Query 005616
Match_columns 688
No_of_seqs 457 out of 2984
Neff 7.3
Searched_HMMs 29240
Date Tue Mar 26 18:23:08 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005616.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2121-2125//hhsearch_pdb/005616hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoj_A High affinity nerve gro 1.0 1 1 407.4 21.5 255 342-612 41-319 (329)
2 4asz_A BDNF/NT-3 growth factor 1.0 1 1 406.0 17.9 255 342-612 13-289 (299)
3 3omv_A RAF proto-oncogene seri 1.0 1 1 405.3 21.7 256 342-612 36-300 (307)
4 4gt4_A Tyrosine-protein kinase 1.0 1 1 403.2 20.5 252 343-610 27-304 (308)
5 4b9d_A Serine/threonine-protei 1.0 1 1 395.5 15.8 247 342-606 24-278 (350)
6 4fie_A Serine/threonine-protei 1.0 1 1 394.8 22.0 242 342-602 151-398 (423)
7 4fih_A Serine/threonine-protei 1.0 1 1 393.7 20.5 242 342-602 74-321 (346)
8 4ase_A Vascular endothelial gr 1.0 1 1 391.7 17.0 261 335-611 57-346 (353)
9 4g3f_A NF-kappa-beta-inducing 1.0 1 1 386.7 20.0 251 341-610 57-314 (336)
10 3hmm_A TGF-beta receptor type- 1.0 1 1 385.3 18.7 260 342-613 3-298 (303)
No 1
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=407.43 Aligned_cols=255 Identities=26% Similarity=0.432 Sum_probs=214.0
Q ss_pred CCCCCCEEEECCCCEEEEEEEEC-------CEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCC--CCEE
Q ss_conf 69543403401386589999998-------90999999713893346999999999970799951257053378--7435
Q 005616 342 CNFSESFKVGQGGFGCVYKGEML-------GRTVAIKMLYSHNMQGQLEFQQEVRVLSKLQHPHLVTLLGACPE--AWSL 412 (688)
Q Consensus 342 ~~f~~~~~LG~G~fG~Vykg~~~-------g~~VAIK~l~~~~~~~~~~f~~E~~iL~~l~HpnIV~l~g~~~~--~~~L 412 (688)
.+|....+||+|+||.||+|++. +..||||+++.........|.+|+.++++++|||||+++|+|.+ ..+|
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 99288779714778489989987866577896999999775797999999999999985899899969899998998999
Q ss_pred EEEECCCCCHHHHHCCCCC------------CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCE
Q ss_conf 8861789968888612499------------9989999999999999999999850699816728999996220799966
Q 005616 413 VYEYLPNGSLQDRLFRKSN------------VSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSS 480 (688)
Q Consensus 413 V~E~~~~gsL~~~L~~~~~------------~~~l~~~~~~~ia~qia~aL~yLH~~~~~~IiHrDIKp~NILLd~~~~~ 480 (688)
|||||++|+|.+++..... ..+++|..++.|+.|||.||.|||+.+ ||||||||+||||+.++.+
T Consensus 121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLKp~NILl~~~~~~ 197 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH---FVHRDLATRNCLVGQGLVV 197 (329)
T ss_dssp EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTTEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC---EECCCCCHHHEEECCCCCE
T ss_conf 9982799939999986075410012211245788999999999999999999984088---4226666764898899968
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCHHH--HHHHH
Q ss_conf 99105731001578876777655689988988888010104999982027679999999980-9999998257--89885
Q 005616 481 KICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLT-GRLPVGLAGE--VRRAV 557 (688)
Q Consensus 481 KL~DFGla~~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~s~ksDVwSlGviL~ELlt-G~~P~~~~~~--i~~~i 557 (688)
||+|||+|+........ .......||+.|||||++.+..|+.++|||||||+||||+| |+.||..... +...+
T Consensus 198 Ki~DFGla~~~~~~~~~----~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i 273 (329)
T 4aoj_A 198 KIGDFGMSRDIYSTDYY----RVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCI 273 (329)
T ss_dssp EECCCC--------------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHHHHHHH
T ss_pred EECCCCCCEECCCCCCC----EECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 97666033365678753----00476455656658265447999966300105789999982899999998999999999
Q ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 2196322357878999979999999999872227999999992789999998430
Q 005616 558 SCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHV 612 (688)
Q Consensus 558 ~~~~l~~~ld~~~~~~~~~~~~~l~~Li~~Cl~~dP~~RPs~~~~i~~~Le~l~~ 612 (688)
..+.. ...|..++..+.+|+.+||+.||.+|||+. +++..|+.+..
