Query 005614
Match_columns 688
No_of_seqs 362 out of 1508
Neff 5.7
Searched_HMMs 29240
Date Tue Mar 26 18:52:25 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005614.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2116-2120//hhsearch_pdb/005614hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3uv5_A Transcription initiatio 1.0 1 1 221.3 7.6 200 36-310 41-241 (265)
2 3aad_A Transcription initiatio 1.0 1 1 214.5 6.0 101 203-305 46-146 (292)
3 2r10_A Chromatin structure-rem 1.0 1 1 214.4 10.5 85 219-305 228-312 (361)
4 2r0y_A Chromatin structure-rem 1.0 1 1 210.3 7.9 189 36-306 57-263 (311)
5 3fkm_X Signaling protein; brom 1.0 1 1 208.6 12.1 109 199-307 16-124 (166)
6 4alg_A Bromodomain-containing 1.0 1 1 207.2 11.7 108 200-307 28-135 (154)
7 2ouo_A HUNK1 protein, bromodom 1.0 1 1 204.8 10.4 106 201-306 19-127 (130)
8 2oss_A HUNK1 protein, bromodom 1.0 1 1 201.3 12.8 105 202-306 19-123 (127)
9 3mb3_A PH-interacting protein; 1.0 1 1 199.0 11.5 108 201-310 18-126 (135)
10 3jvl_A Bromodomain-containing 1.0 1 1 198.5 8.7 107 201-307 6-115 (120)
No 1
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=1.00 E-value=1 Score=221.26 Aligned_cols=200 Identities=22% Similarity=0.329 Sum_probs=150.9
Q ss_pred CCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHH
Q ss_conf 89887315765202235788776665576555645676444421036788655687541020576899999999999987
Q 005614 36 SGFVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELKLKT 115 (688)
Q Consensus 36 ~~~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~~~~~~rk~i~~n~~~~~~f~v~~~~~~~s~~s~~e~~~L~~Rl~~ 115 (688)
...+|||+..|..||+.. ++-.++.++.|.+.+.-..+.+.|--| |.+||-+.-.+. .-.+.|...+..
T Consensus 41 ~~~~pdY~~iI~~PmdL~--tI~~kl~~~~Y~~~~~f~~D~~li~~N---a~~yN~~~s~i~------~~A~~l~~~~~~ 109 (265)
T 3uv5_A 41 AKVVKDYYKIITRPMDLQ--TLRENVRKRLYPSREEFREHLELIVKN---SATYNGPKHSLT------QISQSMLDLCDE 109 (265)
T ss_dssp TTTSTTHHHHCSSCCCHH--HHHHHHHTTCCSSHHHHHHHHHHHHHH---HHHHHCTTCHHH------HHHHHHHHHHHH
T ss_pred HHHCCCHHHHHCCCCCHH--HHHHHHHCCCCCCHHHHHHHHHHHHHH---HHHCCCCCCHHH------HHHHHHHHHHHH
T ss_conf 343677899817888699--999999769999999999999997764---642489987488------999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89999999977631036765699866666688998887667899964458899877999999998767999999999989
Q 005614 116 DLEQVRVLQKKVASLSSNVVLSPSSDIRSCNDGQKRPLLESVGGPSVVLAPKGKKRAPNGRNGPQTKKGNSGRLEPKKPA 195 (688)
Q Consensus 116 eLeqvR~l~kki~~~~~~~~~sp~~~~~s~~~~~~~~~~~~~~~~s~s~s~~~kkr~~~~~~~~~~kr~~~~r~~~~k~~ 195 (688)
.+.+...-..+++... .|. ..
