Query 005618
Match_columns 688
No_of_seqs 260 out of 593
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 02:36:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005618.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005618hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 9.9E-29 3.4E-33 228.3 12.6 113 102-214 7-121 (130)
2 4i1k_A B3 domain-containing tr 99.7 2.2E-17 7.6E-22 155.7 9.9 98 105-212 45-144 (146)
3 1yel_A AT1G16640; CESG, protei 99.5 3.6E-14 1.2E-18 125.7 8.5 93 107-210 9-101 (104)
4 1na6_A Ecorii, restriction end 93.7 0.094 3.2E-06 56.9 6.9 93 105-198 17-123 (404)
5 3cgm_A SLYD, peptidyl-prolyl C 60.9 40 0.0014 31.7 9.3 100 187-302 3-110 (158)
6 2k8i_A SLYD, peptidyl-prolyl C 58.0 41 0.0014 32.1 9.0 102 187-302 3-114 (171)
7 2kfw_A FKBP-type peptidyl-prol 43.9 31 0.001 33.8 5.7 102 187-302 3-114 (196)
8 4dt4_A FKBP-type 16 kDa peptid 43.2 75 0.0026 30.4 8.2 105 186-302 24-138 (169)
9 3p8d_A Medulloblastoma antigen 39.7 49 0.0017 27.6 5.4 54 269-340 3-56 (67)
10 2kr7_A FKBP-type peptidyl-prol 38.4 1.5E+02 0.005 27.4 9.2 105 184-302 4-119 (151)
11 1mhn_A SurviVal motor neuron p 31.9 49 0.0017 26.0 4.1 41 271-323 2-42 (59)
12 2jng_A Cullin-7, CUL-7; P53 bi 31.5 50 0.0017 29.9 4.5 71 261-344 10-80 (105)
13 3pr9_A FKBP-type peptidyl-prol 30.3 2.4E+02 0.0083 26.4 9.3 105 187-302 2-123 (157)
14 4a4f_A SurviVal of motor neuro 29.7 50 0.0017 26.5 3.9 44 269-324 5-48 (64)
15 3o27_A Putative uncharacterize 29.5 30 0.001 29.1 2.5 33 180-212 32-65 (68)
16 3qii_A PHD finger protein 20; 29.5 80 0.0027 27.5 5.3 55 269-341 18-72 (85)
17 3s6w_A Tudor domain-containing 29.5 49 0.0017 25.4 3.7 28 272-302 1-28 (54)
18 2e63_A KIAA1787 protein; struc 26.1 39 0.0013 32.4 3.1 24 185-208 116-139 (170)
19 1g5v_A SurviVal motor neuron p 23.5 79 0.0027 27.4 4.2 43 270-324 8-50 (88)
20 2equ_A PHD finger protein 20-l 23.2 69 0.0023 26.9 3.7 40 270-323 7-46 (74)
21 3pie_A 5'->3' exoribonuclease 22.7 1.1E+02 0.0039 37.4 6.8 48 270-325 1063-1110(1155)
22 2yue_A Protein neuralized; str 22.2 76 0.0026 30.3 4.3 21 188-208 107-127 (168)
23 3e0e_A Replication protein A; 21.0 2.1E+02 0.0072 24.4 6.5 62 105-198 13-74 (97)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.96 E-value=9.9e-29 Score=228.28 Aligned_cols=113 Identities=27% Similarity=0.434 Sum_probs=103.6
Q ss_pred CCCceeeEEEecccccCCCCCceEEcccchhccCCCCCCCCCCCccEEEEEeCCCCeEEEEEEEeCCCCceeeccCceee
Q 005618 102 PRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVF 181 (688)
Q Consensus 102 ~~~~~~~F~K~LT~SDV~~~grfsVPk~~Ae~~FPpLd~~~~~p~q~L~~kDl~G~~W~FR~~yRg~prrhlLTtGWs~F 181 (688)
.++..++|+|+||+|||+++++|+||+++|+.|||.++..+..++++|.++|.+|++|+|||+||+++++|+|++||+.|
T Consensus 7 ~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~F 86 (130)
T 1wid_A 7 GRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRF 86 (130)
T ss_dssp -CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHH
T ss_pred CCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHHH
Confidence 45567899999999999999999999999999999999766667899999999999999999999999999999999999
Q ss_pred eccCCCCCCCEEEEEEcCC--CcEEEEEEEecccC
Q 005618 182 VSSKRLVAGDAFIFLRGEN--GELRVGVRRAMRQQ 214 (688)
Q Consensus 182 Vk~KkL~aGD~VvF~R~~n--GeL~VGIRRa~r~~ 214 (688)
|++|+|++||+|+|++.++ +.|+|+|||+.+..
