BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005619
(688 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 236 bits (603), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 204/630 (32%), Positives = 304/630 (48%), Gaps = 68/630 (10%)
Query: 17 LTSLEYLALYDNKFKG-RLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLS 75
L SLE L L N G + + +L+ +S V + C+ L+ L
Sbjct: 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV---NLEFLD 206
Query: 76 LPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLT 135
+ + N FL L++LD+S NKL+G+F + + T+L++L +++N F G
Sbjct: 207 VSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGPIPP 265
Query: 136 SAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIG---------- 185
L L ++ N FTG++P + L +++S N F G +P G
Sbjct: 266 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325
Query: 186 ---------------KMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIF 230
KM+GL++LD+S N+F+GEL +S SL L LS+NNF G I
Sbjct: 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385
Query: 231 PNYVNLTR--LLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLY 288
PN + L LYL NN F+GKI L SEL+ L +S N+LSG IPS +G+ S L
Sbjct: 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445
Query: 289 ILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSI 348
L + N+LEG IP + + + ++E L L N L G I
Sbjct: 446 DLKLWLNMLEGEIPQEL-----------------------MYVKTLETLILDFNDLTGEI 482
Query: 349 PNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSI 408
P+ + + L + L +N G IP I NL L L N G IP +L R L
Sbjct: 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542
Query: 409 MDLSHNRLNGSIPACITNLLFWKVGSRYLSG--FVMVVMDLGVADIRNYYNSTVQLSLDG 466
+DL+ N NG+IPA + K+ + +++G +V + D G+ + + + L G
Sbjct: 543 LDLNTNLFNGTIPAAMFKQ-SGKIAANFIAGKRYVYIKND-GMK--KECHGAGNLLEFQG 598
Query: 467 IDGRSL---GTQVEVNFMTKNRYESYKGVILD---YMAGLDLSSNKLTGDIPSEICDLQN 520
I L T+ N +T Y + D M LD+S N L+G IP EI +
Sbjct: 599 IRSEQLNRLSTRNPCN-ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 657
Query: 521 IHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLS 580
+ LNL HN +SGSIP+ +L+ + LDLS NKL+G+IP ++ L L++ D+S N+LS
Sbjct: 658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717
Query: 581 GPIPDKEQFSTFDESSYRGNLHLCGPPINK 610
GPIP+ QF TF + + N LCG P+ +
Sbjct: 718 GPIPEMGQFETFPPAKFLNNPGLCGYPLPR 747
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 140/446 (31%), Positives = 214/446 (47%), Gaps = 43/446 (9%)
Query: 166 LDCMNISKNSFEGNIPS--SIGKMQGLRLLDVSSN--KFAGELSQSPVTNCFSLEWLQLS 221
L +++S+NS G + + S+G GL+ L+VSSN F G++S N SLE L LS
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN--SLEVLDLS 159
Query: 222 NNNFDGQIFPNYV---NLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIP 278
N+ G +V L L + N SG + + R L LD+S+N+ S IP
Sbjct: 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP 217
Query: 279 SWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLY 338
++G+ S L L +S N L G+ + L++L+IS N G I L L S+++L
Sbjct: 218 -FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP-IPPLPLKSLQYLS 275
Query: 339 LQSNALGGSIPNTIFRGSALET---LDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGP 395
L N G IP+ F A +T LDL N+F+G +P S L +L L N G
Sbjct: 276 LAENKFTGEIPD--FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 396 IP-HQLCQLRKLSIMDLSHNRLNGSIPACITN----LLFWKVGSRYLSGFVMVVMDLGVA 450
+P L ++R L ++DLS N +G +P +TN LL + S SG ++ +
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL----- 388
Query: 451 DIRNYYNSTVQLSL--DGIDGRSLGT----------QVEVNFMTKNRYESYKGVILDYMA 498
+N N+ +L L +G G+ T + N+++ S L +
Sbjct: 389 -CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS--LSKLR 445
Query: 499 GLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 558
L L N L G+IP E+ ++ + L L N L+G IP SN + + LS+N+L G+
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505
Query: 559 IPPQLTELHSLSKFDVSYNDLSGPIP 584
IP + L +L+ +S N SG IP
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIP 531
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 144/485 (29%), Positives = 216/485 (44%), Gaps = 69/485 (14%)
Query: 1 MSSNQLSGILPSVIANLT----------------------SLEYLALYDNKFKGRLFSFC 38
+S N+LSG I+ T SL+YL+L +NKF G + F
Sbjct: 230 ISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFL 289
Query: 39 SLA--NLSKLEVFQLSMEADLLQVKIENCLPTF------QLKVLSLPNCNLGVIP-NFLL 89
S A L+ L DL +P F + N G +P + LL
Sbjct: 290 SGACDTLTGL---------DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340
Query: 90 HQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLT----SAQHGLISLD 145
LK LDLS N+ +G P L + L L L++N+FSG L + ++ L L
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400
Query: 146 ISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELS 205
+ +N FTGK+P + +L +++S N G IPSS+G + LR L + N GE+
Sbjct: 401 LQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459
Query: 206 QSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMV 265
Q + +LE L L N+ G+I N T L ++ L NN +G+I + R L +
Sbjct: 460 QE-LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518
Query: 266 LDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIP---------VQFNNLAILQILDI 316
L +SNN SG+IP+ +G+ +L L ++ NL G IP + N +A + + I
Sbjct: 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 578
Query: 317 SENNLS-------------GSMISTLN-LSSVEHLYLQSNALGGSIPNTIFRGSALETLD 362
+ + G LN LS+ + S GG T ++ LD
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638
Query: 363 LRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPA 422
+ N G IP +I L L L N + G IP ++ LR L+I+DLS N+L+G IP
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698
Query: 423 CITNL 427
++ L
Sbjct: 699 AMSAL 703
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 155/335 (46%), Gaps = 49/335 (14%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+S N LSG +PS + +L+ L L L+ N +G + +L+ V
Sbjct: 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI-------------------PQELMYV 465
Query: 61 KIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWL--LENNTK 118
K T + +L N G IP+ L + NL ++ LS+N+L G P W+ LEN
Sbjct: 466 K------TLETLILDF-NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN--- 515
Query: 119 LEVLYLTNNSFSG---FQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNS 175
L +L L+NNSFSG +L + LI LD+++N F G +P M K+ I+
Sbjct: 516 LAILKLSNNSFSGNIPAELGDCRS-LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574
Query: 176 F-----EGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIF 230
+ +G G L + S + +++P +++ + G
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC---------NITSRVYGGHTS 625
Query: 231 PNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYIL 290
P + N ++FL + N SG I + L +L++ +N +SG IP +G+ L IL
Sbjct: 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 685
Query: 291 SMSKNLLEGNIPVQFNNLAILQILDISENNLSGSM 325
+S N L+G IP + L +L +D+S NNLSG +
Sbjct: 686 DLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 105/407 (25%), Positives = 183/407 (44%), Gaps = 71/407 (17%)
Query: 243 YLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSW--MGNFSNLYILSMSKNLLEGN 300
+L N+H +G + G S+ L LD+S N LSG + + +G+ S L L++S N L+
Sbjct: 83 FLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-- 139
Query: 301 IPVQFN---NLAILQILDISENNLSGSMISTLNLS----SVEHLYLQSNALGGSIPNTIF 353
P + + L L++LD+S N++SG+ + LS ++HL + N + G + +
Sbjct: 140 FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVS 197
Query: 354 RGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSH 413
R LE LD+ N F IP + + S L+ L + GN L G + +L ++++S
Sbjct: 198 RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256
Query: 414 NRLNGSIPAC-ITNLLFWKVGSRYLSGFV----------MVVMDLG----VADIRNYYNS 458
N+ G IP + +L + + +G + + +DL + ++ S
Sbjct: 257 NQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316
Query: 459 TVQLSLDGIDGRSLGTQVEVNFMTKNR--------YESYKGVILDYMAG-------LDLS 503
L + + ++ ++ + K R + + G + + + LDLS
Sbjct: 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376
Query: 504 SNKLTGDIPSEICD----------LQN----------------IHGLNLSHNFLSGSIPE 537
SN +G I +C LQN + L+LS N+LSG+IP
Sbjct: 377 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436
Query: 538 SFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIP 584
S +L + L L N L G+IP +L + +L + +NDL+G IP
Sbjct: 437 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 236 bits (602), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 203/629 (32%), Positives = 303/629 (48%), Gaps = 66/629 (10%)
Query: 17 LTSLEYLALYDNKFKG-RLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLS 75
L SLE L L N G + + +L+ +S V + C+ L+ L
Sbjct: 147 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV---NLEFLD 203
Query: 76 LPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLT 135
+ + N FL L++LD+S NKL+G+F + + T+L++L +++N F G
Sbjct: 204 VSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGPIPP 262
Query: 136 SAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIG---------- 185
L L ++ N FTG++P + L +++S N F G +P G
Sbjct: 263 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 322
Query: 186 ---------------KMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIF 230
KM+GL++LD+S N+F+GEL +S SL L LS+NNF G I
Sbjct: 323 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 382
Query: 231 PNYVNLTR--LLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLY 288
PN + L LYL NN F+GKI L SEL+ L +S N+LSG IPS +G+ S L
Sbjct: 383 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 442
Query: 289 ILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSI 348
L + N+LEG IP + + + ++E L L N L G I
Sbjct: 443 DLKLWLNMLEGEIPQEL-----------------------MYVKTLETLILDFNDLTGEI 479
Query: 349 PNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSI 408
P+ + + L + L +N G IP I NL L L N G IP +L R L
Sbjct: 480 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 539
Query: 409 MDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMV-VMDLGVADIRNYYNSTVQLSLDGI 467
+DL+ N NG+IPA + K+ + +++G V + + G+ + + + L GI
Sbjct: 540 LDLNTNLFNGTIPAAMFKQ-SGKIAANFIAGKRYVYIKNDGMK--KECHGAGNLLEFQGI 596
Query: 468 DGRSL---GTQVEVNFMTKNRYESYKGVILD---YMAGLDLSSNKLTGDIPSEICDLQNI 521
L T+ N +T Y + D M LD+S N L+G IP EI + +
Sbjct: 597 RSEQLNRLSTRNPCN-ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL 655
Query: 522 HGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSG 581
LNL HN +SGSIP+ +L+ + LDLS NKL+G+IP ++ L L++ D+S N+LSG
Sbjct: 656 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 715
Query: 582 PIPDKEQFSTFDESSYRGNLHLCGPPINK 610
PIP+ QF TF + + N LCG P+ +
Sbjct: 716 PIPEMGQFETFPPAKFLNNPGLCGYPLPR 744
Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 139/436 (31%), Positives = 208/436 (47%), Gaps = 47/436 (10%)
Query: 166 LDCMNISKNSFEGNIPS--SIGKMQGLRLLDVSSN--KFAGELSQSPVTNCFSLEWLQLS 221
L +++S+NS G + + S+G GL+ L+VSSN F G++S N SLE L LS
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN--SLEVLDLS 156
Query: 222 NNNFDGQIFPNYV---NLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIP 278
N+ G +V L L + N SG + + R L LD+S+N+ S IP
Sbjct: 157 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP 214
Query: 279 SWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLY 338
++G+ S L L +S N L G+ + L++L+IS N G I L L S+++L
Sbjct: 215 -FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP-IPPLPLKSLQYLS 272
Query: 339 LQSNALGGSIPNTIFRGSALET---LDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGP 395
L N G IP+ F A +T LDL N+F+G +P S L +L L N G
Sbjct: 273 LAENKFTGEIPD--FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 396 IP-HQLCQLRKLSIMDLSHNRLNGSIPACITN----LLFWKVGSRYLSGFVMVVMDLGVA 450
+P L ++R L ++DLS N +G +P +TN LL + S SG ++ +
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL----- 385
Query: 451 DIRNYYNSTVQLSL--DGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLT 508
+N N+ +L L +G G+ T + + L LS N L+
Sbjct: 386 -CQNPKNTLQELYLQNNGFTGKIPPTLSNCS----------------ELVSLHLSFNYLS 428
Query: 509 GDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHS 568
G IPS + L + L L N L G IP+ +K +E+L L N L G+IP L+ +
Sbjct: 429 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 488
Query: 569 LSKFDVSYNDLSGPIP 584
L+ +S N L+G IP
Sbjct: 489 LNWISLSNNRLTGEIP 504
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 144/485 (29%), Positives = 216/485 (44%), Gaps = 69/485 (14%)