T Consensus 110 ~~~~~~~~~~~~ek~i-----~p~----------------------------------~d-------------------- 130 (265)
T 3uv5_A 110 KLKEKEDKLARLEKAI-----NPL----------------------------------LD-------------------- 130 (265)
T ss_dssp HHHHTHHHHHHHHHHH-----STT----------------------------------TT--------------------
T ss_pred HHHHHHHHHHHHHHHH-----HHC----------------------------------CC--------------------
T ss_conf 9988864100244433-----210----------------------------------12--------------------
Q ss_pred CCCCCCHHHHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 99998619999999999999-99099886666766623448896010126999979999997179999999899999886
Q 005614 196 GAASSSNAMLMKQCENLLTR-LMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLT 274 (688)
Q Consensus 196 ~~~~~~~~~~~k~c~~IL~~-L~~~k~s~~F~~PVdp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLi 274 (688)
......+...|..++.. |++|+.+|+|..||++. .+||||.+|++||||+||++||.++.|.++.+|..||+||
T Consensus 131 ---d~~~~~~~~il~~i~~~~l~~~~~~~~F~~pv~~~--~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li 205 (265)
T 3uv5_A 131 ---DDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKK--FVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLI 205 (265)
T ss_dssp ---CHHHHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH--HHCCHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf ---10225889999999999998633007886899856--7474999818943699999998448999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 652201199999899999999999999999999638
Q 005614 275 FSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKKL 310 (688)
Q Consensus 275 f~NA~~YN~~~s~V~~~A~~L~~~Fe~~~k~i~~kl 310 (688)
|.||++||+++|.||.+|..|+..|+..|+.+...+
T Consensus 206 f~Na~~yN~~~s~~~~~A~~l~~~~~~~~~~~~~~~ 241 (265)
T 3uv5_A 206 LANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHL 241 (265)
T ss_dssp HHHHHHHTCTTCHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999889999999999999999999999989999
No 2
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=214.48 Aligned_cols=101 Identities=23% Similarity=0.456 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999909988666676662344889601012699997999999717999999989999988665220119
Q 005614 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (688)
Q Consensus 203 ~~~~k~c~~IL~~L~~~k~s~~F~~PVdp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLif~NA~~YN 282 (688)
..+...|..||..|++++.+|+|..||++. .+||||+||++||||+||++||.++.|.++.+|..||+|||+||++||
T Consensus 46 ~~l~~~~~~il~~l~~~~~a~~F~~pV~~~--~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN 123 (292)
T 3aad_A 46 VTLSSILESIINDMRDLPNTYPFHTPVNAK--VVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYN 123 (292)
T ss_dssp HHHHHHHHHHHHHHSSSTTCGGGSSSCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHCCCCCCH--HCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 899999999999998098555436889901--055689880786787899988627985999999999878888899975
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998999999999999999999
Q 005614 283 PPQNDVHIMADTLRKYFEVRWKA 305 (688)
Q Consensus 283 ~~~s~V~~~A~~L~~~Fe~~~k~ 305 (688)
++++++|.+|..|...|+..|+.
T Consensus 124 ~~~s~i~~~A~~L~~~~~~~~~~ 146 (292)
T 3aad_A 124 GPKHSLTQISQSMLDLCDEKLKE 146 (292)
T ss_dssp CSSSHHHHHHTHHHHTTTTTGGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 87308999999888888865110
No 3
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=1.00 E-value=1 Score=214.35 Aligned_cols=85 Identities=31% Similarity=0.497 Sum_probs=55.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 99886666766623448896010126999979999997179999999899999886652201199999899999999999
Q 005614 219 HQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKY 298 (688)
Q Consensus 219 ~k~s~~F~~PVdp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLif~NA~~YN~~~s~V~~~A~~L~~~ 298 (688)
|+.+|+|+.||++. .+||||+||++||||+||++||.++.|.++.+|..||+|||+||++||+++|.||.+|..|+.+
T Consensus 228 ~~~s~~F~~pvd~~--~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~ 305 (361)
T 2r10_A 228 VKLSEPFMELVDKD--ELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNY 305 (361)
T ss_dssp SCTTGGGSSCCCTT--TCTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHH
T ss_pred CCCHHCCCCCCCHH--HCCCHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 75110105899913--3545898856865699999998569998999999999999999998779999999999999999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q 005614 299 FEVRWKA 305 (688)
Q Consensus 299 Fe~~~k~ 305 (688)
|+..|+.
