Your job contains 1 sequence.
>005618
MALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCR
VINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEPPPPPPPRFHVHSFCKTLTASDTST
HGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSV
FVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVS
TGTMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGI
EDADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEPALAPPALNSLPMPRPKRPRSN
MLPSSPDSSVLTREGSSKLNVDPSSATGFSRVLQGQEFSTLRGNFAERESNESDTAEKSV
VWPPSLDDEKIDVVSASRRYGSENWVPPGRHEPVYTDLLSGFGANADPSHGFSSPFADAV
PVRKSVLDQEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNVRYGGFGD
YPMLNGNRVEHSHGNWLMPPLPPSNFENSAHSRELMPKSAMVQDQEAGKSKDCKLFGIPL
FSNHVMPEPVVSHRNTMNEPAGNLDQQFRAFESDQKSDHSKSSKLADDNQVFNEHEKPSQ
PSQTHTKDVRSKTQCGSTRSCTKVPLPH
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 005618
(688 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2174013 - symbol:ARF2 "auxin response factor 2... 2301 1.1e-238 1
TAIR|locus:2025991 - symbol:ARF1 "auxin response factor 1... 1327 4.0e-138 2
TAIR|locus:2138096 - symbol:ARF9 "auxin response factor 9... 1201 1.3e-126 2
TAIR|locus:2076765 - symbol:ARF18 "auxin response factor ... 1163 7.5e-120 2
TAIR|locus:2039124 - symbol:ARF11 "auxin response factor ... 1152 5.2e-119 2
TAIR|locus:2175098 - symbol:ARF4 "auxin response factor 4... 1031 6.4e-110 3
TAIR|locus:2014731 - symbol:ARF14 "auxin response factor ... 993 1.7e-105 3
TAIR|locus:2057609 - symbol:ETT "ETTIN" species:3702 "Ara... 939 3.4e-101 3
TAIR|locus:2036288 - symbol:ARF22 "auxin response factor ... 971 4.6e-101 2
TAIR|locus:2204237 - symbol:ARF6 "auxin response factor 6... 999 1.0e-100 1
TAIR|locus:2026145 - symbol:ARF12 "auxin response factor ... 965 2.0e-100 2
TAIR|locus:2009298 - symbol:ARF21 "auxin response factor ... 957 1.8e-99 2
TAIR|locus:2206717 - symbol:ARF20 "auxin response factor ... 936 4.2e-98 2
TAIR|locus:2202205 - symbol:ARF19 "auxin response factor ... 971 9.4e-98 1
TAIR|locus:2152642 - symbol:ARF8 "auxin response factor 8... 967 2.5e-97 1
TAIR|locus:2035454 - symbol:MP "MONOPTEROS" species:3702 ... 959 1.8e-96 1
TAIR|locus:2008991 - symbol:ARF13 "AUXIN RESPONSE FACTOR ... 694 2.9e-88 3
TAIR|locus:2126460 - symbol:ARF16 "auxin response factor ... 483 7.4e-69 3
TAIR|locus:2057517 - symbol:ARF10 "auxin response factor ... 492 3.7e-68 2
TAIR|locus:2037169 - symbol:ARF23 "auxin response factor ... 561 2.6e-54 1
TAIR|locus:2029436 - symbol:ARF17 "auxin response factor ... 406 1.5e-46 2
TAIR|locus:2041404 - symbol:NGA1 "NGATHA1" species:3702 "... 145 4.9e-07 1
TAIR|locus:2200950 - symbol:NGA3 "NGATHA3" species:3702 "... 143 1.2e-06 1
TAIR|locus:2079537 - symbol:NGA2 "NGATHA2" species:3702 "... 138 2.7e-06 1
TAIR|locus:2117007 - symbol:NGA4 "NGATHA4" species:3702 "... 138 6.0e-06 2
TAIR|locus:2164215 - symbol:DPA4 "DEVELOPMENT-RELATED PcG... 134 6.6e-06 1
TAIR|locus:2039165 - symbol:ABS2 "ABNORMAL SHOOT 2" speci... 126 3.7e-05 2
TAIR|locus:2205319 - symbol:RAV1 "related to ABI3/VP1 1" ... 126 8.2e-05 1
TAIR|locus:2085969 - symbol:EDF3 "ethylene response DNA b... 124 0.00013 1
TAIR|locus:2031185 - symbol:TEM1 "TEMPRANILLO 1" species:... 120 0.00041 1
TAIR|locus:2080782 - symbol:AT3G11580 species:3702 "Arabi... 114 0.00058 2
>TAIR|locus:2174013 [details] [associations]
symbol:ARF2 "auxin response factor 2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009725 "response
to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IMP;TAS] [GO:0009911 "positive regulation of flower
development" evidence=IMP] [GO:0010047 "fruit dehiscence"
evidence=IMP] [GO:0010150 "leaf senescence" evidence=IMP]
[GO:0010227 "floral organ abscission" evidence=IMP] [GO:0008285
"negative regulation of cell proliferation" evidence=IMP]
[GO:0048481 "ovule development" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0009737 "response to abscisic acid
stimulus" evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0042744 "hydrogen peroxide catabolic process"
evidence=RCA] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0009737 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0045892 GO:GO:0008285 GO:GO:0009734 GO:GO:0043565
GO:GO:0003700 GO:GO:0006351 GO:GO:0010150 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0009911 GO:GO:0010047
GO:GO:0010227 GO:GO:0048481 EMBL:AY669787 EMBL:AB016880
EMBL:AF336918 EMBL:AF378862 EMBL:BT000784 EMBL:BT001072
EMBL:AK221252 EMBL:AK221254 EMBL:AK221274 EMBL:AK221277
EMBL:AK221282 EMBL:AK221305 EMBL:U89771 EMBL:AJ441313 EMBL:AJ458328
IPI:IPI00518739 RefSeq:NP_201006.2 RefSeq:NP_851244.1
RefSeq:NP_974980.1 UniGene:At.21704 ProteinModelPortal:Q94JM3
SMR:Q94JM3 DIP:DIP-46014N IntAct:Q94JM3 STRING:Q94JM3 PaxDb:Q94JM3
PRIDE:Q94JM3 EnsemblPlants:AT5G62000.1 EnsemblPlants:AT5G62000.2
EnsemblPlants:AT5G62000.3 GeneID:836321 KEGG:ath:AT5G62000
GeneFarm:3364 TAIR:At5g62000 eggNOG:NOG255064 InParanoid:Q94JM3
OMA:HTESVEC PhylomeDB:Q94JM3 ProtClustDB:CLSN2680590
Genevestigator:Q94JM3 GermOnline:AT5G62000 Uniprot:Q94JM3
Length = 859
Score = 2301 (815.1 bits), Expect = 1.1e-238, P = 1.1e-238
Identities = 458/696 (65%), Positives = 526/696 (75%)
Query: 2 ALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRV 61
ALY ELWHACAGPLVTVPR+ +RV+YFPQGHIEQVEASTNQ A+QQMP+YDLPSK+LCRV
Sbjct: 57 ALYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPSKLLCRV 116
Query: 62 INVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTH 121
INV LKAE DTDEV+AQ+TLLPE+NQDENA+EKE RF VHSFCKTLTASDTSTH
Sbjct: 117 INVDLKAEADTDEVYAQITLLPEANQDENAIEKEAPLPPPPRFQVHSFCKTLTASDTSTH 176
Query: 122 GGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVF 181
GGFSVLRRHADECLPPLDMSRQPPTQEL AKDLH NEWRFRHIFRGQPRRHLLQSGWSVF
Sbjct: 177 GGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVF 236
Query: 182 VSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVST 241
VSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHA+ST
Sbjct: 237 VSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAIST 296
Query: 242 GTMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIE 301
GTMFTVYYKPRTSPSEFIVP+DQYMES+KNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIE
Sbjct: 297 GTMFTVYYKPRTSPSEFIVPFDQYMESVKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIE 356
Query: 302 DADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEXXXXXXXXXXXXXXRPKRPRSNM 361
++DP RW SKWR LKVRWDETS+IPRP+RVS WK+E RPKRPRSN+
Sbjct: 357 ESDPTRWPKSKWRSLKVRWDETSSIPRPDRVSPWKVEPALAPPALSPVPMPRPKRPRSNI 416
Query: 362 LPSSPDSSVLTREGSSKLNVDPSSATGFSRVLQGQEFSTLRGNFAERESNESDTAEKSVV 421
PSSPDSS+LTREG++K N+DP A+G SRVLQGQE+STLR E S E D E SVV
Sbjct: 417 APSSPDSSMLTREGTTKANMDPLPASGLSRVLQGQEYSTLRTKHTE--SVECDAPENSVV 474
Query: 422 WPPSLDDEKIDVVSASRRYGSENWVPPGRHEPVYTDLLSGFGANADPSHGFSSPFAD--- 478
W S DD+K+DVVS SRRYGSENW+ RHEP YTDLLSGFG N DPSHG PF D
Sbjct: 475 WQSSADDDKVDVVSGSRRYGSENWMSSARHEPTYTDLLSGFGTNIDPSHGQRIPFYDHSS 534
Query: 479 --AVPVRKSVLDQEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNVRYG 536
++P ++ + D EGKF+ +A W ++ SG SLK+ ES KVP D + Q R NV+Y
Sbjct: 535 SPSMPAKRILSDSEGKFDYLANQWQMIHSGLSLKLHES-PKVPA-ATDASLQGRCNVKYS 592
Query: 537 GFGDYPMLNGNRVEHSHGNWLMPPLPPSNFEN------SAHSRELMPKSAMVQDQEAGKS 590
+YP+LNG E++ GNW + P + +E A +RE + K +E KS
Sbjct: 593 ---EYPVLNGLSTENAGGNWPIRPRALNYYEEVVNAQAQAQAREQVTKQPFTIQEETAKS 649
Query: 591 KD--CKLFGIPLFSNHVMPEPVVSHRNTMNEPAGNLDQQFRAFEXXXXXXXXXXXXLADD 648
++ C+LFGIPL +N + +S RN +N+ AG Q + + +D
Sbjct: 650 REGNCRLFGIPLTNNMNGTDSTMSQRNNLNDAAGLT--QIASPKVQDLSDQSKGSKSTND 707
Query: 649 NQVFNEHEKPSQPSQTHTKDVRSKTQCGSTRSCTKV 684
++ E +P Q + H KD ++KT S+RSCTKV
Sbjct: 708 HR---EQGRPFQTNNPHPKDAQTKTN--SSRSCTKV 738
>TAIR|locus:2025991 [details] [associations]
symbol:ARF1 "auxin response factor 1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA;IDA;IPI] [GO:0005634 "nucleus" evidence=ISM;IEA;ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;TAS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;TAS] [GO:0010150 "leaf
senescence" evidence=IGI] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007267 "cell-cell signaling" evidence=RCA] [GO:0009616 "virus
induced gene silencing" evidence=RCA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0016246
"RNA interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0009733
"response to auxin stimulus" evidence=IEP] InterPro:IPR003311
InterPro:IPR003340 InterPro:IPR010525 InterPro:IPR011525
Pfam:PF02309 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0045892 GO:GO:0009733
GO:GO:0009734 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0010150 EMBL:AC007258 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:U83245 EMBL:AY133723 EMBL:BT002748
IPI:IPI00518211 IPI:IPI00520405 PIR:D96621 RefSeq:NP_001031208.1
RefSeq:NP_176184.1 RefSeq:NP_849830.1 UniGene:At.74832
ProteinModelPortal:Q8L7G0 SMR:Q8L7G0 IntAct:Q8L7G0 STRING:Q8L7G0
EnsemblPlants:AT1G59750.1 EnsemblPlants:AT1G59750.3 GeneID:842268
KEGG:ath:AT1G59750 GeneFarm:3363 TAIR:At1g59750 eggNOG:NOG257828
HOGENOM:HOG000241141 InParanoid:Q8L7G0 KO:K14486 OMA:QMPSFNL
PhylomeDB:Q8L7G0 ProtClustDB:CLSN2679699 Genevestigator:Q8L7G0
GermOnline:AT1G59750 Uniprot:Q8L7G0
Length = 665
Score = 1327 (472.2 bits), Expect = 4.0e-138, Sum P(2) = 4.0e-138
Identities = 269/447 (60%), Positives = 321/447 (71%)
Query: 2 ALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRV 61
AL ELWHACAGPLVT+PREGERVYYFP+GH+EQ+EAS +Q +QQMP ++LPSKILC+V
Sbjct: 18 ALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSFNLPSKILCKV 77
Query: 62 INVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTH 121
IN+Q +AEP+TDEV+AQ+TLLPE +Q E + + VHSFCKTLTASDTSTH
Sbjct: 78 INIQRRAEPETDEVYAQITLLPELDQSE-PTSPDAPVQEPEKCTVHSFCKTLTASDTSTH 136
Query: 122 GGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVF 181
GGFSVLRRHAD+CLPPLDMS+QPP QEL A DLH +EW FRHIFRGQPRRHLL +GWSVF
Sbjct: 137 GGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHNSEWHFRHIFRGQPRRHLLTTGWSVF 196
Query: 182 VSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVST 241
VSSK+LVAGDAFIFLRGEN ELRVGVRR MRQQ N+PSSVISSHSMH+GVLATA HA++T
