Query 005617
Match_columns 688
No_of_seqs 459 out of 2989
Neff 7.3
Searched_HMMs 29240
Date Tue Mar 26 18:41:11 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005617.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2121-2125//hhsearch_pdb/005617hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoj_A High affinity nerve gro 1.0 1 1 408.2 21.5 255 342-612 41-319 (329)
2 4asz_A BDNF/NT-3 growth factor 1.0 1 1 406.7 17.9 255 342-612 13-289 (299)
3 3omv_A RAF proto-oncogene seri 1.0 1 1 405.9 21.7 256 342-612 36-300 (307)
4 4gt4_A Tyrosine-protein kinase 1.0 1 1 403.8 19.8 252 343-610 27-304 (308)
5 4b9d_A Serine/threonine-protei 1.0 1 1 396.2 16.0 248 342-607 24-279 (350)
6 4fie_A Serine/threonine-protei 1.0 1 1 395.7 22.0 243 342-603 151-399 (423)
7 4fih_A Serine/threonine-protei 1.0 1 1 394.6 20.5 242 342-602 74-321 (346)
8 4ase_A Vascular endothelial gr 1.0 1 1 392.8 17.3 264 332-611 54-346 (353)
9 4g3f_A NF-kappa-beta-inducing 1.0 1 1 387.5 20.1 251 341-610 57-314 (336)
10 4aw0_A HPDK1, 3-phosphoinositi 1.0 1 1 385.9 19.2 242 342-602 32-282 (311)
No 1
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=408.22 Aligned_cols=255 Identities=26% Similarity=0.432 Sum_probs=214.0
Q ss_pred CCCCCCEEEECCCCEEEEEEEEC-------CEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCC--CCEE
Q ss_conf 69532303401386589999998-------90999999723893346999999999970799941247054478--7423
Q 005617 342 CNFSESFKVGQGGFGCVYKGEML-------GRTVAIKMLYSHNMQGQLEFQQEVRVLSKLQHPHLVTLLGACPE--AWSL 412 (688)
Q Consensus 342 ~~f~~~~~LG~G~fG~Vykg~~~-------g~~VAIK~l~~~~~~~~~~f~~E~~iL~~l~HpnIV~l~g~~~~--~~~L 412 (688)
.+|...++||+|+||.||+|++. +..||||+++.........|.+|+.++++++|||||+++|+|.+ ..+|
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 99288779714778489989987866577896999999775797999999999999985899899969899998998999
Q ss_pred EEECCCCCCHHHHHCCCCC------------CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCE
Q ss_conf 7760789967888612499------------9989999999999999999999850699815718999996220799976
Q 005617 413 VYEYLPNGSLQDRLFRKSN------------VSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSS 480 (688)
Q Consensus 413 V~E~~~~gsL~~~L~~~~~------------~~~l~~~~~~~ia~qia~aL~yLH~~~~~~IiHrDIKp~NILLd~~~~v 480 (688)
|||||++|+|.++|..... ..+++|..++.|+.|||.||.|||+.+ ||||||||+||||+.++.+
T Consensus 121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLKp~NILl~~~~~~ 197 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH---FVHRDLATRNCLVGQGLVV 197 (329)
T ss_dssp EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTTEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC---EECCCCCHHHEEECCCCCE
T ss_conf 9982799939999986075410012211245788999999999999999999984088---4226666764898899968
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCHHH--HHHHH
Q ss_conf 99105731001578876777655689988988888120104999982027679999999980-9999998156--89885
Q 005617 481 KICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLT-GRLPVGLAGE--VRRAV 557 (688)
Q Consensus 481 KL~DFGla~~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~~~~~~~s~ksDVwSlGviL~ELlt-G~~Pf~~~~~--i~~~i 557 (688)
||+|||+|+........ .......||+.|||||++.+..|+.++|||||||+||||+| |+.||..... +...+
T Consensus 198 Ki~DFGla~~~~~~~~~----~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i 273 (329)
T 4aoj_A 198 KIGDFGMSRDIYSTDYY----RVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCI 273 (329)
T ss_dssp EECCCC--------------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHHHHHHH
T ss_pred EECCCCCCEECCCCCCC----EECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 97666033365678753----00476455656658265447999966300105789999982899999998999999999
Q ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 2196322357888999979999999999982126999999993689999998530
Q 005617 558 SCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHV 612 (688)
Q Consensus 558 ~~~~l~~~ld~~~~~~~~~~~~~l~~Li~~Cl~~dP~~RPs~~~~i~~~L~~l~~ 612 (688)
..+.. ...|..++..+.+|+.+||+.||.+|||+. +++..|+.+..