T Consensus 274 ~~g~~--------~~~p~~~~~~~~~li~~cl~~dP~~RPs~~-ei~~~L~~l~~ 319 (329)
T 4aoj_A 274 TQGRE--------LERPRACPPEVYAIMRGCWQREPQQRHSIK-DVHARLQALAQ 319 (329)
T ss_dssp HHTCC--------CCCCTTCCHHHHHHHHHHCCSSTTTSCCHH-HHHHHHHHHHH
T ss_pred HCCCC--------CCCCCCCCHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHHHH
T ss_conf 80898--------998644639999999997475965792999-99999998745
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=406.02 Aligned_cols=255 Identities=28% Similarity=0.449 Sum_probs=214.1
Q ss_pred CCCCCCEEEECCCCEEEEEEEEC-------CEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCC--CCEE
Q ss_conf 69543403401386589999998-------90999999713893346999999999970799951257053378--7435
Q 005616 342 CNFSESFKVGQGGFGCVYKGEML-------GRTVAIKMLYSHNMQGQLEFQQEVRVLSKLQHPHLVTLLGACPE--AWSL 412 (688)
Q Consensus 342 ~~f~~~~~LG~G~fG~Vykg~~~-------g~~VAIK~l~~~~~~~~~~f~~E~~iL~~l~HpnIV~l~g~~~~--~~~L 412 (688)
++|...+.||+|+||.||+|++. +..||||+++.........|.+|+.++++++|||||+++|+|.+ ..+|
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 89298249820788299999987766677887999999677785899999999999985899888628799956998999
Q ss_pred EEEECCCCCHHHHHCCCC----------CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEE
Q ss_conf 886178996888861249----------9998999999999999999999985069981672899999622079996699
Q 005616 413 VYEYLPNGSLQDRLFRKS----------NVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKI 482 (688)
Q Consensus 413 V~E~~~~gsL~~~L~~~~----------~~~~l~~~~~~~ia~qia~aL~yLH~~~~~~IiHrDIKp~NILLd~~~~~KL 482 (688)
|||||++|+|.++|.... ....++|..++.|+.|+|.||.|||+.+ |+||||||+||||+.++.+||
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDlKp~NILl~~~~~~Ki 169 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQH---FVHRDLATRNCLVGENLLVKI 169 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEE
T ss_conf 99858999689999860864211123577788999999999999999999997599---046765776389879986898
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCHH--HHHHHHHC
Q ss_conf 105731001578876777655689988988888010104999982027679999999980-999999825--78988521
Q 005616 483 CDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLT-GRLPVGLAG--EVRRAVSC 559 (688)
Q Consensus 483 ~DFGla~~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~s~ksDVwSlGviL~ELlt-G~~P~~~~~--~i~~~i~~ 559 (688)
+|||+|+........ .......||+.|||||++.+..|+.++|||||||+||||+| |+.||.... .+...+..
T Consensus 170 ~DFGla~~~~~~~~~----~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~ 245 (299)
T 4asz_A 170 GDFGMSRDVYSTDYY----RVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQ 245 (299)
T ss_dssp CCCSCHHHHTGGGCE----EETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHH
T ss_pred CCCCCCEECCCCCCE----EECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHC
T ss_conf 873001006788741----6647513470103889870799970366778899999998089999999899999999980
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 96322357878999979999999999872227999999992789999998430
Q 005616 560 GKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHV 612 (688)
Q Consensus 560 ~~l~~~ld~~~~~~~~~~~~~l~~Li~~Cl~~dP~~RPs~~~~i~~~Le~l~~ 612 (688)
+... ..|..++..+.+|+.+||+.||.+|||+. ++...|+.+..
T Consensus 246 ~~~~--------~~p~~~~~~~~~li~~cl~~dP~~RPs~~-~i~~~L~~~~~ 289 (299)
T 4asz_A 246 GRVL--------QRPRTCPQEVYELMLGCWQREPHMRKNIK-GIHTLLQNLAK 289 (299)
T ss_dssp TCCC--------CCCTTCCHHHHHHHHHHTCSSGGGSCCHH-HHHHHHHHHHH
T ss_pred CCCC--------CCCCCCHHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHHHH
T ss_conf 8988--------99741439999999997687966892999-99999987776
No 3
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=405.26 Aligned_cols=256 Identities=28% Similarity=0.454 Sum_probs=209.0
Q ss_pred CCCCCCEEEECCCCEEEEEEEECCEEEEEEEEECCCC--CCHHHHHHHHHHHHCCCCCCEEEEECCCCC-CCEEEEEECC
Q ss_conf 6954340340138658999999890999999713893--346999999999970799951257053378-7435886178
Q 005616 342 CNFSESFKVGQGGFGCVYKGEMLGRTVAIKMLYSHNM--QGQLEFQQEVRVLSKLQHPHLVTLLGACPE-AWSLVYEYLP 418 (688)
Q Consensus 342 ~~f~~~~~LG~G~fG~Vykg~~~g~~VAIK~l~~~~~--~~~~~f~~E~~iL~~l~HpnIV~l~g~~~~-~~~LV~E~~~ 418 (688)
++|.+..+||+|+||+||+|++.+ .||||+++.... .....|.+|+.++++++|||||+++|+|.+ ..+||||||+
T Consensus 36 ~~l~l~~~iG~G~fG~Vy~~~~~~-~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~iVmEy~~ 114 (307)
T 3omv_A 36 SEVMLSTRIGSGSFGTVYKGKWHG-DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQWCE 114 (307)
T ss_dssp TSCCEEEECCCCSSSEEEEEESSS-EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEECCS
T ss_pred HHEEEEEEEEECCCCEEEEEEECC-CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEEEEEECCC
T ss_conf 994984498208886899999899-6899999726899999999999999998589988746999997895899997489
Q ss_pred CCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 99688886124999989999999999999999999850699816728999996220799966991057310015788767
Q 005616 419 NGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYL 498 (688)
Q Consensus 419 ~gsL~~~L~~~~~~~~l~~~~~~~ia~qia~aL~yLH~~~~~~IiHrDIKp~NILLd~~~~~KL~DFGla~~~~~~~~~~ 498 (688)
+|+|.++|.... ..++|..++.|+.|||.||.|||+.+ ||||||||+||||+.++.+||+|||+|+........