Sbjct: 197 VSSKKLVAGDAFIFLRGENEELRVGVRRHMRQQTNIPSSVISSHSMHIGVLATAAHAITT 256
Query: 242 GTMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIE 301
GT+F+V+YKPRTS SEFIV ++Y+E+ S+GMRFKMRFEGEEAPE+RF+GTIVG++
Sbjct: 257 GTIFSVFYKPRTSRSEFIVSVNRYLEAKTQKLSVGMRFKMRFEGEEAPEKRFSGTIVGVQ 316
Query: 302 DADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEXXXXXXXXXXXXX--XRPKRPRS 359
+ W DS+WR LKV+WDE S++ RPERVS W++E R KRPR
Sbjct: 317 ENKSSVWHDSEWRSLKVQWDEPSSVFRPERVSPWELEPLVANSTPSSQPQPPQRNKRPRP 376
Query: 360 NMLPS--SPDSSVLTREGSSKLNVD-PSSATGFSRVLQGQEFSTLRGNFAERESNESDTA 416
LPS + S +T +G K D PSS FS + F GN +
Sbjct: 377 PGLPSPATGPSGPVTPDGVWKSPADTPSSVPLFSPPAKAATFGH-GGN------KSFGVS 429
Query: 417 EKSVVWPPSLDDEKIDVVSASRRYGSE 443
S WP + D SA +E
Sbjct: 430 IGSAFWPTNADSAAESFASAFNNESTE 456
Score = 46 (21.3 bits), Expect = 4.0e-138, Sum P(2) = 4.0e-138
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 653 NEHEKPSQPSQTHTKDVRS--KTQCGSTRSCTKV 684
N+ + PS +RS ++Q RSCTKV
Sbjct: 514 NQSDIPSGSGDPEKSSLRSPQESQSRQIRSCTKV 547
>TAIR|locus:2138096 [details] [associations]
symbol:ARF9 "auxin response factor 9" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;TAS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 HOGENOM:HOG000241141
EMBL:AF082176 EMBL:AC002343 EMBL:AL078468 EMBL:AL161560
EMBL:AF344312 EMBL:AK221865 EMBL:AK228263 IPI:IPI00519218
IPI:IPI00657180 PIR:T08917 RefSeq:NP_001031706.1 RefSeq:NP_194129.1
UniGene:At.3396 ProteinModelPortal:Q9XED8 SMR:Q9XED8 IntAct:Q9XED8
PaxDb:Q9XED8 PRIDE:Q9XED8 EnsemblPlants:AT4G23980.1 GeneID:828498
KEGG:ath:AT4G23980 GeneFarm:3373 TAIR:At4g23980 eggNOG:NOG300390
InParanoid:Q9XED8 OMA:YAQITLI PhylomeDB:Q9XED8
ProtClustDB:CLSN2685375 Genevestigator:Q9XED8 Uniprot:Q9XED8
Length = 638
Score = 1201 (427.8 bits), Expect = 1.3e-126, Sum P(2) = 1.3e-126
Identities = 236/418 (56%), Positives = 300/418 (71%)
Query: 3 LYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQM-PVYDLPSKILCRV 61
LY ELW CAGPLV VP+ ERVYYFPQGH+EQ+EAST QV M P++ LP KILC V
Sbjct: 9 LYDELWKLCAGPLVDVPQAQERVYYFPQGHMEQLEASTQQVDLNTMKPLFVLPPKILCNV 68
Query: 62 INVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTH 121
+NV L+AE DTDEV+AQ+TL+P + + + + R VHSF K LTASDTSTH
Sbjct: 69 MNVSLQAEKDTDEVYAQITLIPVGTEVDEPMSPDPSPPELQRPKVHSFSKVLTASDTSTH 128
Query: 122 GGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVF 181
GGFSVLR+HA ECLPPLDM++Q PTQEL A+D+HG +W+F+HIFRGQPRRHLL +GWS F
Sbjct: 129 GGFSVLRKHATECLPPLDMTQQTPTQELVAEDVHGYQWKFKHIFRGQPRRHLLTTGWSTF 188
Query: 182 VSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVST 241
V+SKRLVAGD F+FLRGENGELRVGVRRA QQ ++PSSVISSHSMHLGVLATA HA T
Sbjct: 189 VTSKRLVAGDTFVFLRGENGELRVGVRRANLQQSSMPSSVISSHSMHLGVLATARHATQT 248
Query: 242 GTMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIE 301
TMF VYYKPRTS +FI+ ++Y+E++ N +S+GMRFKMRFEGE++PE+R++GT++G++
Sbjct: 249 KTMFIVYYKPRTS--QFIISLNKYLEAMSNKFSVGMRFKMRFEGEDSPERRYSGTVIGVK 306
Query: 302 DADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEXXXXXXXXXXXXXXRPKRPRSNM 361
D P W+DSKWRCL+V WDE ++I RP +VS W+IE + KRPR
Sbjct: 307 DCSPH-WKDSKWRCLEVHWDEPASISRPNKVSPWEIEPFVNSENVPKSVMLKNKRPRQVS 365
Query: 362 LPSSPDSSVLTREGSSKLNVDPSSATGFSRVLQGQEFSTLRGNFAERESNESDTAEKS 419
S+ D + S + P F++ ++S+ + R++NE A+KS
Sbjct: 366 EVSALDVGITASNLWSSVLTQPHE---FAQSCITSQWSSPQQ--CHRDANED--AKKS 416
Score = 63 (27.2 bits), Expect = 1.3e-126, Sum P(2) = 1.3e-126
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 656 EKPSQPSQTHTKDVRSKTQCGSTRSCTKVPL 686
EK +P++ K+V+SK Q STRS TKV +
Sbjct: 501 EKKQEPAEGSPKEVQSK-QSSSTRSRTKVQM 530
>TAIR|locus:2076765 [details] [associations]
symbol:ARF18 "auxin response factor 18" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009725 "response
to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AL132959 HOGENOM:HOG000241141 EMBL:AF334717
EMBL:AY059746 EMBL:AY070463 EMBL:AY091392 EMBL:AK229945
IPI:IPI00524053 PIR:T47975 RefSeq:NP_567119.1 UniGene:At.17167
UniGene:At.69165 ProteinModelPortal:Q9C5W9 SMR:Q9C5W9 IntAct:Q9C5W9
EnsemblPlants:AT3G61830.1 GeneID:825356 KEGG:ath:AT3G61830
GeneFarm:3414 TAIR:At3g61830 eggNOG:NOG268528 InParanoid:Q9C5W9
OMA:RISQFIV PhylomeDB:Q9C5W9 ProtClustDB:CLSN2917487
Genevestigator:Q9C5W9 GermOnline:AT3G61830 Uniprot:Q9C5W9
Length = 602
Score = 1163 (414.5 bits), Expect = 7.5e-120, Sum P(2) = 7.5e-120
Identities = 237/419 (56%), Positives = 295/419 (70%)
Query: 3 LYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQ-VADQQMPVYDLPSKILCRV 61
LYTELW CAGPLV VPR ERV+YFPQGH+EQ+ ASTNQ + +++PV+DLP KILCRV
Sbjct: 22 LYTELWKVCAGPLVEVPRAQERVFYFPQGHMEQLVASTNQGINSEEIPVFDLPPKILCRV 81
Query: 62 INVQLKAEPDTDEVFAQVTLLPESNQDE-NAVEKEXXXXXXXRFHVHSFCKTLTASDTST 120
++V LKAE +TDEV+AQ+TL PE +Q E +++ FH SF K LTASDTST
Sbjct: 82 LDVTLKAEHETDEVYAQITLQPEEDQSEPTSLDPPIVGPTKQEFH--SFVKILTASDTST 139
Query: 121 HGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSV 180
HGGFSVLR+HA ECLP LDM++ PTQEL +DLHG EWRF+HIFRGQPRRHLL +GWS
Sbjct: 140 HGGFSVLRKHATECLPSLDMTQATPTQELVTRDLHGFEWRFKHIFRGQPRRHLLTTGWST 199
Query: 181 FVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVS 240
FVSSKRLVAGDAF+FLRGENG+LRVGVRR R Q +P+SVISS SMHLGVLATA HAV
Sbjct: 200 FVSSKRLVAGDAFVFLRGENGDLRVGVRRLARHQSTMPTSVISSQSMHLGVLATASHAVR 259
Query: 241 TGTMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGI 300
T T+F V+YKPR S +FIV ++YME+IK+ +S+G RF+MRFEGEE+PE+ FTGTIVG
Sbjct: 260 TTTIFVVFYKPRIS--QFIVGVNKYMEAIKHGFSLGTRFRMRFEGEESPERIFTGTIVGS 317
Query: 301 EDADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEXXXXXXXXXXXXXXRPKRPRSN 360
D Q W SKWR L+V+WDE +T+ RP++VS W+IE ++P+S
Sbjct: 318 GDLSSQ-WPASKWRSLQVQWDEPTTVQRPDKVSPWEIEPFLATSPISTPA----QQPQSK 372
Query: 361 MLPSSP-DSSVLTREGSSKLNVDPSSATGFS---RVLQGQEFSTLRGNFAERESNESDT 415
S P + SV T S L P S + ++ Q + G ++ S + +T
Sbjct: 373 CKRSRPIEPSVKTPAPPSFLYSLPQSQDSINASLKLFQDPSLERISGGYSSNNSFKPET 431
Score = 37 (18.1 bits), Expect = 7.5e-120, Sum P(2) = 7.5e-120
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 594 KLFGIPLFSNHVMPEPVVSHRNTMN 618
+LFG L SN P P+ + M+
Sbjct: 441 RLFGFDLTSNS--PAPIPQDKQPMD 463
>TAIR|locus:2039124 [details] [associations]
symbol:ARF11 "auxin response factor 11" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 GO:GO:0009506
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 EMBL:AC006526 EMBL:AC006418
HOGENOM:HOG000241141 EMBL:AY669791 EMBL:AK229757 EMBL:BX837073
EMBL:AK229924 IPI:IPI00544804 IPI:IPI00547357 IPI:IPI00656718
PIR:A84904 RefSeq:NP_001031548.1 RefSeq:NP_182176.2
RefSeq:NP_973701.1 UniGene:At.36497 ProteinModelPortal:Q9ZPY6
SMR:Q9ZPY6 PRIDE:Q9ZPY6 EnsemblPlants:AT2G46530.3 GeneID:819264
KEGG:ath:AT2G46530 GeneFarm:3388 TAIR:At2g46530 eggNOG:NOG303653
InParanoid:Q9ZPY6 OMA:MFEIEGE PhylomeDB:Q9ZPY6
ProtClustDB:CLSN2681223 ArrayExpress:Q9ZPY6 Genevestigator:Q9ZPY6
Uniprot:Q9ZPY6
Length = 622
Score = 1152 (410.6 bits), Expect = 5.2e-119, Sum P(2) = 5.2e-119
Identities = 229/386 (59%), Positives = 283/386 (73%)
Query: 3 LYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQ-VADQQMPVYDLPSKILCRV 61
LYTELW ACAGPLV VPR GERV+YFPQGH+EQ+ ASTNQ V DQ++PV++LP KILCRV
Sbjct: 39 LYTELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVFNLPPKILCRV 98
Query: 62 INVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTH 121
++V LKAE +TDEV+AQ+TL PE +Q E + + V SF K LTASDTSTH
Sbjct: 99 LSVTLKAEHETDEVYAQITLQPEEDQSE-PTSLDPPLVEPAKPTVDSFVKILTASDTSTH 157
Query: 122 GGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVF 181
GGFSVLR+HA ECLP LDM++ PTQEL A+DLHG EWRF+HIFRGQPRRHLL +GWS F
Sbjct: 158 GGFSVLRKHATECLPSLDMTQPTPTQELVARDLHGYEWRFKHIFRGQPRRHLLTTGWSTF 217
Query: 182 VSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVST 241
V+SKRLVAGDAF+FLRGE G+LRVGVRR +QQ +P+SVISS SM LGVLATA HAV+T
Sbjct: 218 VTSKRLVAGDAFVFLRGETGDLRVGVRRLAKQQSTMPASVISSQSMRLGVLATASHAVTT 277
Query: 242 GTMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIE 301
T+F V+YKPR S +FI+ ++YM ++KN +S+GMR++MRFEGEE+PE+ FTGTI+G
Sbjct: 278 TTIFVVFYKPRIS--QFIISVNKYMMAMKNGFSLGMRYRMRFEGEESPERIFTGTIIGSG 335
Query: 302 DADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEXXXXXXXXXXXXXXRPKRPRS-- 359
D Q W SKWR L+++WDE S+I RP +VS W+IE + K RS
Sbjct: 336 DLSSQ-WPASKWRSLQIQWDEPSSIQRPNKVSPWEIEPFSPSALTPTPTQQQSKSKRSRP 394
Query: 360 -NMLPSSPDSSVLTREGSSKLNVDPS 384
+ + SP +S S +PS
Sbjct: 395 ISEITGSPVASSFLSSFSQSHESNPS 420
Score = 40 (19.1 bits), Expect = 5.2e-119, Sum P(2) = 5.2e-119
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 563 PSNFENSAHSRELMPKSAMVQDQEAGKSKDCKLFGIPLFS 602
P+ NS ++ + + EA + C+LFG L S
Sbjct: 428 PATERNS--NKSVFSSGLQCKITEAPVTSSCRLFGFDLTS 465
>TAIR|locus:2175098 [details] [associations]
symbol:ARF4 "auxin response factor 4" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0010158 "abaxial
cell fate specification" evidence=IGI] [GO:0010050 "vegetative
phase change" evidence=IGI] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 EMBL:AB011483 GO:GO:0010050
HOGENOM:HOG000241141 GO:GO:0010158 EMBL:AF013466 EMBL:AF344313
EMBL:AY080832 EMBL:AY113977 IPI:IPI00525857 RefSeq:NP_200853.1
UniGene:At.6797 ProteinModelPortal:Q9ZTX9 SMR:Q9ZTX9 IntAct:Q9ZTX9
STRING:Q9ZTX9 PaxDb:Q9ZTX9 PRIDE:Q9ZTX9 EnsemblPlants:AT5G60450.1
GeneID:836166 KEGG:ath:AT5G60450 GeneFarm:3367 TAIR:At5g60450
eggNOG:NOG277773 InParanoid:Q9ZTX9 OMA:RILYTDS PhylomeDB:Q9ZTX9
ProtClustDB:CLSN2686689 Genevestigator:Q9ZTX9 GermOnline:AT5G60450
Uniprot:Q9ZTX9
Length = 788
Score = 1031 (368.0 bits), Expect = 6.4e-110, Sum P(3) = 6.4e-110
Identities = 202/406 (49%), Positives = 273/406 (67%)
Query: 2 ALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRV 61
++Y+ELWHACAGPL +P++G V YFPQGH+EQ +A + + ++P +DL +I+CRV
Sbjct: 61 SIYSELWHACAGPLTCLPKKGNVVVYFPQGHLEQ-DAMVSYSSPLEIPKFDLNPQIVCRV 119
Query: 62 INVQLKAEPDTDEVFAQVTLLP---------ESNQ-DENAVEKEXXXXXXXRFHVHSFCK 111
+NVQL A DTDEV+ QVTLLP E + E E+E + H FCK
Sbjct: 120 VNVQLLANKDTDEVYTQVTLLPLQEFSMLNGEGKEVKELGGEEERNGSSSVKRTPHMFCK 179
Query: 112 TLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRR 171
TLTASDTSTHGGFSV RR A++C PLD +Q P+QEL AKDLHG EW+FRHI+RGQPRR