T Consensus 274 ~~g~~--------~~~p~~~~~~~~~li~~cl~~dP~~RPs~~-ei~~~L~~l~~ 319 (329)
T 4aoj_A 274 TQGRE--------LERPRACPPEVYAIMRGCWQREPQQRHSIK-DVHARLQALAQ 319 (329)
T ss_dssp HHTCC--------CCCCTTCCHHHHHHHHHHCCSSTTTSCCHH-HHHHHHHHHHH
T ss_pred HCCCC--------CCCCCCCCHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHHHH
T ss_conf 80898--------998644639999999997475965792999-99999998745
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=406.67 Aligned_cols=255 Identities=28% Similarity=0.449 Sum_probs=214.1
Q ss_pred CCCCCCEEEECCCCEEEEEEEEC-------CEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCC--CCEE
Q ss_conf 69532303401386589999998-------90999999723893346999999999970799941247054478--7423
Q 005617 342 CNFSESFKVGQGGFGCVYKGEML-------GRTVAIKMLYSHNMQGQLEFQQEVRVLSKLQHPHLVTLLGACPE--AWSL 412 (688)
Q Consensus 342 ~~f~~~~~LG~G~fG~Vykg~~~-------g~~VAIK~l~~~~~~~~~~f~~E~~iL~~l~HpnIV~l~g~~~~--~~~L 412 (688)
++|...+.||+|+||.||+|++. +..||||+++.........|.+|+.++++++|||||+++|+|.+ ..+|
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 89298249820788299999987766677887999999677785899999999999985899888628799956998999
Q ss_pred EEECCCCCCHHHHHCCCC----------CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEE
Q ss_conf 776078996788861249----------9998999999999999999999985069981571899999622079997699
Q 005617 413 VYEYLPNGSLQDRLFRKS----------NVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKI 482 (688)
Q Consensus 413 V~E~~~~gsL~~~L~~~~----------~~~~l~~~~~~~ia~qia~aL~yLH~~~~~~IiHrDIKp~NILLd~~~~vKL 482 (688)
|||||++|+|.++|.... ....++|..++.|+.|||.||.|||+.+ |+||||||+||||+.++.+||
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDlKp~NILl~~~~~~Ki 169 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQH---FVHRDLATRNCLVGENLLVKI 169 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEE
T ss_conf 99858999689999860864211123577788999999999999999999997599---046765776389879986898
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCHH--HHHHHHHC
Q ss_conf 105731001578876777655689988988888120104999982027679999999980-999999815--68988521
Q 005617 483 CDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLT-GRLPVGLAG--EVRRAVSC 559 (688)
Q Consensus 483 ~DFGla~~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~~~~~~~s~ksDVwSlGviL~ELlt-G~~Pf~~~~--~i~~~i~~ 559 (688)
+|||+|+........ .......||+.|||||++.+..|+.++|||||||+||||+| |+.||.... .+...+..
T Consensus 170 ~DFGla~~~~~~~~~----~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~ 245 (299)
T 4asz_A 170 GDFGMSRDVYSTDYY----RVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQ 245 (299)
T ss_dssp CCCSCHHHHTGGGCE----EETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHH
T ss_pred CCCCCCEECCCCCCE----EECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHC
T ss_conf 873001006788741----6647513470103889870799970366778899999998089999999899999999980
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 96322357888999979999999999982126999999993689999998530
Q 005617 560 GKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHV 612 (688)
Q Consensus 560 ~~l~~~ld~~~~~~~~~~~~~l~~Li~~Cl~~dP~~RPs~~~~i~~~L~~l~~ 612 (688)
+... ..|..++..+.+|+.+||+.||.+||++. .+...|+.+..
T Consensus 246 ~~~~--------~~p~~~~~~~~~li~~cl~~dP~~RPs~~-~i~~~L~~~~~ 289 (299)
T 4asz_A 246 GRVL--------QRPRTCPQEVYELMLGCWQREPHMRKNIK-GIHTLLQNLAK 289 (299)
T ss_dssp TCCC--------CCCTTCCHHHHHHHHHHTCSSGGGSCCHH-HHHHHHHHHHH
T ss_pred CCCC--------CCCCCCHHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHHHH
T ss_conf 8988--------99741439999999997687966892999-99999987776
No 3
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=405.95 Aligned_cols=256 Identities=28% Similarity=0.454 Sum_probs=209.2
Q ss_pred CCCCCCEEEECCCCEEEEEEEECCEEEEEEEEECCCC--CCHHHHHHHHHHHHCCCCCCEEEEECCCCC-CCEEEEECCC
Q ss_conf 6953230340138658999999890999999723893--346999999999970799941247054478-7423776078
Q 005617 342 CNFSESFKVGQGGFGCVYKGEMLGRTVAIKMLYSHNM--QGQLEFQQEVRVLSKLQHPHLVTLLGACPE-AWSLVYEYLP 418 (688)
Q Consensus 342 ~~f~~~~~LG~G~fG~Vykg~~~g~~VAIK~l~~~~~--~~~~~f~~E~~iL~~l~HpnIV~l~g~~~~-~~~LV~E~~~ 418 (688)
++|....+||+|+||+||+|++.+ .||||+++.... .....|.+|+.++++++|||||+++|+|.+ ..+||||||+
T Consensus 36 ~~l~l~~~iG~G~fG~Vy~~~~~~-~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~iVmEy~~ 114 (307)
T 3omv_A 36 SEVMLSTRIGSGSFGTVYKGKWHG-DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQWCE 114 (307)
T ss_dssp TSCCEEEECCCCSSSEEEEEESSS-EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEECCS
T ss_pred HHEEEEEEEEECCCCEEEEEEECC-CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEEEEEECCC
T ss_conf 994984498208886899999899-6899999726899999999999999998589988746999997895899997489
Q ss_pred CCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 99678886124999989999999999999999999850699815718999996220799976991057310015788767
Q 005617 419 NGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYL 498 (688)
Q Consensus 419 ~gsL~~~L~~~~~~~~l~~~~~~~ia~qia~aL~yLH~~~~~~IiHrDIKp~NILLd~~~~vKL~DFGla~~~~~~~~~~ 498 (688)
+|+|.++|.... ..++|..++.|+.|||.||.|||+.+ ||||||||+||||+.++.+||+|||+|+........
