Query 005614
Match_columns 688
No_of_seqs 398 out of 1508
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 02:12:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005614.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005614hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1474 Transcription initiati 100.0 7.4E-43 1.6E-47 402.0 25.6 536 39-688 24-608 (640)
2 cd05496 Bromo_WDR9_II Bromodom 99.9 3.3E-27 7.2E-32 218.6 12.1 106 203-310 4-110 (119)
3 cd05495 Bromo_cbp_like Bromodo 99.9 4.4E-27 9.5E-32 214.5 12.5 104 203-306 2-106 (108)
4 cd05497 Bromo_Brdt_I_like Brom 99.9 4.7E-27 1E-31 214.0 11.5 102 204-305 5-106 (107)
5 cd05505 Bromo_WSTF_like Bromod 99.9 1.7E-26 3.7E-31 206.8 10.5 95 206-302 2-96 (97)
6 cd05506 Bromo_plant1 Bromodoma 99.9 3.4E-26 7.4E-31 205.0 10.5 99 205-303 1-99 (99)
7 cd05503 Bromo_BAZ2A_B_like Bro 99.9 5.2E-26 1.1E-30 203.5 10.5 96 206-303 2-97 (97)
8 cd05498 Bromo_Brdt_II_like Bro 99.9 7.2E-26 1.6E-30 204.1 10.3 98 206-303 2-102 (102)
9 cd05504 Bromo_Acf1_like Bromod 99.9 1.6E-25 3.4E-30 206.4 12.6 102 203-306 11-112 (115)
10 cd05499 Bromo_BDF1_2_II Bromod 99.9 1.4E-25 3.1E-30 202.3 10.7 98 206-303 2-102 (102)
11 cd05507 Bromo_brd8_like Bromod 99.9 1.9E-25 4.2E-30 202.4 11.5 100 203-304 2-101 (104)
12 cd05500 Bromo_BDF1_2_I Bromodo 99.9 2.3E-25 4.9E-30 201.5 11.5 101 202-302 2-102 (103)
13 cd05502 Bromo_tif1_like Bromod 99.9 5.3E-25 1.1E-29 201.0 12.5 102 202-306 2-106 (109)
14 cd05501 Bromo_SP100C_like Brom 99.9 6.9E-25 1.5E-29 197.6 12.2 97 205-306 3-99 (102)
15 cd05510 Bromo_SPT7_like Bromod 99.9 7.5E-25 1.6E-29 201.0 11.5 102 203-306 6-109 (112)
16 cd05509 Bromo_gcn5_like Bromod 99.9 8E-25 1.7E-29 196.9 10.6 99 205-305 2-100 (101)
17 cd05508 Bromo_RACK7 Bromodomai 99.9 9.3E-25 2E-29 196.2 10.9 97 203-302 2-98 (99)
18 cd05516 Bromo_SNF2L2 Bromodoma 99.9 1.6E-24 3.5E-29 197.3 10.0 99 205-305 2-106 (107)
19 cd05513 Bromo_brd7_like Bromod 99.9 3.3E-24 7.1E-29 192.4 10.1 92 205-298 2-93 (98)
20 cd05512 Bromo_brd1_like Bromod 99.9 5.9E-24 1.3E-28 190.8 10.1 92 205-298 2-93 (98)
21 cd05528 Bromo_AAA Bromodomain; 99.9 9.6E-24 2.1E-28 193.7 11.5 102 203-306 2-107 (112)
22 cd05511 Bromo_TFIID Bromodomai 99.9 1.5E-23 3.2E-28 192.5 11.1 102 207-310 3-104 (112)
23 cd05519 Bromo_SNF2 Bromodomain 99.9 3.5E-23 7.6E-28 187.2 9.8 97 205-303 1-103 (103)
24 cd05515 Bromo_polybromo_V Brom 99.9 3.8E-23 8.3E-28 187.7 10.0 96 206-303 2-103 (105)
25 cd05524 Bromo_polybromo_I Brom 99.9 1.1E-22 2.5E-27 187.0 10.7 101 205-307 3-109 (113)
26 cd05529 Bromo_WDR9_I_like Brom 99.9 3E-22 6.6E-27 188.0 12.9 105 199-304 19-126 (128)
27 cd05517 Bromo_polybromo_II Bro 99.9 1.4E-22 3E-27 183.5 9.2 94 206-301 2-101 (103)
28 smart00297 BROMO bromo domain. 99.9 3.2E-22 6.8E-27 180.4 11.3 102 202-305 5-106 (107)
29 cd05525 Bromo_ASH1 Bromodomain 99.9 2.9E-22 6.4E-27 182.2 10.2 96 205-302 3-104 (106)
30 cd05520 Bromo_polybromo_III Br 99.9 2.7E-22 5.9E-27 181.6 9.8 91 210-302 6-102 (103)
31 cd05518 Bromo_polybromo_IV Bro 99.9 3.4E-22 7.4E-27 180.9 9.7 94 207-302 3-102 (103)
32 cd05522 Bromo_Rsc1_2_II Bromod 99.8 5.7E-21 1.2E-25 173.2 10.0 94 207-302 4-103 (104)
33 PF00439 Bromodomain: Bromodom 99.8 5.6E-21 1.2E-25 165.0 9.2 84 209-294 1-84 (84)
34 cd04369 Bromodomain Bromodomai 99.8 6.9E-21 1.5E-25 166.7 9.6 96 206-303 2-99 (99)
35 cd05521 Bromo_Rsc1_2_I Bromodo 99.8 1.5E-20 3.3E-25 171.0 10.5 95 205-303 2-102 (106)
36 cd05492 Bromo_ZMYND11 Bromodom 99.8 5.8E-20 1.3E-24 167.7 11.5 98 210-307 6-107 (109)
37 cd05526 Bromo_polybromo_VI Bro 99.7 2E-17 4.3E-22 151.0 10.6 100 204-307 3-108 (110)
38 COG5076 Transcription factor i 99.7 6.7E-17 1.4E-21 176.7 9.7 105 203-309 141-251 (371)
39 KOG1245 Chromatin remodeling c 99.7 5.2E-17 1.1E-21 199.2 7.8 95 209-306 1306-1400(1404)
40 KOG1472 Histone acetyltransfer 99.4 3.4E-13 7.4E-18 155.0 6.1 101 204-306 606-706 (720)
41 cd05494 Bromodomain_1 Bromodom 99.4 3.2E-13 7E-18 124.6 4.4 81 204-284 3-90 (114)
42 KOG0955 PHD finger protein BR1 99.1 1.2E-10 2.6E-15 139.3 8.4 103 202-306 563-665 (1051)
43 cd05491 Bromo_TBP7_like Bromod 98.9 9.3E-10 2E-14 101.5 4.1 41 245-285 63-103 (119)
44 KOG0386 Chromatin remodeling c 98.9 2E-09 4.3E-14 126.1 7.3 100 207-308 1027-1132(1157)
45 KOG1827 Chromatin remodeling c 98.8 1.3E-08 2.7E-13 116.2 8.2 100 202-303 50-155 (629)
46 KOG0008 Transcription initiati 98.8 8.2E-09 1.8E-13 123.5 6.3 92 210-303 1388-1479(1563)
47 KOG0008 Transcription initiati 98.6 5E-08 1.1E-12 116.9 7.0 102 205-308 1262-1363(1563)
48 KOG1474 Transcription initiati 98.6 1.8E-08 3.8E-13 117.8 1.7 91 215-305 3-93 (640)
49 KOG1472 Histone acetyltransfer 98.5 1.3E-07 2.8E-12 109.7 4.9 67 218-286 300-366 (720)
50 KOG1828 IRF-2-binding protein 97.9 2.3E-06 5E-11 92.3 -0.0 95 207-303 22-116 (418)
51 KOG1828 IRF-2-binding protein 97.9 3.7E-05 8.1E-10 83.2 8.2 83 212-297 216-298 (418)
52 COG5076 Transcription factor i 97.7 4E-06 8.6E-11 92.3 -1.7 190 34-305 172-362 (371)
53 KOG1029 Endocytic adaptor prot 96.6 0.0097 2.1E-07 69.4 10.0 70 611-687 329-408 (1118)
54 cd05493 Bromo_ALL-1 Bromodomai 95.4 0.027 6E-07 53.5 5.5 60 246-305 59-118 (131)
55 PF09726 Macoilin: Transmembra 95.2 0.64 1.4E-05 55.7 17.4 87 595-681 428-527 (697)
56 PTZ00266 NIMA-related protein 94.8 0.5 1.1E-05 58.7 15.2 17 283-299 221-237 (1021)
57 KOG0163 Myosin class VI heavy 94.7 0.097 2.1E-06 61.4 8.3 63 621-683 930-1001(1259)
58 KOG1029 Endocytic adaptor prot 93.8 0.24 5.2E-06 58.4 9.1 15 371-385 223-237 (1118)
59 PTZ00266 NIMA-related protein 93.3 0.31 6.7E-06 60.4 9.4 14 204-217 119-132 (1021)
60 cd05497 Bromo_Brdt_I_like Brom 92.2 0.022 4.7E-07 52.3 -1.8 55 38-97 36-90 (107)
61 PLN03086 PRLI-interacting fact 92.1 0.5 1.1E-05 55.0 8.6 20 644-663 24-43 (567)
62 KOG0163 Myosin class VI heavy 91.2 0.86 1.9E-05 53.9 9.1 38 622-659 919-960 (1259)
63 KOG3054 Uncharacterized conser 90.8 0.99 2.1E-05 47.1 8.1 19 666-684 159-177 (299)
64 cd05518 Bromo_polybromo_IV Bro 90.5 0.041 8.8E-07 50.2 -1.9 54 39-97 36-89 (103)
65 KOG1144 Translation initiation 90.3 1.3 2.8E-05 52.8 9.4 31 630-660 234-264 (1064)
66 KOG3054 Uncharacterized conser 89.2 1.7 3.8E-05 45.3 8.4 24 656-679 140-164 (299)
67 KOG0644 Uncharacterized conser 88.5 0.42 9E-06 57.0 3.9 59 243-301 1050-1108(1113)
68 PLN03086 PRLI-interacting fact 87.9 1.2 2.5E-05 52.1 7.0 61 612-675 7-68 (567)
69 KOG3116 Predicted C3H1-type Zn 87.8 0.68 1.5E-05 44.8 4.1 7 536-542 145-151 (177)
70 cd05495 Bromo_cbp_like Bromodo 87.4 0.1 2.2E-06 48.0 -1.5 55 38-97 35-89 (108)
71 PTZ00121 MAEBL; Provisional 86.9 3.7 7.9E-05 52.0 10.5 15 600-614 1120-1134(2084)
72 KOG0732 AAA+-type ATPase conta 86.6 0.36 7.7E-06 59.5 2.0 64 222-285 533-601 (1080)
73 cd05513 Bromo_brd7_like Bromod 86.2 0.074 1.6E-06 48.1 -3.0 55 38-97 30-84 (98)
74 cd05501 Bromo_SP100C_like Brom 85.8 0.12 2.6E-06 47.3 -1.9 55 37-97 28-82 (102)
75 cd05524 Bromo_polybromo_I Brom 85.8 0.14 3E-06 47.5 -1.6 55 38-97 37-91 (113)
76 cd05509 Bromo_gcn5_like Bromod 85.3 0.12 2.7E-06 46.5 -2.1 55 38-97 30-84 (101)
77 cd05507 Bromo_brd8_like Bromod 85.3 0.12 2.6E-06 47.1 -2.2 55 38-97 32-86 (104)
78 cd05504 Bromo_Acf1_like Bromod 84.7 0.15 3.2E-06 47.5 -1.9 55 38-97 41-95 (115)
79 cd05511 Bromo_TFIID Bromodomai 84.2 0.27 5.8E-06 45.5 -0.4 79 38-127 29-107 (112)
80 cd05520 Bromo_polybromo_III Br 84.1 0.12 2.6E-06 47.1 -2.7 55 38-97 35-89 (103)
81 cd05508 Bromo_RACK7 Bromodomai 83.9 0.12 2.6E-06 46.8 -2.8 55 38-97 31-85 (99)
82 KOG4364 Chromatin assembly fac 83.9 4.6 0.0001 47.5 9.0 9 610-618 248-256 (811)
83 cd05505 Bromo_WSTF_like Bromod 83.2 0.15 3.3E-06 46.0 -2.4 55 38-97 29-83 (97)
84 KOG1144 Translation initiation 83.0 5.2 0.00011 48.0 9.1 30 629-658 225-254 (1064)
85 cd05496 Bromo_WDR9_II Bromodom 82.8 0.23 5.1E-06 46.5 -1.4 55 38-97 34-89 (119)
86 KOG2072 Translation initiation 82.8 3.9 8.6E-05 49.1 8.1 44 613-657 568-613 (988)
87 KOG2002 TPR-containing nuclear 82.4 7.3 0.00016 47.8 10.2 32 237-268 261-293 (1018)
88 KOG2357 Uncharacterized conser 82.0 3 6.5E-05 46.6 6.4 19 664-682 419-437 (440)
89 cd05529 Bromo_WDR9_I_like Brom 81.6 0.21 4.4E-06 47.4 -2.3 55 38-97 57-111 (128)
90 cd05512 Bromo_brd1_like Bromod 81.5 0.16 3.4E-06 46.0 -3.0 55 38-97 30-84 (98)
91 cd05517 Bromo_polybromo_II Bro 81.5 0.18 3.9E-06 46.0 -2.7 55 38-97 35-89 (103)
92 PLN02316 synthase/transferase 81.2 4.9 0.00011 50.3 8.6 30 627-658 259-288 (1036)
93 cd05521 Bromo_Rsc1_2_I Bromodo 80.0 0.23 5E-06 45.6 -2.5 67 38-127 36-102 (106)
94 cd05499 Bromo_BDF1_2_II Bromod 79.1 0.25 5.4E-06 44.7 -2.6 55 38-97 34-88 (102)
95 cd05528 Bromo_AAA Bromodomain; 79.0 0.12 2.7E-06 47.8 -4.6 51 38-93 32-82 (112)
96 cd05515 Bromo_polybromo_V Brom 77.1 0.37 8.1E-06 44.0 -2.0 55 38-97 35-89 (105)
97 cd05516 Bromo_SNF2L2 Bromodoma 75.9 0.43 9.3E-06 43.8 -2.0 55 38-97 36-90 (107)
98 PF06936 Selenoprotein_S: Sele 74.6 14 0.0003 37.6 8.2 54 579-639 34-88 (190)
99 PHA03308 transcriptional regul 74.3 2.8 6E-05 49.5 3.4 12 405-416 1192-1203(1463)
100 KOG2412 Nuclear-export-signal 74.3 12 0.00026 43.3 8.4 19 637-655 214-232 (591)
101 KOG2891 Surface glycoprotein [ 74.1 13 0.00028 39.7 8.0 7 477-483 271-277 (445)
102 KOG0577 Serine/threonine prote 74.0 2.1E+02 0.0045 34.5 22.0 26 635-660 535-560 (948)
103 PF07946 DUF1682: Protein of u 74.0 11 0.00023 41.2 7.8 8 396-403 110-117 (321)
104 cd05525 Bromo_ASH1 Bromodomain 73.7 0.39 8.3E-06 44.1 -2.9 56 37-97 36-91 (106)
105 cd05503 Bromo_BAZ2A_B_like Bro 73.2 0.51 1.1E-05 42.4 -2.2 54 39-97 30-83 (97)
106 cd05510 Bromo_SPT7_like Bromod 72.8 0.58 1.3E-05 43.4 -2.0 51 38-93 37-87 (112)
107 KOG1363 Predicted regulator of 72.5 14 0.0003 42.5 8.5 19 666-684 348-366 (460)
108 cd05498 Bromo_Brdt_II_like Bro 72.5 0.43 9.3E-06 43.1 -2.9 55 38-97 34-88 (102)
109 smart00297 BROMO bromo domain. 72.0 0.55 1.2E-05 42.1 -2.3 53 39-96 37-89 (107)
110 PHA03308 transcriptional regul 71.6 2.8 6.2E-05 49.4 2.7 9 624-632 1352-1360(1463)
111 cd05500 Bromo_BDF1_2_I Bromodo 70.6 0.62 1.3E-05 42.3 -2.3 55 38-97 35-89 (103)
112 COG3064 TolA Membrane protein 70.4 19 0.00042 39.2 8.3 7 639-645 132-138 (387)
113 KOG1150 Predicted molecular ch 70.3 52 0.0011 33.9 10.9 77 601-677 111-205 (250)
114 TIGR03825 FliH_bacil flagellar 70.3 16 0.00036 38.4 8.0 33 626-658 35-67 (255)
115 KOG2891 Surface glycoprotein [ 69.7 19 0.00041 38.5 8.0 15 633-647 333-347 (445)
116 cd05519 Bromo_SNF2 Bromodomain 69.2 0.57 1.2E-05 42.5 -2.8 55 38-97 35-89 (103)
117 PRK06568 F0F1 ATP synthase sub 68.8 43 0.00093 33.0 9.9 20 666-685 102-121 (154)
118 PF07218 RAP1: Rhoptry-associa 67.7 32 0.00069 40.1 9.8 15 645-659 245-259 (782)
119 KOG2072 Translation initiation 65.2 36 0.00077 41.5 9.9 6 203-208 149-154 (988)
120 PF05672 MAP7: MAP7 (E-MAP-115 64.8 40 0.00086 33.8 8.8 26 627-652 43-68 (171)
121 PF03154 Atrophin-1: Atrophin- 64.4 3.5 7.7E-05 50.4 1.7 46 628-682 579-624 (982)
122 KOG3654 Uncharacterized CH dom 63.9 19 0.00042 41.3 7.1 11 678-688 450-460 (708)
123 KOG2412 Nuclear-export-signal 63.5 29 0.00063 40.4 8.5 10 674-683 261-270 (591)
124 PRK00409 recombination and DNA 63.5 43 0.00093 41.1 10.6 29 359-387 224-252 (782)
125 cd05506 Bromo_plant1 Bromodoma 63.3 0.89 1.9E-05 40.7 -2.8 55 38-97 31-85 (99)
126 PF07946 DUF1682: Protein of u 62.7 22 0.00048 38.8 7.3 10 605-614 242-251 (321)
127 cd05502 Bromo_tif1_like Bromod 61.0 1.3 2.7E-05 40.7 -2.3 55 38-97 32-89 (109)
128 PRK06569 F0F1 ATP synthase sub 60.8 84 0.0018 31.1 10.2 12 608-619 36-47 (155)
129 PF05110 AF-4: AF-4 proto-onco 60.3 11 0.00023 48.0 4.9 9 109-117 47-55 (1191)
130 PF06936 Selenoprotein_S: Sele 60.1 72 0.0016 32.5 9.9 39 646-684 77-119 (190)
131 PF05262 Borrelia_P83: Borreli 60.1 33 0.00071 39.8 8.3 7 603-609 204-210 (489)
132 PRK06568 F0F1 ATP synthase sub 59.8 76 0.0017 31.3 9.7 23 664-686 89-111 (154)
133 PF05110 AF-4: AF-4 proto-onco 58.9 12 0.00026 47.6 4.9 9 507-515 452-460 (1191)
134 cd05492 Bromo_ZMYND11 Bromodom 58.8 1.7 3.8E-05 40.2 -1.7 72 39-121 36-107 (109)
135 PLN02316 synthase/transferase 58.3 24 0.00052 44.5 7.3 16 397-412 99-114 (1036)
136 cd05522 Bromo_Rsc1_2_II Bromod 58.1 1.2 2.6E-05 40.6 -2.9 55 38-97 36-90 (104)
137 KOG0644 Uncharacterized conser 57.5 2.9 6.4E-05 50.2 -0.5 68 228-298 89-186 (1113)
138 cd04369 Bromodomain Bromodomai 56.7 1.6 3.4E-05 37.6 -2.3 52 37-93 30-81 (99)
139 KOG3375 Phosphoprotein/predict 56.0 48 0.0011 32.4 7.4 57 629-685 108-169 (174)
140 KOG2133 Transcriptional corepr 54.8 7.2 0.00016 47.7 2.0 44 638-683 816-859 (1229)
141 KOG4661 Hsp27-ERE-TATA-binding 54.4 70 0.0015 37.5 9.5 8 414-421 422-429 (940)
142 PRK08476 F0F1 ATP synthase sub 54.3 1.7E+02 0.0037 28.0 11.1 18 668-685 96-113 (141)
143 TIGR01069 mutS2 MutS2 family p 54.1 56 0.0012 40.1 9.5 8 608-615 497-504 (771)
144 CHL00019 atpF ATP synthase CF0 53.2 1.8E+02 0.0038 29.1 11.4 15 605-619 47-61 (184)
145 PF12544 LAM_C: Lysine-2,3-ami 51.1 4.2 9.1E-05 38.6 -0.5 45 31-85 4-49 (127)
146 PRK00247 putative inner membra 50.8 62 0.0013 37.0 8.5 15 361-375 81-95 (429)
147 KOG1827 Chromatin remodeling c 50.2 2.3 5E-05 50.0 -2.9 74 223-298 214-287 (629)
148 KOG2140 Uncharacterized conser 49.4 11 0.00024 43.6 2.3 8 409-416 541-548 (739)
149 CHL00118 atpG ATP synthase CF0 49.2 1.9E+02 0.0041 28.1 10.6 17 669-685 123-139 (156)
150 PF15437 PGBA_C: Plasminogen-b 48.6 90 0.0019 27.7 7.1 45 636-686 39-83 (86)
151 PF15236 CCDC66: Coiled-coil d 48.4 1.2E+02 0.0026 30.2 8.9 6 614-619 53-58 (157)
152 PRK05759 F0F1 ATP synthase sub 47.8 2E+02 0.0044 27.5 10.6 9 610-618 32-40 (156)
153 PF14372 DUF4413: Domain of un 47.2 55 0.0012 29.6 6.1 51 258-308 3-53 (101)
154 KOG2130 Phosphatidylserine-spe 46.8 13 0.00028 40.6 2.2 20 259-278 156-175 (407)
155 PRK14474 F0F1 ATP synthase sub 46.8 1.7E+02 0.0037 30.9 10.6 15 671-685 108-122 (250)
156 PRK00247 putative inner membra 46.6 95 0.0021 35.5 9.1 7 675-681 381-387 (429)
157 KOG2357 Uncharacterized conser 46.2 67 0.0015 36.4 7.6 16 619-634 361-376 (440)
158 PRK06231 F0F1 ATP synthase sub 46.1 2.3E+02 0.005 29.0 11.1 18 668-685 148-165 (205)
159 PRK14475 F0F1 ATP synthase sub 45.2 2.3E+02 0.0051 27.8 10.7 19 668-686 110-128 (167)
160 PRK06231 F0F1 ATP synthase sub 43.9 1.7E+02 0.0037 30.0 9.8 12 608-619 74-85 (205)
161 KOG2441 mRNA splicing factor/p 43.3 58 0.0012 36.6 6.5 28 627-654 302-329 (506)
162 PRK14472 F0F1 ATP synthase sub 43.1 2.5E+02 0.0053 27.8 10.6 16 670-685 120-135 (175)
163 KOG3634 Troponin [Cytoskeleton 42.7 67 0.0015 35.3 6.8 15 601-615 94-108 (361)
164 PF06098 Radial_spoke_3: Radia 42.7 77 0.0017 34.4 7.3 7 587-593 126-132 (291)
165 PRK07352 F0F1 ATP synthase sub 41.9 3.2E+02 0.0068 27.0 11.1 17 669-685 120-136 (174)
166 PF06637 PV-1: PV-1 protein (P 41.5 2.3E+02 0.0051 31.9 10.7 39 607-655 292-335 (442)
167 PRK00409 recombination and DNA 41.4 1.1E+02 0.0024 37.6 9.3 8 608-615 502-509 (782)
168 PF05672 MAP7: MAP7 (E-MAP-115 41.1 1.7E+02 0.0036 29.5 8.8 21 628-648 36-56 (171)
169 PF03154 Atrophin-1: Atrophin- 41.1 17 0.00037 44.7 2.3 24 628-651 582-605 (982)
170 COG4942 Membrane-bound metallo 41.0 1.4E+02 0.003 34.1 9.2 11 364-374 61-71 (420)
171 TIGR03321 alt_F1F0_F0_B altern 40.8 2.4E+02 0.0052 29.5 10.6 15 671-685 108-122 (246)
172 PRK01558 V-type ATP synthase s 40.1 2.6E+02 0.0057 28.4 10.4 6 641-646 32-37 (198)
173 PRK13454 F0F1 ATP synthase sub 40.0 2.2E+02 0.0047 28.5 9.7 20 668-687 131-150 (181)
174 PF06785 UPF0242: Uncharacteri 40.0 1.5E+02 0.0031 32.9 8.7 47 633-682 132-178 (401)
175 PRK13460 F0F1 ATP synthase sub 39.7 3.1E+02 0.0067 27.1 10.6 17 669-685 117-133 (173)
176 PRK11546 zraP zinc resistance 39.7 2.9E+02 0.0063 27.0 10.0 62 580-641 33-103 (143)
177 PF06637 PV-1: PV-1 protein (P 39.0 2.2E+02 0.0048 32.0 10.1 46 618-663 286-331 (442)
178 KOG2002 TPR-containing nuclear 39.0 2.9E+02 0.0063 34.7 11.9 13 620-632 798-811 (1018)
179 PF10252 PP28: Casein kinase s 38.9 1.3E+02 0.0028 26.7 6.8 33 625-657 22-55 (82)
180 PRK09174 F0F1 ATP synthase sub 38.6 2.3E+02 0.0049 29.1 9.7 18 668-685 153-170 (204)
181 CHL00118 atpG ATP synthase CF0 37.5 2.8E+02 0.0061 26.9 9.8 17 668-684 111-127 (156)
182 KOG1363 Predicted regulator of 37.4 77 0.0017 36.6 6.7 8 380-387 208-215 (460)
183 PTZ00399 cysteinyl-tRNA-synthe 37.1 61 0.0013 39.0 6.1 20 623-642 547-566 (651)
184 KOG2130 Phosphatidylserine-spe 36.8 28 0.0006 38.1 2.8 7 298-304 163-169 (407)
185 PRK13461 F0F1 ATP synthase sub 36.5 3.8E+02 0.0082 25.9 10.6 17 669-685 106-122 (159)
186 PF09831 DUF2058: Uncharacteri 35.9 1.8E+02 0.0039 29.4 8.2 22 666-687 59-80 (177)
187 PRK07352 F0F1 ATP synthase sub 35.7 2.9E+02 0.0064 27.2 9.8 12 608-619 45-56 (174)
188 PF03879 Cgr1: Cgr1 family; I 35.6 3.7E+02 0.0081 25.1 10.1 15 604-618 39-53 (108)
189 PF07218 RAP1: Rhoptry-associa 35.2 1E+02 0.0023 36.1 7.1 27 397-423 36-62 (782)
190 KOG2689 Predicted ubiquitin re 35.0 1.2E+02 0.0027 32.6 7.2 9 588-596 81-89 (290)
191 PRK13453 F0F1 ATP synthase sub 34.9 4.6E+02 0.0099 25.9 11.2 18 668-685 118-135 (173)
192 PRK07353 F0F1 ATP synthase sub 34.3 4E+02 0.0086 25.0 10.6 19 668-686 105-123 (140)
193 TIGR03321 alt_F1F0_F0_B altern 34.2 3.8E+02 0.0082 28.0 10.8 9 610-618 33-41 (246)
194 PRK13455 F0F1 ATP synthase sub 33.9 3.1E+02 0.0067 27.3 9.7 19 668-686 127-145 (184)
195 PRK13460 F0F1 ATP synthase sub 33.6 3.3E+02 0.0072 26.8 9.8 9 610-618 44-52 (173)
196 PRK13454 F0F1 ATP synthase sub 33.2 5.1E+02 0.011 25.9 12.2 12 608-619 57-68 (181)
197 PRK09174 F0F1 ATP synthase sub 32.9 5E+02 0.011 26.6 11.1 12 608-619 79-90 (204)
198 PRK14473 F0F1 ATP synthase sub 32.2 4.8E+02 0.01 25.3 11.1 17 669-685 109-125 (164)
199 PF10872 DUF2740: Protein of u 31.9 45 0.00099 25.7 2.5 15 112-126 30-44 (48)
200 PF11875 DUF3395: Domain of un 31.7 1.9E+02 0.0041 28.3 7.5 23 633-655 8-30 (151)
201 PRK14475 F0F1 ATP synthase sub 30.8 4E+02 0.0087 26.1 9.8 12 608-619 36-47 (167)
202 PRK09173 F0F1 ATP synthase sub 30.6 5E+02 0.011 25.1 10.6 15 671-685 105-119 (159)
203 COG4741 Predicted secreted end 30.4 4.4E+02 0.0096 26.2 9.5 7 678-684 74-80 (175)
204 PRK14474 F0F1 ATP synthase sub 30.4 5.9E+02 0.013 26.9 11.5 9 610-618 33-41 (250)
205 PRK13453 F0F1 ATP synthase sub 30.4 4.1E+02 0.0088 26.3 9.8 8 611-618 47-54 (173)
206 PRK14471 F0F1 ATP synthase sub 30.3 4.1E+02 0.0089 25.8 9.7 18 668-685 108-125 (164)
207 PRK14472 F0F1 ATP synthase sub 29.9 4.2E+02 0.009 26.1 9.8 9 610-618 46-54 (175)
208 PF15402 Spc7_N: N-terminus of 29.1 57 0.0012 40.6 4.1 16 637-652 146-161 (927)
209 COG5269 ZUO1 Ribosome-associat 29.1 1.8E+02 0.0039 31.4 7.2 41 613-653 216-262 (379)
210 KOG4691 Uncharacterized conser 29.0 3.2E+02 0.007 28.1 8.6 6 596-601 70-75 (227)
211 CHL00019 atpF ATP synthase CF0 28.9 4.4E+02 0.0094 26.3 9.8 17 669-685 125-141 (184)
212 COG5269 ZUO1 Ribosome-associat 28.4 3.3E+02 0.0072 29.5 9.0 72 610-684 234-308 (379)
213 PF09802 Sec66: Preprotein tra 28.3 6.6E+02 0.014 25.7 12.6 38 588-625 65-110 (190)
214 PRK06800 fliH flagellar assemb 27.8 4.5E+02 0.0098 27.0 9.3 9 611-619 43-51 (228)
215 KOG0982 Centrosomal protein Nu 26.8 2.7E+02 0.0059 31.9 8.4 27 223-249 66-93 (502)
216 PF00439 Bromodomain: Bromodom 26.5 2.7 5.9E-05 35.9 -5.6 55 36-95 23-77 (84)
217 PRK13428 F0F1 ATP synthase sub 26.5 3.7E+02 0.0081 30.8 9.9 18 668-685 101-118 (445)
218 PRK07353 F0F1 ATP synthase sub 26.1 5.5E+02 0.012 24.0 9.8 7 612-618 35-41 (140)
219 TIGR02606 antidote_CC2985 puta 26.0 85 0.0018 26.6 3.5 27 250-276 12-38 (69)
220 PRK13455 F0F1 ATP synthase sub 25.0 6.9E+02 0.015 24.8 12.0 11 609-619 54-64 (184)
221 PRK14471 F0F1 ATP synthase sub 24.9 6.4E+02 0.014 24.4 10.6 7 612-618 38-44 (164)
222 PTZ00436 60S ribosomal protein 24.3 4.8E+02 0.01 28.7 9.3 24 595-618 100-123 (357)
223 TIGR03752 conj_TIGR03752 integ 24.1 3.5E+02 0.0075 31.5 8.8 66 590-655 41-111 (472)
224 PF05262 Borrelia_P83: Borreli 23.7 2.2E+02 0.0047 33.3 7.2 7 598-604 214-220 (489)
225 PF02841 GBP_C: Guanylate-bind 22.9 3.6E+02 0.0079 29.0 8.5 30 627-656 214-243 (297)
226 PRK08475 F0F1 ATP synthase sub 22.8 6.9E+02 0.015 24.6 9.8 60 627-686 81-140 (167)
227 PTZ00491 major vault protein; 22.3 3.4E+02 0.0074 33.7 8.7 27 594-620 642-670 (850)
228 PF01237 Oxysterol_BP: Oxyster 22.2 1.5E+02 0.0032 32.7 5.4 29 616-647 292-320 (354)
229 PHA03309 transcriptional regul 22.1 80 0.0017 38.7 3.4 16 64-79 1302-1322(2033)
230 TIGR01541 tape_meas_lam_C phag 21.9 6.1E+02 0.013 28.1 10.1 22 596-620 7-28 (332)
231 TIGR03319 YmdA_YtgF conserved 21.3 5.5E+02 0.012 30.2 10.1 72 611-686 78-155 (514)
232 KOG0718 Molecular chaperone (D 21.1 2.8E+02 0.006 32.2 7.2 52 624-677 396-447 (546)
233 COG1390 NtpE Archaeal/vacuolar 21.1 6.3E+02 0.014 25.8 9.3 21 633-653 19-39 (194)
234 PF11221 Med21: Subunit 21 of 20.6 2.8E+02 0.0061 26.7 6.4 63 607-680 76-142 (144)
235 PF14738 PaaSYMP: Solute carri 20.4 8.4E+02 0.018 24.1 11.0 51 608-658 50-103 (154)
236 KOG2441 mRNA splicing factor/p 20.4 1.8E+02 0.004 32.9 5.5 17 408-424 143-159 (506)
237 KOG0343 RNA Helicase [RNA proc 20.2 1.3E+02 0.0029 35.6 4.6 71 580-658 608-679 (758)
238 PRK06669 fliH flagellar assemb 20.2 8.6E+02 0.019 25.8 10.6 42 603-649 76-117 (281)
239 PF11516 DUF3220: Protein of u 20.1 48 0.001 29.1 0.8 11 598-608 92-102 (106)
No 1
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=100.00 E-value=7.4e-43 Score=401.99 Aligned_cols=536 Identities=27% Similarity=0.362 Sum_probs=329.9
Q ss_pred CCchhHhhhcccccCCCCCcccccCccccccccCccccccccccCC--------------------------------Cc
Q 005614 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNID--------------------------------GY 86 (688)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~~~~~~rk~i~~n~~--------------------------------~~ 86 (688)
+|+|+..|.++|+.+ ++-.||-++||.+...|...+..+.-|.. +-
T Consensus 24 ~~~~~~~~~~~~d~~--~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~ 101 (640)
T KOG1474|consen 24 LPAYYEIIKRPMDIG--TIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQSLEKLFPKKLRSMPSDEEDK 101 (640)
T ss_pred chhhhcccCCCCCch--hhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccccchhhcccccccccccccCC
Confidence 689999999999888 89999999999998888877765543311 11
Q ss_pred cccCCccceeecCcCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCcccCC-CccccccCCCCCCCCccCCCCCccccC
Q 005614 87 DNFGVPLQVLTLSKMSQTERRSLELKLKTDLEQVRVLQKKVASLSSNVVLSP-SSDIRSCNDGQKRPLLESVGGPSVVLA 165 (688)
Q Consensus 87 ~~f~v~~~~~~~s~~s~~e~~~L~~Rl~~eLeqvR~l~kki~~~~~~~~~sp-~~~~~s~~~~~~~~~~~s~~~~s~~~s 165 (688)
..+.++..++++.+++..++++|..||..+|+|||.+.++++.....-++++ ...... .+.+ ...........