T Consensus 306 f~~~~~~ 312 (361)
T 2r10_A 306 FNYLIQK 312 (361)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999988
No 4
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=1.00 E-value=1 Score=210.26 Aligned_cols=189 Identities=19% Similarity=0.308 Sum_probs=135.3
Q ss_pred CCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHH
Q ss_conf 89887315765202235788776665576555645676444421036788655687541020576899999999999987
Q 005614 36 SGFVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELKLKT 115 (688)
Q Consensus 36 ~~~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~~~~~~~rk~i~~n~~~~~~f~v~~~~~~~s~~s~~e~~~L~~Rl~~ 115 (688)
...+|||+.+|..||+.. ++-.|+ .+|+.+......+.+.|--| |.+||.++-.++ ...+.|..-+..
T Consensus 57 ~~~~PdY~~iIk~PmDL~--tI~~kl-~~y~~s~~~f~~D~~li~~N---a~~yN~~~s~i~------~~A~~l~~~~~~ 124 (311)
T 2r0y_A 57 RKFHPQYYYKIQQPMSIN--EIKSRD-YEYEDGPSNFLLDVELLTKN---CQAYNEYDSLIV------KNSMQVVMLIEF 124 (311)
T ss_dssp TTTCHHHHHHCSSCCCHH--HHHHSC-CCSTTHHHHHHHHHHHHHHH---HHHHSCTTSHHH------HHHHHHHHHHHH
T ss_pred CCCCCCHHHHCCCCCCHH--HHHHHH-HCCCCCHHHHHHHHHHHHHH---HHHCCCCCCHHH------HHHHHHHHHHHH
T ss_conf 665988677758988899--999987-63369999999999999998---987068999999------999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89999999977631036765699866666688998887667899964458899877999999998767999999999989
Q 005614 116 DLEQVRVLQKKVASLSSNVVLSPSSDIRSCNDGQKRPLLESVGGPSVVLAPKGKKRAPNGRNGPQTKKGNSGRLEPKKPA 195 (688)
Q Consensus 116 eLeqvR~l~kki~~~~~~~~~sp~~~~~s~~~~~~~~~~~~~~~~s~s~s~~~kkr~~~~~~~~~~kr~~~~r~~~~k~~ 195 (688)
++.+.+ .+ . .+. ...
T Consensus 125 ~~~k~k----~~---~-----~~~-----------------------~i~------------------------------ 139 (311)
T 2r0y_A 125 EVLKAK----NL---K-----RNY-----------------------LIN------------------------------ 139 (311)
T ss_dssp HHHHHH----TG---G-----GCC-----------------------BCC------------------------------
T ss_pred HHHHCC----CC---C-----CCC-----------------------CCC------------------------------
T ss_conf 986401----68---8-----877-----------------------777------------------------------
Q ss_pred CCCCCCHHHHHHHHHHHHH-------HHH-----------CCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHH
Q ss_conf 9999861999999999999-------999-----------0998866667666234488960101269999799999971
Q 005614 196 GAASSSNAMLMKQCENLLT-------RLM-----------SHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKIT 257 (688)
Q Consensus 196 ~~~~~~~~~~~k~c~~IL~-------~L~-----------~~k~s~~F~~PVdp~~~~~PdYy~iIk~PMDL~tIkkKL~ 257 (688)
......+.+.|..++. .++ .|+.+|+|+.||++. .+||||+||++||||+||++||.
T Consensus 140 ---~~~k~~l~~~~~~l~~~~~~~i~~~l~~~r~~k~~~~~~~~s~~F~~pvd~~--~~PdY~~iIk~PMDL~tI~~kl~ 214 (311)
T 2r0y_A 140 ---SEVKAKLLHYLNKLVDATEKKINQALLGASSPKNLDDKVKLSEPFMELVDKD--ELPEYYEIVHSPMALSIVKQNLE 214 (311)
T ss_dssp ---HHHHHHHHHHHHHHHHCCHHHHHHHHHGGGSCSSCCCSSCTTGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCHH--HCCCHHHHHCCCCCHHHHHHHHH
T ss_conf ---4777788999999876668889999850455522235774178884799913--25468988478568999999997
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7999999989999988665220119999989999999999999999999
Q 005614 258 SGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKAI 306 (688)
Q Consensus 258 ~~~Y~S~~eF~~DvrLif~NA~~YN~~~s~V~~~A~~L~~~Fe~~~k~i 306 (688)
++.|.++.+|..||+|||+||++||+++|.||.+|..|+++|+..|+..