T Consensus 115 gGsL~~~l~~~~--~~l~~~~~~~i~~qia~gL~yLH~~~---IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~- 188 (307)
T 3omv_A 115 GSSLYKHLHVQE--TKFQMFQLIDIARQTAQGMDYLHAKN---IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGS- 188 (307)
T ss_dssp SCBHHHHHHTSC--CCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCCSSSEEEETTEEEEECCCSSCBC--------
T ss_pred CCCHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEEECCCCEECCCCCCC-
T ss_conf 987889875248--99999999999999999999997799---527855789978889990899441575424667764-
Q ss_pred CCCCCCCCCCCCCCCCCHHHHCC---CCCCCCCHHHHHHHHHHHHHHCCCCCCCHHH---HHHHHHCCCCCCCCCCCCCC
Q ss_conf 77655689988988888010104---9999820276799999999809999998257---89885219632235787899
Q 005616 499 PSFHRSTAPKGSFPYADPEYHRT---GVLTPKSDSYSFGLIILQLLTGRLPVGLAGE---VRRAVSCGKLSSILDPLAGD 572 (688)
Q Consensus 499 ~~~~~~~~~~Gt~~Y~APE~l~~---~~~s~ksDVwSlGviL~ELltG~~P~~~~~~---i~~~i~~~~l~~~ld~~~~~ 572 (688)
......+||+.|||||++.+ +.|+.++|||||||+||||+||+.||..... +...+..+.. .|....
T Consensus 189 ---~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~~~~~~----~p~~~~ 261 (307)
T 3omv_A 189 ---QQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYA----SPDLSK 261 (307)
T ss_dssp --------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHTTCC----CCCSTT
T ss_pred ---EEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCC----CCCCCC
T ss_conf ---0315644687724987861468998786877572899999999788998999969999999965888----887200
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9979999999999872227999999992789999998430
Q 005616 573 WPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHV 612 (688)
Q Consensus 573 ~~~~~~~~l~~Li~~Cl~~dP~~RPs~~~~i~~~Le~l~~ 612 (688)
.+..++..+.+|+.+||+.||.+|||+. +++..|+.+.-
T Consensus 262 ~~~~~~~~l~~li~~cl~~dP~~RPs~~-ei~~~Le~l~~ 300 (307)
T 3omv_A 262 LYKNCPKAMKRLVADCVKKVKEERPLFP-QILSSIELLQH 300 (307)
T ss_dssp SCTTSCHHHHHHHHHHTCSSSTTSCCHH-HHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHHHC
T ss_conf 3544569999999997577976890989-99999999745
No 4
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=403.24 Aligned_cols=252 Identities=27% Similarity=0.435 Sum_probs=208.3
Q ss_pred CCCCCEEEECCCCEEEEEEEEC-------CEEEEEEEEECCCC-CCHHHHHHHHHHHHCCCCCCEEEEECCCCC--CCEE
Q ss_conf 9543403401386589999998-------90999999713893-346999999999970799951257053378--7435
Q 005616 343 NFSESFKVGQGGFGCVYKGEML-------GRTVAIKMLYSHNM-QGQLEFQQEVRVLSKLQHPHLVTLLGACPE--AWSL 412 (688)
Q Consensus 343 ~f~~~~~LG~G~fG~Vykg~~~-------g~~VAIK~l~~~~~-~~~~~f~~E~~iL~~l~HpnIV~l~g~~~~--~~~L 412 (688)
++.+..+||+|+||.||+|.+. +..||||+++.... .....|.+|+.++++++|||||+++|+|.+ ..+|
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~l 106 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSM 106 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred HCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEE
T ss_conf 88586691358884899999857765888869999998801496899999999999985899898773649988998899
Q ss_pred EEEECCCCCHHHHHCCCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCC
Q ss_conf 8861789968888612499-------------998999999999999999999985069981672899999622079996
Q 005616 413 VYEYLPNGSLQDRLFRKSN-------------VSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELS 479 (688)
Q Consensus 413 V~E~~~~gsL~~~L~~~~~-------------~~~l~~~~~~~ia~qia~aL~yLH~~~~~~IiHrDIKp~NILLd~~~~ 479 (688)
|||||++|+|.++|..... ...++|..++.|+.|||.||.|||+.+ ||||||||+||||+.++.