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~d~~~ 175 (640)
T KOG1474|consen 102 SSVGPKASKIPLDKDSSSQVRKLSERLKQELQQVRPLTKAVEFSPEPSVVSPVSPASQP--FKSK----NGVKKVADTCV 175 (640)
T ss_pred cccccccccCcCCCCchhhhhhhhhccccccccCCcccccccccccccccCCCCCcccc--cccc----cchhhhhcccc
Confidence 1234666788999999999999999999999999999999972222222333 110000 0000 00000000000
Q ss_pred CCCCCCCCCCCCCCCCcCCC--CC--CCCCC-----CCCCCCCCchHHHHHHHHHHHHHHHcCCCCccccCcccccccCC
Q 005614 166 PKGKKRAPNGRNGPQTKKGN--SG--RLEPK-----KPAGAASSSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNI 236 (688)
Q Consensus 166 ~~~kKr~~~~~~~~~~kr~~--~~--r~~~~-----k~~~~~~~~~~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~~~~~ 236 (688)
... +.........+.+++. .+ ..... .........+..+++.|..||..||.|+++|+|+.|||++.+++
T Consensus 176 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgL 254 (640)
T KOG1474|consen 176 KSY-KSKSEREPSPGQKREGTVAPNSSRESGDSAAEEEAKPKSKLTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGL 254 (640)
T ss_pred ccc-cccCcCCCCccccccccccCccccccccccccccccccccccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCC
Confidence 000 0000000000101110 00 00000 12233445678999999999999999999999999999999999
Q ss_pred CchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCC
Q 005614 237 PDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKKLPVTVDM 316 (688)
Q Consensus 237 PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~gs~V~~~A~~L~~~Fe~~~k~i~~k~p~~~~~ 316 (688)
||||+||++||||+||++||.+|.|.++.+|++||||||+|||+||++|++||.||..|+.+|+.+|+.+...+......
T Consensus 255 pDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~~~ 334 (640)
T KOG1474|consen 255 PDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDNCMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIEESESA 334 (640)
T ss_pred cchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999976554321000
Q ss_pred -CCCCCCCcchhHHhhhcCCCCccccCCCCccccccccccccCCCHHHHHHHHHHHHhhcccChHHHHHHHhhhcCC--C
Q 005614 317 -TAVPSRADDMIETETRMGMPPMKKKKVSPKETKIKAEPVRRVMTNEEKRILSTELEALLEELPESIIDFLKEHSAG--E 393 (688)
Q Consensus 317 -e~~p~~~~~~~e~~~~~~~P~~kkrK~sp~~~~~~~ep~kr~mT~eEK~~L~~~I~~L~~E~l~~Iv~IIk~~~~~--~ 393 (688)
........ .......+....++.+-.......++....|+.+|+..+...+..++.+...+++..++..... .
T Consensus 335 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 410 (640)
T KOG1474|consen 335 VKEEAGMAS----SDQIPSNSVEGPRSSSFESRESASEPSSELMSEEERKKLLAELKLLLKDVPPQLIALLQRPVSKPPR 410 (640)
T ss_pred ccccccccc----ccccccccccCcccccchhcccccCcccccccHHhhhhhHhhhhcchhhhhHHHHhhhhccccCccc
Confidence 00000000 0000000001111111111112233345689999999999999999999999999999887733 3
Q ss_pred CCCCcEEEEccCCCHHHHHHHHHH--HHHHHHHhhhccCCCCCCccccccccCCCCCccccccCCCCCCccccccCCCCC
Q 005614 394 TGEDELEIDIDALSDDTLFALRKL--LDDYLLEKQQKQANPGPCEMEVLNESGLSNSSMQLCKGNDLVDEDVDIVGGNDP 471 (688)
Q Consensus 394 ~~~dEIEIDId~L~~~TL~eL~~~--V~~~l~ek~K~~~k~e~~~~e~~~~s~~snSs~~~~k~~e~~eE~vdi~gg~~~ 471 (688)
....++++++..+... |.+... .........+..+..+. ..+-+..+++ .+
T Consensus 411 ~~e~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~r~~t~~~~---------------------~~l~~~~~~~----~~ 463 (640)
T KOG1474|consen 411 KIEEELESDKRPLVTG--KLIKEKNKKEKAANENKRDMTAPEK---------------------AKLKELLQNL----LP 463 (640)
T ss_pred cccccccccccccchh--hhhhhhhcccccccccccccccccc---------------------ccchhhccCC----CC
Confidence 3445666666555544 333321 00001111111110000 0111111111 11
Q ss_pred CCCCCCcchhcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCccchhhhcccCCCccccccCCCCC
Q 005614 472 PVTDIPPVAIEKDAANRNSKCSSSSSSSSESGSSSSDSDSGSSSGSEPDAAKASVPANAVEENLVSGANLDEKKSEGVPD 551 (688)
Q Consensus 472 p~ss~~Pv~iek~~~~~~s~sSSsSSSSS~S~SSSS~SdS~sSs~s~s~a~~~~~~~~~~~~~~~s~~~~d~~~~~~~~~ 551 (688)
|-....++.+.+.
T Consensus 464 p~~l~~~~~~~~~------------------------------------------------------------------- 476 (640)
T KOG1474|consen 464 PNKLESIVEILKP------------------------------------------------------------------- 476 (640)
T ss_pred CccccCcccccch-------------------------------------------------------------------
Confidence 1111122222100
Q ss_pred CCCCCCcccccccccCCCCCCcccccCCCCCCCCCCCCCCChhHHHHHHhhhhhhhhhHHHHHH-HHhh-hcCCCChHHH
Q 005614 552 IGNSSVNSLDQVELNSQGKPVAIVADGHHEGESAPSERQVSPDKLYRAALLRNRFADTILKARE-KALE-KGEKRDPEKL 629 (688)
Q Consensus 552 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~sp~k~~raa~l~~rfadti~ka~~-k~l~-~g~k~dp~~~ 629 (688)
......|.+.....+.....+. .--+..|+.-++..++.+++..+...|++-+.+++. +.+- .....+|+++
T Consensus 477 --~~~~~~l~~~~~~~~~~~~~vd----~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 550 (640)
T KOG1474|consen 477 --EKRQLDLSQNDDEIELDLDSVD----GSQSREPSSNPLEIETIRETLKLSTERELELSKASSSRSLMRNRSGSLPERL 550 (640)
T ss_pred --hhhcccccccccchhhcccccc----cccccCCCcccchhhhhhccccchhhHHHHHHHHhhhhhhccCcccccccch
Confidence 0000001010011111111110 001111225677789999999999999999999998 5554 4566789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005614 630 RIEREELERRHREEKARLQAEAKAAEEARRKAEAEAAAEAKRKRELEREAARQALQMVK 688 (688)
Q Consensus 630 ~~e~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~r~~~r~~lq~m~ 688 (688)
.+..++.+.++..++++.++.-..++.++..+.+.+.. .++.++.+++.++.++..|.
T Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~ 608 (640)
T KOG1474|consen 551 SRSISEEKLREKSEKSSSEASSSSSEDGENKAASSGSL-SPSSSSLERESNNSAEANGS 608 (640)
T ss_pred hhhhhHHhhhhhhHhhhhhhhhhhHHHHhhcccccccc-CccccccccchhHHHHhccc
Confidence 99999999999999999999999998888766543333 46677899999999988763
No 2
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=3.3e-27 Score=218.64 Aligned_cols=106 Identities=38% Similarity=0.629 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhhcC
Q 005614 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (688)
Q Consensus 203 ~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (688)
..|.+.|..||..|++|+.+|+|..|||+. .+||||+||++||||+||++||.+|.|.++.+|..||+|||.||++||
T Consensus 4 ~~w~~~c~~il~~l~~~~~s~~F~~PVd~~--~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN 81 (119)
T cd05496 4 SDWKKQCKELVNLMWDCEDSEPFRQPVDLL--KYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYT 81 (119)
T ss_pred HHHHHHHHHHHHHHHhCCccccccCCCChh--hcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 679999999999999999999999999987 799999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHhhC
Q 005614 283 PP-QNDVHIMADTLRKYFEVRWKAIEKKL 310 (688)
Q Consensus 283 ~~-gs~V~~~A~~L~~~Fe~~~k~i~~k~ 310 (688)
++ ++.||.+|..|++.|+++|+.|...+
T Consensus 82 ~~~~s~i~~~a~~L~~~F~~~~~~l~~~~ 110 (119)
T cd05496 82 PNKRSRIYSMTLRLSALFEEHIKKIISDW 110 (119)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 85 99999999999999999999987654
No 3
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=4.4e-27 Score=214.49 Aligned_cols=104 Identities=37% Similarity=0.580 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHcC-CCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhhc
Q 005614 203 AMLMKQCENLLTRLMSH-QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (688)
Q Consensus 203 ~~~~k~c~~IL~~L~~~-~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (688)
.++++.|..|++.|+++ +.+|+|..||++...++||||++|++||||+||++||.+|.|.++.+|.+||+|||.||+.|
T Consensus 2 ~~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~y 81 (108)
T cd05495 2 EELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLY 81 (108)
T ss_pred HHHHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999 99999999999998899999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 005614 282 NPPQNDVHIMADTLRKYFEVRWKAI 306 (688)
Q Consensus 282 N~~gs~V~~~A~~L~~~Fe~~~k~i 306 (688)
|+++|.||.+|..|++.|++.++.+
T Consensus 82 N~~~s~i~~~a~~l~~~F~~~~~~~ 106 (108)
T cd05495 82 NRKTSRVYKYCTKLAEVFEQEIDPV 106 (108)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988765
No 4
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=4.7e-27 Score=213.96 Aligned_cols=102 Identities=40% Similarity=0.676 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHcCCCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhhcCC
Q 005614 204 MLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNP 283 (688)
Q Consensus 204 ~~~k~c~~IL~~L~~~~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~ 283 (688)
++.-.+..||..|++|+.+|+|..|||+.+.++||||+||++||||+||++||++|.|.++.+|.+||+|||.||+.||+
T Consensus 5 q~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~ 84 (107)
T cd05497 5 QLQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNK 84 (107)
T ss_pred HHHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 44455578999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 005614 284 PQNDVHIMADTLRKYFEVRWKA 305 (688)
Q Consensus 284 ~gs~V~~~A~~L~~~Fe~~~k~ 305 (688)
+||+||.+|..|++.|+++++.
T Consensus 85 ~~s~i~~~A~~l~~~f~~~l~~ 106 (107)
T cd05497 85 PGDDVVLMAQTLEKLFLQKLAQ 106 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999998764
No 5
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.7e-26 Score=206.77 Aligned_cols=95 Identities=32% Similarity=0.557 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHcCCCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhhcCCCC
Q 005614 206 MKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQ 285 (688)
Q Consensus 206 ~k~c~~IL~~L~~~~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~g 285 (688)
++.|..||+.|++|+.+|+|..||++. .+||||++|++||||+||++||+.|.|.++.+|.+||+|||.||++||++|
T Consensus 2 ~~~c~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05505 2 LQKCEEILSKILKYRFSWPFREPVTAD--EAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENG 79 (97)
T ss_pred HHHHHHHHHHHHhCCCcccccCCCChh--hcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 578999999999999999999999965 799999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 005614 286 NDVHIMADTLRKYFEVR 302 (688)
Q Consensus 286 s~V~~~A~~L~~~Fe~~ 302 (688)
+.||.+|..|++.|.++
T Consensus 80 s~i~~~a~~le~~f~~~ 96 (97)
T cd05505 80 SYVLSCMRKTEQCCVNL 96 (97)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999864
No 6
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=3.4e-26 Score=205.00 Aligned_cols=99 Identities=66% Similarity=1.179 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHcCCCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhhcCCC
Q 005614 205 LMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPP 284 (688)
Q Consensus 205 ~~k~c~~IL~~L~~~~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~ 284 (688)
+++.|..||+.|++|+.+++|..||++...++|+||++|++||||+||++||+++.|.++.+|..||+|||.||++||++
T Consensus 1 ~~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~ 80 (99)
T cd05506 1 VMKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPP 80 (99)
T ss_pred CHHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 36899999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 005614 285 QNDVHIMADTLRKYFEVRW 303 (688)
Q Consensus 285 gs~V~~~A~~L~~~Fe~~~ 303 (688)
+|.+|.+|..|++.|+++|
T Consensus 81 ~s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 81 GNDVHTMAKELLKIFETRW 99 (99)
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999987
No 7
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=5.2e-26 Score=203.54 Aligned_cols=96 Identities=41% Similarity=0.766 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHcCCCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhhcCCCC
Q 005614 206 MKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQ 285 (688)
Q Consensus 206 ~k~c~~IL~~L~~~~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~g 285 (688)
+..|..||..|++|+.+++|..||++. .+|+||++|++||||+||++||.+|.|+++.+|..||+|||.||+.||+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~--~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05503 2 LALCETILDEMEAHEDAWPFLEPVNTK--LVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDD 79 (97)
T ss_pred HHHHHHHHHHHHcCCCchhhcCCCCcc--ccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 578999999999999999999999977 799999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 005614 286 NDVHIMADTLRKYFEVRW 303 (688)
Q Consensus 286 s~V~~~A~~L~~~Fe~~~ 303 (688)
+.||.+|..|++.|+..|
T Consensus 80 s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 80 SEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999999987
No 8
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=7.2e-26 Score=204.06 Aligned_cols=98 Identities=50% Similarity=0.901 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHcC---CCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhhcC
Q 005614 206 MKQCENLLTRLMSH---QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (688)
Q Consensus 206 ~k~c~~IL~~L~~~---~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (688)
++.|..||+.|+++ +.+++|..||++...++||||++|++||||+||++||.+|.|.++.+|..||+|||.||+.||
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn 81 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYN 81 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 68999999999999 889999999999888999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 005614 283 PPQNDVHIMADTLRKYFEVRW 303 (688)
Q Consensus 283 ~~gs~V~~~A~~L~~~Fe~~~ 303 (688)
+++|.|+.+|..|++.|+++|
T Consensus 82 ~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 82 PPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999987
No 9
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.6e-25 Score=206.44 Aligned_cols=102 Identities=36% Similarity=0.711 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhhcC
Q 005614 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (688)
Q Consensus 203 ~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (688)
...+..|..||..|++|+.+|+|..||++. .+||||++|++||||+||++||+.|.|.++.+|.+||+|||.||++||
T Consensus 11 ~~~~~~c~~il~~l~~~~~s~~F~~pvd~~--~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~yN 88 (115)
T cd05504 11 PLNLSALEQLLVEIVKHKDSWPFLRPVSKI--EVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLYN 88 (115)
T ss_pred HHHHHHHHHHHHHHHhCCCchhhcCCCCcc--ccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 678899999999999999999999999965 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 005614 283 PPQNDVHIMADTLRKYFEVRWKAI 306 (688)
Q Consensus 283 ~~gs~V~~~A~~L~~~Fe~~~k~i 306 (688)
++++.+|.+|..|+++|++.++.+
T Consensus 89 ~~~s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 89 PEHTSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999876
No 10
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=1.4e-25 Score=202.28 Aligned_cols=98 Identities=47% Similarity=0.898 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHcC---CCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhhcC
Q 005614 206 MKQCENLLTRLMSH---QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (688)
Q Consensus 206 ~k~c~~IL~~L~~~---~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (688)
++.|..||..|+++ +.+++|..|||+.+..+||||++|++||||+||++||.++.|.++.+|..||+|||.||+.||
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn 81 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFN 81 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 57899999999995 579999999999988999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 005614 283 PPQNDVHIMADTLRKYFEVRW 303 (688)
Q Consensus 283 ~~gs~V~~~A~~L~~~Fe~~~ 303 (688)
++++.+|.+|..|++.|+++|
T Consensus 82 ~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 82 PEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999887
No 11
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=1.9e-25 Score=202.35 Aligned_cols=100 Identities=33% Similarity=0.468 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhhcC
Q 005614 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (688)
Q Consensus 203 ~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (688)
..|.+.|..|++.|++|+.+++|..||++. .+||||++|++||||+||++||++|.|.++.+|..||+|||.||++||
T Consensus 2 ~~~~~~~~~il~~l~~~~~a~~F~~pV~~~--~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 79 (104)
T cd05507 2 RAWKKAILLVYRTLASHRYASVFLKPVTED--IAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYN 79 (104)
T ss_pred hHHHHHHHHHHHHHHcCCCCHhhcCCCCcc--ccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 468999999999999999999999999975 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 005614 283 PPQNDVHIMADTLRKYFEVRWK 304 (688)
Q Consensus 283 ~~gs~V~~~A~~L~~~Fe~~~k 304 (688)
++++.||.+|..|+..|...+.
T Consensus 80 ~~~s~v~~~A~~l~~~~~~~~~ 101 (104)
T cd05507 80 SSDHDVYLMAVEMQREVMSQIQ 101 (104)
T ss_pred CCCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999987654
No 12
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.3e-25 Score=201.48 Aligned_cols=101 Identities=38% Similarity=0.521 Sum_probs=97.8
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhhc
Q 005614 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (688)
Q Consensus 202 ~~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (688)
+..+.+.|..||+.|++++.+++|..||+|.+.++||||++|++||||+||++||.+|.|.++.+|..||+|||.||+.|
T Consensus 2 t~~~~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 81 (103)
T cd05500 2 TKHQHKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTF 81 (103)
T ss_pred CHHHHHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 005614 282 NPPQNDVHIMADTLRKYFEVR 302 (688)
Q Consensus 282 N~~gs~V~~~A~~L~~~Fe~~ 302 (688)
|+++|.++.+|..|++.|++.
T Consensus 82 N~~~s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 82 NGPEHPVSQMGKRLQAAFEKH 102 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999874
No 13
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=5.3e-25 Score=201.00 Aligned_cols=102 Identities=36% Similarity=0.691 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhC---CCCCCHHHHHHHHHHhhhhh
Q 005614 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITS---GQYSDPLAFAADVRLTFSNA 278 (688)
Q Consensus 202 ~~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~---~~Y~s~~eF~~DvrLIf~NA 278 (688)
....++.|..||..|++|+.+++|..||++ .+|+||++|++||||+||++||+. +.|.++.+|.+||+|||+||
T Consensus 2 ~~~~~~~c~~il~~l~~~~~s~~F~~pv~~---~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na 78 (109)
T cd05502 2 SPIDQRKCERLLLELYCHELSLPFHEPVSP---SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNC 78 (109)
T ss_pred CHHHHHHHHHHHHHHHhCCCChhhcCCCCC---CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 356889999999999999999999999997 599999999999999999999999 69999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 005614 279 MTYNPPQNDVHIMADTLRKYFEVRWKAI 306 (688)
Q Consensus 279 ~~YN~~gs~V~~~A~~L~~~Fe~~~k~i 306 (688)
+.||++++.++.+|..|++.|++.|+.+
T Consensus 79 ~~yN~~~s~i~~~a~~l~~~f~~~~~~~ 106 (109)
T cd05502 79 YKFNEEDSEVAQAGKELELFFEEQLKEI 106 (109)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998875
No 14
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=6.9e-25 Score=197.58 Aligned_cols=97 Identities=29% Similarity=0.397 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHcCCCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhhcCCC
Q 005614 205 LMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPP 284 (688)
Q Consensus 205 ~~k~c~~IL~~L~~~~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~ 284 (688)
.++.|+.||..|++++.+++|..+ |. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||++
T Consensus 3 ~l~~ce~il~~l~~~~~s~~f~~~--p~--~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~ 78 (102)
T cd05501 3 ELLKCEFLLLKVYCMSKSGFFISK--PY--YIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKD 78 (102)
T ss_pred HHHHHHHHHHHHHhCcccccccCC--CC--CCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 456799999999999999999763 33 79999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 005614 285 QNDVHIMADTLRKYFEVRWKAI 306 (688)
Q Consensus 285 gs~V~~~A~~L~~~Fe~~~k~i 306 (688)
+ .++.+|..|++.|++.|+.+
T Consensus 79 ~-~~~~~a~~L~~~Fek~~~~~ 99 (102)
T cd05501 79 D-DFGQVGITLEKKFEKNFKEV 99 (102)
T ss_pred C-HHHHHHHHHHHHHHHHHHHH
Confidence 9 99999999999999999875
No 15
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=7.5e-25 Score=201.03 Aligned_cols=102 Identities=29% Similarity=0.453 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHcC-CCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhhc
Q 005614 203 AMLMKQCENLLTRLMSH-QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (688)
Q Consensus 203 ~~~~k~c~~IL~~L~~~-~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (688)
.++...|..||..|++| +.+++|..||++. .+||||++|++||||+||++||++|.|.++.+|.+||+|||.||+.|
T Consensus 6 ~~~~~~~~~il~~l~~~~~~s~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~y 83 (112)
T cd05510 6 EEFYESLDKVLNELKTYTEHSTPFLTKVSKR--EAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLY 83 (112)
T ss_pred HHHHHHHHHHHHHHHhcCccccchhcCCChh--hcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999 8999999999976 89999999999999999999999999999999999999999999999
Q ss_pred CCCCC-HHHHHHHHHHHHHHHHHHHH
Q 005614 282 NPPQN-DVHIMADTLRKYFEVRWKAI 306 (688)
Q Consensus 282 N~~gs-~V~~~A~~L~~~Fe~~~k~i 306 (688)
|++++ .++.+|..|++.|+..+..|
T Consensus 84 N~~~s~~~~~~A~~l~~~~~~~~~~~ 109 (112)
T cd05510 84 NSDPSHPLRRHANFMKKKAEHLLKLI 109 (112)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 99876 67899999999999887764
No 16
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=8e-25 Score=196.92 Aligned_cols=99 Identities=38% Similarity=0.652 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHcCCCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhhcCCC
Q 005614 205 LMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPP 284 (688)
Q Consensus 205 ~~k~c~~IL~~L~~~~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~ 284 (688)
+..+|..||+.|++|+.+++|..||++. .+|+||++|++||||+||++||.++.|.++.+|..||+|||+||++||++
T Consensus 2 ~~~~~~~il~~l~~~~~a~~F~~pv~~~--~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~ 79 (101)
T cd05509 2 LYTQLKKVLDSLKNHKSAWPFLEPVDKE--EAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGP 79 (101)
T ss_pred hHHHHHHHHHHHHhCCCchhhcCCCChh--hcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 5789999999999999999999999987 69999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 005614 285 QNDVHIMADTLRKYFEVRWKA 305 (688)
Q Consensus 285 gs~V~~~A~~L~~~Fe~~~k~ 305 (688)
++.+|.+|..|+..|++.+++
T Consensus 80 ~s~~~~~a~~l~~~f~~~~~~ 100 (101)
T cd05509 80 DTEYYKCANKLEKFFWKKLKE 100 (101)
T ss_pred CCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999988765
No 17
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=9.3e-25 Score=196.24 Aligned_cols=97 Identities=29% Similarity=0.393 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhhcC
Q 005614 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (688)
Q Consensus 203 ~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (688)
.++...+..++..|+ |+.+|+|..||++. .+||||.+|++||||+||++||.+|.|.++++|.+||+|||.||++||
T Consensus 2 ~~l~~~L~~~~~~~~-~~~s~~F~~PV~~~--~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN 78 (99)
T cd05508 2 DQLSKLLKFALERMK-QPGAEPFLKPVDLE--QFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYN 78 (99)
T ss_pred hHHHHHHHHHHHHHh-CcCcchhcCCCChh--hCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 457788889999999 99999999999975 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 005614 283 PPQNDVHIMADTLRKYFEVR 302 (688)
Q Consensus 283 ~~gs~V~~~A~~L~~~Fe~~ 302 (688)
+++|.++.+|..|.+.|+..