T Consensus 215 ~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 263 (311)
T 2r0y_A 215 IGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQKE 263 (311)
T ss_dssp HTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 6999799999999999999999867999999999999999999999986
No 5
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=1.00 E-value=1 Score=208.61 Aligned_cols=109 Identities=33% Similarity=0.536 Sum_probs=104.7
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 98619999999999999990998866667666234488960101269999799999971799999998999998866522
Q 005614 199 SSSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNA 278 (688)
Q Consensus 199 ~~~~~~~~k~c~~IL~~L~~~k~s~~F~~PVdp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLif~NA 278 (688)
.+....|.+.|..||..|++++.+|+|..||++.++++||||.||++||||+||++||.++.|.++.+|..||+|||.||
T Consensus 16 ~p~~~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na 95 (166)
T 3fkm_X 16 FQGNKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNC 95 (166)
T ss_dssp -CTTHHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHCCCCCHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 96419999999999999985889712148898232449978876689999999999972799979999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01199999899999999999999999999
Q 005614 279 MTYNPPQNDVHIMADTLRKYFEVRWKAIE 307 (688)
Q Consensus 279 ~~YN~~~s~V~~~A~~L~~~Fe~~~k~i~ 307 (688)
++||++++.||.+|..|+++|+..|..+.
T Consensus 96 ~~yN~~~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 96 SLYNTSNSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp HHSSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99879999999999999999999999866
No 6
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=1.00 E-value=1 Score=207.24 Aligned_cols=108 Identities=35% Similarity=0.629 Sum_probs=102.6
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 86199999999999999909988666676662344889601012699997999999717999999989999988665220
Q 005614 200 SSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAM 279 (688)
Q Consensus 200 ~~~~~~~k~c~~IL~~L~~~k~s~~F~~PVdp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLif~NA~ 279 (688)
....++...|..||+.|++++.+|+|..||++.++++||||+||++||||+||++||.++.|.++.+|..||+|||.||+
T Consensus 28 r~t~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~ 107 (154)
T 4alg_A 28 RVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCY 107 (154)
T ss_dssp CCBHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 65099999999999999858685320578991322498789883899889999999854899999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1199999899999999999999999999
Q 005614 280 TYNPPQNDVHIMADTLRKYFEVRWKAIE 307 (688)
Q Consensus 280 ~YN~~~s~V~~~A~~L~~~Fe~~~k~i~ 307 (688)
+||++++.||.+|..|+++|+..|+.+.
T Consensus 108 ~YN~~~s~i~~~A~~L~~~f~~~~~~l~ 135 (154)
T 4alg_A 108 IYNKPTDDIVLMAQTLEKIFLQKVASMP 135 (154)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9879999999999999999999999787
No 7
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=1.00 E-value=1 Score=204.79 Aligned_cols=106 Identities=42% Similarity=0.783 Sum_probs=100.3
Q ss_pred CHHHHHHHHHHHHHHHHCCCC---CCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 619999999999999990998---86666766623448896010126999979999997179999999899999886652
Q 005614 201 SNAMLMKQCENLLTRLMSHQF---GWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSN 277 (688)
Q Consensus 201 ~~~~~~k~c~~IL~~L~~~k~---s~~F~~PVdp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLif~N 277 (688)
.....++.|..||..|+.++. +|+|..|||+..+++||||+||++||||+||++||.++.|.++.+|.+||+|||.|
T Consensus 19 ~~~~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~N 98 (130)
T 2ouo_A 19 KVSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSN 98 (130)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 56999999999999999677635578753789903236985898818988899999999868999899999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 20119999989999999999999999999
Q 005614 278 AMTYNPPQNDVHIMADTLRKYFEVRWKAI 306 (688)
Q Consensus 278 A~~YN~~~s~V~~~A~~L~~~Fe~~~k~i 306 (688)
|++||+++|.||.+|..|++.|+..|+.+
T Consensus 99 a~~yN~~~s~i~~~A~~L~~~f~~~~~~l 127 (130)