T Consensus 107 V~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLK~~NILl~~~~~ 183 (308)
T 4gt4_A 107 IFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHH---VVHKDLATRNVLVYDKLN 183 (308)
T ss_dssp EEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGC
T ss_pred EEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCEEECCCCC
T ss_conf 99818999499999862765433332211112468999999999999999999998689---977873623068879997
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCHH--HHHHH
Q ss_conf 699105731001578876777655689988988888010104999982027679999999980-999999825--78988
Q 005616 480 SKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLT-GRLPVGLAG--EVRRA 556 (688)
Q Consensus 480 ~KL~DFGla~~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~s~ksDVwSlGviL~ELlt-G~~P~~~~~--~i~~~ 556 (688)
+||+|||+|+........ .......||+.|||||++.++.|+.++|||||||+||||+| |..||.... .+...
T Consensus 184 ~Ki~DFGlar~~~~~~~~----~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~~~~~ 259 (308)
T 4gt4_A 184 VKISDLGLFREVYAADYY----KLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEM 259 (308)
T ss_dssp EEECCSCCBCGGGGGGCB----CSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHH
T ss_pred EEECCCCCCEECCCCCCE----EEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 898876020233677740----4734512577656989982799996300015799999999689999999899999999
Q ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 521963223578789999799999999998722279999999927899999984
Q 005616 557 VSCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQL 610 (688)
Q Consensus 557 i~~~~l~~~ld~~~~~~~~~~~~~l~~Li~~Cl~~dP~~RPs~~~~i~~~Le~l 610 (688)
+..+... ..|..++..+.+|+.+||+.||.+||++. +++..|+.+
T Consensus 260 i~~~~~~--------~~p~~~~~~~~~li~~C~~~dP~~RPs~~-ei~~~L~a~ 304 (308)
T 4gt4_A 260 IRNRQVL--------PCPDDCPAWVYALMIECWNEFPSRRPRFK-DIHSRLRAW 304 (308)
T ss_dssp HHTTCCC--------CCCTTCCHHHHHHHHHHTCSSGGGSCCHH-HHHHHHHTS
T ss_pred HHCCCCC--------CCCCCCHHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHC
T ss_conf 9819989--------99620369999999997587965792999-999999853
No 5
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=395.52 Aligned_cols=247 Identities=25% Similarity=0.337 Sum_probs=206.3
Q ss_pred CCCCCCEEEECCCCEEEEEEEEC--CEEEEEEEEECCCCC--CHHHHHHHHHHHHCCCCCCEEEEECCCCC--CCEEEEE
Q ss_conf 69543403401386589999998--909999997138933--46999999999970799951257053378--7435886
Q 005616 342 CNFSESFKVGQGGFGCVYKGEML--GRTVAIKMLYSHNMQ--GQLEFQQEVRVLSKLQHPHLVTLLGACPE--AWSLVYE 415 (688)
Q Consensus 342 ~~f~~~~~LG~G~fG~Vykg~~~--g~~VAIK~l~~~~~~--~~~~f~~E~~iL~~l~HpnIV~l~g~~~~--~~~LV~E 415 (688)
++|.....||+|+||.||+|+.. |..||||++...... ....|.+|+.++++++|||||++++++.+ ..+||||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 25588479702779399999988999899999986587897999999999999987799898919999998999999994
Q ss_pred ECCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCC
Q ss_conf 17899688886124999989999999999999999999850699816728999996220799966991057310015788
Q 005616 416 YLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDT 495 (688)
Q Consensus 416 ~~~~gsL~~~L~~~~~~~~l~~~~~~~ia~qia~aL~yLH~~~~~~IiHrDIKp~NILLd~~~~~KL~DFGla~~~~~~~ 495 (688)
||+||+|.++|..... ..+++..+..|+.||+.||.|||+.+ |+||||||+||||+.++.+||+|||+|+.+....
T Consensus 104 y~~gg~L~~~i~~~~~-~~~~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~ 179 (350)
T 4b9d_A 104 YCEGGDLFKRINAQKG-VLFQEDQILDWFVQICLALKHVHDRK---ILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTV 179 (350)
T ss_dssp CCTTCBHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHHHHHTT---CEETTCCGGGEEECTTCCEEECSTTEESCCCHHH
T ss_pred CCCCCCHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHCC---EEECCCCHHHEEECCCCCEEECCCCCCEEECCCC
T ss_conf 8899839999997389-99978999999999999999999899---1513597899798789998976465214406885
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHH--HHHHHHCCCCCCCCCCCCCCC
Q ss_conf 767776556899889888880101049999820276799999999809999998257--898852196322357878999
Q 005616 496 LYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGE--VRRAVSCGKLSSILDPLAGDW 573 (688)
Q Consensus 496 ~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~s~ksDVwSlGviL~ELltG~~P~~~~~~--i~~~i~~~~l~~~ld~~~~~~ 573 (688)
. .....+||+.|||||++.+..|+.++|||||||+||||+||++||..... +...+..+.+. ..