Query: 1 MSSNQLSGILPSVIANLT----------------------SLEYLALYDNKFKGRLFSFC 38
+S N+LSG I+ T SL+YL+L +NKF G + F
Sbjct: 227 ISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFL 286
Query: 39 SLA--NLSKLEVFQLSMEADLLQVKIENCLPTF------QLKVLSLPNCNLGVIP-NFLL 89
S A L+ L DL +P F + N G +P + LL
Sbjct: 287 SGACDTLTGL---------DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 337
Query: 90 HQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLT----SAQHGLISLD 145
LK LDLS N+ +G P L + L L L++N+FSG L + ++ L L
Sbjct: 338 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 397
Query: 146 ISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELS 205
+ +N FTGK+P + +L +++S N G IPSS+G + LR L + N GE+
Sbjct: 398 LQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 456
Query: 206 QSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMV 265
Q + +LE L L N+ G+I N T L ++ L NN +G+I + R L +
Sbjct: 457 QE-LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 515
Query: 266 LDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIP---------VQFNNLAILQILDI 316
L +SNN SG+IP+ +G+ +L L ++ NL G IP + N +A + + I
Sbjct: 516 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 575
Query: 317 SENNLS-------------GSMISTLN-LSSVEHLYLQSNALGGSIPNTIFRGSALETLD 362
+ + G LN LS+ + S GG T ++ LD
Sbjct: 576 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 635
Query: 363 LRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPA 422
+ N G IP +I L L L N + G IP ++ LR L+I+DLS N+L+G IP
Sbjct: 636 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 695
Query: 423 CITNL 427
++ L
Sbjct: 696 AMSAL 700
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 155/335 (46%), Gaps = 49/335 (14%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+S N LSG +PS + +L+ L L L+ N +G + +L+ V
Sbjct: 422 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI-------------------PQELMYV 462
Query: 61 KIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWL--LENNTK 118
K T + +L N G IP+ L + NL ++ LS+N+L G P W+ LEN
Sbjct: 463 K------TLETLILDF-NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN--- 512
Query: 119 LEVLYLTNNSFSG---FQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNS 175
L +L L+NNSFSG +L + LI LD+++N F G +P M K+ I+
Sbjct: 513 LAILKLSNNSFSGNIPAELGDCRS-LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 571
Query: 176 F-----EGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIF 230
+ +G G L + S + +++P +++ + G
Sbjct: 572 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC---------NITSRVYGGHTS 622
Query: 231 PNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYIL 290
P + N ++FL + N SG I + L +L++ +N +SG IP +G+ L IL
Sbjct: 623 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 682
Query: 291 SMSKNLLEGNIPVQFNNLAILQILDISENNLSGSM 325
+S N L+G IP + L +L +D+S NNLSG +
Sbjct: 683 DLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 717
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 105/407 (25%), Positives = 183/407 (44%), Gaps = 71/407 (17%)
Query: 243 YLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSW--MGNFSNLYILSMSKNLLEGN 300
+L N+H +G + G S+ L LD+S N LSG + + +G+ S L L++S N L+
Sbjct: 80 FLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-- 136
Query: 301 IPVQFN---NLAILQILDISENNLSGSMISTLNLS----SVEHLYLQSNALGGSIPNTIF 353
P + + L L++LD+S N++SG+ + LS ++HL + N + G + +
Sbjct: 137 FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVS 194
Query: 354 RGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSH 413
R LE LD+ N F IP + + S L+ L + GN L G + +L ++++S
Sbjct: 195 RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 253
Query: 414 NRLNGSIPAC-ITNLLFWKVGSRYLSGFV----------MVVMDLG----VADIRNYYNS 458
N+ G IP + +L + + +G + + +DL + ++ S
Sbjct: 254 NQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 313
Query: 459 TVQLSLDGIDGRSLGTQVEVNFMTKNR--------YESYKGVILDYMAG-------LDLS 503
L + + ++ ++ + K R + + G + + + LDLS
Sbjct: 314 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 373
Query: 504 SNKLTGDIPSEICD----------LQN----------------IHGLNLSHNFLSGSIPE 537
SN +G I +C LQN + L+LS N+LSG+IP
Sbjct: 374 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 433
Query: 538 SFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIP 584
S +L + L L N L G+IP +L + +L + +NDL+G IP
Sbjct: 434 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 480
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 111/251 (44%), Gaps = 27/251 (10%)
Query: 366 NYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACIT 425
N G IP I + + L L + + G IP L Q++ L +D S+N L+G++P I+
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 426 NLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNR 485
+L V + D N + + S + N +T
Sbjct: 147 SL----------PNLVGITFD------GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190
Query: 486 YESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLS---GSIPESFSNL 542
++ + L ++ DLS N L GD +N ++L+ N L+ G + S
Sbjct: 191 PPTFANLNLAFV---DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS---- 243
Query: 543 KMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGNLH 602
K + LDL +N++ G +P LT+L L +VS+N+L G IP FD S+Y N
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303
Query: 603 LCGPPINKSCT 613
LCG P+ +CT
Sbjct: 304 LCGSPL-PACT 313
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 97/203 (47%), Gaps = 8/203 (3%)
Query: 223 NNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMG 282
NN G I P LT+L +LY+ + + SG I D L + L+ LD S N LSG +P +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 283 NFSNLYILSMSKNLLEGNIPVQFNNLA-ILQILDISENNLSGSMIST---LNLSSVEHLY 338
+ NL ++ N + G IP + + + + + IS N L+G + T LNL+ V+
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVD--- 203
Query: 339 LQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPH 398
L N L G + + L N + ++ NL L LR N + G +P
Sbjct: 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQ 262
Query: 399 QLCQLRKLSIMDLSHNRLNGSIP 421
L QL+ L +++S N L G IP
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIP 285
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 496 YMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKL 555
Y+ G+ N L G IP I L +H L ++H +SG+IP+ S +K + +LD S+N L
Sbjct: 82 YIGGI----NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137
Query: 556 NGQIPPQLTELHSLSKFDVSYNDLSGPIPD 585
+G +PP ++ L +L N +SG IPD
Sbjct: 138 SGTLPPSISSLPNLVGITFDGNRISGAIPD 167
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 9/218 (4%)
Query: 81 LGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGF--QLTSAQ 138
+G IP + L YL ++H ++G P +L + T L L + N+ SG S+
Sbjct: 90 VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT-LVTLDFSYNALSGTLPPSISSL 148
Query: 139 HGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSN 198
L+ + N +G +P + G M IS+N G IP + + L +D+S N
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207
Query: 199 KFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTR-LLFLYLDNNHFSGKIKDGL 257
G+ S ++ + + + L+ N+ + V L++ L L L NN G + GL
Sbjct: 208 MLEGDASVLFGSD-KNTQKIHLAKNSLAFDL--GKVGLSKNLNGLDLRNNRIYGTLPQGL 264
Query: 258 LRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKN 295
+ L L++S N+L G IP GN + + + N
Sbjct: 265 TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 64/158 (40%), Gaps = 53/158 (33%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRL-FSFCSLANLSKLEVFQLSMEADLLQ 59
+S N+L+G +P ANL +L ++ L N +G F S N K+ + + S+ DL +
Sbjct: 181 ISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239
Query: 60 VKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKL 119
V + NL LDL +N++ G P L T+L
Sbjct: 240 VGLSK----------------------------NLNGLDLRNNRIYGTLPQGL----TQL 267
Query: 120 EVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQ 157
+ L+ SL++S NN G++PQ
Sbjct: 268 KFLH-------------------SLNVSFNNLCGEIPQ 286
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 101/201 (50%), Gaps = 21/201 (10%)
Query: 161 IVLPKLDCMNISKN--SFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWL 218
+ LP L+ +++S+N SF+G S L+ LD+S F G ++ S +N LE L
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS---FNGVITMS--SNFLGLEQL 398
Query: 219 Q---LSNNNFDGQI-FPNYVNLTRLLFLYLDNNH----FSGKIKDGLLRSSELMVLDISN 270
+ ++N F +++L L++L + + H F+G I +GL S L VL ++
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGL---SSLEVLKMAG 454
Query: 271 NHLSGH-IPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL 329
N + +P NL L +S+ LE P FN+L+ LQ+L+++ N L
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF 514
Query: 330 N-LSSVEHLYLQSNALGGSIP 349
+ L+S++ ++L +N S P
Sbjct: 515 DRLTSLQKIWLHTNPWDCSCP 535
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 515 ICDLQNIHGLNLSHNFL-SGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSL 569
I L+ + LN++HN + S +PE FSNL +E LDLS NK+ L LH +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 134/570 (23%), Positives = 222/570 (38%), Gaps = 121/570 (21%)
Query: 163 LPKLDCMNISKNSFEG-NIPSSIGKMQGLRLLDVSSNK--FAGELSQSPVTNCFSLEWLQ 219
L L +++SKN + S GK+ L+ +D SSN+ E P+ +L +
Sbjct: 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK-TLSFFS 180
Query: 220 LSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPS 279
L+ N+ ++ ++ GK + R+ L +LD+S N G
Sbjct: 181 LAANSLYSRVSVDW-----------------GKCMNPF-RNMVLEILDVSGN---GWTVD 219
Query: 280 WMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYL 339
GNFSN S + +L+ + + I D +N +G L SSV HL L
Sbjct: 220 ITGNFSNAISKSQAFSLILAH-HIMGAGFGFHNIKDPDQNTFAG-----LARSSVRHLDL 273
Query: 340 QSNALGGSIPNTIFRG-SALETLDLR--------DNYFFGRIPHQI-NEHSNLRALLLRG 389
S+ S+ + +F L+ L+L D F+G Q+ N NL L
Sbjct: 274 -SHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS 332
Query: 390 NYLQGP--------------IPHQLCQ-LRKLSIMDLSHNRLNGS--IPACITNLLFWKV 432
N+ P I Q + L KL +DL N L IP+ +
Sbjct: 333 NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPS---------I 383
Query: 433 GSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSL------GTQVEVNFMTKNRY 486
+LSG +V + N + + LS + ++ + +++ + +NR+
Sbjct: 384 PDIFLSGNKLVTLP-----KINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRF 438
Query: 487 ESYKGVILDY----MAGLDLSSNKLTGDIPSEIC-----DLQNIHGLNLSHNFLSGSIPE 537
S G + L L N L +E+C L ++ L L+HN+L+ P
Sbjct: 439 SSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPG 498
Query: 538 SFSNLKMIESLDLSHNKL----NGQIPPQLTELHSLSKFDVSYNDLSGPIPD-------- 585
FS+L + L L+ N+L + +P L L D+S N L P PD
Sbjct: 499 VFSHLTALRGLSLNSNRLTVLSHNDLPANLEIL------DISRNQLLAPNPDVFVSLSVL 552
Query: 586 ---------KEQFSTFDESSYRGNLHLCGPPINKSCT-----NLLELLETSSKGAEDESA 631
+ + STF N+ + GPP + C + + L S++G ++E
Sbjct: 553 DITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEV 612
Query: 632 VDMVAFYWSFVASCVTVMLGLLAILWVNPY 661
+ + F F+ VT+ L L+ IL V +
Sbjct: 613 LKSLKFSL-FIVCTVTLTLFLMTILTVTKF 641
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 20/172 (11%)
Query: 161 IVLPKLDCMNISKN--SFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWL 218
+ LP L+ +++S+N SF+G S L+ LD+S F G ++ S +N LE L
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS---FNGVITMS--SNFLGLEQL 398
Query: 219 Q---LSNNNFDGQI-FPNYVNLTRLLFLYLDNNH----FSGKIKDGLLRSSELMVLDISN 270
+ ++N F +++L L++L + + H F+G I +GL S L VL ++
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGL---SSLEVLKMAG 454
Query: 271 NHLSGH-IPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNL 321
N + +P NL L +S+ LE P FN+L+ LQ+L++S NN
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 515 ICDLQNIHGLNLSHNFL-SGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSL 569
I L+ + LN++HN + S +PE FSNL +E LDLS NK+ L LH +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 85/170 (50%), Gaps = 16/170 (9%)
Query: 161 IVLPKLDCMNISKN--SFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSP-VTNCFSLEW 217
+ LP L+ +++S+N SF+G S L+ LD+S F G ++ S LE
Sbjct: 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLS---FNGVITMSSNFLGLEQLEH 424
Query: 218 LQLSNNNFDGQI-FPNYVNLTRLLFLYLDNNH----FSGKIKDGLLRSSELMVLDISNNH 272
L ++N F +++L L++L + + H F+G I +GL S L VL ++ N
Sbjct: 425 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGL---SSLEVLKMAGNS 480
Query: 273 LSGH-IPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNL 321
+ +P NL L +S+ LE P FN+L+ LQ+L++S NN