T Consensus 87 V~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 87 VKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp HHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred HHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence 9999999999999999864 57999999988654
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.71 E-value=2.2e-17 Score=155.68 Aligned_cols=98 Identities=18% Similarity=0.231 Sum_probs=86.4
Q ss_pred ceeeEEEecccccCCCCCceEEcccchhccCCCCCCCCCCCccEEEEEeCCCCeEEEEEEEeCCCCceeeccCceeeecc
Q 005618 105 HVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSS 184 (688)
Q Consensus 105 ~~~~F~K~LT~SDV~~~grfsVPk~~Ae~~FPpLd~~~~~p~q~L~~kDl~G~~W~FR~~yRg~prrhlLTtGWs~FVk~ 184 (688)
..++|.|+||+||+.++..|.||+.+++.+||..+ ..+.++|. |+.|.|+|+|++. ++.|++||..||++
T Consensus 45 ~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~d 114 (146)
T 4i1k_A 45 TNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTLE 114 (146)
T ss_dssp SSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHHH
T ss_pred CCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCC-------eEEEEEEC-CcEEEEEEEEeCC--cEEECCchHHHHHH
Confidence 44699999999999887789999999999999764 56788887 6999999999984 68999999999999
Q ss_pred CCCCCCCEEEEEEcCCC--cEEEEEEEecc
Q 005618 185 KRLVAGDAFIFLRGENG--ELRVGVRRAMR 212 (688)
Q Consensus 185 KkL~aGD~VvF~R~~nG--eL~VGIRRa~r 212 (688)
++|++||+|+|...++. .+.|.|.|+..
T Consensus 115 n~L~~GD~cvFeli~~~~~~f~V~IfR~~e 144 (146)
T 4i1k_A 115 NNLGEGDVCVFELLRTRDFVLKVTAFRVNE 144 (146)
T ss_dssp TTCCTTCEEEEEECSSSSCEEEEEEECCC-
T ss_pred cCCCCCCEEEEEEecCCceEEEEEEEeccC
Confidence 99999999999998765 68999998753
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.50 E-value=3.6e-14 Score=125.66 Aligned_cols=93 Identities=19% Similarity=0.363 Sum_probs=81.5
Q ss_pred eeEEEecccccCCCCCceEEcccchhccCCCCCCCCCCCccEEEEEeCCCCeEEEEEEEeCCCCceeeccCceeeeccCC
Q 005618 107 HSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKR 186 (688)
Q Consensus 107 ~~F~K~LT~SDV~~~grfsVPk~~Ae~~FPpLd~~~~~p~q~L~~kDl~G~~W~FR~~yRg~prrhlLTtGWs~FVk~Kk 186 (688)
+.|.|+|+++|. ..+|.||+++++.+.+.+ ...+.++|..|++|++++.+++ ++..|+.||..||++++
T Consensus 9 p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~-------~~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~~~ 77 (104)
T 1yel_A 9 VQFMKPFISEKS--SKSLEIPLGFNEYFPAPF-------PITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKDNN 77 (104)
T ss_dssp EEEEEECCHHHH--TTCEECCHHHHTTCCCCC-------CSEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHHHT
T ss_pred CCEEEEECCCCc--cceEECCHHHHHhcCccC-------CCEEEEECCCCCEEEEEEEEEC--CcEEEccChHHHHHHcC
Confidence 589999999994 448999999998865543 2478899999999999999875 46899999999999999
Q ss_pred CCCCCEEEEEEcCCCcEEEEEEEe
Q 005618 187 LVAGDAFIFLRGENGELRVGVRRA 210 (688)
Q Consensus 187 L~aGD~VvF~R~~nGeL~VGIRRa 210 (688)
|++||.|+|...++..+.|-|-|.
T Consensus 78 L~~GD~lvF~~~~~~~f~V~If~~ 101 (104)
T 1yel_A 78 LEDGKYLQFIYDRDRTFYVIIYGH 101 (104)
T ss_dssp CCTTCEEEEEECSSSEEEEEEECS
T ss_pred CCCCCEEEEEEcCCCeEEEEEECC
Confidence 999999999999999999999764
No 4
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=93.73 E-value=0.094 Score=56.88 Aligned_cols=93 Identities=15% Similarity=0.208 Sum_probs=66.7
Q ss_pred ceeeEEEecccccCCCC----CceEEcccchhccCCCCC-CCCCCCccEEEEE--eCCCCeEEEEEEEeC------CCCc
Q 005618 105 HVHSFCKTLTASDTSTH----GGFSVLRRHADECLPPLD-MSRQPPTQELAAK--DLHGNEWRFRHIFRG------QPRR 171 (688)
Q Consensus 105 ~~~~F~K~LT~SDV~~~----grfsVPk~~Ae~~FPpLd-~~~~~p~q~L~~k--Dl~G~~W~FR~~yRg------~prr 171 (688)
....|+|.|++.|++.. .+|.+|+..+..+||.|+ .....+.+.+.+. |...-++.++.+|.+ +...
T Consensus 17 ~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnE 96 (404)
T 1na6_A 17 NYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNE 96 (404)
T ss_dssp SEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCE
T ss_pred cchheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCc
Confidence 45789999999999886 479999988999999998 3344565666543 444445599999997 3335
Q ss_pred eeeccCce-eeeccCCCCCCCEEEEEEc
Q 005618 172 HLLQSGWS-VFVSSKRLVAGDAFIFLRG 198 (688)
Q Consensus 172 hlLTtGWs-~FVk~KkL~aGD~VvF~R~ 198 (688)
|.||. |. .+.-.....+||.++|-+.