T Consensus 180 ~------~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~--------~~ 245 (350)
T 4b9d_A 180 E------LARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKIISGSFP--------PV 245 (350)
T ss_dssp H------HHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCC--------CC
T ss_pred C------CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCC--------CC
T ss_conf 4------101457883603999987999895999999999999999787998996999999999808999--------99
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 979999999999872227999999992789999
Q 005616 574 PTFVARRLVDLGLQCCELYGRERPDITPSLVKE 606 (688)
Q Consensus 574 ~~~~~~~l~~Li~~Cl~~dP~~RPs~~~~i~~~ 606 (688)
+..++..+.+|+.+||+.||.+|||+.+.+.+.
T Consensus 246 ~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~hp 278 (350)
T 4b9d_A 246 SLHYSYDLRSLVSQLFKRNPRDRPSVNSILEKG 278 (350)
T ss_dssp CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSH
T ss_pred CCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCH
T ss_conf 755799999999998558966790899996399
No 6
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=394.82 Aligned_cols=242 Identities=21% Similarity=0.313 Sum_probs=204.6
Q ss_pred CCCCCCEEEECCCCEEEEEEEEC--CEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCC--CCCEEEEEEC
Q ss_conf 69543403401386589999998--9099999971389334699999999997079995125705337--8743588617
Q 005616 342 CNFSESFKVGQGGFGCVYKGEML--GRTVAIKMLYSHNMQGQLEFQQEVRVLSKLQHPHLVTLLGACP--EAWSLVYEYL 417 (688)
Q Consensus 342 ~~f~~~~~LG~G~fG~Vykg~~~--g~~VAIK~l~~~~~~~~~~f~~E~~iL~~l~HpnIV~l~g~~~--~~~~LV~E~~ 417 (688)
..|....+||+|+||.||+|+.. |..||||++..........+.+|+.+|+.++|||||++++++. +..+||||||
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~ 230 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 230 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred HHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 84386169624818489999999999899999986255468999999999998579989871689999899999999698
Q ss_pred CCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 89968888612499998999999999999999999985069981672899999622079996699105731001578876
Q 005616 418 PNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLY 497 (688)
Q Consensus 418 ~~gsL~~~L~~~~~~~~l~~~~~~~ia~qia~aL~yLH~~~~~~IiHrDIKp~NILLd~~~~~KL~DFGla~~~~~~~~~ 497 (688)
+||+|.+++.. ..+++..+..|+.||+.||.|||+.+ ||||||||+||||+.+|.+||+|||+|+.+.....
T Consensus 231 ~gG~L~~~i~~----~~l~e~~~~~~~~qil~aL~ylH~~~---IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~- 302 (423)
T 4fie_A 231 EGGALTDIVTH----TRMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP- 302 (423)
T ss_dssp TTEEHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSTTTEEECTTCCEEECCCTTCEECCSSCC-
T ss_pred CCCCHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHHHCC---EECCCCCHHHEEECCCCCEEEECCCCCEECCCCCC-
T ss_conf 99828988761----69899999999999999999999889---04465787778985899989803726547778876-
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHH--HHHHHCCCCCCCCCCCCCCCCH
Q ss_conf 77765568998898888801010499998202767999999998099999982578--9885219632235787899997
Q 005616 498 LPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEV--RRAVSCGKLSSILDPLAGDWPT 575 (688)
Q Consensus 498 ~~~~~~~~~~~Gt~~Y~APE~l~~~~~s~ksDVwSlGviL~ELltG~~P~~~~~~i--~~~i~~~~l~~~ld~~~~~~~~ 575 (688)
.....+||+.|||||++.+..|+.++|||||||++|||++|++||...... ...+..+.. +.. ..+.
T Consensus 303 -----~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~-----~~~-~~~~ 371 (423)
T 4fie_A 303 -----RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLP-----PRL-KNLH 371 (423)
T ss_dssp -----CBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCC-----CCC-SCTT
T ss_pred -----CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCC-----CCC-CCCC
T ss_conf -----43466647472799997799999689999999999999978799898699999999972799-----887-6501
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 999999999987222799999999278
Q 005616 576 FVARRLVDLGLQCCELYGRERPDITPS 602 (688)
Q Consensus 576 ~~~~~l~~Li~~Cl~~dP~~RPs~~~~ 602 (688)
.++..+.+|+.+||..||.+|||+.+.
