 (688)
Q Consensus 167 ~~~~~i~f~dV~G~~~~k~~L~~ii~~-l~~~~~~~~~g~~~~~giLL~GppGtGKTtLakala~~~~~~~~~i~~~~~~ 245 (688)
...++++|+||+|++++|++|++.+.+ +++|+.|..+|+++|+|+|||||||||||++|+++|++++++|+.++++++.
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHH
T ss_conf 88979986760957999999999999997499999867999887268779499988999999999959988998644643
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 99864325799999999983899399982521465310287567501232231189999999999984288799818999
Q 005611 246 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 325 (688)
Q Consensus 246 ~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEid~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~viVI 325 (688)
++|+|++++.+|.+|..|+..+||||||||+|+++.+|...... ...+...+++++|..||++....+|+||
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~--------~~~~~~~~~~~lL~~ldg~~~~~~ViVI 324 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKS--------GDREVQRTMLELLNQLDGFSSDDRVKVL 324 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGG--------TTHHHHHHHHHHHHHHTTSCSSCSSEEE
T ss_pred HCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCCC--------CCHHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 13456389999999999986199089603325665225778888--------7469999999999971366888998999
Q ss_pred EECCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 83388886882236988643012026899566999999996027678855778898619999799999999999999998
Q 005611 326 AATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVR 405 (688)
Q Consensus 326 aaTN~~~~Ld~aL~r~gRfd~~I~i~~P~~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~g~s~~dL~~lv~~A~~~A~~ 405 (688)
+|||+|+.+||+++||||||++|++++|+.++|.+||+.++++.+...++++..+|+.|.||||+||.++|++|+..|.+
T Consensus 325 aaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r 404 (434)
T 4b4t_M 325 AATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALR 404 (434)
T ss_dssp EECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHCCHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 94899223399671577403899808959999999999985689998767999999868998999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHCCC
Q ss_conf 299654687899999763159
Q 005611 406 KGHESILSSDMDDAVDRLTVG 426 (688)
Q Consensus 406 ~~~~~I~~~di~~Ai~~~~~g 426 (688)
+++..|+.+||..|+.++...
T Consensus 405 ~~~~~i~~~Df~~Al~~v~~~ 425 (434)
T 4b4t_M 405 NGQSSVKHEDFVEGISEVQAR 425 (434)
T ss_dssp HTCSSBCHHHHHHHHHSCSSS
T ss_pred CCCCCCCHHHHHHHHHHHHCC
T ss_conf 699876999999999997377
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=385.30 Aligned_cols=252 Identities=42% Similarity=0.687 Sum_probs=237.0
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf 699872036332667999999999999-2390112004998995589985899808999999999409988996070358
Q 005611 167 DGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 245 (688)
Q Consensus 167 ~~~~~i~f~dV~G~~~~k~~L~~ii~~-l~~~~~~~~~g~~~~~giLL~GppGtGKTtLakala~~~~~~~~~i~~~~~~ 245 (688)
...++++|+||+|+++++++|++.+.+ +++|+.|..+|+++|+|+|||||||||||++|+++|++++++|+.++++++.
T Consensus 173 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~ 252 (437)
T 4b4t_L 173 FEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIV 252 (437)
T ss_dssp EESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred CCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHC
T ss_conf 15999896671785999999999999987499999867989787699989999849999999999859998998414620
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 99864325799999999983899399982521465310287567501232231189999999999984288799818999
Q 005611 246 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 325 (688)
Q Consensus 246 ~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEid~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~viVI 325 (688)
++|+|++...++..|..|+...||||||||+|+++.+|...... .+.+...+++++|.+||++....+++||
T Consensus 253 sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~--------~~~~~~~~l~~lL~~lDg~~~~~~vivI 324 (437)
T 4b4t_L 253 DKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTS--------ADREIQRTLMELLTQMDGFDNLGQTKII 324 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCS--------STTHHHHHHHHHHHHHHSSSCTTSSEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC--------CCHHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 55201789999999999986389646420443333333447887--------5368999999999983466677986999
Q ss_pred EECCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 83388886882236988643012026899566999999996027678855778898619999799999999999999998
Q 005611 326 AATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVR 405 (688)
Q Consensus 326 aaTN~~~~Ld~aL~r~gRfd~~I~i~~P~~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~g~s~~dL~~lv~~A~~~A~~ 405 (688)
+|||+|+.+||+++||||||++|+|++|+.++|.+||+.++++.+...++|+..+|..|.||||+||.++|++|+..|.+
T Consensus 325 ~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air 404 (437)
T 4b4t_L 325 MATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIR 404 (437)
T ss_dssp EEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 93399033189782777102001359969999999999986589998645899999768999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHCCC
Q ss_conf 299654687899999763159
Q 005611 406 KGHESILSSDMDDAVDRLTVG 426 (688)
Q Consensus 406 ~~~~~I~~~di~~Ai~~~~~g 426 (688)
+++..|+.+||..|+.++...