Sbjct: 180 TLTASDTSTHGGFSVPRRAAEDCFAPLDYKQQRPSQELIAKDLHGVEWKFRHIYRGQPRR 239
Query: 172 HLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGV 231
HLL +GWS+FVS K LV+GDA +FLR E GELR+G+RRA R + +P S+I +S +
Sbjct: 240 HLLTTGWSIFVSQKNLVSGDAVLFLRDEGGELRLGIRRAARPRNGLPDSIIEKNSCS-NI 298
Query: 232 LATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQ 291
L+ +AVST +MF V+Y PR + +EF++PY++Y+ SI++ IG RF+MRFE +++PE+
Sbjct: 299 LSLVANAVSTKSMFHVFYSPRATHAEFVIPYEKYITSIRSPVCIGTRFRMRFEMDDSPER 358
Query: 292 RFTGTIVGIEDADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEXXXXXXXXXXXXX 351
R G + G+ D DP RW +SKWRCL VRWDE+ ERVS W+I+
Sbjct: 359 RCAGVVTGVCDLDPYRWPNSKWRCLLVRWDESFVSDHQERVSPWEIDPSVSLPHLSIQSS 418
Query: 352 XRPKRPRSNMLPSSPDSSVLTREGSSKLNVDPSSATGFSRVLQGQE 397
RPKRP + +L ++P + +T+ G L+ + S S+VLQGQE
Sbjct: 419 PRPKRPWAGLLDTTPPGNPITKRGGF-LDFEESVRP--SKVLQGQE 461
Score = 48 (22.0 bits), Expect = 6.4e-110, Sum P(3) = 6.4e-110
Identities = 22/71 (30%), Positives = 31/71 (43%)
Query: 389 FSRVLQGQEFSTLRG--NFAERESNESDT-----AEKSVVWPPSLDDEKIDVVSASRRY- 440
F RVLQGQE +L+ FA + A KS +P +L + V Y
Sbjct: 523 FPRVLQGQEICSLKSFPQFAGFSPAAAPNPFAYQANKSSYYPLALHGIRSTHVPYQNPYN 582
Query: 441 -GSENWVPPGR 450
G+++ PP R
Sbjct: 583 AGNQSSGPPSR 593
Score = 41 (19.5 bits), Expect = 6.4e-110, Sum P(3) = 6.4e-110
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 671 SKTQCGSTRSCTKV 684
SK Q S R CTKV
Sbjct: 657 SKPQSSSKRICTKV 670
>TAIR|locus:2014731 [details] [associations]
symbol:ARF14 "auxin response factor 14" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 eggNOG:NOG264447
ProtClustDB:CLSN2681760 EMBL:AC007887 IPI:IPI00548517 PIR:G86476
RefSeq:NP_174786.1 UniGene:At.39556 ProteinModelPortal:Q9LQE8
SMR:Q9LQE8 IntAct:Q9LQE8 PRIDE:Q9LQE8 EnsemblPlants:AT1G35540.1
GeneID:840450 KEGG:ath:AT1G35540 GeneFarm:3394 TAIR:At1g35540
OMA:DITEDAM PhylomeDB:Q9LQE8 Genevestigator:Q9LQE8 Uniprot:Q9LQE8
Length = 605
Score = 993 (354.6 bits), Expect = 1.7e-105, Sum P(3) = 1.7e-105
Identities = 187/364 (51%), Positives = 252/364 (69%)
Query: 3 LYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVI 62
+Y +LW CAGPL +P+ GE+VYYFPQGHIE VEAST + ++ P+ D PSK+ CRVI
Sbjct: 24 MYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPICDFPSKLQCRVI 83
Query: 63 NVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHG 122
+QLK E ++DE +A++TL+P++ Q + + R V+SF K LTASDTS HG
Sbjct: 84 AIQLKVENNSDETYAEITLMPDTTQVVIPTQNQNQF----RPLVNSFTKVLTASDTSVHG 139
Query: 123 GFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFV 182
GFSV ++HA ECLPPLDMS+ PTQE+ A DLHGN+WRFRHI+RG +RHLL GW+ F
Sbjct: 140 GFSVPKKHAIECLPPLDMSQPLPTQEILAIDLHGNQWRFRHIYRGTAQRHLLTIGWNAFT 199
Query: 183 SSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTG 242
+SK+LV GD +F+RGE GELRVG+RRA QQGN+PSS++S SM G++A+A HA
Sbjct: 200 TSKKLVEGDVIVFVRGETGELRVGIRRAGHQQGNIPSSIVSIESMRHGIIASAKHAFDNQ 259
Query: 243 TMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIED 302
MF V YKPR+S +FIV YD++++ + N +++G RF MRFEG++ E+R GTI+G+ D
Sbjct: 260 CMFIVVYKPRSS--QFIVSYDKFLDVVNNKFNVGSRFTMRFEGDDFSERRSFGTIIGVSD 317
Query: 303 ADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEXXXXXXXXXXXXXXRPKRPRS-NM 361
P W+ S+WR L+V+WDE ++ PRP +VS W IE + KR R N
Sbjct: 318 FSPH-WKCSEWRSLEVQWDEFASFPRPNQVSPWDIEHLTPWSNVSRSSFLKNKRSREVNE 376
Query: 362 LPSS 365
+ SS
Sbjct: 377 IGSS 380
Score = 48 (22.0 bits), Expect = 1.7e-105, Sum P(3) = 1.7e-105
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 668 DVRSKTQCGSTRSCTKVPL 686
+++SK Q STR+CTKV +
Sbjct: 500 EIQSK-QFSSTRTCTKVQM 517
Score = 37 (18.1 bits), Expect = 1.7e-105, Sum P(3) = 1.7e-105
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 594 KLFGIPLFSNHVMPEPV 610
+LFG+ L + V+ +PV
Sbjct: 457 RLFGVSLATPSVIKDPV 473
>TAIR|locus:2057609 [details] [associations]
symbol:ETT "ETTIN" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009725 "response to hormone
stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;TAS] [GO:0009850 "auxin
metabolic process" evidence=TAS] [GO:0010158 "abaxial cell fate
specification" evidence=IGI] [GO:0010050 "vegetative phase change"
evidence=IGI;RCA;IMP] [GO:0007389 "pattern specification process"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0009887 "organ morphogenesis" evidence=RCA]
[GO:0010051 "xylem and phloem pattern formation" evidence=RCA]
[GO:0048438 "floral whorl development" evidence=RCA] [GO:0048439
"flower morphogenesis" evidence=RCA] [GO:0048519 "negative
regulation of biological process" evidence=RCA] [GO:0009733
"response to auxin stimulus" evidence=ISS] InterPro:IPR003340
InterPro:IPR010525 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
SMART:SM01019 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0009733 GO:GO:0009734 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0009850 GO:GO:0010050 HOGENOM:HOG000241141
KO:K14486 EMBL:U89296 EMBL:AF007788 EMBL:U78721 EMBL:AF336917
EMBL:AF360313 EMBL:AY056365 EMBL:AB199791 IPI:IPI00527337
PIR:E84750 PIR:T03278 RefSeq:NP_180942.1 UniGene:At.10360
ProteinModelPortal:O23661 SMR:O23661 IntAct:O23661 STRING:O23661
EnsemblPlants:AT2G33860.1 GeneID:817956 KEGG:ath:AT2G33860
GeneFarm:3366 TAIR:At2g33860 eggNOG:NOG315820 InParanoid:O23661
OMA:HESNNES PhylomeDB:O23661 ProtClustDB:CLSN2913114
Genevestigator:O23661 GermOnline:AT2G33860 GO:GO:0010158
Uniprot:O23661
Length = 608
Score = 939 (335.6 bits), Expect = 3.4e-101, Sum P(3) = 3.4e-101
Identities = 193/401 (48%), Positives = 249/401 (62%)
Query: 6 ELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQ 65
ELWHACAGPL+++P+ G V YFPQGH+EQ D +Y LP + CR+++V+
Sbjct: 54 ELWHACAGPLISLPKRGSLVLYFPQGHLEQAP-------DFSAAIYGLPPHVFCRILDVK 106
Query: 66 LKAEPDTDEVFAQVTLLPESNQDENAVEK--------EXXXXXXXRFHV-HSFCKTLTAS 116
L AE TDEV+AQV+LLPES E V + E R + H FCKTLTAS
Sbjct: 107 LHAETTTDEVYAQVSLLPESEDIERKVREGIIDVDGGEEDYEVLKRSNTPHMFCKTLTAS 166
Query: 117 DTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQS 176
DTSTHGGFSV RR A++C PPLD S+ P+QEL A+DLHG EWRFRHI+RGQPRRHLL +
Sbjct: 167 DTSTHGGFSVPRRAAEDCFPPLDYSQPRPSQELLARDLHGLEWRFRHIYRGQPRRHLLTT 226
Query: 177 GWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAW 236
GWS FV+ K+LV+GDA +FLRG++G+LR+GVRRA + +G S + +M+ +
Sbjct: 227 GWSAFVNKKKLVSGDAVLFLRGDDGKLRLGVRRASQIEGTAALSAQYNQNMNHNNFSEVA 286
Query: 237 HAVSTGTMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGT 296
HA+ST ++F++ Y P+ S S FI+P ++++ + + IGMRFK R E E+A E+R G
Sbjct: 287 HAISTHSVFSISYNPKASWSNFIIPAPKFLKVVDYPFCIGMRFKARVESEDASERRSPGI 346
Query: 297 IVGIEDADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEXXXXXXXXXXXXXXRPKR 356
I GI D DP RW SKWRCL VRWD+ +RVS W+IE PKR
Sbjct: 347 ISGISDLDPIRWPGSKWRCLLVRWDDIVANGHQQRVSPWEIEPSGSISNSGSFVTTGPKR 406
Query: 357 PRSNMLPSSPDSSVLTREGSSKLNVDPSSATGFSRVLQGQE 397
R PD V EG + + S F RVLQGQE
Sbjct: 407 SRIGFSSGKPDIPV--SEGIRATDFEESLR--FQRVLQGQE 443
Score = 53 (23.7 bits), Expect = 3.4e-101, Sum P(3) = 3.4e-101
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 561 LPPSNFENSAHSRELMPKS----AMVQDQEAGKSKDCKLFGIPL 600
LPPS +S+ S L+ S ++D G + C+LFG PL
Sbjct: 517 LPPS--VSSSPSSVLLTNSNSPNGRLEDHHGGSGR-CRLFGFPL 557
Score = 45 (20.9 bits), Expect = 3.4e-101, Sum P(3) = 3.4e-101
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 367 DSSVLTREGSSKLNVDPSSATGFSRVLQGQE 397
D R G K + + GF +VLQGQE
Sbjct: 454 DGGAGARRGRFK-GTEFGDSYGFHKVLQGQE 483
>TAIR|locus:2036288 [details] [associations]
symbol:ARF22 "auxin response factor 22" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 ProtClustDB:CLSN2681760
EMBL:AC023913 EMBL:AY669796 IPI:IPI00545778 PIR:C86468
RefSeq:NP_174699.2 UniGene:At.51186 ProteinModelPortal:Q9C8N7
SMR:Q9C8N7 IntAct:Q9C8N7 EnsemblPlants:AT1G34390.1 GeneID:840341
KEGG:ath:AT1G34390 GeneFarm:3426 TAIR:At1g34390 OMA:NITTNAN
PhylomeDB:Q9C8N7 Genevestigator:Q9C8N7 Uniprot:Q9C8N7
Length = 598
Score = 971 (346.9 bits), Expect = 4.6e-101, Sum P(2) = 4.6e-101
Identities = 181/336 (53%), Positives = 246/336 (73%)
Query: 3 LYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVI 62
+Y +LW CAGPL +P+ GE++YYFPQG+IE VEAST + ++ P+ DLPSK+ CRVI
Sbjct: 24 MYEQLWKLCAGPLCDIPKLGEKIYYFPQGNIELVEASTREELNELKPICDLPSKLQCRVI 83
Query: 63 NVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHG 122
+QLK E ++DE +A++TL+P++ Q + E R V+SF K LTASDTS G
Sbjct: 84 AIQLKVENNSDETYAEITLMPDTTQVVIPTQNENQF----RPLVNSFTKVLTASDTS--G 137
Query: 123 GFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFV 182
GF V ++HA ECLPPLDMS+ PTQEL A DLHGN+WRF H +RG P+RHLL +GW+ F
Sbjct: 138 GFFVPKKHAIECLPPLDMSQPLPTQELLATDLHGNQWRFNHNYRGTPQRHLLTTGWNAFT 197
Query: 183 SSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTG 242
+SK+LVAGD +F+RGE GELRVG+RRA QQGN+PSS+IS SM GV+A+A HA
Sbjct: 198 TSKKLVAGDVIVFVRGETGELRVGIRRAGHQQGNIPSSIISIESMRHGVIASAKHAFDNQ 257
Query: 243 TMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIED 302
MF V YKPR+S +FIV YD++++++ N +++G RF MRFEG++ E+R+ GTI+G+ D
Sbjct: 258 CMFIVVYKPRSS--QFIVSYDKFLDAVNNKFNVGSRFTMRFEGDDFSERRYFGTIIGVSD 315
Query: 303 ADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIE 338
P W+ S+WR L+V+WDE ++ RP +VS W+IE
Sbjct: 316 FSPH-WKCSEWRNLEVQWDEFASFSRPNKVSPWEIE 350
Score = 51 (23.0 bits), Expect = 4.6e-101, Sum P(2) = 4.6e-101
Identities = 27/97 (27%), Positives = 44/97 (45%)
Query: 600 LFSNHVMPEPVVSHRNTM-NEPAGNLDQQ----FRAFEXXXXXXXXXXXXLAD-DNQV-- 651
L S V P P +++ N M + N+ + FR F + + +++
Sbjct: 422 LMSYPVQPMPKLNYNNQMVTQIEENITTKTGTNFRLFGVSLVTPSVIKDPIEEIGSEISK 481
Query: 652 FNEHEKPSQPSQT--HTKDVRSKTQCGSTRSCTKVPL 686
E +K Q SQT +++SK Q STR+CTKV +
Sbjct: 482 LTEGKKFGQ-SQTLRSPTEIQSK-QFSSTRTCTKVQM 516
Score = 37 (18.1 bits), Expect = 1.4e-99, Sum P(2) = 1.4e-99
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 594 KLFGIPLFSNHVMPEPV 610
+LFG+ L + V+ +P+
Sbjct: 456 RLFGVSLVTPSVIKDPI 472
>TAIR|locus:2204237 [details] [associations]
symbol:ARF6 "auxin response factor 6" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009733 "response
to auxin stimulus" evidence=IMP] [GO:0009908 "flower development"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009855 "determination of bilateral symmetry" evidence=RCA]