T Consensus 97 yRLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 97 KRITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred eEEee-cCCCCcccccCCCCCEEEEEEe
Confidence 77862 32 2334477789999988753
No 5
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=60.88 E-value=40 Score=31.71 Aligned_cols=100 Identities=15% Similarity=0.147 Sum_probs=62.3
Q ss_pred CCCCCEEEEE-Ec-CCCcEEEEEEEecccCCCCCCCccCCCCccchhHHHHHHHHHcCCeEEEEEecCCC------CCce
Q 005618 187 LVAGDAFIFL-RG-ENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTS------PSEF 258 (688)
Q Consensus 187 L~aGD~VvF~-R~-~nGeL~VGIRRa~r~~~~~p~sv~s~~~m~~gvla~a~~aa~~g~~F~V~Y~PRas------~sEF 258 (688)
.+.||.|.+. .. .+|+.+-.-+ .. . .+....+-. -+.+|......|..++|.--|-.. ..-+
T Consensus 3 i~~gd~V~v~Y~g~~dG~~fdss~-~~-f-------~~G~g~vip-G~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~~~lv~ 72 (158)
T 3cgm_A 3 VGQDKVVTIRYTLQVEGEVLDQGE-LS-Y-------LHGHRNLIP-GLEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQ 72 (158)
T ss_dssp CCTTEEEEEEEEEEETTEEEEEEE-EE-E-------ETTSSSSCH-HHHHHHTTCBTTCEEEEEECGGGTTCCCCGGGEE
T ss_pred CCCCCEEEEEEEEEECCEEEEeeE-EE-E-------EECCCCcCh-HHHHHHcCCCCCCEEEEEECcHHHcCCCCcceEE
Confidence 5688988773 32 5776654433 11 1 111122222 245666667788888888766432 2457
Q ss_pred eEehhhHHHhhcCCcccccEEEEEeeCCCCCCceeeEEEEEeec
Q 005618 259 IVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIED 302 (688)
Q Consensus 259 VVp~~ky~~S~~~~ws~GmRFKM~fEtED~~~~r~~GTI~gv~~ 302 (688)
.|+++.|... ..|.+||+|.+. +++- +...|+|+.|.+
T Consensus 73 ~v~~~~f~~~--~~~~~G~~~~~~--~~~G--~~~~~~V~~v~~ 110 (158)
T 3cgm_A 73 VVPLSAFPED--AEVVPGAQFYAQ--DMEG--NPMPLTVVAVEG 110 (158)
T ss_dssp EEEGGGSCTT--SCCCTTCEEEEE--ETTT--EEEEEEEEEEET
T ss_pred EEEHHHCCCC--CCCccCCEEEEE--CCCC--CEEEEEEEEECC
Confidence 8899888543 579999999865 3332 567899999976
No 6
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=57.95 E-value=41 Score=32.08 Aligned_cols=102 Identities=23% Similarity=0.273 Sum_probs=62.5
Q ss_pred CCCCCEEEE-EEc--CCCcEEEEEEEecccCCCCCCCc-cCCCCccchhHHHHHHHHHcCCeEEEEEecCCC------CC
Q 005618 187 LVAGDAFIF-LRG--ENGELRVGVRRAMRQQGNVPSSV-ISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTS------PS 256 (688)
Q Consensus 187 L~aGD~VvF-~R~--~nGeL~VGIRRa~r~~~~~p~sv-~s~~~m~~gvla~a~~aa~~g~~F~V~Y~PRas------~s 256 (688)
.+.||.|++ |.. .+|+.+-.-+. ..|... +....+-.| +.+|......|..++|..-|-.. -.
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~------~~P~~f~lG~g~vipG-~eeaL~Gm~~Ge~~~v~ippe~aYG~~~~~~ 75 (171)
T 2k8i_A 3 VAKDLVVSLAYQVRTEDGVLVDESPV------SAPLDYLHGHGSLISG-LETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (171)
T ss_dssp CCTTEEEEEEEEEEETTSCEEEECCS------SSCEEEETTSCSSCSH-HHHHHTTCCTTCEEEEEEETTTSSCCCCTTS
T ss_pred CCCCCEEEEEEEEEECCCCEEeeccC------CcCEEEEECCCCcchH-HHHHHcCCCCCCEEEEEECcHHhcCCCChhh
Confidence 568999887 333 47776543321 122222 222223233 45666667788888888766532 23
Q ss_pred ceeEehhhHHHhhcCCcccccEEEEEeeCCCCCCceeeEEEEEeec
Q 005618 257 EFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIED 302 (688)
Q Consensus 257 EFVVp~~ky~~S~~~~ws~GmRFKM~fEtED~~~~r~~GTI~gv~~ 302 (688)
-+.||++.|.. ...+.+||+|.+. +++- . ..|+|+.|.+
T Consensus 76 v~~v~~~~f~~--~~~~~~G~~~~~~--~~~G--~-~~~~V~~v~~ 114 (171)
T 2k8i_A 76 VQRVPKDVFMG--VDELQVGMRFLAE--TDQG--P-VPVEITAVED 114 (171)
T ss_dssp EEEEEGGGGTT--SSCCCTTCEEEEE--ETTE--E-EEEEEEEECS
T ss_pred EEEeeHHHCCc--ccCccCCcEEEEE--CCCC--c-EEEEEEEEcC
Confidence 46889998864 2478999999854 4442 2 6899998865
No 7
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=43.87 E-value=31 Score=33.79 Aligned_cols=102 Identities=23% Similarity=0.246 Sum_probs=61.5
Q ss_pred CCCCCEEEE-EEc--CCCcEEEEEEEecccCCCCCCCc-cCCCCccchhHHHHHHHHHcCCeEEEEEecC------CCCC
Q 005618 187 LVAGDAFIF-LRG--ENGELRVGVRRAMRQQGNVPSSV-ISSHSMHLGVLATAWHAVSTGTMFTVYYKPR------TSPS 256 (688)
Q Consensus 187 L~aGD~VvF-~R~--~nGeL~VGIRRa~r~~~~~p~sv-~s~~~m~~gvla~a~~aa~~g~~F~V~Y~PR------as~s 256 (688)
.+.||.|.+ |.. .+|+++-.-+. ..|... +....+-. -|.+|..-...|..++|..-|- ....