T Consensus 372 ~~s~~~~dli~~~L~~dP~~R~ta~el 398 (423)
T 4fie_A 372 KVSPSLKGFLDRLLVRDPAQRATAAEL 398 (423)
T ss_dssp SSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred CCCHHHHHHHHHHCCCCHHHCCCHHHH
T ss_conf 299999999999867895689099999
No 7
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=393.74 Aligned_cols=242 Identities=21% Similarity=0.309 Sum_probs=204.4
Q ss_pred CCCCCCEEEECCCCEEEEEEEEC--CEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCC--CCCEEEEEEC
Q ss_conf 69543403401386589999998--9099999971389334699999999997079995125705337--8743588617
Q 005616 342 CNFSESFKVGQGGFGCVYKGEML--GRTVAIKMLYSHNMQGQLEFQQEVRVLSKLQHPHLVTLLGACP--EAWSLVYEYL 417 (688)
Q Consensus 342 ~~f~~~~~LG~G~fG~Vykg~~~--g~~VAIK~l~~~~~~~~~~f~~E~~iL~~l~HpnIV~l~g~~~--~~~~LV~E~~ 417 (688)
..|....+||+|+||.||+|+.. |..||||++..........+.+|+.+|+.++|||||++++++. +..+||||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 75387079602728299999998999899999985276568999999999998679989991999999899999999698
Q ss_pred CCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 89968888612499998999999999999999999985069981672899999622079996699105731001578876
Q 005616 418 PNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLY 497 (688)
Q Consensus 418 ~~gsL~~~L~~~~~~~~l~~~~~~~ia~qia~aL~yLH~~~~~~IiHrDIKp~NILLd~~~~~KL~DFGla~~~~~~~~~ 497 (688)
+||+|.+++.. ..+++..+..|+.||+.||.|||+.+ ||||||||+||||+.+|.+||+|||+|+.+.....
T Consensus 154 ~gg~L~~~l~~----~~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~- 225 (346)
T 4fih_A 154 EGGALTDIVTH----TRMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP- 225 (346)
T ss_dssp TTEEHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSSSC-
T ss_pred CCCCHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEECCCCCEECCCCCC-
T ss_conf 99808999871----89899999999999999999999888---35562788997887999889902757536678877-
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHH--HHHHHCCCCCCCCCCCCCCCCH
Q ss_conf 77765568998898888801010499998202767999999998099999982578--9885219632235787899997
Q 005616 498 LPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEV--RRAVSCGKLSSILDPLAGDWPT 575 (688)
Q Consensus 498 ~~~~~~~~~~~Gt~~Y~APE~l~~~~~s~ksDVwSlGviL~ELltG~~P~~~~~~i--~~~i~~~~l~~~ld~~~~~~~~ 575 (688)
.....+||+.|||||++.+..|+.++|||||||++|||++|++||...... ...+..+.. +. ...+.
T Consensus 226 -----~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~-----~~-~~~~~ 294 (346)
T 4fih_A 226 -----RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLP-----PR-LKNLH 294 (346)
T ss_dssp -----CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSC-----CC-CSCGG
T ss_pred -----CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCC-----CC-CCCCC
T ss_conf -----53465627582799997799999689999999999999978799898599999999971799-----98-87502
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 999999999987222799999999278
Q 005616 576 FVARRLVDLGLQCCELYGRERPDITPS 602 (688)
Q Consensus 576 ~~~~~l~~Li~~Cl~~dP~~RPs~~~~ 602 (688)
.++..+.+|+.+||..||.+|||+.+.
T Consensus 295 ~~s~~~~dli~~~L~~dP~~R~ta~e~ 321 (346)
T 4fih_A 295 KVSPSLKGFLDRLLVRDPAQRATAAEL 321 (346)
T ss_dssp GSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred CCCHHHHHHHHHHCCCCHHHCCCHHHH
T ss_conf 299999999999867995689099999
No 8
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=391.75 Aligned_cols=261 Identities=29% Similarity=0.447 Sum_probs=212.0
Q ss_pred HHHHHHHCCCCCCEEEECCCCEEEEEEEECC-------EEEEEEEEECCCCC-CHHHHHHHHHHHHCCCC-CCEEEEECC
Q ss_conf 8899872695434034013865899999989-------09999997138933-46999999999970799-951257053
Q 005616 335 ADLQTATCNFSESFKVGQGGFGCVYKGEMLG-------RTVAIKMLYSHNMQ-GQLEFQQEVRVLSKLQH-PHLVTLLGA 405 (688)
Q Consensus 335 ~el~~at~~f~~~~~LG~G~fG~Vykg~~~g-------~~VAIK~l~~~~~~-~~~~f~~E~~iL~~l~H-pnIV~l~g~ 405 (688)
++-+...++|...+.||+|+||.||+|.+.+ ..||||++...... ....|.+|+.++.+++| ||||+++|+
T Consensus 57 ~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~ 136 (353)
T 4ase_A 57 SKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGA 136 (353)
T ss_dssp HHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred CCCEECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf 55170579959820982178959999998688854477599999976235868999999999999975799848778899
Q ss_pred CCC---CCEEEEEECCCCCHHHHHCCCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf 378---74358861789968888612499-------------99899999999999999999998506998167289999
Q 005616 406 CPE---AWSLVYEYLPNGSLQDRLFRKSN-------------VSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKP 469 (688)
Q Consensus 406 ~~~---~~~LV~E~~~~gsL~~~L~~~~~-------------~~~l~~~~~~~ia~qia~aL~yLH~~~~~~IiHrDIKp 469 (688)
|.+ ..++|||||++|+|.++|..... ...++|..++.|+.|||.||.|||+.+ ||||||||
T Consensus 137 ~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~---iiHRDLK~ 213 (353)
T 4ase_A 137 CTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRDLAA 213 (353)
T ss_dssp ECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSG
T ss_pred EEECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC---EECCCCCC
T ss_conf 994697799999838989799999743566654333410110356899999999999999987676278---43574672
Q ss_pred CCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHH-CCCCCC
Q ss_conf 9622079996699105731001578876777655689988988888010104999982027679999999980-999999
Q 005616 470 QNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLT-GRLPVG 548 (688)
Q Consensus 470 ~NILLd~~~~~KL~DFGla~~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~s~ksDVwSlGviL~ELlt-G~~P~~ 548 (688)
+|||++.++.+||+|||+|+.+..+... .......||+.|||||++.+..|+.++|||||||+||||+| |+.||.