[GO:0009886 "post-embryonic morphogenesis" evidence=RCA]
[GO:0009887 "organ morphogenesis" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010014
"meristem initiation" evidence=RCA] [GO:0010051 "xylem and phloem
pattern formation" evidence=RCA] [GO:0010073 "meristem maintenance"
evidence=RCA] [GO:0048439 "flower morphogenesis" evidence=RCA]
[GO:0048481 "ovule development" evidence=RCA] [GO:0048507 "meristem
development" evidence=RCA] [GO:0048519 "negative regulation of
biological process" evidence=RCA] InterPro:IPR003311
InterPro:IPR003340 InterPro:IPR010525 InterPro:IPR011525
Pfam:PF02309 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009733 GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC025295
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
GO:GO:0009908 HOGENOM:HOG000241141 EMBL:AF013467 EMBL:AY669788
EMBL:EU550049 EMBL:EU550050 EMBL:EU550051 EMBL:EU550052
EMBL:EU550053 EMBL:EU550054 EMBL:EU550055 EMBL:EU550056
EMBL:EU550057 EMBL:EU550058 EMBL:EU550059 EMBL:EU550060
EMBL:EU550061 EMBL:EU550062 EMBL:EU550063 EMBL:EU550064
EMBL:EU550065 EMBL:EU550066 EMBL:EU550067 EMBL:EU550068
EMBL:EU550069 EMBL:EU550070 EMBL:EU550071 EMBL:EU550072
IPI:IPI00533211 IPI:IPI00656643 PIR:F86427 RefSeq:NP_001031115.1
RefSeq:NP_174323.1 UniGene:At.21939 ProteinModelPortal:Q9ZTX8
SMR:Q9ZTX8 IntAct:Q9ZTX8 STRING:Q9ZTX8 PaxDb:Q9ZTX8 PRIDE:Q9ZTX8
EnsemblPlants:AT1G30330.2 GeneID:839913 KEGG:ath:AT1G30330
GeneFarm:3369 TAIR:At1g30330 eggNOG:NOG288258 InParanoid:Q9ZTX8
OMA:ANSHWRS PhylomeDB:Q9ZTX8 ProtClustDB:CLSN2686713
Genevestigator:Q9ZTX8 GermOnline:AT1G30330 Uniprot:Q9ZTX8
Length = 935
Score = 999 (356.7 bits), Expect = 1.0e-100, P = 1.0e-100
Identities = 195/364 (53%), Positives = 254/364 (69%)
Query: 3 LYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRV 61
L +ELWHACAGPLV++P G RV YFPQGH EQV ASTN+ D +P Y L +++C++
Sbjct: 22 LNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLHPQLICQL 81
Query: 62 INVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTH 121
NV + A+ +TDEV+AQ+TL P + Q++ R + FCKTLTASDTSTH
Sbjct: 82 HNVTMHADVETDEVYAQMTLQPLNAQEQKDPYLPAELGVPSRQPTNYFCKTLTASDTSTH 141
Query: 122 GGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVF 181
GGFSV RR A++ PPLD S+QPP QEL A+DLH NEW+FRHIFRGQP+RHLL +GWSVF
Sbjct: 142 GGFSVPRRAAEKVFPPLDYSQQPPAQELMARDLHDNEWKFRHIFRGQPKRHLLTTGWSVF 201
Query: 182 VSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVST 241
VS+KRLVAGD+ +F+ + +L +G+RRA R Q +PSSV+SS SMHLG+LA A HA +T
Sbjct: 202 VSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAAT 261
Query: 242 GTMFTVYYKPRTSPSEFIVPYDQYMESIKNN-YSIGMRFKMRFEGEEAPEQRFTGTIVGI 300
+ FT++Y PR SPSEF++P +Y++++ + S+GMRF+M FE EE+ +R+ GTI GI
Sbjct: 262 NSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGI 321
Query: 301 EDADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEXXXXXXXXXXXXXXRPKRPRSN 360
D DP RW +S WR +KV WDE++ R RVSLW+IE R KRP
Sbjct: 322 CDLDPTRWANSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPP 381
Query: 361 MLPS 364
LPS
Sbjct: 382 GLPS 385
>TAIR|locus:2026145 [details] [associations]
symbol:ARF12 "auxin response factor 12" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009725 "response
to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 EMBL:AY669792 EMBL:AC007454
IPI:IPI00544760 PIR:C86467 RefSeq:NP_174691.2 UniGene:At.51185
ProteinModelPortal:Q9XID4 SMR:Q9XID4 IntAct:Q9XID4
EnsemblPlants:AT1G34310.1 GeneID:840331 KEGG:ath:AT1G34310
GeneFarm:3390 TAIR:At1g34310 eggNOG:NOG264447 PhylomeDB:Q9XID4
ProtClustDB:CLSN2681760 ArrayExpress:Q9XID4 Genevestigator:Q9XID4
GermOnline:AT1G34310 Uniprot:Q9XID4
Length = 593
Score = 965 (344.8 bits), Expect = 2.0e-100, Sum P(2) = 2.0e-100
Identities = 184/364 (50%), Positives = 249/364 (68%)
Query: 3 LYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVI 62
+Y +LW CAGPL +P+ GE+VYYFPQGHIE VE ST + ++ P+ DLPSK+ CRVI
Sbjct: 24 VYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVETSTREELNELQPICDLPSKLQCRVI 83
Query: 63 NVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHG 122
+ LK E ++DE +A++TL+P++ Q + E R V+SF K LTASDTS HG
Sbjct: 84 AIHLKVENNSDETYAEITLMPDTTQVVIPTQNENQF----RPLVNSFTKVLTASDTSAHG 139
Query: 123 GFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFV 182
GF V ++HA ECLP LDMS+ P QEL A DLHGN+WRF H +RG P+RHLL +GW+ F
Sbjct: 140 GFFVPKKHAIECLPSLDMSQPLPAQELLAIDLHGNQWRFNHNYRGTPQRHLLTTGWNAFT 199
Query: 183 SSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTG 242
+SK+LVAGD +F+RGE GELRVG+RRA QQGN+PSS++S M GV+A+A HA
Sbjct: 200 TSKKLVAGDVIVFVRGETGELRVGIRRARHQQGNIPSSIVSIDCMRHGVVASAKHAFDNQ 259
Query: 243 TMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIED 302
MFTV YKPR+S +FIV YD++++++ N +++G RF MR EG++ E+R GTI+G+ D
Sbjct: 260 CMFTVVYKPRSS--KFIVSYDKFLDAVNNKFNVGSRFTMRLEGDDFSERRCFGTIIGVSD 317
Query: 303 ADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEXXXXXXXXXXXXXXRPKRPRS-NM 361
P W+ S+WR L+V+WDE ++ P P++VS W IE + KR R N
Sbjct: 318 FSPH-WKCSEWRSLEVQWDEFTSFPGPKKVSPWDIEHLMPAINVPRSFLLKNKRLREVNE 376
Query: 362 LPSS 365
+ SS
Sbjct: 377 IGSS 380
Score = 51 (23.0 bits), Expect = 2.0e-100, Sum P(2) = 2.0e-100
Identities = 35/144 (24%), Positives = 62/144 (43%)
Query: 552 SHGNWLMPPLPPSNFENSAHSRELMPKSAMVQDQEAGKSKDCKLFGIPLFSNHVMPEPVV 611
S + L+PP+ EN S P + ++ ++A ++D L S V P P +
Sbjct: 379 SSSSHLLPPILTQGQENEQLS-VASPMNISLRYRDA--TEDAMNPSKLLMSYPVQPMPKL 435
Query: 612 SHRNTM-NEPAGNLDQQ----FRAFEXXXXXXXXXXXXLAD-DNQVFNEHE-KPSQPSQT 664
++ N M E N+ + FR F + + +++ E K SQT
Sbjct: 436 NYNNQMVTEMEENITTKTGTNFRLFGVTLDTPPVIKDPIEEIGSEISKLTEGKKFGLSQT 495
Query: 665 --HTKDVRSKTQCGSTRSCTKVPL 686
++++K Q S+R+CTKV +
Sbjct: 496 LRSPTEIQNK-QFSSSRTCTKVQM 518
>TAIR|locus:2009298 [details] [associations]
symbol:ARF21 "auxin response factor 21" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 eggNOG:NOG264447
ProtClustDB:CLSN2681760 EMBL:AC023279 EMBL:AC023913 IPI:IPI00539451
PIR:E86468 RefSeq:NP_174701.2 UniGene:At.51930
ProteinModelPortal:Q9C8N9 SMR:Q9C8N9 EnsemblPlants:AT1G34410.1
GeneID:840344 KEGG:ath:AT1G34410 GeneFarm:3425 TAIR:At1g34410
PhylomeDB:Q9C8N9 Genevestigator:Q9C8N9 GermOnline:AT1G34410
Uniprot:Q9C8N9
Length = 606
Score = 957 (341.9 bits), Expect = 1.8e-99, Sum P(2) = 1.8e-99
Identities = 174/336 (51%), Positives = 244/336 (72%)
Query: 3 LYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVI 62
+Y +LW CAGPL +P+ GE VYYFPQG+IE V+AST + ++ P+ DLPSK+ CRVI
Sbjct: 24 MYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVQASTREELNELQPICDLPSKLQCRVI 83
Query: 63 NVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHG 122
+ LK E ++DE++A++TL+P++ Q + E R V+SF K LTASDTS +G
Sbjct: 84 AIHLKVENNSDEIYAEITLMPDTTQVVIPTQSENRF----RPLVNSFTKVLTASDTSAYG 139
Query: 123 GFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFV 182
GFSV ++HA ECLPPLDMS+ P QE+ A DLH N+WRFRH +RG P+RH L +GW+ F+
Sbjct: 140 GFSVPKKHAIECLPPLDMSQPLPAQEILAIDLHDNQWRFRHNYRGTPQRHSLTTGWNEFI 199
Query: 183 SSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTG 242
+SK+LV GD +F+RGE GELRVG+RRA QQGN+PSS++S M GV+A+A HA
Sbjct: 200 TSKKLVKGDVIVFVRGETGELRVGIRRARHQQGNIPSSIVSIDCMRHGVIASAKHAFDNQ 259
Query: 243 TMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIED 302
+F V YKPR+S +FIV YD++++++ N +++G RF MRFEG++ E+R+ GTI+G+ D
Sbjct: 260 CIFIVVYKPRSS--QFIVSYDKFLDAVNNKFNVGSRFTMRFEGDDFSERRYFGTIIGVSD 317
Query: 303 ADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIE 338
P W+ S+WR L+V+WDE ++ RP +VS W+IE
Sbjct: 318 FSPH-WKCSEWRSLEVQWDEFASFSRPNKVSPWEIE 352
Score = 50 (22.7 bits), Expect = 1.8e-99, Sum P(2) = 1.8e-99
Identities = 27/97 (27%), Positives = 41/97 (42%)
Query: 600 LFSNHVMPEPVVSHRNTM-NEPAGNLDQQ----FRAFEXXXXX---XXXXXXXLADDNQV 651
L S V P P +++ N M + N+ + FR F + D
Sbjct: 424 LMSYPVQPMPKLNYNNQMVTQIEENITTKAGTNFRLFGVTLDTPPMIKDPIKQIGSDISK 483
Query: 652 FNEHEKPSQPSQTHTK--DVRSKTQCGSTRSCTKVPL 686
E +K Q SQT +++SK Q S+R+CTKV +
Sbjct: 484 LTERKKFGQ-SQTLRSPIEIQSK-QFSSSRTCTKVQM 518
>TAIR|locus:2206717 [details] [associations]
symbol:ARF20 "auxin response factor 20" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AC069160 HOGENOM:HOG000241141
eggNOG:NOG264447 ProtClustDB:CLSN2681760 EMBL:AY669795
IPI:IPI00656906 PIR:D86473 RefSeq:NP_174758.2 UniGene:At.51187
ProteinModelPortal:Q9C7I9 SMR:Q9C7I9 IntAct:Q9C7I9 PaxDb:Q9C7I9
PRIDE:Q9C7I9 EnsemblPlants:AT1G35240.1 GeneID:840413
KEGG:ath:AT1G35240 GeneFarm:3424 TAIR:At1g35240 PhylomeDB:Q9C7I9
Genevestigator:Q9C7I9 GermOnline:AT1G35240 Uniprot:Q9C7I9
Length = 590
Score = 936 (334.5 bits), Expect = 4.2e-98, Sum P(2) = 4.2e-98
Identities = 175/356 (49%), Positives = 242/356 (67%)
Query: 3 LYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVI 62
+Y +LW CAGPL +P+ GE VYYFPQG+IE V+AST + ++ P+ DLPSK+ CRVI
Sbjct: 24 MYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVDASTREELNELQPICDLPSKLQCRVI 83
Query: 63 NVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHG 122
+ LK E ++DE +A++TL+P++ Q + E R V+SF K LTASDTS +G
Sbjct: 84 AIHLKVENNSDETYAEITLMPDTTQVVIPTQSENQF----RPLVNSFTKVLTASDTSAYG 139
Query: 123 GFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFV 182
GF V ++HA ECLPPL + P QEL AKDLHGN+WRFRH +RG P+RH L +GW+ F
Sbjct: 140 GFFVPKKHAIECLPPLPL----PAQELLAKDLHGNQWRFRHSYRGTPQRHSLTTGWNEFT 195
Query: 183 SSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTG 242
+SK+LV GD +F+RGE GELRVG+RRA QQGN+PSS++S M GV+A+A HA+
Sbjct: 196 TSKKLVKGDVIVFVRGETGELRVGIRRARHQQGNIPSSIVSIDCMRHGVIASAKHALDNQ 255
Query: 243 TMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIED 302
+F V YKP S+FIV YD++++++ N + +G RF MRFEG++ E+R+ GTI+G+ D
Sbjct: 256 CIFIVVYKPSIRSSQFIVSYDKFLDAMNNKFIVGSRFTMRFEGDDFSERRYFGTIIGVND 315
Query: 303 ADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEXXXXXXXXXXXXXXRPKRPR 358
P W+ S+WR L+V+WDE ++ RP +VS W+IE + KR R
Sbjct: 316 FSPH-WKCSEWRSLEVQWDEFASFSRPNKVSPWEIEHLMSALNVPRSSLLKNKRLR 370
Score = 58 (25.5 bits), Expect = 4.2e-98, Sum P(2) = 4.2e-98
Identities = 29/97 (29%), Positives = 43/97 (44%)
Query: 600 LFSNHVMPEPVVSHRNTM-NEPAGNLDQQ----FRAFEXXXXXXXXXXXXLAD---DNQV 651