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~------~~P~~f~lG~g~vip-G~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~~l 75 (196)
T 2kfw_A 3 VAKDLVVSLAYQVRTEDGVLVDESPV------SAPLDYLHGHGSLIS-GLETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (196)
T ss_dssp CCSSCEEEEEEEEEETTTEEEEECCT------TSCCEEESSSSSSCH-HHHHHHSSSCTTCEEEEECSTTTTSSCCCTTT
T ss_pred CCCCCEEEEEEEEEECCCCEEEecCC------CCCEEEEECCCCcch-HHHHHHcCCCCCCEEEEEeCcHHhcCCCChhh
Confidence 578999887 332 57765443220 123322 22222322 3456666667888888876654 2234
Q ss_pred ceeEehhhHHHhhcCCcccccEEEEEeeCCCCCCceeeEEEEEeec
Q 005618 257 EFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIED 302 (688)
Q Consensus 257 EFVVp~~ky~~S~~~~ws~GmRFKM~fEtED~~~~r~~GTI~gv~~ 302 (688)
-+.||++.|.. ...+.+||+|.+ ++++- .+.++|+.|.+
T Consensus 76 V~~vp~~~f~~--~~~~~~G~~~~~--~~~~G---~~~~~V~~v~~ 114 (196)
T 2kfw_A 76 VQRVPKDVFMG--VDELQVGMRFLA--ETDQG---PVPVEITAVED 114 (196)
T ss_dssp CEEECGGGCCC--SSCCCTTCEEEE--EETTE---EEEEEBCCCCS
T ss_pred EEEEEHHHCCC--ccCcccCCEEEE--ECCCC---cEEEEEEEEcC
Confidence 57888888853 246899999974 44442 57888888864
No 8
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=43.19 E-value=75 Score=30.35 Aligned_cols=105 Identities=14% Similarity=0.220 Sum_probs=65.7
Q ss_pred CCCCCCEEEEE-Ec--CCCcEEEEEEEecccCCCCCCCc-cCCCCccchhHHHHHHHHHcCCeEEEEEecCCCCCc----
Q 005618 186 RLVAGDAFIFL-RG--ENGELRVGVRRAMRQQGNVPSSV-ISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSE---- 257 (688)
Q Consensus 186 kL~aGD~VvF~-R~--~nGeL~VGIRRa~r~~~~~p~sv-~s~~~m~~gvla~a~~aa~~g~~F~V~Y~PRas~sE---- 257 (688)
..+.||.|.+. .. .+|+++-.-+- .+.|... +....+- --+.+|......|..++|..-|-..-.+
T Consensus 24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~-----~~~P~~f~lG~g~vi-pG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~~~ 97 (169)
T 4dt4_A 24 SVQSNSAVLVHFTLKLDDGTTAESTRN-----NGKPALFRLGDASLS-EGLEQHLLGLKVGDKTTFSLEPDAAFGVPSPD 97 (169)
T ss_dssp SCCTTCEEEEEEEEEETTSCEEEEHHH-----HTSCEEEETTSSSSC-HHHHHHHTTCCTTCEEEEEECGGGTTCCCCGG
T ss_pred cCCCCCEEEEEEEEEECCCCEEEecCC-----CCCCEEEEECCCCcc-HHHHHHHcCCCCCCEEEEEEChHHhcCCCChH
Confidence 57889999883 33 67876543210 0123222 2222222 2356677777888889998777543333
Q ss_pred --eeEehhhHHHhhcCCcccccEEEEEeeCCCCCCceeeEEEEEeec
Q 005618 258 --FIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIED 302 (688)
Q Consensus 258 --FVVp~~ky~~S~~~~ws~GmRFKM~fEtED~~~~r~~GTI~gv~~ 302 (688)
+.||++.|... ..+.+||+|.+ ++++- ..+.|+|+.|.+
T Consensus 98 lv~~vp~~~f~~~--~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 138 (169)
T 4dt4_A 98 LIQYFSRREFMDA--GEPEIGAIMLF--TAMDG--SEMPGVIREING 138 (169)
T ss_dssp GEEEEEGGGGTTT--CCCCTTCEEEE--ECTTS--CEEEEEEEEEET
T ss_pred HEEEeCHHHCCCc--CCCCCCcEEEE--ECCCC--CEEEEEEEEEcC
Confidence 67888888643 45789999976 44442 467899999975
No 9
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=39.71 E-value=49 Score=27.59 Aligned_cols=54 Identities=6% Similarity=0.204 Sum_probs=39.5
Q ss_pred hcCCcccccEEEEEeeCCCCCCceeeEEEEEeecCCCCCCCCCCcceeEEeecCCCCCCCCCCcccCceeec
Q 005618 269 IKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEPA 340 (688)
Q Consensus 269 ~~~~ws~GmRFKM~fEtED~~~~r~~GTI~gv~~~Dp~rWP~S~WR~L~VrWDe~~~~~~~~RVSPWeIEpv 340 (688)
|-..|.+|+++-.++ ++ .++|-++|++|... ....|..++.. .+.|..=+|-|+
T Consensus 3 ~~~~~~vGd~vmArW-~D---~~yYpA~I~si~~~----------~~Y~V~F~dG~----~etvk~~~ikp~ 56 (67)
T 3p8d_A 3 MSSEFQINEQVLACW-SD---CRFYPAKVTAVNKD----------GTYTVKFYDGV----VQTVKHIHVKAF 56 (67)
T ss_dssp --CCCCTTCEEEEEC-TT---SCEEEEEEEEECTT----------SEEEEEETTSC----EEEEEGGGEEEC