T Consensus 115 gGsL~~~l~~~~--~~l~~~~~~~i~~qia~gL~yLH~~~---IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~- 188 (307)
T 3omv_A 115 GSSLYKHLHVQE--TKFQMFQLIDIARQTAQGMDYLHAKN---IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGS- 188 (307)
T ss_dssp SCBHHHHHHTSC--CCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCCSSSEEEETTEEEEECCCSSCBC--------
T ss_pred CCCHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEEECCCCEECCCCCCC-
T ss_conf 987889875248--99999999999999999999997799---527855789978889990899441575424667764-
Q ss_pred CCCCCCCCCCCCCCCCCHHHHCC---CCCCCCCHHHHHHHHHHHHHHCCCCCCCHHH---HHHHHHCCCCCCCCCCCCCC
Q ss_conf 77655689988988888120104---9999820276799999999809999998156---89885219632235788899
Q 005617 499 PSFHRSTAPKGSFPYADPEYHRT---GVLTPKSDSYSFGLIILQLLTGRLPVGLAGE---VRRAVSCGKLSSILDPLAGD 572 (688)
Q Consensus 499 ~~~~~~~~~~Gt~~Y~APE~~~~---~~~s~ksDVwSlGviL~ELltG~~Pf~~~~~---i~~~i~~~~l~~~ld~~~~~ 572 (688)
......+||+.|||||++.+ +.|+.++|||||||+||||+||+.||..... +...+..+.. .|....
T Consensus 189 ---~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~~~~~~----~p~~~~ 261 (307)
T 3omv_A 189 ---QQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYA----SPDLSK 261 (307)
T ss_dssp --------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHTTCC----CCCSTT
T ss_pred ---EEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCC----CCCCCC
T ss_conf ---0315644687724987861468998786877572899999999788998999969999999965888----887200
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9979999999999982126999999993689999998530
Q 005617 573 WPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHV 612 (688)
Q Consensus 573 ~~~~~~~~l~~Li~~Cl~~dP~~RPs~~~~i~~~L~~l~~ 612 (688)
.+..++..+.+|+.+||+.||.+|||+. +++..|+.+.-
T Consensus 262 ~~~~~~~~l~~li~~cl~~dP~~RPs~~-ei~~~Le~l~~ 300 (307)
T 3omv_A 262 LYKNCPKAMKRLVADCVKKVKEERPLFP-QILSSIELLQH 300 (307)
T ss_dssp SCTTSCHHHHHHHHHHTCSSSTTSCCHH-HHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHHHC
T ss_conf 3544569999999997577976890989-99999999745
No 4
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=403.83 Aligned_cols=252 Identities=27% Similarity=0.433 Sum_probs=208.3
Q ss_pred CCCCCEEEECCCCEEEEEEEEC-------CEEEEEEEEECCCC-CCHHHHHHHHHHHHCCCCCCEEEEECCCCC--CCEE
Q ss_conf 9532303401386589999998-------90999999723893-346999999999970799941247054478--7423
Q 005617 343 NFSESFKVGQGGFGCVYKGEML-------GRTVAIKMLYSHNM-QGQLEFQQEVRVLSKLQHPHLVTLLGACPE--AWSL 412 (688)
Q Consensus 343 ~f~~~~~LG~G~fG~Vykg~~~-------g~~VAIK~l~~~~~-~~~~~f~~E~~iL~~l~HpnIV~l~g~~~~--~~~L 412 (688)
++.+.++||+|+||.||+|.+. +..||||+++.... .....|.+|+.++++++|||||+++|+|.+ ..+|
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~l 106 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSM 106 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred HCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEE
T ss_conf 88586691358884899999857765888869999998801496899999999999985899898773649988998899
Q ss_pred EEECCCCCCHHHHHCCCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCC
Q ss_conf 7760789967888612499-------------998999999999999999999985069981571899999622079997
Q 005617 413 VYEYLPNGSLQDRLFRKSN-------------VSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELS 479 (688)
Q Consensus 413 V~E~~~~gsL~~~L~~~~~-------------~~~l~~~~~~~ia~qia~aL~yLH~~~~~~IiHrDIKp~NILLd~~~~ 479 (688)
|||||++|+|.++|..... ...++|..++.|+.|||.||.|||+.+ ||||||||+||||+.++.