L S V P P +++ N M + N+ + FR F + + D
Sbjct: 408 LMSYPVQPMPKLNYNNQMVTQIEENITTKAVTNFRLFGVSLAIPLVIKDPIEEIGSDISK 467
Query: 652 FNEHEKPSQPSQTHTK--DVRSKTQCGSTRSCTKVPL 686
E +K Q SQT +++SK Q GSTR+CTKV +
Sbjct: 468 LTEGKKFGQ-SQTLRSPIEIQSK-QFGSTRTCTKVQM 502
>TAIR|locus:2202205 [details] [associations]
symbol:ARF19 "auxin response factor 19" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0009725 "response to hormone
stimulus" evidence=IEA] [GO:0009733 "response to auxin stimulus"
evidence=RCA;IMP;NAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0048366 "leaf
development" evidence=IGI] [GO:0048527 "lateral root development"
evidence=IGI;RCA] [GO:0009723 "response to ethylene stimulus"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IDA] [GO:0010311
"lateral root formation" evidence=IGI] [GO:0007155 "cell adhesion"
evidence=RCA] [GO:0009741 "response to brassinosteroid stimulus"
evidence=RCA] [GO:0010090 "trichome morphogenesis" evidence=RCA]
[GO:0010583 "response to cyclopentenone" evidence=RCA] [GO:0045010
"actin nucleation" evidence=RCA] [GO:0048765 "root hair cell
differentiation" evidence=RCA] [GO:0071555 "cell wall organization"
evidence=RCA] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0046983 "protein dimerization activity"
evidence=IDA] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009733
GO:GO:0009734 GO:GO:0009723 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0046983 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0010311 GO:GO:0048366 HOGENOM:HOG000241141
EMBL:U53672 EMBL:AY008390 EMBL:AY669794 EMBL:AC069143 EMBL:AB493467
EMBL:AJ441312 IPI:IPI00534870 PIR:G86325 RefSeq:NP_173356.1
UniGene:At.10488 ProteinModelPortal:Q8RYC8 SMR:Q8RYC8 IntAct:Q8RYC8
STRING:Q8RYC8 EnsemblPlants:AT1G19220.1 GeneID:838505
KEGG:ath:AT1G19220 GeneFarm:3421 TAIR:At1g19220 eggNOG:NOG331338
InParanoid:Q8RYC8 OMA:WEIEPVI PhylomeDB:Q8RYC8
ProtClustDB:CLSN2914206 Genevestigator:Q8RYC8 GermOnline:AT1G19220
Uniprot:Q8RYC8
Length = 1086
Score = 971 (346.9 bits), Expect = 9.4e-98, P = 9.4e-98
Identities = 192/375 (51%), Positives = 249/375 (66%)
Query: 5 TELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRVIN 63
++LWHACAGPLV++P G V YFPQGH EQV AS + D +P Y +LPSK++C + +
Sbjct: 22 SQLWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQTDF-IPNYPNLPSKLICLLHS 80
Query: 64 VQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGG 123
V L A+ +TDEV+AQ+TL P + D A+ R FCKTLTASDTSTHGG
Sbjct: 81 VTLHADTETDEVYAQMTLQPVNKYDREALLASDMGLKLNRQPTEFFCKTLTASDTSTHGG 140
Query: 124 FSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVS 183
FSV RR A++ PPLD S QPP QE+ AKDLH W FRHI+RGQP+RHLL +GWSVFVS
Sbjct: 141 FSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVS 200
Query: 184 SKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGT 243
+KRL AGD+ +F+R E +L +G+RRA RQ + SSVISS SMH+G+LA A HA + +
Sbjct: 201 TKRLFAGDSVLFVRDEKSQLMLGIRRANRQTPTLSSSVISSDSMHIGILAAAAHANANSS 260
Query: 244 MFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDA 303
FT+++ PR SPSEF+VP +Y +++ S+GMRF+M FE E+ +R+ GT+ GI D
Sbjct: 261 PFTIFFNPRASPSEFVVPLAKYNKALYAQVSLGMRFRMMFETEDCGVRRYMGTVTGISDL 320
Query: 304 DPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEXXXXXXXXXXXXXXRPKRPRSNMLP 363
DP RW+ S+WR L+V WDE++ RP RVS+W+IE RPK PR P
Sbjct: 321 DPVRWKGSQWRNLQVGWDESTAGDRPSRVSIWEIEPVITPFYICPPPFFRPKYPRQ---P 377
Query: 364 SSPDSSVLTREGSSK 378
PD L E + K
Sbjct: 378 GMPDDE-LDMENAFK 391
>TAIR|locus:2152642 [details] [associations]
symbol:ARF8 "auxin response factor 8" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS;TAS]
[GO:0009733 "response to auxin stimulus" evidence=IMP] [GO:0009908
"flower development" evidence=IGI] [GO:0009855 "determination of
bilateral symmetry" evidence=RCA] [GO:0009886 "post-embryonic
morphogenesis" evidence=RCA] [GO:0009887 "organ morphogenesis"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0010051 "xylem and phloem pattern formation"
evidence=RCA] [GO:0048439 "flower morphogenesis" evidence=RCA]
[GO:0048481 "ovule development" evidence=RCA] [GO:0048507 "meristem
development" evidence=RCA] [GO:0048519 "negative regulation of
biological process" evidence=RCA] InterPro:IPR003311
InterPro:IPR003340 InterPro:IPR010525 InterPro:IPR011525
Pfam:PF02309 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
PROSITE:PS50962 SMART:SM01019 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009733 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0009908 HOGENOM:HOG000241141
ProtClustDB:CLSN2686713 EMBL:AF042196 EMBL:AY669790 EMBL:AB024026
IPI:IPI00525703 IPI:IPI00846789 RefSeq:NP_001078672.1
RefSeq:NP_198518.1 UniGene:At.23446 ProteinModelPortal:Q9FGV1
SMR:Q9FGV1 IntAct:Q9FGV1 STRING:Q9FGV1 PaxDb:Q9FGV1 PRIDE:Q9FGV1
EnsemblPlants:AT5G37020.1 GeneID:833672 KEGG:ath:AT5G37020
GeneFarm:3372 TAIR:At5g37020 eggNOG:NOG292968 InParanoid:Q9FGV1
OMA:NDAYLPA PhylomeDB:Q9FGV1 Genevestigator:Q9FGV1
GermOnline:AT5G37020 Uniprot:Q9FGV1
Length = 811
Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
Identities = 190/367 (51%), Positives = 249/367 (67%)
Query: 3 LYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRV 61
L +ELWHACAGPLV++P G RV YFPQGH EQV A+TN+ D +P Y LP +++C++
Sbjct: 19 LNSELWHACAGPLVSLPSSGSRVVYFPQGHSEQVAATTNKEVDGHIPNYPSLPPQLICQL 78
Query: 62 INVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTH 121
NV + A+ +TDEV+AQ+TL P + +++ + + FCKTLTASDTSTH
Sbjct: 79 HNVTMHADVETDEVYAQMTLQPLTPEEQKETFVPIELGIPSKQPSNYFCKTLTASDTSTH 138
Query: 122 GGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVF 181
GGFSV RR A++ PPLD + QPP QEL A+DLH EW+FRHIFRGQP+RHLL +GWSVF
Sbjct: 139 GGFSVPRRAAEKVFPPLDYTLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVF 198
Query: 182 VSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVST 241
VS+KRLVAGD+ IF+R E +L +G+R A R Q VPSSV+SS SMH+G+LA A HA +T
Sbjct: 199 VSAKRLVAGDSVIFIRNEKNQLFLGIRHATRPQTIVPSSVLSSDSMHIGLLAAAAHASAT 258
Query: 242 GTMFTVYYKPRTSPSEFIVPYDQYMESI-KNNYSIGMRFKMRFEGEEAPEQRFTGTIVGI 300
+ FTV++ PR S SEF++ +Y++++ S+GMRF+M FE EE+ +R+ GTI GI
Sbjct: 259 NSCFTVFFHPRASQSEFVIQLSKYIKAVFHTRISVGMRFRMLFETEESSVRRYMGTITGI 318
Query: 301 EDADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEXXXXXXXXXXXXXXRPKRPRSN 360
D D RW +S WR +KV WDE++ R RVSLW+IE R KRP
Sbjct: 319 SDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHA 378
Query: 361 MLPSSPD 367
S PD
Sbjct: 379 GTSSLPD 385
>TAIR|locus:2035454 [details] [associations]
symbol:MP "MONOPTEROS" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA;ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;IEP]
[GO:0009725 "response to hormone stimulus" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS;TAS] [GO:0009733 "response to auxin
stimulus" evidence=IEP;RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042802 "identical protein binding" evidence=IPI]
[GO:0016020 "membrane" evidence=IDA] [GO:0009790 "embryo
development" evidence=IGI] [GO:0009908 "flower development"
evidence=IGI] [GO:0010305 "leaf vascular tissue pattern formation"
evidence=IGI] [GO:0048364 "root development" evidence=IGI]
[GO:0048507 "meristem development" evidence=IGI;RCA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IDA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=RCA] [GO:0007155 "cell adhesion" evidence=RCA] [GO:0009741
"response to brassinosteroid stimulus" evidence=RCA] [GO:0009855
"determination of bilateral symmetry" evidence=RCA] [GO:0009886
"post-embryonic morphogenesis" evidence=RCA] [GO:0009887 "organ
morphogenesis" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009944 "polarity specification of
adaxial/abaxial axis" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010014 "meristem initiation"
evidence=RCA] [GO:0010051 "xylem and phloem pattern formation"
evidence=IMP;RCA] [GO:0010073 "meristem maintenance" evidence=RCA]
[GO:0010090 "trichome morphogenesis" evidence=RCA] [GO:0016246 "RNA
interference" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0045010 "actin nucleation"
evidence=RCA] [GO:0048439 "flower morphogenesis" evidence=RCA]
[GO:0048481 "ovule development" evidence=RCA] [GO:0048519 "negative
regulation of biological process" evidence=RCA] [GO:0048527
"lateral root development" evidence=RCA] [GO:0048765 "root hair
cell differentiation" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0071555 "cell wall organization"
evidence=RCA] [GO:0009942 "longitudinal axis specification"
evidence=IMP] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009733
GO:GO:0009734 GO:GO:0016020 GO:GO:0003700 GO:GO:0006351
GO:GO:0048364 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0044212 GO:GO:0009908 GO:GO:0048507
EMBL:AC007797 KO:K14486 EMBL:AF037228 EMBL:AF037229 EMBL:AF334716
EMBL:BT002050 EMBL:BT008805 EMBL:AB199792 EMBL:U79557 EMBL:EF598523
EMBL:EF598524 EMBL:EF598525 EMBL:EF598526 EMBL:EF598527
EMBL:EF598528 EMBL:EF598529 EMBL:EF598530 EMBL:EF598531
EMBL:EF598532 EMBL:EF598533 EMBL:EF598534 EMBL:EF598535
EMBL:EF598536 EMBL:EF598537 EMBL:EF598538 EMBL:EF598539
EMBL:EF598540 EMBL:EF598541 EMBL:EF598542 EMBL:EF598543
EMBL:EF598544 EMBL:EF598545 EMBL:EF598546 IPI:IPI00538603
PIR:G86331 PIR:T51807 RefSeq:NP_173414.1 UniGene:At.10494
UniGene:At.41731 ProteinModelPortal:P93024 SMR:P93024 IntAct:P93024
STRING:P93024 PaxDb:P93024 PRIDE:P93024 EnsemblPlants:AT1G19850.1
GeneID:838573 KEGG:ath:AT1G19850 GeneFarm:3368 TAIR:At1g19850
eggNOG:NOG291711 InParanoid:P93024 OMA:ARYNKAT PhylomeDB:P93024
ProtClustDB:CLSN2682929 Genevestigator:P93024 GermOnline:AT1G19850
GO:GO:0010305 GO:GO:0009942 Uniprot:P93024
Length = 902
Score = 959 (342.6 bits), Expect = 1.8e-96, P = 1.8e-96
Identities = 183/336 (54%), Positives = 237/336 (70%)
Query: 5 TELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRVIN 63
+ELWHACAGPLV +P+ G VYYF QGH EQV ST + A Q+P Y +LPS+++C+V N
Sbjct: 53 SELWHACAGPLVCLPQVGSLVYYFSQGHSEQVAVSTRRSATTQVPNYPNLPSQLMCQVHN 112
Query: 64 VQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGG 123
V L A+ D+DE++AQ++L P ++ + + + FCKTLTASDTSTHGG