Sbjct: 481 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 515 ICDLQNIHGLNLSHNFL-SGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSL 569
I L+ + LN++HN + S +PE FSNL +E LDLS NK+ L LH +
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 99/203 (48%), Gaps = 25/203 (12%)
Query: 134 LTSAQHGLIS----LDISSNNFTGKLPQNMGIVLPKLDCMNISKN--SFEGNIPSSIGKM 187
LTS G+ S L++ SN LP + L +L +++S N SF+G S
Sbjct: 19 LTSVPTGIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77
Query: 188 QGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQ---LSNNNFDGQI-FPNYVNLTRLLFLY 243
L+ LD+S F G ++ S +N LE L+ ++N F +++L L++L
Sbjct: 78 TSLKYLDLS---FNGVITMS--SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 132
Query: 244 LDNNH----FSGKIKDGLLRSSELMVLDISNNHLSGH-IPSWMGNFSNLYILSMSKNLLE 298
+ + H F+G I +GL S L VL ++ N + +P NL L +S+ LE
Sbjct: 133 ISHTHTRVAFNG-IFNGL---SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188
Query: 299 GNIPVQFNNLAILQILDISENNL 321
P FN+L+ LQ+L++S NN
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNNF 211
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 97/389 (24%), Positives = 162/389 (41%), Gaps = 37/389 (9%)
Query: 208 PVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNN--HFSGKIKDGLLRSSELMV 265
P+ N +LE L L +N+ P +L L NN H+ K L+ + +
Sbjct: 124 PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS 183
Query: 266 LDISNNHLSGHIPSWMGNFSNLYILSM----SKNLL---EGNIPVQFNNLAILQILDISE 318
L+++ N ++G P G F + S+ ++NLL +G +L + D+ +
Sbjct: 184 LNLNGNDIAGIEP---GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD 240
Query: 319 NNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINE 378
++S ++ L SVE + LQ + NT S L+ LDL + +P +
Sbjct: 241 EDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVG 299
Query: 379 HSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLS 438
S L+ L+L N + LCQ+ + L+H + G N ++G+ L
Sbjct: 300 LSTLKKLVLSANKFEN-----LCQISASNFPSLTHLSIKG-------NTKRLELGTGCLE 347
Query: 439 GFV-MVVMDLGVADIRNYYNSTVQL-SLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDY 496
+ +DL DI +QL +L + +L ++ T E++K
Sbjct: 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT----EAFKEC--PQ 401
Query: 497 MAGLDLSSNKL-TGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHN-- 553
+ LDL+ +L D S +L + LNLSH+ L S + F L ++ L+L N
Sbjct: 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461
Query: 554 -KLNGQIPPQLTELHSLSKFDVSYNDLSG 581
K N Q L L L +S+ DLS
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLSS 490
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 124/304 (40%), Gaps = 34/304 (11%)
Query: 71 LKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKL-------AGNFPTWLLENNTKLEVLY 123
L+ L L +L +P+ L+ LK L LS NK A NFP+ T L +
Sbjct: 280 LQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL-----THLSIKG 334
Query: 124 LTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIV-LPKLDCMNISKNSFEGNIPS 182
T G L LD+S ++ N+ + L L +N+S N
Sbjct: 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE 394
Query: 183 SIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFL 242
+ + L LLD++ + + +QSP N L+ L LS++ D + L L L
Sbjct: 395 AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL 454
Query: 243 YLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIP 302
L NHF K + +++ L L G + + +F +L +
Sbjct: 455 NLQGNHFP---KGNIQKTNSLQTL--------GRLEILVLSFCDLSSIDQHA-------- 495
Query: 303 VQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLD 362
F +L ++ +D+S N L+ S I L+ +L L SN + +P+ + S T++
Sbjct: 496 --FTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTIN 553
Query: 363 LRDN 366
LR N
Sbjct: 554 LRQN 557
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 101/401 (25%), Positives = 165/401 (41%), Gaps = 74/401 (18%)
Query: 103 KLAGNFPTWLLENNTKLEVLYLTNNS---FSGFQLTSAQHGL-ISLDISSNNFTGKLP-- 156
KL FPT KL+VL NN+ S ++S Q +SL+++ N+ G P
Sbjct: 145 KLPKGFPT------EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA 198
Query: 157 --------------QNMGIVLPKL----------------DCMNISKNSFEGNIPSSIGK 186
QN+ ++ L D +IS FEG S+
Sbjct: 199 FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES 258
Query: 187 --MQGLRLLDVSSNKF------------AGELSQSP--VTNCFSLEWLQLSNNNFDGQIF 230
+Q ++SSN F A LS+ P + +L+ L LS N F+
Sbjct: 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ 318
Query: 231 PNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSE-LMVLDISNNHL--SGHIPSWMGNFSNL 287
+ N L L + N ++ G L + E L LD+S++ + S + N S+L
Sbjct: 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHL 378
Query: 288 YILSMSKNLLEGNIPVQFNNLAILQILDISENNL----SGSMISTLNLSSVEHLYLQSNA 343
L++S N F L++LD++ L + S L+L V +L S++
Sbjct: 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL---SHS 435
Query: 344 LGGSIPNTIFRG-SALETLDLRDNYF-FGRI--PHQINEHSNLRALLLRGNYLQGPIPHQ 399
L +F G AL+ L+L+ N+F G I + + L L+L L H
Sbjct: 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495
Query: 400 LCQLRKLSIMDLSHNRLNGSIPACITNL--LFWKVGSRYLS 438
L+ ++ +DLSHNRL S +++L ++ + S ++S
Sbjct: 496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHIS 536
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 242 LYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNI 301
LYLD N F+ K+ L L ++D+SNN +S N + L L +S N L
Sbjct: 36 LYLDGNQFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 302 PVQFNNLAILQILDISENNLSGSMISTLN-LSSVEHLYLQSNAL 344
P F+ L L++L + N++S N LS++ HL + +N L
Sbjct: 95 PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 490 KGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLD 549
KG+ D + L L N+ T +P E+ + +++ ++LS+N +S +SFSN+ + +L
Sbjct: 27 KGIPRD-VTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLI 84
Query: 550 LSHNKLNGQIPPQLTELHSLSKFDVSYNDLS 580
LS+N+L P L SL + ND+S
Sbjct: 85 LSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 114/259 (44%), Gaps = 18/259 (6%)
Query: 171 ISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIF 230
++ NSF+ + LR L + N +L + +L+ L LS+++ +
Sbjct: 307 LNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDC 366
Query: 231 PNY--VNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLY 288
N NL L +L L N G +L +LD++ HL H+ + F NL+
Sbjct: 367 CNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHL--HVKAPHSPFQNLH 424
Query: 289 ---ILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNL----SSVEHLYLQS 341
+L++S LL+ + L L+ L++ N+ IS NL S+E L L S
Sbjct: 425 LLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSS 484
Query: 342 NALGGSIPNTIFRG-SALETLDLRDNYFFGRIPHQINEHSNLRALLLR--GNYLQGPIPH 398
L SI F G + LDL N G ++ S+L+ L L N ++ PH
Sbjct: 485 CNLL-SIDQQAFHGLRNVNHLDLSHNSLTGD---SMDALSHLKGLYLNMASNNIRIIPPH 540
Query: 399 QLCQLRKLSIMDLSHNRLN 417
L L + SI++LSHN L+
Sbjct: 541 LLPALSQQSIINLSHNPLD 559
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 518 LQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYN 577
L+N++ L+LSHN L+G ++ S+LK + L+++ N + P L L S ++S+N
Sbjct: 498 LRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQSIINLSHN 556
Query: 578 DLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTN 614
L + F T+ Y+ NLH +C N
Sbjct: 557 PLDCTCSNI-HFITW----YKENLHKLEDSEETTCAN 588
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 69/185 (37%), Gaps = 17/185 (9%)
Query: 165 KLDCMNISKNSFEGNIPSSIGKM--QGLRLLDVSSNKFAG---------------ELSQS 207
++DC S +S IP+ K+ Q L +S F G LS
Sbjct: 18 EVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAG 77
Query: 208 PVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLD 267
+ L L L+NN + +LT+L LYL N R ++L L
Sbjct: 78 VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137
Query: 268 ISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMIS 327
++ N L +NL LS+S N L+ F+ L LQ + + N S
Sbjct: 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCE 197
Query: 328 TLNLS 332
TL LS
Sbjct: 198 TLYLS 202
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 114/274 (41%), Gaps = 59/274 (21%)
Query: 312 QILDISENNLSGSMISTLNLSSVEHLYLQ--SNALGGSIPNTIFRG-SALETLDLRDNYF 368
+ L++ EN++ +I T + HL + S L I F G +L TL+L DN
Sbjct: 38 RYLNLQENSIQ--VIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL 95
Query: 369 FGRIPHQINEH-SNLRALLLRGNYLQGPIP----HQLCQLRKLSIMDLSHNRLNGSIPAC 423
+P Q E+ S LR L LR N ++ IP +++ LR+L + +L RL A
Sbjct: 96 TT-VPTQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLRRLDLGELK--RLEYISEAA 151
Query: 424 ITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTK 483
L V RYL +LG+ ++++ N T + L+
Sbjct: 152 FEGL----VNLRYL--------NLGMCNLKDIPNLTALVRLEE----------------- 182
Query: 484 NRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLK 543
L+LS N+L P L ++ L L H ++ +F +LK
Sbjct: 183 ----------------LELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLK 226
Query: 544 MIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYN 577
+E L+LSHN L T LH L + +++N
Sbjct: 227 SLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 109/272 (40%), Gaps = 69/272 (25%)
Query: 283 NFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLN-LSSVEHLYLQS 341
+ +L IL +SKNL+ FN L L L++ +N L+ LS + L+L++
Sbjct: 57 HLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRN 116
Query: 342 NALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLC 401
N + SIP +Y F R+P
Sbjct: 117 NPI-ESIP----------------SYAFNRVP---------------------------- 131
Query: 402 QLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQ 461
LR+L + +L RL A L V RYL +LG+ ++++ N T
Sbjct: 132 SLRRLDLGELK--RLEYISEAAFEGL----VNLRYL--------NLGMCNLKDIPNLTAL 177
Query: 462 LSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNI 521
+ L+ + ++ N + R S++G L + L L ++ + DL+++
Sbjct: 178 VRLEEL-------ELSGNRLDLIRPGSFQG--LTSLRKLWLMHAQVATIERNAFDDLKSL 228
Query: 522 HGLNLSHNFLSGSIPESFSNLKMIESLDLSHN 553
LNLSHN L + F+ L +E + L+HN
Sbjct: 229 EELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 77/299 (25%), Positives = 123/299 (41%), Gaps = 67/299 (22%)
Query: 289 ILSMSKNLLE--GNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQ--SNAL 344
++ + L E +IPV + L++ EN++ +I T + HL + S L
Sbjct: 19 VICTRRELAEVPASIPVN------TRYLNLQENSIQ--VIRTDTFKHLRHLEILQLSKNL 70
Query: 345 GGSIPNTIFRG-SALETLDLRDNYFFGRIPHQINEH-SNLRALLLRGNYLQGPIP----H 398
I F G +L TL+L DN +P Q E+ S LR L LR N ++ IP +
Sbjct: 71 VRKIEVGAFNGLPSLNTLELFDNRLTT-VPTQAFEYLSKLRELWLRNNPIES-IPSYAFN 128
Query: 399 QLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNS 458
++ LR+L + +L RL A L V RYL +LG+ ++++ N
Sbjct: 129 RVPSLRRLDLGELK--RLEYISEAAFEGL----VNLRYL--------NLGMCNLKDIPNL 174
Query: 459 TVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDL 518
T + L+ L+LS N+L P L
Sbjct: 175 TALVRLEE---------------------------------LELSGNRLDLIRPGSFQGL 201
Query: 519 QNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYN 577
++ L L H ++ +F +LK +E L+LSHN L T LH L + +++N
Sbjct: 202 TSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 68/138 (49%), Gaps = 6/138 (4%)
Query: 283 NFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLN-LSSVEHLYLQS 341
+ +L IL +SKNL+ FN L L L++ +N L+ LS + L+L++
Sbjct: 57 HLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRN 116
Query: 342 NALGGSIPNTIF-RGSALETLDLRDNYFFGRIPHQINEH-SNLRALLLRGNYLQGPIPHQ 399
N + SIP+ F R +L LDL + I E NLR L L L+ IP+
Sbjct: 117 NPI-ESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKD-IPN- 173
Query: 400 LCQLRKLSIMDLSHNRLN 417
L L +L ++LS NRL+
Sbjct: 174 LTALVRLEELELSGNRLD 191
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 477 EVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICD-LQNIHGLNLSHNFLSGSI 535
+V MTKN + + LD+S N L C ++I LNLS N L+GS+
Sbjct: 394 KVALMTKN---------MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444
Query: 536 PESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPD 585
++ LDL +N++ IP +T L +L + +V+ N L +PD
Sbjct: 445 FRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS-VPD 490
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 16 NLTSLEYLALYDNKFKGRLFS-FCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVL 74
N++SLE L + N + C+ A + L++ +++L + CLP ++KVL
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAE----SILVLNLSSNMLTGSVFRCLPP-KVKVL 455
Query: 75 SLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNN 127
L N + IP + H L+ L+++ N+L P + + T L+ ++L +N
Sbjct: 456 DLHNNRIMSIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDN 507