T Consensus 79 ~~~s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 79 GGDHKLTQAAKAIVKICEQE 98 (99)
T ss_pred CCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999998753
No 18
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.6e-24 Score=197.32 Aligned_cols=99 Identities=22% Similarity=0.323 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHcCCC------CccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhh
Q 005614 205 LMKQCENLLTRLMSHQF------GWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNA 278 (688)
Q Consensus 205 ~~k~c~~IL~~L~~~~~------s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA 278 (688)
+.+.|..||+.|+++.. +++|..||+.. .+||||.+|++||||+||++||.+|.|.++.+|..||.|||.||
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~--~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na 79 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRK--ELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNA 79 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcc--cCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 67899999999999976 89999987754 89999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 005614 279 MTYNPPQNDVHIMADTLRKYFEVRWKA 305 (688)
Q Consensus 279 ~~YN~~gs~V~~~A~~L~~~Fe~~~k~ 305 (688)
++||++||.||.+|..|++.|++.+++
T Consensus 80 ~~yN~~~s~i~~~a~~l~~~f~~~~~~ 106 (107)
T cd05516 80 QTFNLEGSLIYEDSIVLQSVFKSARQK 106 (107)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998865
No 19
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=3.3e-24 Score=192.37 Aligned_cols=92 Identities=35% Similarity=0.475 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHcCCCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhhcCCC
Q 005614 205 LMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPP 284 (688)
Q Consensus 205 ~~k~c~~IL~~L~~~~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~ 284 (688)
+...|..||+.|+.++.+++|..||++. .+||||++|++||||+||++||+++.|.++.+|.+||+|||.||++||++
T Consensus 2 l~~~l~~il~~l~~~~~~~~F~~PV~~~--~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 79 (98)
T cd05513 2 LQKALEQLIRQLQRKDPHGFFAFPVTDF--IAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKP 79 (98)
T ss_pred HHHHHHHHHHHHHcCCccccccCcCCcc--ccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 5788999999999999999999999965 79999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 005614 285 QNDVHIMADTLRKY 298 (688)
Q Consensus 285 gs~V~~~A~~L~~~ 298 (688)
++.+|.+|..|...
T Consensus 80 ~s~~~~~A~~L~~~ 93 (98)
T cd05513 80 DTIYYKAAKKLLHS 93 (98)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999654
No 20
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=5.9e-24 Score=190.77 Aligned_cols=92 Identities=32% Similarity=0.485 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHcCCCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhhcCCC
Q 005614 205 LMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPP 284 (688)
Q Consensus 205 ~~k~c~~IL~~L~~~~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~ 284 (688)
+...|+.+|+.|+.|+.+++|..||++. .+||||++|++||||+||++||.++.|.++.+|..||+|||.||+.||++
T Consensus 2 ~~~~l~~il~~l~~~~~~~~F~~pVd~~--~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 79 (98)
T cd05512 2 LEVLLRKTLDQLQEKDTAEIFSEPVDLS--EVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAK 79 (98)
T ss_pred HHHHHHHHHHHHHhCCCchhhcCCCCcc--ccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4568899999999999999999999976 79999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 005614 285 QNDVHIMADTLRKY 298 (688)
Q Consensus 285 gs~V~~~A~~L~~~ 298 (688)
++.+|.+|..|++.
T Consensus 80 ~s~~~~~A~~l~~~ 93 (98)
T cd05512 80 DTIFYRAAVRLRDQ 93 (98)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999864
No 21
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.90 E-value=9.6e-24 Score=193.74 Aligned_cols=102 Identities=34% Similarity=0.468 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhhcC
Q 005614 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (688)
Q Consensus 203 ~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (688)
.++...|..|++.|+.|+.+++|..||++. .+||||++|++||||+||++||+++.|.|+.+|.+||+|||.||+.||
T Consensus 2 ~~lr~~L~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN 79 (112)
T cd05528 2 RELRLFLRDVLKRLASDKRFNAFTKPVDEE--EVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYN 79 (112)
T ss_pred hHHHHHHHHHHHHHHhCCCchhhcCCCCcc--ccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHC
Confidence 357788999999999999999999999977 799999999999999999999999999999999999999999999999
Q ss_pred CC----CCHHHHHHHHHHHHHHHHHHHH
Q 005614 283 PP----QNDVHIMADTLRKYFEVRWKAI 306 (688)
Q Consensus 283 ~~----gs~V~~~A~~L~~~Fe~~~k~i 306 (688)
++ |+.|+.+|..|++.|..++..+
T Consensus 80 ~~~s~~~s~i~~~A~~L~~~~~~~~~~~ 107 (112)
T cd05528 80 PDRDPADKLIRSRACELRDEVHAMIEAE 107 (112)
T ss_pred CCCCccccHHHHHHHHHHHHHHHHHHhc
Confidence 99 5799999999999999887653
No 22
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=1.5e-23 Score=192.49 Aligned_cols=102 Identities=31% Similarity=0.516 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHcCCCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhhcCCCCC
Q 005614 207 KQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQN 286 (688)
Q Consensus 207 k~c~~IL~~L~~~~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~gs 286 (688)
-....|+..|++|+.+++|..||++. .+|+||++|++||||+||++||.++.|.++.+|.+||+|||.||+.||+++|
T Consensus 3 ~~l~~ii~~l~~~~~s~~F~~pv~~~--~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s 80 (112)
T cd05511 3 FILDEIVNELKNLPDSWPFHTPVNKK--KVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDS 80 (112)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCChh--hcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 35688999999999999999999977 7999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhC
Q 005614 287 DVHIMADTLRKYFEVRWKAIEKKL 310 (688)
Q Consensus 287 ~V~~~A~~L~~~Fe~~~k~i~~k~ 310 (688)
.+|.+|..|.+.|+..+..++.++
T Consensus 81 ~i~~~A~~l~~~~~~~~~~~~~~~ 104 (112)
T cd05511 81 VYTKKAKEMLELAEELLAEREEKL 104 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999887665
No 23
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=3.5e-23 Score=187.21 Aligned_cols=97 Identities=27% Similarity=0.395 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHcC------CCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhh
Q 005614 205 LMKQCENLLTRLMSH------QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNA 278 (688)
Q Consensus 205 ~~k~c~~IL~~L~~~------~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA 278 (688)
+++.|..|++.|+++ +.+++|..||+. ..+||||++|++||||+||++||+.|.|.++.+|..||+|||.||
T Consensus 1 ~~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~--~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na 78 (103)
T cd05519 1 LKAAMLEIYDAVLNCEDETGRKLSELFLEKPSK--KLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANA 78 (103)
T ss_pred CHHHHHHHHHHHHHhcCcCCCchhHHhcCCCCC--CCCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 367899999999955 458999999774 489999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHH
Q 005614 279 MTYNPPQNDVHIMADTLRKYFEVRW 303 (688)
Q Consensus 279 ~~YN~~gs~V~~~A~~L~~~Fe~~~ 303 (688)
++||++++.+|.+|..|++.|+++|
T Consensus 79 ~~yn~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 79 RTYNQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999998763
No 24
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.89 E-value=3.8e-23 Score=187.68 Aligned_cols=96 Identities=28% Similarity=0.412 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHcC------CCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhh
Q 005614 206 MKQCENLLTRLMSH------QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAM 279 (688)
Q Consensus 206 ~k~c~~IL~~L~~~------~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~ 279 (688)
+++|..|++.|..+ +.+++|..||+.. ++||||++|++||||+||++||.++.|.++.+|..||.|||.||+
T Consensus 2 ~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~--~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~ 79 (105)
T cd05515 2 QQKLWELYNAVKNYTDGRGRRLSLIFMRLPSKS--EYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNAC 79 (105)
T ss_pred hHHHHHHHHHHHHhhCcCCCcccHHhccCCCcc--cCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 57899999999886 4579999997754 899999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHH
Q 005614 280 TYNPPQNDVHIMADTLRKYFEVRW 303 (688)
Q Consensus 280 ~YN~~gs~V~~~A~~L~~~Fe~~~ 303 (688)
+||++||.||.+|..|+++|.+..
T Consensus 80 ~yN~~~s~i~~~A~~L~~~~~~~~ 103 (105)
T cd05515 80 KYNEPDSQIYKDALTLQKVLLETK 103 (105)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998765
No 25
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=1.1e-22 Score=186.95 Aligned_cols=101 Identities=25% Similarity=0.388 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHcCC------CCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhh
Q 005614 205 LMKQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNA 278 (688)
Q Consensus 205 ~~k~c~~IL~~L~~~~------~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA 278 (688)
..+.|..|++.|++++ .+.+|..+++ +..+||||++|++||||+||++||.++.|.++.+|..||+|||.||
T Consensus 3 ~~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~--~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na 80 (113)
T cd05524 3 PIAVCQELYDTIRNYKSEDGRILCESFIRVPK--RRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNA 80 (113)
T ss_pred HHHHHHHHHHHHHhhcccCCCchhHHHhcCCC--cccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHH
Confidence 3689999999999764 4568998655 6699999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005614 279 MTYNPPQNDVHIMADTLRKYFEVRWKAIE 307 (688)
Q Consensus 279 ~~YN~~gs~V~~~A~~L~~~Fe~~~k~i~ 307 (688)
++||++|+.+|.+|..|++.|++.++++.
T Consensus 81 ~~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 109 (113)
T cd05524 81 KAYYKPDSPEHKDACKLWELFLSARNEVL 109 (113)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999887764
No 26
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=3e-22 Score=187.96 Aligned_cols=105 Identities=28% Similarity=0.403 Sum_probs=98.9
Q ss_pred CCchHHHHHHHHHHHHHHH---cCCCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhh
Q 005614 199 SSSNAMLMKQCENLLTRLM---SHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTF 275 (688)
Q Consensus 199 ~~~~~~~~k~c~~IL~~L~---~~~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf 275 (688)
......+...|..++..|+ .++.+++|..||++.. .+|+||++|++||||+||++||.++.|+++.+|..||+|||
T Consensus 19 ~~~~~~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~-~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~ 97 (128)
T cd05529 19 PHIRDEERERLISGLDKLLLSLQLEIAEYFEYPVDLRA-WYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLIL 97 (128)
T ss_pred CCCCHHHHHHHHHHHHHHHhcccCcccccccCCCCccc-cCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 4456889999999999999 8999999999999764 79999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q 005614 276 SNAMTYNPPQNDVHIMADTLRKYFEVRWK 304 (688)
Q Consensus 276 ~NA~~YN~~gs~V~~~A~~L~~~Fe~~~k 304 (688)
.||++||++++.++.+|..|++.|...+.
T Consensus 98 ~Na~~yN~~~s~i~~~A~~l~~~~~~~l~ 126 (128)
T cd05529 98 SNAETFNEPNSEIAKKAKRLSDWLLRILS 126 (128)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998764
No 27
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.87 E-value=1.4e-22 Score=183.52 Aligned_cols=94 Identities=34% Similarity=0.517 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHcCC------CCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhh
Q 005614 206 MKQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAM 279 (688)
Q Consensus 206 ~k~c~~IL~~L~~~~------~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~ 279 (688)
++.|..|++.|+++. .+++|..+++ +..+||||++|++||||+||++||..+.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~--~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~ 79 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPS--KVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAK 79 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCC--CCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHH
Confidence 578999999999874 4699999766 55999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHH
Q 005614 280 TYNPPQNDVHIMADTLRKYFEV 301 (688)
Q Consensus 280 ~YN~~gs~V~~~A~~L~~~Fe~ 301 (688)
+||++||.||.+|..|++.|+.
T Consensus 80 ~yN~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 80 TFNEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999975
No 28
>smart00297 BROMO bromo domain.
Probab=99.87 E-value=3.2e-22 Score=180.42 Aligned_cols=102 Identities=44% Similarity=0.724 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhhc
Q 005614 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (688)
Q Consensus 202 ~~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (688)
...+...|..|+..+.+|+.+++|..||++. .+|+||.+|++||||++|++||++|.|.++.+|.+||++||.||+.|
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~--~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~ 82 (107)
T smart00297 5 QKKLQSLLKAVLDKLDSHRLSWPFLKPVDRK--EAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTY 82 (107)
T ss_pred HHHHHHHHHHHHHHHHhCccchhhccCCChh--hccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999999999866 69999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Q 005614 282 NPPQNDVHIMADTLRKYFEVRWKA 305 (688)
Q Consensus 282 N~~gs~V~~~A~~L~~~Fe~~~k~ 305 (688)
|++++.+|.+|..|...|+..|+.
T Consensus 83 n~~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 83 NGPDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999875
No 29
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=2.9e-22 Score=182.22 Aligned_cols=96 Identities=27% Similarity=0.403 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHcCC------CCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhh
Q 005614 205 LMKQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNA 278 (688)
Q Consensus 205 ~~k~c~~IL~~L~~~~------~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA 278 (688)
+...|..|++.|..++ .+++|..+++ +..+||||++|++||||+||++||.+|.|.++.+|..||.|||.||
T Consensus 3 l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~--k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na 80 (106)
T cd05525 3 LAQVLKEICDAIITYKDSNGQSLAIPFINLPS--KKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNA 80 (106)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccHhhccCCC--cccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 4567788888887764 4799999755 5699999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHH
Q 005614 279 MTYNPPQNDVHIMADTLRKYFEVR 302 (688)
Q Consensus 279 ~~YN~~gs~V~~~A~~L~~~Fe~~ 302 (688)
+.||++||.||.+|..|++.|++.
T Consensus 81 ~~yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 81 EKYYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999864
No 30
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.87 E-value=2.7e-22 Score=181.56 Aligned_cols=91 Identities=27% Similarity=0.453 Sum_probs=82.1
Q ss_pred HHHHHHHHcC------CCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhhcCC
Q 005614 210 ENLLTRLMSH------QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNP 283 (688)
Q Consensus 210 ~~IL~~L~~~------~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~ 283 (688)
..|++.|+++ ..+++|..||+. ..+||||++|++||||+||++||.+|.|.++.+|..||+|||.||++||+
T Consensus 6 ~~l~~~i~~~~~~~g~~~s~pF~~~p~~--~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~ 83 (103)
T cd05520 6 WQLYDTIRNARNNQGQLLAEPFLKLPSK--RKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNV 83 (103)
T ss_pred HHHHHHHHhhcCCCCCCccHhhhcCCCc--ccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 4455555554 468999998774 48999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 005614 284 PQNDVHIMADTLRKYFEVR 302 (688)
Q Consensus 284 ~gs~V~~~A~~L~~~Fe~~ 302 (688)
+||.+|.+|..|+++|+++
T Consensus 84 ~~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 84 PNSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999864
No 31
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.87 E-value=3.4e-22 Score=180.90 Aligned_cols=94 Identities=27% Similarity=0.415 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHcC------CCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhh
Q 005614 207 KQCENLLTRLMSH------QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (688)
Q Consensus 207 k~c~~IL~~L~~~------~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~ 280 (688)
++|..|++.|.++ ..+.+|..+|+. ..+||||++|++||||+||++||.++.|.++.+|..||+|||.||+.
T Consensus 3 ~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~--~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 80 (103)
T cd05518 3 KRMLALFLYVLEYREGSGRRLCDLFMEKPSK--KDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARH 80 (103)
T ss_pred HHHHHHHHHHHHhhccCCCcccHHHhcCCCc--ccCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4566677776665 568899987774 48999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 005614 281 YNPPQNDVHIMADTLRKYFEVR 302 (688)
Q Consensus 281 YN~~gs~V~~~A~~L~~~Fe~~ 302 (688)
||++||.||.+|..|+++|+++
T Consensus 81 yN~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 81 YNEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999863
No 32
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=5.7e-21 Score=173.23 Aligned_cols=94 Identities=27% Similarity=0.349 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHc------CCCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhh
Q 005614 207 KQCENLLTRLMS------HQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (688)
Q Consensus 207 k~c~~IL~~L~~------~~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~ 280 (688)
.++..|++.|.+ ++.+++|..+++.. .+||||++|++||||+||++||..+.|.++.+|..||+|||.||+.
T Consensus 4 ~~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~--~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 81 (104)
T cd05522 4 ARIKNILKGLRKERDENGRLLTLHFEKLPDKA--REPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKL 81 (104)
T ss_pred HHHHHHHHHHHHHhCcCCCcccHHHhcCCCcc--ccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 445555555555 46789999988755 8999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 005614 281 YNPPQNDVHIMADTLRKYFEVR 302 (688)
Q Consensus 281 YN~~gs~V~~~A~~L~~~Fe~~ 302 (688)
||++|+.+|.+|..|++.|+..
T Consensus 82 yn~~~s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 82 YNENDSQEYKDAVLLEKEARLL 103 (104)
T ss_pred HCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999863
No 33
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.84 E-value=5.6e-21 Score=164.98 Aligned_cols=84 Identities=44% Similarity=0.799 Sum_probs=79.2
Q ss_pred HHHHHHHHHcCCCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhhcCCCCCHH
Q 005614 209 CENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDV 288 (688)
Q Consensus 209 c~~IL~~L~~~~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~gs~V 288 (688)
|..||+.|++|+.+++|..||++. .+|+|+.+|++||||.+|++||.+|.|.++.+|..||++||.||+.||++++.+
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~--~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~ 78 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPK--EYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPI 78 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTT--TSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChh--hCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHH
Confidence 899999999999999999999755 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 005614 289 HIMADT 294 (688)
Q Consensus 289 ~~~A~~ 294 (688)
|.+|.+
T Consensus 79 ~~~A~~ 84 (84)
T PF00439_consen 79 YKAAEK 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999964
No 34
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.84 E-value=6.9e-21 Score=166.74 Aligned_cols=96 Identities=45% Similarity=0.624 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHcC--CCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhhcCC
Q 005614 206 MKQCENLLTRLMSH--QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNP 283 (688)
Q Consensus 206 ~k~c~~IL~~L~~~--~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~ 283 (688)
...|..|+..|+.+ +.+++|..||++. .+|+||.+|++||||++|++||.+|.|.++.+|.+||+|||.||+.||+
T Consensus 2 ~~~~~~i~~~l~~~~~~~~~~F~~~~~~~--~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~ 79 (99)
T cd04369 2 KKKLRSLLDALKKLKRDLSEPFLEPVDPK--EAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNG 79 (99)
T ss_pred HHHHHHHHHHHHhhcccccHHHhcCCChh--cCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 46899999999999 9999999999974 7999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 005614 284 PQNDVHIMADTLRKYFEVRW 303 (688)
Q Consensus 284 ~gs~V~~~A~~L~~~Fe~~~ 303 (688)
+++.++.+|..|+..|++.|
T Consensus 80 ~~~~~~~~a~~l~~~~~~~~ 99 (99)
T cd04369 80 PGSPIYKDAKKLEKLFEKLL 99 (99)
T ss_pred CCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999998754
No 35
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.83 E-value=1.5e-20 Score=170.97 Aligned_cols=95 Identities=26% Similarity=0.396 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHcCCC------CccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhh
Q 005614 205 LMKQCENLLTRLMSHQF------GWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNA 278 (688)
Q Consensus 205 ~~k~c~~IL~~L~~~~~------s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA 278 (688)
+.++|..|++.|++.+. +.+|..++ .+..+||||++|++||||+||++||.+ |.++.+|.+||.|||+||
T Consensus 2 l~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp--~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na 77 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEENGIEIHPIFNVLP--LRKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNA 77 (106)
T ss_pred HHHHHHHHHHHHHhhcCcCCCCchHhhhcCC--ccccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHH
Confidence 56789999999998744 46888644 466899999999999999999999998 999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHH
Q 005614 279 MTYNPPQNDVHIMADTLRKYFEVRW 303 (688)
Q Consensus 279 ~~YN~~gs~V~~~A~~L~~~Fe~~~ 303 (688)
++||++|+.+|.+|..|+++|..++
T Consensus 78 ~~yN~~~s~i~~~A~~le~~~~~~~ 102 (106)
T cd05521 78 RLYNTKGSVIYKYALILEKYINDVI 102 (106)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999998764
No 36
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.82 E-value=5.8e-20 Score=167.71 Aligned_cols=98 Identities=18% Similarity=0.174 Sum_probs=86.9
Q ss_pred HHHHHHHHc-CCCCccccCcccc---cccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhhcCCCC
Q 005614 210 ENLLTRLMS-HQFGWVFNTPVDV---MKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQ 285 (688)
Q Consensus 210 ~~IL~~L~~-~~~s~~F~~PVdp---~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~g 285 (688)
.-++..+.+ .+..++|..||.+ .+.++|+||++|++||||+||++||++|.|+++.+|.+||.|||+||+.||+++
T Consensus 6 ~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~~ 85 (109)
T cd05492 6 KFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGAD 85 (109)
T ss_pred HHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 445556665 4667999999974 444699999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q 005614 286 NDVHIMADTLRKYFEVRWKAIE 307 (688)
Q Consensus 286 s~V~~~A~~L~~~Fe~~~k~i~ 307 (688)
|.+|.+|..|.+.....+.+|.
T Consensus 86 s~~~~~A~~l~~d~~~el~Ei~ 107 (109)
T cd05492 86 SEQYDAARWLYRDTCHDLRELR 107 (109)
T ss_pred CHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998888877764
No 37
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.72 E-value=2e-17 Score=150.98 Aligned_cols=100 Identities=18% Similarity=0.207 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHcCC------CCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhh
Q 005614 204 MLMKQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSN 277 (688)
Q Consensus 204 ~~~k~c~~IL~~L~~~~------~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~N 277 (688)
.+++.+..|+..+++|. ++.+|.+. |. ..|+||.+|+.||||++|++||++|.|.++++|..||.|||.|
T Consensus 3 ~vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~L--P~--~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~N 78 (110)
T cd05526 3 LVQELLATLFVSVMNHQDEEGRCYSDSLAEL--PE--LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLER 78 (110)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCchHHHHHC--CC--cccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHH
Confidence 46788899999999995 36788873 33 4688999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005614 278 AMTYNPPQNDVHIMADTLRKYFEVRWKAIE 307 (688)
Q Consensus 278 A~~YN~~gs~V~~~A~~L~~~Fe~~~k~i~ 307 (688)
|++||.+||.||.+|..|+++|.....++.
T Consensus 79 Ar~yN~~~S~iy~dA~eLq~~f~~~rd~~~ 108 (110)
T cd05526 79 ARRLSRTDSEIYEDAVELQQFFIKIRDELC 108 (110)
T ss_pred HHHhCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998887764
No 38
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.68 E-value=6.7e-17 Score=176.72 Aligned_cols=105 Identities=30% Similarity=0.463 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHcC------CCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhh
Q 005614 203 AMLMKQCENLLTRLMSH------QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFS 276 (688)
Q Consensus 203 ~~~~k~c~~IL~~L~~~------~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~ 276 (688)
..+.+.|..|+..+... ..+++|..+|+ +..+|+||.||+.||||++|+++|..+.|.++++|..|+.|||.
T Consensus 141 ~~~~~~~~~i~~~~~~~~~~~~~~~s~~F~~~p~--k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~ 218 (371)
T COG5076 141 ELLYADNKAIAKFKKQLFLRDGRFLSSIFLGLPS--KREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFD 218 (371)
T ss_pred hhHHHHHHHHHHHHHHhhcccccccccccccCCc--cccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 44455555555554443 45778887555 77999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 005614 277 NAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKK 309 (688)
Q Consensus 277 NA~~YN~~gs~V~~~A~~L~~~Fe~~~k~i~~k 309 (688)
||.+||.+++.||.+|..|++.|...+..+...
T Consensus 219 N~~~yN~~~s~v~~~a~~l~~~~~~~i~~~~~~ 251 (371)
T COG5076 219 NCKLYNGPDSSVYVDAKELEKYFLKLIEEIPEE 251 (371)
T ss_pred hhhhccCCCcchhhhhHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999998876543
No 39
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.67 E-value=5.2e-17 Score=199.21 Aligned_cols=95 Identities=40% Similarity=0.850 Sum_probs=92.3
Q ss_pred HHHHHHHHHcCCCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhhcCCCCCHH
Q 005614 209 CENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDV 288 (688)
Q Consensus 209 c~~IL~~L~~~~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~gs~V 288 (688)
|..||..|+.|+.+|||++||++. .+||||+||++||||.||+.||..|.|.++.+|..||.|||.||.+||.. |.|
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~--~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i 1382 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPK--EVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEI 1382 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChh--hcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhh
Confidence 999999999999999999999977 89999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005614 289 HIMADTLRKYFEVRWKAI 306 (688)
Q Consensus 289 ~~~A~~L~~~Fe~~~k~i 306 (688)
+..+..|.++|...|...
T Consensus 1383 ~~ag~~l~~ff~~~~~~~ 1400 (1404)
T KOG1245|consen 1383 GRAGTCLRRFFHKRWRKK 1400 (1404)
T ss_pred hhhcchHHHHHHHHHHhh
Confidence 999999999999988763
No 40
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.38 E-value=3.4e-13 Score=155.00 Aligned_cols=101 Identities=35% Similarity=0.625 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHcCCCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhhcCC
Q 005614 204 MLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNP 283 (688)
Q Consensus 204 ~~~k~c~~IL~~L~~~~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~ 283 (688)
.+......||..|.+|..+|||..||+.. ++||||.+|++||||.||+.+|..+.|.....|++|+..||.||+.||+
T Consensus 606 ~~~s~~~~il~~l~~h~~awPf~~Pv~~~--e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~ 683 (720)
T KOG1472|consen 606 KLFSAIQNILDQLQNHGDAWPFLKPVNKK--EVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNG 683 (720)
T ss_pred hhhHHHHhHHhhhhcCCccCCccCccccc--cCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCC
Confidence 45667889999999999999999999966 9999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 005614 284 PQNDVHIMADTLRKYFEVRWKAI 306 (688)
Q Consensus 284 ~gs~V~~~A~~L~~~Fe~~~k~i 306 (688)
.++..|+.|..|...|...+...
T Consensus 684 ~~~~y~k~~~~le~~~~~k~~~~ 706 (720)
T KOG1472|consen 684 SDTQYYKCAQALEKFFLFKLNEL 706 (720)
T ss_pred ccchheecccchhhhhcchhhhh
Confidence 99999999999999998776654
No 41
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.37 E-value=3.2e-13 Score=124.63 Aligned_cols=81 Identities=23% Similarity=0.195 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHcCCCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCC-------CCCCHHHHHHHHHHhhh
Q 005614 204 MLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSG-------QYSDPLAFAADVRLTFS 276 (688)
Q Consensus 204 ~~~k~c~~IL~~L~~~~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~-------~Y~s~~eF~~DvrLIf~ 276 (688)
+....|..+|..++.|+.+|+|..||++.+.++||||++||+||||+||+++|..+ .|..-..+.+++..+|.
T Consensus 3 e~~~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (114)
T cd05494 3 EALERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEG 82 (114)
T ss_pred HHHHHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHcccccccccccccccccccccccccc
Confidence 45678888888888889999999999998889999999999999999999999997 45555567777788888
Q ss_pred hhhhcCCC
Q 005614 277 NAMTYNPP 284 (688)
Q Consensus 277 NA~~YN~~ 284 (688)
||..||..
T Consensus 83 ~~~~~~~~ 90 (114)
T cd05494 83 RRSPSNIY 90 (114)
T ss_pred ccCccccc
Confidence 88777764
No 42
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.10 E-value=1.2e-10 Score=139.30 Aligned_cols=103 Identities=31% Similarity=0.437 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhhc
Q 005614 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (688)
Q Consensus 202 ~~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (688)
.-...+.+..+|..|...+...+|..|||+. .+|||+++|++||||.|++.++..+.|.++++|.+|+.||..||+.|
T Consensus 563 l~p~~kLl~~~l~~lq~kD~~gif~~pvd~~--e~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~y 640 (1051)
T KOG0955|consen 563 LNPFKKLLQKSLDKLQKKDSYGIFAEPVDPS--ELPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEY 640 (1051)
T ss_pred CchHHHHHHHHHHHhhcccccCceeeccChh--hcccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHh
Confidence 3567889999999999999999999999987 89999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 005614 282 NPPQNDVHIMADTLRKYFEVRWKAI 306 (688)
Q Consensus 282 N~~gs~V~~~A~~L~~~Fe~~~k~i 306 (688)
|..+...|..|..|++.....+...
T Consensus 641 n~~dtv~~r~av~~~e~~~~~~~~a 665 (1051)
T KOG0955|consen 641 NAKDTVYYRAAVRLRELIKKDFRNA 665 (1051)
T ss_pred hccCeehHhhhHHHHhhhhhHHHhc
Confidence 9999999999999999877665543
No 43
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.90 E-value=9.3e-10 Score=101.46 Aligned_cols=41 Identities=29% Similarity=0.449 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhhcCCCC
Q 005614 245 HPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQ 285 (688)
Q Consensus 245 ~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~g 285 (688)
.||||+||++||.+|.|.++.+|.+||+|||.||++||.++
T Consensus 63 y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 63 YNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred eccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 58999999999999999999999999999999999999863
No 44
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.89 E-value=2e-09 Score=126.14 Aligned_cols=100 Identities=28% Similarity=0.388 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHcCC------CCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhh
Q 005614 207 KQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (688)
Q Consensus 207 k~c~~IL~~L~~~~------~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~ 280 (688)
+.|..|+....+|. .+.+|.. .|.+..+||||.||+.||++..|+++|..+.|.+..+...||.++|.||++
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~--~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~ 1104 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLK--LPSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNART 1104 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhccc--CcccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhh
Confidence 77888888888664 4678887 466779999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 005614 281 YNPPQNDVHIMADTLRKYFEVRWKAIEK 308 (688)
Q Consensus 281 YN~~gs~V~~~A~~L~~~Fe~~~k~i~~ 308 (688)
||..||.||.+|..|+.+|......|..