Sbjct: 113 VTLHADKDSDEIYAQMSLQPVHSERDVFPVPDFGMLRGSKHPTEFFCKTLTASDTSTHGG 172
Query: 124 FSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVS 183
FSV RR A++ PPLD S QPPTQEL +DLH N W FRHI+RGQP+RHLL +GWS+FV
Sbjct: 173 FSVPRRAAEKLFPPLDYSAQPPTQELVVRDLHENTWTFRHIYRGQPKRHLLTTGWSLFVG 232
Query: 184 SKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGT 243
SKRL AGD+ +F+R E +L VGVRRA RQQ +PSSV+S+ SMH+GVLA A HA + T
Sbjct: 233 SKRLRAGDSVLFIRDEKSQLMVGVRRANRQQTALPSSVLSADSMHIGVLAAAAHATANRT 292
Query: 244 MFTVYYKPRTSPSEFIVPYDQYMESI-KNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIED 302
F ++Y PR P+EF++P +Y ++I + S+GMRF M FE E++ ++R+ GTIVGI D
Sbjct: 293 PFLIFYNPRACPAEFVIPLAKYRKAICGSQLSVGMRFGMMFETEDSGKRRYMGTIVGISD 352
Query: 303 ADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIE 338
DP RW SKWR L+V WDE +P RVS W IE
Sbjct: 353 LDPLRWPGSKWRNLQVEWDEPGCNDKPTRVSPWDIE 388
>TAIR|locus:2008991 [details] [associations]
symbol:ARF13 "AUXIN RESPONSE FACTOR 13" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006863 "purine nucleobase transport" evidence=RCA]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GO:GO:0005634 GO:GO:0009734 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 IPI:IPI00938986 RefSeq:NP_001154393.1
UniGene:At.51184 ProteinModelPortal:F4HT52 SMR:F4HT52 PRIDE:F4HT52
EnsemblPlants:AT1G34170.3 GeneID:840316 KEGG:ath:AT1G34170
OMA:PEFCNMA ArrayExpress:F4HT52 Uniprot:F4HT52
Length = 546
Score = 694 (249.4 bits), Expect = 2.9e-88, Sum P(3) = 2.9e-88
Identities = 130/252 (51%), Positives = 174/252 (69%)
Query: 3 LYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVI 62
+Y +LW+ CAGPL +P+ GE+VYYFPQGHIE +E ST D P++DLPSK+ CRV+
Sbjct: 22 MYEKLWNICAGPLCVLPKPGEKVYYFPQGHIELIENSTRDELDHIRPIFDLPSKLRCRVV 81
Query: 63 NVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHG 122
+ K + +TDEV+AQ++L+P++ + V R V+ F K LTASD S G
Sbjct: 82 AIDRKVDKNTDEVYAQISLMPDTTE----VMTHNTTMDTRRPIVYFFSKILTASDVSLSG 137
Query: 123 GFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSG--WSV 180
G + +++A EC PPLDMS+ TQ L AKDL+G EW F+H+FRG P+RH+ SG WSV
Sbjct: 138 GLIIPKQYAIECFPPLDMSQPISTQNLVAKDLYGQEWSFKHVFRGTPQRHMFTSGGGWSV 197
Query: 181 FVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVS 240
F ++KRL+ GD F+ LRGENGELR G+RRA QQG++PSSVIS++ M GV+A+ +A
Sbjct: 198 FATTKRLIVGDIFVLLRGENGELRFGIRRAKHQQGHIPSSVISANCMQHGVIASVVNAFK 257
Query: 241 TGTMFTVYYKPR 252
T MF V YKPR
Sbjct: 258 TKCMFNVVYKPR 269
Score = 180 (68.4 bits), Expect = 2.9e-88, Sum P(3) = 2.9e-88
Identities = 31/66 (46%), Positives = 47/66 (71%)
Query: 273 YSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRCLKVRWDETSTIPRPERV 332
+++ + +M+FEG++ E+R+ GTI+G+ D P W+DS+WR LKV+WDE S RP +V
Sbjct: 262 FNVVYKPRMQFEGKDFSEKRYDGTIIGVNDMSPH-WKDSEWRSLKVQWDELSPFLRPNQV 320
Query: 333 SLWKIE 338
S W IE
Sbjct: 321 SPWDIE 326
Score = 40 (19.1 bits), Expect = 2.9e-88, Sum P(3) = 2.9e-88
Identities = 18/66 (27%), Positives = 30/66 (45%)
Query: 540 DYPMLNGNRVEHSHGNWLMPPLPPSNFENSAHSRELMPKSAMVQDQEAGKSKDCKLFGIP 599
D L+G + HS L+ +P N+ NS + + P+ +D + C LFG+
Sbjct: 386 DSKFLSGLLLNHS----LLA-IPNENY-NS--DQMIQPRK---EDITTEATTSCLLFGVD 434
Query: 600 LFSNHV 605
L H+
Sbjct: 435 LTKVHM 440
>TAIR|locus:2126460 [details] [associations]
symbol:ARF16 "auxin response factor 16" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA;IDA] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0035198 "miRNA binding" evidence=ISS] [GO:0007389 "pattern
specification process" evidence=IDA] [GO:0009733 "response to auxin
stimulus" evidence=IEP] [GO:0048829 "root cap development"
evidence=IGI;IMP] [GO:0051301 "cell division" evidence=IGI]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 GO:GO:0005634
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009733 GO:GO:0009734
GO:GO:0051301 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
EMBL:AL161576 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0048829 GO:GO:0035198 GO:GO:0007389
HOGENOM:HOG000241141 eggNOG:NOG315592 EMBL:AL078464 EMBL:AY059792
EMBL:AY091198 EMBL:EU550120 EMBL:EU550121 EMBL:EU550122
EMBL:EU550123 EMBL:EU550124 EMBL:EU550125 EMBL:EU550126
EMBL:EU550127 EMBL:EU550128 EMBL:EU550129 EMBL:EU550130
EMBL:EU550131 EMBL:EU550132 EMBL:EU550133 EMBL:EU550134
EMBL:EU550135 EMBL:EU550136 EMBL:EU550137 EMBL:EU550138
EMBL:EU550139 EMBL:EU550140 EMBL:EU550141 EMBL:EU550142
EMBL:EU550143 IPI:IPI00528149 PIR:T08984 RefSeq:NP_567841.1
UniGene:At.3365 ProteinModelPortal:Q93YR9 SMR:Q93YR9 IntAct:Q93YR9
STRING:Q93YR9 EnsemblPlants:AT4G30080.1 GeneID:829131
KEGG:ath:AT4G30080 GeneFarm:3406 TAIR:At4g30080 InParanoid:Q93YR9
OMA:GHAENAY PhylomeDB:Q93YR9 ProtClustDB:CLSN2917636
Genevestigator:Q93YR9 GermOnline:AT4G30080 Uniprot:Q93YR9
Length = 670
Score = 483 (175.1 bits), Expect = 7.4e-69, Sum P(3) = 7.4e-69
Identities = 101/220 (45%), Positives = 141/220 (64%)
Query: 6 ELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQ 65
+LWHACAG +V +P +V+YFPQGH E + + V +P+ P +LCRV+ ++
Sbjct: 19 QLWHACAGGMVRMPPMNSKVFYFPQGHAEN---AYDCVDFGNLPI---PPMVLCRVLAIK 72
Query: 66 LKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXR-FHVHS-----FCKTLTASDTS 119
A+ ++DEVFA++ L+P +D+ V+ E F +S F KTLT SD +
Sbjct: 73 YMADAESDEVFAKLRLIPL--KDDEYVDHEYGDGEDSNGFESNSEKTPSFAKTLTQSDAN 130
Query: 120 THGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWS 179
GGFSV R A+ P LD + +PP Q + AKD+HG+ W+FRHI+RG PRRHLL +GWS
Sbjct: 131 NGGGFSVPRYCAETIFPRLDYNAEPPVQTILAKDVHGDVWKFRHIYRGTPRRHLLTTGWS 190
Query: 180 VFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQ-GNVP 218
FV+ K+LVAGD+ +F+R ENG+L VG+RRA R GN P
Sbjct: 191 NFVNQKKLVAGDSIVFMRAENGDLCVGIRRAKRGGIGNGP 230
Score = 196 (74.1 bits), Expect = 7.4e-69, Sum P(3) = 7.4e-69
Identities = 48/138 (34%), Positives = 67/138 (48%)
Query: 231 VLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPE 290
V+ A A+S G F V Y PR S SEF V +++ + GMRFKM FE E++
Sbjct: 276 VIEAATLAIS-GRPFEVVYYPRASTSEFCVKALDARAAMRIPWCSGMRFKMAFETEDSSR 334
Query: 291 -QRFTGTIVGIEDADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEXXXXXXXXXXX 349
F GT+ + +DP RW +S WR L+V WDE + +RV+ W +E
Sbjct: 335 ISWFMGTVSAVNVSDPIRWPNSPWRLLQVAWDEPDLLQNVKRVNPWLVELVSNVHPIPLT 394
Query: 350 XXXRPKRPRSNMLPSSPD 367
P++ LP PD
Sbjct: 395 SFSPPRKKMR--LPQHPD 410
Score = 50 (22.7 bits), Expect = 7.4e-69, Sum P(3) = 7.4e-69
Identities = 26/96 (27%), Positives = 42/96 (43%)
Query: 475 PFADAVPVRKSV-LDQEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNV 533
P P RK + L Q +N + + PS PS + S+ V +V ++G
Sbjct: 392 PLTSFSPPRKKMRLPQHPDYNNLINSIPV-PSFPSNPLIRSSPLSSVLD-NVPVGLQG-A 448
Query: 534 RYGGFGDYPMLNGNRVEHSHGNWLMPPLPPSNFENS 569
R+ Y L+ + + H + N PP PPS+ + S
Sbjct: 449 RHNAH-QYYGLSSSDLHHYYLNRPPPPPPPSSLQLS 483
Score = 38 (18.4 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 354 PKRPRSNMLPSSPDSSVL 371
P P + ++ SSP SSVL
Sbjct: 421 PSFPSNPLIRSSPLSSVL 438
>TAIR|locus:2057517 [details] [associations]
symbol:ARF10 "auxin response factor 10" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0035198 "miRNA binding" evidence=ISS] [GO:0007389 "pattern
specification process" evidence=IDA] [GO:0048829 "root cap
development" evidence=IGI;IMP] [GO:0051301 "cell division"
evidence=IGI] [GO:0009734 "auxin mediated signaling pathway"
evidence=IMP] [GO:0009738 "abscisic acid mediated signaling
pathway" evidence=IMP] [GO:0009743 "response to carbohydrate
stimulus" evidence=IMP] [GO:0010154 "fruit development"
evidence=IMP] [GO:0031540 "regulation of anthocyanin biosynthetic
process" evidence=IMP] [GO:0048366 "leaf development" evidence=IMP]
[GO:0048441 "petal development" evidence=IMP] [GO:0048442 "sepal
development" evidence=IMP] [GO:0048589 "developmental growth"
evidence=IMP] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009738
GO:GO:0009734 GO:GO:0051301 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0048829 GO:GO:0048589 GO:GO:0009743
GO:GO:0048441 GO:GO:0048442 GO:GO:0010154 GO:GO:0035198
GO:GO:0048366 GO:GO:0007389 EMBL:AF099735 EMBL:AC006283
EMBL:AF325073 EMBL:AF336919 EMBL:EU550097 EMBL:EU550098
EMBL:EU550099 EMBL:EU550100 EMBL:EU550101 EMBL:EU550102
EMBL:EU550103 EMBL:EU550104 EMBL:EU550105 EMBL:EU550106
EMBL:EU550107 EMBL:EU550108 EMBL:EU550109 EMBL:EU550110
EMBL:EU550111 EMBL:EU550112 EMBL:EU550113 EMBL:EU550114
EMBL:EU550115 EMBL:EU550116 EMBL:EU550117 EMBL:EU550118
EMBL:EU550119 EMBL:AK228534 IPI:IPI00530405 PIR:G84683
RefSeq:NP_180402.1 UniGene:At.13730 ProteinModelPortal:Q9SKN5
SMR:Q9SKN5 IntAct:Q9SKN5 STRING:Q9SKN5 PRIDE:Q9SKN5
EnsemblPlants:AT2G28350.1 GeneID:817382 KEGG:ath:AT2G28350
GeneFarm:3383 TAIR:At2g28350 eggNOG:NOG315592 InParanoid:Q9SKN5
OMA:ERESGRC PhylomeDB:Q9SKN5 ProtClustDB:CLSN2913131
ArrayExpress:Q9SKN5 Genevestigator:Q9SKN5 GermOnline:AT2G28350
GO:GO:0031540 Uniprot:Q9SKN5
Length = 693
Score = 492 (178.3 bits), Expect = 3.7e-68, Sum P(2) = 3.7e-68
Identities = 105/219 (47%), Positives = 135/219 (61%)
Query: 2 ALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRV 61
+L +LWHACAG +V +P V+YF QGH E A D P +P ILCRV
Sbjct: 6 SLDPQLWHACAGSMVQIPSLNSTVFYFAQGHTEHAHAPP----DFHAP--RVPPLILCRV 59
Query: 62 INVQLKAEPDTDEVFAQVTLLPESNQD---EN-AV----EKEXXXXXXXRFHVHSFCKTL 113
++V+ A+ +TDEVFA++TLLP D EN AV + SF KTL
Sbjct: 60 VSVKFLADAETDEVFAKITLLPLPGNDLDLENDAVLGLTPPSSDGNGNGKEKPASFAKTL 119
Query: 114 TASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHL 173
T SD + GGFSV R A+ P LD S +PP Q + AKD+HG W+FRHI+RG PRRHL
Sbjct: 120 TQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDIHGETWKFRHIYRGTPRRHL 179
Query: 174 LQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMR 212
L +GWS FV+ K+L+AGD+ +FLR E+G+L VG+RRA R
Sbjct: 180 LTTGWSTFVNQKKLIAGDSIVFLRSESGDLCVGIRRAKR 218
Score = 218 (81.8 bits), Expect = 3.7e-68, Sum P(2) = 3.7e-68
Identities = 48/145 (33%), Positives = 72/145 (49%)
Query: 195 FLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTS 254
FLR + M++ GN + ++ + + +A A + G F V Y PR S
Sbjct: 237 FLRDDESTTTTSKLMMMKRNGNNDGNAAATGRVRVEAVAEAVARAACGQAFEVVYYPRAS 296