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 100/393 (25%), Positives = 155/393 (39%), Gaps = 57/393 (14%)
Query: 213 FSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNH 272
S+E L L + F + T+L L L H G + G+ + L L +S NH
Sbjct: 251 MSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNH 309
Query: 273 LSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQ-FNNLAILQILDISENNLSGSMISTLNL 331
NF +L L + N+ + ++ V L LQ LD+S N++ S +L L
Sbjct: 310 FDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQL 369
Query: 332 SSVEHLY---LQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSN-LRALLL 387
++ HL L N G LE LDL P ++ + L+ L L
Sbjct: 370 KNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNL 429
Query: 388 RGNYLQGPIPHQLCQLRKLSIMDLSHNRL-NGSIPACITNLLFWKVGSRYLSGFVMVVMD 446
+L H L L L ++L N +G+I TNLL VGS V+++
Sbjct: 430 TYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITK--TNLL-QTVGSLE----VLILSS 482
Query: 447 LGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNK 506
G+ LS+D SLG M+ +DLS N
Sbjct: 483 CGL------------LSIDQQAFHSLGK----------------------MSHVDLSHNS 508
Query: 507 LTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTEL 566
LT D + L+ I+ LNL+ N ++ P L +++LSHN L+ + +
Sbjct: 509 LTCDSIDSLSHLKGIY-LNLAANSINIISPRLLPILSQQSTINLSHNPLDCTC----SNI 563
Query: 567 HSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRG 599
H L+ + + + L G E+ + + S RG
Sbjct: 564 HFLTWYKENLHKLEG----SEETTCANPPSLRG 592
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 91/361 (25%), Positives = 153/361 (42%), Gaps = 40/361 (11%)
Query: 208 PVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNN--HFSGKIKDGLLRSSELMV 265
PV N +LE L L +N+ FP L L NN H+ + L + +
Sbjct: 121 PVHNLENLESLYLGSNHISSIKFPKDFPARNLKVLDFQNNAIHYISREDMRSLEQAINLS 180
Query: 266 LDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNL--AILQIL------DIS 317
L+ + N++ G +G F + S++ N+ V FN L + Q L DI
Sbjct: 181 LNFNGNNVKG---IELGAFDSTIFQSLNFGGTP-NLSVIFNGLQNSTTQSLWLGTFEDID 236
Query: 318 ENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRG-SALETLDLRDNYFFGRIPHQI 376
+ ++S +M+ L SVE L LQ + I +T F+ + L+ LDL + G +P +
Sbjct: 237 DEDISSAMLKGLCEMSVESLNLQEHRF-SDISSTTFQCFTQLQELDLTATHLKG-LPSGM 294
Query: 377 NEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRY 436
+ L+ L+L N+ QLCQ+ + L+H + G++ L VG
Sbjct: 295 KGLNLLKKLVLSVNHFD-----QLCQISAANFPSLTHLYIRGNVKK-----LHLGVGCLE 344
Query: 437 LSGFVMVVMDLGVADIRNYYNSTVQL-SLDGIDGRSLGTQVEVNFMTKNRYESYKGVILD 495
G + +DL DI ++QL +L + +L + ++ E +
Sbjct: 345 KLGNLQ-TLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQ----- 398
Query: 496 YMAGLDLSSNKLTGDIPSEICDLQNIH---GLNLSHNFLSGSIPESFSNLKMIESLDLSH 552
+ LDL+ +L + P QN+H LNL++ FL S + L ++ L+L
Sbjct: 399 -LELLDLAFTRLHINAPQS--PFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKG 455
Query: 553 N 553
N
Sbjct: 456 N 456
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 108/265 (40%), Gaps = 10/265 (3%)
Query: 160 GIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQ 219
G+ ++ +N+ ++ F ++ L+ LD+++ G S N L+ L
Sbjct: 247 GLCEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPSGMKGLNL--LKKLV 304
Query: 220 LSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRS-SELMVLDISNNHL--SGH 276
LS N+FD + N L LY+ N + G L L LD+S+N + S
Sbjct: 305 LSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDC 364
Query: 277 IPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNL--SGSMISTLNLSSV 334
+ N S+L L++S N G F L++LD++ L + NL +
Sbjct: 365 CSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFL 424
Query: 335 EHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQIN---EHSNLRALLLRGNY 391
+ L L L S + + L L+L+ N+F + N +L L+L
Sbjct: 425 QVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCG 484
Query: 392 LQGPIPHQLCQLRKLSIMDLSHNRL 416
L L K+S +DLSHN L
Sbjct: 485 LLSIDQQAFHSLGKMSHVDLSHNSL 509
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 102/238 (42%), Gaps = 42/238 (17%)
Query: 93 NLKYLDLSHNKLAGNFPTWLLENNT-----KLEVLYLTNNSFSGFQLTSAQHGLISLDIS 147
N +YL+L N + +++ +T LEVL L NS ++ A +GL SL+
Sbjct: 76 NTRYLNLMENNIQ------MIQADTFRHLHHLEVLQLGRNSIRQIEV-GAFNGLASLNTL 128
Query: 148 S--NNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPS-SIGKMQGLRLLDVSSNKFAGEL 204
+N+ +P L KL + + N E +IPS + ++ L LD+ K +
Sbjct: 129 ELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYI 187
Query: 205 SQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELM 264
S+ F+L++L L N PN L L L + NHF +I+ G
Sbjct: 188 SEGAFEGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFP-EIRPGSFHG---- 240
Query: 265 VLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLS 322
+ + L++++ +L+E N F+ LA L L+++ NNLS
Sbjct: 241 ----------------LSSLKKLWVMNSQVSLIERN---AFDGLASLVELNLAHNNLS 279
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 114/248 (45%), Gaps = 25/248 (10%)
Query: 312 QILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRG-SALETLDLRDNYFF 369
+ L++ ENN+ T +L +E L L N++ I F G ++L TL+L DN+
Sbjct: 78 RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWL- 135
Query: 370 GRIPHQINEH-SNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLL 428
IP E+ S LR L LR N ++ + ++ L +DL + L
Sbjct: 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE----------LKKLE 185
Query: 429 FWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYES 488
+ G+ + F + ++LG+ +I++ N T + L+ ++ + N + R S
Sbjct: 186 YISEGA-FEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELE-------MSGNHFPEIRPGS 237
Query: 489 YKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESL 548
+ G L + L + +++++ + L ++ LNL+HN LS + F+ L+ + L
Sbjct: 238 FHG--LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVEL 295
Query: 549 DLSHNKLN 556
L HN N
Sbjct: 296 HLHHNPWN 303
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 86/327 (26%), Positives = 131/327 (40%), Gaps = 85/327 (25%)
Query: 11 PSVIANLTSL---EYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLP 67
PS++ L + E+ Y N F + F LAN+S + + +S++ +E+
Sbjct: 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY------LEDVPK 305
Query: 68 TFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNN 127
F+ + LS+ C L P L LK L L+ NK
Sbjct: 306 HFKWQSLSIIRCQLKQFPTLDLPF--LKSLTLTMNK------------------------ 339
Query: 128 SFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKN--SFEGNIPSSIG 185
G IS + LP L +++S+N SF G S
Sbjct: 340 ------------GSISFK--------------KVALPSLSYLDLSRNALSFSGCCSYSDL 373
Query: 186 KMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQ--------IFPNYVNLT 237
LR LD+S F G + S N LE LQ + D Q F +++L
Sbjct: 374 GTNSLRHLDLS---FNGAIIMS--ANFMGLEELQ----HLDFQHSTLKRVTEFSAFLSLE 424
Query: 238 RLLFLYLDNNHFSGKIK-DGL-LRSSELMVLDISNNHLSGH-IPSWMGNFSNLYILSMSK 294
+LL YLD ++ + KI DG+ L + L L ++ N + + + N +NL L +SK
Sbjct: 425 KLL--YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482
Query: 295 NLLEGNIPVQFNNLAILQILDISENNL 321
LE F+ L LQ+L++S NNL
Sbjct: 483 CQLEQISWGVFDTLHRLQLLNMSHNNL 509
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 89/208 (42%), Gaps = 14/208 (6%)
Query: 382 LRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLS--- 438
L++L L N +G I + L LS +DLS N L S C + R+L
Sbjct: 330 LKSLTLTMN--KGSISFKKVALPSLSYLDLSRNAL--SFSGCCSYSDLGTNSLRHLDLSF 385
Query: 439 --GFVMVVMDLGVADIR--NYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVIL 494
+M +G+ +++ ++ +ST++ + SL + ++ N + G+ L
Sbjct: 386 NGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL 445
Query: 495 DYMA--GLDLSSNKLTGDIPSEI-CDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLS 551
+ L ++ N + S + + N+ L+LS L F L ++ L++S
Sbjct: 446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505
Query: 552 HNKLNGQIPPQLTELHSLSKFDVSYNDL 579
HN L +L+SLS D S+N +
Sbjct: 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRI 533
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 515 ICDLQNIHGLNLSHNFL-SGSIPESFSNLKMIESLDLSHN 553
I L + LN++HNF+ S +P FSNL + +DLS+N
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 86/327 (26%), Positives = 131/327 (40%), Gaps = 85/327 (25%)
Query: 11 PSVIANLTSL---EYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLP 67
PS++ L + E+ Y N F + F LAN+S + + +S++ +E+
Sbjct: 247 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY------LEDVPK 300
Query: 68 TFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNN 127
F+ + LS+ C L P L LK L L+ NK
Sbjct: 301 HFKWQSLSIIRCQLKQFPTLDLPF--LKSLTLTMNK------------------------ 334
Query: 128 SFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKN--SFEGNIPSSIG 185
G IS + LP L +++S+N SF G S
Sbjct: 335 ------------GSISFK--------------KVALPSLSYLDLSRNALSFSGCCSYSDL 368
Query: 186 KMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQ--------IFPNYVNLT 237
LR LD+S F G + S N LE LQ + D Q F +++L
Sbjct: 369 GTNSLRHLDLS---FNGAIIMS--ANFMGLEELQ----HLDFQHSTLKRVTEFSAFLSLE 419
Query: 238 RLLFLYLDNNHFSGKIK-DGL-LRSSELMVLDISNNHLSGH-IPSWMGNFSNLYILSMSK 294
+LL YLD ++ + KI DG+ L + L L ++ N + + + N +NL L +SK
Sbjct: 420 KLL--YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 477
Query: 295 NLLEGNIPVQFNNLAILQILDISENNL 321
LE F+ L LQ+L++S NNL
Sbjct: 478 CQLEQISWGVFDTLHRLQLLNMSHNNL 504
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 89/208 (42%), Gaps = 14/208 (6%)
Query: 382 LRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLS--- 438
L++L L N +G I + L LS +DLS N L S C + R+L
Sbjct: 325 LKSLTLTMN--KGSISFKKVALPSLSYLDLSRNAL--SFSGCCSYSDLGTNSLRHLDLSF 380
Query: 439 --GFVMVVMDLGVADIR--NYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVIL 494
+M +G+ +++ ++ +ST++ + SL + ++ N + G+ L
Sbjct: 381 NGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL 440
Query: 495 DYMA--GLDLSSNKLTGDIPSEI-CDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLS 551
+ L ++ N + S + + N+ L+LS L F L ++ L++S
Sbjct: 441 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 500
Query: 552 HNKLNGQIPPQLTELHSLSKFDVSYNDL 579
HN L +L+SLS D S+N +
Sbjct: 501 HNNLLFLDSSHYNQLYSLSTLDCSFNRI 528
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 515 ICDLQNIHGLNLSHNFL-SGSIPESFSNLKMIESLDLSHN 553
I L + LN++HNF+ S +P FSNL + +DLS+N
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 68/185 (36%), Gaps = 17/185 (9%)
Query: 165 KLDCMNISKNSFEGNIPSSIGKM--QGLRLLDVSSNKFAG---------------ELSQS 207
++DC S +S IP+ K+ Q L +S F G LS
Sbjct: 18 EVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAG 77
Query: 208 PVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLD 267
+ L L L+NN + +LT+L LYL N R ++L L
Sbjct: 78 VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137
Query: 268 ISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMIS 327
++ N L +NL LS+S N L+ F+ L LQ + + N S
Sbjct: 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCE 197
Query: 328 TLNLS 332
L LS
Sbjct: 198 ILYLS 202
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 515 ICDLQNIHGLNLSHNFL-SGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSL 569
I L+ + LN++HN + S +PE FSNL +E LDLS NK+ L LH +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 515 ICDLQNIHGLNLSHNFL-SGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSL 569
I L+ + LN++HN + S +PE FSNL +E LDLS NK+ L LH +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 515 ICDLQNIHGLNLSHNFL-SGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSL 569
I L+ + LN++HN + S +PE FSNL +E LDLS NK+ L LH +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 515 ICDLQNIHGLNLSHNFL-SGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSL 569
I L+ + LN++HN + S +PE FSNL +E LDLS NK+ L LH +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 515 ICDLQNIHGLNLSHNFL-SGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSL 569
I L+ + LN++HN + S +PE FSNL +E LDLS NK+ L LH +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 95/441 (21%), Positives = 162/441 (36%), Gaps = 84/441 (19%)
Query: 232 NYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMV--LDISNNHLSGHIPSWMGNFSNLYI 289
NYV+L+ L+ FS +++D E L I NN G S+L I
Sbjct: 33 NYVDLSLNSIAELNETSFS-RLQDLQFLKVEQQTPGLVIRNNTFRG--------LSSLII 83
Query: 290 LSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMIST---LNLSSVEHLYLQSNALGG 346
L + N FN LA L++L +++ NL G+++S L+S+E L L+ N +
Sbjct: 84 LKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK 143
Query: 347 SIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKL 406