T Consensus 405 ~~~~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 405 DDRDHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp TTCSSBCHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHC
T ss_conf 699877999999999998750
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=378.39 Aligned_cols=251 Identities=41% Similarity=0.675 Sum_probs=235.3
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf 699872036332667999999999999-2390112004998995589985899808999999999409988996070358
Q 005611 167 DGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 245 (688)
Q Consensus 167 ~~~~~i~f~dV~G~~~~k~~L~~ii~~-l~~~~~~~~~g~~~~~giLL~GppGtGKTtLakala~~~~~~~~~i~~~~~~ 245 (688)
...++++|+||+|++++|++|++.+.+ +++|+.|..+|+++|+|+|||||||||||++|+++|++++++|+.++++++.
T Consensus 164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFV 243 (428)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred CCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCHHH
T ss_conf 78999988885169999999999999987399999867999886588889899888999999999867996999330443
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 99864325799999999983899399982521465310287567501232231189999999999984288799818999
Q 005611 246 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 325 (688)
Q Consensus 246 ~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEid~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~viVI 325 (688)
++|+|+++..+|.+|..|+..+|||+||||+|+++..|...... .+.+...+++++|.+||++....+++||
T Consensus 244 ~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~--------~~~~~~r~l~~lL~~ldg~~~~~~v~vI 315 (428)
T 4b4t_K 244 HKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTG--------SDREVQRILIELLTQMDGFDQSTNVKVI 315 (428)
T ss_dssp CSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSC--------CCCHHHHHHHHHHHHHHHSCSSCSEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHCCCCCCCCC--------CCHHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 14546059999999999997399746300224330355678788--------8718999999999984387877997999
Q ss_pred EECCCCCCCCCCCCCCCCCCEEEECC-CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 83388886882236988643012026-89956699999999602767885577889861999979999999999999999
Q 005611 326 AATNRRDLLDPALLRPGRFDRKIRIR-APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAV 404 (688)
Q Consensus 326 aaTN~~~~Ld~aL~r~gRfd~~I~i~-~P~~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~g~s~~dL~~lv~~A~~~A~ 404 (688)
+|||+|+.+||+++||||||+.|++| +|+.++|..||+.++++.+...++|+..+|..|.||||+||.++|++|+..|.
T Consensus 316 ~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~ 395 (428)
T 4b4t_K 316 MATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAV 395 (428)
T ss_dssp EEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred EECCCHHHCCHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 96198155696663687515999819999999999999998557999963589999977799889999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHCC
Q ss_conf 829965468789999976315
Q 005611 405 RKGHESILSSDMDDAVDRLTV 425 (688)
Q Consensus 405 ~~~~~~I~~~di~~Ai~~~~~ 425 (688)
++++..|+++|+..|+.+...