T Consensus 214 ~NILl~~~~~vKi~DFGlar~~~~~~~~----~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~ 289 (353)
T 4ase_A 214 RNILLSEKNVVKICDFGLARDIYKDPDY----VRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYP 289 (353)
T ss_dssp GGEEECGGGCEEECCCGGGSCTTTCTTS----EEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSST
T ss_pred CCEEECCCCCEEECCCHHHHHCCCCCCC----EEECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCCC
T ss_conf 1130579997897965432224568872----032540146665698999469999755374068999999818999999
Q ss_pred CHH---HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 825---789885219632235787899997999999999987222799999999278999999843
Q 005616 549 LAG---EVRRAVSCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLH 611 (688)
Q Consensus 549 ~~~---~i~~~i~~~~l~~~ld~~~~~~~~~~~~~l~~Li~~Cl~~dP~~RPs~~~~i~~~Le~l~ 611 (688)
... .+...+..+.. ...|..++..+.+|+.+||+.||.+|||+. ++++.|+.+.
T Consensus 290 ~~~~~~~~~~~i~~g~~--------~~~p~~~~~~~~~li~~c~~~dP~~RPt~~-eil~~L~~ll 346 (353)
T 4ase_A 290 GVKIDEEFCRRLKEGTR--------MRAPDYTTPEMYQTMLDCWHGEPSQRPTFS-ELVEHLGNLL 346 (353)
T ss_dssp TCCCSHHHHHHHHHTCC--------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHH-HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCC--------CCCCCCCCHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHHH
T ss_conf 98989999999973898--------888865789999999997686966793999-9999999999
No 9
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=386.73 Aligned_cols=251 Identities=23% Similarity=0.247 Sum_probs=203.3
Q ss_pred HCCCCCCEEEECCCCEEEEEEEEC--CEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCC--CCEEEEEE
Q ss_conf 269543403401386589999998--90999999713893346999999999970799951257053378--74358861
Q 005616 341 TCNFSESFKVGQGGFGCVYKGEML--GRTVAIKMLYSHNMQGQLEFQQEVRVLSKLQHPHLVTLLGACPE--AWSLVYEY 416 (688)
Q Consensus 341 t~~f~~~~~LG~G~fG~Vykg~~~--g~~VAIK~l~~~~~~~~~~f~~E~~iL~~l~HpnIV~l~g~~~~--~~~LV~E~ 416 (688)
...|....+||+|+||.||+|++. |..||||+++.... +.+|+.++..++|||||++++++.+ ..+|||||
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy 131 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMEL 131 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred HHHEEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHHH-----HHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 3351768685138780999999889998999999788886-----99999999857998999399999989999999966
Q ss_pred CCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCC-CEEEEECCCCCCCCCCC
Q ss_conf 78996888861249999899999999999999999998506998167289999962207999-66991057310015788
Q 005616 417 LPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSEL-SSKICDFGICRLVTEDT 495 (688)
Q Consensus 417 ~~~gsL~~~L~~~~~~~~l~~~~~~~ia~qia~aL~yLH~~~~~~IiHrDIKp~NILLd~~~-~~KL~DFGla~~~~~~~ 495 (688)
|+||+|.++|.... .+++..+..|+.||+.||.|||+.+ ||||||||+||||+.+| .+||+|||+|+.+....
T Consensus 132 ~~gg~L~~~l~~~~---~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~ 205 (336)
T 4g3f_A 132 LEGGSLGQLIKQMG---CLPEDRALYYLGQALEGLEYLHTRR---ILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDG 205 (336)
T ss_dssp CTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCCGGGEEECTTSCCEEECCCTTCEEC----
T ss_pred CCCCCHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHCC---CEECCCCHHHEEEECCCCEEEEEECCCCEECCCCC
T ss_conf 59986999998769---9999999999999999999999889---04261677887995899979996278776856787
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHH--HHHHHHCCCCCCCCCCCCCCC
Q ss_conf 767776556899889888880101049999820276799999999809999998257--898852196322357878999
Q 005616 496 LYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGE--VRRAVSCGKLSSILDPLAGDW 573 (688)
Q Consensus 496 ~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~s~ksDVwSlGviL~ELltG~~P~~~~~~--i~~~i~~~~l~~~ld~~~~~~ 573 (688)
... ........+||+.|||||++.+..|+.++|||||||+||||+||++||..... +...+..+.. .....