P + F L++R + +++ L +G + L +L +
Sbjct: 144 IQPASFF-------LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT------LLRLSSI 190
Query: 407 SIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDG 466
++ D++ L W+ + +DL + S + D
Sbjct: 191 TLQDMNEYWLG------------WEKCGNPFKNTSITTLDLSG---NGFKESMAKRFFDA 235
Query: 467 IDGRSLGTQV------------EVNFMTKNRYESYKGVILDYMAGLDLSSNK---LTGDI 511
I G + + + NF + + ++KG+ + DLS +K L +
Sbjct: 236 IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF-TFKGLEASGVKTCDLSKSKIFALLKSV 294
Query: 512 PSEICDLQNIH---------------------GLNLSHNFLSGSIPESFSNLKMIESLDL 550
S DL+ + LNLS NFL F NL +E LDL
Sbjct: 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354
Query: 551 SHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGNLHLCGPPINK 610
S+N + L +L + + N L +PD FD + + L P +
Sbjct: 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPD----GIFDRLTSLQKIWLHTNPWDC 409
Query: 611 SCTNLLELLETSSKGAEDESA 631
SC + L +K ++ E
Sbjct: 410 SCPRIDYLSRWLNKNSQKEQG 430
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 97/418 (23%), Positives = 171/418 (40%), Gaps = 62/418 (14%)
Query: 193 LDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPN--YVNLTRLLFLYLDNNHFS 250
+D+S N A EL+++ + L++L++ G + N + L+ L+ L LD N F
Sbjct: 35 VDLSLNSIA-ELNETSFSRLQDLQFLKVEQQT-PGLVIRNNTFRGLSSLIILKLDYNQFL 92
Query: 251 GKIKDGLLRS-SELMVLDISNNHLSGHIPSWMGNF----SNLYILSMSKNLLEGNIPVQF 305
+++ G + L VL ++ +L G + S GNF ++L +L + N ++ P F
Sbjct: 93 -QLETGAFNGLANLEVLTLTQCNLDGAVLS--GNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Query: 306 N-NLAILQILDISEN-----------NLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIF 353
N+ +LD++ N N G + L LSS+ + LG F
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209
Query: 354 RGSALETLDLRDNYFFGRIPHQINEH---SNLRALLLRGNYLQGPIPHQLCQLRKLSIMD 410
+ +++ TLDL N F + + + + +++L+L +Y G
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS--------------S 255
Query: 411 LSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGR 470
H L V + LS + + + + +++ QL+L
Sbjct: 256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL---LKSVFSHFTDLEQLTL------ 306
Query: 471 SLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICD-LQNIHGLNLSHN 529
Q E+N + N + L ++ L+LS N L G I S + + L + L+LS+N
Sbjct: 307 ---AQNEINKIDDNAFWG-----LTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYN 357
Query: 530 FLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYN--DLSGPIPD 585
+ +SF L ++ L L N+L L SL K + N D S P D
Sbjct: 358 HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 415
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 93/381 (24%), Positives = 154/381 (40%), Gaps = 60/381 (15%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+ +N G+ +I L ++L L F G LANL L + Q +++ +L
Sbjct: 70 IRNNTFRGLSSLIILKLDYNQFLQLETGAFNG-------LANLEVLTLTQCNLDGAVLSG 122
Query: 61 KIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLL----ENN 116
L + ++ VL N +F L+ LDL+ NK+ LL ++
Sbjct: 123 NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF 182
Query: 117 TKLEVLYLTNNSFSGFQLTSAQHG-------LISLDISSNNFTGKLPQNM--GIVLPKLD 167
T L + +T + + L + G + +LD+S N F + + I K+
Sbjct: 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQ 242
Query: 168 CMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDG 227
+ +S NS+ N+ SS G D + F G L S V C LS +
Sbjct: 243 SLILS-NSY--NMGSSFGHTN---FKDPDNFTFKG-LEASGVKTC------DLSKSKIFA 289
Query: 228 QIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNL 287
+ + + T L L L N + + + L+ L++S N L G I S M
Sbjct: 290 LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRM------ 342
Query: 288 YILSMSKNLLEGNIPVQFNNLAILQILDISENNLSG-SMISTLNLSSVEHLYLQSNALGG 346
F NL L++LD+S N++ S L L +++ L L +N L
Sbjct: 343 -----------------FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL-K 384
Query: 347 SIPNTIF-RGSALETLDLRDN 366
S+P+ IF R ++L+ + L N
Sbjct: 385 SVPDGIFDRLTSLQKIWLHTN 405
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 87/216 (40%), Gaps = 42/216 (19%)
Query: 39 SLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVIPNFLL-HQFNLKYL 97
S L +L+V ++S L NCL L LS+ +CNL +P + H L++L
Sbjct: 195 SFKRLYRLKVLEIS-HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFL 253
Query: 98 DLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQ 157
+LS+N P +E + E+L L G QL + F G
Sbjct: 254 NLSYN------PISTIEGSMLHELLRLQEIQLVGGQLAV---------VEPYAFRG---- 294
Query: 158 NMGIVLPKLDCMNISKN---SFEGNIPSSIGKMQGL-----------RLLDVSSNKFAGE 203
L L +N+S N + E ++ S+G ++ L RLL V ++
Sbjct: 295 -----LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLN 349
Query: 204 LSQSPVTNCFSLEWLQLSN-NNFDGQIFPNYVNLTR 238
++ T C + E++Q +F + PNY R
Sbjct: 350 FNRQQPT-CATPEFVQGKEFKDFPDVLLPNYFTCRR 384
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
LDL N++ E ++ L L+ N +S P +F+NL + +L L N+L
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP 96
Query: 560 PPQLTELHSLSKFDVSYNDL 579
T L +L+K D+S N +
Sbjct: 97 LGVFTGLSNLTKLDISENKI 116
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 496 YMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKL 555
++ L+L+ N ++ P +L N+ L L N L F+ L + LD+S NK+
Sbjct: 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116
Query: 556 NGQIPPQLTELHSLSKFDVSYNDL 579
+ +L++L +V NDL
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDL 140
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 498 AGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG 557
A LDL +NK+T + +L+N+H L L +N +S P +F+ L +E L LS N+L
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK- 113
Query: 558 QIPPQLTELHSLSKFDVSYNDLS 580
++P ++ + +L + V N+++
Sbjct: 114 ELPEKMPK--TLQELRVHENEIT 134
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 498 AGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG 557
A LDL +NK+T + +L+N+H L L +N +S P +F+ L +E L LS N+L
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK- 113
Query: 558 QIPPQLTELHSLSKFDVSYNDLS 580
++P ++ + +L + V N+++
Sbjct: 114 ELPEKMPK--TLQELRVHENEIT 134
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 91/205 (44%), Gaps = 21/205 (10%)
Query: 141 LISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKF 200
L+++ + N LP+ + PKL +++S N+ E + L+ L +SSN+
Sbjct: 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177
Query: 201 AG-ELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLR 259
+LS P SL +S N P V LD +H S + G +
Sbjct: 178 THVDLSLIP-----SLFHANVSYNLLSTLAIPIAVE-------ELDASHNSINVVRGPV- 224
Query: 260 SSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISEN 319
+ EL +L + +N+L+ +W+ N+ L + +S N LE + F + L+ L IS N
Sbjct: 225 NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282
Query: 320 -----NLSGSMISTLNLSSVEHLYL 339
NL G I TL + + H +L
Sbjct: 283 RLVALNLYGQPIPTLKVLDLSHNHL 307
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 146/320 (45%), Gaps = 28/320 (8%)
Query: 235 NLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSK 294
NLT+L+ + ++NN + L + L L + NN ++ P + N +NL L +S
Sbjct: 83 NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSS 138
Query: 295 NLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFR 354
N + + L LQ L S N ++ + NL+++E L + SN + S + + +
Sbjct: 139 NTISD--ISALSGLTSLQQLSFSSNQVT-DLKPLANLTTLERLDISSNKV--SDISVLAK 193
Query: 355 GSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHN 414
+ LE+L +N P I +NL L L GN L+ L L L+ +DL++N
Sbjct: 194 LTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANN 249
Query: 415 RLNGSIP-ACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLG 473
+++ P + +T L K+G+ +S + G+ + N + QL D +
Sbjct: 250 QISNLAPLSGLTKLTELKLGANQISNISPLA---GLTALTNLELNENQLE----DISPIS 302
Query: 474 TQVEVNFMT---KNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNF 530
+ ++T N + L + L S+NK++ D+ S + +L NI+ L+ HN
Sbjct: 303 NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVS-DV-SSLANLTNINWLSAGHNQ 360
Query: 531 LSGSIPESFSNLKMIESLDL 550
+S P +NL I L L
Sbjct: 361 ISDLTP--LANLTRITQLGL 378
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG-Q 558
L+LSSN ++ DI S + L ++ L+ S N ++ P +NL +E LD+S NK++
Sbjct: 134 LELSSNTIS-DI-SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDIS 189
Query: 559 IPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGN 600
+ +LT L SL ++ N+ I + DE S GN
Sbjct: 190 VLAKLTNLESL----IATNNQISDITPLGILTNLDELSLNGN 227
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 95/231 (41%), Gaps = 45/231 (19%)
Query: 93 NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFT 152
NL L L +N++ P L+N T L L L++N+ S S L L SSN T
Sbjct: 108 NLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVT 164
Query: 153 GKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNC 212
P + + L LD+SSNK + + +TN
Sbjct: 165 DLKP---------------------------LANLTTLERLDISSNKVSDISVLAKLTNL 197
Query: 213 FSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKD-GLLRS-SELMVLDISN 270
SL ++ NN I P + LT L L L+ N +KD G L S + L LD++N
Sbjct: 198 ESL----IATNNQISDITPLGI-LTNLDELSLNGNQ----LKDIGTLASLTNLTDLDLAN 248
Query: 271 NHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNL 321
N +S P + + L L + N + P+ L L L+++EN L
Sbjct: 249 NQISNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQL 295
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 128/284 (45%), Gaps = 61/284 (21%)
Query: 282 GNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLN-LSSVEHLYLQ 340
G +N +L++ +N ++ F +L L+IL +S N++ I N L+++ L L
Sbjct: 61 GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120
Query: 341 SNALGGSIPNTIFRG-SALETLDLRDN-------YFFGRIPHQINEHSNLRALLLRGNYL 392
N L +IPN F S L+ L LR+N Y F RIP +LR L
Sbjct: 121 DNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP-------SLRRL------- 165
Query: 393 QGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADI 452
L +L++LS +S G ++NL RYL +L + ++
Sbjct: 166 ------DLGELKRLSY--ISEGAFEG-----LSNL-------RYL--------NLAMCNL 197
Query: 453 RNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIP 512
R N T + LD +D + N ++ R S++G++ ++ L + +++
Sbjct: 198 REIPNLTPLIKLDELD-------LSGNHLSAIRPGSFQGLM--HLQKLWMIQSQIQVIER 248
Query: 513 SEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN 556
+ +LQ++ +NL+HN L+ + F+ L +E + L HN N
Sbjct: 249 NAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 85/188 (45%), Gaps = 27/188 (14%)
Query: 4 NQLSGILPSVIANLTSLEYLALYDNKFKG-RLFSFCSLANLSKLEVFQLSMEADLLQVKI 62
N+L+ I L+ L+ L L +N + ++F + +L +L++ +L + + +
Sbjct: 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181
Query: 63 ENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPT-----------W 111
E L+ L+L CNL IPN L L LDLS N L+ P W
Sbjct: 182 EG---LSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237
Query: 112 LLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNI 171
++++ ++ + N+F Q L+ ++++ NN T LP ++ L L+ +++
Sbjct: 238 MIQS----QIQVIERNAFDNLQ------SLVEINLAHNNLT-LLPHDLFTPLHHLERIHL 286
Query: 172 SKNSFEGN 179
N + N
Sbjct: 287 HHNPWNCN 294
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 92/210 (43%), Gaps = 37/210 (17%)
Query: 119 LEVLYLTNNSFSGFQLTSAQHGLISLDISS--NNFTGKLPQNMGIVLPKLDCMNISKNSF 176
LE+L L+ N ++ A +GL +L+ +N +P + L KL + + N
Sbjct: 90 LEILQLSRNHIRTIEI-GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI 148
Query: 177 EGNIPS-SIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVN 235
E +IPS + ++ LR LD+ K +S+ +L +L L+ N + PN
Sbjct: 149 E-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL--REIPNLTP 205
Query: 236 LTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIP-SWMG--NFSNLYILSM 292
L +L D LD+S NHLS P S+ G + L+++
Sbjct: 206 LIKL-----DE-------------------LDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241
Query: 293 SKNLLEGNIPVQFNNLAILQILDISENNLS 322
++E N F+NL L ++++ NNL+
Sbjct: 242 QIQVIERN---AFDNLQSLVEINLAHNNLT 268
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 103/224 (45%), Gaps = 27/224 (12%)
Query: 193 LDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPN--YVNLTRLLFLYLDNNHFS 250
+D+S N A EL+++ + L++L++ G + N + L+ L+ L LD N F
Sbjct: 35 VDLSLNSIA-ELNETSFSRLQDLQFLKVEQQT-PGLVIRNNTFRGLSSLIILKLDYNQFL 92
Query: 251 GKIKDGLLRS-SELMVLDISNNHLSGHIPSWMGNF----SNLYILSMSKNLLEGNIPVQF 305
+++ G + L VL ++ +L G + S GNF ++L +L + N ++ P F
Sbjct: 93 -QLETGAFNGLANLEVLTLTQCNLDGAVLS--GNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Query: 306 N-NLAILQILDISEN-----------NLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIF 353