T Consensus 1105 ~~~egs~~y~d~~~l~~~~~~~~~~~~~ 1132 (1157)
T KOG0386|consen 1105 YNEEGSRVYEDAIVLQSVFKSARQEISK 1132 (1157)
T ss_pred hccCCceechhHHHHHHHHhhhHHHHhc
Confidence 9999999999999999999998888764
No 45
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.77 E-value=1.3e-08 Score=116.25 Aligned_cols=100 Identities=27% Similarity=0.402 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHHHHHHcCC------CCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhh
Q 005614 202 NAMLMKQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTF 275 (688)
Q Consensus 202 ~~~~~k~c~~IL~~L~~~~------~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf 275 (688)
...+..++..||..|..+. ....|.+ .|.+...|+||.+|..||.|..|++|+..+.|.+++.|..|+.|||
T Consensus 50 ~~~~~~~f~~il~~~~~~~d~~gk~~~d~fek--lp~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~ 127 (629)
T KOG1827|consen 50 DPPLIPKFKTILASLLDLKDDEGKQLFDKFEK--LPSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMT 127 (629)
T ss_pred ChHHHHHHHHHHHHHHhhccccCcccchhHhh--ccccccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 3556777788888887774 3567777 4557799999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 005614 276 SNAMTYNPPQNDVHIMADTLRKYFEVRW 303 (688)
Q Consensus 276 ~NA~~YN~~gs~V~~~A~~L~~~Fe~~~ 303 (688)
.||+.||.+++.+|.++..|+..|....
T Consensus 128 ena~~~n~~ds~~~~~s~~l~~~~~~~~ 155 (629)
T KOG1827|consen 128 ENARLYNRPDSLIYKDSGELEKYFISLE 155 (629)
T ss_pred HHHHHhcCcchhhhhhhhhhhcchhhhh
Confidence 9999999999999999999999998754
No 46
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.76 E-value=8.2e-09 Score=123.50 Aligned_cols=92 Identities=28% Similarity=0.507 Sum_probs=79.4
Q ss_pred HHHHHHHHcCCCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhhcCCCCCHHH
Q 005614 210 ENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVH 289 (688)
Q Consensus 210 ~~IL~~L~~~~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~gs~V~ 289 (688)
..|+.+++.-+.+|+|++||+.. .+|+||.+|++||||.+|.+++..+.|.+..+|..||++|+.||..||+..+...
T Consensus 1388 d~~vs~~~~ipes~~f~~~v~~k--~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~y~ 1465 (1563)
T KOG0008|consen 1388 DNIVSQMKEIPESWPFHEPVNKK--RVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAESAYT 1465 (1563)
T ss_pred hhHHHHHHhcchhcccccccchh--hchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCcccccc
Confidence 34555656668899999999977 7999999999999999999999999999999999999999999999999998877
Q ss_pred HHHHHHHHHHHHHH
Q 005614 290 IMADTLRKYFEVRW 303 (688)
Q Consensus 290 ~~A~~L~~~Fe~~~ 303 (688)
..|..+-.+....+
T Consensus 1466 ~k~~k~~ev~~~~~ 1479 (1563)
T KOG0008|consen 1466 KKARKIGEVGLANL 1479 (1563)
T ss_pred HHHHHHHHHHHHHH
Confidence 77766655544433
No 47
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.61 E-value=5e-08 Score=116.94 Aligned_cols=102 Identities=26% Similarity=0.380 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHcCCCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhhcCCC
Q 005614 205 LMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPP 284 (688)
Q Consensus 205 ~~k~c~~IL~~L~~~~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~ 284 (688)
+.-....|++++...++..+|..||+.. .++|||.||+.||||.|+++.+....|.+-++|..|+.|||+|..+||++
T Consensus 1262 ~ss~l~~i~n~~~~~~~t~~f~~Pv~~k--~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~ 1339 (1563)
T KOG0008|consen 1262 LSSILETIINQARSSPNTYPFPTPVNAK--EVKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGP 1339 (1563)
T ss_pred cccchHHHHHHHhcCCCCcCCCCccchh--hccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCc
Confidence 3455678899999999999999999965 89999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHh
Q 005614 285 QNDVHIMADTLRKYFEVRWKAIEK 308 (688)
Q Consensus 285 gs~V~~~A~~L~~~Fe~~~k~i~~ 308 (688)
.+.+...+..+....-..|..-+.
T Consensus 1340 ~~~~t~~~q~mls~~~~~~~eked 1363 (1563)
T KOG0008|consen 1340 LASLTRQQQSMLSLCFEKLKEKED 1363 (1563)
T ss_pred hHHHHHHHHHHHHHHHHhhchhHH
Confidence 999999998887776666655443
No 48
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.57 E-value=1.8e-08 Score=117.80 Aligned_cols=91 Identities=34% Similarity=0.658 Sum_probs=85.2
Q ss_pred HHHcCCCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhhcCCCCCHHHHHHHH
Q 005614 215 RLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADT 294 (688)
Q Consensus 215 ~L~~~~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~gs~V~~~A~~ 294 (688)
.+.+|.++|+|..||+.+.+.+|+||.+|++|||++||.+++.++.|.+..+..+|+..+|.||..||.++..|+.++..
T Consensus 3 ~~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~ 82 (640)
T KOG1474|consen 3 EARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQS 82 (640)
T ss_pred ccccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhcccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 005614 295 LRKYFEVRWKA 305 (688)
Q Consensus 295 L~~~Fe~~~k~ 305 (688)
++..|......
T Consensus 83 ~~~~~~~~~~~ 93 (640)
T KOG1474|consen 83 LEKLFPKKLRS 93 (640)
T ss_pred chhhccccccc
Confidence 99998755443
No 49
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.46 E-value=1.3e-07 Score=109.68 Aligned_cols=67 Identities=31% Similarity=0.517 Sum_probs=63.3
Q ss_pred cCCCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhhcCCCCC
Q 005614 218 SHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQN 286 (688)
Q Consensus 218 ~~~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~gs 286 (688)
.+.++|+|.+||+.. ..|+||+||+-||||+|+.+++..+.|.+.++|..|+.+||.||.+||.+-+
T Consensus 300 ~~~~s~~~~~kvs~~--~a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n~ee~ 366 (720)
T KOG1472|consen 300 RTEHSTPFLEKVSKE--DAPNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYNSEES 366 (720)
T ss_pred ccccccccccCCChh--hCcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhccccc
Confidence 489999999999966 8999999999999999999999999999999999999999999999998643
No 50
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=97.91 E-value=2.3e-06 Score=92.32 Aligned_cols=95 Identities=25% Similarity=0.213 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHcCCCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhhcCCCCC
Q 005614 207 KQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQN 286 (688)
Q Consensus 207 k~c~~IL~~L~~~~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~gs 286 (688)
...+.++.+|.+...-..|..||.+. -.|+|-+||+.|||+.|++.|++.++|.++.+|..|.+|+..||..||...+
T Consensus 22 ~~~ehhlrkl~sKdp~q~fafplt~~--map~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~T 99 (418)
T KOG1828|consen 22 GDAEHHLRKLPSKDPKQKFAFPLTDK--MAPNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPT 99 (418)
T ss_pred hhHHHHHHhccccChhhhhccccchh--hccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCc
Confidence 44456666777777777788888766 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005614 287 DVHIMADTLRKYFEVRW 303 (688)
Q Consensus 287 ~V~~~A~~L~~~Fe~~~ 303 (688)
.++..|..|..+-...+
T Consensus 100 v~~~aaKrL~~v~~~~~ 116 (418)
T KOG1828|consen 100 VPIVAAKRLCPVRLGMT 116 (418)
T ss_pred cccccccccchhhcchh
Confidence 99999998877654443
No 51
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=97.87 E-value=3.7e-05 Score=83.20 Aligned_cols=83 Identities=19% Similarity=0.128 Sum_probs=72.6
Q ss_pred HHHHHHcCCCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhhcCCCCCHHHHH
Q 005614 212 LLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIM 291 (688)
Q Consensus 212 IL~~L~~~~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~gs~V~~~ 291 (688)
...+|........|+.|+-.. ..|.|.-+|++|+|++|++.|...+.|.| .+|..|+.||+.||++||.+....|.+
T Consensus 216 q~~kl~~~~p~~~lnyg~tas--~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~yyel 292 (418)
T KOG1828|consen 216 QEDKLNRVDPVAYLNYGPTAS--FAPGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKSYYEL 292 (418)
T ss_pred HHHHhcccCchhhhcccchhh--hcccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchHHHHH
Confidence 344444556677888876644 79999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHH
Q 005614 292 ADTLRK 297 (688)
Q Consensus 292 A~~L~~ 297 (688)
|..+..
T Consensus 293 ank~lh 298 (418)
T KOG1828|consen 293 ANKQLH 298 (418)
T ss_pred HHhhhh
Confidence 987766
No 52
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=97.74 E-value=4e-06 Score=92.30 Aligned_cols=190 Identities=22% Similarity=0.322 Sum_probs=134.0
Q ss_pred CCCCC-CCchhHhhhcccccCCCCCcccccCccccccccCccccccccccCCCccccCCccceeecCcCCHHHHHHHHHH
Q 005614 34 HSSGF-VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELK 112 (688)
Q Consensus 34 ~~~~~-~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~~~~~~rk~i~~n~~~~~~f~v~~~~~~~s~~s~~e~~~L~~R 112 (688)
+++.. .||||.+|..||+-. ++-..+-+.-|.+--.=..+. .|.+++|.+||-|.-.++ +
T Consensus 172 ~p~k~~~PdYy~iIk~Pm~L~--~i~kkl~~~~Y~s~eef~~D~---~lM~~N~~~yN~~~s~v~--------------~ 232 (371)
T COG5076 172 LPSKREYPDYYEIIKSPMDLL--TIQKKLKNGRYKSFEEFVSDL---NLMFDNCKLYNGPDSSVY--------------V 232 (371)
T ss_pred CCccccCCChheeecchhhHH--HHHHHHHhhhhhhHHHHHHHH---HHHHHhhhhccCCCcchh--------------h
Confidence 34444 699999999999876 666666655565544443333 444566999998887766 5
Q ss_pred HHHHHHHHHHHHHHhhhcccCcccCCCccccccCCCCCCCCccCCCCCccccCCCCCCCCCCCCCCCCCcCCCCCCCCCC
Q 005614 113 LKTDLEQVRVLQKKVASLSSNVVLSPSSDIRSCNDGQKRPLLESVGGPSVVLAPKGKKRAPNGRNGPQTKKGNSGRLEPK 192 (688)
Q Consensus 113 l~~eLeqvR~l~kki~~~~~~~~~sp~~~~~s~~~~~~~~~~~s~~~~s~~~s~~~kKr~~~~~~~~~~kr~~~~r~~~~ 192 (688)
-...|+ ..+.+.|..++.... . .. .. +++ ..+.
T Consensus 233 ~a~~l~--~~~~~~i~~~~~~~~-------~--------------~~--------~~----~~~----~~~~-------- 265 (371)
T COG5076 233 DAKELE--KYFLKLIEEIPEEML-------E--------------LS--------IK----PGR----EERE-------- 265 (371)
T ss_pred hhHHHH--HHHHHHHHhccccch-------h--------------hc--------cC----ccc----cccc--------
Confidence 555555 455566654432110 0 00 00 000 0000
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHcCCCCccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHH
Q 005614 193 KPAGAASSSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVR 272 (688)
Q Consensus 193 k~~~~~~~~~~~~~k~c~~IL~~L~~~~~s~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~Dvr 272 (688)
. +-..++.....+...|+|..++... ..|+|+++|..+|++.|.+.++..+.|....+|..|..
T Consensus 266 ---~-----------~~~~~i~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (371)
T COG5076 266 ---E-----------RESVLITNSQAHVGAWPFLRPVSDE--EVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAK 329 (371)
T ss_pred ---c-----------chhhcccccccccccccccccCCcc--cccchhhhhhcccccccchhhhhcccCCCccccccccc
Confidence 0 1122333336778899999988755 89999999999999999999999999999999999999
Q ss_pred HhhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 005614 273 LTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKA 305 (688)
Q Consensus 273 LIf~NA~~YN~~gs~V~~~A~~L~~~Fe~~~k~ 305 (688)
++|+||..||+....++.-+..+..+|......
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (371)
T COG5076 330 LFFDNCVMYNGEVTDYYKNANVLEDFVIKKTRL 362 (371)
T ss_pred hhhhcccccchhhhhhhhhccchhhhHhhhhhh
Confidence 999999999999999999999998888766543
No 53
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.0097 Score=69.44 Aligned_cols=70 Identities=37% Similarity=0.518 Sum_probs=34.8
Q ss_pred HHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH----HHHHHH-HHHHHHHHHHHHHHH
Q 005614 611 LKAREKALEKGEKRDPEKLRIEREELERRHREEKARLQAEAKAAE-----EARR----KAEAEA-AAEAKRKRELEREAA 680 (688)
Q Consensus 611 ~ka~~k~l~~g~k~dp~~~~~e~~~~~~~~~~~~~~~~~~~~~a~-----~~~~----~~~~~~-~~~~~~~~e~~r~~~ 680 (688)
|.-|-++|+.. .|+|+||+|+.+|||.+|++-+++.+| +-.+ .++.|+ .+|.|+++-.+||||
T Consensus 329 LerRRq~leeq-------qqreree~eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkeie~rEaa 401 (1118)
T KOG1029|consen 329 LERRRQALEEQ-------QQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEIERREAA 401 (1118)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566422 355666666666666665554444433 2211 111122 223333334456778
Q ss_pred HHHHHhc
Q 005614 681 RQALQMV 687 (688)
Q Consensus 681 r~~lq~m 687 (688)
|+.|.+|
T Consensus 402 r~ElEkq 408 (1118)
T KOG1029|consen 402 REELEKQ 408 (1118)
T ss_pred HHHHHHH
Confidence 8777665
No 54
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=95.40 E-value=0.027 Score=53.50 Aligned_cols=60 Identities=20% Similarity=0.376 Sum_probs=44.2
Q ss_pred CCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 005614 246 PMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKA 305 (688)
Q Consensus 246 PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~gs~V~~~A~~L~~~Fe~~~k~ 305 (688)
|.||.-|++||+.|.|+++.+|.+||-.|+.-++.-.+....+-..-..+.-+|-+.+..
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~ 118 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMES 118 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHH
Confidence 899999999999999999999999999999877765544333334333444455444433
No 55
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.25 E-value=0.64 Score=55.72 Aligned_cols=87 Identities=34% Similarity=0.473 Sum_probs=58.8
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHhhhcC---CCChHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005614 595 KLYRAALLRNRFADTILKAREKALEKGE---KRDPEKLRIEREELER--------RHREEKARLQAEAKAAEEARRKAEA 663 (688)
Q Consensus 595 k~~raa~l~~rfadti~ka~~k~l~~g~---k~dp~~~~~e~~~~~~--------~~~~~~~~~~~~~~~a~~~~~~~~~ 663 (688)
|.||+-|=-.|=.+.=|+-+---|..++ |.+-.-||+|-|+|+. ||++.....+.|.+-+++.+.|+.+
T Consensus 428 kkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~l 507 (697)
T PF09726_consen 428 KKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASL 507 (697)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888887877755555442 5667778888777776 6666666677777777777777777
Q ss_pred HH--HHHHHHHHHHHHHHHH
Q 005614 664 EA--AAEAKRKRELEREAAR 681 (688)
Q Consensus 664 ~~--~~~~~~~~e~~r~~~r 681 (688)
|+ .+|+|.+++.|..+||
T Consensus 508 EkQL~eErk~r~~ee~~aar 527 (697)
T PF09726_consen 508 EKQLQEERKARKEEEEKAAR 527 (697)
T ss_pred HHHHHHHHHHHhHHHHhhhh
Confidence 66 3344444444444444
No 56
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=94.80 E-value=0.5 Score=58.65 Aligned_cols=17 Identities=6% Similarity=0.131 Sum_probs=11.8
Q ss_pred CCCCHHHHHHHHHHHHH
Q 005614 283 PPQNDVHIMADTLRKYF 299 (688)
Q Consensus 283 ~~gs~V~~~A~~L~~~F 299 (688)
..-++||.++..|-.++
T Consensus 221 s~KSDVWSLG~ILYELL 237 (1021)
T PTZ00266 221 DDKSDMWALGCIIYELC 237 (1021)
T ss_pred CchhHHHHHHHHHHHHH
Confidence 34578998888775544
No 57
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=94.71 E-value=0.097 Score=61.38 Aligned_cols=63 Identities=43% Similarity=0.504 Sum_probs=35.9
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q 005614 621 GEKRDPEKLRIEREELERRHREEKARLQAEA----KAAEEARRKAEAE-----AAAEAKRKRELEREAARQA 683 (688)
Q Consensus 621 g~k~dp~~~~~e~~~~~~~~~~~~~~~~~~~----~~a~~~~~~~~~~-----~~~~~~~~~e~~r~~~r~~ 683 (688)
.+-+.-|+-++|.||.+||+.||++|+++|. |++|+.+++++++ ++.+++.++|.|.|+.|++
T Consensus 930 qE~~E~ER~rrEaeek~rre~ee~k~~k~e~e~kRK~eEeqr~~qee~e~~l~~e~q~qla~e~eee~k~q~ 1001 (1259)
T KOG0163|consen 930 QELAEAERKRREAEEKRRREEEEKKRAKAEMETKRKAEEEQRKAQEEEERRLALELQEQLAKEAEEEAKRQN 1001 (1259)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445567777888888888888887776653 3344433333321 1333444555555555554
No 58
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.83 E-value=0.24 Score=58.44 Aligned_cols=15 Identities=13% Similarity=0.080 Sum_probs=9.1
Q ss_pred HHhhcccChHHHHHH
Q 005614 371 LEALLEELPESIIDF 385 (688)
Q Consensus 371 I~~L~~E~l~~Iv~I 385 (688)
...||...|.+|+.+
T Consensus 223 qS~Lpq~~LA~IW~L 237 (1118)
T KOG1029|consen 223 QSGLPQNQLAHIWTL 237 (1118)
T ss_pred hcCCchhhHhhheee
Confidence 355666666666653
No 59
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=93.28 E-value=0.31 Score=60.40 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 005614 204 MLMKQCENLLTRLM 217 (688)
Q Consensus 204 ~~~k~c~~IL~~L~ 217 (688)
.++..|..|+..|.
T Consensus 119 ~Il~Ia~QIL~ALa 132 (1021)
T PTZ00266 119 AIVDITRQLLHALA 132 (1021)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555443
No 60
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=92.22 E-value=0.022 Score=52.33 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=47.6
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCccccccccccCCCccccCCccceee
Q 005614 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (688)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~~~~~~rk~i~~n~~~~~~f~v~~~~~~ 97 (688)
.+|||+.+|..||+.+ ++-.|+++..|.+-+.-..+-+.|--| |..||-|.-.+.
T Consensus 36 ~~pdY~~iIk~PmDL~--tI~~kL~~~~Y~s~~ef~~D~~li~~N---a~~yN~~~s~i~ 90 (107)
T cd05497 36 NLPDYHKIIKTPMDLG--TIKKRLENNYYWSASECIQDFNTMFTN---CYIYNKPGDDVV 90 (107)
T ss_pred cCCcHHHHHcCcccHH--HHHHHHcCCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 3799999999999988 899999999999999887777777666 889999887766
No 61
>PLN03086 PRLI-interacting factor K; Provisional
Probab=92.14 E-value=0.5 Score=55.04 Aligned_cols=20 Identities=50% Similarity=0.610 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005614 644 KARLQAEAKAAEEARRKAEA 663 (688)
Q Consensus 644 ~~~~~~~~~~a~~~~~~~~~ 663 (688)
+.|+++|+++.++|++++||
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~ 43 (567)
T PLN03086 24 KLKLERERKAKEEAAKQREA 43 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777666554
No 62
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=91.21 E-value=0.86 Score=53.89 Aligned_cols=38 Identities=34% Similarity=0.389 Sum_probs=20.9
Q ss_pred CCCChHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 005614 622 EKRDPEKLRIEREEL----ERRHREEKARLQAEAKAAEEARR 659 (688)
Q Consensus 622 ~k~dp~~~~~e~~~~----~~~~~~~~~~~~~~~~~a~~~~~ 659 (688)
...|.++|+.-.|++ .|++.|||.|++++.+++.++++
T Consensus 919 ~~~e~er~rk~qE~~E~ER~rrEaeek~rre~ee~k~~k~e~ 960 (1259)
T KOG0163|consen 919 QIEELERLRKIQELAEAERKRREAEEKRRREEEEKKRAKAEM 960 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 345566666543322 34566677777776665554433
No 63
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.77 E-value=0.99 Score=47.05 Aligned_cols=19 Identities=32% Similarity=0.328 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005614 666 AAEAKRKRELEREAARQAL 684 (688)
Q Consensus 666 ~~~~~~~~e~~r~~~r~~l 684 (688)
+.+++.+.|++|++..+-|
T Consensus 159 e~~RkakEE~arkeheEyl 177 (299)
T KOG3054|consen 159 EKERKAKEEEARKEHEEYL 177 (299)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344445555555554433
No 64
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=90.45 E-value=0.041 Score=50.22 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=47.8
Q ss_pred CCchhHhhhcccccCCCCCcccccCccccccccCccccccccccCCCccccCCccceee
Q 005614 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (688)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~~~~~~rk~i~~n~~~~~~f~v~~~~~~ 97 (688)
+|||+.+|..||+.. ++-.+|++..|.+.+.-..+-+.|.-| |-.||-++-.|.
T Consensus 36 ~pdYy~iIk~Pmdl~--tI~~kl~~~~Y~s~~ef~~D~~li~~N---a~~yN~~~s~i~ 89 (103)
T cd05518 36 YPDYYKIILEPIDLK--TIEHNIRNDKYATEEELMDDFKLMFRN---ARHYNEEGSQVY 89 (103)
T ss_pred CccHHHHcCCCcCHH--HHHHHHCCCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 699999999999887 899999999999999988888888777 889998876666
No 65
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=90.28 E-value=1.3 Score=52.77 Aligned_cols=31 Identities=42% Similarity=0.513 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005614 630 RIEREELERRHREEKARLQAEAKAAEEARRK 660 (688)
Q Consensus 630 ~~e~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 660 (688)
++|+||..|+..||+.|.+.+.+++|+|+++
T Consensus 234 kreeEE~~r~eeEEer~~ee~E~~~eEak~k 264 (1064)
T KOG1144|consen 234 KREEEERLRREEEEERRREEEEAQEEEAKEK 264 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433
No 66
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.19 E-value=1.7 Score=45.29 Aligned_cols=24 Identities=46% Similarity=0.522 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHH
Q 005614 656 EARRKAEAEAAAEAKRK-RELEREA 679 (688)
Q Consensus 656 ~~~~~~~~~~~~~~~~~-~e~~r~~ 679 (688)
+.+++.+.++++|++.+ .|.+|+|
T Consensus 140 ~erKkdEeR~~eEae~k~ee~~Rka 164 (299)
T KOG3054|consen 140 AERKKDEERLAEEAELKEEEKERKA 164 (299)
T ss_pred HHHhhhHHHHHHHHHHhHHHHHHHH
Confidence 33444444355555544 4444444
No 67
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=88.49 E-value=0.42 Score=57.03 Aligned_cols=59 Identities=25% Similarity=0.415 Sum_probs=51.3
Q ss_pred ccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 005614 243 IKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEV 301 (688)
Q Consensus 243 Ik~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~gs~V~~~A~~L~~~Fe~ 301 (688)
..-|..|..|..+|++++|++.+.|..||..|.+||.+|-+-+..+...+..|...|..
T Consensus 1050 fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~ 1108 (1113)
T KOG0644|consen 1050 FPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDR 1108 (1113)
T ss_pred CCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhh
Confidence 44589999999999999999999999999999999999999888777777666666654
No 68
>PLN03086 PRLI-interacting factor K; Provisional
Probab=87.94 E-value=1.2 Score=52.09 Aligned_cols=61 Identities=36% Similarity=0.522 Sum_probs=40.7
Q ss_pred HHHHHHh-hhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005614 612 KAREKAL-EKGEKRDPEKLRIEREELERRHREEKARLQAEAKAAEEARRKAEAEAAAEAKRKREL 675 (688)
Q Consensus 612 ka~~k~l-~~g~k~dp~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~ 675 (688)
.|++|-. +|.+..+-.|+++|+ ||+.++|+|+...++.|+...||..+++|.++++.+-|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (567)
T PLN03086 7 RAREKLEREQRERKQRAKLKLER---ERKAKEEAAKQREAIEAAQRSRRLDAIEAQIKADQQMQE 68 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677754 366666666776655 466778888877778888888877666666655544443
No 69
>KOG3116 consensus Predicted C3H1-type Zn-finger protein [General function prediction only]
Probab=87.76 E-value=0.68 Score=44.83 Aligned_cols=7 Identities=14% Similarity=0.250 Sum_probs=2.5
Q ss_pred ccCCCcc
Q 005614 536 VSGANLD 542 (688)
Q Consensus 536 ~s~~~~d 542 (688)
+++.+++
T Consensus 145 ssdSdS~ 151 (177)
T KOG3116|consen 145 SSDSDSE 151 (177)
T ss_pred CCccccc
Confidence 3333333
No 70
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=87.38 E-value=0.1 Score=47.95 Aligned_cols=55 Identities=13% Similarity=-0.015 Sum_probs=47.3
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCccccccccccCCCccccCCccceee
Q 005614 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (688)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~~~~~~rk~i~~n~~~~~~f~v~~~~~~ 97 (688)
.+|||+.+|..||+.. ++..+++++.|.+.+....+-++|--| |..||-+.-.+.
T Consensus 35 ~~pdY~~iIk~PmDL~--tI~~kL~~~~Y~s~~ef~~D~~li~~N---a~~yN~~~s~i~ 89 (108)
T cd05495 35 GIPDYFDIVKNPMDLS--TIRRKLDTGQYQDPWQYVDDVWLMFDN---AWLYNRKTSRVY 89 (108)
T ss_pred CCCcHHHHhCCCCCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 4799999999999987 899999999999998888888888766 889998875555
No 71
>PTZ00121 MAEBL; Provisional
Probab=86.88 E-value=3.7 Score=52.04 Aligned_cols=15 Identities=27% Similarity=0.078 Sum_probs=7.9
Q ss_pred HhhhhhhhhhHHHHH
Q 005614 600 ALLRNRFADTILKAR 614 (688)
Q Consensus 600 a~l~~rfadti~ka~ 614 (688)
|..|.++|-.+-.||
T Consensus 1120 ~~~r~e~arr~eeAR 1134 (2084)
T PTZ00121 1120 AKKKAEDARKAEEAR 1134 (2084)
T ss_pred HHHHHHHHHHHHHHh
Confidence 345555555555555
No 72
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=86.56 E-value=0.36 Score=59.54 Aligned_cols=64 Identities=19% Similarity=0.210 Sum_probs=56.0
Q ss_pred CccccCcccccccC---CCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHH--HHHHhhhhhhhcCCCC
Q 005614 222 GWVFNTPVDVMKLN---IPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAA--DVRLTFSNAMTYNPPQ 285 (688)
Q Consensus 222 s~~F~~PVdp~~~~---~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~--DvrLIf~NA~~YN~~g 285 (688)
...|..|+.+...- +++|-.+|+.+||+...-.++..+.|.++.+|.. +++|||.|++.||+..
T Consensus 533 ~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 533 SVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred ccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 56788877643222 5699999999999999999999999999999999 9999999999999964
No 73
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=86.25 E-value=0.074 Score=48.13 Aligned_cols=55 Identities=11% Similarity=0.142 Sum_probs=49.0
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCccccccccccCCCccccCCccceee
Q 005614 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (688)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~~~~~~rk~i~~n~~~~~~f~v~~~~~~ 97 (688)
.+|||+.+|..||+.. ++..||++..|.+-+.-..+-+.|--| |..||-|.-.++
T Consensus 30 ~~pdY~~vIk~PmDL~--tI~~kl~~~~Y~s~~~f~~D~~li~~N---a~~yN~~~s~~~ 84 (98)
T cd05513 30 IAPGYSSIIKHPMDFS--TMKEKIKNNDYQSIEEFKDDFKLMCEN---AMKYNKPDTIYY 84 (98)
T ss_pred ccccHHHHHcCccCHH--HHHHHHhCCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 4799999999999987 899999999999999998888888777 889999987776
No 74
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=85.81 E-value=0.12 Score=47.25 Aligned_cols=55 Identities=11% Similarity=0.064 Sum_probs=48.0
Q ss_pred CCCCchhHhhhcccccCCCCCcccccCccccccccCccccccccccCCCccccCCccceee
Q 005614 37 GFVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (688)
Q Consensus 37 ~~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~~~~~~rk~i~~n~~~~~~f~v~~~~~~ 97 (688)
..+|||+.+|.+||+-+ ++-.+++++.|.+-+.-..+-+.|--| |.+||-+. .+.