T ss_pred cCcccccCCEEEEEc-CC---CCEeeEEEEEECCC----------CeEEEEEeCCc----eEEEeHHHcccC
Confidence 556899999999999 43 37999999999852 46899999933 455655555553
No 10
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=38.43 E-value=1.5e+02 Score=27.41 Aligned_cols=105 Identities=18% Similarity=0.110 Sum_probs=64.3
Q ss_pred cCCCCCCCEEEEE-Ec--C-CCcEEEEEEEecccCCCCCCCcc-CCCCccchhHHHHHHHHHcCCeEEEEEecCC-----
Q 005618 184 SKRLVAGDAFIFL-RG--E-NGELRVGVRRAMRQQGNVPSSVI-SSHSMHLGVLATAWHAVSTGTMFTVYYKPRT----- 253 (688)
Q Consensus 184 ~KkL~aGD~VvF~-R~--~-nGeL~VGIRRa~r~~~~~p~sv~-s~~~m~~gvla~a~~aa~~g~~F~V~Y~PRa----- 253 (688)
.+..+.||.|.+. .. . +|+.+-.-+. ..|.... ....+-. -+.+|..-...|..++|.--|-.
T Consensus 4 ~~~i~~gd~V~v~Y~g~~~~dG~~fdss~~------~~p~~f~~G~g~vip-g~e~aL~gm~~Ge~~~v~ipp~~aYG~~ 76 (151)
T 2kr7_A 4 HDLESIKQAALIEYEVREQGSSIVLDSNIS------KEPLEFIIGTNQIIA-GLEKAVLKAQIGEWEEVVIAPEEAYGVY 76 (151)
T ss_dssp CCCTTSCCEEEEEEEEEESSCSCEEEESTT------TCCEEEETTCCCSCH-HHHHHHTTCCBTCEEEEEECGGGTTCSS
T ss_pred ccCCCCCCEEEEEEEEEECCCCCEEEeCCC------CcCEEEEECCCCccH-HHHHHHcCCCCCCEEEEEEecHHHcCCC
Confidence 3557789999884 33 3 7776443220 1232222 2222222 34566666778888888876542
Q ss_pred -CCCceeEehhhHHHhhcCCcccccEEEEEeeCCCCCCceeeEEEEEeec
Q 005618 254 -SPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIED 302 (688)
Q Consensus 254 -s~sEFVVp~~ky~~S~~~~ws~GmRFKM~fEtED~~~~r~~GTI~gv~~ 302 (688)
...-+.|++..| . ...+.+||+|.+. +++- ....|+|+.|.+
T Consensus 77 ~~~~v~~v~~~~f-~--~~~~~~G~~~~~~--~~~G--~~~~~~V~~v~~ 119 (151)
T 2kr7_A 77 ESSYLQEVPRDQF-E--GIELEKGMSVFGQ--TEDN--QTIQAIIKDFSA 119 (151)
T ss_dssp CSCEEEEEEGGGG-T--TSCCCTTCEEEEE--ETTT--EEEEEEEEEECS
T ss_pred CcceEEEEcHHHc-C--CCCCccCCEEEEE--CCCC--CEEEEEEEEECC
Confidence 234578899888 2 3578999999864 3332 467999999975
No 11
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=31.85 E-value=49 Score=25.99 Aligned_cols=41 Identities=12% Similarity=0.205 Sum_probs=30.0
Q ss_pred CCcccccEEEEEeeCCCCCCceeeEEEEEeecCCCCCCCCCCcceeEEeecCC
Q 005618 271 NNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRCLKVRWDET 323 (688)
Q Consensus 271 ~~ws~GmRFKM~fEtED~~~~r~~GTI~gv~~~Dp~rWP~S~WR~L~VrWDe~ 323 (688)
..|.+|+.+..+|..+. .||.++|.++...+ ....|.-.+=
T Consensus 2 ~~~~~G~~c~A~~s~Dg---~wYrA~I~~i~~~~---------~~~~V~f~DY 42 (59)
T 1mhn_A 2 QQWKVGDKCSAIWSEDG---CIYPATIASIDFKR---------ETCVVVYTGY 42 (59)
T ss_dssp CCCCTTCEEEEECTTTS---CEEEEEEEEEETTT---------TEEEEEETTT
T ss_pred CcCCcCCEEEEEECCCC---CEEEEEEEEEcCCC---------CEEEEEEEcC
Confidence 46999999999995433 79999999996421 3456766553
No 12
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=31.52 E-value=50 Score=29.90 Aligned_cols=71 Identities=18% Similarity=0.171 Sum_probs=49.1
Q ss_pred ehhhHHHhhcCCcccccEEEEEeeCCCCCCceeeEEEEEeecCCCCCCCCCCcceeEEeecCCCCCCCCCCcccCceeec
Q 005618 261 PYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEPA 340 (688)
Q Consensus 261 p~~ky~~S~~~~ws~GmRFKM~fEtED~~~~r~~GTI~gv~~~Dp~rWP~S~WR~L~VrWDe~~~~~~~~RVSPWeIEpv 340 (688)
..+.|-.=+..+..+|||+||.=.-|+-+. -=.|++. ++ .+-. | ..||.|..... .-.|.-=.||.+
T Consensus 10 s~~~Ya~YVr~~l~pGM~VR~~~dyeev~~-GD~G~vl-~s-~~Gl--~-----~vQv~W~~~G~---TyWV~~~~~Ell 76 (105)
T 2jng_A 10 SGNTYALYVRDTLQPGMRVRMLDDYEEISA-GDEGEFR-QS-NNGV--P-----PVQVFWESTGR---TYWVHWHMLEIL 76 (105)
T ss_dssp SSHHHHHHHHHHCCTTCEEEECSCBTTBCT-TCEEEEE-EE-CTTS--S-----EEEEEETTTTE---EEEEEGGGEEEC
T ss_pred cchhHHHHHHhcCCCccEEeeehhhhhhcc-CCceeEE-ec-CCCC--c-----cceeeehhcCc---eEEEEeehhhhc
Confidence 467888889999999999999655444332 2367777 33 2322 2 89999997763 456666678887
Q ss_pred CCCC
Q 005618 341 LAPP 344 (688)
Q Consensus 341 ~~~~ 344 (688)
+.+.