T Consensus 206 ~~~-~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~------~~~~~ 278 (336)
T 4g3f_A 206 LGK-SLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIASEPP------PIREI 278 (336)
T ss_dssp ---------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHHHSCC------GGGGS
T ss_pred CCC-CEECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCC------CCHHC
T ss_conf 654-02217854558020089998899989089999999999999978699899899999999980899------80025
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 9799999999998722279999999927899999984
Q 005616 574 PTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQL 610 (688)
Q Consensus 574 ~~~~~~~l~~Li~~Cl~~dP~~RPs~~~~i~~~Le~l 610 (688)
+..++..+.+|+.+||+.||.+|||+. ++.+.|...
T Consensus 279 ~~~~s~~~~~li~~~L~~dP~~R~sa~-el~~~l~~~ 314 (336)
T 4g3f_A 279 PPSCAPLTAQAIQEGLRKEPVHRASAM-ELRRKVGKA 314 (336)
T ss_dssp CTTSCHHHHHHHHHHTCSSGGGSCCHH-HHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHH
T ss_conf 866799999999997628976895999-999999999
No 10
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=1.00 E-value=1 Score=385.31 Aligned_cols=260 Identities=25% Similarity=0.311 Sum_probs=200.1
Q ss_pred CCCCCCEEEECCCCEEEEEEEECCEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCC------CCEEEEE
Q ss_conf 6954340340138658999999890999999713893346999999999970799951257053378------7435886
Q 005616 342 CNFSESFKVGQGGFGCVYKGEMLGRTVAIKMLYSHNMQGQLEFQQEVRVLSKLQHPHLVTLLGACPE------AWSLVYE 415 (688)
Q Consensus 342 ~~f~~~~~LG~G~fG~Vykg~~~g~~VAIK~l~~~~~~~~~~f~~E~~iL~~l~HpnIV~l~g~~~~------~~~LV~E 415 (688)
.+|...++||+|+||.||+|++.|..||||++..... ....+..|+..+.+++|||||+++|+|.+ ..+||||
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~~g~~VAvK~l~~~~~-~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~E 81 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSREE-RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSD 81 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETTEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEE
T ss_pred CEEEEEEEEEECCCEEEEEEEECCEEEEEEEECCCCH-HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEEC
T ss_conf 5899978984089939999999998999999883133-669999999998608999887099999846887237887751
Q ss_pred ECCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC-----CCCEEECCCCCCCEEECCCCCEEEEECCCCCC
Q ss_conf 1789968888612499998999999999999999999985069-----98167289999962207999669910573100
Q 005616 416 YLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSK-----PEKIVHGDLKPQNILLDSELSSKICDFGICRL 490 (688)
Q Consensus 416 ~~~~gsL~~~L~~~~~~~~l~~~~~~~ia~qia~aL~yLH~~~-----~~~IiHrDIKp~NILLd~~~~~KL~DFGla~~ 490 (688)
||++|+|.++|... .++|..+++|+.|++.||.|||+.. .++|+||||||+||||+.++.+||+|||+|+.
T Consensus 82 y~~~gsL~~~l~~~----~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~ 157 (303)
T 3hmm_A 82 YHEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVR 157 (303)
T ss_dssp CCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred CCCCCCHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCC
T ss_conf 78999689999757----99989999999999999999998524004789876246784208998899789984798745
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC------CCCCCCHHHHHHHHHHHHHHCCCCCCCHH-------------
Q ss_conf 15788767776556899889888880101049------99982027679999999980999999825-------------
Q 005616 491 VTEDTLYLPSFHRSTAPKGSFPYADPEYHRTG------VLTPKSDSYSFGLIILQLLTGRLPVGLAG------------- 551 (688)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~------~~s~ksDVwSlGviL~ELltG~~P~~~~~------------- 551 (688)
........ .......+||+.|||||++.+. .++.++|||||||+||||+||.+|+....
T Consensus 158 ~~~~~~~~--~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~ 235 (303)
T 3hmm_A 158 HDSATDTI--DIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSD 235 (303)
T ss_dssp EETTTTEE--SCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSS
T ss_pred CCCCCCCE--EEECCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCC
T ss_conf 56777732--2104642466462698884565455677657067666479999999878998776652235310025454
Q ss_pred ----HHHHHHHCCCCCCCCCCCCCC--CCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf ----789885219632235787899--99799999999998722279999999927899999984300
Q 005616 552 ----EVRRAVSCGKLSSILDPLAGD--WPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVA 613 (688)
Q Consensus 552 ----~i~~~i~~~~l~~~ld~~~~~--~~~~~~~~l~~Li~~Cl~~dP~~RPs~~~~i~~~Le~l~~~ 613 (688)
.+...+..+ .++|.... .+...+..+.+|+.+||+.||.+|||+. ++++.|+.+...
T Consensus 236 ~~~~~~~~~~~~~----~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~-ei~~~L~~l~~~ 298 (303)
T 3hmm_A 236 PSVEEMRKVVCEQ----KLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTAL-RIKKTLSQLSQQ 298 (303)
T ss_dssp CCHHHHHHHHTTS----CCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHH-HHHHHHHHHHHC
T ss_pred CHHHHHHHHHHCC----CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHHHHH
T ss_conf 3099999987502----57998876556658999999999997605975795999-999999988987
Done!