T Consensus 396 r~~~~~i~~~d~~~A~~~~~~ 416 (428)
T 4b4t_K 396 RKNRYVILQSDLEEAYATQVK 416 (428)
T ss_dssp HTTCSSBCHHHHHHHHHHHSC
T ss_pred HCCCCCCCHHHHHHHHHHHHC
T ss_conf 879987799999999997617
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=363.52 Aligned_cols=249 Identities=41% Similarity=0.694 Sum_probs=229.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHH-HCCHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHH
Q ss_conf 99872036332667999999999999-23901120049989955899858998089999999994099889960703589
Q 005611 168 GSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 246 (688)
Q Consensus 168 ~~~~i~f~dV~G~~~~k~~L~~ii~~-l~~~~~~~~~g~~~~~giLL~GppGtGKTtLakala~~~~~~~~~i~~~~~~~ 246 (688)
..++++|+||+|+++++++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+++|++++.+++.++++++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEHHHHHC
T ss_conf 58999903514999999999999998751989886358999975897798999889999999997198399997379543
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 98643257999999999838993999825214653102875675012322311899999999999842887998189998
Q 005611 247 VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLA 326 (688)
Q Consensus 247 ~~~g~~~~~~r~~f~~A~~~~p~IL~LDEid~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~viVIa 326 (688)
++.|+++.++|.+|..|+...||||||||+|++++++++... .....++++++..||++..+.+|+||+
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~-----------~~~~riv~~LL~~mdg~~~~~~V~VIa 345 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG-----------EVERRIVSQLLTLMDGLKQRAHVIVMA 345 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCC-----------TTHHHHHHHHHTHHHHCCGGGCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCCCCC-----------HHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 331678999999999999729929998510023344577887-----------399999999999974666669879999
Q ss_pred ECCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 33888868822369886430120268995669999999960276788557788986199997999999999999999982
Q 005611 327 ATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRK 406 (688)
Q Consensus 327 aTN~~~~Ld~aL~r~gRfd~~I~i~~P~~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~g~s~~dL~~lv~~A~~~A~~~ 406 (688)
+||+++.+|++++|||||+++|++++|+.++|.+||+.++++.....++++..+|..|.||+|+||.++|++|+..|.++
T Consensus 346 aTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r 425 (806)
T 3cf2_A 346 ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK 425 (806)
T ss_dssp ECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred ECCCHHHCCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 66980326988857863616886689798999999999856899886438999997568998999999999999999984
Q ss_pred CC-----------------CCCCHHHHHHHHHHHCCCC
Q ss_conf 99-----------------6546878999997631598
Q 005611 407 GH-----------------ESILSSDMDDAVDRLTVGP 427 (688)
Q Consensus 407 ~~-----------------~~I~~~di~~Ai~~~~~g~ 427 (688)
.. ..++.+|+..|+.......
T Consensus 426 ~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~ 463 (806)
T 3cf2_A 426 KMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSA 463 (806)
T ss_dssp HHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCC
T ss_pred CCCCCCCCCCCCCHHHHCCCEEEHHHHHHHHHHCCCCC
T ss_conf 14512000133204552255651999999997287831
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=346.66 Aligned_cols=233 Identities=41% Similarity=0.734 Sum_probs=216.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf 699872036332667999999999999-2390112004998995589985899808999999999409988996070358
Q 005611 167 DGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 245 (688)
Q Consensus 167 ~~~~~i~f~dV~G~~~~k~~L~~ii~~-l~~~~~~~~~g~~~~~giLL~GppGtGKTtLakala~~~~~~~~~i~~~~~~ 245 (688)
...+.++|+|+.|++++|++|++.+.+ +++|+.|.++|.++++|+|||||||||||++|+++|.+++.+|+.++++++.
T Consensus 469 ~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~ 548 (806)
T 3cf2_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHH
T ss_pred CCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCHHH
T ss_conf 45788788881788999999999997566689999714888886079866877896399999999838966874241121
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 99864325799999999983899399982521465310287567501232231189999999999984288799818999
Q 005611 246 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 325 (688)
Q Consensus 246 ~~~~g~~~~~~r~~f~~A~~~~p~IL~LDEid~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~viVI 325 (688)
++|+|++++.+|.+|..|+...||||||||+|+++.+|+....+ ......+++++||.+||++....+|+||
T Consensus 549 s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~--------~~~~~~rv~~~lL~~mdg~~~~~~V~vi 620 (806)
T 3cf2_A 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD--------GGGAADRVINQILTEMDGMSTKKNVFII 620 (806)
T ss_dssp TTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC----------------------CHHHHHHHHHHHSSCSSSSEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHCCCCCCCC--------CCHHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 03343689999999999997299635204256776315888889--------8669999999999997487877998999
Q ss_pred EECCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 83388886882236988643012026899566999999996027678855778898619999799999999999999998
Q 005611 326 AATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVR 405 (688)
Q Consensus 326 aaTN~~~~Ld~aL~r~gRfd~~I~i~~P~~~eR~~Il~~~l~~~~~~~~~dl~~la~~t~g~s~~dL~~lv~~A~~~A~~ 405 (688)
+|||+|+.||++++|||||++.|++++|+.++|.+||+.++++.++..++|+..+|+.|.||||+||.++|++|+..|.+
T Consensus 621 ~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r 700 (806)
T 3cf2_A 621 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIR 700 (806)
T ss_dssp CC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHH
T ss_pred EECCCCHHCCHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 93798043898471778550799979969999999999985679998778999999768999999999999999999999
Q ss_pred HC
Q ss_conf 29
Q 005611 406 KG 407 (688)
Q Consensus 406 ~~ 407 (688)
+.
T Consensus 701 ~~ 702 (806)
T 3cf2_A 701 ES 702 (806)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
Done!