T Consensus 107 V~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLK~~NILl~~~~~ 183 (308)
T 4gt4_A 107 IFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHH---VVHKDLATRNVLVYDKLN 183 (308)
T ss_dssp EEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGC
T ss_pred EEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCEEECCCCC
T ss_conf 99818999499999862765433332211112468999999999999999999998689---977873623068879997
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCHHH--HHHH
Q ss_conf 699105731001578876777655689988988888120104999982027679999999980-9999998156--8988
Q 005617 480 SKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLT-GRLPVGLAGE--VRRA 556 (688)
Q Consensus 480 vKL~DFGla~~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~~~~~~~s~ksDVwSlGviL~ELlt-G~~Pf~~~~~--i~~~ 556 (688)
+||+|||+|+........ .......||+.|||||++.++.|+.++|||||||+||||+| |..||..... +...
T Consensus 184 ~Ki~DFGlar~~~~~~~~----~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~~~~~ 259 (308)
T 4gt4_A 184 VKISDLGLFREVYAADYY----KLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEM 259 (308)
T ss_dssp EEECCSCCBCGGGGGGCB----CSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHH
T ss_pred EEECCCCCCEECCCCCCE----EEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 898876020233677740----4734512577656989982799996300015799999999689999999899999999
Q ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 521963223578889999799999999999821269999999936899999985
Q 005617 557 VSCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQL 610 (688)
Q Consensus 557 i~~~~l~~~ld~~~~~~~~~~~~~l~~Li~~Cl~~dP~~RPs~~~~i~~~L~~l 610 (688)
+..+... ..|..++..+.+|+.+||+.||.+||++. +|+..|+.+
T Consensus 260 i~~~~~~--------~~p~~~~~~~~~li~~C~~~dP~~RPs~~-ei~~~L~a~ 304 (308)
T 4gt4_A 260 IRNRQVL--------PCPDDCPAWVYALMIECWNEFPSRRPRFK-DIHSRLRAW 304 (308)
T ss_dssp HHTTCCC--------CCCTTCCHHHHHHHHHHTCSSGGGSCCHH-HHHHHHHTS
T ss_pred HHCCCCC--------CCCCCCHHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHC
T ss_conf 9819989--------99620369999999997587965792999-999999853
No 5
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=396.17 Aligned_cols=248 Identities=25% Similarity=0.339 Sum_probs=206.6
Q ss_pred CCCCCCEEEECCCCEEEEEEEEC--CEEEEEEEEECCCCC--CHHHHHHHHHHHHCCCCCCEEEEECCCCC--CCEEEEE
Q ss_conf 69532303401386589999998--909999997238933--46999999999970799941247054478--7423776
Q 005617 342 CNFSESFKVGQGGFGCVYKGEML--GRTVAIKMLYSHNMQ--GQLEFQQEVRVLSKLQHPHLVTLLGACPE--AWSLVYE 415 (688)
Q Consensus 342 ~~f~~~~~LG~G~fG~Vykg~~~--g~~VAIK~l~~~~~~--~~~~f~~E~~iL~~l~HpnIV~l~g~~~~--~~~LV~E 415 (688)
++|...+.||+|+||.||+|+.. |..||||++...... ....|.+|+.++++++|||||++++++.+ ..+||||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 25588479702779399999988999899999986587897999999999999987799898919999998999999994
Q ss_pred CCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCC
Q ss_conf 07899678886124999989999999999999999999850699815718999996220799976991057310015788
Q 005617 416 YLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDT 495 (688)
Q Consensus 416 ~~~~gsL~~~L~~~~~~~~l~~~~~~~ia~qia~aL~yLH~~~~~~IiHrDIKp~NILLd~~~~vKL~DFGla~~~~~~~ 495 (688)
||+||+|.++|..... ..+++..+..|+.||+.||.|||+.+ |+||||||+||||+.++.+||+|||+|+.+....
T Consensus 104 y~~gg~L~~~i~~~~~-~~~~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~ 179 (350)
T 4b9d_A 104 YCEGGDLFKRINAQKG-VLFQEDQILDWFVQICLALKHVHDRK---ILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTV 179 (350)
T ss_dssp CCTTCBHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHHHHHTT---CEETTCCGGGEEECTTCCEEECSTTEESCCCHHH
T ss_pred CCCCCCHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHCC---EEECCCCHHHEEECCCCCEEECCCCCCEEECCCC
T ss_conf 8899839999997389-99978999999999999999999899---1513597899798789998976465214406885
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHH--HHHHHHCCCCCCCCCCCCCCC
Q ss_conf 767776556899889888881201049999820276799999999809999998156--898852196322357888999
Q 005617 496 LYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGE--VRRAVSCGKLSSILDPLAGDW 573 (688)
Q Consensus 496 ~~~~~~~~~~~~~Gt~~Y~APE~~~~~~~s~ksDVwSlGviL~ELltG~~Pf~~~~~--i~~~i~~~~l~~~ld~~~~~~ 573 (688)
. .....+||+.|||||++.+..|+.++|||||||+||||+||++||..... +...+..+... ..