Query: 255 PSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPE-QRFTGTIVGIEDADPQRWRDSKW 313
EF V +++ + GMRFKM FE E++ F GT+ ++ ADP RW +S W
Sbjct: 297 TPEFCVKAADVRSAMRIRWCSGMRFKMAFETEDSSRISWFMGTVSAVQVADPIRWPNSPW 356
Query: 314 RCLKVRWDETSTIPRPERVSLWKIE 338
R L+V WDE + +RVS W +E
Sbjct: 357 RLLQVAWDEPDLLQNVKRVSPWLVE 381
>TAIR|locus:2037169 [details] [associations]
symbol:ARF23 "auxin response factor 23" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0009734 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
HOGENOM:HOG000241141 EMBL:AC022314 IPI:IPI00526589 PIR:E96503
RefSeq:NP_175062.1 UniGene:At.52022 ProteinModelPortal:Q9LP07
SMR:Q9LP07 EnsemblPlants:AT1G43950.1 GeneID:840994
KEGG:ath:AT1G43950 GeneFarm:3427 TAIR:At1g43950 OMA:PTENENQ
PhylomeDB:Q9LP07 Genevestigator:Q9LP07 GermOnline:AT1G43950
Uniprot:Q9LP07
Length = 222
Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
Identities = 111/206 (53%), Positives = 141/206 (68%)
Query: 3 LYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVI 62
+Y +LW CAGPL +P+ GE+VYYFPQGHIE VEAST + ++ P DLPSK+ CRVI
Sbjct: 24 MYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPNCDLPSKLQCRVI 83
Query: 63 NVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHG 122
+ LK E ++DE + ++TL+P++ Q E E R V+SF K LTASDTS G
Sbjct: 84 AIHLKVENNSDETYVEITLMPDTTQVVIPTENENQF----RPIVNSFTKVLTASDTSAQG 139
Query: 123 GFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFV 182
FSV +HA ECLPPLDMS+ P QEL A DLHGN+WRF+H +R PR +GW+ F
Sbjct: 140 EFSVPCKHAIECLPPLDMSQPIPAQELIAIDLHGNQWRFKHSYR-VPRGDT--TGWNAFT 196
Query: 183 SSKRLVAGDAFIFLRGENGELRVGVR 208
+SK+LV GD +F RGE GELRVG+R
Sbjct: 197 TSKKLVVGDVIVFARGETGELRVGIR 222
>TAIR|locus:2029436 [details] [associations]
symbol:ARF17 "auxin response factor 17" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0009653 "anatomical structure morphogenesis"
evidence=IMP] [GO:0009734 "auxin mediated signaling pathway"
evidence=TAS] [GO:0048830 "adventitious root development"
evidence=IMP] [GO:0009555 "pollen development" evidence=IMP]
InterPro:IPR003340 InterPro:IPR010525 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0009555
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0048830 GO:GO:0009653
EMBL:AC009243 EMBL:AC012193 EMBL:AY056184 EMBL:BT002749
EMBL:EU550144 EMBL:EU550145 EMBL:EU550146 EMBL:EU550147
EMBL:EU550148 EMBL:EU550149 EMBL:EU550150 EMBL:EU550151
EMBL:EU550152 EMBL:EU550153 EMBL:EU550154 EMBL:EU550155
EMBL:EU550156 EMBL:EU550157 EMBL:EU550158 EMBL:EU550159
EMBL:EU550160 EMBL:EU550161 EMBL:EU550162 EMBL:EU550163
EMBL:EU550164 EMBL:EU550165 EMBL:EU550166 EMBL:EU550167
IPI:IPI00522722 PIR:D96808 RefSeq:NP_565161.1 UniGene:At.26363
ProteinModelPortal:Q84WU6 SMR:Q84WU6 IntAct:Q84WU6 STRING:Q84WU6
PRIDE:Q84WU6 EnsemblPlants:AT1G77850.1 GeneID:844120
KEGG:ath:AT1G77850 GeneFarm:3413 TAIR:At1g77850 eggNOG:NOG325741
OMA:IWRACAG PhylomeDB:Q84WU6 ProtClustDB:CLSN2689276
Genevestigator:Q84WU6 GermOnline:AT1G77850 Uniprot:Q84WU6
Length = 585
Score = 406 (148.0 bits), Expect = 1.5e-46, Sum P(2) = 1.5e-46
Identities = 89/207 (42%), Positives = 115/207 (55%)
Query: 7 LWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQL 66
+W ACAG V +P RVYYFPQGH+E + + PV P C + ++QL
Sbjct: 20 IWRACAGASVQIPVLHSRVYYFPQGHVEHCCPLLSTLPSSTSPV---P----CIITSIQL 72
Query: 67 KAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFH----VHSFCKTLTASDTSTHG 122
A+P TDEVFA + L P + Q V +F K LT SD + G
Sbjct: 73 LADPVTDEVFAHLILQPMTQQQFTPTNYSRFGRFDGDVDDNNKVTTFAKILTPSDANNGG 132
Query: 123 GFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFV 182
GFSV R AD P L+ PP Q+L D+HG W FRHI+RG PRRHLL +GWS FV
Sbjct: 133 GFSVPRFCADSVFPLLNFQIDPPVQKLYVTDIHGAVWDFRHIYRGTPRRHLLTTGWSKFV 192
Query: 183 SSKRLVAGDAFIFLRGENGELRVGVRR 209
+SK+L+AGD+ +F+R E+ +GVRR
Sbjct: 193 NSKKLIAGDSVVFMRKSADEMFIGVRR 219
Score = 137 (53.3 bits), Expect = 1.5e-46, Sum P(2) = 1.5e-46
Identities = 46/169 (27%), Positives = 70/169 (41%)
Query: 235 AWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFT 294
A + S G F V + P SEF+V + S+ ++ G R KM E E++ +
Sbjct: 274 AINRASQGLPFEVVFYPAAGWSEFVVRAEDVESSMSMYWTPGTRVKMAMETEDSSRITWF 333
Query: 295 GTIVGIEDADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEXXXXXXXXXXXX--XX 352
IV + WR S W+ L++ WDE + +RV+ W++E
Sbjct: 334 QGIVSSTYQETGPWRGSPWKQLQITWDEPEILQNVKRVNPWQVEIAAHATQLHTPFPPAK 393
Query: 353 RPKRPR-SNMLPSSPDSSVL-TREG-SSKLNVDPS-SATGFSRVLQGQE 397
R K P+ S D +L + G SS DPS S +S G +
Sbjct: 394 RLKYPQPGGGFLSGDDGEILYPQSGLSSAAAPDPSPSMFSYSTFPAGMQ 442
>TAIR|locus:2041404 [details] [associations]
symbol:NGA1 "NGATHA1" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009908
"flower development" evidence=IMP] [GO:0048366 "leaf development"
evidence=IMP] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC004411
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
GO:GO:0009908 GO:GO:0048366 EMBL:AC005310 HSSP:Q9ZWM9 EMBL:AK118045
EMBL:BT008534 IPI:IPI00537675 PIR:T02200 RefSeq:NP_566089.1
UniGene:At.36441 ProteinModelPortal:O82799 SMR:O82799 IntAct:O82799
STRING:O82799 EnsemblPlants:AT2G46870.1 GeneID:819300
KEGG:ath:AT2G46870 TAIR:At2g46870 eggNOG:NOG237610
HOGENOM:HOG000239355 InParanoid:O82799 OMA:MECGESG PhylomeDB:O82799
ProtClustDB:CLSN2682823 Genevestigator:O82799 Uniprot:O82799
Length = 310
Score = 145 (56.1 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 39/131 (29%), Positives = 63/131 (48%)
Query: 75 VFAQVTLLPESNQDENA--VEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHAD 132
+ ++L + +++E E+E R H+ F K +T SD + ++HA+
Sbjct: 1 MMTDLSLTRDEDEEEAKPLAEEEGAREVADREHM--FDKVVTPSDVGKLNRLVIPKQHAE 58
Query: 133 ECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDA 192
P LD S L +DL G WRFR+ + + +++ GWS FV K+L AGD
Sbjct: 59 RFFP-LDSSSNEKGLLLNFEDLTGKSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDI 117
Query: 193 FIFLR--GENG 201
F R G++G
Sbjct: 118 VSFQRCVGDSG 128
>TAIR|locus:2200950 [details] [associations]
symbol:NGA3 "NGATHA3" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009908
"flower development" evidence=IMP] [GO:0048366 "leaf development"
evidence=IMP] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0009908 GO:GO:0048366
HSSP:Q9ZWM9 EMBL:AC007323 eggNOG:NOG237610 HOGENOM:HOG000239355
EMBL:BX814729 IPI:IPI00536920 PIR:B86141 RefSeq:NP_171611.1
UniGene:At.49492 ProteinModelPortal:Q9MAN1 SMR:Q9MAN1 STRING:Q9MAN1
PRIDE:Q9MAN1 EnsemblPlants:AT1G01030.1 GeneID:839321
KEGG:ath:AT1G01030 TAIR:At1g01030 InParanoid:Q9MAN1 OMA:RNIVGSE
PhylomeDB:Q9MAN1 ProtClustDB:CLSN2912766 Genevestigator:Q9MAN1
Uniprot:Q9MAN1
Length = 358
Score = 143 (55.4 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 33/96 (34%), Positives = 47/96 (48%)
Query: 107 HSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFR 166
H F K +T SD + ++HA+ P LD S L +D +G WRFR+ +
Sbjct: 54 HMFDKVVTPSDVGKLNRLVIPKQHAERYFP-LDSSNNQNGTLLNFQDRNGKMWRFRYSYW 112
Query: 167 GQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGE 202
+ +++ GWS FV K+L AGD F RG E
Sbjct: 113 NSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGIGDE 148
>TAIR|locus:2079537 [details] [associations]
symbol:NGA2 "NGATHA2" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009908
"flower development" evidence=IMP] [GO:0048366 "leaf development"
evidence=IMP] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0009908 GO:GO:0048366
EMBL:AL138642 HSSP:Q9ZWM9 HOGENOM:HOG000239355
ProtClustDB:CLSN2682823 EMBL:AK117646 EMBL:BT025866 EMBL:AY085197
IPI:IPI00523321 PIR:T47989 RefSeq:NP_191756.1 UniGene:At.34201
ProteinModelPortal:Q9M268 SMR:Q9M268 EnsemblPlants:AT3G61970.1
GeneID:825370 KEGG:ath:AT3G61970 TAIR:At3g61970 eggNOG:NOG273145
InParanoid:Q9M268 OMA:SSSMERE PhylomeDB:Q9M268
Genevestigator:Q9M268 Uniprot:Q9M268
Length = 299
Score = 138 (53.6 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 36/115 (31%), Positives = 53/115 (46%)
Query: 86 NQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 145
NQ++ EK H F K +T SD + ++HA+ P LD S
Sbjct: 2 NQEDK--EKPIEEASSSMEREHMFDKVVTPSDVGKLNRLVIPKQHAERYFP-LDNSTTND 58
Query: 146 TQE---LAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 197
+ + L +D GN WRFR+ + + +++ GWS FV K+L AGD F R
Sbjct: 59 SNKGLLLNFEDRSGNSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQR 113
>TAIR|locus:2117007 [details] [associations]
symbol:NGA4 "NGATHA4" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009908
"flower development" evidence=IMP] [GO:0048366 "leaf development"
evidence=IMP] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0009908 GO:GO:0048366
EMBL:AF096370 EMBL:AL161492 HSSP:Q9ZWM9 HOGENOM:HOG000239355
EMBL:FJ873734 EMBL:BT029520 EMBL:AB493670 IPI:IPI00543194
PIR:T01944 RefSeq:NP_192059.4 UniGene:At.34418
ProteinModelPortal:O82595 SMR:O82595 STRING:O82595 PRIDE:O82595
EnsemblPlants:AT4G01500.1 GeneID:826750 KEGG:ath:AT4G01500
TAIR:At4g01500 eggNOG:NOG287578 InParanoid:O82595 OMA:YSSERRE
Genevestigator:O82595 Uniprot:O82595
Length = 333
Score = 138 (53.6 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 33/92 (35%), Positives = 46/92 (50%)
Query: 107 HSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFR 166
H F K LT SD + ++HA+ P D Q T L +D +G WRFR+ +
Sbjct: 34 HMFDKVLTPSDVGKLNRLVIPKQHAENFFPLED--NQNGTV-LDFQDKNGKMWRFRYSYW 90
Query: 167 GQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRG 198
+ +++ GWS FV K+L AGD F RG
Sbjct: 91 NSSQSYVMTKGWSRFVKEKKLFAGDTVSFYRG 122
Score = 40 (19.1 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 527 YQVRGNVR-YGGFGDYPMLNGNRVEHSHGNWLMPPLPPSNFENSAHSRELMPKSAMV 582
YQ + R Y G+G ++NGN V + G+ PL + N S L+ S V
Sbjct: 189 YQNQFQEREYLGYGYGRVVNGNGVRYYAGS----PLDQHHQWNLGRSEPLVYDSVPV 241
>TAIR|locus:2164215 [details] [associations]
symbol:DPA4 "DEVELOPMENT-RELATED PcG TARGET IN THE APEX
4" species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0009062 "fatty acid catabolic
process" evidence=RCA] [GO:0010073 "meristem maintenance"
evidence=IMP] [GO:0010358 "leaf shaping" evidence=IGI] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IMP]
[GO:0048366 "leaf development" evidence=IGI] InterPro:IPR003340