T 2ouo_A 99 CYKYNPPDHEVVAMARKLQDVFEMRFAKM 127 (130)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 99986999999999999999999999877
No 8
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=1.00 E-value=1 Score=201.26 Aligned_cols=105 Identities=37% Similarity=0.688 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 19999999999999990998866667666234488960101269999799999971799999998999998866522011
Q 005614 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (688)
Q Consensus 202 ~~~~~k~c~~IL~~L~~~k~s~~F~~PVdp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLif~NA~~Y 281 (688)
..++...|..||..|++|+.+|+|..||++.++++||||+||++||||+||++||.++.|.++.+|.+||+|||+||++|
T Consensus 19 ~~~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 98 (127)
T 2oss_A 19 TNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIY 98 (127)
T ss_dssp CHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999994955464448998232358648988279999999999998699999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999989999999999999999999
Q 005614 282 NPPQNDVHIMADTLRKYFEVRWKAI 306 (688)
Q Consensus 282 N~~~s~V~~~A~~L~~~Fe~~~k~i 306 (688)
|+++|.||.+|..|++.|++.|+.+
T Consensus 99 N~~~s~i~~~A~~L~~~f~~~~~~l 123 (127)
T 2oss_A 99 NKPGDDIVLMAEALEKLFLQKINEL 123 (127)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 7999999999999999999999977
No 9
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=1.00 E-value=1 Score=198.95 Aligned_cols=108 Identities=31% Similarity=0.595 Sum_probs=102.0
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 61999999999999999099886666766623448896010126999979999997179999999899999886652201
Q 005614 201 SNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (688)
Q Consensus 201 ~~~~~~k~c~~IL~~L~~~k~s~~F~~PVdp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLif~NA~~ 280 (688)
....|.+.|..||..|++++.+|+|..||++. .+||||++|++||||+||++||.++.|.++.+|..||+|||.||++
T Consensus 18 ~~~~l~~~~~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~ 95 (135)
T 3mb3_A 18 DIQAWKKQCEELLNLIFQCEDSEPFRQPVDLL--EYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKA 95 (135)
T ss_dssp CSSTHHHHHHHHHHHHHHSGGGGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHH--HCCCHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 79999999999999998298876656899923--2798899937985899999998179999999999999999999999
Q ss_pred CCCC-CCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 1999-99899999999999999999999638
Q 005614 281 YNPP-QNDVHIMADTLRKYFEVRWKAIEKKL 310 (688)
Q Consensus 281 YN~~-~s~V~~~A~~L~~~Fe~~~k~i~~kl 310 (688)
||++ +++||.+|..|+++|+..|..+...+
T Consensus 96 yN~~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 126 (135)
T 3mb3_A 96 YTPSKRSRIYSMSLRLSAFFEEHISSVLSDY 126 (135)
T ss_dssp HSCCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7889898999999999999999999999989
No 10
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=1.00 E-value=1 Score=198.46 Aligned_cols=107 Identities=42% Similarity=0.775 Sum_probs=101.3
Q ss_pred CHHHHHHHHHHHHHHHHCCCC---CCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 619999999999999990998---86666766623448896010126999979999997179999999899999886652
Q 005614 201 SNAMLMKQCENLLTRLMSHQF---GWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSN 277 (688)
Q Consensus 201 ~~~~~~k~c~~IL~~L~~~k~---s~~F~~PVdp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLif~N 277 (688)
...++++.|..||..|++++. +|+|..||++..+++||||.+|++||||+||++||.++.|.++.+|..||+|||.|
T Consensus 6 ~~~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~N 85 (120)
T 3jvl_A 6 KISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSN 85 (120)
T ss_dssp SSCHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCHHCCCCCHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 12999999999999998676765253631899903148998899858999999999998269998999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 201199999899999999999999999999
Q 005614 278 AMTYNPPQNDVHIMADTLRKYFEVRWKAIE 307 (688)
Q Consensus 278 A~~YN~~~s~V~~~A~~L~~~Fe~~~k~i~ 307 (688)
|++||+++|.||.+|..|+..|+..|..+.
T Consensus 86 a~~yN~~~s~~~~~A~~L~~~f~~~~~~~p 115 (120)
T 3jvl_A 86 CYKYNPPDHEVVAMARKLQDVFEMRFAKMP 115 (120)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999879999999999999999999998775
Done!