T Consensus 180 ~------~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~--------~~ 245 (350)
T 4b9d_A 180 E------LARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKIISGSFP--------PV 245 (350)
T ss_dssp H------HHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCC--------CC
T ss_pred C------CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCC--------CC
T ss_conf 4------101457883603999987999895999999999999999787998996999999999808999--------99
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 9799999999999821269999999936899999
Q 005617 574 PTFVARRLVDLGLQCCELYGRERPDITPSLVKEL 607 (688)
Q Consensus 574 ~~~~~~~l~~Li~~Cl~~dP~~RPs~~~~i~~~L 607 (688)
+..++..+.+|+.+||+.||.+||++.+.+.+.+
T Consensus 246 ~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~hp~ 279 (350)
T 4b9d_A 246 SLHYSYDLRSLVSQLFKRNPRDRPSVNSILEKGF 279 (350)
T ss_dssp CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSHH
T ss_pred CCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCHH
T ss_conf 7557999999999985589667908999963997
No 6
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=395.71 Aligned_cols=243 Identities=21% Similarity=0.316 Sum_probs=205.0
Q ss_pred CCCCCCEEEECCCCEEEEEEEEC--CEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCC--CCCEEEEECC
Q ss_conf 69532303401386589999998--9099999972389334699999999997079994124705447--8742377607
Q 005617 342 CNFSESFKVGQGGFGCVYKGEML--GRTVAIKMLYSHNMQGQLEFQQEVRVLSKLQHPHLVTLLGACP--EAWSLVYEYL 417 (688)
Q Consensus 342 ~~f~~~~~LG~G~fG~Vykg~~~--g~~VAIK~l~~~~~~~~~~f~~E~~iL~~l~HpnIV~l~g~~~--~~~~LV~E~~ 417 (688)
..|....+||+|+||.||+|... |..||||++..........+.+|+.+|+.++|||||+++++|. +..+||||||
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~ 230 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 230 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred HHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 84386169624818489999999999899999986255468999999999998579989871689999899999999698
Q ss_pred CCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 89967888612499998999999999999999999985069981571899999622079997699105731001578876
Q 005617 418 PNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLY 497 (688)
Q Consensus 418 ~~gsL~~~L~~~~~~~~l~~~~~~~ia~qia~aL~yLH~~~~~~IiHrDIKp~NILLd~~~~vKL~DFGla~~~~~~~~~ 497 (688)
+||+|.+++... .+++..+..|+.||+.||.|||+.+ ||||||||+||||+.+|.+||+|||+|+.+.....
T Consensus 231 ~gG~L~~~i~~~----~l~e~~~~~~~~qil~aL~ylH~~~---IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~- 302 (423)
T 4fie_A 231 EGGALTDIVTHT----RMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP- 302 (423)
T ss_dssp TTEEHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSTTTEEECTTCCEEECCCTTCEECCSSCC-
T ss_pred CCCCHHHHHHCC----CCCHHHHHHHHHHHHHHHHHHHHCC---EECCCCCHHHEEECCCCCEEEECCCCCEECCCCCC-
T ss_conf 998289887616----9899999999999999999999889---04465787778985899989803726547778876-
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHH--HHHHHCCCCCCCCCCCCCCCCH
Q ss_conf 77765568998898888812010499998202767999999998099999981568--9885219632235788899997
Q 005617 498 LPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEV--RRAVSCGKLSSILDPLAGDWPT 575 (688)
Q Consensus 498 ~~~~~~~~~~~Gt~~Y~APE~~~~~~~s~ksDVwSlGviL~ELltG~~Pf~~~~~i--~~~i~~~~l~~~ld~~~~~~~~ 575 (688)
.....+||+.|||||++.+..|+.++|||||||++|||++|++||...... ...+..+.. +.. ..+.
T Consensus 303 -----~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~-----~~~-~~~~ 371 (423)
T 4fie_A 303 -----RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLP-----PRL-KNLH 371 (423)
T ss_dssp -----CBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCC-----CCC-SCTT
T ss_pred -----CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCC-----CCC-CCCC
T ss_conf -----43466647472799997799999689999999999999978799898699999999972799-----887-6501
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 9999999999982126999999993689
Q 005617 576 FVARRLVDLGLQCCELYGRERPDITPSL 603 (688)
Q Consensus 576 ~~~~~l~~Li~~Cl~~dP~~RPs~~~~i 603 (688)
.++..+.+|+.+||..||.+||++.+.+
T Consensus 372 ~~s~~~~dli~~~L~~dP~~R~ta~ell 399 (423)
T 4fie_A 372 KVSPSLKGFLDRLLVRDPAQRATAAELL 399 (423)
T ss_dssp SSCHHHHHHHHHHSCSSTTTSCCHHHHT
T ss_pred CCCHHHHHHHHHHCCCCHHHCCCHHHHH
T ss_conf 2999999999998678956890999996
No 7
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=394.57 Aligned_cols=242 Identities=21% Similarity=0.309 Sum_probs=204.5
Q ss_pred CCCCCCEEEECCCCEEEEEEEEC--CEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCC--CCCEEEEECC
Q ss_conf 69532303401386589999998--9099999972389334699999999997079994124705447--8742377607
Q 005617 342 CNFSESFKVGQGGFGCVYKGEML--GRTVAIKMLYSHNMQGQLEFQQEVRVLSKLQHPHLVTLLGACP--EAWSLVYEYL 417 (688)
Q Consensus 342 ~~f~~~~~LG~G~fG~Vykg~~~--g~~VAIK~l~~~~~~~~~~f~~E~~iL~~l~HpnIV~l~g~~~--~~~~LV~E~~ 417 (688)
..|....+||+|+||.||+|.+. |..||||++..........+.+|+.+|+.++|||||++++++. +..+||||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 75387079602728299999998999899999985276568999999999998679989991999999899999999698
Q ss_pred CCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 89967888612499998999999999999999999985069981571899999622079997699105731001578876
Q 005617 418 PNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLY 497 (688)
Q Consensus 418 ~~gsL~~~L~~~~~~~~l~~~~~~~ia~qia~aL~yLH~~~~~~IiHrDIKp~NILLd~~~~vKL~DFGla~~~~~~~~~ 497 (688)
+||+|.+++.. ..+++..+..|+.||+.||.|||+.+ ||||||||+||||+.++.+||+|||+|+.+.....