T Consensus 77 g~~~ 80 (105)
T 2jng_A 77 GFEE 80 (105)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 7654
No 13
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=30.31 E-value=2.4e+02 Score=26.35 Aligned_cols=105 Identities=16% Similarity=0.213 Sum_probs=61.3
Q ss_pred CCCCCEEEEE-Ec-CCCcEEEEEEEe--cc------cCCCCCCCc-cCCCCccchhHHHHHHHHHcCCeEEEEEecCCCC
Q 005618 187 LVAGDAFIFL-RG-ENGELRVGVRRA--MR------QQGNVPSSV-ISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSP 255 (688)
Q Consensus 187 L~aGD~VvF~-R~-~nGeL~VGIRRa--~r------~~~~~p~sv-~s~~~m~~gvla~a~~aa~~g~~F~V~Y~PRas~ 255 (688)
++.||.|.+. .. -+|+++-.-+.. .. .....|... +....+-. -+.+|......|..++|+--|-..-
T Consensus 2 i~~Gd~V~v~Y~g~ldG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~-G~eeaL~gm~~Ge~~~v~Ipp~~aY 80 (157)
T 3pr9_A 2 VEKGKMVKISYDGYVDGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLP-GLDEAILEMDVGEEREVVLPPEKAF 80 (157)
T ss_dssp CCTTCEEEEEEEEEETTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCH-HHHHHHHHCCTTCEEEEEECGGGTT
T ss_pred CCCCCEEEEEEEEEECCEEEEeccccccccccccccccCCCCEEEEECCCcHHH-HHHHHHcCCCCCCEEEEEECcHHhc
Confidence 4578888873 22 277665443211 00 000123322 22222322 3567777888999999987664332
Q ss_pred ------CceeEehhhHHHhhcCCcccccEEEEEeeCCCCCCceeeEEEEEeec
Q 005618 256 ------SEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIED 302 (688)
Q Consensus 256 ------sEFVVp~~ky~~S~~~~ws~GmRFKM~fEtED~~~~r~~GTI~gv~~ 302 (688)
.=..||++.|.+. .....+||+|.+ +++ .|+|+.|.+
T Consensus 81 G~~~~~~V~~v~~~~f~~~-~~~~~~G~~~~~--~~~-------~~~V~~v~~ 123 (157)
T 3pr9_A 81 GKRDPSKIKLIPLSEFTKR-GIKPIKGLTITI--DGI-------PGKIVSINS 123 (157)
T ss_dssp CCCCGGGEEEEEHHHHHHT-TCCCCTTCEEEE--TTE-------EEEEEEEET
T ss_pred CCCChHhEEEcCHHHCCcc-cCCcCCCcEEEe--cCC-------CeEEEEEcC
Confidence 2367899988764 345678999975 321 589999875
No 14
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=29.72 E-value=50 Score=26.47 Aligned_cols=44 Identities=9% Similarity=0.250 Sum_probs=32.8
Q ss_pred hcCCcccccEEEEEeeCCCCCCceeeEEEEEeecCCCCCCCCCCcceeEEeecCCC
Q 005618 269 IKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRCLKVRWDETS 324 (688)
Q Consensus 269 ~~~~ws~GmRFKM~fEtED~~~~r~~GTI~gv~~~Dp~rWP~S~WR~L~VrWDe~~ 324 (688)
....|.+|+.+..+|..|. .||.++|.+|.... ....|...+=.