T Consensus 28 ~~~pdY~~iIk~PMDL~--tI~~kL~~~~Y~s~~ef~~D~~Lif~N---~~~yN~~~-~~~ 82 (102)
T cd05501 28 YYIRDYCQGIKEPMWLN--KVKERLNERVYHTVEGFVRDMRLIFHN---HKLFYKDD-DFG 82 (102)
T ss_pred CCCCchHHHcCCCCCHH--HHHHHHcCCCCCCHHHHHHHHHHHHHH---HHHHcCCC-HHH
Confidence 46899999999999987 899999999999999999888888767 88999776 444
No 75
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=85.77 E-value=0.14 Score=47.51 Aligned_cols=55 Identities=15% Similarity=0.075 Sum_probs=48.2
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCccccccccccCCCccccCCccceee
Q 005614 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (688)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~~~~~~rk~i~~n~~~~~~f~v~~~~~~ 97 (688)
.+|+|+.+|..|++.. ++..+|++..|.+-+.-..+-+.|.-| |..||-|.-.+.
T Consensus 37 ~~PdYy~iI~~Pmdl~--tI~~kl~~~~Y~s~~~f~~D~~lm~~N---a~~yN~~~s~~~ 91 (113)
T cd05524 37 NEPEYYEVVSNPIDLL--KIQQKLKTEEYDDVDDLTADFELLINN---AKAYYKPDSPEH 91 (113)
T ss_pred cCCCHHHHhCCccCHH--HHHHHhCcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 4799999999999887 899999999999999988888888777 788998876666
No 76
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=85.32 E-value=0.12 Score=46.50 Aligned_cols=55 Identities=13% Similarity=0.119 Sum_probs=47.2
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCccccccccccCCCccccCCccceee
Q 005614 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (688)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~~~~~~rk~i~~n~~~~~~f~v~~~~~~ 97 (688)
.+|+|+.+|..||+.. ++-.+|++..|.+-+.-..+-+.|--| |..||-+.-.+.
T Consensus 30 ~~p~Y~~~I~~PmdL~--tI~~kl~~~~Y~s~~~f~~Dv~li~~N---a~~yN~~~s~~~ 84 (101)
T cd05509 30 EAPDYYDVIKKPMDLS--TMEEKLENGYYVTLEEFVADLKLIFDN---CRLYNGPDTEYY 84 (101)
T ss_pred hcCCHHHHhcCCCCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 4899999999999887 899999999999999998888888766 888997765544
No 77
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=85.29 E-value=0.12 Score=47.08 Aligned_cols=55 Identities=9% Similarity=0.022 Sum_probs=46.7
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCccccccccccCCCccccCCccceee
Q 005614 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (688)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~~~~~~rk~i~~n~~~~~~f~v~~~~~~ 97 (688)
.+|+|+..|..||+.+ ++-.||++..|.+-+.-..+-..|--| |..||-|...++
T Consensus 32 ~~p~Y~~iIk~PmDL~--tI~~kl~~~~Y~s~~ef~~D~~li~~N---a~~yN~~~s~v~ 86 (104)
T cd05507 32 IAPGYHSVVYRPMDLS--TIKKNIENGTIRSTAEFQRDVLLMFQN---AIMYNSSDHDVY 86 (104)
T ss_pred ccCCHHHHhCCCcCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 4799999999999987 899999999999998887777777666 889998876665
No 78
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=84.72 E-value=0.15 Score=47.47 Aligned_cols=55 Identities=9% Similarity=0.047 Sum_probs=47.6
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCccccccccccCCCccccCCccceee
Q 005614 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (688)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~~~~~~rk~i~~n~~~~~~f~v~~~~~~ 97 (688)
-+|||+.+|..||+.+ ++-.+|++..|.+.+.-..+-+.|--| |.+||-+.-.+.
T Consensus 41 ~~pdY~~vI~~PmDL~--tI~~kL~~~~Y~s~~~f~~Dv~LI~~N---a~~yN~~~s~i~ 95 (115)
T cd05504 41 EVPDYYDIIKKPMDLG--TIKEKLNMGEYKLAEEFLSDIQLVFSN---CFLYNPEHTSVY 95 (115)
T ss_pred ccccHHHHhcCcccHH--HHHHHHccCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 3699999999999887 899999999999998888777777666 889998887766
No 79
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=84.23 E-value=0.27 Score=45.52 Aligned_cols=79 Identities=14% Similarity=0.107 Sum_probs=61.0
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCccccccccccCCCccccCCccceeecCcCCHHHHHHHHHHHHHHH
Q 005614 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELKLKTDL 117 (688)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~~~~~~rk~i~~n~~~~~~f~v~~~~~~~s~~s~~e~~~L~~Rl~~eL 117 (688)
..|+|+..|..|++.. ++-.++.+..|.+.+....+-+.|--| |..||-+.-.+. ...+.|+......|
T Consensus 29 ~~p~Y~~~I~~PmdL~--tI~~kl~~~~Y~s~~ef~~Dv~li~~N---a~~yN~~~s~i~------~~A~~l~~~~~~~~ 97 (112)
T cd05511 29 KVPDYYKIIKRPMDLQ--TIRKKISKHKYQSREEFLEDIELIVDN---SVLYNGPDSVYT------KKAKEMLELAEELL 97 (112)
T ss_pred hcccHHHHhcCCCCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH------HHHHHHHHHHHHHH
Confidence 4799999999999887 889999999999999998888888777 888997765554 45566666666666
Q ss_pred HHHHHHHHHh
Q 005614 118 EQVRVLQKKV 127 (688)
Q Consensus 118 eqvR~l~kki 127 (688)
+++..-..-+
T Consensus 98 ~~~~~~~~~~ 107 (112)
T cd05511 98 AEREEKLTQL 107 (112)
T ss_pred HHhHHHHHHH
Confidence 6555444333
No 80
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=84.14 E-value=0.12 Score=47.14 Aligned_cols=55 Identities=11% Similarity=0.142 Sum_probs=47.8
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCccccccccccCCCccccCCccceee
Q 005614 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (688)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~~~~~~rk~i~~n~~~~~~f~v~~~~~~ 97 (688)
.+|||+.+|..|++.. ++..+|++..|.+-+.-..+-+.|.-| |..||-+.-.+.
T Consensus 35 ~~PdYy~iI~~PmdL~--tI~~kl~~~~Y~s~~~f~~D~~lm~~N---a~~yN~~~s~i~ 89 (103)
T cd05520 35 KYPDYYQEIKNPISLQ--QIRTKLKNGEYETLEELEADLNLMFEN---AKRYNVPNSRIY 89 (103)
T ss_pred cCCCHHHHcCCCcCHH--HHHHHHccCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 4699999999999887 899999999999999988888888767 889998876555
No 81
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=83.94 E-value=0.12 Score=46.84 Aligned_cols=55 Identities=22% Similarity=0.109 Sum_probs=48.4
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCccccccccccCCCccccCCccceee
Q 005614 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (688)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~~~~~~rk~i~~n~~~~~~f~v~~~~~~ 97 (688)
.+|||+..|.+||+-. ++-.+++++.|.+-+....+-+.|--| |..||-|...++
T Consensus 31 ~~pdY~~iIk~PmDL~--tI~~kl~~~~Y~s~~ef~~Dv~LI~~N---a~~YN~~~s~i~ 85 (99)
T cd05508 31 QFPDYAQYVFKPMDLS--TLEKNVRKKAYGSTDAFLADAKWILHN---AIIYNGGDHKLT 85 (99)
T ss_pred hCCCHHHHcCCCCCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 5799999999999887 899999999999999998888888777 788998876555
No 82
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=83.90 E-value=4.6 Score=47.47 Aligned_cols=9 Identities=33% Similarity=0.508 Sum_probs=3.7
Q ss_pred HHHHHHHHh
Q 005614 610 ILKAREKAL 618 (688)
Q Consensus 610 i~ka~~k~l 618 (688)
|+|-..|-.
T Consensus 248 ~~KQ~rk~m 256 (811)
T KOG4364|consen 248 LLKQLRKNM 256 (811)
T ss_pred HHHHHHHhH
Confidence 334444444
No 83
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=83.19 E-value=0.15 Score=45.96 Aligned_cols=55 Identities=9% Similarity=0.042 Sum_probs=46.4
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCccccccccccCCCccccCCccceee
Q 005614 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (688)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~~~~~~rk~i~~n~~~~~~f~v~~~~~~ 97 (688)
.+|||+.+|-.||+.+ ++-.++++..|.+-+.-..+-..|--| |..||-++-.|.
T Consensus 29 ~~pdY~~iIk~PmDL~--tI~~kl~~~~Y~s~~ef~~D~~li~~N---a~~yN~~~s~i~ 83 (97)
T cd05505 29 EAEDYKKVITNPMDLQ--TMQTKCSCGSYSSVQEFLDDMKLVFSN---AEKYYENGSYVL 83 (97)
T ss_pred hcccHHHHcCCcCCHH--HHHHHHcCCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 4799999999999987 899999999999998887777777666 889998875555
No 84
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=82.99 E-value=5.2 Score=47.95 Aligned_cols=30 Identities=33% Similarity=0.451 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005614 629 LRIEREELERRHREEKARLQAEAKAAEEAR 658 (688)
Q Consensus 629 ~~~e~~~~~~~~~~~~~~~~~~~~~a~~~~ 658 (688)
.++|.||.++|++||+.|+++|.++..+.+
T Consensus 225 ~~qe~eE~qkreeEE~~r~eeEEer~~ee~ 254 (1064)
T KOG1144|consen 225 KRQEEEERQKREEEERLRREEEEERRREEE 254 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666555444333
No 85
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=82.79 E-value=0.23 Score=46.52 Aligned_cols=55 Identities=15% Similarity=0.072 Sum_probs=46.2
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCccccccccccCCCccccCCc-cceee
Q 005614 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVP-LQVLT 97 (688)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~~~~~~rk~i~~n~~~~~~f~v~-~~~~~ 97 (688)
.+|||+.+|.+||+.. ++-.++.+..|.+.+.-..+-+.|--| |..||.+ +-.|.
T Consensus 34 ~~pdY~~iIk~PmDL~--tIk~kL~~~~Y~~~~ef~~D~~lif~N---a~~yN~~~~s~i~ 89 (119)
T cd05496 34 KYPDYRDIIDTPMDLG--TVKETLFGGNYDDPMEFAKDVRLIFSN---SKSYTPNKRSRIY 89 (119)
T ss_pred hcCcHHHHhCCcccHH--HHHHHHhCCCCCCHHHHHHHHHHHHHH---HHHHCCCCCCHHH
Confidence 3799999999999987 899999999999999888888888777 8899974 44343
No 86
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=82.76 E-value=3.9 Score=49.12 Aligned_cols=44 Identities=34% Similarity=0.433 Sum_probs=19.7
Q ss_pred HHHHHhhhcCCCChHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005614 613 AREKALEKGEKRDPEKLRIE--REELERRHREEKARLQAEAKAAEEA 657 (688)
Q Consensus 613 a~~k~l~~g~k~dp~~~~~e--~~~~~~~~~~~~~~~~~~~~~a~~~ 657 (688)
||.+.++ .-|.|-||++-+ +|+..++..+.++-.+||.++..++
T Consensus 568 aRk~liE-~rKe~~E~~~~~re~Eea~~q~~e~~~~r~aE~kRl~ee 613 (988)
T KOG2072|consen 568 ARKSLIE-KRKEDLEKQNVEREAEEAQEQAKEQRQAREAEEKRLIEE 613 (988)
T ss_pred HHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4554443 334566665544 4444444444444444444444333
No 87
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=82.41 E-value=7.3 Score=47.78 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=18.0
Q ss_pred CchhhhccCCCCHHHHHHHH-hCCCCCCHHHHH
Q 005614 237 PDYFTVIKHPMDLGTIKCKI-TSGQYSDPLAFA 268 (688)
Q Consensus 237 PDYy~iIk~PMDL~TIkkKL-~~~~Y~s~~eF~ 268 (688)
--|+.--.+||-|.-+...+ ..+.|..+.+|+
T Consensus 261 ~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la 293 (1018)
T KOG2002|consen 261 RAYKENNENPVALNHLANHFYFKKDYERVWHLA 293 (1018)
T ss_pred HHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHH
Confidence 34666777887666655544 234455444443
No 88
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.98 E-value=3 Score=46.57 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005614 664 EAAAEAKRKRELEREAARQ 682 (688)
Q Consensus 664 ~~~~~~~~~~e~~r~~~r~ 682 (688)
||++.+|+.+++.+++.|.
T Consensus 419 EakerkR~~K~~~pKMkR~ 437 (440)
T KOG2357|consen 419 EAKERKRQAKKKQPKMKRL 437 (440)
T ss_pred HHHHHHHHHHhcChhhhhh
Confidence 4444444445555544443
No 89
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=81.62 E-value=0.21 Score=47.38 Aligned_cols=55 Identities=20% Similarity=0.283 Sum_probs=49.2
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCccccccccccCCCccccCCccceee
Q 005614 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (688)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~~~~~~rk~i~~n~~~~~~f~v~~~~~~ 97 (688)
..|+|+.+|..|++.. ++-.||.+.+|.+-++-..+-++|..| |..||-+.-.+.
T Consensus 57 ~~p~Y~~iI~~PmdL~--tI~~kl~~~~Y~s~~~f~~Dv~Li~~N---a~~yN~~~s~i~ 111 (128)
T cd05529 57 WYPDYWNRVPVPMDLE--TIRSRLENRYYRSLEALRHDVRLILSN---AETFNEPNSEIA 111 (128)
T ss_pred cCCcHHHHcCCCCCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 5799999999999887 899999999999999888888988888 889998876666
No 90
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=81.54 E-value=0.16 Score=45.97 Aligned_cols=55 Identities=11% Similarity=0.130 Sum_probs=49.2
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCccccccccccCCCccccCCccceee
Q 005614 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (688)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~~~~~~rk~i~~n~~~~~~f~v~~~~~~ 97 (688)
.+|+|+.+|..||+.. ++-.||++..|.+-+.-..+-+.|--| |..||-|.-.++
T Consensus 30 ~~pdY~~iIk~PmDL~--tI~~kl~~~~Y~s~~ef~~D~~li~~N---a~~yN~~~s~~~ 84 (98)
T cd05512 30 EVPDYLDHIKQPMDFS--TMRKKLESQRYRTLEDFEADFNLIINN---CLAYNAKDTIFY 84 (98)
T ss_pred ccCCHHHHhcCCcCHH--HHHHHHhCCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 5899999999999987 899999999999999998888888777 889998887666
No 91
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=81.51 E-value=0.18 Score=46.02 Aligned_cols=55 Identities=15% Similarity=0.203 Sum_probs=47.4
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCccccccccccCCCccccCCccceee
Q 005614 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (688)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~~~~~~rk~i~~n~~~~~~f~v~~~~~~ 97 (688)
-+|+|+.+|..|++.. ++-.|+++..|.+-.....+-+.|.-| |-+||-|+-.+.
T Consensus 35 ~~pdYy~vI~~PmdL~--tI~~kl~~~~Y~s~~~f~~D~~lm~~N---a~~yN~~~s~i~ 89 (103)
T cd05517 35 LYPDYYAVIKEPIDLK--TIAQRIQSGYYKSIEDMEKDLDLMVKN---AKTFNEPGSQVY 89 (103)
T ss_pred CCCCHHHHcCCCcCHH--HHHHHHCcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 3699999999999887 899999999999998888888888766 788998876555
No 92
>PLN02316 synthase/transferase
Probab=81.21 E-value=4.9 Score=50.28 Aligned_cols=30 Identities=53% Similarity=0.537 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005614 627 EKLRIEREELERRHREEKARLQAEAKAAEEAR 658 (688)
Q Consensus 627 ~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~~ 658 (688)
+||.+|..+.+ |+.||+.|+ ++.|||++|-
T Consensus 259 ~~la~e~ae~~-~~~ee~~r~-~~~kaa~~a~ 288 (1036)
T PLN02316 259 EKLAKEEAERE-RQAEEQRRR-EEEKAAMEAD 288 (1036)
T ss_pred HHHHHHHHHHH-HHHHHHHHH-HHHhhhhhhh
Confidence 45554444333 344444444 4445555443
No 93
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=79.99 E-value=0.23 Score=45.58 Aligned_cols=67 Identities=15% Similarity=0.146 Sum_probs=52.5
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCccccccccccCCCccccCCccceeecCcCCHHHHHHHHHHHHHHH
Q 005614 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELKLKTDL 117 (688)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~~~~~~rk~i~~n~~~~~~f~v~~~~~~~s~~s~~e~~~L~~Rl~~eL 117 (688)
.+|||+.+|.+|++.. ++-.+|.+ |.+......+-+.|--| |-.||-++-.+. +...+|
T Consensus 36 ~~pdYy~iI~~PmdL~--tI~~kl~~--Y~s~~ef~~D~~li~~N---a~~yN~~~s~i~--------------~~A~~l 94 (106)
T cd05521 36 DYPDYYKIIKNPLSLN--TVKKRLPH--YTNAQEFVNDLAQIPWN---ARLYNTKGSVIY--------------KYALIL 94 (106)
T ss_pred cCccHHHHhcCCCCHH--HHHHHHHc--CCCHHHHHHHHHHHHHH---HHHHcCCCCHHH--------------HHHHHH
Confidence 6799999999999887 89999998 77777777777777666 788998876666 566666
Q ss_pred HHHHHHHHHh
Q 005614 118 EQVRVLQKKV 127 (688)
Q Consensus 118 eqvR~l~kki 127 (688)
+ +.+.++|
T Consensus 95 e--~~~~~~~ 102 (106)
T cd05521 95 E--KYINDVI 102 (106)
T ss_pred H--HHHHHhh
Confidence 6 5555555
No 94
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=79.12 E-value=0.25 Score=44.70 Aligned_cols=55 Identities=13% Similarity=0.083 Sum_probs=47.6
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCccccccccccCCCccccCCccceee
Q 005614 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (688)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~~~~~~rk~i~~n~~~~~~f~v~~~~~~ 97 (688)
-.|+|+.+|..|++.. ++-.++++..|.+...-..+-+.|--| |..||-+.-.+.
T Consensus 34 ~~pdY~~~I~~P~dL~--~I~~kl~~~~Y~s~~ef~~D~~li~~N---~~~yn~~~s~~~ 88 (102)
T cd05499 34 NIPNYFSIIKKPMDLG--TISKKLQNGQYQSAKEFERDVRLIFKN---CYTFNPEGTDVY 88 (102)
T ss_pred CCCCHHHHhcCCCCHH--HHHHHHcCCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 4699999999999887 899999999999999888888888777 788998875555
No 95
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=79.04 E-value=0.12 Score=47.81 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=44.5
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCccccccccccCCCccccCCcc
Q 005614 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPL 93 (688)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~~~~~~rk~i~~n~~~~~~f~v~~ 93 (688)
-+|||+.+|..||+-. ++-.|+++..|.+-+....+-++|--| |-.||-+.
T Consensus 32 ~~pdY~~vI~~PmdL~--tI~~kl~~~~Y~s~~ef~~Dv~li~~N---a~~yN~~~ 82 (112)
T cd05528 32 EVPDYYEIIKQPMDLQ--TILQKLDTHQYLTAKDFLKDIDLIVTN---ALEYNPDR 82 (112)
T ss_pred ccCcHHHHHcCCCCHH--HHHHHHcCCCcCCHHHHHHHHHHHHHH---HHHHCCCC
Confidence 3799999999999887 899999999999999988888888766 78899774
No 96
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=77.06 E-value=0.37 Score=43.97 Aligned_cols=55 Identities=15% Similarity=0.138 Sum_probs=47.7
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCccccccccccCCCccccCCccceee
Q 005614 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (688)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~~~~~~rk~i~~n~~~~~~f~v~~~~~~ 97 (688)
.+|+|+.+|..|++.. ++-.+|++..|.+.+....+-+.|.-| |.+||-++-.+.
T Consensus 35 ~~pdYy~iIk~PmdL~--tI~~kl~~~~Y~s~~ef~~D~~l~~~N---a~~yN~~~s~i~ 89 (105)
T cd05515 35 EYPDYYDVIKKPIDME--KIRSKIEGNQYQSLDDMVSDFVLMFDN---ACKYNEPDSQIY 89 (105)
T ss_pred cCCcHHHHcCCCcCHH--HHHHHHccCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 3689999999999887 899999999999999998888888777 889998876655
No 97
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=75.93 E-value=0.43 Score=43.75 Aligned_cols=55 Identities=11% Similarity=0.149 Sum_probs=47.0
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCccccccccccCCCccccCCccceee
Q 005614 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (688)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~~~~~~rk~i~~n~~~~~~f~v~~~~~~ 97 (688)
.+|||+..|..|++.. ++-.+|++..|.+-+....+-..|--| |-.||-++-.+.
T Consensus 36 ~~pdYy~iI~~Pmdl~--tI~~kl~~~~Y~s~~ef~~D~~li~~N---a~~yN~~~s~i~ 90 (107)
T cd05516 36 ELPEYYELIRKPVDFK--KIKERIRNHKYRSLEDLEKDVMLLCQN---AQTFNLEGSLIY 90 (107)
T ss_pred cCCCHHHHcCCCCCHH--HHHHHHccCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 3699999999999887 899999999999988888888887766 778998876555
No 98
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=74.59 E-value=14 Score=37.61 Aligned_cols=54 Identities=20% Similarity=0.239 Sum_probs=15.8
Q ss_pred CCCCCCCCCCCCCChhHHHHHHhhhhhhhhhHHHHHHH-HhhhcCCCChHHHHHHHHHHHHH
Q 005614 579 HHEGESAPSERQVSPDKLYRAALLRNRFADTILKAREK-ALEKGEKRDPEKLRIEREELERR 639 (688)
Q Consensus 579 ~~~~~~~~~~~~~sp~k~~raa~l~~rfadti~ka~~k-~l~~g~k~dp~~~~~e~~~~~~~ 639 (688)
..-||++-+-. +-+.+|-..|--.+-..|+. .+....+.||..+.+..|.++..
T Consensus 34 ~~yGWyil~~~-------I~ly~l~qkl~~~~r~~r~~~~~~~~~~~dpd~v~~rqEa~eaA 88 (190)
T PF06936_consen 34 SSYGWYILFGC-------ILLYLLWQKLSPSFRSLRERRQLDAAAKKDPDVVVRRQEAMEAA 88 (190)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhhhhhhcChhHHHHHHHHHHHH
Confidence 55789874221 22334444444333222222 22233467888876666555533
No 99
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=74.34 E-value=2.8 Score=49.51 Aligned_cols=12 Identities=42% Similarity=0.351 Sum_probs=7.7
Q ss_pred CCCHHHHHHHHH
Q 005614 405 ALSDDTLFALRK 416 (688)
Q Consensus 405 ~L~~~TL~eL~~ 416 (688)
-|..-||+.|++
T Consensus 1192 flthvtlrrlrd 1203 (1463)
T PHA03308 1192 FLTHVTLRRLRD 1203 (1463)
T ss_pred hhhhhhHHHHHH
Confidence 355667777766
No 100
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=74.30 E-value=12 Score=43.28 Aligned_cols=19 Identities=42% Similarity=0.557 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005614 637 ERRHREEKARLQAEAKAAE 655 (688)
Q Consensus 637 ~~~~~~~~~~~~~~~~~a~ 655 (688)
++++++|+.|++|++++++
T Consensus 214 ~~~~~~e~kr~Eaerk~~~ 232 (591)
T KOG2412|consen 214 ERKERSEEKREEAERKRRA 232 (591)
T ss_pred HHHHHHHhhhhhhHHHHHH
Confidence 4566777788888777655
No 101
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=74.14 E-value=13 Score=39.67 Aligned_cols=7 Identities=43% Similarity=0.491 Sum_probs=2.9
Q ss_pred Ccchhcc
Q 005614 477 PPVAIEK 483 (688)
Q Consensus 477 ~Pv~iek 483 (688)
+.|.|.+
T Consensus 271 sevqiak 277 (445)
T KOG2891|consen 271 SEVQIAK 277 (445)
T ss_pred hHHHHHH
Confidence 3444443
No 102
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=74.00 E-value=2.1e+02 Score=34.49 Aligned_cols=26 Identities=42% Similarity=0.464 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005614 635 ELERRHREEKARLQAEAKAAEEARRK 660 (688)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~a~~~~~~ 660 (688)
|+++..+.-.|-++.++++++++.++
T Consensus 535 e~ekl~~khqa~~ekeak~~~a~EkK 560 (948)
T KOG0577|consen 535 ELEKLARKHQAIGEKEAKAASAEEKK 560 (948)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 45555666666666666666655443
No 103
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=73.98 E-value=11 Score=41.23 Aligned_cols=8 Identities=38% Similarity=0.779 Sum_probs=7.0
Q ss_pred CCcEEEEc
Q 005614 396 EDELEIDI 403 (688)
Q Consensus 396 ~dEIEIDI 403 (688)
.|.|+|+|
T Consensus 110 ~D~v~i~i 117 (321)
T PF07946_consen 110 KDRVTIEI 117 (321)
T ss_pred CCeEEEEE
Confidence 78888888
No 104
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=73.65 E-value=0.39 Score=44.12 Aligned_cols=56 Identities=9% Similarity=0.033 Sum_probs=48.1
Q ss_pred CCCCchhHhhhcccccCCCCCcccccCccccccccCccccccccccCCCccccCCccceee
Q 005614 37 GFVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (688)
Q Consensus 37 ~~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~~~~~~rk~i~~n~~~~~~f~v~~~~~~ 97 (688)
..+|||+.+|..|++.. ++-.+|.+..|.+-+.-..+-..|.-| +-.||.+.-.+.
T Consensus 36 ~~~pdYy~~I~~P~dL~--tI~~kl~~~~Y~s~~ef~~D~~l~f~N---a~~yn~~~S~i~ 91 (106)
T cd05525 36 KKNPDYYERITDPVDLS--TIEKQILTGYYKTPEAFDSDMLKVFRN---AEKYYGRKSPIG 91 (106)
T ss_pred ccCCchhhhCCCCcCHH--HHHHHHcCCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 35799999999999887 899999999999999888888888766 778998876666
No 105
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=73.23 E-value=0.51 Score=42.41 Aligned_cols=54 Identities=13% Similarity=0.190 Sum_probs=46.3
Q ss_pred CCchhHhhhcccccCCCCCcccccCccccccccCccccccccccCCCccccCCccceee
Q 005614 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (688)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~~~~~~rk~i~~n~~~~~~f~v~~~~~~ 97 (688)
+|+|+.+|..|++.+ ++-.||++..|.+-..-..+-+.|--| |..||-+.-.++
T Consensus 30 ~p~Y~~iIk~PmdL~--tI~~kl~~~~Y~s~~ef~~D~~li~~N---a~~yN~~~s~i~ 83 (97)
T cd05503 30 VPGYRKIIKKPMDFS--TIREKLESGQYKTLEEFAEDVRLVFDN---CETFNEDDSEVG 83 (97)
T ss_pred cCCHHHHhCCCCCHH--HHHHHHccCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 699999999999987 899999999999998888777777666 788998875555
No 106
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=72.78 E-value=0.58 Score=43.39 Aligned_cols=51 Identities=12% Similarity=0.034 Sum_probs=44.2
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCccccccccccCCCccccCCcc
Q 005614 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPL 93 (688)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~~~~~~rk~i~~n~~~~~~f~v~~ 93 (688)
-+|||+.+|..||+.+ ++-.++.+..|.+-+.-..+-+.|--| |-.||-+.
T Consensus 37 ~~pdY~~iIk~PmdL~--tI~~kl~~~~Y~s~~ef~~D~~Li~~N---~~~yN~~~ 87 (112)
T cd05510 37 EAPDYYDIIKKPMDLG--TMLKKLKNLQYKSKAEFVDDLNLIWKN---CLLYNSDP 87 (112)
T ss_pred hcCCHHHHhcCccCHH--HHHHHHhCCCCCCHHHHHHHHHHHHHH---HHHHCCCC
Confidence 3799999999999987 899999999999998888888877766 88899763
No 107
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=72.52 E-value=14 Score=42.49 Aligned_cols=19 Identities=42% Similarity=0.578 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005614 666 AAEAKRKRELEREAARQAL 684 (688)
Q Consensus 666 ~~~~~~~~e~~r~~~r~~l 684 (688)
+++.|+++|-|||.+|+.|
T Consensus 348 ~e~er~~~~ee~e~~R~~l 366 (460)
T KOG1363|consen 348 LEKERKEEEEERETARQLL 366 (460)
T ss_pred HhhhhhhHHHHHHHHHHHH
Confidence 4444555577888888544
No 108
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=72.45 E-value=0.43 Score=43.05 Aligned_cols=55 Identities=13% Similarity=0.153 Sum_probs=46.3
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCccccccccccCCCccccCCccceee
Q 005614 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (688)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~~~~~~rk~i~~n~~~~~~f~v~~~~~~ 97 (688)
..|+|+..|..|++.. ++-.++++..|.|...-..+-+.|.-| |..||-+.-.+.
T Consensus 34 ~~p~Y~~~I~~Pmdl~--~I~~kl~~~~Y~s~~ef~~D~~li~~N---a~~yn~~~s~i~ 88 (102)
T cd05498 34 GLHDYHDIIKHPMDLS--TIKKKLDNREYADAQEFAADVRLMFSN---CYKYNPPDHPVH 88 (102)
T ss_pred CCCcHHHHccCCCcHH--HHHHHHccCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 4699999999999887 899999999999988888888888777 788997764444
No 109
>smart00297 BROMO bromo domain.