T Consensus 154 ~gg~L~~~l~~----~~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~- 225 (346)
T 4fih_A 154 EGGALTDIVTH----TRMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP- 225 (346)
T ss_dssp TTEEHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSSSC-
T ss_pred CCCCHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEECCCCCEECCCCCC-
T ss_conf 99808999871----89899999999999999999999888---35562788997887999889902757536678877-
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHH--HHHHHCCCCCCCCCCCCCCCCH
Q ss_conf 77765568998898888812010499998202767999999998099999981568--9885219632235788899997
Q 005617 498 LPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEV--RRAVSCGKLSSILDPLAGDWPT 575 (688)
Q Consensus 498 ~~~~~~~~~~~Gt~~Y~APE~~~~~~~s~ksDVwSlGviL~ELltG~~Pf~~~~~i--~~~i~~~~l~~~ld~~~~~~~~ 575 (688)
.....+||+.|||||++.+..|+.++|||||||++|||++|++||...... ...+..+.. +. ...+.
T Consensus 226 -----~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~-----~~-~~~~~ 294 (346)
T 4fih_A 226 -----RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLP-----PR-LKNLH 294 (346)
T ss_dssp -----CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSC-----CC-CSCGG
T ss_pred -----CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCC-----CC-CCCCC
T ss_conf -----53465627582799997799999689999999999999978799898599999999971799-----98-87502
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 999999999998212699999999368
Q 005617 576 FVARRLVDLGLQCCELYGRERPDITPS 602 (688)
Q Consensus 576 ~~~~~l~~Li~~Cl~~dP~~RPs~~~~ 602 (688)
.++..+.+|+.+||..||.+|||+.+.
T Consensus 295 ~~s~~~~dli~~~L~~dP~~R~ta~e~ 321 (346)
T 4fih_A 295 KVSPSLKGFLDRLLVRDPAQRATAAEL 321 (346)
T ss_dssp GSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred CCCHHHHHHHHHHCCCCHHHCCCHHHH
T ss_conf 299999999999867995689099999
No 8
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=392.78 Aligned_cols=264 Identities=28% Similarity=0.448 Sum_probs=213.7
Q ss_pred CCHHHHHHHHCCCCCCEEEECCCCEEEEEEEECC-------EEEEEEEEECCCCC-CHHHHHHHHHHHHCCCC-CCEEEE
Q ss_conf 4988899872695323034013865899999989-------09999997238933-46999999999970799-941247
Q 005617 332 FSLADLQTATCNFSESFKVGQGGFGCVYKGEMLG-------RTVAIKMLYSHNMQ-GQLEFQQEVRVLSKLQH-PHLVTL 402 (688)
Q Consensus 332 ~~~~el~~at~~f~~~~~LG~G~fG~Vykg~~~g-------~~VAIK~l~~~~~~-~~~~f~~E~~iL~~l~H-pnIV~l 402 (688)
+..++.+...++|...+.||+|+||.||+|.+.+ ..||||++...... ....|.+|+.+|.+++| ||||++
T Consensus 54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l 133 (353)
T 4ase_A 54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 133 (353)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCCCCCEECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 88855170579959820982178959999998688854477599999976235868999999999999975799848778
Q ss_pred ECCCCC---CCEEEEECCCCCCHHHHHCCCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECC
Q ss_conf 054478---74237760789967888612499-------------99899999999999999999998506998157189
Q 005617 403 LGACPE---AWSLVYEYLPNGSLQDRLFRKSN-------------VSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGD 466 (688)
Q Consensus 403 ~g~~~~---~~~LV~E~~~~gsL~~~L~~~~~-------------~~~l~~~~~~~ia~qia~aL~yLH~~~~~~IiHrD 466 (688)
+|+|.+ ..++|||||++|+|.++|..... ...++|..++.|+.|||.||.|||+.+ |||||
T Consensus 134 ~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~---iiHRD 210 (353)
T 4ase_A 134 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRD 210 (353)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTT---CCCSC
T ss_pred EEEEEECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC---EECCC
T ss_conf 899994697799999838989799999743566654333410110356899999999999999987676278---43574
Q ss_pred CCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHH-CCC
Q ss_conf 9999622079997699105731001578876777655689988988888120104999982027679999999980-999
Q 005617 467 LKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLT-GRL 545 (688)
Q Consensus 467 IKp~NILLd~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~~~~~~~s~ksDVwSlGviL~ELlt-G~~ 545 (688)
|||+|||++.++.+||+|||+|+.+..+... .......||+.|||||++.+..|+.++|||||||+||||+| |+.