T Consensus 5 ~~~~~~vGd~c~A~~s~Dg---~wYrA~I~~v~~~~---------~~~~V~fvdYG 48 (64)
T 4a4f_A 5 PTHSWKVGDKCMAVWSEDG---QCYEAEIEEIDEEN---------GTAAITFAGYG 48 (64)
T ss_dssp CSSCCCTTCEEEEECTTTS---SEEEEEEEEEETTT---------TEEEEEETTTT
T ss_pred cCCCCCCCCEEEEEECCCC---CEEEEEEEEEcCCC---------CEEEEEEEecC
Confidence 3568999999999995443 79999999998421 24677777654
No 15
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=29.53 E-value=30 Score=29.13 Aligned_cols=33 Identities=15% Similarity=0.330 Sum_probs=29.2
Q ss_pred eeeccCCCCCCCEEEEEEc-CCCcEEEEEEEecc
Q 005618 180 VFVSSKRLVAGDAFIFLRG-ENGELRVGVRRAMR 212 (688)
Q Consensus 180 ~FVk~KkL~aGD~VvF~R~-~nGeL~VGIRRa~r 212 (688)
++++.-+|+.||.+...-+ .+|++.+..+|-++
T Consensus 32 eI~kaLgIk~gD~fel~ve~kdgeIvLcykRVKk 65 (68)
T 3o27_A 32 DIAEALDIKPDDTFILNMEQKDGDIVLSYKRVKE 65 (68)
T ss_dssp HHHHHTTCCTTCCEEEEEEEETTEEEEEEEECGG
T ss_pred HHHHHhCCCCCCEEEEEEecCCCeEEEEehhhhh
Confidence 7899999999999999886 58889999999654
No 16
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=29.48 E-value=80 Score=27.54 Aligned_cols=55 Identities=5% Similarity=0.146 Sum_probs=39.8
Q ss_pred hcCCcccccEEEEEeeCCCCCCceeeEEEEEeecCCCCCCCCCCcceeEEeecCCCCCCCCCCcccCceeecC
Q 005618 269 IKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEPAL 341 (688)
Q Consensus 269 ~~~~ws~GmRFKM~fEtED~~~~r~~GTI~gv~~~Dp~rWP~S~WR~L~VrWDe~~~~~~~~RVSPWeIEpv~ 341 (688)
-...|.+|+++-.++ ++ .++|-++|++|... ....|.+++.. .+.|.+=+|.|+.
T Consensus 18 ~~~~f~vGd~VlArW-~D---~~yYPAkI~sV~~~----------~~YtV~F~DG~----~etvk~~~IKp~~ 72 (85)
T 3qii_A 18 GSSEFQINEQVLACW-SD---CRFYPAKVTAVNKD----------GTYTVKFYDGV----VQTVKHIHVKAFS 72 (85)
T ss_dssp ---CCCTTCEEEEEC-TT---SCEEEEEEEEECTT----------SEEEEEETTSC----EEEEEGGGEEECC
T ss_pred CCcccccCCEEEEEe-CC---CCEeeEEEEEECCC----------CeEEEEEeCCC----eEEecHHHcccCC
Confidence 346899999999999 43 37999999999862 36999999943 4556666666643
No 17
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=29.47 E-value=49 Score=25.43 Aligned_cols=28 Identities=4% Similarity=0.109 Sum_probs=22.4
Q ss_pred CcccccEEEEEeeCCCCCCceeeEEEEEeec
Q 005618 272 NYSIGMRFKMRFEGEEAPEQRFTGTIVGIED 302 (688)
Q Consensus 272 ~ws~GmRFKM~fEtED~~~~r~~GTI~gv~~ 302 (688)
.|.+|+..-.+|..|. .||.++|.++..
T Consensus 1 ~wk~G~~c~A~~s~Dg---~wYrA~I~~i~~ 28 (54)
T 3s6w_A 1 MWKPGDECFALYWEDN---KFYRAEVEALHS 28 (54)
T ss_dssp CCCTTCEEEEEETTTT---EEEEEEEEEC--
T ss_pred CCCCCCEEEEEECCCC---CEEEEEEEEEeC
Confidence 4899999999995443 799999999964
No 18
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.08 E-value=39 Score=32.37 Aligned_cols=24 Identities=38% Similarity=0.392 Sum_probs=21.1
Q ss_pred CCCCCCCEEEEEEcCCCcEEEEEE
Q 005618 185 KRLVAGDAFIFLRGENGELRVGVR 208 (688)
Q Consensus 185 KkL~aGD~VvF~R~~nGeL~VGIR 208 (688)
..|.+||.|-|++..+|+|++.|-
T Consensus 116 ~~l~~Gd~ig~~~~~~G~l~~~iN 139 (170)
T 2e63_A 116 DQLGEGDRVGVERTVAGELRLWVN 139 (170)
T ss_dssp GGCCSSCCEEEEECTTSCEEEEES
T ss_pred cccCCCCEEEEEEcCCcEEEEEEC
Confidence 356899999999999999999873
No 19
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=23.52 E-value=79 Score=27.37 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=31.5
Q ss_pred cCCcccccEEEEEeeCCCCCCceeeEEEEEeecCCCCCCCCCCcceeEEeecCCC
Q 005618 270 KNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRCLKVRWDETS 324 (688)
Q Consensus 270 ~~~ws~GmRFKM~fEtED~~~~r~~GTI~gv~~~Dp~rWP~S~WR~L~VrWDe~~ 324 (688)
...|.+|+.+..+|..+. .||.++|.+|.... ....|...+=.