Probab=72.03 E-value=0.55 Score=42.08 Aligned_cols=53 Identities=11% Similarity=0.180 Sum_probs=45.2
Q ss_pred CCchhHhhhcccccCCCCCcccccCccccccccCccccccccccCCCccccCCcccee
Q 005614 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVL 96 (688)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~~~~~~rk~i~~n~~~~~~f~v~~~~~ 96 (688)
.|+|+..|..|++.. ++-.||++..|.+.+.-..+-+.|.-| |..||-+.-.+
T Consensus 37 ~p~Y~~~i~~P~dl~--~I~~kl~~~~Y~s~~ef~~D~~li~~N---a~~~n~~~s~~ 89 (107)
T smart00297 37 APDYYDIIKKPMDLS--TIKKKLENGKYSSVEEFVADVQLMFSN---AKTYNGPDSEV 89 (107)
T ss_pred ccCHHHHhcCCCCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHH
Confidence 589999999999887 899999999999999998888888777 77888665333
No 110
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=71.64 E-value=2.8 Score=49.41 Aligned_cols=9 Identities=44% Similarity=0.708 Sum_probs=5.2
Q ss_pred CChHHHHHH
Q 005614 624 RDPEKLRIE 632 (688)
Q Consensus 624 ~dp~~~~~e 632 (688)
-||-|+-||
T Consensus 1352 sdpskipqe 1360 (1463)
T PHA03308 1352 SDPSKIPQE 1360 (1463)
T ss_pred CCcccchHH
Confidence 456666555
No 111
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=70.60 E-value=0.62 Score=42.29 Aligned_cols=55 Identities=11% Similarity=0.170 Sum_probs=46.9
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCccccccccccCCCccccCCccceee
Q 005614 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (688)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~~~~~~rk~i~~n~~~~~~f~v~~~~~~ 97 (688)
..|+|+.+|..|++.. ++-.|+.+..|.+.+....+-+.|.-| |..||-+.-.+.
T Consensus 35 ~~p~Y~~~I~~P~dL~--tI~~kl~~~~Y~s~~~f~~D~~li~~N---a~~yN~~~s~~~ 89 (103)
T cd05500 35 NIPHYPTIIKKPMDLG--TIERKLKSNVYTSVEEFTADFNLMVDN---CLTFNGPEHPVS 89 (103)
T ss_pred cCCCHHHHhcCCCCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 5699999999999887 899999999999999988888888777 788997764444
No 112
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=70.44 E-value=19 Score=39.15 Aligned_cols=7 Identities=43% Similarity=0.786 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 005614 639 RHREEKA 645 (688)
Q Consensus 639 ~~~~~~~ 645 (688)
.+++|.+
T Consensus 132 kqqeEqa 138 (387)
T COG3064 132 KQQEEQA 138 (387)
T ss_pred HHHHHHH
Confidence 3344444
No 113
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=70.32 E-value=52 Score=33.93 Aligned_cols=77 Identities=36% Similarity=0.487 Sum_probs=36.9
Q ss_pred hhhhhhhhhHHHHHHHH----------hh-hc-----CCCChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005614 601 LLRNRFADTILKAREKA----------LE-KG-----EKRDPEKLRIER--EELERRHREEKARLQAEAKAAEEARRKAE 662 (688)
Q Consensus 601 ~l~~rfadti~ka~~k~----------l~-~g-----~k~dp~~~~~e~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 662 (688)
+.+.|--|.|..|+... |. .| +.-||+...+-- -...--..-|+-|.+-+.+|-++.++.+|
T Consensus 111 ~~rkr~~~~y~~ak~~~~~~~~ekkkklkKegkpt~ieedDp~lfk~av~~~~mklfae~erkRk~~e~r~~~eRkr~re 190 (250)
T KOG1150|consen 111 KIRKRCLDVYTAAKNRLEKVMSEKKKKLKKEGKPTIIEEDDPELFKQAVYKQVMKLFAELERKRKELEARANEERKRQRE 190 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 35567777777666422 21 12 234677655431 11111111222333344455555555556
Q ss_pred HHHHHHHHHHHHHHH
Q 005614 663 AEAAAEAKRKRELER 677 (688)
Q Consensus 663 ~~~~~~~~~~~e~~r 677 (688)
+|-+++.+++|++|=
T Consensus 191 ~eIeaeek~Kr~~E~ 205 (250)
T KOG1150|consen 191 EEIEAEEKRKREREW 205 (250)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555666556665553
No 114
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=70.31 E-value=16 Score=38.38 Aligned_cols=33 Identities=21% Similarity=0.182 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005614 626 PEKLRIEREELERRHREEKARLQAEAKAAEEAR 658 (688)
Q Consensus 626 p~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~~ 658 (688)
-+++..+.+++-...+++.++|-+++++..++.
T Consensus 35 ~~~~~~~~~~~l~~Ar~eA~~Ii~~A~~~a~~~ 67 (255)
T TIGR03825 35 LADEEQEFEQILEKAEAEAAQIIEQAEAQAAAI 67 (255)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666777777766665544443
No 115
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=69.66 E-value=19 Score=38.53 Aligned_cols=15 Identities=47% Similarity=0.598 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 005614 633 REELERRHREEKARL 647 (688)
Q Consensus 633 ~~~~~~~~~~~~~~~ 647 (688)
+.|||+...|++.|.
T Consensus 333 kqeleqmaeeekkr~ 347 (445)
T KOG2891|consen 333 KQELEQMAEEEKKRE 347 (445)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444333
No 116
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=69.22 E-value=0.57 Score=42.52 Aligned_cols=55 Identities=11% Similarity=0.122 Sum_probs=47.2
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCccccccccccCCCccccCCccceee
Q 005614 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (688)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~~~~~~rk~i~~n~~~~~~f~v~~~~~~ 97 (688)
..|+|+.+|..|++.. ++-.+|++..|.+...-..+-+.|.-| |.+||-|.-.+.
T Consensus 35 ~~pdYy~iIk~Pmdl~--~I~~kl~~~~Y~s~~~f~~D~~li~~N---a~~yn~~~s~i~ 89 (103)
T cd05519 35 LYPDYYVIIKRPIALD--QIKRRIEGRAYKSLEEFLEDFHLMFAN---ARTYNQEGSIVY 89 (103)
T ss_pred CCcCHHHHcCCCcCHH--HHHHHHccCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 4699999999999887 899999999999999988888888767 788998875555
No 117
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=68.77 E-value=43 Score=32.99 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005614 666 AAEAKRKRELEREAARQALQ 685 (688)
Q Consensus 666 ~~~~~~~~e~~r~~~r~~lq 685 (688)
.++++..-+.|++.|...|+
T Consensus 102 ~~~A~~~Ie~Ek~~Al~elr 121 (154)
T PRK06568 102 KSDAIQLIQNQKSTASKELQ 121 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444555667777766665
No 118
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=67.72 E-value=32 Score=40.13 Aligned_cols=15 Identities=40% Similarity=0.541 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q 005614 645 ARLQAEAKAAEEARR 659 (688)
Q Consensus 645 ~~~~~~~~~a~~~~~ 659 (688)
..+.++-+++++.|+
T Consensus 245 ~~~dee~k~i~~~rk 259 (782)
T PF07218_consen 245 KELDEEHKEIEEKRK 259 (782)
T ss_pred hHHhHHHHHHHHHHH
Confidence 334444555554444
No 119
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=65.18 E-value=36 Score=41.47 Aligned_cols=6 Identities=17% Similarity=0.052 Sum_probs=2.3
Q ss_pred HHHHHH
Q 005614 203 AMLMKQ 208 (688)
Q Consensus 203 ~~~~k~ 208 (688)
.+|+++
T Consensus 149 tPWlkF 154 (988)
T KOG2072|consen 149 TPWLKF 154 (988)
T ss_pred HHHHHH
Confidence 334333
No 120
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=64.82 E-value=40 Score=33.84 Aligned_cols=26 Identities=58% Similarity=0.734 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005614 627 EKLRIEREELERRHREEKARLQAEAK 652 (688)
Q Consensus 627 ~~~~~e~~~~~~~~~~~~~~~~~~~~ 652 (688)
|+.++++|+.+++.+++.++..++..
T Consensus 43 E~ER~ekEE~er~~ree~~~k~~Ee~ 68 (171)
T PF05672_consen 43 EQERLEKEEQERRKREELARKLAEER 68 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555544443
No 121
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=64.37 E-value=3.5 Score=50.35 Aligned_cols=46 Identities=57% Similarity=0.684 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005614 628 KLRIEREELERRHREEKARLQAEAKAAEEARRKAEAEAAAEAKRKRELEREAARQ 682 (688)
Q Consensus 628 ~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~r~~~r~ 682 (688)
||-+.+|| +-|++|+|||.+|.|++.|.++. |..++||+||++.|+
T Consensus 579 KLAkKRee-----~~ek~RReaEq~~reerERer~~----e~~rerer~~~~~r~ 624 (982)
T PF03154_consen 579 KLAKKREE-----RVEKARREAEQRAREERERERER----EREREREREREAERA 624 (982)
T ss_pred HHhhhhHH-----HHHHHHhhhhccchhhhhhcccc----cchhhhhhhhhhhhh
Confidence 55554443 24578888888887766654332 223444444444443
No 122
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=63.89 E-value=19 Score=41.31 Aligned_cols=11 Identities=18% Similarity=0.419 Sum_probs=8.0
Q ss_pred HHHHHHHHhcC
Q 005614 678 EAARQALQMVK 688 (688)
Q Consensus 678 ~~~r~~lq~m~ 688 (688)
=+.|.+|+-||
T Consensus 450 y~rrkqlklme 460 (708)
T KOG3654|consen 450 YERRKQLKLME 460 (708)
T ss_pred HHHHHHHHHHH
Confidence 35688888775
No 123
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=63.55 E-value=29 Score=40.35 Aligned_cols=10 Identities=40% Similarity=0.488 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 005614 674 ELEREAARQA 683 (688)
Q Consensus 674 e~~r~~~r~~ 683 (688)
|.||++++++
T Consensus 261 eee~ke~e~~ 270 (591)
T KOG2412|consen 261 EEERKEAEEQ 270 (591)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 124
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=63.48 E-value=43 Score=41.13 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=14.4
Q ss_pred CCHHHHHHHHHHHHhhcccChHHHHHHHh
Q 005614 359 MTNEEKRILSTELEALLEELPESIIDFLK 387 (688)
Q Consensus 359 mT~eEK~~L~~~I~~L~~E~l~~Iv~IIk 387 (688)
++..+-..|-+.|..|-.+....+..|++
T Consensus 224 ~ep~~~~~ln~~l~~l~~~~~~~~~~il~ 252 (782)
T PRK00409 224 IEPQSVVELNNEIRELRNKEEQEIERILK 252 (782)
T ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555544444444443
No 125
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=63.27 E-value=0.89 Score=40.73 Aligned_cols=55 Identities=13% Similarity=0.132 Sum_probs=45.9
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCccccccccccCCCccccCCccceee
Q 005614 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (688)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~~~~~~rk~i~~n~~~~~~f~v~~~~~~ 97 (688)
.+|+|++.|..|++.. ++-.|+.+..|.+.+.-..+-+.|--| |..||-+.-.+.
T Consensus 31 ~~p~Y~~~I~~P~dl~--tI~~kL~~~~Y~s~~ef~~D~~li~~N---a~~yn~~~s~i~ 85 (99)
T cd05506 31 GLPDYFDIIKKPMDLG--TVKKKLEKGEYSSPEEFAADVRLTFAN---AMRYNPPGNDVH 85 (99)
T ss_pred CCCCHHHHHcCCCCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 3699999999999887 899999999999988887777777666 788997765554
No 126
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=62.68 E-value=22 Score=38.80 Aligned_cols=10 Identities=10% Similarity=0.298 Sum_probs=6.5
Q ss_pred hhhhhHHHHH
Q 005614 605 RFADTILKAR 614 (688)
Q Consensus 605 rfadti~ka~ 614 (688)
.|+|.+.+.+
T Consensus 242 ~l~D~~~~~~ 251 (321)
T PF07946_consen 242 YLIDKLARFK 251 (321)
T ss_pred HHHHHhheee
Confidence 3788887443
No 127
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=60.97 E-value=1.3 Score=40.70 Aligned_cols=55 Identities=13% Similarity=0.140 Sum_probs=45.2
Q ss_pred CCCchhHhhhcccccCCCCCcccccC---ccccccccCccccccccccCCCccccCCccceee
Q 005614 38 FVPDYRHAVETMAESEGFGSSGRVDT---EMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (688)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~---~~~~s~~~~~~~rk~i~~n~~~~~~f~v~~~~~~ 97 (688)
-.|+|+.+|..|++.. ++-.++++ ..|.+.+.-..+-+.|.-| |-.||-|.-.+.
T Consensus 32 ~~p~Y~~iI~~PmdL~--tI~~kL~~~~~~~Y~s~~~f~~D~~li~~N---a~~yN~~~s~i~ 89 (109)
T cd05502 32 SVPNYYKIIKTPMDLS--LIRKKLQPKSPQHYSSPEEFVADVRLMFKN---CYKFNEEDSEVA 89 (109)
T ss_pred CCCCHHHHCCCCccHH--HHHHHHhcCCCCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 4799999999999887 88999998 5888888887787887766 788998864444
No 128
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=60.76 E-value=84 Score=31.07 Aligned_cols=12 Identities=17% Similarity=0.551 Sum_probs=7.2
Q ss_pred hhHHHHHHHHhh
Q 005614 608 DTILKAREKALE 619 (688)
Q Consensus 608 dti~ka~~k~l~ 619 (688)
.-|+..|++...
T Consensus 36 ~~iLe~R~~~I~ 47 (155)
T PRK06569 36 EEIFNNRQTNIQ 47 (155)
T ss_pred HHHHHHHHHHHH
Confidence 345667776554
No 129
>PF05110 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 This family consist of family member 1 (proto-oncogene AF4), family member 2 or FMR2 (Fragile X E mental retardation syndrome), family member 3 or LAF4 (lymphoid nuclear protein related to AF4) and family member 4 (protein lilliputian). Lilliputian is a Drosophila AF4 protein homologue which contains an AT-hook domain. It represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila []. These proteins have been linked to Homo sapiens diseases such as acute lymphoblastic leukemia and mental retardation [].
Probab=60.30 E-value=11 Score=47.98 Aligned_cols=9 Identities=22% Similarity=0.394 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 005614 109 LELKLKTDL 117 (688)
Q Consensus 109 L~~Rl~~eL 117 (688)
|=.|+..+|
T Consensus 47 LssriQ~mL 55 (1191)
T PF05110_consen 47 LSSRIQNML 55 (1191)
T ss_pred HHHHHHHHh
Confidence 333444443
No 130
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=60.09 E-value=72 Score=32.53 Aligned_cols=39 Identities=28% Similarity=0.383 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 005614 646 RLQAEAKAAEEARRKAEAEAAA----EAKRKRELEREAARQAL 684 (688)
Q Consensus 646 ~~~~~~~~a~~~~~~~~~~~~~----~~~~~~e~~r~~~r~~l 684 (688)
.+.+...|.++||++.++|..+ .+++++++|+|..|++|
T Consensus 77 ~v~~rqEa~eaAR~RmQEE~dakA~~~kEKq~q~EEEKRrqki 119 (190)
T PF06936_consen 77 VVVRRQEAMEAARRRMQEELDAKAEEYKEKQKQEEEEKRRQKI 119 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555554322 33345555555666665
No 131
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=60.06 E-value=33 Score=39.80 Aligned_cols=7 Identities=29% Similarity=0.449 Sum_probs=3.3
Q ss_pred hhhhhhh
Q 005614 603 RNRFADT 609 (688)
Q Consensus 603 ~~rfadt 609 (688)
|.|=|+-
T Consensus 204 KEreaee 210 (489)
T PF05262_consen 204 KEREAEE 210 (489)
T ss_pred HHHHhHH
Confidence 5554443
No 132
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=59.76 E-value=76 Score=31.27 Aligned_cols=23 Identities=26% Similarity=0.185 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 005614 664 EAAAEAKRKRELEREAARQALQM 686 (688)
Q Consensus 664 ~~~~~~~~~~e~~r~~~r~~lq~ 686 (688)
++.++++..-++-.+.|++..+.
T Consensus 89 ea~~eA~~ea~r~~~~A~~~Ie~ 111 (154)
T PRK06568 89 EKTKEIEEFLEHKKSDAIQLIQN 111 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455444443
No 133
>PF05110 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 This family consist of family member 1 (proto-oncogene AF4), family member 2 or FMR2 (Fragile X E mental retardation syndrome), family member 3 or LAF4 (lymphoid nuclear protein related to AF4) and family member 4 (protein lilliputian). Lilliputian is a Drosophila AF4 protein homologue which contains an AT-hook domain. It represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila []. These proteins have been linked to Homo sapiens diseases such as acute lymphoblastic leukemia and mental retardation [].
Probab=58.87 E-value=12 Score=47.59 Aligned_cols=9 Identities=78% Similarity=0.733 Sum_probs=4.0
Q ss_pred CCCCCCCCC
Q 005614 507 SDSDSGSSS 515 (688)
Q Consensus 507 S~SdS~sSs 515 (688)
|||+|+|||
T Consensus 452 SDSESESSS 460 (1191)
T PF05110_consen 452 SDSESESSS 460 (1191)
T ss_pred ccccccccc
Confidence 444444443
No 134
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=58.80 E-value=1.7 Score=40.18 Aligned_cols=72 Identities=17% Similarity=0.129 Sum_probs=56.6
Q ss_pred CCchhHhhhcccccCCCCCcccccCccccccccCccccccccccCCCccccCCccceeecCcCCHHHHHHHHHHHHHHHH
Q 005614 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELKLKTDLE 118 (688)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~~~~~~rk~i~~n~~~~~~f~v~~~~~~~s~~s~~e~~~L~~Rl~~eLe 118 (688)
.|+|+..|-.||+-+ ++-.++.++.|.+-+....+-+.|--| +..||-+.-.+. .-.++|.+=-.+||.
T Consensus 36 ~pdY~~iIk~PmDL~--tI~~kl~~~~Y~s~~ef~~Dv~LI~~N---~~~yNg~~s~~~------~~A~~l~~d~~~el~ 104 (109)
T cd05492 36 LPKRRRLIHTHLDVA--DIQEKINSEKYTSLEEFKADALLLLHN---TAIFHGADSEQY------DAARWLYRDTCHDLR 104 (109)
T ss_pred CCCHHHHhCCCCcHH--HHHHHHHcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH------HHHHHHHHHHHHHHH
Confidence 799999999999988 899999999999999998888888767 677886654443 344566666666666
Q ss_pred HHH
Q 005614 119 QVR 121 (688)
Q Consensus 119 qvR 121 (688)
.+|
T Consensus 105 Ei~ 107 (109)
T cd05492 105 ELR 107 (109)
T ss_pred HHh
Confidence 554
No 135
>PLN02316 synthase/transferase
Probab=58.32 E-value=24 Score=44.47 Aligned_cols=16 Identities=31% Similarity=0.655 Sum_probs=7.8
Q ss_pred CcEEEEccCCCHHHHH
Q 005614 397 DELEIDIDALSDDTLF 412 (688)
Q Consensus 397 dEIEIDId~L~~~TL~ 412 (688)
..+-+|.+..+++.+.
T Consensus 99 ~~~~~~~~~~~~~~~~ 114 (1036)
T PLN02316 99 ESISTDMDGIDDDSLD 114 (1036)
T ss_pred ccccccccccchHHHH
Confidence 3444555555555443
No 136
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=58.14 E-value=1.2 Score=40.65 Aligned_cols=55 Identities=11% Similarity=0.007 Sum_probs=47.4
Q ss_pred CCCchhHhhhcccccCCCCCcccccCccccccccCccccccccccCCCccccCCccceee
Q 005614 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (688)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~~~~~~rk~i~~n~~~~~~f~v~~~~~~ 97 (688)
..|+|+..|..|++.. ++-.|+.+..|.+...-..+-++|.-| +..||-|.-.+.
T Consensus 36 ~~pdYy~~I~~Pmdl~--tI~~kl~~~~Y~s~~~f~~D~~li~~N---a~~yn~~~s~i~ 90 (104)
T cd05522 36 REPEYYQEISNPISLD--DIKKKVKRRKYKSFDQFLNDLNLMFEN---AKLYNENDSQEY 90 (104)
T ss_pred ccCcHHHHhCCCcCHH--HHHHHHccCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 4589999999999887 899999999999999988888888777 778998875555
No 137
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=57.49 E-value=2.9 Score=50.23 Aligned_cols=68 Identities=15% Similarity=0.154 Sum_probs=53.0
Q ss_pred cccccccCCCchhhhccCCCCHHHHHHHHhCCCC--------------C----------CHHH------HHHHHHHhhhh
Q 005614 228 PVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQY--------------S----------DPLA------FAADVRLTFSN 277 (688)
Q Consensus 228 PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y--------------~----------s~~e------F~~DvrLIf~N 277 (688)
++| +..+|.|..+...|.+|+|++..|.+..| . ++.+ ..+-+.+|-.|
T Consensus 89 ~~d--~~~pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~~i~~a 166 (1113)
T KOG0644|consen 89 MLD--KPIPPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAPSIGCA 166 (1113)
T ss_pred CcC--CCCCcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCcccccceeccCCcchhhhhcCcccccc
Confidence 445 33789999999999999999999999877 2 3333 66778899999
Q ss_pred hhhcCCCCCHHHHHHHHHHHH
Q 005614 278 AMTYNPPQNDVHIMADTLRKY 298 (688)
Q Consensus 278 A~~YN~~gs~V~~~A~~L~~~ 298 (688)
|..+|.||+ +++-++.+.++
T Consensus 167 t~~~akPgt-mvqkmk~ikrL 186 (1113)
T KOG0644|consen 167 TFSIAKPGT-MVQKMKNIKRL 186 (1113)
T ss_pred eeeecCcHH-HHHHHHHHHHH
Confidence 999999999 55555554444
No 138
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=56.68 E-value=1.6 Score=37.63 Aligned_cols=52 Identities=13% Similarity=0.140 Sum_probs=43.9
Q ss_pred CCCCchhHhhhcccccCCCCCcccccCccccccccCccccccccccCCCccccCCcc
Q 005614 37 GFVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPL 93 (688)
Q Consensus 37 ~~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~~~~~~rk~i~~n~~~~~~f~v~~ 93 (688)
...|+|+..|..|++.. ++-.|++++.|.+...-..+-+.|.-| |..||-+.
T Consensus 30 ~~~~~Y~~~i~~P~~l~--~I~~kl~~~~Y~s~~~f~~D~~li~~N---a~~~n~~~ 81 (99)
T cd04369 30 KEAPDYYEVIKNPMDLS--TIKKKLKNGEYKSLEEFEADVRLIFSN---AKTYNGPG 81 (99)
T ss_pred hcCCCHHHHHhCcccHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCC
Confidence 46899999999999887 899999999999988888888887777 67788554
No 139
>KOG3375 consensus Phosphoprotein/predicted coiled-coil protein [General function prediction only]
Probab=55.99 E-value=48 Score=32.40 Aligned_cols=57 Identities=33% Similarity=0.430 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 005614 629 LRIEREELERRHREEK-ARLQAEAKAAEEARRKAEA----EAAAEAKRKRELEREAARQALQ 685 (688)
Q Consensus 629 ~~~e~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~e~~r~~~r~~lq 685 (688)
-|+|+|++|++...+. -+|...-+--++..-.+.. ...+|+.++||.|++||+-+-+
T Consensus 108 SRRereeiEKQrA~eRYmklh~aGKTeqAkaDLaRlalir~qReeaa~kre~ekkaa~~~tk 169 (174)
T KOG3375|consen 108 SRREREEIEKQRAKERYMKLHLAGKTEQAKADLARLALIRQQREEAAAKREAEKKAADVATK 169 (174)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 5888999887654443 4555544443332222221 1156677788889998887654
No 140
>KOG2133 consensus Transcriptional corepressor Atrophin-1/DRPLA [General function prediction only]
Probab=54.82 E-value=7.2 Score=47.68 Aligned_cols=44 Identities=48% Similarity=0.627 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005614 638 RRHREEKARLQAEAKAAEEARRKAEAEAAAEAKRKRELEREAARQA 683 (688)
Q Consensus 638 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~r~~~r~~ 683 (688)
+...+++|+.+|+++++|+.++.+ +++.+..++||.||++.|-+
T Consensus 816 ~~~~~~kak~aa~~ra~er~~~~r--~re~e~~~e~e~~~~aersa 859 (1229)
T KOG2133|consen 816 RSNVEEKAKRAAEQRARERSERER--ERETELEREREVEREAERSA 859 (1229)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhh--hhhhcccccccccchHHhhh
Confidence 445678999999999998777644 44555566667777766654
No 141
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=54.39 E-value=70 Score=37.52 Aligned_cols=8 Identities=38% Similarity=0.928 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 005614 414 LRKLLDDY 421 (688)
Q Consensus 414 L~~~V~~~ 421 (688)
|+.++.+|
T Consensus 422 LKnlFSKy 429 (940)
T KOG4661|consen 422 LKNLFSKY 429 (940)
T ss_pred HHHHHHHh
Confidence 44444333
No 142
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=54.32 E-value=1.7e+02 Score=28.01 Aligned_cols=18 Identities=28% Similarity=0.193 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005614 668 EAKRKRELEREAARQALQ 685 (688)
Q Consensus 668 ~~~~~~e~~r~~~r~~lq 685 (688)
+++..-+.+.+.|+..|.
T Consensus 96 ~A~~~~~~~~~~a~~~l~ 113 (141)
T PRK08476 96 AKKAELESKYEAFAKQLA 113 (141)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444555555555443
No 143
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=54.12 E-value=56 Score=40.06 Aligned_cols=8 Identities=25% Similarity=0.110 Sum_probs=4.2
Q ss_pred hhHHHHHH
Q 005614 608 DTILKARE 615 (688)
Q Consensus 608 dti~ka~~ 615 (688)
+.|-.|++
T Consensus 497 ~ii~~A~~ 504 (771)
T TIGR01069 497 FIIEQAKT 504 (771)
T ss_pred HHHHHHHH
Confidence 45555555
No 144
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=53.15 E-value=1.8e+02 Score=29.09 Aligned_cols=15 Identities=13% Similarity=0.299 Sum_probs=8.9
Q ss_pred hhhhhHHHHHHHHhh
Q 005614 605 RFADTILKAREKALE 619 (688)
Q Consensus 605 rfadti~ka~~k~l~ 619 (688)
++--.++..|+....
T Consensus 47 kPI~~~l~~R~~~I~ 61 (184)
T CHL00019 47 GVLSDLLDNRKQTIL 61 (184)
T ss_pred hHHHHHHHHHHHHHH
Confidence 445556667766554
No 145
>PF12544 LAM_C: Lysine-2,3-aminomutase ; PDB: 2A5H_D.
Probab=51.07 E-value=4.2 Score=38.55 Aligned_cols=45 Identities=27% Similarity=0.437 Sum_probs=22.7
Q ss_pred CCCCCCCC-CCchhHhhhcccccCCCCCcccccCccccccccCccccccccccCCC
Q 005614 31 SKGHSSGF-VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDG 85 (688)
Q Consensus 31 ~~~~~~~~-~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~~~~~~rk~i~~n~~~ 85 (688)
-+||-||| ||+| +|+.||.-+ --.|.-+|..+.. ..+.+..|..|
T Consensus 4 LRGhtSGlAvPty--VvD~PGGgG----KvPl~P~Yli~~~----~~~~vlrNyeG 49 (127)
T PF12544_consen 4 LRGHTSGLAVPTY--VVDAPGGGG----KVPLMPNYLISQS----GDKVVLRNYEG 49 (127)
T ss_dssp TCTTC-GGG--EE--EEEETTTTE----EEE-----EEEEE----SSEEEEE-TTS
T ss_pred ccccccccccceE--EEECCCCCC----CcccCCceEEecC----CCEEEEECCCC
Confidence 47999999 9999 899997322 2234555554433 34566667654
No 146
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=50.84 E-value=62 Score=36.99 Aligned_cols=15 Identities=20% Similarity=0.151 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHhhc
Q 005614 361 NEEKRILSTELEALL 375 (688)
Q Consensus 361 ~eEK~~L~~~I~~L~ 375 (688)
.+++.++.+.+..|.
T Consensus 81 ~e~~~~~qqe~~~Ly 95 (429)
T PRK00247 81 EASIRELQQKQKDLN 95 (429)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555554443
No 147
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=50.18 E-value=2.3 Score=50.01 Aligned_cols=74 Identities=8% Similarity=-0.039 Sum_probs=65.4
Q ss_pred ccccCcccccccCCCchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhhhcCCCCCHHHHHHHHHHHH
Q 005614 223 WVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKY 298 (688)
Q Consensus 223 ~~F~~PVdp~~~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~gs~V~~~A~~L~~~ 298 (688)
..|..-++ ...+|+||.+++-||.+..+.+++..+.|.....|..|..+.|.|+..||.....++..+..|.+.