T Consensus 211 LK~~NILl~~~~~vKi~DFGlar~~~~~~~~----~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~ 286 (353)
T 4ase_A 211 LAARNILLSEKNVVKICDFGLARDIYKDPDY----VRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGAS 286 (353)
T ss_dssp CSGGGEEECGGGCEEECCCGGGSCTTTCTTS----EEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCEEECCCCCEEECCCHHHHHCCCCCCC----EEECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCC
T ss_conf 6721130579997897965432224568872----032540146665698999469999755374068999999818999
Q ss_pred CCCCHH---HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 999815---689885219632235788899997999999999998212699999999368999999853
Q 005617 546 PVGLAG---EVRRAVSCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLH 611 (688)
Q Consensus 546 Pf~~~~---~i~~~i~~~~l~~~ld~~~~~~~~~~~~~l~~Li~~Cl~~dP~~RPs~~~~i~~~L~~l~ 611 (688)
||.... .+...+..+.. ...|..++..+.+|+.+||+.||.+|||+. ++++.|+.+.
T Consensus 287 Pf~~~~~~~~~~~~i~~g~~--------~~~p~~~~~~~~~li~~c~~~dP~~RPt~~-eil~~L~~ll 346 (353)
T 4ase_A 287 PYPGVKIDEEFCRRLKEGTR--------MRAPDYTTPEMYQTMLDCWHGEPSQRPTFS-ELVEHLGNLL 346 (353)
T ss_dssp SSTTCCCSHHHHHHHHHTCC--------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHH-HHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHCCCC--------CCCCCCCCHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHHH
T ss_conf 99998989999999973898--------888865789999999997686966793999-9999999999
No 9
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=387.46 Aligned_cols=251 Identities=23% Similarity=0.247 Sum_probs=203.3
Q ss_pred HCCCCCCEEEECCCCEEEEEEEEC--CEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCC--CCEEEEEC
Q ss_conf 269532303401386589999998--90999999723893346999999999970799941247054478--74237760
Q 005617 341 TCNFSESFKVGQGGFGCVYKGEML--GRTVAIKMLYSHNMQGQLEFQQEVRVLSKLQHPHLVTLLGACPE--AWSLVYEY 416 (688)
Q Consensus 341 t~~f~~~~~LG~G~fG~Vykg~~~--g~~VAIK~l~~~~~~~~~~f~~E~~iL~~l~HpnIV~l~g~~~~--~~~LV~E~ 416 (688)
.+.|....+||+|+||.||+|++. |..||||+++.... +.+|+.++..++|||||++++++.+ ..+|||||
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy 131 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMEL 131 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred HHHEEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHHH-----HHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 3351768685138780999999889998999999788886-----99999999857998999399999989999999966
Q ss_pred CCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCC-CEEEEECCCCCCCCCCC
Q ss_conf 78996788861249999899999999999999999998506998157189999962207999-76991057310015788
Q 005617 417 LPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSEL-SSKICDFGICRLVTEDT 495 (688)
Q Consensus 417 ~~~gsL~~~L~~~~~~~~l~~~~~~~ia~qia~aL~yLH~~~~~~IiHrDIKp~NILLd~~~-~vKL~DFGla~~~~~~~ 495 (688)
|+||+|.++|.... .+++..+..|+.||+.||.|||+.+ ||||||||+||||+.+| .+||+|||+|+.+....
T Consensus 132 ~~gg~L~~~l~~~~---~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~ 205 (336)
T 4g3f_A 132 LEGGSLGQLIKQMG---CLPEDRALYYLGQALEGLEYLHTRR---ILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDG 205 (336)
T ss_dssp CTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCCGGGEEECTTSCCEEECCCTTCEEC----
T ss_pred CCCCCHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHCC---CEECCCCHHHEEEECCCCEEEEEECCCCEECCCCC
T ss_conf 59986999998769---9999999999999999999999889---04261677887995899979996278776856787
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHH--HHHHHHCCCCCCCCCCCCCCC
Q ss_conf 767776556899889888881201049999820276799999999809999998156--898852196322357888999
Q 005617 496 LYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGE--VRRAVSCGKLSSILDPLAGDW 573 (688)
Q Consensus 496 ~~~~~~~~~~~~~Gt~~Y~APE~~~~~~~s~ksDVwSlGviL~ELltG~~Pf~~~~~--i~~~i~~~~l~~~ld~~~~~~ 573 (688)
... ........+||+.|||||++.+..|+.++|||||||+||||+||++||..... +...+..+.. .....