N+ +LD++ N N G + L LSS+ + LG F
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209
Query: 354 RGSALETLDLRDNYFFGRIPHQINEH---SNLRALLLRGNYLQG 394
+ +++ TLDL N F + + + + +++L+L +Y G
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 115/286 (40%), Gaps = 40/286 (13%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+ +N G+ +I L ++L L F G LANL L + Q +++ +L
Sbjct: 70 IRNNTFRGLSSLIILKLDYNQFLQLETGAFNG-------LANLEVLTLTQCNLDGAVLSG 122
Query: 61 KIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLL----ENN 116
L + ++ VL N +F L+ LDL+ NK+ LL ++
Sbjct: 123 NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF 182
Query: 117 TKLEVLYLTNNSFSGFQLTSAQHG-------LISLDISSNNFTGKLPQNM--GIVLPKLD 167
T L + +T + + L + G + +LD+S N F + + I K+
Sbjct: 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQ 242
Query: 168 CMNISKNSFEGNIPSSIG---------------KMQGLRLLDVSSNKFAGELSQSPVTNC 212
+ +S NS+ N+ SS G + G++ D+S +K L +S ++
Sbjct: 243 SLILS-NSY--NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA-LLKSVFSHF 298
Query: 213 FSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLL 258
LE L L+ N + + LT L L LD N + DG+
Sbjct: 299 TDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKS-VPDGIF 343
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 71/190 (37%), Gaps = 51/190 (26%)
Query: 276 HIPSW-MGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSM--------- 325
H+P+ NL IL + N+L F LA+L+ LD+S+N S+
Sbjct: 45 HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 104
Query: 326 -ISTLN----------------LSSVEHLYLQSNALGG---------------------- 346
+ TL+ L+++++LYLQ NAL
Sbjct: 105 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 164
Query: 347 -SIPNTIFRG-SALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLR 404
S+P FRG +L+ L L N PH + L L L N L L LR
Sbjct: 165 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 224
Query: 405 KLSIMDLSHN 414
L + L+ N
Sbjct: 225 ALQYLRLNDN 234
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 103/242 (42%), Gaps = 49/242 (20%)
Query: 169 MNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQ 228
+N++KN + + LR+LD+ N+ +LS EW L N
Sbjct: 386 LNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQ--------EWRGLRN------ 431
Query: 229 IFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLY 288
IF Y++ + L L + ++ +LR L +DIS PS NL
Sbjct: 432 IFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDIS--------PSPFRPLRNLT 483
Query: 289 ILSMSKN--------LLEGNIPVQFNNLAILQILDISENNLS--------GSMISTLN-L 331
IL +S N LLEG L L+ILD NNL+ G ++ L L
Sbjct: 484 ILDLSNNNIANINEDLLEG--------LENLEILDFQHNNLARLWKRANPGGPVNFLKGL 535
Query: 332 SSVEHLYLQSNALGGSIPNTIFRG-SALETLDLRDNYFFGRIPHQINEHSNLRALLLRGN 390
S + L L+SN L IP +F+ L++++L N P ++ ++LR+L L+ N
Sbjct: 536 SHLHILNLESNGL-DEIPVGVFKNLFELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKN 594
Query: 391 YL 392
+
Sbjct: 595 LI 596
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 66/156 (42%), Gaps = 5/156 (3%)
Query: 276 HIPSW-MGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISEN-NLSGSMISTLN-LS 332
H+P+ NL IL + N+L F LA+L+ LD+S+N L +T + L
Sbjct: 46 HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105
Query: 333 SVEHLYLQSNALGGSIPNTIFRG-SALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNY 391
+ L+L L P +FRG +AL+ L L+DN + NL L L GN
Sbjct: 106 RLHTLHLDRCGLQELGPG-LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR 164
Query: 392 LQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNL 427
+ L L + L NR+ P +L
Sbjct: 165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200
>pdb|2XXK|A Chain A, Siap Complex
Length = 312
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 137 AQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGL--RLLD 194
AQ L + + K+ +++G+ L N ++ + +SI M+GL R+ D
Sbjct: 93 AQKALFDTEFG-KDLIKKMDKDLGVTLLS-QAYNGTRQTTSNRAINSIADMKGLKLRVPD 150
Query: 195 VSSN-KFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFP 231
++N +A + SP FS +L L N DGQ P
Sbjct: 151 AATNLAYAKYVGASPTPMAFSEVYLALQTNAVDGQENP 188
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 91/205 (44%), Gaps = 21/205 (10%)
Query: 141 LISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKF 200
L+++ + N LP+ + PKL +++S N+ E + L+ L +SSN+
Sbjct: 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183
Query: 201 AG-ELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLR 259
+LS P SL +S N P V LD +H S + G +
Sbjct: 184 THVDLSLIP-----SLFHANVSYNLLSTLAIPIAVE-------ELDASHNSINVVRGPV- 230
Query: 260 SSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISEN 319
+ EL +L + +N+L+ +W+ N+ L + +S N LE + F + L+ L IS N
Sbjct: 231 NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288
Query: 320 -----NLSGSMISTLNLSSVEHLYL 339
NL G I TL + + H +L
Sbjct: 289 RLVALNLYGQPIPTLKVLDLSHNHL 313
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 82/320 (25%), Positives = 146/320 (45%), Gaps = 28/320 (8%)
Query: 235 NLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSK 294
NLT+L+ + ++NN + L + L L + NN ++ P + N +NL L +S
Sbjct: 83 NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSS 138
Query: 295 NLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFR 354
N + + L LQ L+ S N ++ + NL+++E L + SN + S + + +
Sbjct: 139 NTISD--ISALSGLTSLQQLNFSSNQVT-DLKPLANLTTLERLDISSNKV--SDISVLAK 193
Query: 355 GSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHN 414
+ LE+L +N P I +NL L L GN L+ L L L+ +DL++N
Sbjct: 194 LTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANN 249
Query: 415 RLNGSIP-ACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLG 473
+++ P + +T L K+G+ +S + G+ + N + QL D +
Sbjct: 250 QISNLAPLSGLTKLTELKLGANQISNISPLA---GLTALTNLELNENQLE----DISPIS 302
Query: 474 TQVEVNFMT---KNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNF 530
+ ++T N + L + L +NK++ D+ S + +L NI+ L+ HN
Sbjct: 303 NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVS-DV-SSLANLTNINWLSAGHNQ 360
Query: 531 LSGSIPESFSNLKMIESLDL 550
+S P +NL I L L
Sbjct: 361 ISDLTP--LANLTRITQLGL 378
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG-Q 558
L+LSSN ++ DI S + L ++ LN S N ++ P +NL +E LD+S NK++
Sbjct: 134 LELSSNTIS-DI-SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDIS 189
Query: 559 IPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGN 600
+ +LT L SL ++ N+ I + DE S GN
Sbjct: 190 VLAKLTNLESL----IATNNQISDITPLGILTNLDELSLNGN 227
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 96/231 (41%), Gaps = 45/231 (19%)
Query: 93 NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFT 152
NL L L +N++ P L+N T L L L++N+ S S L L+ SSN T
Sbjct: 108 NLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVT 164
Query: 153 GKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNC 212
P + + L LD+SSNK + + +TN
Sbjct: 165 DLKP---------------------------LANLTTLERLDISSNKVSDISVLAKLTNL 197
Query: 213 FSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKD-GLLRS-SELMVLDISN 270
SL ++ NN I P + LT L L L+ N +KD G L S + L LD++N
Sbjct: 198 ESL----IATNNQISDITPLGI-LTNLDELSLNGNQ----LKDIGTLASLTNLTDLDLAN 248
Query: 271 NHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNL 321
N +S P + + L L + N + P+ L L L+++EN L
Sbjct: 249 NQISNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQL 295
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%)
Query: 493 ILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSH 552
+ + + LDLS+N++T S++ N+ L L+ N ++ +SFS+L +E LDLS+
Sbjct: 50 LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109
Query: 553 NKLN 556
N L+
Sbjct: 110 NYLS 113
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%)
Query: 493 ILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSH 552
+ + + LDLS+N++T S++ N+ L L+ N ++ +SFS+L +E LDLS+
Sbjct: 24 LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 83
Query: 553 NKLN 556
N L+
Sbjct: 84 NYLS 87
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 87/206 (42%), Gaps = 38/206 (18%)
Query: 68 TFQLKVLSLPNCNLGVIPNFL-LHQFNLKYLDLSHNKLAGNFPTWLLENNT------KLE 120
T ++K +++ N + ++P L H +L+YLDLS N + + L+N+ L+
Sbjct: 309 TERVKRITVENSKVFLVPCLLSQHLKSLEYLDLSENLMVEEY----LKNSACEDAWPSLQ 364
Query: 121 VLYLTNNSFSGFQLTSAQ----HGLISLDISSNNF-----TGKLPQNMGIVLPKLDCMNI 171
L L N + + T L ++DIS N+F T + P+ M L+ +
Sbjct: 365 TLILRQNHLASLEKTGETLLTLKNLTNIDISKNSFHSMPETCQWPEKMKY----LNLSST 420
Query: 172 SKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFP 231
+S G IP + L +LDVS+N P L+ L +S N P
Sbjct: 421 RIHSVTGCIPKT------LEILDVSNNNLNLFSLNLP-----QLKELYISRNKL--MTLP 467
Query: 232 NYVNLTRLLFLYLDNNHFSGKIKDGL 257
+ L LL L + N + DG+
Sbjct: 468 DASLLPMLLVLKISRNQLKS-VPDGI 492
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 82/320 (25%), Positives = 145/320 (45%), Gaps = 28/320 (8%)
Query: 235 NLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSK 294
NLT+L+ + ++NN + L + L L + NN ++ P + N +NL L +S
Sbjct: 83 NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSS 138
Query: 295 NLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFR 354
N + + L LQ L S N ++ + NL+++E L + SN + S + + +
Sbjct: 139 NTISD--ISALSGLTSLQQLSFSSNQVT-DLKPLANLTTLERLDISSNKV--SDISVLAK 193
Query: 355 GSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHN 414
+ LE+L +N P I +NL L L GN L+ L L L+ +DL++N
Sbjct: 194 LTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANN 249
Query: 415 RLNGSIP-ACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLG 473
+++ P + +T L K+G+ +S + G+ + N + QL D +
Sbjct: 250 QISNLAPLSGLTKLTELKLGANQISNISPLA---GLTALTNLELNENQLE----DISPIS 302
Query: 474 TQVEVNFMT---KNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNF 530
+ ++T N + L + L +NK++ D+ S + +L NI+ L+ HN
Sbjct: 303 NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVS-DV-SSLANLTNINWLSAGHNQ 360
Query: 531 LSGSIPESFSNLKMIESLDL 550
+S P +NL I L L
Sbjct: 361 ISDLTP--LANLTRITQLGL 378
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG-Q 558
L+LSSN ++ DI S + L ++ L+ S N ++ P +NL +E LD+S NK++
Sbjct: 134 LELSSNTIS-DI-SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDIS 189
Query: 559 IPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGN 600
+ +LT L SL ++ N+ I + DE S GN
Sbjct: 190 VLAKLTNLESL----IATNNQISDITPLGILTNLDELSLNGN 227
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 95/231 (41%), Gaps = 45/231 (19%)
Query: 93 NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFT 152
NL L L +N++ P L+N T L L L++N+ S S L L SSN T
Sbjct: 108 NLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVT 164
Query: 153 GKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNC 212
P + + L LD+SSNK + + +TN
Sbjct: 165 DLKP---------------------------LANLTTLERLDISSNKVSDISVLAKLTNL 197
Query: 213 FSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKD-GLLRS-SELMVLDISN 270
SL ++ NN I P + LT L L L+ N +KD G L S + L LD++N
Sbjct: 198 ESL----IATNNQISDITPLGI-LTNLDELSLNGNQ----LKDIGTLASLTNLTDLDLAN 248
Query: 271 NHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNL 321
N +S P + + L L + N + P+ L L L+++EN L
Sbjct: 249 NQISNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQL 295
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 147/324 (45%), Gaps = 37/324 (11%)
Query: 235 NLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSK 294
NLT+L+ + ++NN + L + L L + NN ++ P + N +NL L +S
Sbjct: 83 NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSS 138
Query: 295 NLLEGNIPVQFNNLAILQILDISENNLSGSMISTL----NLSSVEHLYLQSNALGGSIPN 350
N + + L LQ L+ G+ ++ L NL+++E L + SN + S +
Sbjct: 139 NTISD--ISALSGLTSLQQLNF------GNQVTDLKPLANLTTLERLDISSNKV--SDIS 188
Query: 351 TIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMD 410
+ + + LE+L +N P I +NL L L GN L+ L L L+ +D
Sbjct: 189 VLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLASLTNLTDLD 244
Query: 411 LSHNRLNGSIP-ACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDG 469
L++N+++ P + +T L K+G+ +S + G+ + N + QL D
Sbjct: 245 LANNQISNLAPLSGLTKLTELKLGANQISNISPLA---GLTALTNLELNENQLE----DI 297
Query: 470 RSLGTQVEVNFMT---KNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNL 526
+ + ++T N + L + L S+NK++ D+ S + +L NI+ L+
Sbjct: 298 SPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVS-DV-SSLANLTNINWLSA 355
Query: 527 SHNFLSGSIPESFSNLKMIESLDL 550