T Consensus 214 er~w~~~d--g~k~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~ 287 (629)
T KOG1827|consen 214 ERLWKLPD--GEKWPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEE 287 (629)
T ss_pred cccccCcc--cccccceeEeeCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCccccccc
Confidence 34444333 447999999999999999999999999999999999999999999999999999999999888664
No 148
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=49.38 E-value=11 Score=43.65 Aligned_cols=8 Identities=38% Similarity=0.393 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 005614 409 DTLFALRK 416 (688)
Q Consensus 409 ~TL~eL~~ 416 (688)
.-|+.|-+
T Consensus 541 nkLRnlak 548 (739)
T KOG2140|consen 541 NKLRNLAK 548 (739)
T ss_pred HHHHHHHH
Confidence 33333333
No 149
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=49.16 E-value=1.9e+02 Score=28.10 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005614 669 AKRKRELEREAARQALQ 685 (688)
Q Consensus 669 ~~~~~e~~r~~~r~~lq 685 (688)
++..-+.|++.++..|+
T Consensus 123 a~~~i~~ek~~a~~~l~ 139 (156)
T CHL00118 123 ATKQLEAQKEKALKSLE 139 (156)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444555555555554
No 150
>PF15437 PGBA_C: Plasminogen-binding protein pgbA C-terminal
Probab=48.61 E-value=90 Score=27.67 Aligned_cols=45 Identities=40% Similarity=0.509 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005614 636 LERRHREEKARLQAEAKAAEEARRKAEAEAAAEAKRKRELEREAARQALQM 686 (688)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~r~~~r~~lq~ 686 (688)
..||-++|+-+-.|+.+|.|=.+|..+ -.-.-|+|-|..|.||.+
T Consensus 39 ekrrLkeEkKkAKAeqrA~EfEqRake------hqErDEkElEERrKALe~ 83 (86)
T PF15437_consen 39 EKRRLKEEKKKAKAEQRAREFEQRAKE------HQERDEKELEERRKALEM 83 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhhc
Confidence 344555555555555555443222111 112334555667888754
No 151
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=48.36 E-value=1.2e+02 Score=30.15 Aligned_cols=6 Identities=67% Similarity=0.944 Sum_probs=2.4
Q ss_pred HHHHhh
Q 005614 614 REKALE 619 (688)
Q Consensus 614 ~~k~l~ 619 (688)
|.|+|+
T Consensus 53 R~kq~E 58 (157)
T PF15236_consen 53 RQKQLE 58 (157)
T ss_pred HHHHHH
Confidence 334443
No 152
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=47.81 E-value=2e+02 Score=27.51 Aligned_cols=9 Identities=33% Similarity=0.608 Sum_probs=4.4
Q ss_pred HHHHHHHHh
Q 005614 610 ILKAREKAL 618 (688)
Q Consensus 610 i~ka~~k~l 618 (688)
+++.|++..
T Consensus 32 ~l~~R~~~I 40 (156)
T PRK05759 32 ALEERQKKI 40 (156)
T ss_pred HHHHHHHHH
Confidence 445555444
No 153
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=47.24 E-value=55 Score=29.60 Aligned_cols=51 Identities=16% Similarity=0.287 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 005614 258 SGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEK 308 (688)
Q Consensus 258 ~~~Y~s~~eF~~DvrLIf~NA~~YN~~gs~V~~~A~~L~~~Fe~~~k~i~~ 308 (688)
...|.|..-|...|..|-.....++..+..+..+|..|...|++.|+.+..
T Consensus 3 ~~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~~~ 53 (101)
T PF14372_consen 3 GSSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDCNL 53 (101)
T ss_pred CCCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhHH
Confidence 346888888888888887777777777899999999999999999986543
No 154
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=46.84 E-value=13 Score=40.58 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=13.2
Q ss_pred CCCCCHHHHHHHHHHhhhhh
Q 005614 259 GQYSDPLAFAADVRLTFSNA 278 (688)
Q Consensus 259 ~~Y~s~~eF~~DvrLIf~NA 278 (688)
..|.-+.=|..|+-.+..|-
T Consensus 156 ~dY~VPk~F~dDlF~y~g~e 175 (407)
T KOG2130|consen 156 EDYSVPKYFRDDLFQYLGEE 175 (407)
T ss_pred hhcCcchhhhHHHHHhcCcc
Confidence 35777777777776666554
No 155
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=46.81 E-value=1.7e+02 Score=30.93 Aligned_cols=15 Identities=33% Similarity=0.317 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 005614 671 RKRELEREAARQALQ 685 (688)
Q Consensus 671 ~~~e~~r~~~r~~lq 685 (688)
..-+.|++.+...|+
T Consensus 108 ~~ie~Ek~~a~~~L~ 122 (250)
T PRK14474 108 EQLEREKQEFFKALQ 122 (250)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 156
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=46.55 E-value=95 Score=35.53 Aligned_cols=7 Identities=14% Similarity=0.131 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 005614 675 LEREAAR 681 (688)
Q Consensus 675 ~~r~~~r 681 (688)
.+.++.+
T Consensus 381 ~~~~~~~ 387 (429)
T PRK00247 381 AAVKAKK 387 (429)
T ss_pred HHHhhhh
Confidence 3444443
No 157
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.23 E-value=67 Score=36.35 Aligned_cols=16 Identities=31% Similarity=0.302 Sum_probs=8.1
Q ss_pred hhcCCCChHHHHHHHH
Q 005614 619 EKGEKRDPEKLRIERE 634 (688)
Q Consensus 619 ~~g~k~dp~~~~~e~~ 634 (688)
...-+.+-++.|++.+
T Consensus 361 S~~~k~kt~~~RQ~~~ 376 (440)
T KOG2357|consen 361 SKDAKAKTDKNRQRVE 376 (440)
T ss_pred hHHHHhhhhhhHHHHH
Confidence 3333455556666444
No 158
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=46.08 E-value=2.3e+02 Score=29.02 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005614 668 EAKRKRELEREAARQALQ 685 (688)
Q Consensus 668 ~~~~~~e~~r~~~r~~lq 685 (688)
+++.+-|.|++.|+.+|+
T Consensus 148 ~A~~~Ie~Ek~~a~~~Lk 165 (205)
T PRK06231 148 QARQEIEKERRELKEQLQ 165 (205)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555666666666654
No 159
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=45.21 E-value=2.3e+02 Score=27.77 Aligned_cols=19 Identities=21% Similarity=0.170 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 005614 668 EAKRKRELEREAARQALQM 686 (688)
Q Consensus 668 ~~~~~~e~~r~~~r~~lq~ 686 (688)
.++.+-+.|++.|+..|+.
T Consensus 110 ~A~~~I~~e~~~a~~el~~ 128 (167)
T PRK14475 110 MAERKIAQAEAQAAADVKA 128 (167)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666653
No 160
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=43.87 E-value=1.7e+02 Score=29.95 Aligned_cols=12 Identities=25% Similarity=0.512 Sum_probs=6.1
Q ss_pred hhHHHHHHHHhh
Q 005614 608 DTILKAREKALE 619 (688)
Q Consensus 608 dti~ka~~k~l~ 619 (688)
-.++..|++...
T Consensus 74 ~~~L~~R~~~I~ 85 (205)
T PRK06231 74 QRFLNKRKELIE 85 (205)
T ss_pred HHHHHHHHHHHH
Confidence 344556655543
No 161
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=43.31 E-value=58 Score=36.63 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005614 627 EKLRIEREELERRHREEKARLQAEAKAA 654 (688)
Q Consensus 627 ~~~~~e~~~~~~~~~~~~~~~~~~~~~a 654 (688)
.+|+++..+.|+.++|++-|..||....
T Consensus 302 a~~~r~ma~kek~~kE~kL~elAQkAR~ 329 (506)
T KOG2441|consen 302 AQLERKMAEKEKEEKEQKLRELAQKARE 329 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666654433
No 162
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=43.06 E-value=2.5e+02 Score=27.76 Aligned_cols=16 Identities=31% Similarity=0.360 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 005614 670 KRKRELEREAARQALQ 685 (688)
Q Consensus 670 ~~~~e~~r~~~r~~lq 685 (688)
+..-+.|++.|+.+|.
T Consensus 120 ~~~I~~e~~~a~~~l~ 135 (175)
T PRK14472 120 KEEIEQEKRRALDVLR 135 (175)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444445555555443
No 163
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=42.69 E-value=67 Score=35.32 Aligned_cols=15 Identities=20% Similarity=0.308 Sum_probs=6.4
Q ss_pred hhhhhhhhhHHHHHH
Q 005614 601 LLRNRFADTILKARE 615 (688)
Q Consensus 601 ~l~~rfadti~ka~~ 615 (688)
+.|.||-+-+.+-++
T Consensus 94 ~~rer~E~eL~eLke 108 (361)
T KOG3634|consen 94 IEREREEKELKELKE 108 (361)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 164
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=42.68 E-value=77 Score=34.42 Aligned_cols=7 Identities=29% Similarity=0.624 Sum_probs=4.7
Q ss_pred CCCCCCh
Q 005614 587 SERQVSP 593 (688)
Q Consensus 587 ~~~~~sp 593 (688)
||..|-|
T Consensus 126 Fd~EV~P 132 (291)
T PF06098_consen 126 FDEEVKP 132 (291)
T ss_pred hHhhhhh
Confidence 6666666
No 165
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=41.94 E-value=3.2e+02 Score=26.97 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005614 669 AKRKRELEREAARQALQ 685 (688)
Q Consensus 669 ~~~~~e~~r~~~r~~lq 685 (688)
++..-+.|++.|+..|+
T Consensus 120 a~~~i~~e~~~a~~~l~ 136 (174)
T PRK07352 120 AAADLSAEQERVIAQLR 136 (174)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444555555555554
No 166
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=41.46 E-value=2.3e+02 Score=31.91 Aligned_cols=39 Identities=33% Similarity=0.354 Sum_probs=21.2
Q ss_pred hhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Q 005614 607 ADTILKAREKALEKGEKRDPEKLRIEREELERR-----HREEKARLQAEAKAAE 655 (688)
Q Consensus 607 adti~ka~~k~l~~g~k~dp~~~~~e~~~~~~~-----~~~~~~~~~~~~~~a~ 655 (688)
||+.-.|||.+ .|++.+.++|+. +..||+-.||++++|.
T Consensus 292 ~~I~~VarENs----------~LqrQKle~e~~l~a~qeakek~~KEAqareak 335 (442)
T PF06637_consen 292 AGIERVARENS----------DLQRQKLEAEQGLQASQEAKEKAGKEAQAREAK 335 (442)
T ss_pred hhHHHHHHhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666777743 344445555543 4455555555555543
No 167
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=41.41 E-value=1.1e+02 Score=37.61 Aligned_cols=8 Identities=25% Similarity=0.430 Sum_probs=4.5
Q ss_pred hhHHHHHH
Q 005614 608 DTILKARE 615 (688)
Q Consensus 608 dti~ka~~ 615 (688)
+.|-.|++
T Consensus 502 ~ii~~A~~ 509 (782)
T PRK00409 502 NIIEEAKK 509 (782)
T ss_pred HHHHHHHH
Confidence 45555665
No 168
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=41.13 E-value=1.7e+02 Score=29.54 Aligned_cols=21 Identities=43% Similarity=0.558 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005614 628 KLRIEREELERRHREEKARLQ 648 (688)
Q Consensus 628 ~~~~e~~~~~~~~~~~~~~~~ 648 (688)
++++|+|+.+|++++|..|+.
T Consensus 36 ReQkErEE~ER~ekEE~er~~ 56 (171)
T PF05672_consen 36 REQKEREEQERLEKEEQERRK 56 (171)
T ss_pred HHHhhhHHHHHHHHHHHHHHH
Confidence 445566666666666655543
No 169
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=41.06 E-value=17 Score=44.75 Aligned_cols=24 Identities=46% Similarity=0.509 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005614 628 KLRIEREELERRHREEKARLQAEA 651 (688)
Q Consensus 628 ~~~~e~~~~~~~~~~~~~~~~~~~ 651 (688)
|-|.|.-|.-||+.|-++|-+.|+
T Consensus 582 kKRee~~ek~RReaEq~~reerER 605 (982)
T PF03154_consen 582 KKREERVEKARREAEQRAREERER 605 (982)
T ss_pred hhhHHHHHHHHhhhhccchhhhhh
Confidence 444444444444444444444443
No 170
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=40.99 E-value=1.4e+02 Score=34.13 Aligned_cols=11 Identities=27% Similarity=0.495 Sum_probs=5.0
Q ss_pred HHHHHHHHHhh
Q 005614 364 KRILSTELEAL 374 (688)
Q Consensus 364 K~~L~~~I~~L 374 (688)
..+|...|..|
T Consensus 61 ~~kL~~~lk~~ 71 (420)
T COG4942 61 RAKLEKQLKSL 71 (420)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 171
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=40.78 E-value=2.4e+02 Score=29.53 Aligned_cols=15 Identities=20% Similarity=0.191 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 005614 671 RKRELEREAARQALQ 685 (688)
Q Consensus 671 ~~~e~~r~~~r~~lq 685 (688)
..-|.|++.+...|+
T Consensus 108 ~~ie~E~~~a~~~l~ 122 (246)
T TIGR03321 108 EALRREQAALSDELR 122 (246)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555554443
No 172
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=40.06 E-value=2.6e+02 Score=28.37 Aligned_cols=6 Identities=33% Similarity=0.551 Sum_probs=2.1
Q ss_pred HHHHHH
Q 005614 641 REEKAR 646 (688)
Q Consensus 641 ~~~~~~ 646 (688)
++++.+
T Consensus 32 ~~eAe~ 37 (198)
T PRK01558 32 KEEAEE 37 (198)
T ss_pred HHHHHH
Confidence 333333
No 173
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=40.05 E-value=2.2e+02 Score=28.52 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 005614 668 EAKRKRELEREAARQALQMV 687 (688)
Q Consensus 668 ~~~~~~e~~r~~~r~~lq~m 687 (688)
+++.+-+.+|+.+...|+.+
T Consensus 131 ea~~~I~~~k~~a~~~l~~~ 150 (181)
T PRK13454 131 ESEKRIAEIRAGALESVEEV 150 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777654
No 174
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=40.01 E-value=1.5e+02 Score=32.93 Aligned_cols=47 Identities=34% Similarity=0.321 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005614 633 REELERRHREEKARLQAEAKAAEEARRKAEAEAAAEAKRKRELEREAARQ 682 (688)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~r~~~r~ 682 (688)
.|++-++.+||++++|++..+.....+..++| -..--||+-..-|++
T Consensus 132 LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeee---sq~LnrELaE~layq 178 (401)
T PF06785_consen 132 LEGLIRHLREENQCLQLQLDALQQECGEKEEE---SQTLNRELAEALAYQ 178 (401)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHH---HHHHHHHHHHHHHHH
Confidence 67799999999999999999888666554422 233344544444444
No 175
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=39.69 E-value=3.1e+02 Score=27.06 Aligned_cols=17 Identities=35% Similarity=0.358 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005614 669 AKRKRELEREAARQALQ 685 (688)
Q Consensus 669 ~~~~~e~~r~~~r~~lq 685 (688)
++..-+.|++.++..|+
T Consensus 117 a~~~ie~e~~~a~~el~ 133 (173)
T PRK13460 117 AVKEIELAKGKALSQLQ 133 (173)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33445555666665554
No 176
>PRK11546 zraP zinc resistance protein; Provisional
Probab=39.66 E-value=2.9e+02 Score=27.04 Aligned_cols=62 Identities=16% Similarity=0.193 Sum_probs=47.0
Q ss_pred CCCCCCCCCCCCChhHHHHHHhhhhhhhhhHHHHHHH---------HhhhcCCCChHHHHHHHHHHHHHHH
Q 005614 580 HEGESAPSERQVSPDKLYRAALLRNRFADTILKAREK---------ALEKGEKRDPEKLRIEREELERRHR 641 (688)
Q Consensus 580 ~~~~~~~~~~~~sp~k~~raa~l~~rfadti~ka~~k---------~l~~g~k~dp~~~~~e~~~~~~~~~ 641 (688)
..|+....-.+|+||+.--.=-|...|.+....-|++ +|....+-|++|++.-..|+...+.
T Consensus 33 ~~G~~~~~~~~LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~ 103 (143)
T PRK11546 33 GHGMWQQNAAPLTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQ 103 (143)
T ss_pred CCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 3455555678999999888878899999988887754 3457889999988887666666554
No 177
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=39.05 E-value=2.2e+02 Score=32.05 Aligned_cols=46 Identities=30% Similarity=0.426 Sum_probs=34.7
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005614 618 LEKGEKRDPEKLRIEREELERRHREEKARLQAEAKAAEEARRKAEA 663 (688)
Q Consensus 618 l~~g~k~dp~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 663 (688)
|-.+=..|-+++-+|-.+|+|...+-...++|-..|.|.+.+.|++
T Consensus 286 lar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqa 331 (442)
T PF06637_consen 286 LARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQA 331 (442)
T ss_pred HHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444456778999999999998888888888877777766665554
No 178
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=38.96 E-value=2.9e+02 Score=34.69 Aligned_cols=13 Identities=23% Similarity=0.332 Sum_probs=8.2
Q ss_pred hcCC-CChHHHHHH
Q 005614 620 KGEK-RDPEKLRIE 632 (688)
Q Consensus 620 ~g~k-~dp~~~~~e 632 (688)
.+++ .+++.+.++
T Consensus 798 ~~d~r~~~~~~~~~ 811 (1018)
T KOG2002|consen 798 NGDKRISKTVIAQE 811 (1018)
T ss_pred cCCCCCCHHHHHHH
Confidence 4566 667766665
No 179
>PF10252 PP28: Casein kinase substrate phosphoprotein PP28; InterPro: IPR019380 This domain is a region of 70 residues conserved in proteins from plants to humans and contains a serine/arginine rich motif. In rats the full protein is a casein kinase substrate, and this region contains phosphorylation sites for both cAMP-dependent protein kinase and casein kinase II [].
Probab=38.91 E-value=1.3e+02 Score=26.74 Aligned_cols=33 Identities=42% Similarity=0.625 Sum_probs=20.6
Q ss_pred ChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 005614 625 DPEKLRIEREELERRHREEK-ARLQAEAKAAEEA 657 (688)
Q Consensus 625 dp~~~~~e~~~~~~~~~~~~-~~~~~~~~~a~~~ 657 (688)
.|+==++|+|++|+.+..+. -++.++.+..|+.
T Consensus 22 ~~~lSRRERE~iekq~A~erY~klh~~GKT~eak 55 (82)
T PF10252_consen 22 PPELSRREREEIEKQRARERYMKLHAEGKTDEAK 55 (82)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 35555788888888765554 3456666655543
No 180
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=38.57 E-value=2.3e+02 Score=29.10 Aligned_cols=18 Identities=17% Similarity=0.119 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005614 668 EAKRKRELEREAARQALQ 685 (688)
Q Consensus 668 ~~~~~~e~~r~~~r~~lq 685 (688)
+++.+-+.+|+.|+..|.
T Consensus 153 ~Ae~~I~~ek~~A~~el~ 170 (204)
T PRK09174 153 EAEARIAAIKAKAMADVG 170 (204)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555566666665554
No 181
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=37.45 E-value=2.8e+02 Score=26.91 Aligned_cols=17 Identities=18% Similarity=0.155 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005614 668 EAKRKRELEREAARQAL 684 (688)
Q Consensus 668 ~~~~~~e~~r~~~r~~l 684 (688)
+++.+.++..+.|+..+
T Consensus 111 ~A~~ea~~~~~~a~~~i 127 (156)
T CHL00118 111 QAQKYIDSLLNEATKQL 127 (156)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 182
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=37.36 E-value=77 Score=36.58 Aligned_cols=8 Identities=38% Similarity=1.140 Sum_probs=3.8
Q ss_pred HHHHHHHh
Q 005614 380 ESIIDFLK 387 (688)
Q Consensus 380 ~~Iv~IIk 387 (688)
+.|+++|.
T Consensus 208 e~v~~~l~ 215 (460)
T KOG1363|consen 208 EAVVDYLR 215 (460)
T ss_pred HHHHHHHh
Confidence 34455554
No 183
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=37.12 E-value=61 Score=38.98 Aligned_cols=20 Identities=35% Similarity=0.410 Sum_probs=12.2
Q ss_pred CCChHHHHHHHHHHHHHHHH
Q 005614 623 KRDPEKLRIEREELERRHRE 642 (688)
Q Consensus 623 k~dp~~~~~e~~~~~~~~~~ 642 (688)
..||+-|++|+|+.+..+++
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~ 566 (651)
T PTZ00399 547 LDDKEELQREKEEKEALKEQ 566 (651)
T ss_pred ECCHHHHHHHHHHHHHHHHH
Confidence 45777777777755444433
No 184
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=36.80 E-value=28 Score=38.08 Aligned_cols=7 Identities=29% Similarity=0.382 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 005614 298 YFEVRWK 304 (688)
Q Consensus 298 ~Fe~~~k 304 (688)
+|.+-|.
T Consensus 163 ~F~dDlF 169 (407)
T KOG2130|consen 163 YFRDDLF 169 (407)
T ss_pred hhhHHHH
Confidence 3444333
No 185
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=36.50 E-value=3.8e+02 Score=25.92 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005614 669 AKRKRELEREAARQALQ 685 (688)
Q Consensus 669 ~~~~~e~~r~~~r~~lq 685 (688)
++..-+.|++.|+..|+
T Consensus 106 a~~~i~~e~~~a~~~l~ 122 (159)
T PRK13461 106 AKLEAQREKEKAEYEIK 122 (159)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444555555555554
No 186
>PF09831 DUF2058: Uncharacterized protein conserved in bacteria (DUF2058); InterPro: IPR018636 This family, found in various prokaryotic proteins, has no known function.
Probab=35.89 E-value=1.8e+02 Score=29.41 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 005614 666 AAEAKRKRELEREAARQALQMV 687 (688)
Q Consensus 666 ~~~~~~~~e~~r~~~r~~lq~m 687 (688)
++-+.++.+.++++...+|.+|
T Consensus 59 ~Ln~qr~~~~~~K~~~AqikQl 80 (177)
T PF09831_consen 59 ELNRQRQAEAERKEIQAQIKQL 80 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566677777777777665
No 187
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=35.75 E-value=2.9e+02 Score=27.19 Aligned_cols=12 Identities=33% Similarity=0.504 Sum_probs=6.7
Q ss_pred hhHHHHHHHHhh
Q 005614 608 DTILKAREKALE 619 (688)
Q Consensus 608 dti~ka~~k~l~ 619 (688)
-.++..|++...
T Consensus 45 ~~~l~~R~~~I~ 56 (174)
T PRK07352 45 GKILEERREAIL 56 (174)
T ss_pred HHHHHHHHHHHH
Confidence 445566666553
No 188
>PF03879 Cgr1: Cgr1 family; InterPro: IPR005579 Cgr1 is involved in nucleolar integrity and is required for processing pre-rRNA for the 60S ribosome subunit. In Saccharomyces cerevisiae, this protein is conserved and contributes to compartmentalisation of nucleolar constituents []. Cgr1 is a small hydrophilic protein and members of this family are coiled-coil proteins []. Its primary role appears to be in ribosome biogenesis [, ]. Expression of CGR1 is also associated with a cessation of yeast cell growth, which is a prerequisite for germination in this organism [].
Probab=35.62 E-value=3.7e+02 Score=25.10 Aligned_cols=15 Identities=33% Similarity=0.496 Sum_probs=8.5
Q ss_pred hhhhhhHHHHHHHHh
Q 005614 604 NRFADTILKAREKAL 618 (688)
Q Consensus 604 ~rfadti~ka~~k~l 618 (688)
-|-++-.+|++++.|
T Consensus 39 ~R~~~~~~K~~ekEl 53 (108)
T PF03879_consen 39 KRLELKAIKEKEKEL 53 (108)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555566666655
No 189
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=35.16 E-value=1e+02 Score=36.15 Aligned_cols=27 Identities=11% Similarity=0.215 Sum_probs=13.0
Q ss_pred CcEEEEccCCCHHHHHHHHHHHHHHHH
Q 005614 397 DELEIDIDALSDDTLFALRKLLDDYLL 423 (688)
Q Consensus 397 dEIEIDId~L~~~TL~eL~~~V~~~l~ 423 (688)
+.=|+++|++..=+-..=..|+..|-.
T Consensus 36 e~eefn~dd~n~wm~ldd~nflntwtk 62 (782)
T PF07218_consen 36 EAEEFNVDDINSWMKLDDANFLNTWTK 62 (782)
T ss_pred cccccCcccchhcccccHHHHHHHHhh
Confidence 334566666554333333445555533
No 190
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=35.03 E-value=1.2e+02 Score=32.59 Aligned_cols=9 Identities=11% Similarity=0.139 Sum_probs=5.0
Q ss_pred CCCCChhHH
Q 005614 588 ERQVSPDKL 596 (688)
Q Consensus 588 ~~~~sp~k~ 596 (688)
-+.|++++.
T Consensus 81 ik~ls~eE~ 89 (290)
T KOG2689|consen 81 IKLLSEEEK 89 (290)
T ss_pred ccccChHHH
Confidence 345676653
No 191
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=34.93 E-value=4.6e+02 Score=25.91 Aligned_cols=18 Identities=17% Similarity=0.217 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005614 668 EAKRKRELEREAARQALQ 685 (688)
Q Consensus 668 ~~~~~~e~~r~~~r~~lq 685 (688)
+++..-+.|++.|+..|+
T Consensus 118 ~A~~~I~~ek~~a~~~l~ 135 (173)
T PRK13453 118 TAQSEINSQKERAIADIN 135 (173)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555666666666664
No 192
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=34.28 E-value=4e+02 Score=25.01 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 005614 668 EAKRKRELEREAARQALQM 686 (688)
Q Consensus 668 ~~~~~~e~~r~~~r~~lq~ 686 (688)
+++..-+.|++.++..|+.
T Consensus 105 ~a~~~i~~e~~~a~~~l~~ 123 (140)
T PRK07353 105 KARREIEQQKQAALAQLEQ 123 (140)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666553
No 193
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=34.17 E-value=3.8e+02 Score=28.05 Aligned_cols=9 Identities=44% Similarity=0.696 Sum_probs=4.0
Q ss_pred HHHHHHHHh
Q 005614 610 ILKAREKAL 618 (688)
Q Consensus 610 i~ka~~k~l 618 (688)
++..|++..
T Consensus 33 ~l~~R~~~I 41 (246)
T TIGR03321 33 AMDAREKKI 41 (246)
T ss_pred HHHHHHHHH
Confidence 344454444
No 194
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=33.93 E-value=3.1e+02 Score=27.30 Aligned_cols=19 Identities=21% Similarity=0.137 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 005614 668 EAKRKRELEREAARQALQM 686 (688)
Q Consensus 668 ~~~~~~e~~r~~~r~~lq~ 686 (688)
+++.+-+.|++.|...|+.
T Consensus 127 ~A~~~I~~ek~~a~~~l~~ 145 (184)
T PRK13455 127 AAEDQIASAEAAAVKAVRD 145 (184)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666543
No 195
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=33.58 E-value=3.3e+02 Score=26.80 Aligned_cols=9 Identities=22% Similarity=0.401 Sum_probs=4.1
Q ss_pred HHHHHHHHh
Q 005614 610 ILKAREKAL 618 (688)
Q Consensus 610 i~ka~~k~l 618 (688)
++..|++..
T Consensus 44 ~l~~R~~~I 52 (173)
T PRK13460 44 ALDERASGV 52 (173)
T ss_pred HHHHHHHHH
Confidence 344455444
No 196
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=33.24 E-value=5.1e+02 Score=25.90 Aligned_cols=12 Identities=17% Similarity=0.446 Sum_probs=6.4
Q ss_pred hhHHHHHHHHhh
Q 005614 608 DTILKAREKALE 619 (688)
Q Consensus 608 dti~ka~~k~l~ 619 (688)
-.|+..|.+...
T Consensus 57 ~~~l~~R~~~I~ 68 (181)
T PRK13454 57 GAVLAERQGTIT 68 (181)
T ss_pred HHHHHHHHHHHH
Confidence 345556665553
No 197
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=32.85 E-value=5e+02 Score=26.63 Aligned_cols=12 Identities=17% Similarity=0.429 Sum_probs=6.2
Q ss_pred hhHHHHHHHHhh
Q 005614 608 DTILKAREKALE 619 (688)
Q Consensus 608 dti~ka~~k~l~ 619 (688)
-.||..|+..+.
T Consensus 79 ~~vLe~R~~~I~ 90 (204)
T PRK09174 79 GGIIETRRDRIA 90 (204)
T ss_pred HHHHHHHHHHHH
Confidence 445556655443
No 198
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=32.20 E-value=4.8e+02 Score=25.33 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005614 669 AKRKRELEREAARQALQ 685 (688)
Q Consensus 669 ~~~~~e~~r~~~r~~lq 685 (688)
++.+-+.|++.+...|+
T Consensus 109 a~~~I~~ek~~a~~~L~ 125 (164)
T PRK14473 109 ARAQAEQERQRMLSELK 125 (164)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444445555555443
No 199
>PF10872 DUF2740: Protein of unknown function (DUF2740); InterPro: IPR022626 This entry is represented by Bacteriophage P22, Orf48. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins with unknown function has a highly conserved sequence. They are found in Enterobacteria and Enterobacteria phages.
Probab=31.85 E-value=45 Score=25.66 Aligned_cols=15 Identities=33% Similarity=0.868 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHH
Q 005614 112 KLKTDLEQVRVLQKK 126 (688)
Q Consensus 112 Rl~~eLeqvR~l~kk 126 (688)
|++.|||.|...+++
T Consensus 30 rfraelekvkl~~k~ 44 (48)
T PF10872_consen 30 RFRAELEKVKLMQKR 44 (48)
T ss_pred hHHHHHHHHHHHHHh
Confidence 899999999998886
No 200
>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein. DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.