T Consensus 8 ~~~~kvGd~C~A~ys~Dg---~wYrA~I~~i~~~~---------~~~~V~fiDYG 50 (88)
T 1g5v_A 8 LQQWKVGDKCSAIWSEDG---CIYPATIASIDFKR---------ETCVVVYTGYG 50 (88)
T ss_dssp -CCCCSSCEEEEECTTTC---CEEEEEEEEEETTT---------TEEEEEETTTC
T ss_pred cCCCCCCCEEEEEECCCC---CEEEEEEEEecCCC---------CEEEEEEecCC
Confidence 457999999999995443 79999999996421 34677776544
No 20
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.21 E-value=69 Score=26.94 Aligned_cols=40 Identities=13% Similarity=0.285 Sum_probs=31.9
Q ss_pred cCCcccccEEEEEeeCCCCCCceeeEEEEEeecCCCCCCCCCCcceeEEeecCC
Q 005618 270 KNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRCLKVRWDET 323 (688)
Q Consensus 270 ~~~ws~GmRFKM~fEtED~~~~r~~GTI~gv~~~Dp~rWP~S~WR~L~VrWDe~ 323 (688)
...|.+|+++.-+|. | ..||-++|..|... ....|..++-
T Consensus 7 ~~~~kvGd~clA~ws-D---g~~Y~A~I~~v~~~----------~~~~V~f~Dy 46 (74)
T 2equ_A 7 GFDFKAGEEVLARWT-D---CRYYPAKIEAINKE----------GTFTVQFYDG 46 (74)
T ss_dssp CCCCCTTCEEEEECS-S---SSEEEEEEEEESTT----------SSEEEEETTS
T ss_pred CCCCCCCCEEEEECC-C---CCEEEEEEEEECCC----------CEEEEEEecC
Confidence 467999999999997 3 37999999999631 3578888875
No 21
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=22.70 E-value=1.1e+02 Score=37.40 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=36.3
Q ss_pred cCCcccccEEEEEeeCCCCCCceeeEEEEEeecCCCCCCCCCCcceeEEeecCCCC
Q 005618 270 KNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRCLKVRWDETST 325 (688)
Q Consensus 270 ~~~ws~GmRFKM~fEtED~~~~r~~GTI~gv~~~Dp~rWP~S~WR~L~VrWDe~~~ 325 (688)
+..+..|+||.|.=+....+- --.|||+||..... =.+|+|-||++=.
T Consensus 1063 ~Q~F~LGDRVv~VqdsG~VPl-~~kGTVVGi~~~~~-------~~~ldVvFD~~F~ 1110 (1155)
T 3pie_A 1063 SQRFHLGDRVMYIQDSGKVPL-HSKGTVVGYTSIGK-------NVSIQVLFDNEII 1110 (1155)
T ss_pred CCcccCCCeEEEecCCCCCcc-ccceEEEEEecCCC-------ceEEEEEeccCcc
Confidence 456999999999877655553 34899999986432 3689999999843
No 22
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=22.23 E-value=76 Score=30.31 Aligned_cols=21 Identities=10% Similarity=0.327 Sum_probs=19.1
Q ss_pred CCCCEEEEEEcCCCcEEEEEE
Q 005618 188 VAGDAFIFLRGENGELRVGVR 208 (688)
Q Consensus 188 ~aGD~VvF~R~~nGeL~VGIR 208 (688)
..||.+.|++..+|+|++.|-
T Consensus 107 ~~g~~l~f~v~~~G~l~~~iN 127 (168)
T 2yue_A 107 EKDNILYYYVNGAGDVIYGIN 127 (168)
T ss_dssp CSSCEEEEEECTTSEEEEEES
T ss_pred cCCCEEEEEEcCCCEEEEEEC
Confidence 679999999999999999883
No 23
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=20.97 E-value=2.1e+02 Score=24.38 Aligned_cols=62 Identities=18% Similarity=0.133 Sum_probs=37.9
Q ss_pred ceeeEEEecccccCCCCCceEEcccchhccCCCCCCCCCCCccEEEEEeCCCCeEEEEEEEeCCCCceeeccCceeeecc
Q 005618 105 HVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSS 184 (688)
Q Consensus 105 ~~~~F~K~LT~SDV~~~grfsVPk~~Ae~~FPpLd~~~~~p~q~L~~kDl~G~~W~FR~~yRg~prrhlLTtGWs~FVk~ 184 (688)
.+-...++++..++.. |..-+.. ...-..+.+.|..| ..+.+.|+ ..+..
T Consensus 13 ~v~i~~~V~~~~~~r~--------------~~~~~G~-~~~v~~~~l~DeTG---~I~~tlW~------------~~~~~ 62 (97)
T 3e0e_A 13 SGTINAEVVTAYPKKE--------------FSRKDGT-KGQLKSLFLKDDTG---SIRGTLWN------------ELADF 62 (97)
T ss_dssp EEEEEEEEEEECCCEE--------------EC----C-CEEEEEEEEEETTE---EEEEEEEG------------GGGGC
T ss_pred cEEEEEEEEECCCceE--------------EEcCCCC-eeEEEEEEEECCCC---cEEEEEEC------------Ccccc
Confidence 4567778887776643 1111111 11245688889888 66666665 33333
Q ss_pred CCCCCCCEEEEEEc
Q 005618 185 KRLVAGDAFIFLRG 198 (688)
Q Consensus 185 KkL~aGD~VvF~R~ 198 (688)
.|++||.|.| ++
T Consensus 63 -~i~~Gdvv~i-~g 74 (97)
T 3e0e_A 63 -EVKKGDIAEV-SG 74 (97)
T ss_dssp -CCCTTCEEEE-EE
T ss_pred -ccCCCCEEEE-EE
Confidence 7999999999 54
Done!