HN +S P +NL I L L
Sbjct: 356 GHNQISDLTP--LANLTRITQLGL 377
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 78/157 (49%), Gaps = 25/157 (15%)
Query: 262 ELMVLDISNNHLS--------GHIPSWMGNFSNLYILSMSKNLLEGNIPVQ-FNNLAILQ 312
+L +LD+ +N+L+ G ++ S+L+IL++ N + IPV+ F +L L+
Sbjct: 510 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELK 568
Query: 313 ILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSA---LETLDLRDNYF 368
I+D+ NNL+ S N S++ L LQ N L S+ +F G A L LD+R N F
Sbjct: 569 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVF-GPAFRNLTELDMRFNPF 626
Query: 369 ------FGRIPHQINE-HSNLRALLLRGNYLQGPIPH 398
+ INE H+N+ L +YL PH
Sbjct: 627 DCTCESIAWFVNWINETHTNIPE--LSSHYLCNTPPH 661
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 8/110 (7%)
Query: 501 DLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP 560
D S KLT +P ++ NI LNL+HN L +F+ + SLD+ N ++ P
Sbjct: 15 DCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 71
Query: 561 PQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGNLHLCGPPINK 610
+L L ++ +N+LS + DK TF + LHL I K
Sbjct: 72 ELCQKLPMLKVLNLQHNELSQ-LSDK----TFAFCTNLTELHLMSNSIQK 116
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 78/157 (49%), Gaps = 25/157 (15%)
Query: 262 ELMVLDISNNHLS--------GHIPSWMGNFSNLYILSMSKNLLEGNIPVQ-FNNLAILQ 312
+L +LD+ +N+L+ G ++ S+L+IL++ N + IPV+ F +L L+
Sbjct: 515 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELK 573
Query: 313 ILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSA---LETLDLRDNYF 368
I+D+ NNL+ S N S++ L LQ N L S+ +F G A L LD+R N F
Sbjct: 574 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVF-GPAFRNLTELDMRFNPF 631
Query: 369 ------FGRIPHQINE-HSNLRALLLRGNYLQGPIPH 398
+ INE H+N+ L +YL PH
Sbjct: 632 DCTCESIAWFVNWINETHTNIPE--LSSHYLCNTPPH 666
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 8/110 (7%)
Query: 501 DLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP 560
D S KLT +P ++ NI LNL+HN L +F+ + SLD+ N ++ P
Sbjct: 20 DCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 76
Query: 561 PQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGNLHLCGPPINK 610
+L L ++ +N+LS + DK TF + LHL I K
Sbjct: 77 ELCQKLPMLKVLNLQHNELSQ-LSDK----TFAFCTNLTELHLMSNSIQK 121
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 78/157 (49%), Gaps = 25/157 (15%)
Query: 262 ELMVLDISNNHLS--------GHIPSWMGNFSNLYILSMSKNLLEGNIPVQ-FNNLAILQ 312
+L +LD+ +N+L+ G ++ S+L+IL++ N + IPV+ F +L L+
Sbjct: 505 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELK 563
Query: 313 ILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSA---LETLDLRDNYF 368
I+D+ NNL+ S N S++ L LQ N L S+ +F G A L LD+R N F
Sbjct: 564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVF-GPAFRNLTELDMRFNPF 621
Query: 369 ------FGRIPHQINE-HSNLRALLLRGNYLQGPIPH 398
+ INE H+N+ L +YL PH
Sbjct: 622 DCTCESIAWFVNWINETHTNIPE--LSSHYLCNTPPH 656
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 8/110 (7%)
Query: 501 DLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP 560
D S KLT +P ++ NI LNL+HN L +F+ + SLD+ N ++ P
Sbjct: 10 DCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 66
Query: 561 PQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGNLHLCGPPINK 610
+L L ++ +N+LS + DK TF + LHL I K
Sbjct: 67 ELCQKLPMLKVLNLQHNELSQ-LSDK----TFAFCTNLTELHLMSNSIQK 111
>pdb|2XWK|A Chain A, Siap R147a Mutant In Complex With Neu5ac
Length = 312
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 137 AQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLL--D 194
AQ L + + K+ +++G+ L N ++ + +SI M+GL+L +
Sbjct: 93 AQKALFDTEFG-KDLIKKMDKDLGVTLLS-QAYNGTRQTTSNRAINSIADMKGLKLAVPN 150
Query: 195 VSSN-KFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFP 231
++N +A + SP FS +L L N DGQ P
Sbjct: 151 AATNLAYAKYVGASPTPMAFSEVYLALQTNAVDGQENP 188
>pdb|2V4C|A Chain A, Structure Of Sialic Acid Binding Protein (Siap) In The
Presence Of Kdn
Length = 309
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 137 AQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGL--RLLD 194
AQ L + + K+ +++G+ L N ++ + +SI M+GL R+ +
Sbjct: 93 AQKALFDTEFG-KDLIKKMDKDLGVTLLS-QAYNGTRQTTSNRAINSIADMKGLKLRVPN 150
Query: 195 VSSN-KFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFP 231
++N +A + SP FS +L L N DGQ P
Sbjct: 151 AATNLAYAKYVGASPTPMAFSEVYLALQTNAVDGQENP 188
>pdb|2WYK|A Chain A, Siap In Complex With Neu5gc
Length = 308
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 137 AQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGL--RLLD 194
AQ L + + K+ +++G+ L N ++ + +SI M+GL R+ +
Sbjct: 93 AQKALFDTEFG-KDLIKKMDKDLGVTLLS-QAYNGTRQTTSNRAINSIADMKGLKLRVPN 150
Query: 195 VSSN-KFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFP 231
++N +A + SP FS +L L N DGQ P
Sbjct: 151 AATNLAYAKYVGASPTPMAFSEVYLALQTNAVDGQENP 188
>pdb|2XWV|A Chain A, Siap Complex
Length = 312
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 137 AQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGL--RLLD 194
AQ L + + K+ +++G+ L N ++ + +SI M+GL R+ +
Sbjct: 93 AQKALFDTEFG-KDLIKKMDKDLGVTLLS-QAYNGTRQTTSNRAINSIADMKGLKLRVPN 150
Query: 195 VSSN-KFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFP 231
++N +A + SP FS +L L N DGQ P
Sbjct: 151 AATNLAYAKYVGASPTPMAFSEVYLALQTNAVDGQENP 188
>pdb|2CEX|A Chain A, Structure Of A Sialic Acid Binding Protein (Siap) In The
Presence Of The Sialic Acid Acid Analogue Neu5ac2en
pdb|2CEX|B Chain B, Structure Of A Sialic Acid Binding Protein (Siap) In The
Presence Of The Sialic Acid Acid Analogue Neu5ac2en
pdb|2CEX|C Chain C, Structure Of A Sialic Acid Binding Protein (Siap) In The
Presence Of The Sialic Acid Acid Analogue Neu5ac2en
pdb|2CEX|D Chain D, Structure Of A Sialic Acid Binding Protein (Siap) In The
Presence Of The Sialic Acid Acid Analogue Neu5ac2en
pdb|2CEY|A Chain A, Apo Structure Of Siap
Length = 306
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 137 AQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGL--RLLD 194
AQ L + + K+ +++G+ L N ++ + +SI M+GL R+ +
Sbjct: 93 AQKALFDTEFG-KDLIKKMDKDLGVTLLS-QAYNGTRQTTSNRAINSIADMKGLKLRVPN 150
Query: 195 VSSN-KFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFP 231
++N +A + SP FS +L L N DGQ P
Sbjct: 151 AATNLAYAKYVGASPTPMAFSEVYLALQTNAVDGQENP 188
>pdb|3B50|A Chain A, Structure Of H. Influenzae Sialic Acid Binding Protein
Bound To Neu5ac
Length = 310
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 137 AQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGL--RLLD 194
AQ L + + K+ +++G+ L N ++ + +SI M+GL R+ +
Sbjct: 93 AQKALFDTEFG-KDLIKKMDKDLGVTLLS-QAYNGTRQTTSNRAINSIADMKGLKLRVPN 150
Query: 195 VSSN-KFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFP 231
++N +A + SP FS +L L N DGQ P
Sbjct: 151 AATNLAYAKYVGASPTPMAFSEVYLALQTNAVDGQENP 188
>pdb|2WX9|A Chain A, Crystal Structure Of The Sialic Acid Binding Periplasmic
Protein Siap
pdb|2WYP|A Chain A, Crystal Structure Of Sialic Acid Binding Protein
pdb|2XA5|A Chain A, Structure Of Substrate Binding Protein Siap (A11n) In
Complex With Neu5ac
Length = 312
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 137 AQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGL--RLLD 194
AQ L + + K+ +++G+ L N ++ + +SI M+GL R+ +
Sbjct: 93 AQKALFDTEFG-KDLIKKMDKDLGVTLLS-QAYNGTRQTTSNRAINSIADMKGLKLRVPN 150
Query: 195 VSSN-KFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFP 231
++N +A + SP FS +L L N DGQ P
Sbjct: 151 AATNLAYAKYVGASPTPMAFSEVYLALQTNAVDGQENP 188
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 86/214 (40%), Gaps = 36/214 (16%)
Query: 395 PIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRY---------LSGFVMVVM 445
P+ L + +KL ++ +N+L G +PA + + + Y GF V
Sbjct: 321 PVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVE 380
Query: 446 DLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYM-----AGL 500
+L A + Y + D +S+ ++F + N S G D + G+
Sbjct: 381 NLSFAHNKLKYIPNI------FDAKSVSVXSAIDF-SYNEIGSVDGKNFDPLDPTPFKGI 433
Query: 501 DLS----SNKLTGDIPSEICDLQN-IHGLNLSHNFLSGSIP--------ESFSNLKMIES 547
++S SN P E+ + + +NL N L+ IP E+F N ++ S
Sbjct: 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLXGNXLT-EIPKNSLKDENENFKNTYLLTS 492
Query: 548 LDLSHNKLNGQIPP-QLTELHSLSKFDVSYNDLS 580
+DL NKL + T L L D+SYN S
Sbjct: 493 IDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFS 526
>pdb|2XWI|A Chain A, Siap R147k Mutant In Complex With Neu5ac
Length = 308
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 137 AQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLL--D 194
AQ L + + K+ +++G+ L N ++ + +SI M+GL+L +
Sbjct: 93 AQKALFDTEFG-KDLIKKMDKDLGVTLLS-QAYNGTRQTTSNRAINSIADMKGLKLKVPN 150
Query: 195 VSSN-KFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFP 231
++N +A + SP FS +L L N DGQ P
Sbjct: 151 AATNLAYAKYVGASPTPMAFSEVYLALQTNAVDGQENP 188
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 4/178 (2%)
Query: 143 SLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGK-MQGLRLLDVSSNKFA 201
LD+ SN + LP L KL + ++ N + +P+ I K ++ L L V+ NK
Sbjct: 41 KLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ 98
Query: 202 GELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSS 261
L +L L+L N + +LT+L +L L N K + +
Sbjct: 99 A-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157
Query: 262 ELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISEN 319
L L + NN L + L L + N L+ F++L L++L + EN
Sbjct: 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
>pdb|2XWO|A Chain A, Siap R147e Mutant In Complex With Sialylamide
Length = 312
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 137 AQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLL--D 194
AQ L + + K+ +++G+ L N ++ + +SI M+GL+L +
Sbjct: 93 AQKALFDTEFG-KDLIKKMDKDLGVTLLS-QAYNGTRQTTSNRAINSIADMKGLKLEVPN 150
Query: 195 VSSN-KFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFP 231
++N +A + SP FS +L L N DGQ P
Sbjct: 151 AATNLAYAKYVGASPTPMAFSEVYLALQTNAVDGQENP 188
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 2/42 (4%)
Query: 495 DYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIP 536
D++ L L+ N LT ++P+EI +L N+ L+LSHN L+ S+P
Sbjct: 247 DFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLP 286
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 382 LRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPA 422
L L L GN L +P ++ L L ++DLSHNRL S+PA
Sbjct: 249 LTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLT-SLPA 287
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 524 LNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN--GQIPPQLTELHSLSKFDVSYNDLS 580
L+ S+N L+ ++ E+ +L +E+L L N+L +I T++ SL + D+S N +S
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 120/284 (42%), Gaps = 25/284 (8%)
Query: 93 NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFT 152
NL+YL+L+ N++ P L N KL LY+ N + L L ++ +N +
Sbjct: 67 NLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNIS 123
Query: 153 GKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNC 212
P L K +N+ N ++ S + GL L V+ +K +P+ N
Sbjct: 124 DISPL---ANLTKXYSLNLGANHNLSDL-SPLSNXTGLNYLTVTESKVK---DVTPIANL 176
Query: 213 FSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKD--GLLRSSELMVLDISN 270
L L L+ N + I P +LT L + + +I D + + L L I N
Sbjct: 177 TDLYSLSLNYNQIE-DISP-LASLTSLHYFT----AYVNQITDITPVANXTRLNSLKIGN 230
Query: 271 NHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLN 330
N ++ P + N S L L + N + V+ +L L+ L++ N +S IS LN
Sbjct: 231 NKITDLSP--LANLSQLTWLEIGTNQISDINAVK--DLTKLKXLNVGSNQISD--ISVLN 284
Query: 331 -LSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIP 373
LS + L+L +N LG I + L TL L N+ P
Sbjct: 285 NLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 11/149 (7%)
Query: 179 NIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTR 238
N+P S+ L LD+S N + ++ T +L L LS+N+ + +V +
Sbjct: 32 NVPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89
Query: 239 LLFLYLDNNHFSGKIKDGLLRS--SELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNL 296
L +L L +NH D L S L VL + NNH+ + + + L L +S+N
Sbjct: 90 LRYLDLSSNHL--HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ 147
Query: 297 LEGNIPVQF----NNLAILQILDISENNL 321
+ PV+ N L L +LD+S N L
Sbjct: 148 I-SRFPVELIKDGNKLPKLMLLDLSSNKL 175
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 496 YMAGLDLSSNKLTGDIPSE--ICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHN 553