Probab=31.68 E-value=1.9e+02 Score=28.30 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005614 633 REELERRHREEKARLQAEAKAAE 655 (688)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~a~ 655 (688)
+.+++++.++-++++....+.|+
T Consensus 8 ~~~~~~~r~~~~~~~~~~r~eA~ 30 (151)
T PF11875_consen 8 KREIEEQREKNKEEIAEKRAEAE 30 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444333444433333333
No 201
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=30.77 E-value=4e+02 Score=26.10 Aligned_cols=12 Identities=17% Similarity=0.185 Sum_probs=6.5
Q ss_pred hhHHHHHHHHhh
Q 005614 608 DTILKAREKALE 619 (688)
Q Consensus 608 dti~ka~~k~l~ 619 (688)
--++..|.+...
T Consensus 36 ~~~le~R~~~I~ 47 (167)
T PRK14475 36 AGALDAYAAKIQ 47 (167)
T ss_pred HHHHHHHHHHHH
Confidence 445566665553
No 202
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=30.59 E-value=5e+02 Score=25.05 Aligned_cols=15 Identities=20% Similarity=0.160 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 005614 671 RKRELEREAARQALQ 685 (688)
Q Consensus 671 ~~~e~~r~~~r~~lq 685 (688)
..-+.||+.|...|+
T Consensus 105 ~~I~~ek~~a~~el~ 119 (159)
T PRK09173 105 QKIAQAETDAINAVR 119 (159)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555555554
No 203
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=30.42 E-value=4.4e+02 Score=26.24 Aligned_cols=7 Identities=43% Similarity=0.520 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 005614 678 EAARQAL 684 (688)
Q Consensus 678 ~~~r~~l 684 (688)
|+.+.|.
T Consensus 74 eaR~dav 80 (175)
T COG4741 74 EAREDAV 80 (175)
T ss_pred HHHHHHH
Confidence 3333333
No 204
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=30.37 E-value=5.9e+02 Score=26.89 Aligned_cols=9 Identities=22% Similarity=0.696 Sum_probs=4.4
Q ss_pred HHHHHHHHh
Q 005614 610 ILKAREKAL 618 (688)
Q Consensus 610 i~ka~~k~l 618 (688)
+++.|++..
T Consensus 33 ~l~eR~~~I 41 (250)
T PRK14474 33 VMKKRQQRI 41 (250)
T ss_pred HHHHHHHHH
Confidence 345555544
No 205
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=30.37 E-value=4.1e+02 Score=26.27 Aligned_cols=8 Identities=25% Similarity=0.684 Sum_probs=3.4
Q ss_pred HHHHHHHh
Q 005614 611 LKAREKAL 618 (688)
Q Consensus 611 ~ka~~k~l 618 (688)
+..|++..
T Consensus 47 l~~R~~~I 54 (173)
T PRK13453 47 MDKRERDI 54 (173)
T ss_pred HHHHHHHH
Confidence 34454443
No 206
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=30.29 E-value=4.1e+02 Score=25.80 Aligned_cols=18 Identities=33% Similarity=0.377 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005614 668 EAKRKRELEREAARQALQ 685 (688)
Q Consensus 668 ~~~~~~e~~r~~~r~~lq 685 (688)
+++..-+.|++.|+..|+
T Consensus 108 ~a~~~i~~ek~~a~~~l~ 125 (164)
T PRK14471 108 QAKASIESEKNAAMAEIK 125 (164)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455566666666554
No 207
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=29.94 E-value=4.2e+02 Score=26.14 Aligned_cols=9 Identities=44% Similarity=0.711 Sum_probs=4.1
Q ss_pred HHHHHHHHh
Q 005614 610 ILKAREKAL 618 (688)
Q Consensus 610 i~ka~~k~l 618 (688)
++..|++..
T Consensus 46 ~l~~R~~~I 54 (175)
T PRK14472 46 ALEEREKGI 54 (175)
T ss_pred HHHHHHHHH
Confidence 344554444
No 208
>PF15402 Spc7_N: N-terminus of kinetochore NMS complex subunit Spc7
Probab=29.11 E-value=57 Score=40.56 Aligned_cols=16 Identities=38% Similarity=0.586 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 005614 637 ERRHREEKARLQAEAK 652 (688)
Q Consensus 637 ~~~~~~~~~~~~~~~~ 652 (688)
..|+|||+.|.+.|.+
T Consensus 146 AarEREe~er~e~ek~ 161 (927)
T PF15402_consen 146 AAREREERERAEREKE 161 (927)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 209
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=29.08 E-value=1.8e+02 Score=31.41 Aligned_cols=41 Identities=46% Similarity=0.478 Sum_probs=18.4
Q ss_pred HHHHHhhh-cCCCChH-HHH--HHHHHHHHH--HHHHHHHHHHHHHH
Q 005614 613 AREKALEK-GEKRDPE-KLR--IEREELERR--HREEKARLQAEAKA 653 (688)
Q Consensus 613 a~~k~l~~-g~k~dp~-~~~--~e~~~~~~~--~~~~~~~~~~~~~~ 653 (688)
||-+-|-+ --+.||- |+- +|++..++| ++|+-||+.|++++
T Consensus 216 aRl~~LV~~A~~~DPRIK~fkEqeK~~k~~rkWereagar~~a~aa~ 262 (379)
T COG5269 216 ARLKRLVQIAKKRDPRIKSFKEQEKEMKKIRKWEREAGARLKALAAL 262 (379)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHHHHHHhccchhhhhhHHHHHHH
Confidence 44444433 2345542 443 334444444 35555666555443
No 210
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.96 E-value=3.2e+02 Score=28.10 Aligned_cols=6 Identities=33% Similarity=0.711 Sum_probs=2.6
Q ss_pred HHHHHh
Q 005614 596 LYRAAL 601 (688)
Q Consensus 596 ~~raa~ 601 (688)
.||-++
T Consensus 70 ~Y~~~v 75 (227)
T KOG4691|consen 70 HYRQTV 75 (227)
T ss_pred HHHHHH
Confidence 344443
No 211
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=28.85 E-value=4.4e+02 Score=26.26 Aligned_cols=17 Identities=12% Similarity=0.216 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005614 669 AKRKRELEREAARQALQ 685 (688)
Q Consensus 669 ~~~~~e~~r~~~r~~lq 685 (688)
++..-+.|++.|+.+|+
T Consensus 125 a~~~ie~Ek~~a~~~l~ 141 (184)
T CHL00019 125 KNETIRFEQQRAINQVR 141 (184)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444455555555554
No 212
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=28.43 E-value=3.3e+02 Score=29.47 Aligned_cols=72 Identities=26% Similarity=0.281 Sum_probs=34.0
Q ss_pred HHHHHHHHhhhcCCCChHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005614 610 ILKAREKALEKGEKRDPEKLRIEREELERRHR---EEKARLQAEAKAAEEARRKAEAEAAAEAKRKRELEREAARQAL 684 (688)
Q Consensus 610 i~ka~~k~l~~g~k~dp~~~~~e~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~r~~~r~~l 684 (688)
.+|-|+|.+..--|+.|+-=-+++.++....+ +.++.++|++.|-..|-++. |.+-++...+.+.++-|-++
T Consensus 234 ~fkEqeK~~k~~rkWereagar~~a~aa~k~kae~k~kae~ea~a~asa~a~kkk---aKE~~kka~k~~Kk~ikna~ 308 (379)
T COG5269 234 SFKEQEKEMKKIRKWEREAGARLKALAALKGKAEAKNKAEIEAEALASATAVKKK---AKEVMKKALKMEKKAIKNAA 308 (379)
T ss_pred hHHHHHHHHHHHhccchhhhhhHHHHHHHhhhhHHHhHHHHHHHHhhhhHHHHHh---HHHHHHHHHHHHHHHHHhhh
Confidence 45777887766666666544443333332222 22333333333333333322 23444555555556655554
No 213
>PF09802 Sec66: Preprotein translocase subunit Sec66; InterPro: IPR018624 Members of this family of proteins are a component of the heterotetrameric Sec62/63 complex composed of SEC62, SEC63, SEC66 and SEC72. The Sec62/63 complex associates with the Sec61 complex to form the Sec complex. Sec 66 is involved in SRP-independent post-translational translocation across the endoplasmic reticulum and functions together with the Sec61 complex and KAR2 in a channel-forming translocon complex. Furthermore, Sec66 is also required for growth at elevated temperatures [, , , ].
Probab=28.31 E-value=6.6e+02 Score=25.74 Aligned_cols=38 Identities=39% Similarity=0.636 Sum_probs=28.3
Q ss_pred CCCCChhHHHHHHhhhhhhhhh--HHHHHHH-----Hh-hhcCCCC
Q 005614 588 ERQVSPDKLYRAALLRNRFADT--ILKAREK-----AL-EKGEKRD 625 (688)
Q Consensus 588 ~~~~sp~k~~raa~l~~rfadt--i~ka~~k-----~l-~~g~k~d 625 (688)
..+-.|++.|+|||||+--+|. |+|-|+. .| .+|--||
T Consensus 65 k~~k~~e~VLKAALLrRavedIrR~~klre~k~~l~~L~q~GsIGD 110 (190)
T PF09802_consen 65 KKPKVPEKVLKAALLRRAVEDIRRIIKLREDKPALNKLYQNGSIGD 110 (190)
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHCCCccH
Confidence 4477899999999999988885 5666642 23 3687777
No 214
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=27.75 E-value=4.5e+02 Score=26.95 Aligned_cols=9 Identities=44% Similarity=0.601 Sum_probs=5.0
Q ss_pred HHHHHHHhh
Q 005614 611 LKAREKALE 619 (688)
Q Consensus 611 ~ka~~k~l~ 619 (688)
|.|++|.|.
T Consensus 43 L~~~Q~~L~ 51 (228)
T PRK06800 43 LLAQQKSLH 51 (228)
T ss_pred HHHHHHHHH
Confidence 345666664
No 215
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=26.76 E-value=2.7e+02 Score=31.90 Aligned_cols=27 Identities=11% Similarity=0.202 Sum_probs=15.3
Q ss_pred ccccCcccccccCCCchhhhccCC-CCH
Q 005614 223 WVFNTPVDVMKLNIPDYFTVIKHP-MDL 249 (688)
Q Consensus 223 ~~F~~PVdp~~~~~PDYy~iIk~P-MDL 249 (688)
..|..+.......+|+.|..|+.| |+.
T Consensus 66 sd~es~~glg~nsfp~~yse~r~~nm~g 93 (502)
T KOG0982|consen 66 SDFESQMGLGLNSFPKRYSELRERNMSG 93 (502)
T ss_pred cccccccCcccccchHHHHHHhcCCCCC
Confidence 345554443344677777777666 554
No 216
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=26.53 E-value=2.7 Score=35.85 Aligned_cols=55 Identities=13% Similarity=0.137 Sum_probs=43.0
Q ss_pred CCCCCchhHhhhcccccCCCCCcccccCccccccccCccccccccccCCCccccCCccce
Q 005614 36 SGFVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQV 95 (688)
Q Consensus 36 ~~~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~~~~~~rk~i~~n~~~~~~f~v~~~~ 95 (688)
...+|+|+..|..|++.. ++..|+.+..|.+.++-..+-+.|--| +..||-+...
T Consensus 23 ~~~~p~y~~~i~~P~dL~--~I~~kl~~~~Y~s~~~f~~Dv~~i~~N---a~~yn~~~s~ 77 (84)
T PF00439_consen 23 PKEYPDYYEIIKNPMDLS--TIRKKLENGKYKSIEEFEADVRLIFQN---ARRYNPPDSP 77 (84)
T ss_dssp TTTSTTHHHHSSSS--HH--HHHHHHHTTSSSSHHHHHHHHHHHHHH---HHHHSCTTSH
T ss_pred hhhCCCHHHHHhhccchh--hhhHHhhccchhhHHHHHHHHHHHHHH---HHHHCCCcCH
Confidence 356899999999999887 899999999999988888887777766 5667755443
No 217
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=26.51 E-value=3.7e+02 Score=30.82 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005614 668 EAKRKRELEREAARQALQ 685 (688)
Q Consensus 668 ~~~~~~e~~r~~~r~~lq 685 (688)
.++.+-|.||+.+...|+
T Consensus 101 ~a~~~Ie~ek~~a~~elr 118 (445)
T PRK13428 101 QGARQVQLLRAQLTRQLR 118 (445)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334455566666655554
No 218
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=26.13 E-value=5.5e+02 Score=24.05 Aligned_cols=7 Identities=29% Similarity=0.506 Sum_probs=2.8
Q ss_pred HHHHHHh
Q 005614 612 KAREKAL 618 (688)
Q Consensus 612 ka~~k~l 618 (688)
..|+...
T Consensus 35 ~~R~~~I 41 (140)
T PRK07353 35 EEREDYI 41 (140)
T ss_pred HHHHHHH
Confidence 3444333
No 219
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=26.03 E-value=85 Score=26.64 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=23.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhhh
Q 005614 250 GTIKCKITSGQYSDPLAFAADVRLTFS 276 (688)
Q Consensus 250 ~TIkkKL~~~~Y~s~~eF~~DvrLIf~ 276 (688)
..|+..+..|.|.|..+++.|.-.+|.
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le 38 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLE 38 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 368999999999999999999877763
No 220
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=24.97 E-value=6.9e+02 Score=24.80 Aligned_cols=11 Identities=18% Similarity=0.459 Sum_probs=6.6
Q ss_pred hHHHHHHHHhh
Q 005614 609 TILKAREKALE 619 (688)
Q Consensus 609 ti~ka~~k~l~ 619 (688)
.++..|++...
T Consensus 54 ~~L~~R~~~I~ 64 (184)
T PRK13455 54 GMLDKRAEGIR 64 (184)
T ss_pred HHHHHHHHHHH
Confidence 45666766554
No 221
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=24.86 E-value=6.4e+02 Score=24.43 Aligned_cols=7 Identities=43% Similarity=0.757 Sum_probs=2.8
Q ss_pred HHHHHHh
Q 005614 612 KAREKAL 618 (688)
Q Consensus 612 ka~~k~l 618 (688)
..|+...
T Consensus 38 ~~R~~~I 44 (164)
T PRK14471 38 KEREDSI 44 (164)
T ss_pred HHHHHHH
Confidence 3444333
No 222
>PTZ00436 60S ribosomal protein L19-like protein; Provisional
Probab=24.26 E-value=4.8e+02 Score=28.69 Aligned_cols=24 Identities=21% Similarity=0.229 Sum_probs=13.8
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHh
Q 005614 595 KLYRAALLRNRFADTILKAREKAL 618 (688)
Q Consensus 595 k~~raa~l~~rfadti~ka~~k~l 618 (688)
..||--|-+=|=.+.|-+-.=..|
T Consensus 100 RaLRRlLKklRd~gKIDkh~YR~L 123 (357)
T PTZ00436 100 RILRRLLRKYREEKKIDRHIYREL 123 (357)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHH
Confidence 456666666666666655554444
No 223
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=24.09 E-value=3.5e+02 Score=31.47 Aligned_cols=66 Identities=26% Similarity=0.368 Sum_probs=42.3
Q ss_pred CCChhHHHHHHhhhhhhhhhH--HHHHHHHhh---hcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005614 590 QVSPDKLYRAALLRNRFADTI--LKAREKALE---KGEKRDPEKLRIEREELERRHREEKARLQAEAKAAE 655 (688)
Q Consensus 590 ~~sp~k~~raa~l~~rfadti--~ka~~k~l~---~g~k~dp~~~~~e~~~~~~~~~~~~~~~~~~~~~a~ 655 (688)
+++|+-+==.-+-=+.|+||| |=|+-|.+. +.-..|=++|+.|-++|.+|+..-..|++....++.
T Consensus 41 ~ltpee~kalGiegDTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~ 111 (472)
T TIGR03752 41 ELSPEELKALGIEGDTPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSET 111 (472)
T ss_pred cCCcchhHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 677766433345567788888 456666664 222344567888888887777777777776665533
No 224
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=23.70 E-value=2.2e+02 Score=33.30 Aligned_cols=7 Identities=29% Similarity=0.306 Sum_probs=2.8
Q ss_pred HHHhhhh
Q 005614 598 RAALLRN 604 (688)
Q Consensus 598 raa~l~~ 604 (688)
||+..|.
T Consensus 214 ~aq~~K~ 220 (489)
T PF05262_consen 214 RAQEAKK 220 (489)
T ss_pred HHHHHHH
Confidence 3443433
No 225
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=22.87 E-value=3.6e+02 Score=28.95 Aligned_cols=30 Identities=30% Similarity=0.519 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005614 627 EKLRIEREELERRHREEKARLQAEAKAAEE 656 (688)
Q Consensus 627 ~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~ 656 (688)
+.++.+.+.++..+++..+.++.+.+.-++
T Consensus 214 e~~e~e~~~l~e~~~~~~~~le~~~~~~ee 243 (297)
T PF02841_consen 214 EAAEKEKEKLEEKQKEQEQMLEQQERSYEE 243 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555554443
No 226
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=22.82 E-value=6.9e+02 Score=24.61 Aligned_cols=60 Identities=13% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005614 627 EKLRIEREELERRHREEKARLQAEAKAAEEARRKAEAEAAAEAKRKRELEREAARQALQM 686 (688)
Q Consensus 627 ~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~r~~~r~~lq~ 686 (688)
++|..-+.+....-.+.++..+.+.....+..+...++-.++++..-+.|++.+...|.+
T Consensus 81 ~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ie~Ek~~a~~elk~ 140 (167)
T PRK08475 81 KKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSFEELMEFEVRKMEREVVE 140 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 227
>PTZ00491 major vault protein; Provisional
Probab=22.28 E-value=3.4e+02 Score=33.71 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=13.0
Q ss_pred hHHHHHHhhhhhh--hhhHHHHHHHHhhh
Q 005614 594 DKLYRAALLRNRF--ADTILKAREKALEK 620 (688)
Q Consensus 594 ~k~~raa~l~~rf--adti~ka~~k~l~~ 620 (688)
|...|.||=|+== -..++|+||-+..|
T Consensus 642 D~~tr~~LqkSVqlAiEItt~sqEa~A~h 670 (850)
T PTZ00491 642 DERTRDSLQKSVQLAIEITTKSQEAAARH 670 (850)
T ss_pred CHHHHHHHHHHHHHhhhhhchhHHHHHHH
Confidence 3445555554411 13455666655543
No 228
>PF01237 Oxysterol_BP: Oxysterol-binding protein ; InterPro: IPR000648 A number of eukaryotic proteins that seem to be involved with sterol synthesis and/or its regulation have been found [] to be evolutionary related. These include mammalian oxysterol-binding protein (OSBP), a protein of about 800 amino-acid residues that binds a variety of oxysterols (oxygenated derivatives of cholesterol); yeast OSH1, a protein of 859 residues that also plays a role in ergosterol synthesis; yeast proteins HES1 and KES1, highly related proteins of 434 residues that seem to play a role in ergosterol synthesis; and yeast hypothetical proteins YHR001w, YHR073w and YKR003w.; PDB: 3SPW_A 1ZI7_C 1ZHW_A 1ZHX_A 1ZHY_A 1ZHZ_A 1ZHT_A.
Probab=22.25 E-value=1.5e+02 Score=32.74 Aligned_cols=29 Identities=34% Similarity=0.614 Sum_probs=19.8
Q ss_pred HHhhhcCCCChHHHHHHHHHHHHHHHHHHHHH
Q 005614 616 KALEKGEKRDPEKLRIEREELERRHREEKARL 647 (688)
Q Consensus 616 k~l~~g~k~dp~~~~~e~~~~~~~~~~~~~~~ 647 (688)
.+|++| |-++-+.||.+||.+||++++.+
T Consensus 292 ~al~~g---d~~~A~~eK~~lEe~QR~~rk~R 320 (354)
T PF01237_consen 292 RALENG---DIDKAQEEKKRLEEKQRADRKER 320 (354)
T ss_dssp HHHHHT----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcC---CHHHHHHHHHHHHHHHHHHHHHH
Confidence 366665 66777788888888887765544
No 229
>PHA03309 transcriptional regulator ICP4; Provisional
Probab=22.15 E-value=80 Score=38.73 Aligned_cols=16 Identities=31% Similarity=0.665 Sum_probs=7.8
Q ss_pred ccccccccCc-----cccccc
Q 005614 64 EMTASEDSCA-----PKRKCI 79 (688)
Q Consensus 64 ~~~~s~~~~~-----~~rk~i 79 (688)
.|..|.|.-. |.|-||
T Consensus 1302 ~~spsadaqsplrsrpsrdc~ 1322 (2033)
T PHA03309 1302 HPSPSADAQSPLRSRPSRDCF 1322 (2033)
T ss_pred CCCcccccccccccCcccccC
Confidence 3444555443 455565
No 230
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=21.90 E-value=6.1e+02 Score=28.08 Aligned_cols=22 Identities=23% Similarity=0.152 Sum_probs=13.6
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHhhh
Q 005614 596 LYRAALLRNRFADTILKAREKALEK 620 (688)
Q Consensus 596 ~~raa~l~~rfadti~ka~~k~l~~ 620 (688)
.|+++.++. -+++-+++|.|.+
T Consensus 7 ~~q~a~~~l---k~~~~~~qk~l~~ 28 (332)
T TIGR01541 7 TQQIADRKL---KKLNTADEKSLQS 28 (332)
T ss_pred HHHHHHHHH---hhhhHHHHHHHHH
Confidence 356666664 5666677776653
No 231
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=21.34 E-value=5.5e+02 Score=30.15 Aligned_cols=72 Identities=24% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
Q 005614 611 LKAREKALEKGEKRDPEKLRIEREELERRHREEKARLQAEAKAAEEARRKAEAEAAAEAKRKRELER------EAARQAL 684 (688)
Q Consensus 611 ~ka~~k~l~~g~k~dp~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~r------~~~r~~l 684 (688)
++.|+..|.+-+. .|.+..+.|++++++=..+.+.-.+..++..++.+...+...++..++|+ ++||..|
T Consensus 78 L~qrE~rL~qRee----~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~eak~~l 153 (514)
T TIGR03319 78 LQRLERRLLQREE----TLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEIL 153 (514)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Q ss_pred Hh
Q 005614 685 QM 686 (688)
Q Consensus 685 q~ 686 (688)
.+
T Consensus 154 ~~ 155 (514)
T TIGR03319 154 LE 155 (514)
T ss_pred HH
No 232
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=21.08 E-value=2.8e+02 Score=32.24 Aligned_cols=52 Identities=27% Similarity=0.259 Sum_probs=29.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005614 624 RDPEKLRIEREELERRHREEKARLQAEAKAAEEARRKAEAEAAAEAKRKRELER 677 (688)
Q Consensus 624 ~dp~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~r 677 (688)
.+|-.+.+++-+.+++.+.-+....|....|+.|.+. -.+-+++++++|.++
T Consensus 396 ~rP~~~~~k~~~~~~~~ek~~~~~~~Kk~eA~~av~L--Mq~t~~Ri~~~E~~k 447 (546)
T KOG0718|consen 396 LRPYLLKRKKRERLLRREKLKDSVEAKKVEAERAVKL--MQETAERIKKLEEEK 447 (546)
T ss_pred ecHHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhc
Confidence 5666666665555555444445555555555555544 334566666666654
No 233
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=21.07 E-value=6.3e+02 Score=25.80 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005614 633 REELERRHREEKARLQAEAKA 653 (688)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~ 653 (688)
.+++....+++..++.+++++
T Consensus 19 ak~I~~eA~~eae~i~~ea~~ 39 (194)
T COG1390 19 AEEILEEAREEAEKIKEEAKR 39 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 234
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=20.56 E-value=2.8e+02 Score=26.73 Aligned_cols=63 Identities=32% Similarity=0.343 Sum_probs=34.6
Q ss_pred hhhHHHHHHHH-h-h--hcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005614 607 ADTILKAREKA-L-E--KGEKRDPEKLRIEREELERRHREEKARLQAEAKAAEEARRKAEAEAAAEAKRKRELEREAA 680 (688)
Q Consensus 607 adti~ka~~k~-l-~--~g~k~dp~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~r~~~ 680 (688)
.|.|+|||+-- | + =|....+ ..|.+.=+++++|-+.+++.++.+-.|+++..++-+++-+..|
T Consensus 76 ~dIi~kakqIe~LIdsLPg~~~se-----------e~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i~~ia 142 (144)
T PF11221_consen 76 TDIIRKAKQIEYLIDSLPGIEVSE-----------EEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQELIREIA 142 (144)
T ss_dssp HHHHHHHHHHHHHHHHSTTSSS-H-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 48889999752 2 2 2433332 2333444566666666666666555555555555555555444
No 235
>PF14738 PaaSYMP: Solute carrier (proton/amino acid symporter), TRAMD3 or PAT1
Probab=20.41 E-value=8.4e+02 Score=24.10 Aligned_cols=51 Identities=31% Similarity=0.313 Sum_probs=34.9
Q ss_pred hhHHHHHHH-Hhhh--cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005614 608 DTILKAREK-ALEK--GEKRDPEKLRIEREELERRHREEKARLQAEAKAAEEAR 658 (688)
Q Consensus 608 dti~ka~~k-~l~~--g~k~dp~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~~ 658 (688)
..|-.||.| +++. ..--|+..+..-+.-++..+.+|=+-.+.+++..++.|
T Consensus 50 e~IeRaR~KRawEa~Lpp~~d~~~~~kRr~mme~~E~~EW~~RE~eI~~lQe~R 103 (154)
T PF14738_consen 50 EMIERAREKRAWEAALPPLDDEASLEKRRKMMEEMEWKEWAFREEEIQELQERR 103 (154)
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888877 3331 22367777777677777777788787788877766544
No 236
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=20.41 E-value=1.8e+02 Score=32.86 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005614 408 DDTLFALRKLLDDYLLE 424 (688)
Q Consensus 408 ~~TL~eL~~~V~~~l~e 424 (688)
..|--.|.++|..-|..
T Consensus 143 ekTk~aleKiVn~klA~ 159 (506)
T KOG2441|consen 143 EKTKSALEKIVNAKLAA 159 (506)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34444455554444433
No 237
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=20.24 E-value=1.3e+02 Score=35.57 Aligned_cols=71 Identities=25% Similarity=0.376 Sum_probs=35.3
Q ss_pred CCCCCCCCCCCCChhHHHHH-HhhhhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005614 580 HEGESAPSERQVSPDKLYRA-ALLRNRFADTILKAREKALEKGEKRDPEKLRIEREELERRHREEKARLQAEAKAAEEAR 658 (688)
Q Consensus 580 ~~~~~~~~~~~~sp~k~~ra-a~l~~rfadti~ka~~k~l~~g~k~dp~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~~ 658 (688)
.||+-+ +...+-|+-..+. +.=-.+-++.+.||+. .|..+|+.|-+..+..+. +..+.+++.++++||+|.
T Consensus 608 dEGe~~-~~~~~~~e~~~~~~~~d~~~~g~~l~k~~a-~l~~~D~~DK~~~kek~~------ek~r~k~~k~rr~aeea~ 679 (758)
T KOG0343|consen 608 DEGELA-PEYEQMPETITSKAGDDDDTGGINLEKAKA-ELKEEDKEDKKRFKEKRK------EKRREKLEKERRRAEEAN 679 (758)
T ss_pred Cccccc-hhhhhchhhhhhhccCchhhccchHHHHHH-HHhhhhhhhHHHHHHHHH------HHHHHHHHHHHHHHHhcc
Confidence 355533 2444444433333 2222334567778877 777888888554443222 222333444455555543
No 238
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=20.18 E-value=8.6e+02 Score=25.81 Aligned_cols=42 Identities=26% Similarity=0.319 Sum_probs=22.3
Q ss_pred hhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 005614 603 RNRFADTILKAREKALEKGEKRDPEKLRIEREELERRHREEKARLQA 649 (688)
Q Consensus 603 ~~rfadti~ka~~k~l~~g~k~dp~~~~~e~~~~~~~~~~~~~~~~~ 649 (688)
...|.+.+.+|++++-.. -++++.+.+.+....+++++++.+
T Consensus 76 ~~~a~~~l~~~~~ea~~~-----l~~a~~q~e~~~~ea~~e~e~~~~ 117 (281)
T PRK06669 76 EEEAKEELLKKTDEASSI-----IEKLQMQIEREQEEWEEELERLIE 117 (281)
T ss_pred hHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777788888765422 234555555444444444444333
No 239
>PF11516 DUF3220: Protein of unknown function (DUF3120); InterPro: IPR021597 This family of proteins with unknown function appears to be restricted to Bordetella. ; PDB: 2JPF_A.
Probab=20.13 E-value=48 Score=29.13 Aligned_cols=11 Identities=55% Similarity=0.842 Sum_probs=7.1
Q ss_pred HHHhhhhhhhh
Q 005614 598 RAALLRNRFAD 608 (688)
Q Consensus 598 raa~l~~rfad 608 (688)
-.||||.|||+
T Consensus 92 ytamlrerfag 102 (106)
T PF11516_consen 92 YTAMLRERFAG 102 (106)
T ss_dssp HHHHHTTGGGG
T ss_pred HHHHHHHHhcc
Confidence 35677777763
Done!