T Consensus 206 ~~~-~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~------~~~~~ 278 (336)
T 4g3f_A 206 LGK-SLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIASEPP------PIREI 278 (336)
T ss_dssp ---------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHHHSCC------GGGGS
T ss_pred CCC-CEECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCC------CCHHC
T ss_conf 654-02217854558020089998899989089999999999999978699899899999999980899------80025
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 9799999999999821269999999936899999985
Q 005617 574 PTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQL 610 (688)
Q Consensus 574 ~~~~~~~l~~Li~~Cl~~dP~~RPs~~~~i~~~L~~l 610 (688)
+..++..+.+|+.+||+.||.+|||+. ++.+.|...
T Consensus 279 ~~~~s~~~~~li~~~L~~dP~~R~sa~-el~~~l~~~ 314 (336)
T 4g3f_A 279 PPSCAPLTAQAIQEGLRKEPVHRASAM-ELRRKVGKA 314 (336)
T ss_dssp CTTSCHHHHHHHHHHTCSSGGGSCCHH-HHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHH
T ss_conf 866799999999997628976895999-999999999
No 10
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=1.00 E-value=1 Score=385.87 Aligned_cols=242 Identities=27% Similarity=0.365 Sum_probs=205.7
Q ss_pred CCCCCCEEEECCCCEEEEEEEEC--CEEEEEEEEECCCC---CCHHHHHHHHHHHHCCCCCCEEEEECCCCC--CCEEEE
Q ss_conf 69532303401386589999998--90999999723893---346999999999970799941247054478--742377
Q 005617 342 CNFSESFKVGQGGFGCVYKGEML--GRTVAIKMLYSHNM---QGQLEFQQEVRVLSKLQHPHLVTLLGACPE--AWSLVY 414 (688)
Q Consensus 342 ~~f~~~~~LG~G~fG~Vykg~~~--g~~VAIK~l~~~~~---~~~~~f~~E~~iL~~l~HpnIV~l~g~~~~--~~~LV~ 414 (688)
++|...+.||+|+||+||+++.. |..||||++.+... .....+.+|+.++++++|||||++++++.+ ..++||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CCCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEE
T ss_conf 23689889831648499999999999899999988888779789999999999998679989891999997389899999
Q ss_pred ECCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCC
Q ss_conf 60789967888612499998999999999999999999985069981571899999622079997699105731001578
Q 005617 415 EYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTED 494 (688)
Q Consensus 415 E~~~~gsL~~~L~~~~~~~~l~~~~~~~ia~qia~aL~yLH~~~~~~IiHrDIKp~NILLd~~~~vKL~DFGla~~~~~~ 494 (688)
||++||+|.+++.... .+++..+..|+.||+.||.|||+.+ |+||||||+||||+.++.+||+|||+|+.+...
T Consensus 112 Ey~~gG~L~~~i~~~~---~l~e~~~~~~~~qi~~al~ylH~~~---IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~ 185 (311)
T 4aw0_A 112 SYAKNGELLKYIRKIG---SFDETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPE 185 (311)
T ss_dssp CCCTTEEHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred ECCCCCCHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEEECCCCEECCCC
T ss_conf 6489989999998749---9999999999999999999999887---826878789969858988899876875025778
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHH--HHHHHHCCCCCCCCCCCCCC
Q ss_conf 8767776556899889888881201049999820276799999999809999998156--89885219632235788899
Q 005617 495 TLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGE--VRRAVSCGKLSSILDPLAGD 572 (688)
Q Consensus 495 ~~~~~~~~~~~~~~Gt~~Y~APE~~~~~~~s~ksDVwSlGviL~ELltG~~Pf~~~~~--i~~~i~~~~l~~~ld~~~~~ 572 (688)
... ......+||+.|||||++.+..|+.++||||+||+||||+||++||..... +...+..+.+ .
T Consensus 186 ~~~----~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~---------~ 252 (311)
T 4aw0_A 186 SKQ----ARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGLIFAKIIKLEY---------D 252 (311)
T ss_dssp TTC----CCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCC---------C
T ss_pred CCC----CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCC---------C
T ss_conf 776----543675568030799897689999689899899999999749899899799999999971999---------9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 997999999999998212699999999368
Q 005617 573 WPTFVARRLVDLGLQCCELYGRERPDITPS 602 (688)
Q Consensus 573 ~~~~~~~~l~~Li~~Cl~~dP~~RPs~~~~ 602 (688)
+|..++..+.+|+.+||+.||.+||++.+.
T Consensus 253 ~p~~~s~~~~dli~~lL~~dp~~R~t~~e~ 282 (311)
T 4aw0_A 253 FPEKFFPKARDLVEKLLVLDATKRLGCEEM 282 (311)
T ss_dssp CCTTCCHHHHHHHHHHSCSSGGGSTTSGGG
T ss_pred CCCCCCHHHHHHHHHHCCCCHHHCCCHHHH
T ss_conf 996569999999999762897578096797
Done!