Pfam:PF02362 PROSITE:PS50863 SMART:SM01019 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045892 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0010073 EMBL:AB006700 GO:GO:0010358
HSSP:Q9ZWM9 HOGENOM:HOG000239355 IPI:IPI00517655 IPI:IPI00891280
RefSeq:NP_001119177.1 RefSeq:NP_196243.2 UniGene:At.54745
ProteinModelPortal:Q9FNI3 SMR:Q9FNI3 EnsemblPlants:AT5G06250.2
GeneID:830512 KEGG:ath:AT5G06250 TAIR:At5g06250 eggNOG:NOG256843
InParanoid:Q9FNI3 OMA:LECQMDE PhylomeDB:Q9FNI3
ProtClustDB:CLSN2702250 Genevestigator:Q9FNI3 Uniprot:Q9FNI3
Length = 282
Score = 134 (52.2 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 51/195 (26%), Positives = 82/195 (42%)
Query: 80 TLLPESNQDENAVEKEXXXXXXXRFH---VHS-FCKTLTASDTSTHGGFSVLRRHADECL 135
TLL + Q + + H S F K+LT SD + ++HA++
Sbjct: 13 TLLWQQQQHRHTTDTSETTTTATWLHDDLKESLFEKSLTPSDVGKLNRLVIPKQHAEKYF 72
Query: 136 P---------PLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKR 186
P D S L+ +D G WRFR+ + + ++L GWS FV K+
Sbjct: 73 PLNAVLVSSAAADTSSSEKGMLLSFEDESGKSWRFRYSYWNSSQSYVLTKGWSRFVKDKQ 132
Query: 187 LVAGDAFIFLR--GENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVL-ATAWHAVSTGT 243
L GD F R ++ L +G RR R QG+ S ++ +++ + A ++H +
Sbjct: 133 LDPGDVVFFQRHRSDSRRLFIGWRR--RGQGSSSSVAATNSAVNTSSMGALSYHQIHA-- 188
Query: 244 MFTVYYKPRTSPSEF 258
T Y S SE+
Sbjct: 189 --TSNYSNPPSHSEY 201
>TAIR|locus:2039165 [details] [associations]
symbol:ABS2 "ABNORMAL SHOOT 2" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0080167 "response to karrikin" evidence=IEP] [GO:0009062 "fatty
acid catabolic process" evidence=RCA] InterPro:IPR003340
Pfam:PF02362 PROSITE:PS50863 SMART:SM01019 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0080167 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 EMBL:AC007017 EMBL:AC007135
HSSP:Q9ZWM9 HOGENOM:HOG000239355 EMBL:AK117587 EMBL:AJ441075
IPI:IPI00522172 IPI:IPI00531123 PIR:F84776 RefSeq:NP_181152.2
RefSeq:NP_850260.1 UniGene:At.23308 ProteinModelPortal:Q8GYJ2
SMR:Q8GYJ2 PaxDb:Q8GYJ2 EnsemblPlants:AT2G36080.1 GeneID:818181
KEGG:ath:AT2G36080 TAIR:At2g36080 eggNOG:NOG253490
InParanoid:Q8GYJ2 OMA:AQAVESQ PhylomeDB:Q8GYJ2
ProtClustDB:CLSN2680069 Genevestigator:Q8GYJ2 Uniprot:Q8GYJ2
Length = 244
Score = 126 (49.4 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 33/106 (31%), Positives = 50/106 (47%)
Query: 109 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQE---LAAKDLHGNEWRFRHIF 165
F K LT SD + ++HA+ P L + ++ L +D G WRFR+ +
Sbjct: 38 FEKPLTPSDVGKLNRLVIPKQHAERYFP-LAAAAADAVEKGLLLCFEDEEGKPWRFRYSY 96
Query: 166 RGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR--GENGELRVGVRR 209
+ ++L GWS +V K L AGD +F R + G +G RR
Sbjct: 97 WNSSQSYVLTKGWSRYVKEKHLDAGDVVLFHRHRSDGGRFFIGWRR 142
Score = 39 (18.8 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 580 AMVQDQEAGKSKDCKLFGI 598
A + + G SK +LFG+
Sbjct: 170 AQAVESQRGNSKTLRLFGV 188
>TAIR|locus:2205319 [details] [associations]
symbol:RAV1 "related to ABI3/VP1 1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;ISS;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0009741 "response to
brassinosteroid stimulus" evidence=IEP] [GO:0009910 "negative
regulation of flower development" evidence=IMP] [GO:0048366 "leaf
development" evidence=IMP] [GO:0048527 "lateral root development"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0006612 "protein targeting to
membrane" evidence=RCA] [GO:0009963 "positive regulation of
flavonoid biosynthetic process" evidence=RCA] [GO:0010363
"regulation of plant-type hypersensitive response" evidence=RCA]
InterPro:IPR001471 InterPro:IPR003340 InterPro:IPR016177
Pfam:PF00847 Pfam:PF02362 PROSITE:PS50863 PROSITE:PS51032
SMART:SM00380 SMART:SM01019 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005634 GO:GO:0045892 EMBL:AC011810 GO:GO:0009873
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0048527
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
Gene3D:3.30.730.10 SUPFAM:SSF54171 GO:GO:0009910 GO:GO:0048366
GO:GO:0009741 EMBL:AB013886 EMBL:AY063855 EMBL:AY091291
IPI:IPI00544013 PIR:T51329 RefSeq:NP_172784.1 UniGene:At.20558
PDB:1WID PDBsum:1WID ProteinModelPortal:Q9ZWM9 SMR:Q9ZWM9
STRING:Q9ZWM9 EnsemblPlants:AT1G13260.1 GeneID:837886
KEGG:ath:AT1G13260 TAIR:At1g13260 eggNOG:NOG266118
HOGENOM:HOG000237484 InParanoid:Q9ZWM9 KO:K09287 OMA:ICETPAI
PhylomeDB:Q9ZWM9 ProtClustDB:CLSN2682511 EvolutionaryTrace:Q9ZWM9
Genevestigator:Q9ZWM9 GermOnline:AT1G13260 Uniprot:Q9ZWM9
Length = 344
Score = 126 (49.4 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 31/100 (31%), Positives = 49/100 (49%)
Query: 109 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQ 168
F K +T SD + + HA++ P + L +D++G WRFR+ +
Sbjct: 188 FEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNS 247
Query: 169 PRRHLLQSGWSVFVSSKRLVAGDAFIFLR--GENGELRVG 206
+ ++L GWS FV K L AGD F R G++ +L +G
Sbjct: 248 SQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIG 287
>TAIR|locus:2085969 [details] [associations]
symbol:EDF3 "ethylene response DNA binding factor 3"
species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0009691 "cytokinin biosynthetic
process" evidence=RCA] InterPro:IPR001471 InterPro:IPR003340
InterPro:IPR016177 Pfam:PF00847 Pfam:PF02362 PROSITE:PS50863
PROSITE:PS51032 SMART:SM00380 SMART:SM01019 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009873 EMBL:AB028607
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 Gene3D:3.30.730.10
SUPFAM:SSF54171 HSSP:Q9ZWM9 eggNOG:NOG266118 HOGENOM:HOG000237484
KO:K09287 ProtClustDB:CLSN2682511 EMBL:AJ441073 EMBL:AK229415
EMBL:AY087951 IPI:IPI00523797 RefSeq:NP_189201.1 UniGene:At.37331
ProteinModelPortal:Q9LS06 SMR:Q9LS06 EnsemblPlants:AT3G25730.1
GeneID:822164 KEGG:ath:AT3G25730 TAIR:At3g25730 InParanoid:Q9LS06
OMA:NAHSKSE Genevestigator:Q9LS06 Uniprot:Q9LS06
Length = 333
Score = 124 (48.7 bits), Expect = 0.00013, P = 0.00013
Identities = 31/94 (32%), Positives = 46/94 (48%)
Query: 109 FCKTLTASDTSTHGGFSVLRRHADECLP-PLDMSR-QPPTQELAAKDLHGNEWRFRHIFR 166
F KT+T SD + + A++ P PL + L +D++G WRFR+ +
Sbjct: 183 FEKTVTPSDVGKLNRLVIPKHQAEKHFPLPLGNNNVSVKGMLLNFEDVNGKVWRFRYSYW 242
Query: 167 GQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGEN 200
+ ++L GWS FV KRL AGD F R +
Sbjct: 243 NSSQSYVLTKGWSRFVKEKRLCAGDLISFKRSND 276
>TAIR|locus:2031185 [details] [associations]
symbol:TEM1 "TEMPRANILLO 1" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA;NAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0009873 "ethylene mediated signaling pathway" evidence=NAS]
[GO:0048573 "photoperiodism, flowering" evidence=IMP] [GO:0030003
"cellular cation homeostasis" evidence=RCA] [GO:0070838 "divalent
metal ion transport" evidence=RCA] InterPro:IPR001471
InterPro:IPR003340 InterPro:IPR016177 Pfam:PF00847 Pfam:PF02362
PROSITE:PS50863 PROSITE:PS51032 SMART:SM00380 SMART:SM01019
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 EMBL:AC079281
GO:GO:0009873 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
Gene3D:3.30.730.10 SUPFAM:SSF54171 GO:GO:0048573 HSSP:Q9ZWM9
HOGENOM:HOG000237484 KO:K09287 ProtClustDB:CLSN2682511
EMBL:AY091069 EMBL:AY122941 IPI:IPI00518546 PIR:A86386
RefSeq:NP_173927.1 UniGene:At.17318 ProteinModelPortal:Q9C6M5
SMR:Q9C6M5 DIP:DIP-59693N PaxDb:Q9C6M5 PRIDE:Q9C6M5
EnsemblPlants:AT1G25560.1 GeneID:839143 KEGG:ath:AT1G25560
TAIR:At1g25560 eggNOG:NOG250438 InParanoid:Q9C6M5 OMA:NDVAVEC
PhylomeDB:Q9C6M5 Genevestigator:Q9C6M5 Uniprot:Q9C6M5
Length = 361
Score = 120 (47.3 bits), Expect = 0.00041, P = 0.00041
Identities = 34/111 (30%), Positives = 53/111 (47%)
Query: 109 FCKTLTASDTSTHGGFSVLRRHADECLP-PL---DMSRQP-PTQELAA--KDLHGNEWRF 161
F KT+T SD + ++HA++ P P M P PT+ + +D G WRF
Sbjct: 195 FEKTVTPSDVGKLNRLVIPKQHAEKHFPLPAMTTAMGMNPSPTKGVLINLEDRTGKVWRF 254
Query: 162 RHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMR 212
R+ + + ++L GWS FV K L AGD F R + ++ + +R
Sbjct: 255 RYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVCFERSTGPDRQLYIHWKVR 305
>TAIR|locus:2080782 [details] [associations]
symbol:AT3G11580 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009062
"fatty acid catabolic process" evidence=RCA] InterPro:IPR003340
Pfam:PF02362 PROSITE:PS50863 SMART:SM01019 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AC008153 HSSP:Q9ZWM9 HOGENOM:HOG000239355
EMBL:AJ441076 EMBL:AK175281 EMBL:BT029371 IPI:IPI00539345
IPI:IPI00547561 RefSeq:NP_187765.2 RefSeq:NP_850559.1
UniGene:At.39724 ProteinModelPortal:Q8RYD3 SMR:Q8RYD3
EnsemblPlants:AT3G11580.1 GeneID:820331 KEGG:ath:AT3G11580
TAIR:At3g11580 eggNOG:NOG285931 InParanoid:Q8RYD3 OMA:CHGDAVE
PhylomeDB:Q8RYD3 ProtClustDB:CLSN2918062 Genevestigator:Q8RYD3
Uniprot:Q8RYD3
Length = 267
Score = 114 (45.2 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 41/146 (28%), Positives = 66/146 (45%)
Query: 109 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQP------PTQE----LAAKDLHGNE 158
F K+LT SD + ++HA++ P + + T E L+ +D G
Sbjct: 29 FEKSLTPSDVGKLNRLVIPKQHAEKYFPLNNNNNNGGSGDDVATTEKGMLLSFEDESGKC 88
Query: 159 WRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRG--ENGELRVGVRRAMRQQGN 216
W+FR+ + + ++L GWS +V K L AGD F R + L +G RR +
Sbjct: 89 WKFRYSYWNSSQSYVLTKGWSRYVKDKHLDAGDVVFFQRHRFDLHRLFIGWRRRGEASSS 148
Query: 217 VPSSVISSHSMHLGVLATA-WHAVST 241
SV+S ++ V TA W ++T
Sbjct: 149 PAVSVVSQEAL---VNTTAYWSGLTT 171
Score = 43 (20.2 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 563 PSNFENSAHSRELMPKSAMVQDQEAGKSKDCKLFGIPL--FSNHVMPEP 609
P+ + +H ++ + + AG S+ +LFG+ L + V P P
Sbjct: 183 PNIHQEYSHYGAVVDHAQSIPPVVAGSSRTVRLFGVNLECHGDAVEPPP 231
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.132 0.403 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 688 655 0.00096 120 3 11 22 0.43 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 31
No. of states in DFA: 630 (67 KB)
Total size of DFA: 387 KB (2188 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 57.79u 0.10s 57.89t Elapsed: 00:00:02
Total cpu time: 57.80u 0.10s 57.90t Elapsed: 00:00:02
Start: Thu May 9 14:10:55 2013 End: Thu May 9 14:10:57 2013