Y A LDLS N L+ + +E L N+H L LSHN L+ E+F + + LDLS N
Sbjct: 40 YTALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98
Query: 554 KLN 556
L+
Sbjct: 99 HLH 101
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 91/371 (24%), Positives = 169/371 (45%), Gaps = 52/371 (14%)
Query: 204 LSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSEL 263
+SQ+ + +L+ +L + DG + N NLT++ F NN + L ++L
Sbjct: 39 VSQTDLDQVTTLQADRLGIKSIDGVEYLN--NLTQINF---SNNQLTDITP--LKNLTKL 91
Query: 264 MVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLS- 322
+ + ++NN ++ P + N +NL L++ N + P++ NL L L++S N +S
Sbjct: 92 VDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISD 147
Query: 323 ---------------GSMISTL----NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDL 363
G+ ++ L NL+++E L + SN + S + + + + LE+L
Sbjct: 148 ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV--SDISVLAKLTNLESLIA 205
Query: 364 RDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP-A 422
+N P I +NL L L GN L+ L L L+ +DL++N+++ P +
Sbjct: 206 TNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLS 261
Query: 423 CITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMT 482
+T L K+G+ +S + G+ + N + QL D + + ++T
Sbjct: 262 GLTKLTELKLGANQISNISPLA---GLTALTNLELNENQLE----DISPISNLKNLTYLT 314
Query: 483 ---KNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESF 539
N + L + L ++NK++ D+ S + +L NI+ L+ HN +S P
Sbjct: 315 LYFNNISDISPVSSLTKLQRLFFANNKVS-DV-SSLANLTNINWLSAGHNQISDLTP--L 370
Query: 540 SNLKMIESLDL 550
+NL I L L
Sbjct: 371 ANLTRITQLGL 381
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 70/164 (42%), Gaps = 38/164 (23%)
Query: 286 NLYILSMSKNLLEGNIPVQFNNLAILQILDISEN--------------------NLSGSM 325
NL IL + N L G F L +L+ LD+S+N +L
Sbjct: 56 NLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCG 115
Query: 326 ISTLN------LSSVEHLYLQSNALGGSIPNTIFRG-SALETLDLRDNYFFGRIPHQINE 378
+ L L+++++LYLQ N L ++P+ FR L L L N RIP + E
Sbjct: 116 LQELGPGLFRGLAALQYLYLQDNNL-QALPDNTFRDLGNLTHLFLHGN----RIP-SVPE 169
Query: 379 HS-----NLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 417
H+ +L LLL N++ PH L +L + L N L+
Sbjct: 170 HAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS 213
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 86/203 (42%), Gaps = 43/203 (21%)
Query: 93 NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFT 152
NL L+L N++ P L+N TK+ L L+ N + + +LD++S T
Sbjct: 70 NLIGLELKDNQITDLTP---LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQIT 126
Query: 153 GKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNC 212
P + + L++L + N+ + SP+
Sbjct: 127 DVTP---------------------------LAGLSNLQVLYLDLNQIT---NISPLAGL 156
Query: 213 FSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKD--GLLRSSELMVLDISN 270
+L++L + NN + + P NL++L L D+N KI D L L+ + + +
Sbjct: 157 TNLQYLSIGNNQVN-DLTP-LANLSKLTTLRADDN----KISDISPLASLPNLIEVHLKD 210
Query: 271 NHLSGHIPSWMGNFSNLYILSMS 293
N +S P + N SNL+I++++
Sbjct: 211 NQISDVSP--LANLSNLFIVTLT 231
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 520 NIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDL 579
++ L+L+H L+ + L ++ LDLSHN+L +PP L L L S N L
Sbjct: 442 DVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNAL 498
Query: 580 S 580
Sbjct: 499 E 499
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 520 NIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDL 579
++ L+L+H L+ + L ++ LDLSHN+L +PP L L L S N L
Sbjct: 442 DVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNAL 498
Query: 580 S 580
Sbjct: 499 E 499
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 480 FMTKNRYESYKGVILDYMAGLD---LSSNKLTGDIPSEICD-LQNIHGLNLSHNFLSGSI 535
+T N+ +S + D + L L N+L +P + D L N+ LNL+HN L S+
Sbjct: 91 ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQ-SL 148
Query: 536 PES-FSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPD 585
P+ F L + LDLS+N+L +L L + N L +PD
Sbjct: 149 PKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPD 198
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 15/158 (9%)
Query: 236 LTRLLFLYLDNNHFSG---KIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSM 292
LT L +L L N + D L EL++++ N L +NL L++
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE---NQLQSLPDGVFDKLTNLTYLNL 140
Query: 293 SKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLN-LSSVEHLYLQSNALGGSIPNT 351
+ N L+ F+ L L LD+S N L + L+ ++ L L N L S+P+
Sbjct: 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL-KSVPDG 199
Query: 352 IF-RGSALETLDLRDNYFFGRIP------HQINEHSNL 382
+F R ++L+ + L DN + P IN+HS +
Sbjct: 200 VFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGV 237
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 14/140 (10%)
Query: 450 ADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSN---- 505
A +N NS Q+ + D +S+ + ++ RY + G L ++ L +N
Sbjct: 34 AVTQNELNSIDQIIANNSDIKSVQG---IQYLPNVRYLALGGNKLHDISALKELTNLTYL 90
Query: 506 KLTGD----IPSEICD-LQNIHGLNLSHNFLSGSIPES-FSNLKMIESLDLSHNKLNGQI 559
LTG+ +P+ + D L N+ L L N L S+P+ F L + L+L+HN+L
Sbjct: 91 ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLP 149
Query: 560 PPQLTELHSLSKFDVSYNDL 579
+L +L++ D+SYN L
Sbjct: 150 KGVFDKLTNLTELDLSYNQL 169
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 55/138 (39%), Gaps = 16/138 (11%)
Query: 214 SLEWLQLSNNNFDGQIFPNYV---NLTRLLFLYLDNNHFSGKIKDG--LLRSSELMVLDI 268
SLE+L LS N + N L L L NH K G LL L LDI
Sbjct: 361 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI 420
Query: 269 SNN--HLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMI 326
S N H W L + S +++ IP L++LD+S NNL
Sbjct: 421 SRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP------QTLEVLDVSNNNLDS--- 471
Query: 327 STLNLSSVEHLYLQSNAL 344
+L L ++ LY+ N L
Sbjct: 472 FSLFLPRLQELYISRNKL 489
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 266 LDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEG-NIPVQFNNLAILQILDI 316
LD+S+NHLS SW G S+L L++ N + + F NL LQ L I
Sbjct: 105 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 156
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 55/138 (39%), Gaps = 16/138 (11%)
Query: 214 SLEWLQLSNNNFDGQIFPNYV---NLTRLLFLYLDNNHFSGKIKDG--LLRSSELMVLDI 268
SLE+L LS N + N L L L NH K G LL L LDI
Sbjct: 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI 394
Query: 269 SNN--HLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMI 326
S N H W L + S +++ IP L++LD+S NNL
Sbjct: 395 SRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP------QTLEVLDVSNNNLDS--- 445
Query: 327 STLNLSSVEHLYLQSNAL 344
+L L ++ LY+ N L
Sbjct: 446 FSLFLPRLQELYISRNKL 463
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 266 LDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEG-NIPVQFNNLAILQILDI 316
LD+S+NHLS SW G S+L L++ N + + F NL LQ L I
Sbjct: 79 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 82/324 (25%), Positives = 146/324 (45%), Gaps = 37/324 (11%)
Query: 235 NLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSK 294
NLT+L+ + ++NN + L + L L + NN ++ P + N +NL L +S
Sbjct: 83 NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSS 138
Query: 295 NLLEGNIPVQFNNLAILQILDISENNLSGSMISTL----NLSSVEHLYLQSNALGGSIPN 350
N + + L LQ L+ G+ ++ L NL+++E L + SN + S +
Sbjct: 139 NTISD--ISALSGLTSLQQLNF------GNQVTDLKPLANLTTLERLDISSNKV--SDIS 188
Query: 351 TIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMD 410
+ + + LE+L +N P I +NL L L GN L+ L L L+ +D
Sbjct: 189 VLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLASLTNLTDLD 244
Query: 411 LSHNRLNGSIP-ACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDG 469
L++N+++ P + +T L K+G+ +S + G+ + N + QL D
Sbjct: 245 LANNQISNLAPLSGLTKLTELKLGANQISNISPLA---GLTALTNLELNENQLE----DI 297
Query: 470 RSLGTQVEVNFMT---KNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNL 526
+ + ++T N + L + L +NK++ D+ S + +L NI+ L+
Sbjct: 298 SPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVS-DV-SSLANLTNINWLSA 355
Query: 527 SHNFLSGSIPESFSNLKMIESLDL 550
HN +S P +NL I L L
Sbjct: 356 GHNQISDLTP--LANLTRITQLGL 377
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 65/158 (41%), Gaps = 23/158 (14%)
Query: 67 PTFQLKVLSLPNCNL-----GVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLE------- 114
PT +++ LSL NC+L GV+P+ L L+ L LS N L L E
Sbjct: 79 PTCKIQKLSLQNCSLTEAGCGVLPSTLRSLPTLRELHLSDNPLGDAGLRLLCEGLLDPQC 138
Query: 115 NNTKLEVLYLTNNSFSGFQLTS---AQHGLISLDISSNNFTGKLPQNMGIVLPKLDC-MN 170
+ KL++ Y + S L S A L L +S+N+ + +G L C +
Sbjct: 139 HLEKLQLEYCRLTAASCEPLASVLRATRALKELTVSNNDIGEAGARVLGQGLADSACQLE 198
Query: 171 ISKNSFEGNIPSSIGKMQG-------LRLLDVSSNKFA 201
+ G P++ + G LR LD+ SN
Sbjct: 199 TLRLENCGLTPANCKDLCGIVASQASLRELDLGSNGLG 236
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Query: 457 NSTVQLSLDGIDGRS---LGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPS 513
N ++S DG+ GR + +++ N +T +++G ++ L L NK+
Sbjct: 39 NELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA--SHIQELQLGENKIKEISNK 96
Query: 514 EICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN 556
L + LNL N +S +P SF +L + SL+L+ N N
Sbjct: 97 MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 12/111 (10%)
Query: 502 LSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPP 561
+SS+ L G +P + L L N L+G P +F I+ L L NK+
Sbjct: 44 ISSDGLFGRLPHLV-------KLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK 96
Query: 562 QLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSC 612
LH L ++ N +S +P +F+ + +L+L P N +C
Sbjct: 97 MFLGLHQLKTLNLYDNQISCVMP-----GSFEHLNSLTSLNLASNPFNCNC 142
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 91/371 (24%), Positives = 168/371 (45%), Gaps = 52/371 (14%)
Query: 204 LSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSEL 263
+SQ+ + +L+ +L + DG + N NLT++ F NN + L ++L
Sbjct: 40 VSQTDLDQVTTLQADRLGIKSIDGVEYLN--NLTQINF---SNNQLTDITP--LKNLTKL 92
Query: 264 MVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLS- 322
+ + ++NN ++ P + N +NL L++ N + P++ NL L L++S N +S
Sbjct: 93 VDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISD 148
Query: 323 ---------------GSMISTL----NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDL 363
G+ ++ L NL+++E L + SN + S + + + + LE+L
Sbjct: 149 ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV--SDISVLAKLTNLESLIA 206
Query: 364 RDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP-A 422
+N P I +NL L L GN L+ L L L+ +DL++N+++ P +
Sbjct: 207 TNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLS 262
Query: 423 CITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMT 482
+T L K+G+ +S + G+ + N + QL D + + ++T
Sbjct: 263 GLTKLTELKLGANQISNISPLA---GLTALTNLELNENQLE----DISPISNLKNLTYLT 315
Query: 483 ---KNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESF 539
N + L + L +NK++ D+ S + +L NI+ L+ HN +S P
Sbjct: 316 LYFNNISDISPVSSLTKLQRLFFYNNKVS-DV-SSLANLTNINWLSAGHNQISDLTP--L 371
Query: 540 SNLKMIESLDL 550
+NL I L L
Sbjct: 372 ANLTRITQLGL 382
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 12/144 (8%)
Query: 480 FMTKNRYESYKGVILDYMAGLD---LSSNKLTGDIPSEICD-LQNIHGLNLSHNFLSGSI 535
+T N+ +S + D + L L N+L +P + D L N+ L L HN L S+
Sbjct: 91 ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLYLYHNQLQ-SL 148
Query: 536 PES-FSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDE 594
P+ F L + LDL +N+L +L L + ++ N L +PD FD
Sbjct: 149 PKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKS-VPD----GVFDR 203
Query: 595 SSYRGNLHLCGPPINKSCTNLLEL 618
+ ++ L P + +C+++L L
Sbjct: 204 LTSLTHIWLLNNPWDCACSDILYL 227
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
LDL +N ++ + LQ+++ L L +N +S ++FS L+ ++ L +S N L +I
Sbjct: 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL-VEI 117
Query: 560 PPQL 563
PP L
Sbjct: 118 PPNL 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,029,198
Number of Sequences: 62578
Number of extensions: 833349
Number of successful extensions: 2552
Number of sequences better than 100.0: 118
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 1605
Number of HSP's gapped (non-prelim): 551
length of query: 688
length of database: 14,973,337
effective HSP length: 105
effective length of query: 583
effective length of database: 8,402,647
effective search space: 4898743201
effective search space used: 4898743201
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)